Query 047728
Match_columns 474
No_of_seqs 873 out of 2969
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 02:33:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.4E-50 3E-55 350.4 26.6 316 100-473 105-469 (480)
2 KOG0271 Notchless-like WD40 re 100.0 2.8E-44 6.2E-49 311.3 24.5 314 68-430 114-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.1E-44 4.6E-49 316.0 21.5 281 101-430 166-458 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 4.1E-42 8.8E-47 301.7 19.5 270 146-474 173-449 (459)
5 KOG0286 G-protein beta subunit 100.0 7.5E-40 1.6E-44 274.6 30.8 287 101-430 46-343 (343)
6 KOG0279 G protein beta subunit 100.0 2E-38 4.3E-43 264.4 29.3 286 100-433 5-314 (315)
7 KOG0315 G-protein beta subunit 100.0 2.4E-38 5.3E-43 259.7 28.3 284 121-457 11-306 (311)
8 KOG0286 G-protein beta subunit 100.0 9.8E-38 2.1E-42 261.9 28.0 276 141-474 48-334 (343)
9 KOG0279 G protein beta subunit 100.0 3.1E-37 6.8E-42 257.3 26.7 286 141-473 8-301 (315)
10 KOG0645 WD40 repeat protein [G 100.0 2E-36 4.2E-41 251.5 31.1 288 100-432 4-311 (312)
11 KOG0319 WD40-repeat-containing 100.0 5.2E-37 1.1E-41 287.1 28.6 351 93-461 130-599 (775)
12 KOG0281 Beta-TrCP (transducin 100.0 2.2E-38 4.9E-43 271.6 17.6 274 110-437 197-482 (499)
13 KOG0282 mRNA splicing factor [ 100.0 5.5E-38 1.2E-42 280.3 19.6 288 96-430 200-503 (503)
14 KOG0295 WD40 repeat-containing 100.0 3.9E-37 8.4E-42 265.6 23.8 283 101-431 99-405 (406)
15 KOG0285 Pleiotropic regulator 100.0 1.7E-36 3.7E-41 260.9 27.6 289 98-434 139-441 (460)
16 KOG0273 Beta-transducin family 100.0 2.7E-36 6E-41 268.5 28.8 303 100-461 169-503 (524)
17 KOG0291 WD40-repeat-containing 100.0 2.4E-35 5.3E-40 276.3 36.2 377 70-473 97-538 (893)
18 KOG0284 Polyadenylation factor 100.0 3.1E-37 6.8E-42 269.8 19.4 275 111-433 97-381 (464)
19 KOG0318 WD40 repeat stress pro 100.0 1.5E-34 3.3E-39 260.7 35.3 351 97-474 177-549 (603)
20 KOG0265 U5 snRNP-specific prot 100.0 8.5E-36 1.8E-40 251.2 24.9 282 101-431 38-337 (338)
21 KOG0315 G-protein beta subunit 100.0 3.7E-35 8E-40 241.0 27.7 273 95-403 25-309 (311)
22 KOG0281 Beta-TrCP (transducin 100.0 3.1E-37 6.7E-42 264.6 12.9 272 147-471 196-473 (499)
23 KOG0293 WD40 repeat-containing 100.0 1.2E-35 2.7E-40 260.1 22.7 287 99-434 213-515 (519)
24 KOG0263 Transcription initiati 100.0 4.4E-36 9.6E-41 283.6 21.1 270 147-434 377-651 (707)
25 KOG0306 WD40-repeat-containing 100.0 1.7E-34 3.6E-39 270.6 29.0 236 216-474 369-653 (888)
26 KOG0295 WD40 repeat-containing 100.0 4.8E-35 1E-39 252.7 22.8 295 120-474 76-395 (406)
27 KOG0296 Angio-associated migra 100.0 1.7E-34 3.7E-39 249.5 26.0 315 100-474 54-387 (399)
28 KOG0319 WD40-repeat-containing 100.0 8.3E-35 1.8E-39 272.4 25.0 292 96-432 309-619 (775)
29 KOG0273 Beta-transducin family 100.0 6.8E-34 1.5E-38 253.3 28.9 271 111-432 236-523 (524)
30 KOG0313 Microtubule binding pr 100.0 2.9E-34 6.3E-39 249.2 24.8 280 108-432 103-418 (423)
31 KOG0266 WD40 repeat-containing 100.0 1.4E-33 3E-38 273.7 32.5 283 103-432 151-454 (456)
32 cd00200 WD40 WD40 domain, foun 100.0 8E-33 1.7E-37 254.5 34.5 279 103-430 2-289 (289)
33 KOG0316 Conserved WD40 repeat- 100.0 1.5E-33 3.3E-38 229.6 24.8 280 99-431 6-298 (307)
34 KOG0263 Transcription initiati 100.0 1.3E-33 2.9E-38 266.9 26.1 271 98-407 366-698 (707)
35 PLN00181 protein SPA1-RELATED; 100.0 1.7E-32 3.7E-37 285.6 37.2 279 105-431 478-792 (793)
36 KOG0284 Polyadenylation factor 100.0 1.2E-34 2.6E-39 253.7 16.9 268 148-474 96-369 (464)
37 KOG0265 U5 snRNP-specific prot 100.0 1.9E-33 4.2E-38 237.0 23.4 271 137-461 36-318 (338)
38 KOG0318 WD40 repeat stress pro 100.0 5.1E-32 1.1E-36 244.5 33.9 326 99-473 92-505 (603)
39 KOG0291 WD40-repeat-containing 100.0 1.4E-32 3.1E-37 257.8 31.4 277 111-435 266-553 (893)
40 KOG0285 Pleiotropic regulator 100.0 1.6E-33 3.5E-38 242.7 21.5 249 139-438 142-395 (460)
41 KOG0645 WD40 repeat protein [G 100.0 5.9E-32 1.3E-36 224.9 29.3 275 141-462 7-291 (312)
42 KOG0296 Angio-associated migra 100.0 1.4E-32 3.1E-37 237.6 25.4 289 100-432 96-398 (399)
43 KOG0643 Translation initiation 100.0 2.7E-32 5.7E-37 226.5 25.8 284 105-434 5-319 (327)
44 KOG0316 Conserved WD40 repeat- 100.0 1E-32 2.2E-37 224.9 21.5 267 140-462 9-281 (307)
45 KOG0276 Vesicle coat complex C 100.0 1E-32 2.3E-37 253.6 22.8 245 142-434 7-259 (794)
46 KOG0274 Cdc4 and related F-box 100.0 4.9E-32 1.1E-36 261.8 27.8 276 109-438 207-488 (537)
47 KOG0278 Serine/threonine kinas 100.0 6.7E-33 1.5E-37 227.8 16.8 283 105-437 9-302 (334)
48 KOG0266 WD40 repeat-containing 100.0 2.5E-31 5.5E-36 257.9 30.1 262 147-461 158-432 (456)
49 KOG0282 mRNA splicing factor [ 100.0 9.4E-33 2E-37 247.0 16.0 272 137-462 203-485 (503)
50 KOG0292 Vesicle coat complex C 100.0 3.5E-31 7.5E-36 252.4 26.1 281 110-433 9-322 (1202)
51 cd00200 WD40 WD40 domain, foun 100.0 3.6E-30 7.8E-35 236.8 31.9 273 141-473 2-279 (289)
52 PLN00181 protein SPA1-RELATED; 100.0 2.2E-30 4.7E-35 269.9 33.7 301 129-473 457-781 (793)
53 KOG0277 Peroxisomal targeting 100.0 3.8E-31 8.3E-36 218.1 21.4 258 129-431 37-308 (311)
54 KOG0313 Microtubule binding pr 100.0 3.3E-31 7.2E-36 230.2 21.7 269 146-461 103-399 (423)
55 KOG0276 Vesicle coat complex C 100.0 6.3E-31 1.4E-35 241.9 24.1 275 104-427 7-294 (794)
56 KOG0292 Vesicle coat complex C 100.0 3.4E-31 7.5E-36 252.4 22.5 267 142-461 3-302 (1202)
57 KOG0294 WD40 repeat-containing 100.0 6.9E-30 1.5E-34 217.0 27.7 263 123-435 4-284 (362)
58 KOG0275 Conserved WD40 repeat- 100.0 6.7E-32 1.5E-36 229.9 15.2 286 99-430 201-507 (508)
59 KOG0300 WD40 repeat-containing 100.0 1.2E-30 2.6E-35 221.7 22.1 321 99-434 137-478 (481)
60 KOG0289 mRNA splicing factor [ 100.0 6.4E-30 1.4E-34 225.8 27.1 274 112-431 221-505 (506)
61 KOG0293 WD40 repeat-containing 100.0 2.5E-30 5.4E-35 227.0 22.4 280 139-469 215-507 (519)
62 KOG0283 WD40 repeat-containing 100.0 3.2E-30 7E-35 246.1 24.7 251 97-381 253-577 (712)
63 KOG0268 Sof1-like rRNA process 100.0 5E-31 1.1E-35 227.8 17.3 284 100-435 56-348 (433)
64 KOG1446 Histone H3 (Lys4) meth 100.0 1.6E-28 3.4E-33 209.4 30.9 281 106-434 10-305 (311)
65 KOG0288 WD40 repeat protein Ti 100.0 5.1E-31 1.1E-35 231.4 15.9 283 99-430 164-459 (459)
66 KOG1407 WD40 repeat protein [F 100.0 9E-29 1.9E-33 204.9 26.5 277 104-432 14-311 (313)
67 KOG0306 WD40-repeat-containing 100.0 7.4E-29 1.6E-33 232.9 28.4 278 105-433 368-665 (888)
68 KOG0772 Uncharacterized conser 100.0 1E-28 2.2E-33 222.7 26.4 300 98-430 155-485 (641)
69 KOG0277 Peroxisomal targeting 100.0 2.3E-29 4.9E-34 207.7 19.4 233 110-379 60-308 (311)
70 KOG0640 mRNA cleavage stimulat 100.0 3.9E-29 8.4E-34 211.9 21.1 284 104-432 106-426 (430)
71 KOG0643 Translation initiation 100.0 1.3E-28 2.8E-33 204.6 23.7 282 143-472 5-304 (327)
72 KOG0301 Phospholipase A2-activ 100.0 1.5E-28 3.2E-33 229.2 26.7 274 101-433 5-289 (745)
73 KOG0299 U3 snoRNP-associated p 100.0 6.4E-29 1.4E-33 221.3 22.4 294 141-472 135-442 (479)
74 KOG0283 WD40 repeat-containing 100.0 8.3E-29 1.8E-33 236.6 23.7 271 144-434 262-578 (712)
75 KOG0274 Cdc4 and related F-box 100.0 1.5E-28 3.2E-33 237.7 25.4 245 99-384 237-486 (537)
76 PTZ00421 coronin; Provisional 100.0 1.1E-27 2.3E-32 231.5 31.4 233 215-469 70-321 (493)
77 KOG0973 Histone transcription 100.0 3E-28 6.5E-33 238.5 26.9 301 110-434 13-357 (942)
78 KOG0310 Conserved WD40 repeat- 100.0 5.4E-28 1.2E-32 217.0 25.5 275 107-433 23-310 (487)
79 KOG0264 Nucleosome remodeling 100.0 2.6E-28 5.7E-33 217.4 23.4 270 99-434 113-406 (422)
80 KOG0647 mRNA export protein (c 100.0 7.6E-28 1.6E-32 203.5 24.1 274 141-473 20-311 (347)
81 KOG0275 Conserved WD40 repeat- 100.0 7.8E-29 1.7E-33 211.3 17.9 275 147-469 212-503 (508)
82 PTZ00421 coronin; Provisional 100.0 2.5E-27 5.5E-32 229.0 30.4 233 143-407 70-316 (493)
83 KOG0647 mRNA export protein (c 100.0 2.5E-27 5.5E-32 200.3 25.5 257 110-407 27-306 (347)
84 PTZ00420 coronin; Provisional 100.0 9.9E-27 2.1E-31 225.8 32.5 250 126-407 50-319 (568)
85 PTZ00420 coronin; Provisional 100.0 1E-26 2.2E-31 225.7 31.9 244 164-461 50-316 (568)
86 KOG1407 WD40 repeat protein [F 100.0 1.9E-27 4.1E-32 197.1 22.2 264 142-462 14-283 (313)
87 KOG0278 Serine/threonine kinas 100.0 8.5E-29 1.8E-33 203.8 13.3 272 143-474 9-286 (334)
88 KOG0305 Anaphase promoting com 100.0 7.1E-27 1.5E-31 217.8 27.7 264 120-434 188-463 (484)
89 KOG0772 Uncharacterized conser 100.0 1.3E-27 2.8E-32 215.6 20.7 286 142-470 161-482 (641)
90 KOG0641 WD40 repeat protein [G 100.0 1.9E-25 4.1E-30 181.5 31.1 294 100-432 23-349 (350)
91 KOG1539 WD repeat protein [Gen 100.0 1.6E-26 3.5E-31 219.7 28.8 331 92-473 184-635 (910)
92 KOG1446 Histone H3 (Lys4) meth 100.0 9.6E-26 2.1E-30 192.5 30.0 265 142-463 8-287 (311)
93 KOG2096 WD40 repeat protein [G 100.0 7.1E-26 1.5E-30 192.9 28.4 304 95-430 71-400 (420)
94 KOG0310 Conserved WD40 repeat- 100.0 1.9E-27 4.1E-32 213.5 19.8 279 132-472 11-296 (487)
95 KOG0308 Conserved WD40 repeat- 100.0 2.2E-27 4.7E-32 219.8 20.3 269 119-434 36-329 (735)
96 KOG1408 WD40 repeat protein [F 100.0 1.2E-26 2.5E-31 216.9 24.1 332 115-474 329-702 (1080)
97 KOG0268 Sof1-like rRNA process 100.0 8E-28 1.7E-32 208.0 14.3 271 141-474 59-334 (433)
98 KOG4283 Transcription-coupled 100.0 4.3E-26 9.4E-31 192.2 23.6 283 107-432 40-365 (397)
99 KOG0300 WD40 repeat-containing 100.0 1.2E-26 2.6E-31 197.5 20.4 284 122-460 126-453 (481)
100 KOG1063 RNA polymerase II elon 100.0 4E-26 8.7E-31 212.9 25.3 358 99-468 180-681 (764)
101 KOG1036 Mitotic spindle checkp 100.0 1.4E-25 3E-30 190.6 26.2 264 110-422 13-294 (323)
102 KOG1036 Mitotic spindle checkp 100.0 8E-26 1.7E-30 192.0 24.7 265 147-474 12-293 (323)
103 KOG0294 WD40 repeat-containing 100.0 9.3E-26 2E-30 192.0 24.9 240 100-382 33-283 (362)
104 KOG0308 Conserved WD40 repeat- 100.0 3.8E-27 8.1E-32 218.3 17.8 240 158-434 37-287 (735)
105 KOG1332 Vesicle coat complex C 99.9 6.4E-27 1.4E-31 192.2 16.5 240 107-380 8-286 (299)
106 KOG0288 WD40 repeat protein Ti 99.9 2.2E-27 4.8E-32 208.6 14.0 269 140-462 167-442 (459)
107 KOG0321 WD40 repeat-containing 99.9 5.1E-26 1.1E-30 210.3 22.1 277 120-434 64-393 (720)
108 KOG0646 WD40 repeat protein [G 99.9 7.7E-26 1.7E-30 202.1 22.5 285 130-461 18-329 (476)
109 KOG2106 Uncharacterized conser 99.9 3E-24 6.6E-29 193.5 32.6 313 108-474 152-510 (626)
110 KOG0299 U3 snoRNP-associated p 99.9 2.5E-25 5.4E-30 198.5 25.1 282 103-432 135-456 (479)
111 KOG1063 RNA polymerase II elon 99.9 4.1E-25 8.8E-30 206.3 27.0 357 101-474 45-637 (764)
112 KOG1332 Vesicle coat complex C 99.9 4.8E-26 1E-30 187.1 18.3 250 144-433 7-287 (299)
113 KOG0305 Anaphase promoting com 99.9 1.6E-25 3.5E-30 208.7 23.9 261 154-474 183-450 (484)
114 KOG0264 Nucleosome remodeling 99.9 2.6E-25 5.6E-30 198.4 23.7 237 218-462 122-384 (422)
115 KOG0301 Phospholipase A2-activ 99.9 8.8E-26 1.9E-30 210.8 21.4 240 140-432 6-249 (745)
116 KOG1408 WD40 repeat protein [F 99.9 7.1E-26 1.5E-30 211.7 20.4 288 103-433 362-714 (1080)
117 KOG0639 Transducin-like enhanc 99.9 1.2E-25 2.5E-30 202.4 20.9 275 106-431 415-703 (705)
118 KOG0289 mRNA splicing factor [ 99.9 3.8E-25 8.2E-30 195.8 23.7 271 149-474 220-495 (506)
119 KOG2445 Nuclear pore complex c 99.9 1.5E-24 3.3E-29 184.0 25.4 253 145-434 10-320 (361)
120 KOG2106 Uncharacterized conser 99.9 2.9E-24 6.3E-29 193.6 28.0 323 111-459 247-604 (626)
121 KOG0973 Histone transcription 99.9 2.9E-25 6.2E-30 217.8 22.8 280 147-461 12-335 (942)
122 KOG0639 Transducin-like enhanc 99.9 1.1E-25 2.4E-30 202.5 18.2 273 145-474 416-693 (705)
123 KOG0269 WD40 repeat-containing 99.9 8.8E-26 1.9E-30 213.2 18.2 242 151-434 90-342 (839)
124 KOG1274 WD40 repeat protein [G 99.9 4.8E-24 1E-28 205.3 28.1 262 108-407 11-283 (933)
125 KOG1539 WD repeat protein [Gen 99.9 3.7E-23 8E-28 197.1 33.6 356 99-474 65-595 (910)
126 KOG0269 WD40 repeat-containing 99.9 4.1E-25 8.9E-30 208.7 19.2 229 222-470 89-335 (839)
127 KOG0640 mRNA cleavage stimulat 99.9 8.6E-25 1.9E-29 185.7 19.0 287 142-461 106-406 (430)
128 KOG0270 WD40 repeat-containing 99.9 2.4E-24 5.2E-29 191.4 21.0 297 115-436 132-453 (463)
129 KOG0646 WD40 repeat protein [G 99.9 1.4E-23 3E-28 187.8 22.3 247 120-407 50-332 (476)
130 KOG0650 WD40 repeat nucleolar 99.9 4.2E-23 9.2E-28 189.8 25.9 309 99-429 389-732 (733)
131 KOG2445 Nuclear pore complex c 99.9 3.2E-23 6.9E-28 176.1 23.2 259 107-391 10-330 (361)
132 KOG0641 WD40 repeat protein [G 99.9 1.8E-22 3.9E-27 164.2 26.3 246 96-380 75-349 (350)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 6.2E-22 1.3E-26 184.1 32.5 280 120-460 1-299 (300)
134 KOG4328 WD40 protein [Function 99.9 1.4E-22 3E-27 180.9 26.5 290 101-431 177-494 (498)
135 KOG0267 Microtubule severing p 99.9 2.4E-25 5.2E-30 208.7 9.0 227 219-473 27-256 (825)
136 KOG0302 Ribosome Assembly prot 99.9 3.3E-23 7.2E-28 180.5 20.2 263 102-430 143-436 (440)
137 KOG4378 Nuclear protein COP1 [ 99.9 7.4E-23 1.6E-27 184.2 20.3 282 129-462 11-304 (673)
138 KOG0267 Microtubule severing p 99.9 2.6E-24 5.6E-29 201.9 10.5 250 122-424 6-260 (825)
139 KOG2096 WD40 repeat protein [G 99.9 1.5E-22 3.3E-27 172.7 19.6 248 213-473 79-349 (420)
140 KOG2055 WD40 repeat protein [G 99.9 8.1E-22 1.8E-26 176.2 25.0 277 110-432 213-512 (514)
141 KOG2048 WD40 repeat protein [G 99.9 1.8E-21 4E-26 181.7 27.8 266 148-461 25-301 (691)
142 KOG0270 WD40 repeat-containing 99.9 1.3E-22 2.9E-27 180.4 19.4 227 120-383 192-452 (463)
143 KOG4283 Transcription-coupled 99.9 4.5E-22 9.8E-27 168.1 21.5 218 143-384 38-280 (397)
144 KOG4378 Nuclear protein COP1 [ 99.9 1.9E-22 4.1E-27 181.6 19.6 256 113-406 37-305 (673)
145 KOG2048 WD40 repeat protein [G 99.9 4.6E-21 1E-25 179.1 29.1 280 110-433 25-320 (691)
146 KOG0321 WD40 repeat-containing 99.9 2.3E-22 5E-27 186.4 19.6 265 158-462 64-371 (720)
147 KOG1274 WD40 repeat protein [G 99.9 2.5E-21 5.4E-26 186.8 27.1 242 146-434 11-264 (933)
148 KOG1273 WD40 repeat protein [G 99.9 4.2E-21 9E-26 163.8 25.4 283 100-434 15-324 (405)
149 KOG1445 Tumor-specific antigen 99.9 3E-22 6.5E-27 185.3 18.2 118 311-438 629-756 (1012)
150 KOG1188 WD40 repeat protein [G 99.9 1.3E-21 2.8E-26 168.7 19.9 272 121-433 41-347 (376)
151 KOG1034 Transcriptional repres 99.9 1.2E-21 2.7E-26 167.9 18.4 284 106-432 34-383 (385)
152 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.1E-20 4.5E-25 173.8 28.4 252 159-472 2-265 (300)
153 KOG0302 Ribosome Assembly prot 99.9 1.2E-21 2.5E-26 171.0 17.7 236 217-462 148-419 (440)
154 KOG1009 Chromatin assembly com 99.9 1.8E-20 4E-25 165.1 23.7 300 110-434 13-374 (434)
155 KOG0307 Vesicle coat complex C 99.9 8E-22 1.7E-26 194.7 15.8 250 148-436 64-331 (1049)
156 KOG0322 G-protein beta subunit 99.9 2.6E-21 5.6E-26 161.1 15.3 284 103-431 7-322 (323)
157 KOG0650 WD40 repeat nucleolar 99.9 8.9E-21 1.9E-25 174.7 20.0 271 142-462 394-716 (733)
158 KOG1007 WD repeat protein TSSC 99.9 8.8E-21 1.9E-25 159.9 18.1 249 215-473 58-359 (370)
159 KOG4227 WD40 repeat protein [G 99.9 1.7E-20 3.8E-25 164.4 20.5 293 101-432 47-387 (609)
160 KOG2055 WD40 repeat protein [G 99.9 2.4E-20 5.2E-25 166.9 20.9 272 148-472 213-499 (514)
161 KOG2919 Guanine nucleotide-bin 99.9 5.1E-20 1.1E-24 157.7 20.6 263 114-423 55-361 (406)
162 KOG1273 WD40 repeat protein [G 99.9 4.5E-20 9.8E-25 157.5 19.6 262 151-462 26-304 (405)
163 KOG1034 Transcriptional repres 99.9 1.3E-19 2.8E-24 155.6 21.6 281 145-471 35-369 (385)
164 KOG0307 Vesicle coat complex C 99.9 5.4E-21 1.2E-25 188.9 14.5 226 122-383 82-330 (1049)
165 KOG1007 WD repeat protein TSSC 99.9 1.5E-19 3.3E-24 152.5 20.1 278 102-433 55-362 (370)
166 KOG2919 Guanine nucleotide-bin 99.8 3.1E-19 6.8E-24 153.0 21.6 276 152-462 53-351 (406)
167 KOG0649 WD40 repeat protein [G 99.8 1.8E-18 3.8E-23 142.7 24.0 278 114-429 16-313 (325)
168 KOG1538 Uncharacterized conser 99.8 1.7E-19 3.7E-24 168.3 19.4 268 114-434 18-295 (1081)
169 KOG1538 Uncharacterized conser 99.8 2.1E-19 4.6E-24 167.6 19.9 266 71-380 14-293 (1081)
170 KOG1334 WD40 repeat protein [G 99.8 2.3E-20 5E-25 168.1 13.0 294 101-434 133-468 (559)
171 KOG4328 WD40 protein [Function 99.8 1.6E-19 3.4E-24 161.5 18.0 205 216-432 182-399 (498)
172 KOG0644 Uncharacterized conser 99.8 1.1E-20 2.4E-25 180.2 9.5 272 139-471 181-454 (1113)
173 KOG1240 Protein kinase contain 99.8 1.9E-18 4.2E-23 171.5 23.7 294 100-430 1038-1431(1431)
174 KOG0642 Cell-cycle nuclear pro 99.8 2E-19 4.4E-24 165.0 14.0 253 143-434 289-563 (577)
175 KOG1517 Guanine nucleotide bin 99.8 1.1E-17 2.4E-22 163.8 25.2 286 117-434 1073-1383(1387)
176 KOG0642 Cell-cycle nuclear pro 99.8 5.3E-19 1.2E-23 162.2 14.9 264 105-394 289-573 (577)
177 KOG0290 Conserved WD40 repeat- 99.8 1.2E-17 2.5E-22 141.4 21.3 248 145-429 93-362 (364)
178 KOG1009 Chromatin assembly com 99.8 4.4E-18 9.5E-23 150.3 18.8 285 148-474 13-361 (434)
179 KOG1963 WD40 repeat protein [G 99.8 2.5E-16 5.4E-21 152.2 31.6 114 218-338 203-321 (792)
180 KOG0303 Actin-binding protein 99.8 4.7E-18 1E-22 149.5 17.7 205 105-346 76-301 (472)
181 KOG0644 Uncharacterized conser 99.8 3.4E-19 7.5E-24 170.1 10.9 276 100-435 180-471 (1113)
182 KOG0290 Conserved WD40 repeat- 99.8 2.7E-17 5.9E-22 139.2 21.0 230 218-463 94-347 (364)
183 COG2319 FOG: WD40 repeat [Gene 99.8 1.2E-15 2.6E-20 148.5 35.8 284 105-435 60-362 (466)
184 KOG0303 Actin-binding protein 99.8 9.9E-18 2.1E-22 147.5 18.4 206 215-436 76-298 (472)
185 KOG1963 WD40 repeat protein [G 99.8 1.5E-16 3.2E-21 153.8 27.9 284 109-434 204-540 (792)
186 KOG1310 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 153.0 18.4 216 100-337 40-301 (758)
187 KOG4227 WD40 repeat protein [G 99.8 3.4E-17 7.3E-22 143.9 20.4 287 142-472 50-374 (609)
188 KOG1587 Cytoplasmic dynein int 99.8 5.8E-17 1.3E-21 156.2 23.1 236 219-473 241-504 (555)
189 KOG1517 Guanine nucleotide bin 99.8 7.1E-17 1.5E-21 158.3 23.6 279 151-473 1067-1379(1387)
190 COG2319 FOG: WD40 repeat [Gene 99.8 1.1E-15 2.3E-20 148.9 31.9 266 142-459 59-336 (466)
191 PRK11028 6-phosphogluconolacto 99.8 9.7E-16 2.1E-20 144.1 29.8 269 123-433 5-305 (330)
192 KOG1445 Tumor-specific antigen 99.8 1.4E-17 3E-22 154.8 16.2 246 153-439 586-851 (1012)
193 KOG1587 Cytoplasmic dynein int 99.8 1.9E-16 4.2E-21 152.6 24.0 272 129-434 221-518 (555)
194 KOG1523 Actin-related protein 99.8 6E-16 1.3E-20 132.9 22.7 205 108-342 8-239 (361)
195 KOG0322 G-protein beta subunit 99.7 6.1E-17 1.3E-21 135.3 15.4 280 139-473 5-311 (323)
196 PRK11028 6-phosphogluconolacto 99.7 7.8E-15 1.7E-19 138.0 29.2 232 221-472 35-290 (330)
197 KOG0649 WD40 repeat protein [G 99.7 1.9E-15 4.1E-20 125.0 21.0 232 157-433 21-275 (325)
198 PRK01742 tolB translocation pr 99.7 1.7E-15 3.7E-20 147.0 24.6 220 218-462 201-426 (429)
199 KOG2110 Uncharacterized conser 99.7 5.4E-14 1.2E-18 123.4 29.5 227 112-381 7-249 (391)
200 KOG0771 Prolactin regulatory e 99.7 2.6E-16 5.7E-21 140.1 15.3 196 224-433 148-355 (398)
201 KOG1188 WD40 repeat protein [G 99.7 4.1E-16 8.9E-21 135.0 16.0 194 233-437 41-247 (376)
202 KOG1524 WD40 repeat-containing 99.7 1.2E-15 2.7E-20 139.4 17.7 197 232-473 75-274 (737)
203 PRK01742 tolB translocation pr 99.7 4.7E-15 1E-19 143.9 21.6 231 129-405 183-426 (429)
204 KOG1524 WD40 repeat-containing 99.7 6.4E-15 1.4E-19 134.8 19.9 256 108-429 12-283 (737)
205 KOG1310 WD40 repeat protein [G 99.7 2.2E-15 4.7E-20 138.2 15.7 249 140-440 42-311 (758)
206 KOG1240 Protein kinase contain 99.7 1.9E-14 4E-19 143.8 23.3 262 135-435 1034-1337(1431)
207 KOG1334 WD40 repeat protein [G 99.7 1.9E-15 4E-20 136.8 14.5 275 141-461 135-446 (559)
208 KOG1523 Actin-related protein 99.7 2.9E-14 6.4E-19 122.7 21.1 229 147-407 9-262 (361)
209 KOG0771 Prolactin regulatory e 99.7 3.2E-15 6.9E-20 133.3 15.3 196 152-381 148-355 (398)
210 KOG2110 Uncharacterized conser 99.6 5E-13 1.1E-17 117.4 27.7 236 110-381 46-331 (391)
211 KOG2139 WD40 repeat protein [G 99.6 6.3E-14 1.4E-18 122.5 20.5 299 113-471 101-417 (445)
212 KOG2394 WD40 protein DMR-N9 [G 99.6 3.8E-13 8.2E-18 123.5 26.1 194 219-435 218-455 (636)
213 PRK03629 tolB translocation pr 99.6 4E-13 8.7E-18 130.1 28.1 215 219-461 197-427 (429)
214 KOG2321 WD40 repeat protein [G 99.6 2.1E-13 4.5E-18 126.1 23.0 283 108-437 49-348 (703)
215 KOG3881 Uncharacterized conser 99.6 5.5E-14 1.2E-18 124.1 17.7 261 109-406 54-343 (412)
216 KOG1354 Serine/threonine prote 99.6 1.9E-13 4.2E-18 118.8 20.4 275 107-383 22-362 (433)
217 KOG1272 WD40-repeat-containing 99.6 5E-15 1.1E-19 133.3 10.2 251 114-407 133-392 (545)
218 KOG3881 Uncharacterized conser 99.6 1.5E-13 3.2E-18 121.5 18.1 216 105-349 100-330 (412)
219 KOG1409 Uncharacterized conser 99.6 5.5E-13 1.2E-17 116.0 19.8 249 100-382 14-272 (404)
220 PRK02889 tolB translocation pr 99.6 2.2E-12 4.7E-17 125.2 26.0 219 219-461 194-424 (427)
221 PF02239 Cytochrom_D1: Cytochr 99.5 4.3E-12 9.4E-17 119.3 26.1 292 120-470 5-330 (369)
222 KOG2394 WD40 protein DMR-N9 [G 99.5 3.1E-13 6.8E-18 124.0 17.5 188 120-319 185-384 (636)
223 KOG1272 WD40-repeat-containing 99.5 1.8E-14 3.9E-19 129.7 8.8 194 223-435 132-326 (545)
224 KOG4497 Uncharacterized conser 99.5 1.6E-12 3.4E-17 112.5 20.1 291 110-461 10-412 (447)
225 KOG2111 Uncharacterized conser 99.5 7.5E-11 1.6E-15 101.9 29.9 227 114-381 9-257 (346)
226 PRK04922 tolB translocation pr 99.5 4.1E-12 9E-17 123.6 25.3 195 219-433 202-412 (433)
227 PRK03629 tolB translocation pr 99.5 6.4E-12 1.4E-16 121.8 26.0 232 131-405 180-428 (429)
228 KOG0974 WD-repeat protein WDR6 99.5 1.4E-12 3E-17 128.9 20.8 196 222-434 89-290 (967)
229 PRK05137 tolB translocation pr 99.5 1.5E-11 3.2E-16 120.0 27.5 196 218-434 199-414 (435)
230 KOG2111 Uncharacterized conser 99.5 3.9E-11 8.5E-16 103.7 25.3 180 242-435 75-259 (346)
231 PRK04922 tolB translocation pr 99.5 1.5E-11 3.3E-16 119.7 24.5 230 130-404 184-432 (433)
232 PRK02889 tolB translocation pr 99.4 5E-11 1.1E-15 115.7 24.5 244 119-405 163-425 (427)
233 KOG0280 Uncharacterized conser 99.4 7.1E-11 1.5E-15 100.9 21.8 267 129-434 45-335 (339)
234 PRK05137 tolB translocation pr 99.4 1E-10 2.2E-15 114.0 26.0 228 131-404 183-432 (435)
235 KOG2139 WD40 repeat protein [G 99.4 3.7E-11 8.1E-16 105.5 19.2 201 220-433 98-310 (445)
236 PF08662 eIF2A: Eukaryotic tra 99.4 3E-11 6.6E-16 103.2 17.6 148 225-382 10-181 (194)
237 PRK00178 tolB translocation pr 99.4 4.6E-10 1E-14 109.6 28.0 195 219-432 197-406 (430)
238 PF10282 Lactonase: Lactonase, 99.4 1.1E-08 2.4E-13 96.5 34.7 272 123-433 2-323 (345)
239 PF08662 eIF2A: Eukaryotic tra 99.4 9.3E-11 2E-15 100.2 18.4 150 266-433 9-180 (194)
240 PRK04792 tolB translocation pr 99.4 8.1E-10 1.8E-14 107.6 27.4 194 219-431 216-424 (448)
241 TIGR02800 propeller_TolB tol-p 99.4 5E-10 1.1E-14 109.2 26.1 186 219-424 188-386 (417)
242 PF10282 Lactonase: Lactonase, 99.4 2.8E-09 6.1E-14 100.5 29.9 239 220-472 36-308 (345)
243 TIGR03300 assembly_YfgL outer 99.4 2.5E-09 5.5E-14 102.6 30.1 268 116-435 61-341 (377)
244 KOG0974 WD-repeat protein WDR6 99.3 2.7E-10 5.8E-15 113.0 22.9 184 116-339 95-288 (967)
245 KOG1064 RAVE (regulator of V-A 99.3 8E-12 1.7E-16 129.6 12.7 192 145-383 2205-2401(2439)
246 KOG2321 WD40 repeat protein [G 99.3 2.7E-10 5.9E-15 105.9 21.1 242 146-436 49-306 (703)
247 KOG1354 Serine/threonine prote 99.3 1.2E-10 2.7E-15 101.6 17.8 265 146-435 23-362 (433)
248 KOG4497 Uncharacterized conser 99.3 2.4E-09 5.2E-14 93.1 23.6 289 112-426 50-426 (447)
249 KOG2041 WD40 repeat protein [G 99.3 7.8E-10 1.7E-14 105.4 22.4 263 111-407 15-321 (1189)
250 COG5354 Uncharacterized protei 99.3 3.7E-09 8E-14 97.2 25.9 300 114-434 38-397 (561)
251 TIGR03300 assembly_YfgL outer 99.3 4.1E-09 8.8E-14 101.2 27.9 263 116-429 101-376 (377)
252 COG5170 CDC55 Serine/threonine 99.3 2.8E-10 6.2E-15 98.0 17.2 269 109-380 25-367 (460)
253 KOG1409 Uncharacterized conser 99.3 5E-10 1.1E-14 97.9 17.5 238 215-470 19-265 (404)
254 KOG0280 Uncharacterized conser 99.3 1.3E-09 2.9E-14 93.3 19.7 210 240-463 44-265 (339)
255 KOG4547 WD40 repeat-containing 99.3 1E-09 2.2E-14 102.7 20.2 194 230-434 3-222 (541)
256 PF02239 Cytochrom_D1: Cytochr 99.2 2.8E-08 6E-13 93.7 29.8 299 98-434 24-349 (369)
257 KOG4547 WD40 repeat-containing 99.2 1.1E-09 2.4E-14 102.4 19.8 183 120-340 5-221 (541)
258 TIGR02800 propeller_TolB tol-p 99.2 2.9E-09 6.3E-14 103.8 23.9 209 131-381 171-398 (417)
259 PRK00178 tolB translocation pr 99.2 7.5E-09 1.6E-13 101.2 25.5 229 132-405 181-428 (430)
260 KOG0309 Conserved WD40 repeat- 99.2 1.6E-10 3.5E-15 110.3 12.8 285 113-433 29-340 (1081)
261 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.9E-07 4.1E-12 86.2 31.6 268 130-435 27-333 (352)
262 PRK04792 tolB translocation pr 99.2 1E-08 2.3E-13 99.9 24.8 229 131-404 199-446 (448)
263 PRK01029 tolB translocation pr 99.2 1.7E-08 3.7E-13 97.7 25.1 201 220-434 184-405 (428)
264 KOG2315 Predicted translation 99.1 7.4E-08 1.6E-12 89.9 26.1 299 112-433 38-391 (566)
265 KOG4190 Uncharacterized conser 99.1 1.8E-10 3.8E-15 106.7 8.9 252 141-428 728-1032(1034)
266 KOG4714 Nucleoporin [Nuclear s 99.1 7.4E-10 1.6E-14 93.2 11.8 230 113-378 39-316 (319)
267 PRK01029 tolB translocation pr 99.1 6.2E-08 1.3E-12 93.8 26.4 236 131-405 166-425 (428)
268 KOG1064 RAVE (regulator of V-A 99.1 9.7E-10 2.1E-14 114.6 13.8 191 215-434 2203-2400(2439)
269 COG2706 3-carboxymuconate cycl 99.1 1.1E-06 2.3E-11 78.3 30.7 265 129-434 15-323 (346)
270 KOG2041 WD40 repeat protein [G 99.1 2E-09 4.4E-14 102.7 13.7 216 219-438 13-253 (1189)
271 COG4946 Uncharacterized protei 99.1 2.2E-07 4.8E-12 85.1 26.0 168 120-328 332-507 (668)
272 COG2706 3-carboxymuconate cycl 99.1 7.4E-07 1.6E-11 79.3 27.9 236 219-472 38-307 (346)
273 COG4946 Uncharacterized protei 99.0 2.1E-07 4.5E-12 85.2 23.3 210 229-471 275-504 (668)
274 PLN02919 haloacid dehalogenase 99.0 6.5E-07 1.4E-11 95.7 30.0 207 221-436 624-892 (1057)
275 KOG4532 WD40-like repeat conta 99.0 8.9E-08 1.9E-12 81.3 18.5 196 231-438 83-288 (344)
276 PRK11138 outer membrane biogen 99.0 4.4E-07 9.6E-12 87.5 25.8 265 117-431 117-393 (394)
277 KOG2315 Predicted translation 99.0 2.3E-07 5E-12 86.7 21.9 249 114-406 129-412 (566)
278 KOG1912 WD40 repeat protein [G 99.0 4.2E-08 9.1E-13 94.8 17.3 338 98-461 43-477 (1062)
279 PF04762 IKI3: IKI3 family; I 98.9 1.6E-06 3.4E-11 91.1 30.3 309 110-434 75-458 (928)
280 PRK11138 outer membrane biogen 98.9 1E-06 2.3E-11 84.9 26.1 268 119-436 68-357 (394)
281 KOG4714 Nucleoporin [Nuclear s 98.9 2E-08 4.3E-13 84.8 12.1 205 151-381 39-255 (319)
282 KOG4532 WD40-like repeat conta 98.9 2.3E-07 5.1E-12 78.8 18.4 190 120-344 84-287 (344)
283 KOG0309 Conserved WD40 repeat- 98.9 2.6E-08 5.6E-13 95.7 13.7 267 150-461 26-309 (1081)
284 KOG3914 WD repeat protein WDR4 98.9 4.4E-08 9.4E-13 87.8 14.1 157 222-383 64-226 (390)
285 KOG4190 Uncharacterized conser 98.9 2.7E-09 5.9E-14 99.0 6.6 211 209-433 724-949 (1034)
286 KOG0882 Cyclophilin-related pe 98.9 3.9E-08 8.4E-13 89.3 13.7 246 108-383 7-308 (558)
287 PLN02919 haloacid dehalogenase 98.9 2E-06 4.4E-11 92.0 28.9 248 120-384 580-892 (1057)
288 PRK04043 tolB translocation pr 98.9 3.7E-06 8E-11 81.0 27.8 173 222-408 189-381 (419)
289 KOG2314 Translation initiation 98.9 2.6E-06 5.6E-11 79.8 24.8 304 110-474 212-556 (698)
290 PF15492 Nbas_N: Neuroblastoma 98.9 5.6E-06 1.2E-10 71.7 25.2 191 222-435 45-262 (282)
291 PF13360 PQQ_2: PQQ-like domai 98.8 2.5E-06 5.4E-11 76.2 23.5 222 167-435 2-233 (238)
292 COG5170 CDC55 Serine/threonine 98.8 1.1E-07 2.4E-12 82.4 13.5 256 147-430 25-365 (460)
293 KOG2114 Vacuolar assembly/sort 98.8 1.1E-06 2.5E-11 86.3 21.9 223 112-359 27-263 (933)
294 TIGR02658 TTQ_MADH_Hv methylam 98.8 3.3E-05 7.1E-10 71.6 30.5 254 99-384 36-334 (352)
295 KOG2314 Translation initiation 98.8 1.6E-06 3.4E-11 81.1 21.1 309 76-433 217-574 (698)
296 PF04762 IKI3: IKI3 family; I 98.7 2.2E-05 4.9E-10 82.6 30.4 234 147-430 74-377 (928)
297 KOG3914 WD repeat protein WDR4 98.7 2.7E-07 5.8E-12 82.9 13.7 158 265-437 65-228 (390)
298 KOG2066 Vacuolar assembly/sort 98.7 9.1E-07 2E-11 86.3 17.3 183 148-380 39-233 (846)
299 KOG2695 WD40 repeat protein [G 98.7 7.4E-08 1.6E-12 84.7 9.1 145 275-435 226-379 (425)
300 KOG2695 WD40 repeat protein [G 98.7 1.3E-07 2.8E-12 83.2 10.1 165 236-404 228-402 (425)
301 PF13360 PQQ_2: PQQ-like domai 98.7 1.4E-05 3E-10 71.4 23.8 188 157-384 35-234 (238)
302 COG5354 Uncharacterized protei 98.7 1.1E-05 2.4E-10 75.0 22.7 241 144-434 28-308 (561)
303 PF08450 SGL: SMP-30/Gluconola 98.7 7.7E-05 1.7E-09 66.9 28.5 199 120-350 12-223 (246)
304 KOG1912 WD40 repeat protein [G 98.6 4.9E-06 1.1E-10 81.0 20.0 236 151-433 18-305 (1062)
305 KOG0882 Cyclophilin-related pe 98.6 1E-06 2.2E-11 80.3 14.4 247 146-435 7-308 (558)
306 PF08450 SGL: SMP-30/Gluconola 98.6 3.8E-05 8.2E-10 68.9 24.8 192 225-432 4-213 (246)
307 KOG1275 PAB-dependent poly(A) 98.6 1.2E-06 2.5E-11 86.7 14.6 181 120-337 147-340 (1118)
308 PF00400 WD40: WD domain, G-be 98.6 2.4E-07 5.2E-12 56.3 6.2 37 386-430 3-39 (39)
309 KOG2066 Vacuolar assembly/sort 98.6 2.2E-06 4.7E-11 83.8 15.7 188 110-339 39-233 (846)
310 KOG3621 WD40 repeat-containing 98.5 3E-05 6.4E-10 75.1 21.7 135 112-272 37-180 (726)
311 KOG1645 RING-finger-containing 98.5 4.2E-06 9.2E-11 75.4 15.1 79 215-294 188-269 (463)
312 PF15492 Nbas_N: Neuroblastoma 98.5 1.9E-05 4E-10 68.5 18.3 190 114-343 49-263 (282)
313 cd00216 PQQ_DH Dehydrogenases 98.5 0.00028 6.2E-09 69.9 29.6 278 119-438 60-430 (488)
314 KOG2114 Vacuolar assembly/sort 98.5 1.3E-05 2.9E-10 79.1 19.2 202 222-436 27-247 (933)
315 KOG1275 PAB-dependent poly(A) 98.5 1.1E-05 2.4E-10 80.1 18.3 183 231-430 146-340 (1118)
316 PF00400 WD40: WD domain, G-be 98.5 4.3E-07 9.4E-12 55.2 5.6 35 214-248 5-39 (39)
317 PF08596 Lgl_C: Lethal giant l 98.5 0.00019 4E-09 68.2 25.9 192 215-407 81-319 (395)
318 PRK04043 tolB translocation pr 98.5 0.0002 4.3E-09 69.2 26.1 190 150-383 189-403 (419)
319 KOG1008 Uncharacterized conser 98.4 1.7E-07 3.6E-12 89.1 4.4 238 219-466 55-318 (783)
320 KOG1832 HIV-1 Vpr-binding prot 98.4 1.8E-07 3.8E-12 91.9 4.1 191 214-434 1095-1293(1516)
321 PF11768 DUF3312: Protein of u 98.4 0.0016 3.5E-08 62.5 28.4 116 221-344 206-334 (545)
322 KOG1920 IkappaB kinase complex 98.3 9.5E-05 2.1E-09 76.0 20.9 237 148-433 68-323 (1265)
323 KOG3621 WD40 repeat-containing 98.3 1.7E-05 3.7E-10 76.7 13.6 163 219-382 32-199 (726)
324 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0017 3.7E-08 55.7 23.3 137 121-290 24-164 (354)
325 PF08596 Lgl_C: Lethal giant l 98.2 0.00041 8.8E-09 66.0 21.5 209 222-435 3-293 (395)
326 cd00216 PQQ_DH Dehydrogenases 98.2 0.001 2.3E-08 65.9 25.2 241 121-385 111-429 (488)
327 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0025 5.5E-08 54.7 22.7 138 158-336 23-162 (354)
328 KOG1008 Uncharacterized conser 98.2 2.2E-06 4.7E-11 81.7 4.8 194 149-380 57-275 (783)
329 KOG1832 HIV-1 Vpr-binding prot 98.1 2.8E-06 6E-11 83.9 5.2 197 139-383 1092-1294(1516)
330 PF06433 Me-amine-dh_H: Methyl 98.1 0.0062 1.3E-07 55.5 27.6 199 224-435 98-323 (342)
331 PF07433 DUF1513: Protein of u 98.1 0.0063 1.4E-07 54.8 26.6 225 160-434 19-285 (305)
332 PRK02888 nitrous-oxide reducta 98.1 0.0013 2.9E-08 64.6 22.5 212 227-472 199-448 (635)
333 PF03178 CPSF_A: CPSF A subuni 98.1 0.0014 3.1E-08 61.3 22.4 180 242-433 2-203 (321)
334 PF11768 DUF3312: Protein of u 98.1 7.4E-05 1.6E-09 71.4 13.1 74 218-293 257-331 (545)
335 PF08553 VID27: VID27 cytoplas 98.1 0.00019 4E-09 73.0 16.5 137 239-379 501-646 (794)
336 KOG1920 IkappaB kinase complex 98.0 0.0027 5.8E-08 65.9 23.2 225 111-341 69-324 (1265)
337 PF06977 SdiA-regulated: SdiA- 98.0 0.0081 1.8E-07 53.1 23.4 201 218-429 19-247 (248)
338 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0011 2.4E-08 49.6 14.3 100 223-334 2-109 (111)
339 PF04841 Vps16_N: Vps16, N-ter 97.9 0.0055 1.2E-07 59.1 23.1 66 113-178 33-111 (410)
340 KOG3617 WD40 and TPR repeat-co 97.9 0.00014 3.1E-09 71.9 12.0 71 223-293 62-133 (1416)
341 PRK02888 nitrous-oxide reducta 97.9 0.0021 4.6E-08 63.2 19.9 108 230-340 286-405 (635)
342 KOG2444 WD40 repeat protein [G 97.9 2.7E-05 5.9E-10 65.3 6.0 142 275-434 32-179 (238)
343 KOG3617 WD40 and TPR repeat-co 97.9 0.00049 1.1E-08 68.3 15.4 105 113-250 20-131 (1416)
344 KOG1645 RING-finger-containing 97.9 0.00024 5.2E-09 64.4 12.1 128 244-380 175-315 (463)
345 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.0026 5.5E-08 60.4 19.0 231 220-472 42-344 (353)
346 PF00780 CNH: CNH domain; Int 97.7 0.036 7.7E-07 50.6 25.7 224 156-435 5-258 (275)
347 PF14583 Pectate_lyase22: Olig 97.7 0.011 2.4E-07 54.9 20.5 227 226-474 86-369 (386)
348 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0023 5.1E-08 47.9 13.0 55 121-176 16-71 (111)
349 PF07433 DUF1513: Protein of u 97.7 0.04 8.7E-07 49.7 23.2 155 158-344 62-252 (305)
350 PF04841 Vps16_N: Vps16, N-ter 97.7 0.0095 2E-07 57.5 20.4 188 226-433 34-247 (410)
351 PF04053 Coatomer_WDAD: Coatom 97.6 0.018 3.9E-07 55.8 21.3 215 115-380 39-262 (443)
352 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.12 2.6E-06 51.7 27.9 66 120-185 69-147 (527)
353 KOG2395 Protein involved in va 97.5 0.0023 4.9E-08 60.5 13.2 142 235-380 349-500 (644)
354 PF00780 CNH: CNH domain; Int 97.5 0.077 1.7E-06 48.4 26.1 246 117-392 4-265 (275)
355 PF03178 CPSF_A: CPSF A subuni 97.5 0.098 2.1E-06 49.0 26.0 187 232-429 42-262 (321)
356 COG3391 Uncharacterized conser 97.5 0.057 1.2E-06 51.7 22.5 195 223-434 76-285 (381)
357 KOG4640 Anaphase-promoting com 97.4 0.00068 1.5E-08 65.3 9.0 94 220-319 20-115 (665)
358 COG3386 Gluconolactonase [Carb 97.4 0.057 1.2E-06 49.6 21.3 217 122-369 39-274 (307)
359 COG0823 TolB Periplasmic compo 97.4 0.012 2.6E-07 56.7 17.0 191 252-473 182-387 (425)
360 COG3391 Uncharacterized conser 97.4 0.12 2.6E-06 49.5 23.7 211 158-406 85-310 (381)
361 COG3386 Gluconolactonase [Carb 97.4 0.12 2.5E-06 47.6 22.9 173 223-405 68-265 (307)
362 COG0823 TolB Periplasmic compo 97.3 0.012 2.6E-07 56.7 16.4 159 219-383 191-361 (425)
363 PF08553 VID27: VID27 cytoplas 97.3 0.022 4.8E-07 58.4 18.8 136 128-291 502-647 (794)
364 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.22 4.8E-06 49.9 27.2 175 117-295 117-337 (527)
365 PF04053 Coatomer_WDAD: Coatom 97.3 0.067 1.4E-06 51.9 21.1 185 221-433 69-263 (443)
366 smart00320 WD40 WD40 repeats. 97.3 0.00073 1.6E-08 39.8 4.8 37 386-430 4-40 (40)
367 smart00320 WD40 WD40 repeats. 97.0 0.0019 4.1E-08 37.9 5.2 38 252-289 2-40 (40)
368 PF06433 Me-amine-dh_H: Methyl 97.0 0.3 6.6E-06 44.8 24.0 151 233-385 148-325 (342)
369 KOG4640 Anaphase-promoting com 96.9 0.0044 9.4E-08 59.9 8.8 93 262-361 20-114 (665)
370 PHA02713 hypothetical protein; 96.9 0.046 1E-06 55.2 16.7 188 231-435 303-536 (557)
371 PHA02713 hypothetical protein; 96.9 0.088 1.9E-06 53.2 17.9 66 320-385 463-538 (557)
372 PF07995 GSDH: Glucose / Sorbo 96.9 0.42 9.1E-06 44.8 21.5 107 222-330 3-134 (331)
373 PF06977 SdiA-regulated: SdiA- 96.8 0.31 6.8E-06 43.2 20.4 200 145-377 18-247 (248)
374 KOG2079 Vacuolar assembly/sort 96.8 0.007 1.5E-07 62.2 9.4 111 148-291 89-203 (1206)
375 KOG4441 Proteins containing BT 96.7 0.16 3.6E-06 51.2 18.0 191 225-434 327-548 (571)
376 KOG2444 WD40 repeat protein [G 96.6 0.0069 1.5E-07 51.3 6.7 137 123-291 33-177 (238)
377 PRK13616 lipoprotein LpqB; Pro 96.5 0.54 1.2E-05 47.6 20.3 149 223-376 399-564 (591)
378 KOG2395 Protein involved in va 96.5 0.058 1.2E-06 51.5 12.3 109 223-338 378-499 (644)
379 PF14727 PHTB1_N: PTHB1 N-term 96.5 0.9 1.9E-05 43.6 28.4 277 120-434 37-362 (418)
380 KOG4499 Ca2+-binding protein R 96.4 0.5 1.1E-05 40.5 18.3 49 356-406 217-265 (310)
381 KOG4441 Proteins containing BT 96.4 0.54 1.2E-05 47.5 20.0 227 120-385 285-551 (571)
382 PF12894 Apc4_WD40: Anaphase-p 96.4 0.012 2.6E-07 36.8 5.3 35 219-254 10-44 (47)
383 PF14870 PSII_BNR: Photosynthe 96.4 0.75 1.6E-05 42.1 25.8 155 219-377 143-301 (302)
384 TIGR03074 PQQ_membr_DH membran 96.4 0.82 1.8E-05 47.7 21.2 216 158-385 194-482 (764)
385 KOG1916 Nuclear protein, conta 96.3 0.021 4.6E-07 57.7 9.1 173 258-434 128-325 (1283)
386 KOG4499 Ca2+-binding protein R 96.2 0.13 2.9E-06 43.9 11.8 122 130-274 139-265 (310)
387 PF00930 DPPIV_N: Dipeptidyl p 96.2 1.2 2.6E-05 42.3 22.2 140 262-408 183-341 (353)
388 PF10647 Gmad1: Lipoprotein Lp 96.1 0.22 4.8E-06 44.6 14.0 152 311-473 25-183 (253)
389 TIGR02604 Piru_Ver_Nterm putat 95.9 1.7 3.7E-05 41.5 22.1 147 221-369 14-202 (367)
390 PHA03098 kelch-like protein; P 95.9 0.5 1.1E-05 47.8 17.0 188 231-434 294-513 (534)
391 PHA03098 kelch-like protein; P 95.9 0.62 1.3E-05 47.1 17.7 155 231-391 342-522 (534)
392 PRK13616 lipoprotein LpqB; Pro 95.7 1.2 2.5E-05 45.3 18.4 174 241-433 328-526 (591)
393 PF12894 Apc4_WD40: Anaphase-p 95.6 0.036 7.9E-07 34.6 4.8 31 394-432 11-41 (47)
394 COG5276 Uncharacterized conser 95.6 1.6 3.5E-05 39.0 26.1 202 220-437 86-290 (370)
395 PF05694 SBP56: 56kDa selenium 95.3 0.49 1.1E-05 44.8 13.0 120 224-344 184-347 (461)
396 COG4257 Vgb Streptogramin lyas 95.3 2 4.2E-05 38.0 16.5 191 222-433 63-263 (353)
397 PF02897 Peptidase_S9_N: Proly 95.2 3.2 7E-05 40.3 25.9 199 222-432 125-357 (414)
398 PF15390 DUF4613: Domain of un 95.2 0.69 1.5E-05 45.2 13.9 170 263-471 20-207 (671)
399 PHA02790 Kelch-like protein; P 95.2 1.6 3.5E-05 43.4 17.3 183 231-434 271-472 (480)
400 KOG2079 Vacuolar assembly/sort 95.1 0.14 3E-06 53.2 9.4 102 320-433 98-204 (1206)
401 KOG3630 Nuclear pore complex, 94.9 0.25 5.3E-06 51.8 10.7 137 221-363 101-254 (1405)
402 COG3204 Uncharacterized protei 94.9 2.6 5.7E-05 37.7 20.3 164 219-382 84-265 (316)
403 KOG2377 Uncharacterized conser 94.9 1.1 2.5E-05 42.3 14.0 137 266-407 26-166 (657)
404 PF12234 Rav1p_C: RAVE protein 94.7 2 4.3E-05 43.5 16.3 118 304-431 24-155 (631)
405 PF14583 Pectate_lyase22: Olig 94.6 4.1 8.9E-05 38.4 27.1 180 242-433 168-382 (386)
406 PF12234 Rav1p_C: RAVE protein 94.5 1.9 4.1E-05 43.6 15.4 115 223-339 32-156 (631)
407 KOG1916 Nuclear protein, conta 94.4 0.0095 2.1E-07 60.1 -0.6 119 129-274 110-236 (1283)
408 PF05096 Glu_cyclase_2: Glutam 94.4 3.5 7.7E-05 36.6 19.7 183 223-421 47-250 (264)
409 PF08728 CRT10: CRT10; InterP 94.1 4.7 0.0001 41.3 17.4 112 223-338 103-245 (717)
410 TIGR03074 PQQ_membr_DH membran 94.1 9.1 0.0002 40.3 20.1 202 232-438 194-483 (764)
411 COG5276 Uncharacterized conser 94.0 4.4 9.5E-05 36.3 30.8 275 109-432 85-369 (370)
412 KOG2280 Vacuolar assembly/sort 94.0 8.2 0.00018 39.3 20.8 49 131-179 65-115 (829)
413 COG3490 Uncharacterized protei 93.9 3.6 7.8E-05 36.6 14.1 259 118-432 45-348 (366)
414 KOG3630 Nuclear pore complex, 93.9 1 2.2E-05 47.6 12.4 145 263-407 101-256 (1405)
415 PF15390 DUF4613: Domain of un 93.9 4.1 8.8E-05 40.2 15.7 119 217-340 53-187 (671)
416 KOG1897 Damage-specific DNA bi 93.9 9.9 0.00021 40.0 25.9 240 131-405 471-725 (1096)
417 KOG2247 WD40 repeat-containing 93.7 0.024 5.1E-07 53.5 0.7 139 118-288 44-185 (615)
418 PF02897 Peptidase_S9_N: Proly 93.6 7.5 0.00016 37.8 28.0 200 225-435 174-407 (414)
419 PF14655 RAB3GAP2_N: Rab3 GTPa 93.6 7.2 0.00016 37.5 28.1 78 307-385 305-403 (415)
420 COG3292 Predicted periplasmic 93.5 8.4 0.00018 37.9 17.3 266 110-428 164-443 (671)
421 PF10313 DUF2415: Uncharacteri 93.4 0.38 8.2E-06 29.1 5.3 34 310-343 1-37 (43)
422 PF10168 Nup88: Nuclear pore c 93.1 4.5 9.7E-05 42.1 15.8 27 222-249 86-112 (717)
423 KOG2714 SETA binding protein S 93.0 2.1 4.6E-05 40.2 12.0 133 158-342 235-374 (465)
424 COG1520 FOG: WD40-like repeat 92.9 9 0.0002 36.6 21.9 146 231-384 111-272 (370)
425 PLN02153 epithiospecifier prot 92.7 9 0.00019 36.1 20.6 55 331-385 217-289 (341)
426 PHA02790 Kelch-like protein; P 92.6 8.9 0.00019 38.2 16.9 143 231-384 318-474 (480)
427 PF10313 DUF2415: Uncharacteri 92.5 0.7 1.5E-05 28.0 5.5 31 221-251 1-34 (43)
428 PF10168 Nup88: Nuclear pore c 92.4 16 0.00034 38.2 18.8 35 219-253 145-182 (717)
429 PF05694 SBP56: 56kDa selenium 92.2 11 0.00024 36.1 17.8 194 231-437 86-347 (461)
430 KOG1983 Tomosyn and related SN 91.9 5.3 0.00011 43.4 15.1 72 308-384 197-268 (993)
431 PF08728 CRT10: CRT10; InterP 91.9 5 0.00011 41.2 14.0 120 311-432 102-246 (717)
432 COG5167 VID27 Protein involved 91.9 3.7 8.1E-05 39.6 12.2 140 231-380 478-632 (776)
433 PF07569 Hira: TUP1-like enhan 91.9 1 2.2E-05 39.3 8.2 64 228-291 18-95 (219)
434 COG4590 ABC-type uncharacteriz 91.8 7.2 0.00016 37.2 13.8 171 257-440 215-394 (733)
435 KOG1897 Damage-specific DNA bi 91.8 20 0.00042 37.9 31.0 157 243-407 471-642 (1096)
436 PLN02193 nitrile-specifier pro 91.8 15 0.00032 36.5 20.9 69 320-388 328-418 (470)
437 PF14655 RAB3GAP2_N: Rab3 GTPa 91.8 1.8 3.9E-05 41.6 10.3 78 218-295 305-402 (415)
438 PF10433 MMS1_N: Mono-function 91.7 16 0.00034 36.7 26.1 248 120-404 222-503 (504)
439 PF07569 Hira: TUP1-like enhan 91.7 1.5 3.2E-05 38.3 9.0 71 354-433 14-96 (219)
440 PF02333 Phytase: Phytase; In 91.3 13 0.00029 35.2 23.6 198 230-434 66-292 (381)
441 KOG4460 Nuclear pore complex, 91.2 5.5 0.00012 38.7 12.6 26 222-247 105-130 (741)
442 TIGR02604 Piru_Ver_Nterm putat 91.1 7.7 0.00017 37.0 14.1 136 264-407 15-196 (367)
443 KOG1983 Tomosyn and related SN 90.5 6.2 0.00013 42.8 13.9 31 221-251 36-66 (993)
444 PRK13684 Ycf48-like protein; P 90.2 16 0.00035 34.3 26.2 154 220-379 172-330 (334)
445 COG3490 Uncharacterized protei 89.9 14 0.00031 33.1 15.3 101 265-369 70-180 (366)
446 PRK10115 protease 2; Provision 89.7 29 0.00062 36.4 23.3 194 222-433 128-345 (686)
447 COG4590 ABC-type uncharacteriz 89.7 2.1 4.5E-05 40.6 8.4 162 219-383 219-389 (733)
448 KOG1898 Splicing factor 3b, su 89.2 34 0.00074 36.6 19.7 175 244-434 855-1050(1205)
449 PF12657 TFIIIC_delta: Transcr 89.0 3.1 6.6E-05 34.8 8.5 38 395-434 86-123 (173)
450 TIGR03118 PEPCTERM_chp_1 conse 88.6 19 0.00041 32.8 22.2 209 222-435 24-282 (336)
451 KOG2377 Uncharacterized conser 88.5 15 0.00033 35.2 13.0 104 219-328 65-172 (657)
452 PF07995 GSDH: Glucose / Sorbo 88.4 3.8 8.3E-05 38.4 9.6 107 264-371 3-134 (331)
453 KOG2280 Vacuolar assembly/sort 88.3 23 0.0005 36.3 14.8 151 109-259 82-255 (829)
454 PRK13684 Ycf48-like protein; P 88.3 23 0.00049 33.3 19.9 152 262-430 172-329 (334)
455 COG3204 Uncharacterized protei 88.2 20 0.00042 32.4 16.6 162 260-433 83-264 (316)
456 PF14870 PSII_BNR: Photosynthe 87.8 22 0.00049 32.7 30.8 152 260-429 142-301 (302)
457 KOG1900 Nuclear pore complex, 87.7 9.5 0.00021 41.4 12.5 79 260-340 176-273 (1311)
458 TIGR03548 mutarot_permut cycli 87.5 24 0.00053 32.9 21.3 23 319-341 170-196 (323)
459 PF08801 Nucleoporin_N: Nup133 87.3 14 0.00031 36.0 13.2 32 395-434 190-221 (422)
460 TIGR02276 beta_rpt_yvtn 40-res 87.1 3.9 8.5E-05 24.4 6.0 40 230-270 1-41 (42)
461 PF14781 BBS2_N: Ciliary BBSom 87.0 13 0.00028 29.2 12.3 107 226-341 4-127 (136)
462 KOG1900 Nuclear pore complex, 86.7 7.3 0.00016 42.2 11.0 166 239-433 96-273 (1311)
463 PRK14131 N-acetylneuraminic ac 86.6 31 0.00066 33.1 20.5 16 356-371 338-353 (376)
464 PF11715 Nup160: Nucleoporin N 86.5 4.7 0.0001 41.0 9.6 37 222-258 216-256 (547)
465 PF07250 Glyoxal_oxid_N: Glyox 86.4 23 0.0005 31.4 13.2 138 244-383 48-200 (243)
466 KOG2247 WD40 repeat-containing 86.1 0.1 2.3E-06 49.4 -2.2 141 223-372 37-180 (615)
467 PF05096 Glu_cyclase_2: Glutam 85.8 25 0.00055 31.4 15.5 114 263-384 45-161 (264)
468 TIGR03548 mutarot_permut cycli 85.7 31 0.00066 32.2 19.5 67 320-386 123-200 (323)
469 PF14727 PHTB1_N: PTHB1 N-term 85.4 37 0.00081 32.9 27.1 146 158-338 37-203 (418)
470 PF14781 BBS2_N: Ciliary BBSom 84.8 17 0.00037 28.6 12.7 107 275-383 12-128 (136)
471 COG5167 VID27 Protein involved 84.7 16 0.00034 35.6 11.2 139 275-432 482-632 (776)
472 TIGR03606 non_repeat_PQQ dehyd 83.9 31 0.00068 33.8 13.3 110 262-371 29-166 (454)
473 PF02333 Phytase: Phytase; In 83.4 42 0.00092 31.9 21.9 139 242-382 127-292 (381)
474 PF10647 Gmad1: Lipoprotein Lp 83.0 34 0.00074 30.6 22.5 111 222-332 67-188 (253)
475 PRK13613 lipoprotein LpqB; Pro 82.6 46 0.001 34.1 14.4 148 311-471 364-522 (599)
476 KOG1896 mRNA cleavage and poly 81.8 86 0.0019 34.3 26.4 151 275-435 1048-1216(1366)
477 PF12657 TFIIIC_delta: Transcr 81.6 14 0.00031 30.8 9.0 31 310-340 86-122 (173)
478 PF11725 AvrE: Pathogenicity f 81.3 1.1E+02 0.0023 35.1 17.6 293 116-429 445-769 (1774)
479 PF11715 Nup160: Nucleoporin N 80.3 11 0.00024 38.3 9.5 69 360-436 156-252 (547)
480 PF08801 Nucleoporin_N: Nup133 80.2 20 0.00042 35.1 10.8 31 310-340 190-220 (422)
481 TIGR03606 non_repeat_PQQ dehyd 79.4 67 0.0014 31.6 14.6 55 219-273 28-89 (454)
482 TIGR03547 muta_rot_YjhT mutatr 79.3 57 0.0012 30.7 20.9 29 357-385 253-303 (346)
483 PF12341 DUF3639: Protein of u 79.3 6 0.00013 21.3 3.8 24 112-135 3-26 (27)
484 PLN02193 nitrile-specifier pro 79.1 71 0.0015 31.7 19.7 68 320-387 278-358 (470)
485 PLN00033 photosystem II stabil 78.6 66 0.0014 31.1 26.6 150 223-377 241-396 (398)
486 PLN02153 epithiospecifier prot 78.3 61 0.0013 30.5 21.6 68 320-387 137-232 (341)
487 PF12341 DUF3639: Protein of u 76.4 8.8 0.00019 20.7 3.9 26 149-174 2-27 (27)
488 smart00564 PQQ beta-propeller 74.9 7.1 0.00015 21.7 3.8 26 233-258 7-32 (33)
489 PRK13615 lipoprotein LpqB; Pro 74.8 66 0.0014 32.6 12.6 148 312-472 336-486 (557)
490 KOG4460 Nuclear pore complex, 74.3 89 0.0019 30.9 12.5 96 311-435 105-201 (741)
491 TIGR03547 muta_rot_YjhT mutatr 74.0 80 0.0017 29.7 20.0 12 242-253 168-179 (346)
492 KOG3522 Predicted guanine nucl 74.0 24 0.00051 36.7 9.2 140 122-291 549-697 (925)
493 PLN00033 photosystem II stabil 74.0 88 0.0019 30.2 30.8 147 266-429 242-396 (398)
494 COG3823 Glutamine cyclotransfe 73.7 58 0.0012 28.0 14.2 174 231-420 55-247 (262)
495 PF10584 Proteasome_A_N: Prote 73.4 1.3 2.8E-05 22.8 0.2 10 462-471 7-16 (23)
496 KOG3522 Predicted guanine nucl 73.4 40 0.00086 35.1 10.6 219 233-466 548-782 (925)
497 PF07676 PD40: WD40-like Beta 72.7 16 0.00036 21.3 5.3 33 390-429 4-38 (39)
498 PRK10115 protease 2; Provision 72.6 1.3E+02 0.0028 31.6 27.1 69 224-292 175-256 (686)
499 PRK13614 lipoprotein LpqB; Pro 72.5 88 0.0019 31.8 12.9 148 311-473 344-503 (573)
500 TIGR03032 conserved hypothetic 72.4 81 0.0017 29.1 24.9 86 320-407 212-317 (335)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-50 Score=350.41 Aligned_cols=316 Identities=25% Similarity=0.398 Sum_probs=281.7
Q ss_pred ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728 100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW 173 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw 173 (474)
..+-.++.+|.++|.|++|+ |..|++|+.|.++|+|| ++.+..+.++|...|.|++|+ +..|++|+.||+|++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 35556889999999998877 78999999999999999 556788899999999999998 6799999999999999
Q ss_pred ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-----CCCEEEEEECCCcEEEEE
Q 047728 174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-----DQNLLYSASWDKTFKVWR 248 (474)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~s~dg~i~iwd 248 (474)
|..++++.. ..+.+|...|++++|.| ..++|++++.||.|+|||
T Consensus 185 dpktg~~~g-------------------------------~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd 233 (480)
T KOG0271|consen 185 DPKTGQQIG-------------------------------RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD 233 (480)
T ss_pred cCCCCCccc-------------------------------ccccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence 999887642 24567999999999987 567999999999999999
Q ss_pred cCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEc----------
Q 047728 249 TSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAIS---------- 318 (474)
Q Consensus 249 ~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~---------- 318 (474)
+..+.++..+.+|..+|+|+.|.-+|++++|+.|++|++|+...+. +...+.+|...|+.++++
T Consensus 234 ~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~------~~r~lkGHahwvN~lalsTdy~LRtgaf 307 (480)
T KOG0271|consen 234 TKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGK------LCRELKGHAHWVNHLALSTDYVLRTGAF 307 (480)
T ss_pred ccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchh------HHHhhcccchheeeeeccchhhhhcccc
Confidence 9999999999999999999999989999999999999999987543 467888999999999877
Q ss_pred -CCC-------------------------CEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeC
Q 047728 319 -PDA-------------------------AIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSA 370 (474)
Q Consensus 319 -~~~-------------------------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~ 370 (474)
|.+ ..|++|+.|.++.+|+............+|...| +.|+||++++++++-
T Consensus 308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF 387 (480)
T KOG0271|consen 308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF 387 (480)
T ss_pred ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec
Confidence 222 3599999999999999887776667778888766 667889999999999
Q ss_pred CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCC
Q 047728 371 DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH 450 (474)
Q Consensus 371 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 450 (474)
|..|++||-++++ .+..+.+|-++|..++|+.|.+ +|++|+.|.++++|++++. +....+.||
T Consensus 388 DkSVkLW~g~tGk--~lasfRGHv~~VYqvawsaDsR--------LlVS~SkDsTLKvw~V~tk-------Kl~~DLpGh 450 (480)
T KOG0271|consen 388 DKSVKLWDGRTGK--FLASFRGHVAAVYQVAWSADSR--------LLVSGSKDSTLKVWDVRTK-------KLKQDLPGH 450 (480)
T ss_pred ccceeeeeCCCcc--hhhhhhhccceeEEEEeccCcc--------EEEEcCCCceEEEEEeeee-------eecccCCCC
Confidence 9999999999999 5789999999999999999999 9999999999999999997 667789999
Q ss_pred CCCCCccccCCCCCcCCceeecc
Q 047728 451 GVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 451 ~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
...|.++ .|||||+.++++
T Consensus 451 ~DEVf~v----DwspDG~rV~sg 469 (480)
T KOG0271|consen 451 ADEVFAV----DWSPDGQRVASG 469 (480)
T ss_pred CceEEEE----EecCCCceeecC
Confidence 9999888 889999998875
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-44 Score=311.29 Aligned_cols=314 Identities=22% Similarity=0.355 Sum_probs=267.1
Q ss_pred CCCCCCCCCCCCCCcCccCCCCCCCC-CCCCCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeC--C-ccc
Q 047728 68 HNDSSSPFSKSPWSTHHVSVPTPSNN-DDGFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKN--Q-REF 141 (474)
Q Consensus 68 ~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~--~-~~~ 141 (474)
|.+.+-+..++|.+....+....... .+.........+.++|+.-|.|++++ |+.||+|+.||+|++||. + +..
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g 193 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG 193 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc
Confidence 44555566778866666555433322 34555667788999999999998865 899999999999999993 3 446
Q ss_pred cccccCccCEEEEEec-------CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccc
Q 047728 142 SGFKSNSGLVKAIVIS-------NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNG 214 (474)
Q Consensus 142 ~~~~~h~~~V~~i~~~-------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (474)
..+.+|...|++++|. ..+|++++.||.|+|||+..+.++.
T Consensus 194 ~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~-------------------------------- 241 (480)
T KOG0271|consen 194 RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR-------------------------------- 241 (480)
T ss_pred ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE--------------------------------
Confidence 7799999999999996 3589999999999999998876653
Q ss_pred eeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecC-----------CC---------
Q 047728 215 LWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF-----------DG--------- 274 (474)
Q Consensus 215 ~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-----------~~--------- 274 (474)
.+.+|+.+|+|+.|--+ .+|++|+.|++|++|+...|.+.+.+++|...|+.++.+. .+
T Consensus 242 ~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~ 320 (480)
T KOG0271|consen 242 TLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE 320 (480)
T ss_pred EeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence 34569999999999755 4999999999999999999999999999999999998871 11
Q ss_pred -----------------eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEee
Q 047728 275 -----------------LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337 (474)
Q Consensus 275 -----------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d 337 (474)
.+++|+.|.++.+|+.....+ +.....+|..-|..+.|+||++++++++-|..|++||
T Consensus 321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk-----pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK-----PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD 395 (480)
T ss_pred HHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc-----chhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence 499999999999998765443 4667789999999999999999999999999999999
Q ss_pred cCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceE
Q 047728 338 RELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRW 415 (474)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 415 (474)
.++++.+ ..+++|-..|..+.+ |.++|++|+.|.++++||+++.+ ....+.+|...|.++.|+|||.
T Consensus 396 g~tGk~l-asfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK--l~~DLpGh~DEVf~vDwspDG~-------- 464 (480)
T KOG0271|consen 396 GRTGKFL-ASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK--LKQDLPGHADEVFAVDWSPDGQ-------- 464 (480)
T ss_pred CCCcchh-hhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee--ecccCCCCCceEEEEEecCCCc--------
Confidence 9999765 678899988866554 67899999999999999999887 5678999999999999999999
Q ss_pred EEEEecCCCcEEEEE
Q 047728 416 ILYSGSLDKSVKMWR 430 (474)
Q Consensus 416 ~l~s~s~Dg~i~vw~ 430 (474)
.+++|+.|..+++|.
T Consensus 465 rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 465 RVASGGKDKVLRLWR 479 (480)
T ss_pred eeecCCCceEEEeec
Confidence 899999999999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-44 Score=315.98 Aligned_cols=281 Identities=24% Similarity=0.373 Sum_probs=251.4
Q ss_pred eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecC----CEEEEEeCCCeEEE
Q 047728 101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISN----EKIFSGHQDGKIRV 172 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~----~~l~s~~~dg~i~v 172 (474)
.+..+-.+-+.+|..+.|+ ++.|+||+.+|.++||+.. ..+..|.+|...|.++.|++ ..++||+.||++++
T Consensus 166 ~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 166 ELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKL 245 (459)
T ss_pred hhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceee
Confidence 3444445667777776665 8899999999999999844 66888999999999999983 38999999999999
Q ss_pred EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc
Q 047728 173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY 252 (474)
Q Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 252 (474)
|++++...+ ..+.+|...|..++|+|+|++|++++.|.+-++||++++
T Consensus 246 w~~~~e~~l--------------------------------~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk 293 (459)
T KOG0272|consen 246 WKLSQETPL--------------------------------QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK 293 (459)
T ss_pred eccCCCcch--------------------------------hhhhcchhhheeeeecCCCceeeecccccchhhcccccc
Confidence 999986543 244569999999999999999999999999999999999
Q ss_pred ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC
Q 047728 253 KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG 331 (474)
Q Consensus 253 ~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 331 (474)
..+....+|...|.+++|.+|| ++++|+.|..-+|||++++.. ...+.+|..+|..++|+|+|..|++|+.|+
T Consensus 294 ~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~------im~L~gH~k~I~~V~fsPNGy~lATgs~Dn 367 (459)
T KOG0272|consen 294 SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC------IMFLAGHIKEILSVAFSPNGYHLATGSSDN 367 (459)
T ss_pred hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcE------EEEecccccceeeEeECCCceEEeecCCCC
Confidence 9999999999999999999999 999999999999999998774 778889999999999999999999999999
Q ss_pred cEEEeecCcccccceeeeecceee--EEEEe-cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcc
Q 047728 332 LVNFWERELNLSHGGVLRGHKLAI--LCLVT-AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDES 408 (474)
Q Consensus 332 ~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 408 (474)
+++|||++.... ...+.+|..-| ++++| .|.+|++++.|++++||...+.. ++..+.||.+.|.++.+++++.
T Consensus 368 t~kVWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~--~~ksLaGHe~kV~s~Dis~d~~- 443 (459)
T KOG0272|consen 368 TCKVWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS--PLKSLAGHEGKVISLDISPDSQ- 443 (459)
T ss_pred cEEEeeeccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc--cchhhcCCccceEEEEeccCCc-
Confidence 999999998766 46777888777 55666 58999999999999999999888 6889999999999999999999
Q ss_pred ccccceEEEEEecCCCcEEEEE
Q 047728 409 LSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 409 ~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
+++|++.|.+|++|.
T Consensus 444 -------~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 444 -------AIATSSFDRTIKLWR 458 (459)
T ss_pred -------eEEEeccCceeeecc
Confidence 999999999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.1e-42 Score=301.69 Aligned_cols=270 Identities=22% Similarity=0.313 Sum_probs=243.3
Q ss_pred cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728 146 SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI 223 (474)
Q Consensus 146 ~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 223 (474)
+.+.+|..+.|+ ++.|+||+.+|.++||+..+.... .+|.+|...|
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~--------------------------------~~l~gH~~~v 220 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL--------------------------------QTLRGHTSRV 220 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee--------------------------------EEEeccccce
Confidence 457789889887 779999999999999999887443 3567899999
Q ss_pred eEEEecCC--CCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeee
Q 047728 224 SSLSMSED--QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHF 300 (474)
Q Consensus 224 ~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~ 300 (474)
.++.|+|. +..|++|+.||++++|++.+..++..+.+|...|..++|+|+| +|++++.|.+-++||+++...
T Consensus 221 ~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E----- 295 (459)
T KOG0272|consen 221 GAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE----- 295 (459)
T ss_pred eeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-----
Confidence 99999995 6799999999999999999999999999999999999999999 999999999999999997654
Q ss_pred eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--EEecCCEEEEEeCCCcEEEEE
Q 047728 301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAGNLVFSGSADMSICIWR 378 (474)
Q Consensus 301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sgs~dg~i~iwd 378 (474)
.....+|...|.+++|++||.++++|+.|..-+|||++++.++ .++.+|...|.. |+|+|..|++|+.|++++|||
T Consensus 296 -lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i-m~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 296 -LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCI-MFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWD 373 (459)
T ss_pred -hHhhcccccccceeEecCCCceeeccCccchhheeecccCcEE-EEecccccceeeEeECCCceEEeecCCCCcEEEee
Confidence 5667899999999999999999999999999999999999877 577789988855 566899999999999999999
Q ss_pred CCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccc
Q 047728 379 RKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLP 458 (474)
Q Consensus 379 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 458 (474)
++... .+.++.+|.+-|+.|.|+|+... +|+|++.|++++||.-.+. .+.+.+.||...|-++
T Consensus 374 LR~r~--~ly~ipAH~nlVS~Vk~~p~~g~-------fL~TasyD~t~kiWs~~~~-------~~~ksLaGHe~kV~s~- 436 (459)
T KOG0272|consen 374 LRMRS--ELYTIPAHSNLVSQVKYSPQEGY-------FLVTASYDNTVKIWSTRTW-------SPLKSLAGHEGKVISL- 436 (459)
T ss_pred ecccc--cceecccccchhhheEecccCCe-------EEEEcccCcceeeecCCCc-------ccchhhcCCccceEEE-
Confidence 99877 47899999999999999994332 9999999999999999888 6778899999999999
Q ss_pred cCCCCCcCCceeeccC
Q 047728 459 YAPSFSSQGRICQKRS 474 (474)
Q Consensus 459 ~~p~~s~Dg~~l~~~s 474 (474)
.+|+||+.++++|
T Consensus 437 ---Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 437 ---DISPDSQAIATSS 449 (459)
T ss_pred ---EeccCCceEEEec
Confidence 8899999998865
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.5e-40 Score=274.58 Aligned_cols=287 Identities=21% Similarity=0.349 Sum_probs=247.3
Q ss_pred eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728 101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWK 174 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd 174 (474)
...+.|++|.+.|+++.+. .++|++++.||.+.||| +......+.-....|..++|+ ++.++.|+.|+...||+
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 3447899999999999987 77999999999999999 445666677778889999997 78999999999999999
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC 254 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 254 (474)
+.+.+......+ ...+.+|++-+.|+.|-+| ..|++++.|.++.+||+++++.
T Consensus 126 ls~~d~~g~~~v--------------------------~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~ 178 (343)
T KOG0286|consen 126 LSTRDAEGNVRV--------------------------SRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ 178 (343)
T ss_pred ccccccccccee--------------------------eeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE
Confidence 986532211111 1245679999999999985 5788999999999999999999
Q ss_pred eeeeeecCcceeEEEecC-CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728 255 LESVIAHDDAVNSIVAGF-DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL 332 (474)
Q Consensus 255 ~~~~~~~~~~v~~v~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 332 (474)
+..+.+|.+.|.++.+.| ++ .+++|+.|+..++||++.+. ..+.+.+|+..|.+++|.|+|.-+++|+.|++
T Consensus 179 ~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~------c~qtF~ghesDINsv~ffP~G~afatGSDD~t 252 (343)
T KOG0286|consen 179 TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ------CVQTFEGHESDINSVRFFPSGDAFATGSDDAT 252 (343)
T ss_pred EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc------eeEeecccccccceEEEccCCCeeeecCCCce
Confidence 999999999999999999 55 99999999999999999765 58899999999999999999999999999999
Q ss_pred EEEeecCcccccceeeee---cceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccc
Q 047728 333 VNFWERELNLSHGGVLRG---HKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL 409 (474)
Q Consensus 333 i~v~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 409 (474)
.++||++....+...... .....++|+..|++|++|..|..+.+||.-.++ .+..+.+|.+.|.|+..+|||.
T Consensus 253 cRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e--~vg~L~GHeNRvScl~~s~DG~-- 328 (343)
T KOG0286|consen 253 CRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE--RVGVLAGHENRVSCLGVSPDGM-- 328 (343)
T ss_pred eEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc--eEEEeeccCCeeEEEEECCCCc--
Confidence 999999987665433221 123346677789999999999999999998887 4678899999999999999999
Q ss_pred cccceEEEEEecCCCcEEEEE
Q 047728 410 SREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 410 ~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
.|+||+.|.++|||.
T Consensus 329 ------av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 329 ------AVATGSWDSTLRIWA 343 (343)
T ss_pred ------EEEecchhHheeecC
Confidence 899999999999994
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2e-38 Score=264.45 Aligned_cols=286 Identities=24% Similarity=0.396 Sum_probs=233.4
Q ss_pred ceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCC-------ccccccccCccCEEEEEec--CCEEEEEeCC
Q 047728 100 NVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQ-------REFSGFKSNSGLVKAIVIS--NEKIFSGHQD 167 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~-------~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d 167 (474)
..+..+|.+|++.|..++-. .+.|++++.|.++.+|++. ..++.+++|...|..+..+ +++.++++.|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 46778999999999998865 6799999999999999743 4578899999999999887 7899999999
Q ss_pred CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEE
Q 047728 168 GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW 247 (474)
Q Consensus 168 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw 247 (474)
+++++||+.+++.. ..|.+|...|.+++|++|...|++|+.|.+|++|
T Consensus 85 ~~lrlWDl~~g~~t--------------------------------~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 85 GTLRLWDLATGEST--------------------------------RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred ceEEEEEecCCcEE--------------------------------EEEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence 99999999998543 2456799999999999999999999999999999
Q ss_pred EcCCcceeeeeeec--CcceeEEEecCCC---eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC
Q 047728 248 RTSDYKCLESVIAH--DDAVNSIVAGFDG---LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA 322 (474)
Q Consensus 248 d~~~~~~~~~~~~~--~~~v~~v~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 322 (474)
++.. .+..++..+ .+.|.|+.|+|+. .|++++.|++|++||++..+ ....+.+|...++.++++|||.
T Consensus 133 nt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~------l~~~~~gh~~~v~t~~vSpDGs 205 (315)
T KOG0279|consen 133 NTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ------LRTTFIGHSGYVNTVTVSPDGS 205 (315)
T ss_pred eecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc------hhhccccccccEEEEEECCCCC
Confidence 9865 444555443 7899999999984 89999999999999998665 3677889999999999999999
Q ss_pred EEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeec-------CCcc
Q 047728 323 IVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLT-------GHSG 395 (474)
Q Consensus 323 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-------~h~~ 395 (474)
..++|+.||.+.+||++.++.+...........+||+|+.-.|+.+ .+..|+|||++++..+....+. ....
T Consensus 206 lcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~ 284 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDP 284 (315)
T ss_pred EEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCc
Confidence 9999999999999999988775443333334446666655555544 4556999999987632111111 1123
Q ss_pred ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 396 PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 396 ~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
....++|++||. .|++|-.|+.|++|.+..
T Consensus 285 ~clslaws~dG~--------tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 285 ICLSLAWSADGQ--------TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EEEEEEEcCCCc--------EEEeeecCCcEEEEEeec
Confidence 467789999999 899999999999999853
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.4e-38 Score=259.65 Aligned_cols=284 Identities=19% Similarity=0.346 Sum_probs=233.8
Q ss_pred CEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceee
Q 047728 121 DLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFI 196 (474)
Q Consensus 121 ~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 196 (474)
-+|++++.|.+||+|. .+.+..+++.....|+.+... +..|++++.. .||+||+.+.+....
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv------------- 76 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPV------------- 76 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCce-------------
Confidence 4899999999999998 567788888888899999998 4466666655 699999999875322
Q ss_pred eeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-e
Q 047728 197 KCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-L 275 (474)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~ 275 (474)
..+.+|+..|+++.|..+|+.+++|++||+++|||++...+.+.+ .|..+|+++..+|+. .
T Consensus 77 -----------------~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQte 138 (311)
T KOG0315|consen 77 -----------------ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTE 138 (311)
T ss_pred -----------------eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcce
Confidence 345669999999999999999999999999999999997766655 467999999999998 9
Q ss_pred EEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc-----ccceeeee
Q 047728 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL-----SHGGVLRG 350 (474)
Q Consensus 276 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~ 350 (474)
|++|..+|.|++||+..... ...........|.++.+.|+|.+++.+...|..++|++-... .+...++.
T Consensus 139 Lis~dqsg~irvWDl~~~~c-----~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 139 LISGDQSGNIRVWDLGENSC-----THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred EEeecCCCcEEEEEccCCcc-----ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec
Confidence 99999999999999986533 123334455789999999999999999999999999986542 23344566
Q ss_pred cceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEE
Q 047728 351 HKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM 428 (474)
Q Consensus 351 ~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v 428 (474)
|...++ -++|++++|++++.|.+++||+.++. ......+.+|...+.+++|+.|++ ||+||+.|+.+++
T Consensus 214 h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~--------YlvTassd~~~rl 284 (311)
T KOG0315|consen 214 HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGE--------YLVTASSDHTARL 284 (311)
T ss_pred ccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCcc--------EEEecCCCCceee
Confidence 776663 46889999999999999999999887 445678899999999999999999 9999999999999
Q ss_pred EEccCCCCCCCCCcccccccCCCCCCCcc
Q 047728 429 WRVSEQAPPLVSTTQQHPLEGHGVAPNSL 457 (474)
Q Consensus 429 w~~~~~~~~~~~~~~~~~~~~~~~~v~~l 457 (474)
|+++.++. .....+|.....++
T Consensus 285 W~~~~~k~-------v~qy~gh~K~~vc~ 306 (311)
T KOG0315|consen 285 WDLSAGKE-------VRQYQGHHKAAVCV 306 (311)
T ss_pred cccccCce-------eeecCCcccccEEE
Confidence 99999843 33445555444443
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.8e-38 Score=261.89 Aligned_cols=276 Identities=19% Similarity=0.296 Sum_probs=244.5
Q ss_pred ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728 141 FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218 (474)
Q Consensus 141 ~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
...+++|.+.|.++.|. .++|++++.||.+.|||.-+.........
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-------------------------------- 95 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-------------------------------- 95 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--------------------------------
Confidence 36789999999999998 67999999999999999887765432221
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc------ceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEccc
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY------KCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRREL 292 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~ 292 (474)
....|..++|+|.++++++|+.|+...||++.+. +..+.+.+|.+.+.|+.|.+|+.|++++.|.+..+||+++
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIET 175 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEccc
Confidence 5568999999999999999999999999999865 3456788999999999999999999999999999999997
Q ss_pred CCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEe
Q 047728 293 QGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGS 369 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs 369 (474)
++. ...+.+|.+.|.+++++| +++.+++|+.|+..++||++.+... +.+.+|...| ++|.|+|.-+++|+
T Consensus 176 g~~------~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~-qtF~ghesDINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 176 GQQ------TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCV-QTFEGHESDINSVRFFPSGDAFATGS 248 (343)
T ss_pred ceE------EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCccee-EeecccccccceEEEccCCCeeeecC
Confidence 764 678889999999999999 9999999999999999999998654 6788898776 66678999999999
Q ss_pred CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccC
Q 047728 370 ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEG 449 (474)
Q Consensus 370 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~ 449 (474)
+|++.++||++..+.+.+..-..-..+|++++|+..|+ +|++|..|.++.+||.-.+ +....+.+
T Consensus 249 DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR--------lLfagy~d~~c~vWDtlk~-------e~vg~L~G 313 (343)
T KOG0286|consen 249 DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR--------LLFAGYDDFTCNVWDTLKG-------ERVGVLAG 313 (343)
T ss_pred CCceeEEEeecCCcEEeeeccCcccCCceeEEEccccc--------EEEeeecCCceeEeecccc-------ceEEEeec
Confidence 99999999999988766666555667899999999999 9999999999999999887 56677889
Q ss_pred CCCCCCccccCCCCCcCCceeeccC
Q 047728 450 HGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 450 ~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
|.++|++| ..+|||.-+.++|
T Consensus 314 HeNRvScl----~~s~DG~av~TgS 334 (343)
T KOG0286|consen 314 HENRVSCL----GVSPDGMAVATGS 334 (343)
T ss_pred cCCeeEEE----EECCCCcEEEecc
Confidence 99999999 8899999999886
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-37 Score=257.33 Aligned_cols=286 Identities=22% Similarity=0.309 Sum_probs=223.2
Q ss_pred ccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 141 FSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 141 ~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
...+++|.+.|+.++.. .+.+++++.|.++.+|++...+...- .....+.
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G---------------------------~~~r~~~ 60 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG---------------------------VPVRRLT 60 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC---------------------------ceeeeee
Confidence 34678999999999986 67999999999999999987633211 1113467
Q ss_pred eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
+|...|..+..++++++.+++++|+++++||+.+++..+.|.+|...|.+++|++|+ .+++|+.|.+|++|+.....+
T Consensus 61 GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck- 139 (315)
T KOG0279|consen 61 GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK- 139 (315)
T ss_pred ccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-
Confidence 799999999999999999999999999999999999999999999999999999999 999999999999999864322
Q ss_pred eeeeeeeeeecccccEEEEEEcCC--CCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCC
Q 047728 297 TKHFFSQTLLKQECAVTALAISPD--AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADM 372 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg 372 (474)
.......+.+.|.|+.|+|+ ..+|+.++.|++|++||+++.+.. ..+.+|...+ +.++|||.++++|+.||
T Consensus 140 ----~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~-~~~~gh~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 140 ----YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR-TTFIGHSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred ----EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh-hccccccccEEEEEECCCCCEEecCCCCc
Confidence 11222223789999999997 789999999999999999976544 5556777655 67789999999999999
Q ss_pred cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCC
Q 047728 373 SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGV 452 (474)
Q Consensus 373 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 452 (474)
.+.+||++.++ ++..+ +|...|.+++|+|+.- .+++..+..|+|||+..+...............-..
T Consensus 215 ~~~LwdL~~~k--~lysl-~a~~~v~sl~fspnry---------wL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~ 282 (315)
T KOG0279|consen 215 EAMLWDLNEGK--NLYSL-EAFDIVNSLCFSPNRY---------WLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAG 282 (315)
T ss_pred eEEEEEccCCc--eeEec-cCCCeEeeEEecCCce---------eEeeccCCceEEEeccchhhhhhccccccccccccC
Confidence 99999999888 34444 5888999999999974 444445667999999887543321111110000111
Q ss_pred CCCccccCCCCCcCCceeecc
Q 047728 453 APNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 453 ~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
.+. +..-+||+||+.|..+
T Consensus 283 ~~~--clslaws~dG~tLf~g 301 (315)
T KOG0279|consen 283 DPI--CLSLAWSADGQTLFAG 301 (315)
T ss_pred CcE--EEEEEEcCCCcEEEee
Confidence 222 2334899999988653
No 10
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2e-36 Score=251.53 Aligned_cols=288 Identities=21% Similarity=0.307 Sum_probs=239.5
Q ss_pred ceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCc-----cccc-cccCccCEEEEEec--CCEEEEEeCCC
Q 047728 100 NVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQR-----EFSG-FKSNSGLVKAIVIS--NEKIFSGHQDG 168 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~-----~~~~-~~~h~~~V~~i~~~--~~~l~s~~~dg 168 (474)
..+++.+.+|++.|+.++++ |.+||+|+.|+.||||+... .... -.+|...|..++|+ +++|++|+.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 35678899999999999998 34899999999999999763 1111 24799999999996 88999999999
Q ss_pred eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEE
Q 047728 169 KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWR 248 (474)
Q Consensus 169 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd 248 (474)
++.||.-..++... ..++.||..+|.|++|+++|.+||+++.|+.|.||.
T Consensus 84 t~~Iw~k~~~efec------------------------------v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe 133 (312)
T KOG0645|consen 84 TVVIWKKEDGEFEC------------------------------VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWE 133 (312)
T ss_pred eEEEeecCCCceeE------------------------------EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEE
Confidence 99999877654322 135677999999999999999999999999999999
Q ss_pred cCC---cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEE
Q 047728 249 TSD---YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIV 324 (474)
Q Consensus 249 ~~~---~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 324 (474)
+.. .+++..++.|...|..+.|+|.. +|++++.|.+|++|+-.. .....+.+.+.+|...|.+++|++.|..|
T Consensus 134 ~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~---dddW~c~~tl~g~~~TVW~~~F~~~G~rl 210 (312)
T KOG0645|consen 134 IDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED---DDDWECVQTLDGHENTVWSLAFDNIGSRL 210 (312)
T ss_pred ecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC---CCCeeEEEEecCccceEEEEEecCCCceE
Confidence 863 46788899999999999999987 999999999999998763 23455678899999999999999999999
Q ss_pred EEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCce-----EEEEeecCCccceEE
Q 047728 325 YCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEH-----ICLSMLTGHSGPVKC 399 (474)
Q Consensus 325 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~-----~~~~~~~~h~~~v~~ 399 (474)
++++.|++++||-.... +..-|+..+..+.++...|++++.|+.|++|.....-. .....-..|...|++
T Consensus 211 ~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNs 285 (312)
T KOG0645|consen 211 VSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNS 285 (312)
T ss_pred EEecCCcceEeeeeccC-----cchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccce
Confidence 99999999999986532 33456777888888888999999999999997764310 012234578899999
Q ss_pred EEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 400 LAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 400 l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
++|.|.... .|++|+.||.|++|.+.
T Consensus 286 V~w~p~~~~-------~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 286 VQWNPKVSN-------RLASGGDDGIVNFWELE 311 (312)
T ss_pred EEEcCCCCC-------ceeecCCCceEEEEEec
Confidence 999995333 79999999999999975
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.2e-37 Score=287.08 Aligned_cols=351 Identities=21% Similarity=0.328 Sum_probs=273.7
Q ss_pred CCCCCCcceeeeeeeeecCcEEEEEEcCC----EEEEeeCCCcEEEEeCC---ccccccccCccCEEEEEec--CCEEEE
Q 047728 93 NDDGFSPNVLIGSLVREEGHIYSLAAAGD----LLYTGSDSKNIRVWKNQ---REFSGFKSNSGLVKAIVIS--NEKIFS 163 (474)
Q Consensus 93 ~~~~~~~~~~~~~l~~h~~~i~~~~~~~~----~l~tgs~dg~v~vwd~~---~~~~~~~~h~~~V~~i~~~--~~~l~s 163 (474)
..+++.......+|.||.|.|.++.|.+. +|++|..|++|++||.. .++..+..|...|+++.+. +..+++
T Consensus 130 ~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls 209 (775)
T KOG0319|consen 130 KVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLS 209 (775)
T ss_pred EEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEE
Confidence 34577888999999999999999999843 68999999999999965 3467788999999999997 567888
Q ss_pred EeCCCeEEEEecCCCCcceeee----------------------------------------------ecccCccceeee
Q 047728 164 GHQDGKIRVWKVSSKDASIHKR----------------------------------------------VGTLPTFKDFIK 197 (474)
Q Consensus 164 ~~~dg~i~vwd~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~ 197 (474)
++.|..+.|||+.+.+...... ....+.......
T Consensus 210 ~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~ 289 (775)
T KOG0319|consen 210 VGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLA 289 (775)
T ss_pred eccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhccee
Confidence 8888888888875433221100 000000000000
Q ss_pred ee----------------------------------------cC-CCCeE------------EEeeeccceeeeccCCee
Q 047728 198 CS----------------------------------------MK-PSNYI------------EVRRHRNGLWIKHFDAIS 224 (474)
Q Consensus 198 ~~----------------------------------------~~-~~~~~------------~~~~~~~~~~~~h~~~V~ 224 (474)
.. +. ....+ ........++.+|++.|.
T Consensus 290 ~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vl 369 (775)
T KOG0319|consen 290 IESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVL 369 (775)
T ss_pred ccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhhee
Confidence 00 00 00000 111122245679999999
Q ss_pred EEEecCCCCEEEEEECCCcEEEEEcCCc----ceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCcee
Q 047728 225 SLSMSEDQNLLYSASWDKTFKVWRTSDY----KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTK 298 (474)
Q Consensus 225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~ 298 (474)
++....+|.+|++|+.|+++++|.++++ .++....+|...|.+++++..+ .|++++.|+++++|++........
T Consensus 370 SL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 370 SLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF 449 (775)
T ss_pred eeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence 9996677889999999999999988443 3455668899999999997776 899999999999999986222111
Q ss_pred ---eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCc
Q 047728 299 ---HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMS 373 (474)
Q Consensus 299 ---~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~ 373 (474)
.........|...|++++++|+.+++++|+.|.+.++|+++ ...+...+.+|...+.|+++ ..+.++++|.|++
T Consensus 450 ~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T 528 (775)
T KOG0319|consen 450 PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT 528 (775)
T ss_pred cceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-CceEEEEeeCCccceEEEEeccccceeEeccCCce
Confidence 11122446789999999999999999999999999999999 44566889999999877776 4679999999999
Q ss_pred EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCC
Q 047728 374 ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVA 453 (474)
Q Consensus 374 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 453 (474)
|+||.+.+.. |+.++.||...|..+.|..++. .|++++.||.|++|++.+. .+...+..|..+
T Consensus 529 vKIW~is~fS--ClkT~eGH~~aVlra~F~~~~~--------qliS~~adGliKlWnikt~-------eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 529 VKIWSISTFS--CLKTFEGHTSAVLRASFIRNGK--------QLISAGADGLIKLWNIKTN-------ECEMTLDAHNDR 591 (775)
T ss_pred EEEEEeccce--eeeeecCccceeEeeeeeeCCc--------EEEeccCCCcEEEEeccch-------hhhhhhhhccce
Confidence 9999999888 8999999999999999999999 8999999999999999998 788899999999
Q ss_pred CCccccCC
Q 047728 454 PNSLPYAP 461 (474)
Q Consensus 454 v~~l~~~p 461 (474)
|.++.-.|
T Consensus 592 vWaL~~~~ 599 (775)
T KOG0319|consen 592 VWALSVSP 599 (775)
T ss_pred eEEEeecC
Confidence 99985444
No 12
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.2e-38 Score=271.56 Aligned_cols=274 Identities=25% Similarity=0.449 Sum_probs=242.8
Q ss_pred cCcEEEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728 110 EGHIYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVG 187 (474)
Q Consensus 110 ~~~i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 187 (474)
...|+|+.++.+.+++|..|.+|+|||.+ .....+.+|++.|.|+.+....|++|+.|.+|+|||+++++++
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l------ 270 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPL------ 270 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchh------
Confidence 45799999999999999999999999965 5677889999999999999999999999999999999999875
Q ss_pred ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc---eeeeeeecCcc
Q 047728 188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK---CLESVIAHDDA 264 (474)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~ 264 (474)
.++.+|...|..+.|+ +.++++++.|.++.+||+.... +...+.+|...
T Consensus 271 --------------------------~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 271 --------------------------NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred --------------------------hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 3566799999999997 4599999999999999997654 34567899999
Q ss_pred eeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc
Q 047728 265 VNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH 344 (474)
Q Consensus 265 v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 344 (474)
|+.+.|... ++++++.|.+|++|++.+.. +...+.+|...|.|+.+ .++++++|++|.+|++||++.+..+
T Consensus 323 VNvVdfd~k-yIVsASgDRTikvW~~st~e------fvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 323 VNVVDFDDK-YIVSASGDRTIKVWSTSTCE------FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL 393 (499)
T ss_pred eeeeccccc-eEEEecCCceEEEEecccee------eehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHH
Confidence 999999754 99999999999999987654 57888999999999887 5889999999999999999999776
Q ss_pred ceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceE-------EEEeecCCccceEEEEEeeCCccccccceEEE
Q 047728 345 GGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHI-------CLSMLTGHSGPVKCLAVEKDDESLSREKRWIL 417 (474)
Q Consensus 345 ~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l 417 (474)
..+.+|..-+.|+.++.+.+++|+.||+|++||+..+... |+..+..|.+.|..+.|..- .+
T Consensus 394 -RvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f----------qI 462 (499)
T KOG0281|consen 394 -RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF----------QI 462 (499)
T ss_pred -HHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce----------EE
Confidence 6888999999999999999999999999999999876543 66777889999999999654 68
Q ss_pred EEecCCCcEEEEEccCCCCC
Q 047728 418 YSGSLDKSVKMWRVSEQAPP 437 (474)
Q Consensus 418 ~s~s~Dg~i~vw~~~~~~~~ 437 (474)
++++.|.+|-|||+.++.+.
T Consensus 463 vsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 463 ISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EeccCCCeEEEEEcCCCCcc
Confidence 99999999999999887443
No 13
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.5e-38 Score=280.35 Aligned_cols=288 Identities=17% Similarity=0.305 Sum_probs=249.6
Q ss_pred CCCcceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEe---CCccccccccCccCEEEEEec--CCEEEEEeCC
Q 047728 96 GFSPNVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWK---NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQD 167 (474)
Q Consensus 96 ~~~~~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd---~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d 167 (474)
-+-|..++.++.+|+..|.++.+- +.+|++|+.|+.|+||+ .++.++++.+|..+|..++|+ +..+++++.|
T Consensus 200 c~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 200 CYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD 279 (503)
T ss_pred eeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence 345889999999999999998865 78999999999999998 457899999999999999998 7899999999
Q ss_pred CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC-CEEEEEECCCcEEE
Q 047728 168 GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ-NLLYSASWDKTFKV 246 (474)
Q Consensus 168 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~i 246 (474)
+.|++||++++++...+. ....+.|+.|+|++ +.+++|+.|+.|+.
T Consensus 280 ~~lKlwDtETG~~~~~f~---------------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~ 326 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFH---------------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQ 326 (503)
T ss_pred eeeeeeccccceEEEEEe---------------------------------cCCCceeeecCCCCCcEEEEecCCCcEEE
Confidence 999999999998876554 33457899999987 89999999999999
Q ss_pred EEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728 247 WRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY 325 (474)
Q Consensus 247 wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 325 (474)
||+++++.++.+..|-+.|..+.|.+++ ++++.+.|+.++||+.+..-. .............++..+|++++++
T Consensus 327 wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~-----ik~i~~~~~hsmP~~~~~P~~~~~~ 401 (503)
T KOG0282|consen 327 WDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP-----IKNIADPEMHTMPCLTLHPNGKWFA 401 (503)
T ss_pred EeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc-----chhhcchhhccCcceecCCCCCeeh
Confidence 9999999999999999999999999999 999999999999999875543 2223333445678899999999999
Q ss_pred EEcCCCcEEEeecCcccc--cceeeeeccee----eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEE
Q 047728 326 CGSSDGLVNFWERELNLS--HGGVLRGHKLA----ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKC 399 (474)
Q Consensus 326 ~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~----v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~ 399 (474)
+-+.|+.|.+|.+..... ....+.+|... -+.++|||.+|++|+.||.+.+||.++.+ .+..+.+|.+++..
T Consensus 402 aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k--l~~~lkah~~~ci~ 479 (503)
T KOG0282|consen 402 AQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK--LVSKLKAHDQPCIG 479 (503)
T ss_pred hhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh--hhhccccCCcceEE
Confidence 999999999998754432 23445677644 36788999999999999999999999887 56789999999999
Q ss_pred EEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728 400 LAVEKDDESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 400 l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
+.|+|...+ .+|||+.||.|++|+
T Consensus 480 v~wHP~e~S-------kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 480 VDWHPVEPS-------KVATCGWDGLIKIWD 503 (503)
T ss_pred EEecCCCcc-------eeEecccCceeEecC
Confidence 999998876 799999999999996
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-37 Score=265.61 Aligned_cols=283 Identities=21% Similarity=0.370 Sum_probs=249.4
Q ss_pred eeeeeeeeecCcEEEEEEcC--CEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728 101 VLIGSLVREEGHIYSLAAAG--DLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWK 174 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~~--~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd 174 (474)
.+...+.+|+.+|+.+-+.. -+++++++|++|++|| +++....+++|...|..|+|+ +.+|++++.|=.+++||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 45667788999999988774 4778888999999999 446788899999999999998 88999999999999999
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC 254 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 254 (474)
+++...-. ....+|...|.+++|-|.|.+|++++.|.+|+.|++.++-+
T Consensus 179 ~~~~~~c~-------------------------------ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c 227 (406)
T KOG0295|consen 179 FDTFFRCI-------------------------------KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC 227 (406)
T ss_pred HHHHHHHH-------------------------------HHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee
Confidence 98741110 23356999999999999999999999999999999999999
Q ss_pred eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC-------------
Q 047728 255 LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD------------- 320 (474)
Q Consensus 255 ~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~------------- 320 (474)
+.++.+|...|..+..+.|| ++++++.|.+|++|-+.+.. +...+..|+.+|.+++|-|.
T Consensus 228 v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~------~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~ 301 (406)
T KOG0295|consen 228 VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ------CKAELREHEHPVECIAWAPESSYPSISEATGST 301 (406)
T ss_pred EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccch------hhhhhhccccceEEEEecccccCcchhhccCCC
Confidence 99999999999999999999 89999999999999887654 35677889999999999873
Q ss_pred --CCEEEEEcCCCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccc
Q 047728 321 --AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGP 396 (474)
Q Consensus 321 --~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~ 396 (474)
+.++.+++.|++|++||+.++.++ ..+.+|...|. +|+|.|+||+++.+|+++++||+++.+ |+..+..|..-
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~tg~cL-~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~--cmk~~~ah~hf 378 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVSTGMCL-FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ--CMKTLEAHEHF 378 (406)
T ss_pred CCccEEEeecccceEEEEeccCCeEE-EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce--eeeccCCCcce
Confidence 258999999999999999999776 56778998885 555669999999999999999999988 88899999999
Q ss_pred eEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728 397 VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431 (474)
Q Consensus 397 v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~ 431 (474)
|+++.|+.+.. +++||+-|.++++|.-
T Consensus 379 vt~lDfh~~~p--------~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 379 VTSLDFHKTAP--------YVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEEecCCCCc--------eEEeccccceeeeeec
Confidence 99999999988 9999999999999974
No 15
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.7e-36 Score=260.95 Aligned_cols=289 Identities=21% Similarity=0.373 Sum_probs=251.5
Q ss_pred CcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeC--CccccccccCccCEEEEEec--CCEEEEEeCCCeEE
Q 047728 98 SPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIR 171 (474)
Q Consensus 98 ~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~ 171 (474)
.|-.+.+.+.+|.+-|.|++++ +.+|+||+.|++|+|||+ ++...++.+|...|..++++ -.|+++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 3457888999999999999988 779999999999999994 46777889999999999999 45999999999999
Q ss_pred EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC
Q 047728 172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD 251 (474)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 251 (474)
.||++..+.+. .+.+|-..|.|++.+|.-..|++|+.|.++++||+++
T Consensus 219 CwDLe~nkvIR--------------------------------~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt 266 (460)
T KOG0285|consen 219 CWDLEYNKVIR--------------------------------HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT 266 (460)
T ss_pred EEechhhhhHH--------------------------------HhccccceeEEEeccccceeEEecCCcceEEEeeecc
Confidence 99999887653 4567999999999999999999999999999999999
Q ss_pred cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC
Q 047728 252 YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD 330 (474)
Q Consensus 252 ~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 330 (474)
...+..+.+|..+|..+.+.|-+ .+++|+.|++|++||++.+.. ...+..|...|.+++.+|....+++++.|
T Consensus 267 r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt------~~tlt~hkksvral~lhP~e~~fASas~d 340 (460)
T KOG0285|consen 267 RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT------MITLTHHKKSVRALCLHPKENLFASASPD 340 (460)
T ss_pred cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce------eEeeecccceeeEEecCCchhhhhccCCc
Confidence 99999999999999999998866 999999999999999997764 56778899999999999999999998887
Q ss_pred CcEEEeecCcccccceeeeecceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEE-ee--c---CCccceEEEEEe
Q 047728 331 GLVNFWERELNLSHGGVLRGHKLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICLS-ML--T---GHSGPVKCLAVE 403 (474)
Q Consensus 331 g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~--~---~h~~~v~~l~~~ 403 (474)
.|+.|++..+..+.. +.+|...+.+++.+ ..++++|++.|.+.+||.+++...... .. . .....|.+.+|.
T Consensus 341 -nik~w~~p~g~f~~n-lsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD 418 (460)
T KOG0285|consen 341 -NIKQWKLPEGEFLQN-LSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD 418 (460)
T ss_pred -cceeccCCccchhhc-cccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence 599999988876654 78899999999875 679999999999999999887522111 11 1 134578999999
Q ss_pred eCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 404 KDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 404 ~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
..+. .|++|..|.+|++|.-.+.
T Consensus 419 ktg~--------rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 419 KTGS--------RLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ccCc--------eEEeccCCcceEEEecccc
Confidence 9988 8999999999999987654
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.7e-36 Score=268.50 Aligned_cols=303 Identities=20% Similarity=0.274 Sum_probs=251.4
Q ss_pred ceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCc------cccccc----------cCccCEEEEEec--C
Q 047728 100 NVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQR------EFSGFK----------SNSGLVKAIVIS--N 158 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~------~~~~~~----------~h~~~V~~i~~~--~ 158 (474)
....+.+. |+.+|.+.+++ ..+|++|+.|-..++|++.. ....++ .....|++++|+ |
T Consensus 169 ~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G 247 (524)
T KOG0273|consen 169 SSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG 247 (524)
T ss_pred ccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC
Confidence 33344444 99999999988 33899999999999998543 111111 124579999999 8
Q ss_pred CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE
Q 047728 159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA 238 (474)
Q Consensus 159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 238 (474)
..|++|+.||.+++|+....... .+..|.++|.++.|+..|++|+++
T Consensus 248 ~~LatG~~~G~~riw~~~G~l~~---------------------------------tl~~HkgPI~slKWnk~G~yilS~ 294 (524)
T KOG0273|consen 248 TLLATGSEDGEARIWNKDGNLIS---------------------------------TLGQHKGPIFSLKWNKKGTYILSG 294 (524)
T ss_pred CeEEEeecCcEEEEEecCchhhh---------------------------------hhhccCCceEEEEEcCCCCEEEec
Confidence 89999999999999999876542 234499999999999999999999
Q ss_pred ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEc
Q 047728 239 SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAIS 318 (474)
Q Consensus 239 s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 318 (474)
+.|+++.+||..+++....+..|..+-..+.|-.+..+++.+.|+.|+|+.+.... +..++.+|.+.|.++.|+
T Consensus 295 ~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~------P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 295 GVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR------PVKTFIGHHGEVNALKWN 368 (524)
T ss_pred cCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCC------cceeeecccCceEEEEEC
Confidence 99999999999999999999999988788999888899999999999999987554 367788899999999999
Q ss_pred CCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe-----------cCCEEEEEeCCCcEEEEECCCCceEEE
Q 047728 319 PDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT-----------AGNLVFSGSADMSICIWRRKENEHICL 387 (474)
Q Consensus 319 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-----------~~~~l~sgs~dg~i~iwd~~~~~~~~~ 387 (474)
|.+.+|++++.|++++||........ .-+..|...+..+.+ .+..+++++.|++|++||+..+. ++
T Consensus 369 ~tg~LLaS~SdD~TlkiWs~~~~~~~-~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv--~i 445 (524)
T KOG0273|consen 369 PTGSLLASCSDDGTLKIWSMGQSNSV-HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV--PI 445 (524)
T ss_pred CCCceEEEecCCCeeEeeecCCCcch-hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc--ee
Confidence 99999999999999999998766544 456678777655543 25689999999999999999988 67
Q ss_pred EeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728 388 SMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP 461 (474)
Q Consensus 388 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p 461 (474)
..+..|+.+|.+++|+|+++ ++|+|+.||.|.+|++.+++ ..+...+ ...|..++|+-
T Consensus 446 ~~f~kH~~pVysvafS~~g~--------ylAsGs~dg~V~iws~~~~~-------l~~s~~~-~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 446 HTLMKHQEPVYSVAFSPNGR--------YLASGSLDGCVHIWSTKTGK-------LVKSYQG-TGGIFELCWNA 503 (524)
T ss_pred EeeccCCCceEEEEecCCCc--------EEEecCCCCeeEeccccchh-------eeEeecC-CCeEEEEEEcC
Confidence 88999999999999999999 99999999999999999883 3333333 34477786654
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-35 Score=276.31 Aligned_cols=377 Identities=21% Similarity=0.346 Sum_probs=285.3
Q ss_pred CCCCCCCCCCCCcCccCCC--------CCCCCCCCCCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc
Q 047728 70 DSSSPFSKSPWSTHHVSVP--------TPSNNDDGFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR 139 (474)
Q Consensus 70 ~~~~~~~~s~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~ 139 (474)
...+++.+||........- .|......+.|..+.++..+|-..|.++.|+ .++|++|+.|-+++||....
T Consensus 97 ~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~ 176 (893)
T KOG0291|consen 97 RGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDG 176 (893)
T ss_pred CccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecc
Confidence 3456677788765443321 1222233788999999999999999999997 67999999999999997442
Q ss_pred --c--ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeee----------------------------
Q 047728 140 --E--FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKR---------------------------- 185 (474)
Q Consensus 140 --~--~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~---------------------------- 185 (474)
. ...+.+|.+.|.+.-|. ...++|.+.||.+.+|..+.........
T Consensus 177 ~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~ 256 (893)
T KOG0291|consen 177 NKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKT 256 (893)
T ss_pred ccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEE
Confidence 2 45678999999999997 5579999999999999887221110000
Q ss_pred --ecccCccceeeeeecCCCCeEEEeeecccee--------------eeccCCeeEEEecCCCCEEEEEECC-CcEEEEE
Q 047728 186 --VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW--------------IKHFDAISSLSMSEDQNLLYSASWD-KTFKVWR 248 (474)
Q Consensus 186 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~h~~~V~~l~~~~~~~~l~s~s~d-g~i~iwd 248 (474)
.........+..+.+++...+.+.....+.+ .-...+|..++|+..|..|+.|+.. |.+.||+
T Consensus 257 ~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe 336 (893)
T KOG0291|consen 257 KKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE 336 (893)
T ss_pred EeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence 0000001222333334333333333332222 1133578889999999999988754 8999999
Q ss_pred cCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE
Q 047728 249 TSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG 327 (474)
Q Consensus 249 ~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 327 (474)
.++...+...++|...+++++++||| ++++|+.||.|+|||...+ ++..++..|...|+.+.|+..++.+++.
T Consensus 337 WqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg------fC~vTFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 337 WQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG------FCFVTFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred eeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc------eEEEEeccCCCceEEEEEEecCCEEEEe
Confidence 99998898999999999999999999 9999999999999998744 3688999999999999999999999999
Q ss_pred cCCCcEEEeecCcccccceeeeecceeeEEEE--ecCCEEEEEeCCC-cEEEEECCCCceEEEEeecCCccceEEEEEee
Q 047728 328 SSDGLVNFWERELNLSHGGVLRGHKLAILCLV--TAGNLVFSGSADM-SICIWRRKENEHICLSMLTGHSGPVKCLAVEK 404 (474)
Q Consensus 328 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sgs~dg-~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~ 404 (474)
+-||+|+.||+........+..+......|++ |.|.++++|+.|. .|.+|++++++ .+..+.||.+||.+++|+|
T Consensus 411 SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq--llDiLsGHEgPVs~l~f~~ 488 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ--LLDILSGHEGPVSGLSFSP 488 (893)
T ss_pred ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe--eeehhcCCCCcceeeEEcc
Confidence 99999999999887766555555555555555 5599999999885 79999999999 5788999999999999999
Q ss_pred CCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728 405 DDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 405 ~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
++. .|+++|.|.+||+|++-...... .++ .+...+..+ +|+|||+-|+.+
T Consensus 489 ~~~--------~LaS~SWDkTVRiW~if~s~~~v------Etl-~i~sdvl~v----sfrPdG~elaVa 538 (893)
T KOG0291|consen 489 DGS--------LLASGSWDKTVRIWDIFSSSGTV------ETL-EIRSDVLAV----SFRPDGKELAVA 538 (893)
T ss_pred ccC--------eEEeccccceEEEEEeeccCcee------eeE-eeccceeEE----EEcCCCCeEEEE
Confidence 999 99999999999999997652211 111 233345555 888999877653
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.1e-37 Score=269.82 Aligned_cols=275 Identities=24% Similarity=0.340 Sum_probs=237.8
Q ss_pred CcEEEEEE--cCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceee
Q 047728 111 GHIYSLAA--AGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHK 184 (474)
Q Consensus 111 ~~i~~~~~--~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~ 184 (474)
..|..+.+ +|+.|++|++.|.+.+|+.. .-...+++|..+|.++.|+ +.++++|+.+|.|++|+........
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~-- 174 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI-- 174 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH--
Confidence 34555554 58999999999999999854 2344578999999999998 7899999999999999987654321
Q ss_pred eecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcc
Q 047728 185 RVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDA 264 (474)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 264 (474)
....|...|++++|+|+...|+++++||+|+|||....+....+.+|.-.
T Consensus 175 ------------------------------~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwd 224 (464)
T KOG0284|consen 175 ------------------------------IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWD 224 (464)
T ss_pred ------------------------------hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCC
Confidence 11226689999999999999999999999999999999888899999999
Q ss_pred eeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc
Q 047728 265 VNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS 343 (474)
Q Consensus 265 v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 343 (474)
|.++.|+|.. ++++|+.|..|++||.+++. ++.++..|...|..+.|++++++|++++.|..+++||+++.+.
T Consensus 225 VksvdWHP~kgLiasgskDnlVKlWDprSg~------cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE 298 (464)
T KOG0284|consen 225 VKSVDWHPTKGLIASGSKDNLVKLWDPRSGS------CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE 298 (464)
T ss_pred cceeccCCccceeEEccCCceeEeecCCCcc------hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence 9999999987 99999999999999999776 4788899999999999999999999999999999999996554
Q ss_pred cceeeeecceeeEEEEe---cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEe
Q 047728 344 HGGVLRGHKLAILCLVT---AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSG 420 (474)
Q Consensus 344 ~~~~~~~~~~~v~~~~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~ 420 (474)
+ ...++|+..+.++.+ ...+|.+|+.||.|..|.+...+++ ...-.+|...|++++|+|-|. +|++|
T Consensus 299 l-~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~-~~i~~AHd~~iwsl~~hPlGh--------il~tg 368 (464)
T KOG0284|consen 299 L-FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL-GEIPPAHDGEIWSLAYHPLGH--------ILATG 368 (464)
T ss_pred H-HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc-cCCCcccccceeeeeccccce--------eEeec
Confidence 4 677899999988754 4789999999999999999855533 445568999999999999999 99999
Q ss_pred cCCCcEEEEEccC
Q 047728 421 SLDKSVKMWRVSE 433 (474)
Q Consensus 421 s~Dg~i~vw~~~~ 433 (474)
+.|.++++|.-..
T Consensus 369 snd~t~rfw~r~r 381 (464)
T KOG0284|consen 369 SNDRTVRFWTRNR 381 (464)
T ss_pred CCCcceeeeccCC
Confidence 9999999996543
No 19
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-34 Score=260.67 Aligned_cols=351 Identities=17% Similarity=0.251 Sum_probs=272.7
Q ss_pred CCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccc---cCccCEEEEEec--CCEEEEEeCC
Q 047728 97 FSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFK---SNSGLVKAIVIS--NEKIFSGHQD 167 (474)
Q Consensus 97 ~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~---~h~~~V~~i~~~--~~~l~s~~~d 167 (474)
=+|..+..++..|..-|+|+.++ |.++||++.||.|.+|| .++.+..+. +|.+.|.+++|+ +..++|++.|
T Consensus 177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD 256 (603)
T KOG0318|consen 177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD 256 (603)
T ss_pred CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC
Confidence 36778888999999999998865 88999999999999998 445555555 899999999998 5699999999
Q ss_pred CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEE-----------e-eeccceeeeccCCeeEEEecCCCCEE
Q 047728 168 GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV-----------R-RHRNGLWIKHFDAISSLSMSEDQNLL 235 (474)
Q Consensus 168 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~h~~~V~~l~~~~~~~~l 235 (474)
.+++|||+.+.++......... ...+.+.+.......+.+ . .....++.+|...|+++..++++++|
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i 335 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTI 335 (603)
T ss_pred ceEEEEEeeccceEEEeecCCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEE
Confidence 9999999999877655443332 112222222222221111 1 11335678999999999999999999
Q ss_pred EEEECCCcEEEEEcCCcceeeee-eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEE
Q 047728 236 YSASWDKTFKVWRTSDYKCLESV-IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTA 314 (474)
Q Consensus 236 ~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 314 (474)
++|+.||.|.-||..++..-... +.|...|.+++.+..+.+++.+.|.++++.++......... .........+
T Consensus 336 ~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~-----~~~lg~QP~~ 410 (603)
T KOG0318|consen 336 YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSE-----VVKLGSQPKG 410 (603)
T ss_pred EeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccc-----eeecCCCcee
Confidence 99999999999999988765544 67999999999988789999999999999998654432111 1122333448
Q ss_pred EEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCc
Q 047728 315 LAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHS 394 (474)
Q Consensus 315 l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~ 394 (474)
++..+++.+++..+.++.+.+=|.... .....+......+++++++.++.|+.|+.|+||.+..........+..|.
T Consensus 411 lav~~d~~~avv~~~~~iv~l~~~~~~---~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~ 487 (603)
T KOG0318|consen 411 LAVLSDGGTAVVACISDIVLLQDQTKV---SSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR 487 (603)
T ss_pred EEEcCCCCEEEEEecCcEEEEecCCcc---eeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence 899999888887777765555444432 23334566788999999999999999999999999887655556778899
Q ss_pred cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 395 GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
++|++++++||+. +||+|...+.|.+|++.+.+. ......-|+.+|+++ +||||.++++++|
T Consensus 488 a~iT~vaySpd~~--------yla~~Da~rkvv~yd~~s~~~------~~~~w~FHtakI~~~----aWsP~n~~vATGS 549 (603)
T KOG0318|consen 488 AAITDVAYSPDGA--------YLAAGDASRKVVLYDVASREV------KTNRWAFHTAKINCV----AWSPNNKLVATGS 549 (603)
T ss_pred CCceEEEECCCCc--------EEEEeccCCcEEEEEcccCce------ecceeeeeeeeEEEE----EeCCCceEEEecc
Confidence 9999999999999 999999999999999998753 223344599999999 7788899998886
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.5e-36 Score=251.20 Aligned_cols=282 Identities=23% Similarity=0.329 Sum_probs=238.9
Q ss_pred eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC---ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728 101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ---REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW 173 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~---~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw 173 (474)
..+..+.+|++.|+.+.|+ |.+||+|+.|..|.+|+.. +....+++|.++|..+.|. +..|++++.|.+|+.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 3445678999999998876 8899999999999999843 4466778999999999997 7799999999999999
Q ss_pred ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC-CEEEEEECCCcEEEEEcCCc
Q 047728 174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ-NLLYSASWDKTFKVWRTSDY 252 (474)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~ 252 (474)
|+++++.... +.+|..-|+++.-+.-| .++.+++.|+++++||+++.
T Consensus 118 D~~tG~~~rk--------------------------------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 118 DAETGKRIRK--------------------------------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK 165 (338)
T ss_pred ecccceeeeh--------------------------------hccccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence 9999987643 34488899998754433 56778999999999999999
Q ss_pred ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC
Q 047728 253 KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG 331 (474)
Q Consensus 253 ~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 331 (474)
+.++++.. .-.++++.|..++ .+++|+-|+.|++||++... ....+.+|...|+.+..+++|.++++-+.|.
T Consensus 166 ~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d------~~~~lsGh~DtIt~lsls~~gs~llsnsMd~ 238 (338)
T KOG0265|consen 166 EAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND------GLYTLSGHADTITGLSLSRYGSFLLSNSMDN 238 (338)
T ss_pred chhhcccc-ceeEEEEEecccccceeeccccCceeeeccccCc------ceEEeecccCceeeEEeccCCCccccccccc
Confidence 88888754 5678999999888 99999999999999998655 3678899999999999999999999999999
Q ss_pred cEEEeecCccc---ccceeeeeccee------eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEE
Q 047728 332 LVNFWERELNL---SHGGVLRGHKLA------ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAV 402 (474)
Q Consensus 332 ~i~v~d~~~~~---~~~~~~~~~~~~------v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~ 402 (474)
++++||++... ....++.+|.-. -.+++|++..+.+|+.|..+++||..... .+..+.+|.+.|++++|
T Consensus 239 tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~--~lyklpGh~gsvn~~~F 316 (338)
T KOG0265|consen 239 TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR--ILYKLPGHYGSVNEVDF 316 (338)
T ss_pred eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc--EEEEcCCcceeEEEeee
Confidence 99999987542 222344444322 26678899999999999999999998866 67899999999999999
Q ss_pred eeCCccccccceEEEEEecCCCcEEEEEc
Q 047728 403 EKDDESLSREKRWILYSGSLDKSVKMWRV 431 (474)
Q Consensus 403 ~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~ 431 (474)
+|... +|.+++.|.+|.+=++
T Consensus 317 hp~e~--------iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 317 HPTEP--------IILSCSSDKTIYLGEI 337 (338)
T ss_pred cCCCc--------EEEEeccCceeEeecc
Confidence 99998 9999999999987443
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.7e-35 Score=241.00 Aligned_cols=273 Identities=17% Similarity=0.344 Sum_probs=235.0
Q ss_pred CCCCcceeeeeeeeecCcEEEEEE--cCCEEEEeeCCCcEEEEeCC----ccccccccCccCEEEEEec--CCEEEEEeC
Q 047728 95 DGFSPNVLIGSLVREEGHIYSLAA--AGDLLYTGSDSKNIRVWKNQ----REFSGFKSNSGLVKAIVIS--NEKIFSGHQ 166 (474)
Q Consensus 95 ~~~~~~~~~~~l~~h~~~i~~~~~--~~~~l~tgs~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~--~~~l~s~~~ 166 (474)
+......+.+++...++.|+++.. ++++||+|+.- .||+||+. .++..+.+|...|+++.|. ++.++||++
T Consensus 25 Wqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse 103 (311)
T KOG0315|consen 25 WQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE 103 (311)
T ss_pred eehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCC
Confidence 344566888899988999998774 57788888865 69999954 4788999999999999998 889999999
Q ss_pred CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEE
Q 047728 167 DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKV 246 (474)
Q Consensus 167 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i 246 (474)
||+++|||+....+... ..|..+|+++..+|+...|++|..+|.|++
T Consensus 104 Dgt~kIWdlR~~~~qR~---------------------------------~~~~spVn~vvlhpnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 104 DGTVKIWDLRSLSCQRN---------------------------------YQHNSPVNTVVLHPNQTELISGDQSGNIRV 150 (311)
T ss_pred CceEEEEeccCcccchh---------------------------------ccCCCCcceEEecCCcceEEeecCCCcEEE
Confidence 99999999998544322 227899999999999999999999999999
Q ss_pred EEcCCcceeeeeee-cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEE
Q 047728 247 WRTSDYKCLESVIA-HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIV 324 (474)
Q Consensus 247 wd~~~~~~~~~~~~-~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 324 (474)
||+.+..+...+.. ...+|.++...||| +++.+...|...+|++..........+...+..|...+..+.++|++++|
T Consensus 151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred EEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence 99998877666543 45689999999999 89999999999999998766666677788899999999999999999999
Q ss_pred EEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEE
Q 047728 325 YCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAV 402 (474)
Q Consensus 325 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~ 402 (474)
++++.|.+++||+.++.......+.+|...+ ..|+.++.||++|+.|+.+++||+..++ .+....+|..+..|++.
T Consensus 231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k--~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK--EVRQYQGHHKAAVCVAL 308 (311)
T ss_pred EeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc--eeeecCCcccccEEEEe
Confidence 9999999999999998866667788897776 5677789999999999999999999988 46788899888888876
Q ss_pred e
Q 047728 403 E 403 (474)
Q Consensus 403 ~ 403 (474)
.
T Consensus 309 n 309 (311)
T KOG0315|consen 309 N 309 (311)
T ss_pred e
Confidence 4
No 22
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.1e-37 Score=264.60 Aligned_cols=272 Identities=27% Similarity=0.430 Sum_probs=234.8
Q ss_pred CccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEE
Q 047728 147 NSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL 226 (474)
Q Consensus 147 h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 226 (474)
....|.|+.++.+.+++|..|.+|+|||..+..+. ..+.||++.|.|+
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~--------------------------------~~L~GHtGSVLCL 243 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECL--------------------------------KILTGHTGSVLCL 243 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccHHHH--------------------------------HhhhcCCCcEEee
Confidence 56689999999999999999999999999887654 3557799999999
Q ss_pred EecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeee
Q 047728 227 SMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLL 306 (474)
Q Consensus 227 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (474)
.|. .+.|++|+.|.+|++||+++++++.++..|...|..+.|+ +|++++++.|.++.+||+.... ...+...+.
T Consensus 244 qyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps---~it~rrVLv 317 (499)
T KOG0281|consen 244 QYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPT---DITLRRVLV 317 (499)
T ss_pred ecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCch---HHHHHHHHh
Confidence 985 5699999999999999999999999999999999999997 5699999999999999997554 233456778
Q ss_pred cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEE
Q 047728 307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHIC 386 (474)
Q Consensus 307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~ 386 (474)
+|...|..+.|+ .+++++++.|.+|++|++.+...+ ..+.+|+..+.|+...++++++|+.|.+|++||+..+. +
T Consensus 318 GHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efv-Rtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~--c 392 (499)
T KOG0281|consen 318 GHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFV-RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA--C 392 (499)
T ss_pred hhhhheeeeccc--cceEEEecCCceEEEEeccceeee-hhhhcccccceehhccCeEEEecCCCceEEEEeccccH--H
Confidence 999999999996 459999999999999999988655 68889999999999999999999999999999999998 7
Q ss_pred EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCC--CCCcccccccCCCCCCCccccCC---
Q 047728 387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL--VSTTQQHPLEGHGVAPNSLPYAP--- 461 (474)
Q Consensus 387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~--~~~~~~~~~~~~~~~v~~l~~~p--- 461 (474)
+..+.+|..-|.|+.|... .+++|+.||+|+|||+..+..+. ....+...+-.|+++|-.+.|.-
T Consensus 393 LRvLeGHEeLvRciRFd~k----------rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqI 462 (499)
T KOG0281|consen 393 LRVLEGHEELVRCIRFDNK----------RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQI 462 (499)
T ss_pred HHHHhchHHhhhheeecCc----------eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEE
Confidence 8899999999999999654 69999999999999999875553 23346667778888888887753
Q ss_pred -CCCcCCceee
Q 047728 462 -SFSSQGRICQ 471 (474)
Q Consensus 462 -~~s~Dg~~l~ 471 (474)
+.|.|..+|+
T Consensus 463 vsssHddtILi 473 (499)
T KOG0281|consen 463 ISSSHDDTILI 473 (499)
T ss_pred EeccCCCeEEE
Confidence 3355555553
No 23
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-35 Score=260.14 Aligned_cols=287 Identities=23% Similarity=0.355 Sum_probs=237.6
Q ss_pred cceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC-----ccccccccCccCEEEEEec--CCEEEEEeCCCe
Q 047728 99 PNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ-----REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGK 169 (474)
Q Consensus 99 ~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~-----~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~ 169 (474)
|.+-...|..|+..|+-+.|+ |+|||+|+.|.+..+|++- +...++.+|..+|..+.|+ .++|++|+.|..
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence 445556788999999998887 9999999999999999733 3467788999999999999 569999999999
Q ss_pred EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728 170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT 249 (474)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~ 249 (474)
+++||+.++....... .+|...+.+++|.||+..+++|+.|++|..||+
T Consensus 293 ~~lwDv~tgd~~~~y~-------------------------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl 341 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYP-------------------------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL 341 (519)
T ss_pred eeeccCCcchhhhhcc-------------------------------cCcCCCcceeEEccCCceeEecCCCCcEEEecC
Confidence 9999999997653222 125578999999999999999999999999998
Q ss_pred CCcceeeeeeec-CcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE
Q 047728 250 SDYKCLESVIAH-DDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG 327 (474)
Q Consensus 250 ~~~~~~~~~~~~-~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 327 (474)
. |+.+...++- ...|.+++..+|| .+++.+.|..|++++.+.... ..+.....+|++++++.+++++++.
T Consensus 342 D-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d-------r~lise~~~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 342 D-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD-------RGLISEEQPITSFSISKDGKLALVN 413 (519)
T ss_pred C-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh-------hccccccCceeEEEEcCCCcEEEEE
Confidence 5 4445555443 3568999999999 888888999999999875432 2245567789999999999999999
Q ss_pred cCCCcEEEeecCcccccceeeeecceee----EEEEe-cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEE
Q 047728 328 SSDGLVNFWERELNLSHGGVLRGHKLAI----LCLVT-AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAV 402 (474)
Q Consensus 328 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v----~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~ 402 (474)
-.+..+++||++.... .....+|+..- .||.- +..++++|++|+.|+||+..+++ ++.++.||...|+|++|
T Consensus 414 L~~qei~LWDl~e~~l-v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk--ll~~LsGHs~~vNcVsw 490 (519)
T KOG0293|consen 414 LQDQEIHLWDLEENKL-VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK--LLAVLSGHSKTVNCVSW 490 (519)
T ss_pred cccCeeEEeecchhhH-HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc--eeEeecCCcceeeEEec
Confidence 9999999999995544 34555666443 33433 45899999999999999999998 67899999999999999
Q ss_pred eeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 403 EKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 403 ~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+|.... ++|++|+||+||||.....
T Consensus 491 NP~~p~-------m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 491 NPADPE-------MFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCCCHH-------HhhccCCCCeEEEecCCcc
Confidence 999876 8999999999999988654
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.4e-36 Score=283.65 Aligned_cols=270 Identities=23% Similarity=0.380 Sum_probs=217.6
Q ss_pred CccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728 147 NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS 224 (474)
Q Consensus 147 h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 224 (474)
-...++|..|+ ..+||.|-.|..|++|.+...+.........+.... .-.........-.-.......+.+|.++|.
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d-~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNID-TESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhcccc-ccccchhhhhccccCCceeEEeecCCCcee
Confidence 34567777887 447777788888888888764322211111111100 000000000000111112234789999999
Q ss_pred EEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeee
Q 047728 225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQ 303 (474)
Q Consensus 225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 303 (474)
.+.|+|+.++|+++++|+++++|.+.+..++..+++|..+|+++.|+|-| ++++++.|++-++|...... +..
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~------PlR 529 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK------PLR 529 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC------chh
Confidence 99999999999999999999999999999999999999999999999999 99999999999999877543 467
Q ss_pred eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCC
Q 047728 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKE 381 (474)
Q Consensus 304 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~ 381 (474)
.+.+|-+.|.|+.|+|+..++++|+.|.+|++||..++..+ +++.+|..+| ++++|+|.+|++|+.||.|.+||+.+
T Consensus 530 ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V-RiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV-RIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE-EEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence 88899999999999999999999999999999999998775 7789999888 45677899999999999999999999
Q ss_pred CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 382 NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 382 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+. .+..+.+|++.|.++.|+.++. +||+|+.|.+|++||+...
T Consensus 609 ~~--~v~~l~~Ht~ti~SlsFS~dg~--------vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 609 GS--LVKQLKGHTGTIYSLSFSRDGN--------VLASGGADNSVRLWDLTKV 651 (707)
T ss_pred Cc--chhhhhcccCceeEEEEecCCC--------EEEecCCCCeEEEEEchhh
Confidence 88 5678999999999999999999 9999999999999999765
No 25
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=270.58 Aligned_cols=236 Identities=28% Similarity=0.411 Sum_probs=196.9
Q ss_pred eeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee-------------------------------------
Q 047728 216 WIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV------------------------------------- 258 (474)
Q Consensus 216 ~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------------------------------------- 258 (474)
+.+|...|.+++++.+...+++|+ .+.|++|+..+.++++++
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~ 447 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLV 447 (888)
T ss_pred eccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhh
Confidence 457888999999998877666665 567999988877766533
Q ss_pred ---eecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC--cee----eeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728 259 ---IAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK--GTK----HFFSQTLLKQECAVTALAISPDAAIVYCGS 328 (474)
Q Consensus 259 ---~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~--~~~----~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 328 (474)
.+|.+.++.++..||+ .+++|+.|.+|++||...... +.+ .........-+..|.|+.++||+++|+++-
T Consensus 448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence 3799999999999999 999999999999999764222 111 111223345577899999999999999999
Q ss_pred CCCcEEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728 329 SDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD 406 (474)
Q Consensus 329 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 406 (474)
-|.++++|-+++-+-. -.+.||..+|+|+ +||+++++||+.|..|+||-++-+. |-..+-+|...|.++.|.|+.
T Consensus 528 LdnTVkVyflDtlKFf-lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD--CHKS~fAHdDSvm~V~F~P~~ 604 (888)
T KOG0306|consen 528 LDNTVKVYFLDTLKFF-LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD--CHKSFFAHDDSVMSVQFLPKT 604 (888)
T ss_pred ccCeEEEEEecceeee-eeecccccceeEEeccCCcCeEEeccCCCceEEeccccch--hhhhhhcccCceeEEEEcccc
Confidence 9999999998876433 4567999998775 6799999999999999999999888 778899999999999999988
Q ss_pred ccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 407 ESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 407 ~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
. ++.++|.|+.|+-||-..- ...+.+.+|...|.++ +.+|+|++++++|
T Consensus 605 ~--------~FFt~gKD~kvKqWDg~kF-------e~iq~L~~H~~ev~cL----av~~~G~~vvs~s 653 (888)
T KOG0306|consen 605 H--------LFFTCGKDGKVKQWDGEKF-------EEIQKLDGHHSEVWCL----AVSPNGSFVVSSS 653 (888)
T ss_pred e--------eEEEecCcceEEeechhhh-------hhheeeccchheeeee----EEcCCCCeEEecc
Confidence 7 8999999999999997765 6778899999999888 8899999999986
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-35 Score=252.72 Aligned_cols=295 Identities=23% Similarity=0.386 Sum_probs=249.8
Q ss_pred CCEEEEeeCCCcEEE---EeCC-ccccccccCccCEEEEEecCC--EEEEEeCCCeEEEEecCCCCcceeeeecccCccc
Q 047728 120 GDLLYTGSDSKNIRV---WKNQ-REFSGFKSNSGLVKAIVISNE--KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFK 193 (474)
Q Consensus 120 ~~~l~tgs~dg~v~v---wd~~-~~~~~~~~h~~~V~~i~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 193 (474)
++-|+.|.-.+..+. |=.. .+...+.+|..+|+.+.+.+. .+++++.|++|++||..+++..
T Consensus 76 ~~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e------------ 143 (406)
T KOG0295|consen 76 GDELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE------------ 143 (406)
T ss_pred ccccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh------------
Confidence 344555544444444 4333 456677889999999999955 5777888999999999999863
Q ss_pred eeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC-cceeeeeeecCcceeEEEecC
Q 047728 194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD-YKCLESVIAHDDAVNSIVAGF 272 (474)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~ 272 (474)
..+++|++.|.+|+|+..|++|++++.|-.+++||..+ .+++..+.+|+..|.+++|.|
T Consensus 144 --------------------~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P 203 (406)
T KOG0295|consen 144 --------------------RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP 203 (406)
T ss_pred --------------------hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEe
Confidence 24567999999999999999999999999999999987 678889999999999999999
Q ss_pred CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeec
Q 047728 273 DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGH 351 (474)
Q Consensus 273 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 351 (474)
.| .+++++.|.+|+.|++.++- +...+.+|...|..++.+.||.++++++.|.++++|-+.++.+. ..++.|
T Consensus 204 ~gd~ilS~srD~tik~We~~tg~------cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k-~~lR~h 276 (406)
T KOG0295|consen 204 LGDHILSCSRDNTIKAWECDTGY------CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK-AELREH 276 (406)
T ss_pred cCCeeeecccccceeEEecccce------eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhh-hhhhcc
Confidence 99 99999999999999998664 57888999999999999999999999999999999999887543 455566
Q ss_pred ceeeEEEE--ec---------------CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccce
Q 047728 352 KLAILCLV--TA---------------GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKR 414 (474)
Q Consensus 352 ~~~v~~~~--~~---------------~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~ 414 (474)
.-++-|++ |. +.++.+++.|++|++||+.++. |+.++.+|...|..++|+|.|+
T Consensus 277 Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~--cL~tL~ghdnwVr~~af~p~Gk------- 347 (406)
T KOG0295|consen 277 EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM--CLFTLVGHDNWVRGVAFSPGGK------- 347 (406)
T ss_pred ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe--EEEEEecccceeeeeEEcCCCe-------
Confidence 65554443 21 3599999999999999999997 8999999999999999999999
Q ss_pred EEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 415 WILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 415 ~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
||+++.+|+++++||+++. .++..+..|...++++.|+-++- ++++||
T Consensus 348 -yi~ScaDDktlrvwdl~~~-------~cmk~~~ah~hfvt~lDfh~~~p----~VvTGs 395 (406)
T KOG0295|consen 348 -YILSCADDKTLRVWDLKNL-------QCMKTLEAHEHFVTSLDFHKTAP----YVVTGS 395 (406)
T ss_pred -EEEEEecCCcEEEEEeccc-------eeeeccCCCcceeEEEecCCCCc----eEEecc
Confidence 9999999999999999998 78888999999999997765543 666664
No 27
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=249.48 Aligned_cols=315 Identities=16% Similarity=0.219 Sum_probs=257.8
Q ss_pred ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeC--CccccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728 100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW 173 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw 173 (474)
..-+.+|..|++.|++++.+ .++++||+.|..-.||+. +.....+.+|...|+++.|+ +.+|+||+.+|.|+||
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 34566889999999998755 779999999999999994 45677889999999999998 8899999999999999
Q ss_pred ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc
Q 047728 174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK 253 (474)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 253 (474)
+..++....... ..-..|.-+.|+|.+..|++|+.||.|.+|.+.++.
T Consensus 134 ~~stg~~~~~~~--------------------------------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~ 181 (399)
T KOG0296|consen 134 KVSTGGEQWKLD--------------------------------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA 181 (399)
T ss_pred EcccCceEEEee--------------------------------cccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence 999886543221 144567889999999999999999999999999988
Q ss_pred eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728 254 CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL 332 (474)
Q Consensus 254 ~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 332 (474)
..+.+.+|..++++=.|.|+| +++++..||+|++||+.+... .............++.++..+..++.|..++.
T Consensus 182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p-----~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 182 LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP-----LHKITQAEGLELPCISLNLAGSTLTKGNSEGV 256 (399)
T ss_pred eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce-----eEEecccccCcCCccccccccceeEeccCCcc
Confidence 889999999999999999999 999999999999999987653 11222222456788899999999999999999
Q ss_pred EEEeecCcccccceee-------eecceeeEE-----EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEE
Q 047728 333 VNFWERELNLSHGGVL-------RGHKLAILC-----LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCL 400 (474)
Q Consensus 333 i~v~d~~~~~~~~~~~-------~~~~~~v~~-----~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l 400 (474)
+++-+..+++.+.... ..+...+-| ++..=.+.|+|+.||+|.|||+...+ ++..-.|..+|+.+
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~---~R~~c~he~~V~~l 333 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST---LRHICEHEDGVTKL 333 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch---hheeccCCCceEEE
Confidence 9988876665442222 122222222 22234688999999999999998776 44566799999999
Q ss_pred EEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 401 AVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
.|.+ .. +|++++.||.|++||.+++ .+.....||...|..+ +++||++++++.|
T Consensus 334 ~w~~-t~--------~l~t~c~~g~v~~wDaRtG-------~l~~~y~GH~~~Il~f----~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 334 KWLN-TD--------YLLTACANGKVRQWDARTG-------QLKFTYTGHQMGILDF----ALSPQKRLVVTVS 387 (399)
T ss_pred EEcC-cc--------hheeeccCceEEeeecccc-------ceEEEEecCchheeEE----EEcCCCcEEEEec
Confidence 9999 44 8999999999999999999 6778899999999988 7788999999876
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.3e-35 Score=272.37 Aligned_cols=292 Identities=21% Similarity=0.301 Sum_probs=249.6
Q ss_pred CCCcceeeeeeeeecCcEEEEEEcC---CEEEEeeCCCcEEEEeCCcc-ccccccCccCEEEEE-ec-CCEEEEEeCCCe
Q 047728 96 GFSPNVLIGSLVREEGHIYSLAAAG---DLLYTGSDSKNIRVWKNQRE-FSGFKSNSGLVKAIV-IS-NEKIFSGHQDGK 169 (474)
Q Consensus 96 ~~~~~~~~~~l~~h~~~i~~~~~~~---~~l~tgs~dg~v~vwd~~~~-~~~~~~h~~~V~~i~-~~-~~~l~s~~~dg~ 169 (474)
.....++.+.+.|..+.|..+.|-| ++||.++..+.+|+|+.... -..+.+|+..|.++. ++ +..|+||+.|.+
T Consensus 309 d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~s 388 (775)
T KOG0319|consen 309 DEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKS 388 (775)
T ss_pred EccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCce
Confidence 3355677788899999999999886 79999999999999986533 346789999999999 44 779999999999
Q ss_pred EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCCcEEEEE
Q 047728 170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDKTFKVWR 248 (474)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd 248 (474)
+++|.++.+...... .+...+|+..|.+++++.. ..+|++++.|+++++|+
T Consensus 389 vilWr~~~~~~~~~~----------------------------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~ 440 (775)
T KOG0319|consen 389 VILWRLNNNCSKSLC----------------------------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWD 440 (775)
T ss_pred EEEEEecCCcchhhh----------------------------hhhhcccccccceeeecccCccEEEEecCCceEEEec
Confidence 999999554332111 1234569999999999774 47899999999999999
Q ss_pred cCCcce---------eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEc
Q 047728 249 TSDYKC---------LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAIS 318 (474)
Q Consensus 249 ~~~~~~---------~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 318 (474)
+...+. ..+...|+..|++++++|+. ++++|+.|.+.+||+++... ....+.+|...|.++.|+
T Consensus 441 l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~------l~~vLsGH~RGvw~V~Fs 514 (775)
T KOG0319|consen 441 LPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR------LLGVLSGHTRGVWCVSFS 514 (775)
T ss_pred CCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce------EEEEeeCCccceEEEEec
Confidence 976221 11334699999999999998 99999999999999998333 578899999999999999
Q ss_pred CCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccc
Q 047728 319 PDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGP 396 (474)
Q Consensus 319 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~ 396 (474)
|..+.+++++.|++|+||.+.+..+. +.+.+|...|+..++ ++..|++++.||.|++|++.+++ |+.++.+|.+.
T Consensus 515 ~~dq~laT~SgD~TvKIW~is~fSCl-kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e--C~~tlD~H~Dr 591 (775)
T KOG0319|consen 515 KNDQLLATCSGDKTVKIWSISTFSCL-KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE--CEMTLDAHNDR 591 (775)
T ss_pred cccceeEeccCCceEEEEEeccceee-eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh--hhhhhhhccce
Confidence 99999999999999999999988776 678899999977665 79999999999999999999998 89999999999
Q ss_pred eEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 397 VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 397 v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
|++++.++... +++||+.||.|.+|.=.
T Consensus 592 vWaL~~~~~~~--------~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 592 VWALSVSPLLD--------MFVTGGGDGRIIFWKDV 619 (775)
T ss_pred eEEEeecCccc--------eeEecCCCeEEEEeecC
Confidence 99999999998 89999999999999643
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.8e-34 Score=253.29 Aligned_cols=271 Identities=21% Similarity=0.329 Sum_probs=234.6
Q ss_pred CcEEEEEEc--CCEEEEeeCCCcEEEEe-CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728 111 GHIYSLAAA--GDLLYTGSDSKNIRVWK-NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKR 185 (474)
Q Consensus 111 ~~i~~~~~~--~~~l~tgs~dg~v~vwd-~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 185 (474)
..|++++++ |.+||+|+.||.++||+ .+..+..+..|.++|.++.|+ +++|++++.|+++.+||..++.....+.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence 458999998 99999999999999998 557788899999999999999 7899999999999999998887665443
Q ss_pred ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcce
Q 047728 186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV 265 (474)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v 265 (474)
+ |..+-.++.|-. ...+++++.|+.|+++.+....++.++.+|.+.|
T Consensus 316 ~--------------------------------~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V 362 (524)
T KOG0273|consen 316 F--------------------------------HSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEV 362 (524)
T ss_pred e--------------------------------ccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCce
Confidence 3 666656788864 4578999999999999999999999999999999
Q ss_pred eEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC---------CEEEEEcCCCcEEE
Q 047728 266 NSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA---------AIVYCGSSDGLVNF 335 (474)
Q Consensus 266 ~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---------~~l~~~~~dg~i~v 335 (474)
.++.|.|.+ +|++++.|++++||...... ....+..|...|..+.|+|.+ ..+++++.|++|++
T Consensus 363 ~alk~n~tg~LLaS~SdD~TlkiWs~~~~~------~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~l 436 (524)
T KOG0273|consen 363 NALKWNPTGSLLASCSDDGTLKIWSMGQSN------SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKL 436 (524)
T ss_pred EEEEECCCCceEEEecCCCeeEeeecCCCc------chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEE
Confidence 999999999 99999999999999976544 366788899999999999954 47999999999999
Q ss_pred eecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccc
Q 047728 336 WERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREK 413 (474)
Q Consensus 336 ~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 413 (474)
||+..+.++ ..+..|..+|.++ +++|.++++|+.||.|.||+.++++ .+.... -.+.|..++|+.++.
T Consensus 437 wdv~~gv~i-~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~--l~~s~~-~~~~Ifel~Wn~~G~------ 506 (524)
T KOG0273|consen 437 WDVESGVPI-HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK--LVKSYQ-GTGGIFELCWNAAGD------ 506 (524)
T ss_pred EEccCCcee-EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh--eeEeec-CCCeEEEEEEcCCCC------
Confidence 999988776 4566788888555 5679999999999999999999998 334444 456799999999998
Q ss_pred eEEEEEecCCCcEEEEEcc
Q 047728 414 RWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 414 ~~~l~s~s~Dg~i~vw~~~ 432 (474)
.|..+-.|+.+++-|++
T Consensus 507 --kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 507 --KLGACASDGSVCVLDLR 523 (524)
T ss_pred --EEEEEecCCCceEEEec
Confidence 89999999999999875
No 30
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.9e-34 Score=249.15 Aligned_cols=280 Identities=22% Similarity=0.389 Sum_probs=236.7
Q ss_pred eecCcEEEEEEcCCEEEEeeCCCcEEEEe-CCccccccccCccCEEEEEec--C---CEEEEEeCCCeEEEEecCCCCcc
Q 047728 108 REEGHIYSLAAAGDLLYTGSDSKNIRVWK-NQREFSGFKSNSGLVKAIVIS--N---EKIFSGHQDGKIRVWKVSSKDAS 181 (474)
Q Consensus 108 ~h~~~i~~~~~~~~~l~tgs~dg~v~vwd-~~~~~~~~~~h~~~V~~i~~~--~---~~l~s~~~dg~i~vwd~~~~~~~ 181 (474)
-|.+-|.++.-.++.|++|+.||.+++|| .++....+.+|.++|.++++. + ..+++++.|.++++|.++.++..
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~ 182 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK 182 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh
Confidence 47788888888899999999999999999 457888999999999988885 3 35999999999999999887654
Q ss_pred eeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC-----------
Q 047728 182 IHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS----------- 250 (474)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~----------- 250 (474)
.... ..-.||...|-+++..+++..+++|+.|.+|+||+..
T Consensus 183 ~~~~----------------------------~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s 234 (423)
T KOG0313|consen 183 VKAL----------------------------KVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSS 234 (423)
T ss_pred hhHH----------------------------hHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccc
Confidence 2211 1123699999999999999999999999999999932
Q ss_pred --------------CcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEE
Q 047728 251 --------------DYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALA 316 (474)
Q Consensus 251 --------------~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~ 316 (474)
++.++.++.+|..+|.++.|.+.+.+++++.|.+|+.||+..++. .........+.++.
T Consensus 235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~-------~~~~~~~ksl~~i~ 307 (423)
T KOG0313|consen 235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL-------KSTLTTNKSLNCIS 307 (423)
T ss_pred hhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccc-------eeeeecCcceeEee
Confidence 123556788999999999999977999999999999999998764 23334456799999
Q ss_pred EcCCCCEEEEEcCCCcEEEeecCcc--cccceeeeecceeeEEEEe---cCCEEEEEeCCCcEEEEECCCCceEEEEeec
Q 047728 317 ISPDAAIVYCGSSDGLVNFWERELN--LSHGGVLRGHKLAILCLVT---AGNLVFSGSADMSICIWRRKENEHICLSMLT 391 (474)
Q Consensus 317 ~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~~v~~~~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~ 391 (474)
.+|..++|++|+.|..|++||.+++ ......+.+|...|.++.+ +..+|++|+.|+++++||+++.... +..+.
T Consensus 308 ~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p-lydI~ 386 (423)
T KOG0313|consen 308 YSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP-LYDIA 386 (423)
T ss_pred cccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc-ceeec
Confidence 9999999999999999999999876 4455677899998876665 3678999999999999999987643 78899
Q ss_pred CCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 392 GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 392 ~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
+|...|.++.|.... ++++||.|.+|+|+.-.
T Consensus 387 ~h~DKvl~vdW~~~~---------~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 387 GHNDKVLSVDWNEGG---------LIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCceEEEEeccCCc---------eEEeccCcceEEEeccc
Confidence 999999999998765 69999999999998754
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=273.68 Aligned_cols=283 Identities=26% Similarity=0.467 Sum_probs=237.3
Q ss_pred eeeeeee-cCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--c--cccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728 103 IGSLVRE-EGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--R--EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW 173 (474)
Q Consensus 103 ~~~l~~h-~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~--~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw 173 (474)
...+.+| ...|.++.++ |++|++++.|+.+++|+.. + ....+.+|...|..++|+ +.++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 5556555 5678886665 8999999999999999852 3 455668899999999998 6699999999999999
Q ss_pred ecCCC-CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc
Q 047728 174 KVSSK-DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY 252 (474)
Q Consensus 174 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 252 (474)
|+... ... .++.+|...|++++|+|+++++++|+.|++|+|||++++
T Consensus 231 d~~~~~~~~--------------------------------~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 231 DLKDDGRNL--------------------------------KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred eccCCCeEE--------------------------------EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence 99433 322 245679999999999999999999999999999999999
Q ss_pred ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc--cEEEEEEcCCCCEEEEEcC
Q 047728 253 KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC--AVTALAISPDAAIVYCGSS 329 (474)
Q Consensus 253 ~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~ 329 (474)
+++..+.+|.+.|.+++|++++ .|++++.|+.|++||+..+... +......+.. ++++++|+|++.++++++.
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL----CLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee----eeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 9999999999999999999999 8999999999999999866532 1233334333 5999999999999999999
Q ss_pred CCcEEEeecCcccccceeeeecceeeEEE-----EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC-ccceEEEEEe
Q 047728 330 DGLVNFWERELNLSHGGVLRGHKLAILCL-----VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH-SGPVKCLAVE 403 (474)
Q Consensus 330 dg~i~v~d~~~~~~~~~~~~~~~~~v~~~-----~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~~~ 403 (474)
|+.+++||+...... ....+|...+.|+ ...+.++++|+.|+.|++||..++. .+..+.+| ...+..+.++
T Consensus 355 d~~~~~w~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~--~~~~l~~h~~~~~~~~~~~ 431 (456)
T KOG0266|consen 355 DRTLKLWDLRSGKSV-GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG--ILQRLEGHSKAAVSDLSSH 431 (456)
T ss_pred CCeEEEEEccCCcce-eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc--hhhhhcCCCCCceeccccC
Confidence 999999999987655 4445555543333 4479999999999999999999876 46788899 8999999999
Q ss_pred eCCccccccceEEEEEec--CCCcEEEEEcc
Q 047728 404 KDDESLSREKRWILYSGS--LDKSVKMWRVS 432 (474)
Q Consensus 404 ~~~~~~~~~~~~~l~s~s--~Dg~i~vw~~~ 432 (474)
+... ++++++ .|+.|++|...
T Consensus 432 ~~~~--------~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 432 PTEN--------LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCcC--------eeeecCcCCCceEEEecCC
Confidence 9998 899888 79999999864
No 32
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8e-33 Score=254.50 Aligned_cols=279 Identities=33% Similarity=0.555 Sum_probs=232.7
Q ss_pred eeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecC
Q 047728 103 IGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVS 176 (474)
Q Consensus 103 ~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~ 176 (474)
++++.+|++.|.+++++ +++|++++.||.|++|+.. +....+..|...+..+.|. ++.|++++.||.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 45678999999999987 6899999999999999854 3556778899999899998 4589999999999999998
Q ss_pred CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee
Q 047728 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE 256 (474)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 256 (474)
.++... .+..|...|.++.|++++.++++++.|+.|++||+.+++...
T Consensus 82 ~~~~~~--------------------------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 129 (289)
T cd00200 82 TGECVR--------------------------------TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT 129 (289)
T ss_pred cccceE--------------------------------EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE
Confidence 764321 223478899999999998888888889999999999999999
Q ss_pred eeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEE
Q 047728 257 SVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335 (474)
Q Consensus 257 ~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v 335 (474)
.+..|...+.++.++|++ ++++++.|+.|++||++.... ......+...+.+++|+|+++.+++++.++.|++
T Consensus 130 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 203 (289)
T cd00200 130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC------VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203 (289)
T ss_pred EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc------ceeEecCccccceEEECCCcCEEEEecCCCcEEE
Confidence 998899999999999988 666666699999999975432 3444577789999999999999999999999999
Q ss_pred eecCcccccceeeeecceeeEE--EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccc
Q 047728 336 WERELNLSHGGVLRGHKLAILC--LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREK 413 (474)
Q Consensus 336 ~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 413 (474)
||++...... .+..|...+.+ +.+++.++++++.|+.|++||+.+++ ....+..|...|.+++|++++.
T Consensus 204 ~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~------ 274 (289)
T cd00200 204 WDLSTGKCLG-TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE--CVQTLSGHTNSVTSLAWSPDGK------ 274 (289)
T ss_pred EECCCCceec-chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce--eEEEccccCCcEEEEEECCCCC------
Confidence 9998765443 33355555544 45567888888889999999998776 4566778999999999999988
Q ss_pred eEEEEEecCCCcEEEEE
Q 047728 414 RWILYSGSLDKSVKMWR 430 (474)
Q Consensus 414 ~~~l~s~s~Dg~i~vw~ 430 (474)
+|++++.||.|++|+
T Consensus 275 --~l~~~~~d~~i~iw~ 289 (289)
T cd00200 275 --RLASGSADGTIRIWD 289 (289)
T ss_pred --EEEEecCCCeEEecC
Confidence 899999999999996
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=229.64 Aligned_cols=280 Identities=20% Similarity=0.318 Sum_probs=235.2
Q ss_pred cceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEE
Q 047728 99 PNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRV 172 (474)
Q Consensus 99 ~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~v 172 (474)
|...+..|..|+++|.++.++ |+|.+|++.|.+|++|+.. ..++++.+|...|..++.. +..+++|+.|..+.+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence 345667889999999999998 9999999999999999944 6788999999999988876 779999999999999
Q ss_pred EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC-
Q 047728 173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD- 251 (474)
Q Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~- 251 (474)
||+++++... .|.+|...|+.+.|+.+...+++|+.|.++++||.++
T Consensus 86 wDV~TGkv~R--------------------------------r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~ 133 (307)
T KOG0316|consen 86 WDVNTGKVDR--------------------------------RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR 133 (307)
T ss_pred EEcccCeeee--------------------------------ecccccceeeEEEecCcceEEEeccccceeEEEEcccC
Confidence 9999997653 4567999999999999999999999999999999875
Q ss_pred -cceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC
Q 047728 252 -YKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD 330 (474)
Q Consensus 252 -~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 330 (474)
.++++.+....+.|.++.... ..+++|+.||+++.||++.+.. ...-...+|++++|+++++..++++.|
T Consensus 134 s~ePiQildea~D~V~Si~v~~-heIvaGS~DGtvRtydiR~G~l--------~sDy~g~pit~vs~s~d~nc~La~~l~ 204 (307)
T KOG0316|consen 134 SFEPIQILDEAKDGVSSIDVAE-HEIVAGSVDGTVRTYDIRKGTL--------SSDYFGHPITSVSFSKDGNCSLASSLD 204 (307)
T ss_pred CCCccchhhhhcCceeEEEecc-cEEEeeccCCcEEEEEeeccee--------ehhhcCCcceeEEecCCCCEEEEeecc
Confidence 567888888889999998863 3899999999999999997643 223345689999999999999999999
Q ss_pred CcEEEeecCcccccceeeeecceee----EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccc-eEEEEEeeC
Q 047728 331 GLVNFWERELNLSHGGVLRGHKLAI----LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGP-VKCLAVEKD 405 (474)
Q Consensus 331 g~i~v~d~~~~~~~~~~~~~~~~~v----~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~-v~~l~~~~~ 405 (474)
+++++.|-++++.+ ....+|...- .|+......+++|++||.|.+||+.... .+..+..+... |++++++|.
T Consensus 205 stlrLlDk~tGklL-~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~--~~sk~~~~~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 205 STLRLLDKETGKLL-KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET--QISKLSVVSTVIVTDLSCHPT 281 (307)
T ss_pred ceeeecccchhHHH-HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce--eeeeeccCCceeEEeeecccC
Confidence 99999999998766 5566776544 4555568899999999999999998877 45677777777 899999999
Q ss_pred CccccccceEEEEEecCCCcEEEEEc
Q 047728 406 DESLSREKRWILYSGSLDKSVKMWRV 431 (474)
Q Consensus 406 ~~~~~~~~~~~l~s~s~Dg~i~vw~~ 431 (474)
.. -|+++.. +.+..|.-
T Consensus 282 ~~--------~f~~A~~-~~~~~~~~ 298 (307)
T KOG0316|consen 282 MD--------DFITATG-HGDLFWYQ 298 (307)
T ss_pred cc--------ceeEecC-Cceeceee
Confidence 87 4666543 44666643
No 34
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.3e-33 Score=266.94 Aligned_cols=271 Identities=23% Similarity=0.364 Sum_probs=226.8
Q ss_pred CcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc---------------------------------ccc
Q 047728 98 SPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR---------------------------------EFS 142 (474)
Q Consensus 98 ~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~---------------------------------~~~ 142 (474)
.|..+.-++..-...+.|..++ +.+||.|-.|..|++|.... ...
T Consensus 366 lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 366 LPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred CCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence 4555666666666678887776 67999999999999996320 123
Q ss_pred ccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc
Q 047728 143 GFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF 220 (474)
Q Consensus 143 ~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 220 (474)
.+.+|.++|..+.|+ .++|++++.|+++|+|.+++..+.. .+.+|.
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V--------------------------------~y~GH~ 493 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV--------------------------------IYKGHL 493 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE--------------------------------EecCCC
Confidence 467999999999998 5699999999999999999886653 456799
Q ss_pred CCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceee
Q 047728 221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKH 299 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~ 299 (474)
.+|+++.|+|.|-++|+++.|++-++|......+++.+.+|-..|.|+.|+|+. ++++|+.|.+||+||..++..
T Consensus 494 ~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~---- 569 (707)
T KOG0263|consen 494 APVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS---- 569 (707)
T ss_pred cceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE----
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999987764
Q ss_pred eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEE
Q 047728 300 FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIW 377 (474)
Q Consensus 300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iw 377 (474)
...+.+|.++|.+++|+|+|++|++|+.||.|.+||+.++..+ ..+.+|...+.++ +.+|..|++|+.|.+|++|
T Consensus 570 --VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v-~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lW 646 (707)
T KOG0263|consen 570 --VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV-KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLW 646 (707)
T ss_pred --EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch-hhhhcccCceeEEEEecCCCEEEecCCCCeEEEE
Confidence 6777899999999999999999999999999999999988665 4566788777554 5589999999999999999
Q ss_pred ECCCCceE----------------------EEEeecCCccceEEEEEeeCCc
Q 047728 378 RRKENEHI----------------------CLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 378 d~~~~~~~----------------------~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
|+...... ++..+.....+|.++.|...+.
T Consensus 647 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl 698 (707)
T KOG0263|consen 647 DLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNL 698 (707)
T ss_pred EchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccce
Confidence 98643211 2344444556777777766554
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.7e-32 Score=285.60 Aligned_cols=279 Identities=15% Similarity=0.245 Sum_probs=223.4
Q ss_pred eeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcc----------ccccccCccCEEEEEec---CCEEEEEeCCCe
Q 047728 105 SLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQRE----------FSGFKSNSGLVKAIVIS---NEKIFSGHQDGK 169 (474)
Q Consensus 105 ~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~----------~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~ 169 (474)
.+..|.+.|.+++|+ |++||+|+.|+.|+||+.... ...+ .+...|.+++|+ +.+|++++.||+
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEeCCCe
Confidence 456689999999987 889999999999999986421 1112 234678899986 578999999999
Q ss_pred EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEE
Q 047728 170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWR 248 (474)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd 248 (474)
|++||+.+++... .+.+|...|++++|+| ++.+|++|+.|++|++||
T Consensus 557 v~lWd~~~~~~~~--------------------------------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd 604 (793)
T PLN00181 557 VQVWDVARSQLVT--------------------------------EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWS 604 (793)
T ss_pred EEEEECCCCeEEE--------------------------------EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEE
Confidence 9999998765331 2345999999999997 788999999999999999
Q ss_pred cCCcceeeeeeecCcceeEEEecC-CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE
Q 047728 249 TSDYKCLESVIAHDDAVNSIVAGF-DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC 326 (474)
Q Consensus 249 ~~~~~~~~~~~~~~~~v~~v~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 326 (474)
++++..+..+..+ ..+.++.|.+ ++ .+++|+.||.|++||++.... ......+|...|.++.|. ++.+|++
T Consensus 605 ~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-----~~~~~~~h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 605 INQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-----PLCTMIGHSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred CCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-----cceEecCCCCCEEEEEEe-CCCEEEE
Confidence 9999988888754 6789999964 45 899999999999999985432 234556889999999997 7789999
Q ss_pred EcCCCcEEEeecCccc-----ccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEE-----------
Q 047728 327 GSSDGLVNFWERELNL-----SHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLS----------- 388 (474)
Q Consensus 327 ~~~dg~i~v~d~~~~~-----~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~----------- 388 (474)
++.|+.|++||++... .....+.+|...+ +++++++.+|++|+.|+.|++|+..........
T Consensus 678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~ 757 (793)
T PLN00181 678 SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL 757 (793)
T ss_pred EECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccccc
Confidence 9999999999997531 2234556676544 667778999999999999999998655422111
Q ss_pred eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728 389 MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431 (474)
Q Consensus 389 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~ 431 (474)
....|...|.+++|++++. +|++|+.||.|+||++
T Consensus 758 ~~~~~~~~V~~v~ws~~~~--------~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 758 EVDDASQFISSVCWRGQSS--------TLVAANSTGNIKILEM 792 (793)
T ss_pred ccCCCCcEEEEEEEcCCCC--------eEEEecCCCcEEEEec
Confidence 1234556799999999998 8999999999999996
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=253.67 Aligned_cols=268 Identities=24% Similarity=0.383 Sum_probs=223.9
Q ss_pred ccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728 148 SGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS 225 (474)
Q Consensus 148 ~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 225 (474)
...|..|.|. |+.|++|+..|.+.+|+...-... .+++.|..+|++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE--------------------------------tilQaHDs~Vr~ 143 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE--------------------------------TILQAHDSPVRT 143 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHH--------------------------------HHhhhhccccee
Confidence 4578889997 679999999999999997432211 234569999999
Q ss_pred EEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecC-cceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeee
Q 047728 226 LSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQ 303 (474)
Q Consensus 226 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 303 (474)
+.|++++.++++|..+|.|++|+..- ..+..+.+|. ..|++++|+|+. .+++++.||+|+|||...... ..
T Consensus 144 m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke------e~ 216 (464)
T KOG0284|consen 144 MKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE------ER 216 (464)
T ss_pred EEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch------hh
Confidence 99999999999999999999999754 4445555554 899999999987 999999999999999986654 45
Q ss_pred eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCC
Q 047728 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKE 381 (474)
Q Consensus 304 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~ 381 (474)
.+.+|.-.|.+++|+|...+|++++.|..|++||.+++.++ ..+..|+..|+.+.+ ++++|++++.|..+++||+++
T Consensus 217 vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl-~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 217 VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL-ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred eeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh-hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence 56899999999999999999999999999999999999877 466789888876654 689999999999999999996
Q ss_pred CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728 382 NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP 461 (474)
Q Consensus 382 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p 461 (474)
.+ .+..+.+|...|+++.|+|-... +|.+|+.||.|..|.+...++.. ..-.+|...|.+++|+|
T Consensus 296 mk--El~~~r~Hkkdv~~~~WhP~~~~-------lftsgg~Dgsvvh~~v~~~~p~~------~i~~AHd~~iwsl~~hP 360 (464)
T KOG0284|consen 296 MK--ELFTYRGHKKDVTSLTWHPLNES-------LFTSGGSDGSVVHWVVGLEEPLG------EIPPAHDGEIWSLAYHP 360 (464)
T ss_pred hH--HHHHhhcchhhheeecccccccc-------ceeeccCCCceEEEecccccccc------CCCcccccceeeeeccc
Confidence 55 46789999999999999998876 89999999999999998443322 22346889999996666
Q ss_pred CCCcCCceeeccC
Q 047728 462 SFSSQGRICQKRS 474 (474)
Q Consensus 462 ~~s~Dg~~l~~~s 474 (474)
- |.+|.++|
T Consensus 361 l----Ghil~tgs 369 (464)
T KOG0284|consen 361 L----GHILATGS 369 (464)
T ss_pred c----ceeEeecC
Confidence 4 77776664
No 37
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=237.04 Aligned_cols=271 Identities=23% Similarity=0.342 Sum_probs=228.3
Q ss_pred CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccc
Q 047728 137 NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNG 214 (474)
Q Consensus 137 ~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (474)
...+...+.+|.+.|..+.|+ +..|++|+.|..|.+|++....... .
T Consensus 36 l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-------------------------------~ 84 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-------------------------------W 84 (338)
T ss_pred ccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce-------------------------------e
Confidence 345566788999999999998 6799999999999999976543221 2
Q ss_pred eeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEccc
Q 047728 215 LWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRREL 292 (474)
Q Consensus 215 ~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~ 292 (474)
++.+|.++|..+.|.+|++.|++++.|.+|+.||+++|+++..++.|...|+.+.-..-| ++.+++.|+++++||++.
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 345699999999999999999999999999999999999999999999999999865556 788999999999999995
Q ss_pred CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeC
Q 047728 293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSA 370 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~ 370 (474)
... .........++++.|..++..+.+|+-|+.|++||++.+... .++.+|..+|+.+ +++|.++.+-+.
T Consensus 165 k~~-------~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~-~~lsGh~DtIt~lsls~~gs~llsnsM 236 (338)
T KOG0265|consen 165 KEA-------IKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL-YTLSGHADTITGLSLSRYGSFLLSNSM 236 (338)
T ss_pred cch-------hhccccceeEEEEEecccccceeeccccCceeeeccccCcce-EEeecccCceeeEEeccCCCccccccc
Confidence 542 233344567999999999999999999999999999877654 6788999888554 578999999999
Q ss_pred CCcEEEEECCCC--ceEEEEeecCCcc----ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCccc
Q 047728 371 DMSICIWRRKEN--EHICLSMLTGHSG----PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQ 444 (474)
Q Consensus 371 dg~i~iwd~~~~--~~~~~~~~~~h~~----~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~ 444 (474)
|.++++||++.. ...++..+.+|.. ....++|+|++. .+..|+.|..+.+||.... ...
T Consensus 237 d~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~--------~i~ags~dr~vyvwd~~~r-------~~l 301 (338)
T KOG0265|consen 237 DNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT--------KITAGSADRFVYVWDTTSR-------RIL 301 (338)
T ss_pred cceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCC--------ccccccccceEEEeecccc-------cEE
Confidence 999999999743 2234666666543 356789999999 8999999999999998775 677
Q ss_pred ccccCCCCCCCccccCC
Q 047728 445 HPLEGHGVAPNSLPYAP 461 (474)
Q Consensus 445 ~~~~~~~~~v~~l~~~p 461 (474)
..++||.+.|+.+.|+|
T Consensus 302 yklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 302 YKLPGHYGSVNEVDFHP 318 (338)
T ss_pred EEcCCcceeEEEeeecC
Confidence 88999999999997666
No 38
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.1e-32 Score=244.45 Aligned_cols=326 Identities=18% Similarity=0.254 Sum_probs=260.8
Q ss_pred cceeeeeeeeecCcEEEEEEc--CCEEEEeeCC----CcEEEEeCCccccccccCccCEEEEEec---CCEEEEEeCCCe
Q 047728 99 PNVLIGSLVREEGHIYSLAAA--GDLLYTGSDS----KNIRVWKNQREFSGFKSNSGLVKAIVIS---NEKIFSGHQDGK 169 (474)
Q Consensus 99 ~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~d----g~v~vwd~~~~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~ 169 (474)
...+..+++--.|+|..++++ ++.|++.++. |.+.+||.+..+-.+.+|...|+++.|. +=+++||+.|++
T Consensus 92 ~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~ 171 (603)
T KOG0318|consen 92 EHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNT 171 (603)
T ss_pred ceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCe
Confidence 345666777788999999987 5566555442 3478899999999999999999999998 448999999999
Q ss_pred EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728 170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT 249 (474)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~ 249 (474)
|.+|+=..-+.. ..+..|..-|.|+.|+|||.++++++.||+|.+||-
T Consensus 172 v~ffeGPPFKFk--------------------------------~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDG 219 (603)
T KOG0318|consen 172 VAFFEGPPFKFK--------------------------------SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDG 219 (603)
T ss_pred EEEeeCCCeeee--------------------------------ecccccccceeeEEECCCCCeEEEecCCccEEEEcC
Confidence 999975443221 123449999999999999999999999999999999
Q ss_pred CCcceeeeee---ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceee--------------------------
Q 047728 250 SDYKCLESVI---AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKH-------------------------- 299 (474)
Q Consensus 250 ~~~~~~~~~~---~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~-------------------------- 299 (474)
.+++.+..+. +|++.|.++.|+||+ .+++++.|.+++|||+.........
T Consensus 220 ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~ 299 (603)
T KOG0318|consen 220 KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLS 299 (603)
T ss_pred CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcC
Confidence 9999999997 899999999999999 9999999999999998643211100
Q ss_pred -----------eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecC-CEEEE
Q 047728 300 -----------FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAG-NLVFS 367 (474)
Q Consensus 300 -----------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s 367 (474)
.......+|...|++++.++++++|++|+.||.|.-||...+..-...-.+|...|.++...+ ..+++
T Consensus 300 G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t 379 (603)
T KOG0318|consen 300 GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT 379 (603)
T ss_pred cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence 023445688999999999999999999999999999999988766545578999999998876 88999
Q ss_pred EeCCCcEEEEECCCCc------------eEEE-----------------EeecCCc--------cceEEEEEeeCCcccc
Q 047728 368 GSADMSICIWRRKENE------------HICL-----------------SMLTGHS--------GPVKCLAVEKDDESLS 410 (474)
Q Consensus 368 gs~dg~i~iwd~~~~~------------~~~~-----------------~~~~~h~--------~~v~~l~~~~~~~~~~ 410 (474)
.+.|.++++.++.... +..+ ..+..+. -...+++++|++.
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~--- 456 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS--- 456 (603)
T ss_pred EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC---
Confidence 9999999999774221 1111 1111121 2457899999998
Q ss_pred ccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728 411 REKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 411 ~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
.++.|+.|+.|+||.+..... .....+..|.++|+.+ +|||||.+|+.+
T Consensus 457 -----~vaVGG~Dgkvhvysl~g~~l-----~ee~~~~~h~a~iT~v----aySpd~~yla~~ 505 (603)
T KOG0318|consen 457 -----EVAVGGQDGKVHVYSLSGDEL-----KEEAKLLEHRAAITDV----AYSPDGAYLAAG 505 (603)
T ss_pred -----EEEEecccceEEEEEecCCcc-----cceeeeecccCCceEE----EECCCCcEEEEe
Confidence 899999999999999987643 2233456799999999 899999999764
No 39
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=257.85 Aligned_cols=277 Identities=21% Similarity=0.357 Sum_probs=234.4
Q ss_pred CcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCC-CeEEEEecCCCCccee
Q 047728 111 GHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQD-GKIRVWKVSSKDASIH 183 (474)
Q Consensus 111 ~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d-g~i~vwd~~~~~~~~~ 183 (474)
..|+|.++. -++||+|=..|...+|+.. ..+..+.-....|..++|+ |+.|+.|+.. |.+-||++.+...+..
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK 345 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK 345 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee
Confidence 678888888 5589999999999999865 4566666667889999998 9999988755 8999999988765432
Q ss_pred eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCc
Q 047728 184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD 263 (474)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 263 (474)
.++|...+++++++|||+++++|++||.|+|||..++-|+.++..|..
T Consensus 346 --------------------------------QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts 393 (893)
T KOG0291|consen 346 --------------------------------QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS 393 (893)
T ss_pred --------------------------------ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC
Confidence 246999999999999999999999999999999999999999999999
Q ss_pred ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-cEEEeecCcc
Q 047728 264 AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-LVNFWERELN 341 (474)
Q Consensus 264 ~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-~i~v~d~~~~ 341 (474)
.|+.+.|+..+ .+++.+-||+|+.||+..... .............|++.+|.|.++.+|+.|. .|.+|+++++
T Consensus 394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-----fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-----FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred ceEEEEEEecCCEEEEeecCCeEEeeeecccce-----eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence 99999999999 899999999999999875443 2222233445578999999999999999887 4999999999
Q ss_pred cccceeeeecceeeEE--EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEE
Q 047728 342 LSHGGVLRGHKLAILC--LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS 419 (474)
Q Consensus 342 ~~~~~~~~~~~~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s 419 (474)
+.+ .++.+|.++|.+ |+|.+..|++|+.|.+|++||+-..... ..++ .+...+.+++|.|+|+ -|++
T Consensus 469 qll-DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-vEtl-~i~sdvl~vsfrPdG~--------elaV 537 (893)
T KOG0291|consen 469 QLL-DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-VETL-EIRSDVLAVSFRPDGK--------ELAV 537 (893)
T ss_pred eee-ehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-eeeE-eeccceeEEEEcCCCC--------eEEE
Confidence 765 788999999975 7778999999999999999999655321 2333 3667899999999999 8999
Q ss_pred ecCCCcEEEEEccCCC
Q 047728 420 GSLDKSVKMWRVSEQA 435 (474)
Q Consensus 420 ~s~Dg~i~vw~~~~~~ 435 (474)
+..||.|.+||+....
T Consensus 538 aTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 538 ATLDGQITFFDIKEAV 553 (893)
T ss_pred EEecceEEEEEhhhce
Confidence 9999999999998753
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-33 Score=242.67 Aligned_cols=249 Identities=24% Similarity=0.420 Sum_probs=220.3
Q ss_pred ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728 139 REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW 216 (474)
Q Consensus 139 ~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (474)
+....+.+|.+.|.|++++ ++.+++|+.|++|+|||+.+++... .+
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl--------------------------------tl 189 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL--------------------------------TL 189 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE--------------------------------ee
Confidence 4456788999999999998 6799999999999999999997653 44
Q ss_pred eeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC
Q 047728 217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK 295 (474)
Q Consensus 217 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~ 295 (474)
.+|...|..+++++-..+|++++.|+.|+.||++..+.++.+.+|-..|.|++.+|.- .|++|+.|.++++||+++...
T Consensus 190 tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 190 TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred cchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce
Confidence 5699999999999999999999999999999999999999999999999999999987 999999999999999997664
Q ss_pred ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCc
Q 047728 296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMS 373 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~ 373 (474)
...+.+|..+|..+.+.|-...+++|+.|++|++||++.++.. ..+..|+..+. ++.|....+++++.| .
T Consensus 270 ------V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~-~tlt~hkksvral~lhP~e~~fASas~d-n 341 (460)
T KOG0285|consen 270 ------VHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM-ITLTHHKKSVRALCLHPKENLFASASPD-N 341 (460)
T ss_pred ------EEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee-EeeecccceeeEEecCCchhhhhccCCc-c
Confidence 6788899999999999998999999999999999999988766 34556776664 555677888888877 5
Q ss_pred EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCC
Q 047728 374 ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL 438 (474)
Q Consensus 374 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~ 438 (474)
|+-|++..+. .+..+.+|...|++++...|+ ++++|++.|.+.+||.+++-..+
T Consensus 342 ik~w~~p~g~--f~~nlsgh~~iintl~~nsD~---------v~~~G~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 342 IKQWKLPEGE--FLQNLSGHNAIINTLSVNSDG---------VLVSGGDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred ceeccCCccc--hhhccccccceeeeeeeccCc---------eEEEcCCceEEEEEecCcCcccc
Confidence 9999998887 456699999999999999987 79999999999999999885443
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.9e-32 Score=224.94 Aligned_cols=275 Identities=21% Similarity=0.327 Sum_probs=224.7
Q ss_pred ccccccCccCEEEEEecCC---EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 141 FSGFKSNSGLVKAIVISNE---KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 141 ~~~~~~h~~~V~~i~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
+..+++|.+.|..++|++. .|++|+.|..||+|+...+.....+.+ +-.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~v----------------------------ld~ 58 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTV----------------------------LDD 58 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEe----------------------------ccc
Confidence 4567889999999999944 799999999999999985332211111 112
Q ss_pred eccCCeeEEEecCCCCEEEEEECCCcEEEEEcC--CcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCC
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS--DYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQG 294 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~ 294 (474)
+|+..|++++|+|.|++|++|+.|.++.||.-. +.+++..+.+|...|.+++|+++| +|++++.|..|-||.+....
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd 138 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD 138 (312)
T ss_pred cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence 499999999999999999999999999999755 357899999999999999999999 99999999999999987332
Q ss_pred CceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC--cccccceeeeecceeeEEEEe--cCCEEEEEeC
Q 047728 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE--LNLSHGGVLRGHKLAILCLVT--AGNLVFSGSA 370 (474)
Q Consensus 295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~--~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~ 370 (474)
...+...+..|...|..+.|+|...+|++++.|.+|++|+-. ......+.+.+|...+.++.+ .|..|++++.
T Consensus 139 ---Efec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd 215 (312)
T KOG0645|consen 139 ---EFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD 215 (312)
T ss_pred ---cEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC
Confidence 344677889999999999999999999999999999999765 334556778889877766654 5899999999
Q ss_pred CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCC
Q 047728 371 DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH 450 (474)
Q Consensus 371 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 450 (474)
|++++||..... ....|..++..+.|. ++ .|++++.|+.|++|.-......+...........|
T Consensus 216 D~tv~Iw~~~~~------~~~~~sr~~Y~v~W~-~~---------~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH 279 (312)
T KOG0645|consen 216 DGTVSIWRLYTD------LSGMHSRALYDVPWD-NG---------VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH 279 (312)
T ss_pred CcceEeeeeccC------cchhcccceEeeeec-cc---------ceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc
Confidence 999999986532 123477899999999 44 79999999999999987654434343444566679
Q ss_pred CCCCCccccCCC
Q 047728 451 GVAPNSLPYAPS 462 (474)
Q Consensus 451 ~~~v~~l~~~p~ 462 (474)
...|+++.|+|.
T Consensus 280 e~dVNsV~w~p~ 291 (312)
T KOG0645|consen 280 EVDVNSVQWNPK 291 (312)
T ss_pred ccccceEEEcCC
Confidence 999999999983
No 42
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=237.58 Aligned_cols=289 Identities=16% Similarity=0.212 Sum_probs=234.0
Q ss_pred ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728 100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW 173 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw 173 (474)
......+.+|+..|.|+.|+ |.|||||..+|.|+||+.. .....+...-..|.-+.|+ ...|+.|+.||.+.+|
T Consensus 96 ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw 175 (399)
T KOG0296|consen 96 GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMW 175 (399)
T ss_pred CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEE
Confidence 45788899999999999887 8899999999999999854 3444444456667788888 6689999999999999
Q ss_pred ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc
Q 047728 174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK 253 (474)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 253 (474)
.+.++... .++.+|..++++=.|.|+|++++++..||+|++||..+++
T Consensus 176 ~ip~~~~~--------------------------------kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 176 QIPSQALC--------------------------------KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred ECCCccee--------------------------------eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc
Confidence 99885321 3567799999999999999999999999999999999999
Q ss_pred eeeeeeec-CcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeee--eeeeeecccccEEEEE---EcCCCCEEEE
Q 047728 254 CLESVIAH-DDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHF--FSQTLLKQECAVTALA---ISPDAAIVYC 326 (474)
Q Consensus 254 ~~~~~~~~-~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~l~---~~~~~~~l~~ 326 (474)
++..+... .....++.++..+ .++.|+.++.+++-+...++...... .......++..+.++. ++..-.+.|+
T Consensus 224 p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~ 303 (399)
T KOG0296|consen 224 PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAAC 303 (399)
T ss_pred eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhc
Confidence 99888642 3456788888887 88889999988888755433211111 1112223444444444 4556678999
Q ss_pred EcCCCcEEEeecCcccccceeeeecceeeEEEEecC-CEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728 327 GSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAG-NLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405 (474)
Q Consensus 327 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~ 405 (474)
|+.||+|.|||+..... +....|...|+.+.+.+ .+|++++.+|.|+.||.++++ ++..+.+|..+|.+++++|+
T Consensus 304 G~vdG~i~iyD~a~~~~--R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~--l~~~y~GH~~~Il~f~ls~~ 379 (399)
T KOG0296|consen 304 GSVDGTIAIYDLAASTL--RHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQ--LKFTYTGHQMGILDFALSPQ 379 (399)
T ss_pred ccccceEEEEecccchh--heeccCCCceEEEEEcCcchheeeccCceEEeeeccccc--eEEEEecCchheeEEEEcCC
Confidence 99999999999986643 45567888899988876 899999999999999999999 67899999999999999999
Q ss_pred CccccccceEEEEEecCCCcEEEEEcc
Q 047728 406 DESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 406 ~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
.+ +++|+|.|++.+||++.
T Consensus 380 ~~--------~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 380 KR--------LVVTVSDDNTALVFEVP 398 (399)
T ss_pred Cc--------EEEEecCCCeEEEEecC
Confidence 99 99999999999999875
No 43
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-32 Score=226.48 Aligned_cols=284 Identities=16% Similarity=0.254 Sum_probs=237.2
Q ss_pred eeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCC
Q 047728 105 SLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSK 178 (474)
Q Consensus 105 ~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~ 178 (474)
-|++|+.+++.+.++ |++|.+++.|.++.||- .++.+-++.+|.++|.|+..+ .++++||+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 367899999999998 99999999999999995 567889999999999999987 679999999999999999999
Q ss_pred CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-----CCcEEEEEcC---
Q 047728 179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-----DKTFKVWRTS--- 250 (474)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----dg~i~iwd~~--- 250 (474)
+++.... -..+|..+.|++++++++...+ .+.|.++|++
T Consensus 85 k~la~~k---------------------------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 85 KQLATWK---------------------------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred cEEEEee---------------------------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 8765443 4558999999999998887764 3679999998
Q ss_pred ----CcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728 251 ----DYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY 325 (474)
Q Consensus 251 ----~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 325 (474)
..+++..+..+...++...|.|-+ .|++|..||.|.+||++++.. .......|...|+.++++++..+++
T Consensus 132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~-----~v~s~~~h~~~Ind~q~s~d~T~Fi 206 (327)
T KOG0643|consen 132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE-----LVDSDEEHSSKINDLQFSRDRTYFI 206 (327)
T ss_pred hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce-----eeechhhhccccccccccCCcceEE
Confidence 455677888888999999999998 999999999999999997654 4566678888999999999999999
Q ss_pred EEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEE--CCCCce----------EEEEeecCC
Q 047728 326 CGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWR--RKENEH----------ICLSMLTGH 393 (474)
Q Consensus 326 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd--~~~~~~----------~~~~~~~~h 393 (474)
+++.|.+-++||.++-..+............+++|..+.++.|+.....-+=- .+.++. ..+...++|
T Consensus 207 T~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH 286 (327)
T KOG0643|consen 207 TGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH 286 (327)
T ss_pred ecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc
Confidence 99999999999999887777776667777788888777777766433222221 122211 024567899
Q ss_pred ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 394 SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 394 ~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
-++|++++|+|+|+ ..++|++||.|++..+...
T Consensus 287 FGPINsvAfhPdGk--------sYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 287 FGPINSVAFHPDGK--------SYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ccCcceeEECCCCc--------ccccCCCCceEEEEEeccc
Confidence 99999999999999 7999999999999977653
No 44
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-32 Score=224.91 Aligned_cols=267 Identities=20% Similarity=0.297 Sum_probs=228.3
Q ss_pred cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 140 EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 140 ~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
....+..+.++|.++.|+ |++.++++.|.+|++|+.-.+.++ ..+.
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li--------------------------------ktYs 56 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI--------------------------------KTYS 56 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccccee--------------------------------eeec
Confidence 456678899999999998 889999999999999998877654 3566
Q ss_pred eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
+|..+|..++.+.|+..|++|+.|..|.+||+.+|+.++.+.+|...|+.+.|+.+. .+++|+.|..+++||-+.....
T Consensus 57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE 136 (307)
T ss_pred CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC
Confidence 799999999999999999999999999999999999999999999999999999888 9999999999999998865432
Q ss_pred eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEE
Q 047728 297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICI 376 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~i 376 (474)
+.+.+......|.++.+. +..|++|+.||+++.||++.+... .-..+|....++++++++..++++.|+++++
T Consensus 137 ----PiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~-sDy~g~pit~vs~s~d~nc~La~~l~stlrL 209 (307)
T KOG0316|consen 137 ----PIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLS-SDYFGHPITSVSFSKDGNCSLASSLDSTLRL 209 (307)
T ss_pred ----ccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceee-hhhcCCcceeEEecCCCCEEEEeeccceeee
Confidence 456666677788888775 678999999999999999988654 3455888899999999999999999999999
Q ss_pred EECCCCceEEEEeecCCccceE--EEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCC-
Q 047728 377 WRRKENEHICLSMLTGHSGPVK--CLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVA- 453 (474)
Q Consensus 377 wd~~~~~~~~~~~~~~h~~~v~--~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~- 453 (474)
.|-.+++ .+...++|...-. ..++..... .+++|++||.|.+||+.+. .....+..+...
T Consensus 210 lDk~tGk--lL~sYkGhkn~eykldc~l~qsdt--------hV~sgSEDG~Vy~wdLvd~-------~~~sk~~~~~~v~ 272 (307)
T KOG0316|consen 210 LDKETGK--LLKSYKGHKNMEYKLDCCLNQSDT--------HVFSGSEDGKVYFWDLVDE-------TQISKLSVVSTVI 272 (307)
T ss_pred cccchhH--HHHHhcccccceeeeeeeecccce--------eEEeccCCceEEEEEeccc-------eeeeeeccCCcee
Confidence 9999998 5678888877543 445555555 8999999999999999887 455556666666
Q ss_pred CCccccCCC
Q 047728 454 PNSLPYAPS 462 (474)
Q Consensus 454 v~~l~~~p~ 462 (474)
+.++.++|.
T Consensus 273 v~dl~~hp~ 281 (307)
T KOG0316|consen 273 VTDLSCHPT 281 (307)
T ss_pred EEeeecccC
Confidence 788888885
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-32 Score=253.58 Aligned_cols=245 Identities=24% Similarity=0.371 Sum_probs=220.8
Q ss_pred cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728 142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH 219 (474)
Q Consensus 142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 219 (474)
+.+..++..|.++.++ ...++++-.+|.|.||+.++...+..+.+ .
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV--------------------------------~ 54 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV--------------------------------S 54 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee--------------------------------c
Confidence 3455689999999999 56899999999999999999887765554 4
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCcee
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTK 298 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~ 298 (474)
.-+|++..|-...+.+++|++|..|+||+..+++.+..+.+|.+.|++++.+|.. ++++++.|-+|++||.+..
T Consensus 55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~----- 129 (794)
T KOG0276|consen 55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE----- 129 (794)
T ss_pred ccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc-----
Confidence 4578889999989999999999999999999999999999999999999999998 9999999999999998743
Q ss_pred eeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe----cCCEEEEEeCCCc
Q 047728 299 HFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT----AGNLVFSGSADMS 373 (474)
Q Consensus 299 ~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~sgs~dg~ 373 (474)
..+.+.+.+|...|.+++|+| |.+.+++++-|++|++|.+...... ..+.+|...|.|+.. +..+|++|+.|.+
T Consensus 130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n-fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t 208 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN-FTLEGHEKGVNCVDYYTGGDKPYLISGADDLT 208 (794)
T ss_pred eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc-eeeeccccCcceEEeccCCCcceEEecCCCce
Confidence 337889999999999999999 7789999999999999999877654 567799999988886 3459999999999
Q ss_pred EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 374 ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 374 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
|+|||.++.. |+.++.+|...|..+.|+|.-. +++||++||++|||+-.+-
T Consensus 209 iKvWDyQtk~--CV~TLeGHt~Nvs~v~fhp~lp--------iiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 209 IKVWDYQTKS--CVQTLEGHTNNVSFVFFHPELP--------IIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred EEEeecchHH--HHHHhhcccccceEEEecCCCc--------EEEEecCCccEEEecCcce
Confidence 9999999988 8999999999999999999998 9999999999999997764
No 46
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.9e-32 Score=261.76 Aligned_cols=276 Identities=28% Similarity=0.457 Sum_probs=243.9
Q ss_pred ecCcEEEEEEcCCEEEEeeCCCcEEEEeCC--ccccc-cccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCccee
Q 047728 109 EEGHIYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSG-FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIH 183 (474)
Q Consensus 109 h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~-~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~ 183 (474)
|...+.+..+.++++++++.|++|++||.. ..+.. +.+|.+.|.++++. +++|++|+.|.++++||..++++..
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~- 285 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH- 285 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE-
Confidence 456688888999999999999999999944 44444 89999999999999 8999999999999999999998763
Q ss_pred eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCc
Q 047728 184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD 263 (474)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 263 (474)
++.+|...|.++... ...+++|+.|.+|++|++.++.++..+.+|.+
T Consensus 286 -------------------------------~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~ 332 (537)
T KOG0274|consen 286 -------------------------------SLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG 332 (537)
T ss_pred -------------------------------EecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccc
Confidence 456799999999775 45788899999999999999999999999999
Q ss_pred ceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc
Q 047728 264 AVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS 343 (474)
Q Consensus 264 ~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 343 (474)
+|+++... .+.+++|+.|++|++||+...+ +...+.+|...|.++.+.+. ..+++|+.|+.|++||+++...
T Consensus 333 ~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~------cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~ 404 (537)
T KOG0274|consen 333 PVNCVQLD-EPLLVSGSYDGTVKVWDPRTGK------CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRK 404 (537)
T ss_pred cEEEEEec-CCEEEEEecCceEEEEEhhhce------eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhh
Confidence 99999998 5599999999999999998544 68888999999999988876 8999999999999999999844
Q ss_pred cceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC-CccceEEEEEeeCCccccccceEEEEEecC
Q 047728 344 HGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG-HSGPVKCLAVEKDDESLSREKRWILYSGSL 422 (474)
Q Consensus 344 ~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~ 422 (474)
....+.+|...+..+...+++|++++.|++|++||..+++ ++.++.+ |.+.|..+++. .. .+++++.
T Consensus 405 c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~--~~~~~~~~~~~~v~~l~~~--~~--------~il~s~~ 472 (537)
T KOG0274|consen 405 CIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGE--CLRTLEGRHVGGVSALALG--KE--------EILCSSD 472 (537)
T ss_pred hhhhhcCCcccccccccccceeEeccccccEEEeecccCc--eeeeeccCCcccEEEeecC--cc--------eEEEEec
Confidence 4577889999999999999999999999999999999988 6778887 77899999887 23 6899999
Q ss_pred CCcEEEEEccCCCCCC
Q 047728 423 DKSVKMWRVSEQAPPL 438 (474)
Q Consensus 423 Dg~i~vw~~~~~~~~~ 438 (474)
||++++||++.++...
T Consensus 473 ~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 473 DGSVKLWDLRSGTLIR 488 (537)
T ss_pred CCeeEEEecccCchhh
Confidence 9999999999986543
No 47
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=6.7e-33 Score=227.83 Aligned_cols=283 Identities=19% Similarity=0.316 Sum_probs=240.1
Q ss_pred eeeeecCcEEEEEEc-----CCEEEEeeCCCcEEEE--eCCccccccccCccCEEEEEecCC--EEEEEeCCCeEEEEec
Q 047728 105 SLVREEGHIYSLAAA-----GDLLYTGSDSKNIRVW--KNQREFSGFKSNSGLVKAIVISNE--KIFSGHQDGKIRVWKV 175 (474)
Q Consensus 105 ~l~~h~~~i~~~~~~-----~~~l~tgs~dg~v~vw--d~~~~~~~~~~h~~~V~~i~~~~~--~l~s~~~dg~i~vwd~ 175 (474)
+-.+|+.+|..++|+ |-+|++++.||.-.+- |++.-+-+|.+|.++|.....+.+ +.++++.|=+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 457899999998876 6699999999987666 477889999999999999999844 6788999999999999
Q ss_pred CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc-e
Q 047728 176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK-C 254 (474)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-~ 254 (474)
-++..+..+. |..-|.+++|+.|.++|++|+.+..++|||++..+ +
T Consensus 89 ~tgdelhsf~---------------------------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap 135 (334)
T KOG0278|consen 89 VTGDELHSFE---------------------------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP 135 (334)
T ss_pred hhhhhhhhhh---------------------------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCC
Confidence 9887654332 88899999999999999999999999999998654 5
Q ss_pred eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728 255 LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV 333 (474)
Q Consensus 255 ~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 333 (474)
...+.+|.+.|..+.|.... .+++.+.|++||+||.+++.. ........+|+++.++++|++|.++ ..+.|
T Consensus 136 p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~-------v~sL~~~s~VtSlEvs~dG~ilTia-~gssV 207 (334)
T KOG0278|consen 136 PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE-------VQSLEFNSPVTSLEVSQDGRILTIA-YGSSV 207 (334)
T ss_pred chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE-------EEEEecCCCCcceeeccCCCEEEEe-cCcee
Confidence 67788999999999887666 888889999999999997764 2233456789999999999988765 55789
Q ss_pred EEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccc
Q 047728 334 NFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREK 413 (474)
Q Consensus 334 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 413 (474)
.+||..+-..+.....+......++.|+...+++|++|..++.||..+++.+-. ..++|.++|.|+.|+|++.
T Consensus 208 ~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~-~nkgh~gpVhcVrFSPdGE------ 280 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS-YNKGHFGPVHCVRFSPDGE------ 280 (334)
T ss_pred EEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee-cccCCCCceEEEEECCCCc------
Confidence 999998877666665566677788999999999999999999999999985422 2489999999999999999
Q ss_pred eEEEEEecCCCcEEEEEccCCCCC
Q 047728 414 RWILYSGSLDKSVKMWRVSEQAPP 437 (474)
Q Consensus 414 ~~~l~s~s~Dg~i~vw~~~~~~~~ 437 (474)
+.++||.||+|+||.+..++..
T Consensus 281 --~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 281 --LYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred --eeeccCCCceEEEEEecCCCch
Confidence 8999999999999999877554
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-31 Score=257.88 Aligned_cols=262 Identities=28% Similarity=0.467 Sum_probs=218.6
Q ss_pred CccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728 147 NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS 224 (474)
Q Consensus 147 h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 224 (474)
+...|.++.|+ ++.+++++.|+.+++|+........ ...+.+|...|.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~------------------------------~~~l~~h~~~v~ 207 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNL------------------------------LRELSGHTRGVS 207 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchh------------------------------hcccccccccee
Confidence 47789999998 7799999999999999996554200 012245999999
Q ss_pred EEEecCCCCEEEEEECCCcEEEEEc-CCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728 225 SLSMSEDQNLLYSASWDKTFKVWRT-SDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS 302 (474)
Q Consensus 225 ~l~~~~~~~~l~s~s~dg~i~iwd~-~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 302 (474)
+++|+|+++++++++.|++|+|||+ ..+..++++.+|...|++++|+|++ ++++|+.|++|+|||++... +.
T Consensus 208 ~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~------~~ 281 (456)
T KOG0266|consen 208 DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE------CV 281 (456)
T ss_pred eeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe------EE
Confidence 9999999999999999999999999 5568999999999999999999999 99999999999999998743 57
Q ss_pred eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc-ceeeeecc----eeeEEEEecCCEEEEEeCCCcEEEE
Q 047728 303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH-GGVLRGHK----LAILCLVTAGNLVFSGSADMSICIW 377 (474)
Q Consensus 303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~----~~v~~~~~~~~~l~sgs~dg~i~iw 377 (474)
..+..|...|++++|++++++|++++.|+.|++||+.++... ...+.++. ....++++++.+++++..|+.+++|
T Consensus 282 ~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w 361 (456)
T KOG0266|consen 282 RKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLW 361 (456)
T ss_pred EeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEE
Confidence 889999999999999999999999999999999999988732 12222222 3456777899999999999999999
Q ss_pred ECCCCceEEEEeecCCccce---EEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCC-CCC
Q 047728 378 RRKENEHICLSMLTGHSGPV---KCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH-GVA 453 (474)
Q Consensus 378 d~~~~~~~~~~~~~~h~~~v---~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~-~~~ 453 (474)
|+.... +...+.+|...+ .+...++.+. ++++|+.|+.|++|++.++ .....+.+| ...
T Consensus 362 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------~i~sg~~d~~v~~~~~~s~-------~~~~~l~~h~~~~ 424 (456)
T KOG0266|consen 362 DLRSGK--SVGTYTGHSNLVRCIFSPTLSTGGK--------LIYSGSEDGSVYVWDSSSG-------GILQRLEGHSKAA 424 (456)
T ss_pred EccCCc--ceeeecccCCcceeEecccccCCCC--------eEEEEeCCceEEEEeCCcc-------chhhhhcCCCCCc
Confidence 999887 566777787753 3444566777 9999999999999999986 456677888 677
Q ss_pred CCccccCC
Q 047728 454 PNSLPYAP 461 (474)
Q Consensus 454 v~~l~~~p 461 (474)
+..+.|+|
T Consensus 425 ~~~~~~~~ 432 (456)
T KOG0266|consen 425 VSDLSSHP 432 (456)
T ss_pred eeccccCC
Confidence 77776665
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.4e-33 Score=246.98 Aligned_cols=272 Identities=19% Similarity=0.282 Sum_probs=234.0
Q ss_pred CCccccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCC-CCcceeeeecccCccceeeeeecCCCCeEEEeeec
Q 047728 137 NQREFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSS-KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHR 212 (474)
Q Consensus 137 ~~~~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (474)
..+.+..+.+|...|+++.|. +.+|++++.|+.|+||++-. +.++
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l------------------------------- 251 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL------------------------------- 251 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee-------------------------------
Confidence 345677889999999999997 56899999999999999976 3332
Q ss_pred cceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEc
Q 047728 213 NGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRR 290 (474)
Q Consensus 213 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~ 290 (474)
.+|.+|..+|.+++|+++|..+++++.|+.|++||+++|+++..+.. ...++|+.|+|++ .+++|+.|+.|+.||+
T Consensus 252 -rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi 329 (503)
T KOG0282|consen 252 -RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI 329 (503)
T ss_pred -hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence 35678999999999999999999999999999999999999998865 6678999999998 8999999999999999
Q ss_pred ccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee--eecceeeEEEEecCCEEEEE
Q 047728 291 ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL--RGHKLAILCLVTAGNLVFSG 368 (474)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~l~sg 368 (474)
+.+. +.+....|-+.|..+.|-++++.+++.+.|+.++||+.+.+..+.... ..|..+.+.+.|+++++++-
T Consensus 330 Rs~k------vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ 403 (503)
T KOG0282|consen 330 RSGK------VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ 403 (503)
T ss_pred cchH------HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh
Confidence 9776 467788889999999999999999999999999999988775554433 45778889999999999999
Q ss_pred eCCCcEEEEECCCCc-eEEEEeecCCc--cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccc
Q 047728 369 SADMSICIWRRKENE-HICLSMLTGHS--GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445 (474)
Q Consensus 369 s~dg~i~iwd~~~~~-~~~~~~~~~h~--~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~ 445 (474)
+.|+.|.+|.+...- ......+.+|. +--..+.|+||+. +|++|+.||.+.+||..+. +...
T Consensus 404 s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~--------~l~SGdsdG~v~~wdwkt~-------kl~~ 468 (503)
T KOG0282|consen 404 SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR--------TLCSGDSDGKVNFWDWKTT-------KLVS 468 (503)
T ss_pred ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC--------eEEeecCCccEEEeechhh-------hhhh
Confidence 999999999875331 11234567775 3456789999999 9999999999999999987 6777
Q ss_pred cccCCCCCCCccccCCC
Q 047728 446 PLEGHGVAPNSLPYAPS 462 (474)
Q Consensus 446 ~~~~~~~~v~~l~~~p~ 462 (474)
.+..|...+..+.|+|-
T Consensus 469 ~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 469 KLKAHDQPCIGVDWHPV 485 (503)
T ss_pred ccccCCcceEEEEecCC
Confidence 88999999999999993
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-31 Score=252.41 Aligned_cols=281 Identities=21% Similarity=0.351 Sum_probs=237.2
Q ss_pred cCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCccee
Q 047728 110 EGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIH 183 (474)
Q Consensus 110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~ 183 (474)
...|..++|. ..+++++-..|.|++|| ....+..|..|.++|..++|+ ...+++|+.|-+|+||+..+.++..
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf- 87 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF- 87 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh-
Confidence 4456666666 56899999999999999 557888999999999999999 5689999999999999999887753
Q ss_pred eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCc
Q 047728 184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD 263 (474)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 263 (474)
.+.+|-+-|..+.|++.-..|+++|+|.+|+||+..+.+++..+.+|..
T Consensus 88 -------------------------------tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH 136 (1202)
T KOG0292|consen 88 -------------------------------TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH 136 (1202)
T ss_pred -------------------------------hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce
Confidence 4567999999999999999999999999999999999999999999999
Q ss_pred ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc-----------------------eeeeeeeeeecccccEEEEEEcC
Q 047728 264 AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG-----------------------TKHFFSQTLLKQECAVTALAISP 319 (474)
Q Consensus 264 ~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~-----------------------~~~~~~~~~~~~~~~v~~l~~~~ 319 (474)
.|.|..|+|.. .+++++-|.+||+||+....+. ........+.+|...|+-++|+|
T Consensus 137 YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 137 YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 99999999966 9999999999999997532110 01234566789999999999999
Q ss_pred CCCEEEEEcCCCcEEEeecCcc-cccceeeeecceeeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccc
Q 047728 320 DAAIVYCGSSDGLVNFWERELN-LSHGGVLRGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGP 396 (474)
Q Consensus 320 ~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~ 396 (474)
.-.+|++|+.|..|++|..... .......++|...|.++-++ .+++++.++|++|+|||+...+ .+.++....+.
T Consensus 217 TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt--~v~tfrrendR 294 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT--SVQTFRRENDR 294 (1202)
T ss_pred CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc--ceeeeeccCCe
Confidence 9999999999999999997643 23345678999888776655 5899999999999999998776 56777767788
Q ss_pred eEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 397 VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 397 v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
.+.++.+|..+ |+.++.|+-+.||.++.
T Consensus 295 FW~laahP~lN---------LfAAgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 295 FWILAAHPELN---------LFAAGHDSGMIVFKLER 322 (1202)
T ss_pred EEEEEecCCcc---------eeeeecCCceEEEEEcc
Confidence 99999999987 44555666677887764
No 51
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.6e-30 Score=236.78 Aligned_cols=273 Identities=27% Similarity=0.464 Sum_probs=222.5
Q ss_pred ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728 141 FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218 (474)
Q Consensus 141 ~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
+..+++|...|.++.|+ +++|++++.||.|++|++.+++... .+..
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~--------------------------------~~~~ 49 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR--------------------------------TLKG 49 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE--------------------------------EEec
Confidence 35677899999999998 4799999999999999998765321 2234
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCce
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 297 (474)
|...+..+.|.+++++|++++.|+.|++||+.+++.+..+..|...+.++.|.+++ .+++++.++.|++||++...
T Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 126 (289)
T cd00200 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK--- 126 (289)
T ss_pred CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE---
Confidence 88889999999999999999999999999999988888898999999999999987 66777779999999997432
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcEE
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSIC 375 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~ 375 (474)
....+..|...+.+++|+|++.++++++.++.|++||++..... ..+..|...+. ++.++++.+++++.|+.|+
T Consensus 127 ---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 202 (289)
T cd00200 127 ---CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV-ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202 (289)
T ss_pred ---EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccc-eeEecCccccceEEECCCcCEEEEecCCCcEE
Confidence 23444578889999999999999998888999999999866554 34446665554 4556777999999999999
Q ss_pred EEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCC
Q 047728 376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPN 455 (474)
Q Consensus 376 iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~ 455 (474)
+||+..++ .+..+..|...+.+++|++++. ++++++.||.|++|++.++ .....+..|...+.
T Consensus 203 i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~i~i~~~~~~-------~~~~~~~~~~~~i~ 265 (289)
T cd00200 203 LWDLSTGK--CLGTLRGHENGVNSVAFSPDGY--------LLASGSEDGTIRVWDLRTG-------ECVQTLSGHTNSVT 265 (289)
T ss_pred EEECCCCc--eecchhhcCCceEEEEEcCCCc--------EEEEEcCCCcEEEEEcCCc-------eeEEEccccCCcEE
Confidence 99998876 4556668889999999999977 8888888999999999875 34445557888888
Q ss_pred ccccCCCCCcCCceeecc
Q 047728 456 SLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 456 ~l~~~p~~s~Dg~~l~~~ 473 (474)
++. |++|+++++++
T Consensus 266 ~~~----~~~~~~~l~~~ 279 (289)
T cd00200 266 SLA----WSPDGKRLASG 279 (289)
T ss_pred EEE----ECCCCCEEEEe
Confidence 884 55566666654
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.2e-30 Score=269.90 Aligned_cols=301 Identities=16% Similarity=0.195 Sum_probs=225.9
Q ss_pred CCcEEEEeCCcc-------ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeee
Q 047728 129 SKNIRVWKNQRE-------FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCS 199 (474)
Q Consensus 129 dg~v~vwd~~~~-------~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (474)
+|.+++|+.... ...+..|...|.+++|+ +++|++|+.|+.|+||++........ ... .
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-~~~-~---------- 524 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-DIH-Y---------- 524 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-ccc-c----------
Confidence 667778864421 12345689999999998 67999999999999999864211000 000 0
Q ss_pred cCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecC-CC-eE
Q 047728 200 MKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF-DG-LV 276 (474)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~-~l 276 (474)
. .....+...|.+++|++ ++.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++ +|
T Consensus 525 ------------~-~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L 591 (793)
T PLN00181 525 ------------P-VVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL 591 (793)
T ss_pred ------------c-eEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEE
Confidence 0 00012446799999987 578999999999999999999999999999999999999997 55 89
Q ss_pred EEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEc-CCCCEEEEEcCCCcEEEeecCcccccceeeeecceee
Q 047728 277 FTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAIS-PDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI 355 (474)
Q Consensus 277 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v 355 (474)
++|+.|+.|++||++.... ...+. +...+.++.|. +++.+|++|+.|+.|++||++........+.+|...+
T Consensus 592 ~Sgs~Dg~v~iWd~~~~~~------~~~~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V 664 (793)
T PLN00181 592 ASGSDDGSVKLWSINQGVS------IGTIK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTV 664 (793)
T ss_pred EEEcCCCEEEEEECCCCcE------EEEEe-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCE
Confidence 9999999999999975432 22222 34578999995 4799999999999999999987654445667888888
Q ss_pred EEEEe-cCCEEEEEeCCCcEEEEECCCCc----eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728 356 LCLVT-AGNLVFSGSADMSICIWRRKENE----HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 356 ~~~~~-~~~~l~sgs~dg~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
.++.+ ++.+|++++.|++|+|||+.... ..++..+.+|...+.+++|++++. +|++|+.|+.|++|+
T Consensus 665 ~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~--------~lasgs~D~~v~iw~ 736 (793)
T PLN00181 665 SYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG--------YIATGSETNEVFVYH 736 (793)
T ss_pred EEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC--------EEEEEeCCCEEEEEE
Confidence 77765 68899999999999999997431 124678899999999999999998 999999999999999
Q ss_pred ccCCCCCCCCC------cccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728 431 VSEQAPPLVST------TQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 431 ~~~~~~~~~~~------~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
.....+..... ........+...|.++ +|++||.+++++
T Consensus 737 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v----~ws~~~~~lva~ 781 (793)
T PLN00181 737 KAFPMPVLSYKFKTIDPVSGLEVDDASQFISSV----CWRGQSSTLVAA 781 (793)
T ss_pred CCCCCceEEEecccCCcccccccCCCCcEEEEE----EEcCCCCeEEEe
Confidence 87653321110 0001123345567777 456677777665
No 53
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-31 Score=218.10 Aligned_cols=258 Identities=18% Similarity=0.300 Sum_probs=216.3
Q ss_pred CCcEEEEeCC--ccccccc--cCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecC
Q 047728 129 SKNIRVWKNQ--REFSGFK--SNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMK 201 (474)
Q Consensus 129 dg~v~vwd~~--~~~~~~~--~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (474)
.|.+.|-+.. +.+..+. .-.+.+..++|+ .+.+++++.||++++||......
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~--------------------- 95 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK--------------------- 95 (311)
T ss_pred CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---------------------
Confidence 6778888753 3333322 235678899998 56899999999999999544322
Q ss_pred CCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEE
Q 047728 202 PSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFT 278 (474)
Q Consensus 202 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~ 278 (474)
+...|++|..+|.++.|++ ....++++++|++|++|+....+.+.++.+|...|...+|+|.- .+++
T Consensus 96 ----------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas 165 (311)
T KOG0277|consen 96 ----------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFAS 165 (311)
T ss_pred ----------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEE
Confidence 1235667999999999999 66778889999999999999999999999999999999999986 9999
Q ss_pred eeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE
Q 047728 279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC 357 (474)
Q Consensus 279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~ 357 (474)
++.|+++++||++..++ ...+..|...|.++.|+. +.++|++|+.|+.|++||+++.+.+...+.+|...|..
T Consensus 166 ~Sgd~~l~lwdvr~~gk------~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRk 239 (311)
T KOG0277|consen 166 ASGDGTLRLWDVRSPGK------FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRK 239 (311)
T ss_pred ccCCceEEEEEecCCCc------eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEE
Confidence 99999999999997765 334777888999999998 78899999999999999999988888888999988866
Q ss_pred EEe---cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728 358 LVT---AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431 (474)
Q Consensus 358 ~~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~ 431 (474)
+.+ ...+|++++.|-+++|||...... ++.+...|+.-|..+.|++-... ++|+++.|+.++||+-
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds-~~e~~~~HtEFv~g~Dws~~~~~-------~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQDS-AIETVDHHTEFVCGLDWSLFDPG-------QVASTGWDELLYVWNP 308 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccchh-hhhhhhccceEEeccccccccCc-------eeeecccccceeeecc
Confidence 654 367999999999999999986543 36677789999999999987554 8999999999999984
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.3e-31 Score=230.24 Aligned_cols=269 Identities=24% Similarity=0.369 Sum_probs=224.5
Q ss_pred cCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728 146 SNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS 225 (474)
Q Consensus 146 ~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 225 (474)
.|.+.|.++...++.|++|+.||.+++||...... ..+.+|.++|.+
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~---------------------------------~~~~Ght~~ik~ 149 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSI---------------------------------KTIVGHTGPIKS 149 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecCCceE---------------------------------EEEecCCcceee
Confidence 48889999998899999999999999999876533 234569999998
Q ss_pred EEecCCC---CEEEEEECCCcEEEEEcCCcce----eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccC----
Q 047728 226 LSMSEDQ---NLLYSASWDKTFKVWRTSDYKC----LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQ---- 293 (474)
Q Consensus 226 l~~~~~~---~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~---- 293 (474)
++|.-.. ..|++++.|.++++|-.+.++. +..-.+|...|.++...+++ ++++|+.|.+|.||+....
T Consensus 150 v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 150 VAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred eEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcccc
Confidence 8885533 4699999999999999876653 33345899999999999999 9999999999999983211
Q ss_pred ---------------CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE
Q 047728 294 ---------------GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL 358 (474)
Q Consensus 294 ---------------~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~ 358 (474)
+......+...+.+|..+|.++.|++ ...+++++.|.+|+.||+.++........+........
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~ 308 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISY 308 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeec
Confidence 11123345677889999999999998 77899999999999999999988777776666667777
Q ss_pred EecCCEEEEEeCCCcEEEEECCCCc-eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728 359 VTAGNLVFSGSADMSICIWRRKENE-HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP 437 (474)
Q Consensus 359 ~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~ 437 (474)
.+..++|++|+.|..|++||.+++. ......+.+|.+.|.++.|+|.... +|++|+.|+++++||++...
T Consensus 309 ~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~-------~~~S~S~D~t~klWDvRS~k-- 379 (423)
T KOG0313|consen 309 SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEF-------QLVSGSYDNTVKLWDVRSTK-- 379 (423)
T ss_pred ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCce-------EEEEEecCCeEEEEEeccCC--
Confidence 7889999999999999999998764 2345788999999999999999875 89999999999999999874
Q ss_pred CCCCcccccccCCCCCCCccccCC
Q 047728 438 LVSTTQQHPLEGHGVAPNSLPYAP 461 (474)
Q Consensus 438 ~~~~~~~~~~~~~~~~v~~l~~~p 461 (474)
.++..+.+|...|-++.|+-
T Consensus 380 ----~plydI~~h~DKvl~vdW~~ 399 (423)
T KOG0313|consen 380 ----APLYDIAGHNDKVLSVDWNE 399 (423)
T ss_pred ----CcceeeccCCceEEEEeccC
Confidence 36678899999999997763
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-31 Score=241.94 Aligned_cols=275 Identities=21% Similarity=0.305 Sum_probs=232.2
Q ss_pred eeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCC
Q 047728 104 GSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSS 177 (474)
Q Consensus 104 ~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~ 177 (474)
+.+..|...|.++.+. ...++++-..|.|.||+ ++..+..+.-..-+|.+..|- .+.+++|+.|..||||+.++
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 4455688889998876 66899999999999998 446677888888899999887 67999999999999999999
Q ss_pred CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC-cceee
Q 047728 178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD-YKCLE 256 (474)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~ 256 (474)
.+.+. .|..|.+-|+|++.+|...+++++++|-+|++||.+. ..+.+
T Consensus 87 ~ekV~--------------------------------~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q 134 (794)
T KOG0276|consen 87 GEKVK--------------------------------TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ 134 (794)
T ss_pred ceeeE--------------------------------EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee
Confidence 87653 4456999999999999999999999999999999975 46788
Q ss_pred eeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC--CCCEEEEEcCCCc
Q 047728 257 SVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP--DAAIVYCGSSDGL 332 (474)
Q Consensus 257 ~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~dg~ 332 (474)
++.+|...|.+++|.|.. .+++++-|++|++|.+.... +..++.+|...|+|+.+-+ |..+|++|+.|.+
T Consensus 135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t 208 (794)
T KOG0276|consen 135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT 208 (794)
T ss_pred EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC------CceeeeccccCcceEEeccCCCcceEEecCCCce
Confidence 999999999999999987 99999999999999987654 3567889999999999988 4579999999999
Q ss_pred EEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcccc
Q 047728 333 VNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLS 410 (474)
Q Consensus 333 i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 410 (474)
|+|||.++..++ +.+.+|...| .++.|.=.++++|++||+++||+..+-+ ....+.-.-+.|+|++-.+.+.
T Consensus 209 iKvWDyQtk~CV-~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~--lE~tLn~gleRvW~I~~~k~~~--- 282 (794)
T KOG0276|consen 209 IKVWDYQTKSCV-QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK--LEKTLNYGLERVWCIAAHKGDG--- 282 (794)
T ss_pred EEEeecchHHHH-HHhhcccccceEEEecCCCcEEEEecCCccEEEecCccee--hhhhhhcCCceEEEEeecCCCC---
Confidence 999999988776 5677787666 5555667799999999999999987766 3345555567899999888777
Q ss_pred ccceEEEEEecCCCcEE
Q 047728 411 REKRWILYSGSLDKSVK 427 (474)
Q Consensus 411 ~~~~~~l~s~s~Dg~i~ 427 (474)
.++.|.+.|.|.
T Consensus 283 -----~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 283 -----KIAVGFDEGSVT 294 (794)
T ss_pred -----eEEEeccCCcEE
Confidence 677777666553
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.4e-31 Score=252.42 Aligned_cols=267 Identities=21% Similarity=0.346 Sum_probs=225.8
Q ss_pred cccccCccCEEEEEecC--CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728 142 SGFKSNSGLVKAIVISN--EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH 219 (474)
Q Consensus 142 ~~~~~h~~~V~~i~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 219 (474)
..|...+..|..++|++ ..++++-..|.|++||..-+.++. .|.+|
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~--------------------------------rFdeH 50 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID--------------------------------RFDEH 50 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh--------------------------------hhhcc
Confidence 34566778899999994 489999999999999998876542 34569
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCcee
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTK 298 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~ 298 (474)
.++|..++|+|.+.++++|++|-.|++|+..+.+|+.++.+|-+.|..+.|++.- .+++++.|.+|+||+.....
T Consensus 51 dGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~---- 126 (1202)
T KOG0292|consen 51 DGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK---- 126 (1202)
T ss_pred CCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc----
Confidence 9999999999999999999999999999999999999999999999999999987 99999999999999998655
Q ss_pred eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc----------------------------ccceeeee
Q 047728 299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL----------------------------SHGGVLRG 350 (474)
Q Consensus 299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~----------------------------~~~~~~~~ 350 (474)
+...+.+|...|.|..|+|....+++++-|.+|++||+..-+ .+..++.+
T Consensus 127 --~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 127 --CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred --eEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence 578899999999999999999999999999999999964211 12334567
Q ss_pred cceeeEE--EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEE
Q 047728 351 HKLAILC--LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM 428 (474)
Q Consensus 351 ~~~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v 428 (474)
|...|.- |.|.-.++++|+.|..|++|.....+.-.+.+..+|.+.|.++-|+|... ++++.|+|++|+|
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~--------lIlSnsEDksirV 276 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD--------LILSNSEDKSIRV 276 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc--------eeEecCCCccEEE
Confidence 7777744 44455899999999999999997665445778899999999999999888 9999999999999
Q ss_pred EEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728 429 WRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP 461 (474)
Q Consensus 429 w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p 461 (474)
||+... +..+.+.....+...++-+|
T Consensus 277 wDm~kR-------t~v~tfrrendRFW~laahP 302 (1202)
T KOG0292|consen 277 WDMTKR-------TSVQTFRRENDRFWILAAHP 302 (1202)
T ss_pred Eecccc-------cceeeeeccCCeEEEEEecC
Confidence 999887 34445544555556665555
No 57
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=6.9e-30 Score=217.02 Aligned_cols=263 Identities=19% Similarity=0.318 Sum_probs=210.8
Q ss_pred EEEeeCCCcEEEEeCC--------------ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecc
Q 047728 123 LYTGSDSKNIRVWKNQ--------------REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGT 188 (474)
Q Consensus 123 l~tgs~dg~v~vwd~~--------------~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 188 (474)
|++|+....|.-+++. .++..+..|.++|++++.++.++++|+.|-+|+|||+......
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~ql------- 76 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQL------- 76 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhh-------
Confidence 5666666655555421 1255678999999999999999999999999999999887543
Q ss_pred cCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCC--EEEEEECCCcEEEEEcCCcceeeeeeecCccee
Q 047728 189 LPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQN--LLYSASWDKTFKVWRTSDYKCLESVIAHDDAVN 266 (474)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~ 266 (474)
+.+..|.+.|+++.|.+.-. .|++|+.||.|.+|+....+++.++++|.+.|+
T Consensus 77 -------------------------g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt 131 (362)
T KOG0294|consen 77 -------------------------GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT 131 (362)
T ss_pred -------------------------cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccc
Confidence 33455999999999998654 899999999999999999999999999999999
Q ss_pred EEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc
Q 047728 267 SIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG 345 (474)
Q Consensus 267 ~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~ 345 (474)
.++++|.+ +.++.+.|+.+++||+-.+..... ..-....+.+.|+|.|.+++.+..+ .|-+|.+++.....
T Consensus 132 ~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v-------~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~ 203 (362)
T KOG0294|consen 132 DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV-------LNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFR 203 (362)
T ss_pred eeEecCCCceEEEEcCCceeeeehhhcCcccee-------eccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhh
Confidence 99999999 777889999999999976654211 1122234459999999999888776 48889887765443
Q ss_pred eeeeecceeeEEEEe-cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC
Q 047728 346 GVLRGHKLAILCLVT-AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424 (474)
Q Consensus 346 ~~~~~~~~~v~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg 424 (474)
.+... ..+.|+.+ ++..|++|..|+.|.+||..... +...+.+|...|.++.+..+... .+|+|+|.||
T Consensus 204 ~i~~~--~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~--~~~~~~AH~~RVK~i~~~~~~~~------~~lvTaSSDG 273 (362)
T KOG0294|consen 204 EIENP--KRILCATFLDGSELLVGGDNEWISLKDTDSDT--PLTEFLAHENRVKDIASYTNPEH------EYLVTASSDG 273 (362)
T ss_pred hhhcc--ccceeeeecCCceEEEecCCceEEEeccCCCc--cceeeecchhheeeeEEEecCCc------eEEEEeccCc
Confidence 33322 45677766 68899999999999999998865 57789999999999996544321 1999999999
Q ss_pred cEEEEEccCCC
Q 047728 425 SVKMWRVSEQA 435 (474)
Q Consensus 425 ~i~vw~~~~~~ 435 (474)
.|+|||++...
T Consensus 274 ~I~vWd~~~~~ 284 (362)
T KOG0294|consen 274 FIKVWDIDMET 284 (362)
T ss_pred eEEEEEccccc
Confidence 99999998763
No 58
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=6.7e-32 Score=229.92 Aligned_cols=286 Identities=24% Similarity=0.350 Sum_probs=233.2
Q ss_pred cceeeeee-eeecCcEEE--EEEcCCEEEEeeCCCcEEEEeC--Cc--------cccccccCccCEEEEEec--CCEEEE
Q 047728 99 PNVLIGSL-VREEGHIYS--LAAAGDLLYTGSDSKNIRVWKN--QR--------EFSGFKSNSGLVKAIVIS--NEKIFS 163 (474)
Q Consensus 99 ~~~~~~~l-~~h~~~i~~--~~~~~~~l~tgs~dg~v~vwd~--~~--------~~~~~~~h~~~V~~i~~~--~~~l~s 163 (474)
|.++.+++ ++.+.++-| |+|+|+||++|+.||.|.||+. ++ ....|..+.++|.|+.|+ .++|++
T Consensus 201 Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAs 280 (508)
T KOG0275|consen 201 PTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLAS 280 (508)
T ss_pred hHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhc
Confidence 44444443 355666666 5667999999999999999982 22 123456789999999999 569999
Q ss_pred EeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCc
Q 047728 164 GHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKT 243 (474)
Q Consensus 164 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~ 243 (474)
|+.||.|++|.+.++++...+.. .|+..|+|+.|+.|+..+++++.|.+
T Consensus 281 GsqDGkIKvWri~tG~ClRrFdr-------------------------------AHtkGvt~l~FSrD~SqiLS~sfD~t 329 (508)
T KOG0275|consen 281 GSQDGKIKVWRIETGQCLRRFDR-------------------------------AHTKGVTCLSFSRDNSQILSASFDQT 329 (508)
T ss_pred cCcCCcEEEEEEecchHHHHhhh-------------------------------hhccCeeEEEEccCcchhhcccccce
Confidence 99999999999999998754432 39999999999999999999999999
Q ss_pred EEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CC
Q 047728 244 FKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DA 321 (474)
Q Consensus 244 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~ 321 (474)
+++.-+++|+++..+++|...|+...|.++| .+++++.||+|++|+..+...... ....+...+|..+-.-| +.
T Consensus 330 vRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~T----fk~~~~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 330 VRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLST----FKPLGTDYPVNSVILLPKNP 405 (508)
T ss_pred EEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhh----ccCCCCcccceeEEEcCCCC
Confidence 9999999999999999999999999999999 999999999999999876543211 11223566788888888 55
Q ss_pred CEEEEEcCCCcEEEeecCcccccceeeee----cceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccce
Q 047728 322 AIVYCGSSDGLVNFWERELNLSHGGVLRG----HKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPV 397 (474)
Q Consensus 322 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v 397 (474)
..++++...++|++.++.... +..+..+ ..--..+++|.|.++++.++|+.++.|.+.++. ...++..|...|
T Consensus 406 eh~iVCNrsntv~imn~qGQv-VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~--LE~tl~VhEkdv 482 (508)
T KOG0275|consen 406 EHFIVCNRSNTVYIMNMQGQV-VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK--LERTLPVHEKDV 482 (508)
T ss_pred ceEEEEcCCCeEEEEeccceE-EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc--eeeeeecccccc
Confidence 688889999999999887542 2122211 222346788999999999999999999999988 456788899999
Q ss_pred EEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728 398 KCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 398 ~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
..++-+|..+ +|++-++||.+++|.
T Consensus 483 IGl~HHPHqN--------llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 483 IGLTHHPHQN--------LLASYSEDGLLKLWK 507 (508)
T ss_pred cccccCcccc--------hhhhhcccchhhhcC
Confidence 9999999988 899999999999995
No 59
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.2e-30 Score=221.69 Aligned_cols=321 Identities=18% Similarity=0.264 Sum_probs=249.7
Q ss_pred cceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEE
Q 047728 99 PNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRV 172 (474)
Q Consensus 99 ~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~v 172 (474)
...+++.+.+|++.||.++.+ ...+.+++.|.+.+||. .++++..+.+|.+.|++|.|+ +.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 346788899999999999987 55899999999999997 557899999999999999998 678999999999999
Q ss_pred EecC------CCCcceeee-eccc----CccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC
Q 047728 173 WKVS------SKDASIHKR-VGTL----PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD 241 (474)
Q Consensus 173 wd~~------~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d 241 (474)
|... ......... ..+. ....+.-........ ..+-+...+.+|...|.+..|-..++.++++++|
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~---tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH---TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc---eeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence 9832 211110000 0000 000000000000111 1222335577899999999999999999999999
Q ss_pred CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC
Q 047728 242 KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD 320 (474)
Q Consensus 242 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 320 (474)
.+-.+||+++++.+..+.+|....+.++-+|.. ++++.+.|.+.++||++..-. ....+.+|...|+++.|..+
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~-----sV~VFQGHtdtVTS~vF~~d 368 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ-----SVAVFQGHTDTVTSVVFNTD 368 (481)
T ss_pred ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcc-----eeeeecccccceeEEEEecC
Confidence 999999999999999999999999999999988 888999999999999984332 46778999999999999976
Q ss_pred CCEEEEEcCCCcEEEeecCcccccceeeee-cceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEE--EeecCCccce
Q 047728 321 AAIVYCGSSDGLVNFWERELNLSHGGVLRG-HKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICL--SMLTGHSGPV 397 (474)
Q Consensus 321 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~--~~~~~h~~~v 397 (474)
. .+++|+.|.+|++||+++.......++. ....-++++..+..++.--.+..|++||+...+...+ ..-.+|...|
T Consensus 369 d-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV 447 (481)
T KOG0300|consen 369 D-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMV 447 (481)
T ss_pred C-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceee
Confidence 5 5678999999999999988766555543 3344566777778888888899999999987753222 2446899999
Q ss_pred EEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 398 KCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 398 ~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+|++|..+.... -|++++-|..+.-|++...
T Consensus 448 ~c~AW~eehp~c------nLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 448 TCCAWLEEHPAC------NLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeeccccCccc------ccccccccceeeeeEeccc
Confidence 999999876522 5899999999999999765
No 60
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=6.4e-30 Score=225.80 Aligned_cols=274 Identities=21% Similarity=0.303 Sum_probs=236.3
Q ss_pred cEEEEEEcC--CEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728 112 HIYSLAAAG--DLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKR 185 (474)
Q Consensus 112 ~i~~~~~~~--~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 185 (474)
.|.++...+ ..++||+.|.++.++| .++.+..+++|...|+.+.++ .+.+++++.|-.|+||.........
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~--- 297 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT--- 297 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc---
Confidence 477777664 7999999999999998 457789999999999999999 4578999999999999988765332
Q ss_pred ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeec--Cc
Q 047728 186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH--DD 263 (474)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~ 263 (474)
....|..+|+.+..+|.|.||++++.|++..+.|++++.++...... .-
T Consensus 298 -----------------------------~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v 348 (506)
T KOG0289|consen 298 -----------------------------SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDV 348 (506)
T ss_pred -----------------------------ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccc
Confidence 22349999999999999999999999999999999999988776542 34
Q ss_pred ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc
Q 047728 264 AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL 342 (474)
Q Consensus 264 ~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~ 342 (474)
.+++.+|+||| .|.+|..||.|+|||+..+.. ...+.+|.++|..++|+.+|-+|++++.|+.|++||++..+
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred eeEEeeEcCCceEEeccCCCceEEEEEcCCccc------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 58999999999 889999999999999987653 67788899999999999999999999999999999999887
Q ss_pred ccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEe
Q 047728 343 SHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSG 420 (474)
Q Consensus 343 ~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~ 420 (474)
....+.......+ ++|...|.+|+.++.|=.|++++-.+.++.++..+..|.+..+++.|..... +++++
T Consensus 423 n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq--------~l~s~ 494 (506)
T KOG0289|consen 423 NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQ--------YLAST 494 (506)
T ss_pred ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccce--------EEeec
Confidence 6655555444344 5555569999999999888888888888888889999999999999999988 99999
Q ss_pred cCCCcEEEEEc
Q 047728 421 SLDKSVKMWRV 431 (474)
Q Consensus 421 s~Dg~i~vw~~ 431 (474)
|.|..++++.+
T Consensus 495 smd~~l~~~a~ 505 (506)
T KOG0289|consen 495 SMDAILRLYAL 505 (506)
T ss_pred cchhheEEeec
Confidence 99999998865
No 61
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-30 Score=226.97 Aligned_cols=280 Identities=20% Similarity=0.278 Sum_probs=227.7
Q ss_pred ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728 139 REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW 216 (474)
Q Consensus 139 ~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (474)
+..+.+..|.+.|..+.|+ |.+||+++.|.+..+|++........ ..++
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl-----------------------------~~tl 265 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKL-----------------------------KKTL 265 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceee-----------------------------eeee
Confidence 4567788999999999998 78999999999999999876543111 1345
Q ss_pred eeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee-cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCC
Q 047728 217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQG 294 (474)
Q Consensus 217 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~ 294 (474)
.+|..+|..+.|+||.++|++|+.|..+.+||+.+|.+...+.. +...+.+++|.||+ .+++|+.|+.+..||+....
T Consensus 266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~ 345 (519)
T KOG0293|consen 266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI 345 (519)
T ss_pred ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch
Confidence 67999999999999999999999999999999999998877743 46889999999999 99999999999999987432
Q ss_pred CceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcE
Q 047728 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSI 374 (474)
Q Consensus 295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i 374 (474)
. ..........|.++++.+||+++++.+.|..|++|+.++......+...+.....+++-+++++++--.+..|
T Consensus 346 ~------~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 346 L------GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred h------hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCee
Confidence 2 1111112356999999999999999999999999999877655444455666678888899999999999999
Q ss_pred EEEECCCCceEEEEeecCCccc--eEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCC
Q 047728 375 CIWRRKENEHICLSMLTGHSGP--VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGV 452 (474)
Q Consensus 375 ~iwd~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 452 (474)
++||++... .+..+.||... |..-+|---+.. ++++||+|+.|+||+..++ .+...+.||..
T Consensus 420 ~LWDl~e~~--lv~kY~Ghkq~~fiIrSCFgg~~~~-------fiaSGSED~kvyIWhr~sg-------kll~~LsGHs~ 483 (519)
T KOG0293|consen 420 HLWDLEENK--LVRKYFGHKQGHFIIRSCFGGGNDK-------FIASGSEDSKVYIWHRISG-------KLLAVLSGHSK 483 (519)
T ss_pred EEeecchhh--HHHHhhcccccceEEEeccCCCCcc-------eEEecCCCceEEEEEccCC-------ceeEeecCCcc
Confidence 999999554 46677788654 334445433322 8999999999999999988 67778999999
Q ss_pred CCCccccCCC-------CCcCCce
Q 047728 453 APNSLPYAPS-------FSSQGRI 469 (474)
Q Consensus 453 ~v~~l~~~p~-------~s~Dg~~ 469 (474)
.|++++|+|+ -|.||++
T Consensus 484 ~vNcVswNP~~p~m~ASasDDgtI 507 (519)
T KOG0293|consen 484 TVNCVSWNPADPEMFASASDDGTI 507 (519)
T ss_pred eeeEEecCCCCHHHhhccCCCCeE
Confidence 9999999994 3666665
No 62
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.2e-30 Score=246.14 Aligned_cols=251 Identities=20% Similarity=0.319 Sum_probs=197.8
Q ss_pred CCcceeeeeee-eecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc----------------------------------
Q 047728 97 FSPNVLIGSLV-REEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR---------------------------------- 139 (474)
Q Consensus 97 ~~~~~~~~~l~-~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~---------------------------------- 139 (474)
+......+.+. .|++.|+++.|+ |+|||+|++||.|+||.+..
T Consensus 253 lsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~ 332 (712)
T KOG0283|consen 253 LSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKI 332 (712)
T ss_pred ceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccc
Confidence 33444555677 899999998887 99999999999999995211
Q ss_pred ----------------------------cccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccC
Q 047728 140 ----------------------------EFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLP 190 (474)
Q Consensus 140 ----------------------------~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 190 (474)
+++.|++|.+.|..+.|+ +++|++++.|.+||+|++...+++..+.
T Consensus 333 ~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~----- 407 (712)
T KOG0283|consen 333 SSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS----- 407 (712)
T ss_pred cccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-----
Confidence 244578999999999999 8899999999999999999988875543
Q ss_pred ccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEE
Q 047728 191 TFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV 269 (474)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~ 269 (474)
|.+-|+|++|+| |.++|++|+-|+.|+||++...+.+.-... ..-|++++
T Consensus 408 ----------------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvc 458 (712)
T KOG0283|consen 408 ----------------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVC 458 (712)
T ss_pred ----------------------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEE
Confidence 999999999999 889999999999999999988776654443 58899999
Q ss_pred ecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee--eeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccc
Q 047728 270 AGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS--QTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHG 345 (474)
Q Consensus 270 ~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~ 345 (474)
+.|+| ..++|+.+|.+++|+.+..+......+. .........|+.+.|.| +...+++.+.|..|+|||.+....+.
T Consensus 459 y~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~ 538 (712)
T KOG0283|consen 459 YSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH 538 (712)
T ss_pred eccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh
Confidence 99999 8999999999999998754332211111 11111223799999998 44568888999999999997665443
Q ss_pred eee---eecceeeEEEEecCCEEEEEeCCCcEEEEECCC
Q 047728 346 GVL---RGHKLAILCLVTAGNLVFSGSADMSICIWRRKE 381 (474)
Q Consensus 346 ~~~---~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~ 381 (474)
.+. ..+...-..|+.+|++|+++++|..|+||+...
T Consensus 539 KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 539 KFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred hhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 322 222233466778999999999999999999743
No 63
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5e-31 Score=227.79 Aligned_cols=284 Identities=17% Similarity=0.272 Sum_probs=232.9
Q ss_pred ceeeeeeeeecCcEEEEEEcCC---EEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEe
Q 047728 100 NVLIGSLVREEGHIYSLAAAGD---LLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWK 174 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~~~---~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd 174 (474)
..+++.|.+|.+.|.|++-+.+ .+++|+.||.|+|||+. .++..++.|.+.|..|++..+.+++++.|.+|+.|.
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWK 135 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeee
Confidence 4567889999999999998843 68999999999999955 578899999999999999999999999999999999
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC 254 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 254 (474)
++.... . . ......+..|.-+..+..++|++. .|.|||.+...+
T Consensus 136 ~~~~p~-~-t--------------------------------ilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~P 179 (433)
T KOG0268|consen 136 IDGPPL-H-T--------------------------------ILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNP 179 (433)
T ss_pred ccCCcc-e-e--------------------------------eeccccccccccccccccccccCc--eeeecccccCCc
Confidence 887311 0 0 013345566666666778888875 599999999899
Q ss_pred eeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728 255 LESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL 332 (474)
Q Consensus 255 ~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 332 (474)
+..+.-..+.|.++.|+|-. .|+++..|+.|.+||++......+... ...-+.|+|+|++-.++++++|..
T Consensus 180 v~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-------~mRTN~IswnPeafnF~~a~ED~n 252 (433)
T KOG0268|consen 180 VSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-------TMRTNTICWNPEAFNFVAANEDHN 252 (433)
T ss_pred cceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-------eccccceecCccccceeecccccc
Confidence 99998888899999999987 888889999999999997765333222 233567999998889999999999
Q ss_pred EEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcccc
Q 047728 333 VNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLS 410 (474)
Q Consensus 333 i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 410 (474)
++.||++..........+|...++.+ +|.|+-+++|+-|.+|+||..+.+...-+. ....-..|.|+.|+.|.+
T Consensus 253 lY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY-htkRMq~V~~Vk~S~Dsk--- 328 (433)
T KOG0268|consen 253 LYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY-HTKRMQHVFCVKYSMDSK--- 328 (433)
T ss_pred ceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh-hHhhhheeeEEEEecccc---
Confidence 99999999888888899999999765 567999999999999999999876522111 111234699999999999
Q ss_pred ccceEEEEEecCCCcEEEEEccCCC
Q 047728 411 REKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 411 ~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
++++||+|+.|++|.-...+
T Consensus 329 -----yi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 329 -----YIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred -----EEEecCCCcceeeeecchhh
Confidence 99999999999999876543
No 64
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-28 Score=209.44 Aligned_cols=281 Identities=21% Similarity=0.332 Sum_probs=222.3
Q ss_pred eeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeC--CCeEEEEecCC
Q 047728 106 LVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQ--DGKIRVWKVSS 177 (474)
Q Consensus 106 l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~--dg~i~vwd~~~ 177 (474)
+..-.+.|.++.|+ |.+|+++++|.+++|||.. +.+..+..+.-.|..++|. ...++.++. |.+||..++.+
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 33456789999987 8899999999999999944 5566676676677777775 556666665 88999999998
Q ss_pred CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee
Q 047728 178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES 257 (474)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 257 (474)
.+.+. .|.||...|++|+.+|-+..+++++.|++|++||++..++...
T Consensus 90 NkylR--------------------------------YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~ 137 (311)
T KOG1446|consen 90 NKYLR--------------------------------YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL 137 (311)
T ss_pred CceEE--------------------------------EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE
Confidence 87653 4567999999999999889999999999999999998888877
Q ss_pred eeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEe
Q 047728 258 VIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFW 336 (474)
Q Consensus 258 ~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~ 336 (474)
+.....+ .+++.|+| .+|++.....|++||++.-.++....+... .......+.+.|+|+|++|+.++..+.+++.
T Consensus 138 l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~-~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~l 214 (311)
T KOG1446|consen 138 LNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT-DNDEAEWTDLEFSPDGKSILLSTNASFIYLL 214 (311)
T ss_pred EecCCCc--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC-CCCccceeeeEEcCCCCEEEEEeCCCcEEEE
Confidence 7654444 47899999 666666666999999998765544333222 2556779999999999999999999999999
Q ss_pred ecCcccccceeeeecce-----eeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC-CccceEEEEEeeCCcccc
Q 047728 337 ERELNLSHGGVLRGHKL-----AILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG-HSGPVKCLAVEKDDESLS 410 (474)
Q Consensus 337 d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~ 410 (474)
|.-.+.... .+..+.. .-.++.|+++++++|+.||+|.+|+++++.. +..+.+ +.+++.++.|+|.-.
T Consensus 215 DAf~G~~~~-tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~--v~~~~~~~~~~~~~~~fnP~~~--- 288 (311)
T KOG1446|consen 215 DAFDGTVKS-TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK--VAVLRGPNGGPVSCVRFNPRYA--- 288 (311)
T ss_pred EccCCcEee-eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE--eeEecCCCCCCccccccCCcee---
Confidence 987776443 3333322 2377889999999999999999999999984 556666 789999999999866
Q ss_pred ccceEEEEEecCCCcEEEEEccCC
Q 047728 411 REKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 411 ~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+++++ +..+.+|=....
T Consensus 289 -----mf~sa--~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 289 -----MFVSA--SSNLVFWLPDED 305 (311)
T ss_pred -----eeeec--CceEEEEecccc
Confidence 66666 457888876644
No 65
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5.1e-31 Score=231.37 Aligned_cols=283 Identities=22% Similarity=0.338 Sum_probs=232.7
Q ss_pred cceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC----ccccccccCccCEEEEEec--CCEEEEEeCCCeE
Q 047728 99 PNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ----REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKI 170 (474)
Q Consensus 99 ~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i 170 (474)
|......+..|++.|..+.|- .+.|+||+.|..|++|+.. .....+.+..+.|+.+.|+ +.++++++.|+.+
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCce
Confidence 444555678899999998886 4799999999999999843 2456777888999999998 7799999999999
Q ss_pred EEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC
Q 047728 171 RVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS 250 (474)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 250 (474)
++|+++..+.. .++.+|++.|+++.|......+++|+.|.+|++||+.
T Consensus 244 r~Wnvd~~r~~--------------------------------~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~ 291 (459)
T KOG0288|consen 244 RLWNVDSLRLR--------------------------------HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ 291 (459)
T ss_pred eeeeccchhhh--------------------------------hhhcccccceeeehhhccccceeeccccchhhhhhhh
Confidence 99999987654 3567799999999999877779999999999999999
Q ss_pred CcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC
Q 047728 251 DYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD 330 (474)
Q Consensus 251 ~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 330 (474)
...|..++.. ...+.+|+.. ...+++|-.|++|++||.+.... .... ...+.|+++..++++..|++++.|
T Consensus 292 k~~C~kt~l~-~S~cnDI~~~-~~~~~SgH~DkkvRfwD~Rs~~~------~~sv-~~gg~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 292 KAYCSKTVLP-GSQCNDIVCS-ISDVISGHFDKKVRFWDIRSADK------TRSV-PLGGRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred hhheeccccc-cccccceEec-ceeeeecccccceEEEeccCCce------eeEe-ecCcceeeEeeccCCeEEeeecCC
Confidence 9888887754 5566777766 33889999999999999986653 2222 334489999999999999999999
Q ss_pred CcEEEeecCcccccc-----eeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728 331 GLVNFWERELNLSHG-----GVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405 (474)
Q Consensus 331 g~i~v~d~~~~~~~~-----~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~ 405 (474)
.++.+.|+++..... .+..++...-.+|+|++.|+++|+.||.|+||++.+++...+.........|++++|+|.
T Consensus 363 dtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 363 DTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS 442 (459)
T ss_pred CceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence 999999999875432 233456677799999999999999999999999999984433333333336999999999
Q ss_pred CccccccceEEEEEecCCCcEEEEE
Q 047728 406 DESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 406 ~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
|. .|++++.++.+.+|.
T Consensus 443 G~--------~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 443 GS--------GLLSADKQKAVTLWT 459 (459)
T ss_pred Cc--------hhhcccCCcceEecC
Confidence 99 899999999999994
No 66
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=9e-29 Score=204.95 Aligned_cols=277 Identities=19% Similarity=0.264 Sum_probs=225.2
Q ss_pred eeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcc----ccccccCccCEEEEEec---CCEEEEEeCCCeEEEEe
Q 047728 104 GSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQRE----FSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWK 174 (474)
Q Consensus 104 ~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~----~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd 174 (474)
+.+.+|.++|.+++++ |..|++|+.|+++++|+.... -....+|.+.|-.++|+ ++.+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 6678899999999987 999999999999999986533 23457899999999997 77999999999999999
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC 254 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 254 (474)
+..+++..... ....=.-+.|+|++.+++.++.|..|.+.|.++.+.
T Consensus 94 ~r~~k~~~~i~---------------------------------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~ 140 (313)
T KOG1407|consen 94 IRSGKCTARIE---------------------------------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKI 140 (313)
T ss_pred eccCcEEEEee---------------------------------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccce
Confidence 99988754332 223334678999999999999999999999999887
Q ss_pred eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728 255 LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV 333 (474)
Q Consensus 255 ~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 333 (474)
+...+. ...+..+.|+.++ +++.....|.|.|......+ +...+..|.....|+.|+|+|++||+|+.|..+
T Consensus 141 ~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk------pv~si~AH~snCicI~f~p~GryfA~GsADAlv 213 (313)
T KOG1407|consen 141 VNEEQF-KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK------PVQSIKAHPSNCICIEFDPDGRYFATGSADALV 213 (313)
T ss_pred eehhcc-cceeeeeeecCCCCEEEEecCCceEEEEeccccc------cccccccCCcceEEEEECCCCceEeecccccee
Confidence 766543 5567788888777 77777777999998876433 477888999999999999999999999999999
Q ss_pred EEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccc
Q 047728 334 NFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSR 411 (474)
Q Consensus 334 ~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 411 (474)
.+||++...+. +.+..+.-+| ++|+.+|++||+|++|..|-|=+++++.. +..++ +.++...|+|+|...
T Consensus 214 SLWD~~ELiC~-R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~--~~eI~-~~~~t~tVAWHPk~~---- 285 (313)
T KOG1407|consen 214 SLWDVDELICE-RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR--VWEIP-CEGPTFTVAWHPKRP---- 285 (313)
T ss_pred eccChhHhhhh-eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCe--EEEee-ccCCceeEEecCCCc----
Confidence 99999876555 4445555555 55666899999999999999999999984 44444 788999999999988
Q ss_pred cceEEEEEecCC---------CcEEEEEcc
Q 047728 412 EKRWILYSGSLD---------KSVKMWRVS 432 (474)
Q Consensus 412 ~~~~~l~s~s~D---------g~i~vw~~~ 432 (474)
+||-+++| |.|++|-+.
T Consensus 286 ----LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 286 ----LLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ----eeeEEecCCCCccccccceeEEecCC
Confidence 78777655 456665543
No 67
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.4e-29 Score=232.93 Aligned_cols=278 Identities=24% Similarity=0.386 Sum_probs=229.9
Q ss_pred eeeeecCcEEEEEEcCCEEE-EeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCC
Q 047728 105 SLVREEGHIYSLAAAGDLLY-TGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKD 179 (474)
Q Consensus 105 ~l~~h~~~i~~~~~~~~~l~-tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~ 179 (474)
++.+|+..|.+++++.+-++ ..+..+.|+||+.. +++.++... .+.+..|- +.++++|...|.+.++|+.+..
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 57799999999999844333 33336789999854 566666544 66777776 6699999999999999998876
Q ss_pred cceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC-----cce
Q 047728 180 ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD-----YKC 254 (474)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~ 254 (474)
.... ...|.+.|++++.+||+..+++|+.|.+|++||..- +..
T Consensus 446 l~Et--------------------------------i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~ 493 (888)
T KOG0306|consen 446 LVET--------------------------------IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQ 493 (888)
T ss_pred hhhh--------------------------------hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccc
Confidence 5422 234999999999999999999999999999999741 111
Q ss_pred eeeee-------ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE
Q 047728 255 LESVI-------AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC 326 (474)
Q Consensus 255 ~~~~~-------~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 326 (474)
...+. .-.+.|.|+.++||+ +|+++--|.+|+||-+.+.+ +...+.+|.-+|.|+.++||++.+++
T Consensus 494 ~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK------FflsLYGHkLPV~smDIS~DSklivT 567 (888)
T KOG0306|consen 494 KKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK------FFLSLYGHKLPVLSMDISPDSKLIVT 567 (888)
T ss_pred ceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee------eeeeecccccceeEEeccCCcCeEEe
Confidence 11111 235789999999999 89999999999999887543 56788999999999999999999999
Q ss_pred EcCCCcEEEeecCcccccceeeeecceeeEEEE--ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEee
Q 047728 327 GSSDGLVNFWERELNLSHGGVLRGHKLAILCLV--TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK 404 (474)
Q Consensus 327 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~ 404 (474)
|+.|..|++|-++-+.+. ..+.+|...|+++. |....+++++.|+.|+-||-...+ ++..+.+|...|+|++.+|
T Consensus 568 gSADKnVKiWGLdFGDCH-KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe--~iq~L~~H~~ev~cLav~~ 644 (888)
T KOG0306|consen 568 GSADKNVKIWGLDFGDCH-KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE--EIQKLDGHHSEVWCLAVSP 644 (888)
T ss_pred ccCCCceEEeccccchhh-hhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh--hheeeccchheeeeeEEcC
Confidence 999999999999988776 45568888887765 567899999999999999988776 6789999999999999999
Q ss_pred CCccccccceEEEEEecCCCcEEEEEccC
Q 047728 405 DDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 405 ~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
+|. +++++|.|.+|++|....
T Consensus 645 ~G~--------~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 645 NGS--------FVVSSSHDKSIRLWERTD 665 (888)
T ss_pred CCC--------eEEeccCCceeEeeeccC
Confidence 999 999999999999998765
No 68
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1e-28 Score=222.68 Aligned_cols=300 Identities=15% Similarity=0.232 Sum_probs=226.6
Q ss_pred CcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcc------ccccc-cCccCEEEEEec--CCEEEEEeC
Q 047728 98 SPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQRE------FSGFK-SNSGLVKAIVIS--NEKIFSGHQ 166 (474)
Q Consensus 98 ~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~------~~~~~-~h~~~V~~i~~~--~~~l~s~~~ 166 (474)
.|...-..|.+|+..|.+++++ |-.|++|+.|-+|++||.+.. ++.+. .....|.++.|+ ++.|++.+.
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 4555556788999999998877 889999999999999996532 22222 235568888887 788888888
Q ss_pred CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEE
Q 047728 167 DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFK 245 (474)
Q Consensus 167 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~ 245 (474)
....+|+|-+..+...... ...|+.-. ..-.||...++|.+|+| +...+++++.||+++
T Consensus 235 ~aqakl~DRdG~~~~e~~K----------------GDQYI~Dm----~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlR 294 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSK----------------GDQYIRDM----YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLR 294 (641)
T ss_pred CcceeEEccCCceeeeeec----------------cchhhhhh----hccCCceeeeeccccccCcccceEEecCCCcEE
Confidence 8899999988765432111 11121111 11246999999999999 456899999999999
Q ss_pred EEEcCCcce-eeeee-----ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc--cEEEEE
Q 047728 246 VWRTSDYKC-LESVI-----AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC--AVTALA 316 (474)
Q Consensus 246 iwd~~~~~~-~~~~~-----~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~v~~l~ 316 (474)
|||+...+. +..++ +..-+++.++|++++ .|++|+.||.|.+|+........ .......|.. .|+||.
T Consensus 295 iWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p---~~~vk~AH~~g~~Itsi~ 371 (641)
T KOG0772|consen 295 IWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP---VMKVKDAHLPGQDITSIS 371 (641)
T ss_pred EEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc---ceEeeeccCCCCceeEEE
Confidence 999976543 33332 223478899999999 99999999999999985433221 2233344544 899999
Q ss_pred EcCCCCEEEEEcCCCcEEEeecCcccccceee----eecceeeEEEEecCCEEEEEeC------CCcEEEEECCCCceEE
Q 047728 317 ISPDAAIVYCGSSDGLVNFWERELNLSHGGVL----RGHKLAILCLVTAGNLVFSGSA------DMSICIWRRKENEHIC 386 (474)
Q Consensus 317 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~l~sgs~------dg~i~iwd~~~~~~~~ 386 (474)
|+++|++|++-+.|+++++||++..+...... ......-.||+|+.++|++|.. .|.+.+||..+.+ .
T Consensus 372 FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d--~ 449 (641)
T KOG0772|consen 372 FSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD--T 449 (641)
T ss_pred eccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee--e
Confidence 99999999999999999999999876554333 3344566899999999999873 5789999998877 3
Q ss_pred EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728 387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
+..+.-....|..+.|+|.-+ .|+.|+.||.++||=
T Consensus 450 v~ki~i~~aSvv~~~WhpkLN--------Qi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 450 VYKIDISTASVVRCLWHPKLN--------QIFAGSGDGTAHVYY 485 (641)
T ss_pred EEEecCCCceEEEEeecchhh--------heeeecCCCceEEEE
Confidence 556665678899999999988 688888899999873
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.3e-29 Score=207.66 Aligned_cols=233 Identities=21% Similarity=0.253 Sum_probs=200.0
Q ss_pred cCcEEEEEEc---CCEEEEeeCCCcEEEEeCC---ccccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCc
Q 047728 110 EGHIYSLAAA---GDLLYTGSDSKNIRVWKNQ---REFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDA 180 (474)
Q Consensus 110 ~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~---~~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~ 180 (474)
++.+..++++ .+.+++++.||++++||+. .++..++.|...|.++.|+ ++.+++++.|++|++|+...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 4556777776 5689999999999999954 6788999999999999998 66888999999999999887655
Q ss_pred ceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeee
Q 047728 181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVI 259 (474)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 259 (474)
+ .++.+|...|...+|+| ..+++++++.|+++++||++..-....+.
T Consensus 140 v--------------------------------~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ 187 (311)
T KOG0277|consen 140 V--------------------------------QTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE 187 (311)
T ss_pred e--------------------------------EeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE
Confidence 4 24567999999999999 78899999999999999998655455589
Q ss_pred ecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEe
Q 047728 260 AHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFW 336 (474)
Q Consensus 260 ~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~ 336 (474)
.|...+.++.|+.-+ .+++|+.|+.|+.||++.... +...+.+|.-.|+.+.|+| ....|++++.|-++++|
T Consensus 188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-----pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw 262 (311)
T KOG0277|consen 188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-----PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIW 262 (311)
T ss_pred eccceeEeecccccCCcEEEecCCCceEEEEehhhccc-----cceeecCCceEEEEEecCcchhhHhhhccccceEEec
Confidence 999999999998765 899999999999999987654 4667789999999999999 45789999999999999
Q ss_pred ecCcccccceeeeecceeeEEEEe---cCCEEEEEeCCCcEEEEEC
Q 047728 337 ERELNLSHGGVLRGHKLAILCLVT---AGNLVFSGSADMSICIWRR 379 (474)
Q Consensus 337 d~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~sgs~dg~i~iwd~ 379 (474)
|...+.........|...+..+.+ ++.++|+++.|+.++||+.
T Consensus 263 ~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 263 DPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 998776666777778887766654 5889999999999999984
No 70
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3.9e-29 Score=211.90 Aligned_cols=284 Identities=18% Similarity=0.316 Sum_probs=223.7
Q ss_pred eeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--------------------ccccccccCccCEEEEEec--CC
Q 047728 104 GSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--------------------REFSGFKSNSGLVKAIVIS--NE 159 (474)
Q Consensus 104 ~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--------------------~~~~~~~~h~~~V~~i~~~--~~ 159 (474)
..+..|++++.+-+|+ |.++|||+.|-.|+|.|.. ..++++-.|.+.|+++.|+ ..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 4577899998886665 9999999999999999855 1255677899999999999 56
Q ss_pred EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE
Q 047728 160 KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS 239 (474)
Q Consensus 160 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 239 (474)
.|++|+.|++|+++|+.........+. .....+|.+|.|+|.|.+|+.|.
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~------------------------------~qd~~~vrsiSfHPsGefllvgT 235 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKV------------------------------FQDTEPVRSISFHPSGEFLLVGT 235 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHH------------------------------hhccceeeeEeecCCCceEEEec
Confidence 899999999999999987544322211 12556899999999999999999
Q ss_pred CCCcEEEEEcCCcceeeee---eecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeee-ec-ccccEE
Q 047728 240 WDKTFKVWRTSDYKCLESV---IAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL-LK-QECAVT 313 (474)
Q Consensus 240 ~dg~i~iwd~~~~~~~~~~---~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~-~~~~v~ 313 (474)
.-.++++||+++.++...- ..|.+.|+++.+++.+ +.++++.||.|++||--... +..++ .. ....|.
T Consensus 236 dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r------Cv~t~~~AH~gsevc 309 (430)
T KOG0640|consen 236 DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR------CVRTIGNAHGGSEVC 309 (430)
T ss_pred CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH------HHHHHHhhcCCceee
Confidence 9999999999998886654 3588999999999999 89999999999999954322 12222 22 346799
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecc-e-----eeEEEEecCCEEEEEe-CCCcEEEEECCCCceEE
Q 047728 314 ALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK-L-----AILCLVTAGNLVFSGS-ADMSICIWRRKENEHIC 386 (474)
Q Consensus 314 ~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~-----~v~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~~~ 386 (474)
+..|..+++++++.+.|..+++|.+.++..+........ . .-..|.....+++.-. ..+.++-||.++.....
T Consensus 310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA 389 (430)
T ss_pred eEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh
Confidence 999999999999999999999999999877654433211 1 1122333456666554 35789999999887543
Q ss_pred EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
+ .-.+|++++..+.-+|.+. .+++|+.|-.+++|--+
T Consensus 390 l-~slgHn~a~R~i~HSP~~p--------~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 390 L-LSLGHNGAVRWIVHSPVEP--------AFMTCSDDFRARFWYRR 426 (430)
T ss_pred h-cccCCCCCceEEEeCCCCC--------ceeeecccceeeeeeec
Confidence 3 3357999999999999998 89999999999999643
No 71
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-28 Score=204.64 Aligned_cols=282 Identities=18% Similarity=0.204 Sum_probs=218.1
Q ss_pred ccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc
Q 047728 143 GFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF 220 (474)
Q Consensus 143 ~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 220 (474)
.+++|..+++.|.++ |++|++++.|.+..||-..+++.+ +.+.+|+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl--------------------------------Gty~GHt 52 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL--------------------------------GTYDGHT 52 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee--------------------------------eeecCCC
Confidence 467899999999998 899999999999999987766543 5788899
Q ss_pred CCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeC------CCcEEEEEcccCC
Q 047728 221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSA------DGTVKVWRRELQG 294 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~------dg~i~iwd~~~~~ 294 (474)
+.|+|+....+.+.+++|+.|.++++||+++|+++..++. ..+|..+.|++++.++..+. .+.|.++|++...
T Consensus 53 GavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred ceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 9999999999999999999999999999999999999875 77899999999994333333 3579999998543
Q ss_pred Cc-eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCC
Q 047728 295 KG-TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSAD 371 (474)
Q Consensus 295 ~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~d 371 (474)
.. ....+...+..+...++.+-|.|-+.+|++|.+||.|.+||.++++........|...| ++++++..++++++.|
T Consensus 132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKD 211 (327)
T ss_pred hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccC
Confidence 21 12223455566778999999999999999999999999999999877777766676666 5667789999999999
Q ss_pred CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEe-cCCCc-EEEEEccCCCCC-----CCCCccc
Q 047728 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSG-SLDKS-VKMWRVSEQAPP-----LVSTTQQ 444 (474)
Q Consensus 372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~-s~Dg~-i~vw~~~~~~~~-----~~~~~~~ 444 (474)
.+-++||..+.+ ++.++. -..||++.+++|... .++.| +.+.. |.-=+.+.++-. ....+..
T Consensus 212 ttakl~D~~tl~--v~Kty~-te~PvN~aaisP~~d--------~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEi 280 (327)
T KOG0643|consen 212 TTAKLVDVRTLE--VLKTYT-TERPVNTAAISPLLD--------HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEI 280 (327)
T ss_pred ccceeeecccee--eEEEee-ecccccceecccccc--------eEEecCCceeeeeeeecccccchhhhHHHHHHHHHh
Confidence 999999999877 344444 457999999999877 44444 43321 111111111111 1233566
Q ss_pred ccccCCCCCCCccccCCCCCcCCceeec
Q 047728 445 HPLEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 445 ~~~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
..+++|-++|+++ +|+|||+.-.+
T Consensus 281 grvkGHFGPINsv----AfhPdGksYsS 304 (327)
T KOG0643|consen 281 GRVKGHFGPINSV----AFHPDGKSYSS 304 (327)
T ss_pred ccccccccCccee----EECCCCccccc
Confidence 7889999999999 55566655443
No 72
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.5e-28 Score=229.17 Aligned_cols=274 Identities=25% Similarity=0.424 Sum_probs=229.6
Q ss_pred eeeeeeeeecCcEEEEEEc-CCEEEEeeCCCcEEEEeC-Ccc---ccccccCccCEEE-EEec---CCEEEEEeCCCeEE
Q 047728 101 VLIGSLVREEGHIYSLAAA-GDLLYTGSDSKNIRVWKN-QRE---FSGFKSNSGLVKA-IVIS---NEKIFSGHQDGKIR 171 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~-~~~l~tgs~dg~v~vwd~-~~~---~~~~~~h~~~V~~-i~~~---~~~l~s~~~dg~i~ 171 (474)
++-+.+.+|+..|..++.. +..+++++.||++++|+. ++. ...+.+|.+-|.. +++. +.+|++|+.|++|.
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 5667899999999888876 557999999999999984 333 2346777777776 7765 45799999999999
Q ss_pred EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC
Q 047728 172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD 251 (474)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 251 (474)
+|...+.... .++.+|...|.|++...++. +++|++|.++++|. .
T Consensus 85 v~~~~~~~P~--------------------------------~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~ 129 (745)
T KOG0301|consen 85 VFKLSQAEPL--------------------------------YTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--I 129 (745)
T ss_pred EEecCCCCch--------------------------------hhhhccccceeeeecCCcCc-eEecccccceEEec--c
Confidence 9999887654 45678999999999887776 99999999999996 4
Q ss_pred cceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC
Q 047728 252 YKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG 331 (474)
Q Consensus 252 ~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 331 (474)
+++...+.+|...|++++..|++.+++|+.|.+|++|.-.. ...++.+|...|+.+++-+++. +++++.||
T Consensus 130 ~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~--------~l~tf~gHtD~VRgL~vl~~~~-flScsNDg 200 (745)
T KOG0301|consen 130 GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGGT--------LLKTFSGHTDCVRGLAVLDDSH-FLSCSNDG 200 (745)
T ss_pred hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCCc--------hhhhhccchhheeeeEEecCCC-eEeecCCc
Confidence 57778899999999999999999999999999999997532 4678889999999999997654 66788999
Q ss_pred cEEEeecCcccccceeeeecceeeEEEE--ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccc
Q 047728 332 LVNFWERELNLSHGGVLRGHKLAILCLV--TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL 409 (474)
Q Consensus 332 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 409 (474)
.|++|++... .+ ....+|...+.+++ .++..++++++|++++||+.. + +.+.+.--...|+++.+-+++.
T Consensus 201 ~Ir~w~~~ge-~l-~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e--~~q~I~lPttsiWsa~~L~NgD-- 272 (745)
T KOG0301|consen 201 SIRLWDLDGE-VL-LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--E--CVQVITLPTTSIWSAKVLLNGD-- 272 (745)
T ss_pred eEEEEeccCc-ee-eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--c--eEEEEecCccceEEEEEeeCCC--
Confidence 9999999543 33 46678999888887 468899999999999999887 2 5666665556899999999997
Q ss_pred cccceEEEEEecCCCcEEEEEccC
Q 047728 410 SREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 410 ~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
+++|+.||.||||....
T Consensus 273 -------Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 273 -------IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred -------EEEeccCceEEEEEecc
Confidence 89999999999998764
No 73
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.4e-29 Score=221.26 Aligned_cols=294 Identities=23% Similarity=0.354 Sum_probs=232.5
Q ss_pred ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728 141 FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218 (474)
Q Consensus 141 ~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
+.....|.-+|.+++++ +.+.++++.||+|.-|++.++.......... .... ..+......+ .+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-----ev~k-----~~~~~~k~~r----~~ 200 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-----EVLK-----SHGNPLKESR----KG 200 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-----hhhh-----hccCCCCccc----cc
Confidence 55667899999999998 5599999999999999999887542111110 0000 0000011111 26
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCce
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 297 (474)
|...+.+++.++|+++|++|+.|..|.||+.++.+.+..+.+|.+.|.+++|-... .+++++.|+.|++|+++...
T Consensus 201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s--- 277 (479)
T KOG0299|consen 201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS--- 277 (479)
T ss_pred ccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH---
Confidence 99999999999999999999999999999999999999999999999999998665 99999999999999988654
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe-cCCEEEEEeCCCcEEE
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT-AGNLVFSGSADMSICI 376 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sgs~dg~i~i 376 (474)
...++.+|...|..|....-++.+-+|+.|+++++|++... ...++.++...+-|+++ +...+++|+.+|.|.+
T Consensus 278 ---~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In~~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 278 ---YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIAL 352 (479)
T ss_pred ---HHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEecccceeeccCCceEEE
Confidence 36788999999999999988999999999999999999543 34577888888888776 7889999999999999
Q ss_pred EECCCCceEEEEeecC----------CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCccccc
Q 047728 377 WRRKENEHICLSMLTG----------HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHP 446 (474)
Q Consensus 377 wd~~~~~~~~~~~~~~----------h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~ 446 (474)
|++...+++....... +..+|++|+..|... ++++|+.+|.|++|.+.++.... .....
T Consensus 353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd--------L~asGS~~G~vrLW~i~~g~r~i---~~l~~ 421 (479)
T KOG0299|consen 353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD--------LLASGSWSGCVRLWKIEDGLRAI---NLLYS 421 (479)
T ss_pred eeecccCceeEeeccccccCCccccccccceeeeEecccCc--------eEEecCCCCceEEEEecCCcccc---ceeee
Confidence 9999888655433321 123799999999988 99999999999999999985432 23333
Q ss_pred ccCCCCCCCccccCCCCCcCCceeec
Q 047728 447 LEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 447 ~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
+. ..+.|++| +|+++|+.|+.
T Consensus 422 ls-~~GfVNsl----~f~~sgk~iva 442 (479)
T KOG0299|consen 422 LS-LVGFVNSL----AFSNSGKRIVA 442 (479)
T ss_pred cc-cccEEEEE----EEccCCCEEEE
Confidence 33 45568888 67888885543
No 74
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.3e-29 Score=236.55 Aligned_cols=271 Identities=23% Similarity=0.319 Sum_probs=202.3
Q ss_pred cc-cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeee---------------eccc-------------Ccc
Q 047728 144 FK-SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKR---------------VGTL-------------PTF 192 (474)
Q Consensus 144 ~~-~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~---------------~~~~-------------~~~ 192 (474)
+. .|.++|.++.|+ |.|||+|+.||.|+||.+...+...... .... ...
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 44 899999999998 8899999999999999987622110000 0000 000
Q ss_pred ceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecC
Q 047728 193 KDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF 272 (474)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 272 (474)
.....+..-+.....+...+...|.||.+.|.+|.|+.+ ++|++++.|.+|++|++...+|+..| .|.+.|+||+|+|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnP 419 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNP 419 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecc
Confidence 000011122233334455566778999999999999976 58999999999999999999999988 6999999999999
Q ss_pred CC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee--
Q 047728 273 DG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL-- 348 (474)
Q Consensus 273 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-- 348 (474)
-. ++++|+-||.||||++...+ +.....-..-|++++|.|+|+..++|+.+|.+++|+....+......
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~-------Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKK-------VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred cCCCcEeecccccceEEeecCcCe-------eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 76 99999999999999987433 23344445789999999999999999999999999987654332211
Q ss_pred ------eecceeeEEEEe---cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCcc--ceEEEEEeeCCccccccceEEE
Q 047728 349 ------RGHKLAILCLVT---AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG--PVKCLAVEKDDESLSREKRWIL 417 (474)
Q Consensus 349 ------~~~~~~v~~~~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~l 417 (474)
..|. .|+.|.+ +...|++.+.|..|+|||.+... .+..++++.. .-....|+.|++ +|
T Consensus 493 ~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~--lv~KfKG~~n~~SQ~~Asfs~Dgk--------~I 561 (712)
T KOG0283|consen 493 LHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD--LVHKFKGFRNTSSQISASFSSDGK--------HI 561 (712)
T ss_pred eccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh--hhhhhcccccCCcceeeeEccCCC--------EE
Confidence 1122 5666654 34568888999999999998776 3456665433 335677899999 99
Q ss_pred EEecCCCcEEEEEccCC
Q 047728 418 YSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 418 ~s~s~Dg~i~vw~~~~~ 434 (474)
+++++|..|+||++...
T Consensus 562 Vs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 562 VSASEDSWVYIWKNDSF 578 (712)
T ss_pred EEeecCceEEEEeCCCC
Confidence 99999999999998543
No 75
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.5e-28 Score=237.71 Aligned_cols=245 Identities=26% Similarity=0.432 Sum_probs=214.0
Q ss_pred cceeeee-eeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEecCCEEEEEeCCCeEEEE
Q 047728 99 PNVLIGS-LVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVW 173 (474)
Q Consensus 99 ~~~~~~~-l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vw 173 (474)
....+.. +.+|.+.|+++++. +++|++|+.|.+++||| .+.+...+.+|...|.++...+..+++|+.|.+|++|
T Consensus 237 ~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW 316 (537)
T KOG0274|consen 237 NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVW 316 (537)
T ss_pred cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEE
Confidence 3445555 99999999999999 99999999999999999 4577889999999999999999999999999999999
Q ss_pred ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc
Q 047728 174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK 253 (474)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 253 (474)
+++++..+. ++.+|..+|.++.++ +.++++|+.|++|++||+.+++
T Consensus 317 ~v~n~~~l~--------------------------------l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 317 DVTNGACLN--------------------------------LLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK 362 (537)
T ss_pred eccCcceEE--------------------------------EeccccccEEEEEec--CCEEEEEecCceEEEEEhhhce
Confidence 999876642 344599999999997 7899999999999999999999
Q ss_pred eeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728 254 CLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV 333 (474)
Q Consensus 254 ~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 333 (474)
++.++.+|...|.++.+.....+++|+.|++|++||++... .+...+.+|..-+..+.+ .+++|++++.|+.|
T Consensus 363 cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 363 CLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR-----KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTI 435 (537)
T ss_pred eeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchh-----hhhhhhcCCccccccccc--ccceeEeccccccE
Confidence 99999999999999988775699999999999999998763 257788888888855554 57899999999999
Q ss_pred EEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCce
Q 047728 334 NFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEH 384 (474)
Q Consensus 334 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~ 384 (474)
++||...+.........|...+.++......+++++.|+.+++||+++++.
T Consensus 436 k~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 436 KLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred EEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence 999999887775444436788888888778999999999999999998873
No 76
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.1e-27 Score=231.53 Aligned_cols=233 Identities=16% Similarity=0.211 Sum_probs=179.7
Q ss_pred eeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCc-------ceeeeeeecCcceeEEEecCCC--eEEEeeCCCc
Q 047728 215 LWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDY-------KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGT 284 (474)
Q Consensus 215 ~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~ 284 (474)
.+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++ +.+..+.+|...|.+++|+|++ .|++++.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4567999999999999 8899999999999999999764 3567788999999999999975 8999999999
Q ss_pred EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeeccee---eEEEEec
Q 047728 285 VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLA---ILCLVTA 361 (474)
Q Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~---v~~~~~~ 361 (474)
|+|||++... ....+..|...|.+++|+|++.+|++++.|+.|++||++++... ..+.+|... ...+.++
T Consensus 150 VrIWDl~tg~------~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v-~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 150 VNVWDVERGK------AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV-SSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred EEEEECCCCe------EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE-EEEecCCCCcceEEEEcCC
Confidence 9999998643 24556678899999999999999999999999999999987654 344566543 2445566
Q ss_pred CCEEEEEe----CCCcEEEEECCCCceEEEEeecC-CccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEccCCC
Q 047728 362 GNLVFSGS----ADMSICIWRRKENEHICLSMLTG-HSGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRVSEQA 435 (474)
Q Consensus 362 ~~~l~sgs----~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~~~ 435 (474)
+..+++++ .|+.|++||+++.... +..... +...+....|++++. +|++++ .|+.|++|++.++.
T Consensus 223 ~~~ivt~G~s~s~Dr~VklWDlr~~~~p-~~~~~~d~~~~~~~~~~d~d~~--------~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 223 KDLIITLGCSKSQQRQIMLWDTRKMASP-YSTVDLDQSSALFIPFFDEDTN--------LLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCeEEEEecCCCCCCeEEEEeCCCCCCc-eeEeccCCCCceEEEEEcCCCC--------EEEEEEeCCCeEEEEEeeCCc
Confidence 66776654 4799999999875432 333332 334566677889988 777777 59999999998874
Q ss_pred CCCCCCcccccccCCCCCCCccccCCCCCcCCce
Q 047728 436 PPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRI 469 (474)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~ 469 (474)
.... .-..+...+.+++|.|.+..|-+-
T Consensus 294 ~~~~------~~~~s~~~~~g~~~~pk~~~dv~~ 321 (493)
T PTZ00421 294 LTFC------SSYSSVEPHKGLCMMPKWSLDTRK 321 (493)
T ss_pred eEEE------eeccCCCCCcceEecccccccccc
Confidence 3211 111244567888888887776543
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3e-28 Score=238.55 Aligned_cols=301 Identities=19% Similarity=0.252 Sum_probs=227.7
Q ss_pred cCcEEEEE--EcCCEEEEee--CCCcEEEEeC--------------CccccccccCccCEEEEEec--CCEEEEEeCCCe
Q 047728 110 EGHIYSLA--AAGDLLYTGS--DSKNIRVWKN--------------QREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGK 169 (474)
Q Consensus 110 ~~~i~~~~--~~~~~l~tgs--~dg~v~vwd~--------------~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~ 169 (474)
+..|.+++ ++|..++||+ .||.++||+. .+.+.....|.+.|+|+.|+ +.+||+|+.|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 45577766 5588999999 8999999952 23456678899999999998 779999999999
Q ss_pred EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728 170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT 249 (474)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~ 249 (474)
|.||+.........+.. ...............+.+|...|.+++|+|++.+|++++.|++|.|||.
T Consensus 93 v~iW~~~~~~~~~~fgs--------------~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGS--------------TGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNA 158 (942)
T ss_pred EEEeeecccCCcccccc--------------cccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcc
Confidence 99999875111000000 0000011112233567789999999999999999999999999999999
Q ss_pred CCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728 250 SDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS 328 (474)
Q Consensus 250 ~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 328 (474)
.+++.+..+.+|...|..+.|.|-| +|++-+.|++|++|++..-+.................+..+.|+|||.+|++..
T Consensus 159 ~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 159 KTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999999999999999 999999999999999654222111111111122345688999999999999864
Q ss_pred C----CCcEEEeecCcccccceeeeecceeeEEEEec-------CC------------EEEEEeCCCcEEEEECCCCceE
Q 047728 329 S----DGLVNFWERELNLSHGGVLRGHKLAILCLVTA-------GN------------LVFSGSADMSICIWRRKENEHI 385 (474)
Q Consensus 329 ~----dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~-------~~------------~l~sgs~dg~i~iwd~~~~~~~ 385 (474)
. -.++.|.+..+. .....+.+|..++.++.++ .+ .+|+|+.|++|.||.....++.
T Consensus 239 A~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred hccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 3 336778776443 3446677898888777653 11 6889999999999999766643
Q ss_pred EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 386 CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 386 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+....-....|.+++|+|||. .|+.+|.||+|.+..+++.
T Consensus 318 -~vi~~lf~~SI~DmsWspdG~--------~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 318 -FVIHNLFNKSIVDMSWSPDGF--------SLFACSLDGTVALIHFEEK 357 (942)
T ss_pred -hhhhhhhcCceeeeeEcCCCC--------eEEEEecCCeEEEEEcchH
Confidence 223334567899999999999 8999999999999999764
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.4e-28 Score=216.99 Aligned_cols=275 Identities=21% Similarity=0.308 Sum_probs=223.3
Q ss_pred eeecCcEEEEEEcC----CEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCC
Q 047728 107 VREEGHIYSLAAAG----DLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSK 178 (474)
Q Consensus 107 ~~h~~~i~~~~~~~----~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~ 178 (474)
......|.+++|+. ++.+|+|. .|.||+.. .....+......|.++.|. |..|++|+..|.|+|+|..+.
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccccCcceeEecCCCCCCceEEeccc--EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 34456799999884 45555543 48888744 4455566677889999997 889999999999999996553
Q ss_pred CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeee
Q 047728 179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLES 257 (474)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~ 257 (474)
..+ ..+.+|+.+|..+.|+| ++..|++|++|+.+++||+.+......
T Consensus 101 ~iL--------------------------------R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~ 148 (487)
T KOG0310|consen 101 VIL--------------------------------RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE 148 (487)
T ss_pred HHH--------------------------------HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE
Confidence 222 23456999999999999 567788999999999999999887778
Q ss_pred eeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEE
Q 047728 258 VIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335 (474)
Q Consensus 258 ~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v 335 (474)
+.+|++.|.|.+++|.. ++++|+.||.|++||++.... ......|..+|..+.+-|.|..+++++. ..|++
T Consensus 149 l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~------~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkV 221 (487)
T KOG0310|consen 149 LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS------RVVELNHGCPVESVLALPSGSLIASAGG-NSVKV 221 (487)
T ss_pred ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc------eeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEE
Confidence 99999999999999986 899999999999999987642 3556789999999999999999998764 57999
Q ss_pred eecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccc
Q 047728 336 WERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREK 413 (474)
Q Consensus 336 ~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 413 (474)
||+.++.........|...|+|+.. ++..|++|+-|+.+++||+.+.+ .+..+. ..++|.+++.+|+++
T Consensus 222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K--vv~s~~-~~~pvLsiavs~dd~------ 292 (487)
T KOG0310|consen 222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK--VVHSWK-YPGPVLSIAVSPDDQ------ 292 (487)
T ss_pred EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceE--EEEeee-cccceeeEEecCCCc------
Confidence 9999776666666668888888766 56999999999999999977766 334443 568999999999998
Q ss_pred eEEEEEecCCCcEEEEEccC
Q 047728 414 RWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 414 ~~~l~s~s~Dg~i~vw~~~~ 433 (474)
.++.|..||.+.+=+...
T Consensus 293 --t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 293 --TVVIGMSNGLVSIRRREV 310 (487)
T ss_pred --eEEEecccceeeeehhhc
Confidence 899999999887775443
No 79
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.6e-28 Score=217.36 Aligned_cols=270 Identities=19% Similarity=0.269 Sum_probs=217.7
Q ss_pred cceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCc------------cccccccCccCEEEEEec---CCE
Q 047728 99 PNVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQR------------EFSGFKSNSGLVKAIVIS---NEK 160 (474)
Q Consensus 99 ~~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~------------~~~~~~~h~~~V~~i~~~---~~~ 160 (474)
....+.....|.+.|+.+..- ..++|+++..+.|.|||..+ +-..+.+|.+.=.+++|+ ...
T Consensus 113 ~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~ 192 (422)
T KOG0264|consen 113 GKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGT 192 (422)
T ss_pred cceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccccee
Confidence 345556667899999987754 66899999999999998431 112678898888889998 568
Q ss_pred EEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEE
Q 047728 161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSAS 239 (474)
Q Consensus 161 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s 239 (474)
|++++.|++|++||+......... ......+.+|.+.|..++|++ +..+|++++
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~-------------------------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKV-------------------------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred EeeccCCCcEEEEeccccccCCcc-------------------------ccceEEeecCCcceehhhccccchhhheeec
Confidence 999999999999999876542000 011245677999999999999 678899999
Q ss_pred CCCcEEEEEcC--CcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728 240 WDKTFKVWRTS--DYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL 315 (474)
Q Consensus 240 ~dg~i~iwd~~--~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 315 (474)
.|+.+.|||++ +.++.....+|...|+|++|+|-+ .||+|+.|++|.+||+|.... ....+.+|+..|.++
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-----~lh~~e~H~dev~~V 322 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-----PLHTFEGHEDEVFQV 322 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-----CceeccCCCcceEEE
Confidence 99999999999 566777888999999999999987 899999999999999997665 578889999999999
Q ss_pred EEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCc
Q 047728 316 AISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHS 394 (474)
Q Consensus 316 ~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~ 394 (474)
.|+| ....|++++.|+.+.+||+..-....... |...+.+.+++.-.||.
T Consensus 323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e-----------------------------da~dgppEllF~HgGH~ 373 (422)
T KOG0264|consen 323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE-----------------------------DAEDGPPELLFIHGGHT 373 (422)
T ss_pred EeCCCCCceeEecccCCcEEEEeccccccccChh-----------------------------hhccCCcceeEEecCcc
Confidence 9999 56788999999999999987432221100 12233444577888999
Q ss_pred cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 395 GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
..|..+.|+|.... .++|.++|+.+.||++...
T Consensus 374 ~kV~DfsWnp~ePW-------~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 374 AKVSDFSWNPNEPW-------TIASVAEDNILQIWQMAEN 406 (422)
T ss_pred cccccccCCCCCCe-------EEEEecCCceEEEeecccc
Confidence 99999999999874 8999999999999999753
No 80
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=7.6e-28 Score=203.51 Aligned_cols=274 Identities=18% Similarity=0.208 Sum_probs=207.6
Q ss_pred ccccccCccCEEEEEecC---CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 141 FSGFKSNSGLVKAIVISN---EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 141 ~~~~~~h~~~V~~i~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
+..-..-.+.|.+|+|++ ..+++++.||+||+|+++.......+ ...
T Consensus 20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k------------------------------a~~ 69 (347)
T KOG0647|consen 20 YEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK------------------------------AQQ 69 (347)
T ss_pred eecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccch------------------------------hhh
Confidence 333444677899999984 46779999999999999874221111 123
Q ss_pred eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC---eEEEeeCCCcEEEEEcccCC
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG---LVFTGSADGTVKVWRRELQG 294 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~---~l~~~~~dg~i~iwd~~~~~ 294 (474)
.|.++|.+++|+.+|..+++|+.|+.+++||+.++ .+..+..|..+|..+.|-+.. .|++|+.|.+|+.||.+...
T Consensus 70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred ccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence 49999999999999999999999999999999998 566778999999999998765 78999999999999999654
Q ss_pred CceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee---eecceeeEEEEecCCEEEEEeCC
Q 047728 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL---RGHKLAILCLVTAGNLVFSGSAD 371 (474)
Q Consensus 295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~l~sgs~d 371 (474)
.. ......+.+.++.. ...+++++..+..|.+|+++++....... ..+....+++..+.+..+.|+.+
T Consensus 149 pv-------~t~~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 149 PV-------ATLQLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred ee-------eeeeccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 31 12222334444433 45688889999999999997764332221 23344455566677777999999
Q ss_pred CcEEEEECCCCceEEEEeecCCcc---------ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCc
Q 047728 372 MSICIWRRKENEHICLSMLTGHSG---------PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTT 442 (474)
Q Consensus 372 g~i~iwd~~~~~~~~~~~~~~h~~---------~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~ 442 (474)
|.+-|..+.......-..++.|.. +|++|+|+|... .|+|+|.||++.+||-... .
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg--------tlvTaGsDGtf~FWDkdar-------~ 284 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG--------TLVTAGSDGTFSFWDKDAR-------T 284 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc--------eEEEecCCceEEEecchhh-------h
Confidence 999999998753333456666652 588999999888 8999999999999998765 3
Q ss_pred ccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728 443 QQHPLEGHGVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 443 ~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
.+...+.|..+|++. +|+.+|.+.+.+
T Consensus 285 kLk~s~~~~qpItcc----~fn~~G~ifaYA 311 (347)
T KOG0647|consen 285 KLKTSETHPQPITCC----SFNRNGSIFAYA 311 (347)
T ss_pred hhhccCcCCCcccee----EecCCCCEEEEE
Confidence 344455678888888 788889888764
No 81
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=7.8e-29 Score=211.30 Aligned_cols=275 Identities=20% Similarity=0.270 Sum_probs=226.9
Q ss_pred CccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728 147 NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS 224 (474)
Q Consensus 147 h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 224 (474)
....+.|..|+ +++|++|+.||.|.+|+..+++.....+.... ..+.-+.++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq------------------------d~fMMmd~aVl 267 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ------------------------DNFMMMDDAVL 267 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh------------------------cceeecccceE
Confidence 45567788887 77999999999999999999876543332211 23445899999
Q ss_pred EEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee-ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728 225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI-AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS 302 (474)
Q Consensus 225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 302 (474)
|++|+.|...|++|+.||.|++|.+++|.|++.+. +|...|+|+.|+.|+ .+++++.|.++++.-+..++ +.
T Consensus 268 ci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK------~L 341 (508)
T KOG0275|consen 268 CISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK------CL 341 (508)
T ss_pred EEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch------hH
Confidence 99999999999999999999999999999999997 899999999999999 99999999999999888665 47
Q ss_pred eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee-ecceeeEEEE---ecCCEEEEEeCCCcEEEEE
Q 047728 303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR-GHKLAILCLV---TAGNLVFSGSADMSICIWR 378 (474)
Q Consensus 303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~~v~~~~---~~~~~l~sgs~dg~i~iwd 378 (474)
..+.+|.+.|+...|.++|..+++++.||+|++|+..+..+...+.. +...++..+. .+...++++...++|.|-+
T Consensus 342 KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn 421 (508)
T KOG0275|consen 342 KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN 421 (508)
T ss_pred HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence 78899999999999999999999999999999999998877654433 3334444443 2577899999999999999
Q ss_pred CCCCceEEEEeec---CCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCC
Q 047728 379 RKENEHICLSMLT---GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPN 455 (474)
Q Consensus 379 ~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~ 455 (474)
+...- +..+. ...+...+.+++|.|. ++++.++|+.++.|.+.++ ...+.+..|...+-
T Consensus 422 ~qGQv---VrsfsSGkREgGdFi~~~lSpkGe--------wiYcigED~vlYCF~~~sG-------~LE~tl~VhEkdvI 483 (508)
T KOG0275|consen 422 MQGQV---VRSFSSGKREGGDFINAILSPKGE--------WIYCIGEDGVLYCFSVLSG-------KLERTLPVHEKDVI 483 (508)
T ss_pred ccceE---EeeeccCCccCCceEEEEecCCCc--------EEEEEccCcEEEEEEeecC-------ceeeeeeccccccc
Confidence 87542 33332 2345677888999999 9999999999999999998 55667778888888
Q ss_pred ccccCC------CCCcCCce
Q 047728 456 SLPYAP------SFSSQGRI 469 (474)
Q Consensus 456 ~l~~~p------~~s~Dg~~ 469 (474)
.++-+| +||.||-+
T Consensus 484 Gl~HHPHqNllAsYsEDgll 503 (508)
T KOG0275|consen 484 GLTHHPHQNLLASYSEDGLL 503 (508)
T ss_pred ccccCcccchhhhhcccchh
Confidence 888887 67888854
No 82
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=2.5e-27 Score=228.96 Aligned_cols=233 Identities=18% Similarity=0.214 Sum_probs=178.0
Q ss_pred ccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728 143 GFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH 219 (474)
Q Consensus 143 ~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 219 (474)
.+.+|.+.|.+++|+ +++|++|+.|++|++||+......... ......+.+|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~-------------------------~~~l~~L~gH 124 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI-------------------------SDPIVHLQGH 124 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc-------------------------CcceEEecCC
Confidence 477899999999997 458999999999999999765321000 0011245679
Q ss_pred cCCeeEEEecCCC-CEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCce
Q 047728 220 FDAISSLSMSEDQ-NLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 220 ~~~V~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 297 (474)
...|.+++|+|++ ++|++++.|++|+|||+++++.+..+..|...|.+++|++++ .|++++.|+.|++||++.+..
T Consensus 125 ~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-- 202 (493)
T PTZ00421 125 TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-- 202 (493)
T ss_pred CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE--
Confidence 9999999999975 799999999999999999999999999999999999999999 899999999999999986542
Q ss_pred eeeeeeeeeccccc-EEEEEEcCCCCEEEEEc----CCCcEEEeecCcccccceeeeecc-ee--eEEEEecCCEEEEEe
Q 047728 298 KHFFSQTLLKQECA-VTALAISPDAAIVYCGS----SDGLVNFWERELNLSHGGVLRGHK-LA--ILCLVTAGNLVFSGS 369 (474)
Q Consensus 298 ~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~----~dg~i~v~d~~~~~~~~~~~~~~~-~~--v~~~~~~~~~l~sgs 369 (474)
...+..|... +..+.|.+++..+++++ .|+.|++||+++..........+. .. ...+++++++|++|+
T Consensus 203 ----v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 203 ----VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred ----EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 3445556543 45678888877777654 478999999987654433332222 22 234567889998887
Q ss_pred -CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728 370 -ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 370 -~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
.|+.|++||+.+++...... ..+..++.+++|.|...
T Consensus 279 kgDg~Iriwdl~~~~~~~~~~-~~s~~~~~g~~~~pk~~ 316 (493)
T PTZ00421 279 KGEGNIRCFELMNERLTFCSS-YSSVEPHKGLCMMPKWS 316 (493)
T ss_pred eCCCeEEEEEeeCCceEEEee-ccCCCCCcceEeccccc
Confidence 59999999999887543222 23566788999998643
No 83
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.5e-27 Score=200.34 Aligned_cols=257 Identities=20% Similarity=0.304 Sum_probs=203.4
Q ss_pred cCcEEEEEEc---CCEEEEeeCCCcEEEEeCCcc----ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCc
Q 047728 110 EGHIYSLAAA---GDLLYTGSDSKNIRVWKNQRE----FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDA 180 (474)
Q Consensus 110 ~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~~----~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~ 180 (474)
++.|.+++|+ ..+++.||.||+||+|+.+.. -+....|.++|.+++|+ +..+++|+.|+.+++||+.+++.
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence 4567777776 457889999999999996642 24556799999999998 77999999999999999999865
Q ss_pred ceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCC--EEEEEECCCcEEEEEcCCcceeeee
Q 047728 181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQN--LLYSASWDKTFKVWRTSDYKCLESV 258 (474)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~dg~i~iwd~~~~~~~~~~ 258 (474)
.. ...|..+|.++.|-+... .|++|++|++|+.||++...++.++
T Consensus 107 ~~---------------------------------v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~ 153 (347)
T KOG0647|consen 107 SQ---------------------------------VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL 153 (347)
T ss_pred ee---------------------------------eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence 42 223999999999988654 8999999999999999999988888
Q ss_pred eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728 259 IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER 338 (474)
Q Consensus 259 ~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~ 338 (474)
.. .+.++++..-. .+++++..+..|.+|+++.+....+ .......-.++|++..++....+.|+-+|.+.+..+
T Consensus 154 ~L-PeRvYa~Dv~~-pm~vVata~r~i~vynL~n~~te~k----~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~i 227 (347)
T KOG0647|consen 154 QL-PERVYAADVLY-PMAVVATAERHIAVYNLENPPTEFK----RIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYI 227 (347)
T ss_pred ec-cceeeehhccC-ceeEEEecCCcEEEEEcCCCcchhh----hhcCcccceeeEEEEEecCCceEeeeecceEEEEec
Confidence 65 56677765542 3899999999999999976544221 111223456899999998888899999999999887
Q ss_pred Ccc-cccceeeeecce-----------eeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728 339 ELN-LSHGGVLRGHKL-----------AILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD 406 (474)
Q Consensus 339 ~~~-~~~~~~~~~~~~-----------~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 406 (474)
..+ ......++.|+. .-++|.|.-..|++++.||++.+||-+... .+.....|..+|++.+|+.+|
T Consensus 228 d~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~--kLk~s~~~~qpItcc~fn~~G 305 (347)
T KOG0647|consen 228 DDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART--KLKTSETHPQPITCCSFNRNG 305 (347)
T ss_pred CCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh--hhhccCcCCCccceeEecCCC
Confidence 764 233345566652 125677788899999999999999987665 466778899999999999999
Q ss_pred c
Q 047728 407 E 407 (474)
Q Consensus 407 ~ 407 (474)
.
T Consensus 306 ~ 306 (347)
T KOG0647|consen 306 S 306 (347)
T ss_pred C
Confidence 8
No 84
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=9.9e-27 Score=225.77 Aligned_cols=250 Identities=13% Similarity=0.188 Sum_probs=185.6
Q ss_pred eeCCCcEEEEeCC--ccccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeec
Q 047728 126 GSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSM 200 (474)
Q Consensus 126 gs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (474)
|+.++.|++|+.. ..+..+.+|.+.|.+++|+ +++|++|+.||+|+|||+..+...... .
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~-i-------------- 114 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE-I-------------- 114 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc-c--------------
Confidence 6678999999854 3566788999999999998 458999999999999999864321000 0
Q ss_pred CCCCeEEEeeeccceeeeccCCeeEEEecCCCCE-EEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEE
Q 047728 201 KPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNL-LYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFT 278 (474)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~ 278 (474)
......+.+|...|.+++|+|++.. |++++.|++|+|||+++++.+..+. |...|.+++|+++| +|++
T Consensus 115 ---------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 115 ---------KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred ---------ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEE
Confidence 0011234569999999999998865 5789999999999999998877775 56789999999999 8888
Q ss_pred eeCCCcEEEEEcccCCCceeeeeeeeeecccccEEE-----EEEcCCCCEEEEEcCCC----cEEEeecCcccccceeee
Q 047728 279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTA-----LAISPDAAIVYCGSSDG----LVNFWERELNLSHGGVLR 349 (474)
Q Consensus 279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-----l~~~~~~~~l~~~~~dg----~i~v~d~~~~~~~~~~~~ 349 (474)
++.|+.|+|||++.+.. ...+..|.+.+.. ..|++++.+|++++.|+ .|++||++..........
T Consensus 185 ~s~D~~IrIwD~Rsg~~------i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ 258 (568)
T PTZ00420 185 TCVGKHMHIIDPRKQEI------ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS 258 (568)
T ss_pred EecCCEEEEEECCCCcE------EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE
Confidence 89999999999986542 3455667665433 34568889999877764 799999986433333322
Q ss_pred e--cceeeE-EEEe-cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728 350 G--HKLAIL-CLVT-AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 350 ~--~~~~v~-~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
. +...++ .+.+ ++.++++|+.|+.|++|++..+....+..+. +..++.+++|.|...
T Consensus 259 ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 259 IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQI 319 (568)
T ss_pred ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEccccc
Confidence 1 222221 2222 4889999999999999999877544343333 678899999999754
No 85
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1e-26 Score=225.73 Aligned_cols=244 Identities=15% Similarity=0.138 Sum_probs=179.1
Q ss_pred EeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCC
Q 047728 164 GHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDK 242 (474)
Q Consensus 164 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg 242 (474)
|+.++.|++|+....... ..+.+|...|.+++|+|+ +.+|++|+.|+
T Consensus 50 GG~~gvI~L~~~~r~~~v--------------------------------~~L~gH~~~V~~lafsP~~~~lLASgS~Dg 97 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV--------------------------------IKLKGHTSSILDLQFNPCFSEILASGSEDL 97 (568)
T ss_pred CCceeEEEeeecCCCceE--------------------------------EEEcCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 667788999987654221 234569999999999996 78999999999
Q ss_pred cEEEEEcCCcc--------eeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccE
Q 047728 243 TFKVWRTSDYK--------CLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAV 312 (474)
Q Consensus 243 ~i~iwd~~~~~--------~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 312 (474)
+|++||+.++. ++..+.+|...|.+++|+|++ .+++++.|+.|++||++.... ...+ .+...|
T Consensus 98 tIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~------~~~i-~~~~~V 170 (568)
T PTZ00420 98 TIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR------AFQI-NMPKKL 170 (568)
T ss_pred eEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE------EEEE-ecCCcE
Confidence 99999997642 344678899999999999988 567899999999999986542 1122 245679
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--E-----EEEecCCEEEEEeCCC----cEEEEECCC
Q 047728 313 TALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--L-----CLVTAGNLVFSGSADM----SICIWRRKE 381 (474)
Q Consensus 313 ~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~-----~~~~~~~~l~sgs~dg----~i~iwd~~~ 381 (474)
.+++|+|+|.+|++++.|+.|++||++++... ..+.+|...+ . .+++++.+|++++.|+ +|+|||++.
T Consensus 171 ~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 171 SSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEEEECCCCCEEEEEecCCEEEEEECCCCcEE-EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 99999999999999999999999999987665 4456776542 1 2336788999888764 799999985
Q ss_pred -CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccC
Q 047728 382 -NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYA 460 (474)
Q Consensus 382 -~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 460 (474)
.+......+..+.+.+......+++. ++++|+.|+.|++|++..+... .+... .+..+..+++|.
T Consensus 250 ~~~pl~~~~ld~~~~~L~p~~D~~tg~--------l~lsGkGD~tIr~~e~~~~~~~-----~l~~~-~s~~p~~g~~f~ 315 (568)
T PTZ00420 250 TTSALVTMSIDNASAPLIPHYDESTGL--------IYLIGKGDGNCRYYQHSLGSIR-----KVNEY-KSCSPFRSFGFL 315 (568)
T ss_pred CCCceEEEEecCCccceEEeeeCCCCC--------EEEEEECCCeEEEEEccCCcEE-----eeccc-ccCCCccceEEc
Confidence 44333333444444444444445566 8999999999999999765211 11121 145566777666
Q ss_pred C
Q 047728 461 P 461 (474)
Q Consensus 461 p 461 (474)
|
T Consensus 316 P 316 (568)
T PTZ00420 316 P 316 (568)
T ss_pred c
Confidence 6
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.9e-27 Score=197.11 Aligned_cols=264 Identities=18% Similarity=0.301 Sum_probs=217.1
Q ss_pred cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728 142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH 219 (474)
Q Consensus 142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 219 (474)
..+++|.+.|.+++|+ |.+|++|+.|+++++|+++....... -.+.+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~------------------------------~~~~gh 63 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE------------------------------LVYRGH 63 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh------------------------------hcccCC
Confidence 4567899999999998 88999999999999999987733211 234569
Q ss_pred cCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCce
Q 047728 220 FDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 220 ~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 297 (474)
.+.|-.++|+| ...+|++++.|.+|++||++.++++..+....+.+ -+.|+|+| ++++++.|..|...|.+....
T Consensus 64 ~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~-- 140 (313)
T KOG1407|consen 64 TDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKI-- 140 (313)
T ss_pred CcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccce--
Confidence 99999999998 66899999999999999999999999887655554 56788888 999999999999999886543
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEE--ecCCEEEEEeCCCcEE
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLV--TAGNLVFSGSADMSIC 375 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sgs~dg~i~ 375 (474)
.........+..++|+-++.+++.....|+|.|.....- ...+.+..|...++|+. |+|+++|+|+.|-.+.
T Consensus 141 -----~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlvS 214 (313)
T KOG1407|consen 141 -----VNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS 214 (313)
T ss_pred -----eehhcccceeeeeeecCCCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeeccccceee
Confidence 233344556888999988888888888899999877644 34467889998887765 5799999999999999
Q ss_pred EEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCC
Q 047728 376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPN 455 (474)
Q Consensus 376 iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~ 455 (474)
+||++.. +|+..+..+.-+|..+.|+.+++ +||+||+|..|-|=+++++.... .+ .+.++..
T Consensus 215 LWD~~EL--iC~R~isRldwpVRTlSFS~dg~--------~lASaSEDh~IDIA~vetGd~~~-------eI-~~~~~t~ 276 (313)
T KOG1407|consen 215 LWDVDEL--ICERCISRLDWPVRTLSFSHDGR--------MLASASEDHFIDIAEVETGDRVW-------EI-PCEGPTF 276 (313)
T ss_pred ccChhHh--hhheeeccccCceEEEEeccCcc--------eeeccCccceEEeEecccCCeEE-------Ee-eccCCce
Confidence 9999754 48889999999999999999999 99999999999999999984332 22 2556778
Q ss_pred ccccCCC
Q 047728 456 SLPYAPS 462 (474)
Q Consensus 456 ~l~~~p~ 462 (474)
.++|||.
T Consensus 277 tVAWHPk 283 (313)
T KOG1407|consen 277 TVAWHPK 283 (313)
T ss_pred eEEecCC
Confidence 8888883
No 87
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=8.5e-29 Score=203.76 Aligned_cols=272 Identities=17% Similarity=0.203 Sum_probs=233.6
Q ss_pred ccccCccCEEEEEec-----CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 143 GFKSNSGLVKAIVIS-----NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 143 ~~~~h~~~V~~i~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
...+|+.+|..++|+ +-.|++++.||.-.+-+=+++..+ ++|.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi--------------------------------gtfe 56 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI--------------------------------GTFE 56 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE--------------------------------Eeee
Confidence 456899999999998 447899999998777666666543 5678
Q ss_pred eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
+|.++|++.+++.+....++++.|-+-++||.-+|..+.++ .|..-|.+++|+.|. .|++|+.+..+||||++....
T Consensus 57 ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A- 134 (334)
T KOG0278|consen 57 GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA- 134 (334)
T ss_pred ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCC-
Confidence 89999999999999889999999999999999999999888 588999999999998 999999999999999986654
Q ss_pred eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEE
Q 047728 297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICI 376 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~i 376 (474)
+.....+|.+.|..+.|....+.|++...|++|++||.+++.....+...+....+.++.+|++|.++. .+.|.+
T Consensus 135 ----pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~F 209 (334)
T KOG0278|consen 135 ----PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKF 209 (334)
T ss_pred ----CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEE
Confidence 466778999999999999999999999999999999999999998888888888899999999887765 568999
Q ss_pred EECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCc
Q 047728 377 WRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNS 456 (474)
Q Consensus 377 wd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~ 456 (474)
||..+...+ .... -...|.+..++|+.. ++++|++|..++.||..++..... ...+|-++|-+
T Consensus 210 wdaksf~~l--Ks~k-~P~nV~SASL~P~k~--------~fVaGged~~~~kfDy~TgeEi~~------~nkgh~gpVhc 272 (334)
T KOG0278|consen 210 WDAKSFGLL--KSYK-MPCNVESASLHPKKE--------FFVAGGEDFKVYKFDYNTGEEIGS------YNKGHFGPVHC 272 (334)
T ss_pred eccccccce--eecc-CccccccccccCCCc--------eEEecCcceEEEEEeccCCceeee------cccCCCCceEE
Confidence 999887633 2222 345689999999998 999999999999999999854432 25789999999
Q ss_pred cccCCCCCcCCceeeccC
Q 047728 457 LPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 457 l~~~p~~s~Dg~~l~~~s 474 (474)
+ .|||||.+.+++|
T Consensus 273 V----rFSPdGE~yAsGS 286 (334)
T KOG0278|consen 273 V----RFSPDGELYASGS 286 (334)
T ss_pred E----EECCCCceeeccC
Confidence 9 7888888888876
No 88
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.1e-27 Score=217.80 Aligned_cols=264 Identities=21% Similarity=0.360 Sum_probs=219.5
Q ss_pred CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCcccee
Q 047728 120 GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDF 195 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 195 (474)
.+.||+|.. ..|++|+.. +.......+...|+++.|+ |.+|++|..+|.|.|||....+.....
T Consensus 188 ~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~----------- 255 (484)
T KOG0305|consen 188 ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL----------- 255 (484)
T ss_pred CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc-----------
Confidence 557777764 469999843 2233333348899999998 889999999999999999877654322
Q ss_pred eeeecCCCCeEEEeeeccceeee-ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee-eeecCcceeEEEecCC
Q 047728 196 IKCSMKPSNYIEVRRHRNGLWIK-HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES-VIAHDDAVNSIVAGFD 273 (474)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~~~ 273 (474)
.+ |...|-+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|
T Consensus 256 ---------------------~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d 312 (484)
T KOG0305|consen 256 ---------------------RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD 312 (484)
T ss_pred ---------------------cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC
Confidence 23 88999999998 67899999999999999998776655 8899999999999999
Q ss_pred C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEE--cCCCcEEEeecCcccccceeee
Q 047728 274 G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCG--SSDGLVNFWERELNLSHGGVLR 349 (474)
Q Consensus 274 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~--~~dg~i~v~d~~~~~~~~~~~~ 349 (474)
+ ++++|+.|+.+.|||..... +...+..|...|.+++|+| ...+||+| +.|++|++||..++..+..+..
T Consensus 313 ~~~lASGgnDN~~~Iwd~~~~~------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGLSPE------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred CCeeccCCCccceEeccCCCcc------ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc
Confidence 9 99999999999999985433 4678889999999999999 67788886 4699999999999888877766
Q ss_pred ecceeeEEEEecCCEEEE--EeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEE
Q 047728 350 GHKLAILCLVTAGNLVFS--GSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVK 427 (474)
Q Consensus 350 ~~~~~v~~~~~~~~~l~s--gs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~ 427 (474)
+....-+.+++..+-|++ |..++.|.||+..+.+ .+..+.+|...|..++++||+. .+++|+.|.+++
T Consensus 387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~--~~~~l~gH~~RVl~la~SPdg~--------~i~t~a~DETlr 456 (484)
T KOG0305|consen 387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK--LVAELLGHTSRVLYLALSPDGE--------TIVTGAADETLR 456 (484)
T ss_pred CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc--eeeeecCCcceeEEEEECCCCC--------EEEEecccCcEE
Confidence 666666667776655554 4467899999998866 5788999999999999999999 899999999999
Q ss_pred EEEccCC
Q 047728 428 MWRVSEQ 434 (474)
Q Consensus 428 vw~~~~~ 434 (474)
+|++-..
T Consensus 457 fw~~f~~ 463 (484)
T KOG0305|consen 457 FWNLFDE 463 (484)
T ss_pred eccccCC
Confidence 9999875
No 89
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=215.60 Aligned_cols=286 Identities=18% Similarity=0.261 Sum_probs=216.8
Q ss_pred cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728 142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH 219 (474)
Q Consensus 142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 219 (474)
..+++|+..|.+++++ |-+|++|+.|.+|++||+......... ++. +....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-------fr~--------------------l~P~E 213 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-------FRQ--------------------LQPCE 213 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh-------hhc--------------------cCccc
Confidence 4567899999999998 779999999999999999876543211 111 11125
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee------------eeecCcceeEEEecCCC--eEEEeeCCCcE
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES------------VIAHDDAVNSIVAGFDG--LVFTGSADGTV 285 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~------------~~~~~~~v~~v~~~~~~--~l~~~~~dg~i 285 (474)
...|+++.|++.+..|++.+.....+|+|-...+.+.. -++|...++|.+|+|+. .+++++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 56899999999999999999999999999654443332 24788899999999998 89999999999
Q ss_pred EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc--cceeeeecce----eeEEEE
Q 047728 286 KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS--HGGVLRGHKL----AILCLV 359 (474)
Q Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~----~v~~~~ 359 (474)
|+||+.........+......+..-+++.++|+++++.||+|+.||.|.+|+...... ...+...|.. ..+.|+
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 9999987766555554555556677899999999999999999999999999754422 2233345544 456667
Q ss_pred ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC--ccceEEEEEeeCCccccccceEEEEEecC------CCcEEEEEc
Q 047728 360 TAGNLVFSGSADMSICIWRRKENEHICLSMLTGH--SGPVKCLAVEKDDESLSREKRWILYSGSL------DKSVKMWRV 431 (474)
Q Consensus 360 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~~~~l~s~s~------Dg~i~vw~~ 431 (474)
++|++|++-+.|+++++||++..+.. +....+- .-+-+.++|+|+.+ +|++|.. .|.+.+||-
T Consensus 374 ~dg~~LlSRg~D~tLKvWDLrq~kkp-L~~~tgL~t~~~~tdc~FSPd~k--------li~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTLKVWDLRQFKKP-LNVRTGLPTPFPGTDCCFSPDDK--------LILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred cccchhhhccCCCceeeeeccccccc-hhhhcCCCccCCCCccccCCCce--------EEEecccccCCCCCceEEEEec
Confidence 79999999999999999999876543 4444332 23568899999999 8998863 467899987
Q ss_pred cCCCCCCCCCcccccccCCCCCCCccccCCCC------CcCCcee
Q 047728 432 SEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSF------SSQGRIC 470 (474)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~------s~Dg~~l 470 (474)
.+- ...+.+......|..+.|||.. +.||..-
T Consensus 445 ~t~-------d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~ 482 (641)
T KOG0772|consen 445 MTL-------DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAH 482 (641)
T ss_pred cce-------eeEEEecCCCceEEEEeecchhhheeeecCCCceE
Confidence 665 3444555557778888899943 5566543
No 90
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.9e-25 Score=181.47 Aligned_cols=294 Identities=19% Similarity=0.255 Sum_probs=226.2
Q ss_pred ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC-------------c----cccccccCccCEEEEEec--C
Q 047728 100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ-------------R----EFSGFKSNSGLVKAIVIS--N 158 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~-------------~----~~~~~~~h~~~V~~i~~~--~ 158 (474)
.+.+..| .....|.+++|. |.+.++|+..++.||-... + ..+.-+.|.+.|.|.+|+ +
T Consensus 23 f~~i~~l-~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 23 FEAINIL-EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred eEEEEEe-cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence 3444444 345678887776 8899999999999987311 0 123346789999999998 8
Q ss_pred CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC----CCE
Q 047728 159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED----QNL 234 (474)
Q Consensus 159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~----~~~ 234 (474)
+.|++|+.|.+|++..++...+..... ...+..|.+.|..++|-.+ +.+
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~---------------------------dle~nmhdgtirdl~fld~~~s~~~i 154 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGH---------------------------DLEFNMHDGTIRDLAFLDDPESGGAI 154 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCc---------------------------ceeeeecCCceeeeEEecCCCcCceE
Confidence 899999999999998877654432111 1134459999999999753 456
Q ss_pred EEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeec---ccc
Q 047728 235 LYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK---QEC 310 (474)
Q Consensus 235 l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~ 310 (474)
|++++ .|..|++-|..+++..+.+.+|.+-|.++---..-++++|+.|.+|++||++...... .+...+.. ..+
T Consensus 155 l~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~--~l~~~~~~~gless 232 (350)
T KOG0641|consen 155 LASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVN--TLDNDFHDGGLESS 232 (350)
T ss_pred EEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceee--eccCcccCCCcccc
Confidence 67655 5778888899999999999999999988854333399999999999999998654311 11112222 236
Q ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECCCC--ceEE
Q 047728 311 AVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKEN--EHIC 386 (474)
Q Consensus 311 ~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~~--~~~~ 386 (474)
.|.++++.|.|++|++|-.|....+||++.+..+ +.+..|...+.|+ +|...|+++|+.|..|++-|+... ....
T Consensus 233 avaav~vdpsgrll~sg~~dssc~lydirg~r~i-q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~ 311 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI-QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELP 311 (350)
T ss_pred eeEEEEECCCcceeeeccCCCceEEEEeeCCcee-eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCc
Confidence 7999999999999999999999999999988655 5667788777665 556789999999999999999753 2233
Q ss_pred EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
+.....|...+..+.|+|..- -+++.+.|.++.+|-+.
T Consensus 312 ~~vv~ehkdk~i~~rwh~~d~--------sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 312 IMVVAEHKDKAIQCRWHPQDF--------SFISSSADKTATLWALN 349 (350)
T ss_pred eEEEEeccCceEEEEecCccc--------eeeeccCcceEEEeccC
Confidence 566778999999999999987 79999999999999864
No 91
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1.6e-26 Score=219.74 Aligned_cols=331 Identities=18% Similarity=0.259 Sum_probs=256.3
Q ss_pred CCCCCCCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CC-EEEEE
Q 047728 92 NNDDGFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NE-KIFSG 164 (474)
Q Consensus 92 ~~~~~~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~-~l~s~ 164 (474)
....+.+....+.++.++...|+++.++ =+.+|.|..+|+|.+++ .++.+..|+...+.|+.++|. |. .+++|
T Consensus 184 lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~ 263 (910)
T KOG1539|consen 184 LQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASG 263 (910)
T ss_pred EEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEec
Confidence 4456778889999999999999999988 56899999999999998 457788888667999999998 44 78888
Q ss_pred eCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcE
Q 047728 165 HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTF 244 (474)
Q Consensus 165 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i 244 (474)
+..|.+.+||++..+..... ...|.+.|..+.|.+....+++++.|+.+
T Consensus 264 ~~~G~m~~wDLe~kkl~~v~-------------------------------~nah~~sv~~~~fl~~epVl~ta~~DnSl 312 (910)
T KOG1539|consen 264 RSNGDMAFWDLEKKKLINVT-------------------------------RNAHYGSVTGATFLPGEPVLVTAGADNSL 312 (910)
T ss_pred cCCceEEEEEcCCCeeeeee-------------------------------eccccCCcccceecCCCceEeeccCCCce
Confidence 88899999999987654322 23488999999999999999999999999
Q ss_pred EEEEcCC--c--ceeeeeeecCcceeEEEecC-CC-eEEEeeCCCcEEEEEcccCC------------------------
Q 047728 245 KVWRTSD--Y--KCLESVIAHDDAVNSIVAGF-DG-LVFTGSADGTVKVWRRELQG------------------------ 294 (474)
Q Consensus 245 ~iwd~~~--~--~~~~~~~~~~~~v~~v~~~~-~~-~l~~~~~dg~i~iwd~~~~~------------------------ 294 (474)
++|=..+ | +.++.-.+|..+..++.|.. ++ .+.+++.|++++.+++....
T Consensus 313 k~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~ 392 (910)
T KOG1539|consen 313 KVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK 392 (910)
T ss_pred eEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence 9885443 3 44555678999999998874 44 78888889888877543100
Q ss_pred -----------------------------------------CceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728 295 -----------------------------------------KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV 333 (474)
Q Consensus 295 -----------------------------------------~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 333 (474)
.+.-......+......+++++.++.|++.+.|+..|.|
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~I 472 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTI 472 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeE
Confidence 000000001111233678999999999999999999999
Q ss_pred EEeecCccccccee--eeecceeeEEEEec--CCEEEEEeCCCcEEEEECCCCceEE-----------------------
Q 047728 334 NFWERELNLSHGGV--LRGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENEHIC----------------------- 386 (474)
Q Consensus 334 ~v~d~~~~~~~~~~--~~~~~~~v~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~~~----------------------- 386 (474)
.+|+++.+...... ...|..++..++.| ++.+++++.+|.+.+||..+.....
T Consensus 473 d~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~ 552 (910)
T KOG1539|consen 473 DRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIA 552 (910)
T ss_pred EEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhh
Confidence 99999998665544 35789999888887 5679999999999999997654211
Q ss_pred ----------------EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCC
Q 047728 387 ----------------LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH 450 (474)
Q Consensus 387 ----------------~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 450 (474)
+..+.+|.+.|++++|+||++ +|++++.|++|++||+.++.... .+ ..
T Consensus 553 ~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr--------WlisasmD~tIr~wDlpt~~lID-------~~-~v 616 (910)
T KOG1539|consen 553 LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR--------WLISASMDSTIRTWDLPTGTLID-------GL-LV 616 (910)
T ss_pred cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc--------EEEEeecCCcEEEEeccCcceee-------eE-ec
Confidence 234578999999999999999 99999999999999999874321 11 12
Q ss_pred CCCCCccccCCCCCcCCceeecc
Q 047728 451 GVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 451 ~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
..++.++ +|||.|.+|++.
T Consensus 617 d~~~~sl----s~SPngD~LAT~ 635 (910)
T KOG1539|consen 617 DSPCTSL----SFSPNGDFLATV 635 (910)
T ss_pred CCcceee----EECCCCCEEEEE
Confidence 2334444 899999999864
No 92
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.6e-26 Score=192.52 Aligned_cols=265 Identities=16% Similarity=0.240 Sum_probs=208.0
Q ss_pred cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728 142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH 219 (474)
Q Consensus 142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 219 (474)
+.+..-.+.|.++.|+ |+.+++++.|.++++||...++...... .+
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~--------------------------------sk 55 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--------------------------------SK 55 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee--------------------------------cc
Confidence 3455567889999998 7899999999999999999887653221 14
Q ss_pred cCCeeEEEecCCCCEEEEEEC--CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728 220 FDAISSLSMSEDQNLLYSASW--DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
.-.|..++|......++.++. |.+|+..++.+.+.++.+.+|...|+.+..+|-+ .+++++.|++|++||++.....
T Consensus 56 kyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq 135 (311)
T KOG1446|consen 56 KYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ 135 (311)
T ss_pred cccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc
Confidence 456778888776677776665 8999999999999999999999999999999988 9999999999999999954431
Q ss_pred eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc-cccceeee-----ecceeeEEEEecCCEEEEEeC
Q 047728 297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN-LSHGGVLR-----GHKLAILCLVTAGNLVFSGSA 370 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~-----~~~~~v~~~~~~~~~l~sgs~ 370 (474)
..+ +...-..++|+|+|-++|++.....|++||++.- +.+...+. ..+...+.++++|++|+.++.
T Consensus 136 ------g~l--~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~ 207 (311)
T KOG1446|consen 136 ------GLL--NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN 207 (311)
T ss_pred ------eEE--ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC
Confidence 111 1222345799999999999998889999999865 22222221 223455889999999999999
Q ss_pred CCcEEEEECCCCceEEEEeecCCccce---EEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccc
Q 047728 371 DMSICIWRRKENEHICLSMLTGHSGPV---KCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPL 447 (474)
Q Consensus 371 dg~i~iwd~~~~~~~~~~~~~~h~~~v---~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~ 447 (474)
.+.+++.|.-.+.. +..+.++...- ...+|.||++ ++++|+.||+|.+|+++++. ....+
T Consensus 208 ~s~~~~lDAf~G~~--~~tfs~~~~~~~~~~~a~ftPds~--------Fvl~gs~dg~i~vw~~~tg~-------~v~~~ 270 (311)
T KOG1446|consen 208 ASFIYLLDAFDGTV--KSTFSGYPNAGNLPLSATFTPDSK--------FVLSGSDDGTIHVWNLETGK-------KVAVL 270 (311)
T ss_pred CCcEEEEEccCCcE--eeeEeeccCCCCcceeEEECCCCc--------EEEEecCCCcEEEEEcCCCc-------EeeEe
Confidence 99999999998883 45555544332 5778999999 99999999999999998884 44444
Q ss_pred cC-CCCCCCccccCCCC
Q 047728 448 EG-HGVAPNSLPYAPSF 463 (474)
Q Consensus 448 ~~-~~~~v~~l~~~p~~ 463 (474)
.+ +..++.++.|+|.+
T Consensus 271 ~~~~~~~~~~~~fnP~~ 287 (311)
T KOG1446|consen 271 RGPNGGPVSCVRFNPRY 287 (311)
T ss_pred cCCCCCCccccccCCce
Confidence 44 67788888788754
No 93
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.1e-26 Score=192.90 Aligned_cols=304 Identities=19% Similarity=0.263 Sum_probs=223.0
Q ss_pred CCCCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc----cccccc--cCccCEEEEEecCC---EEEE
Q 047728 95 DGFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR----EFSGFK--SNSGLVKAIVISNE---KIFS 163 (474)
Q Consensus 95 ~~~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~----~~~~~~--~h~~~V~~i~~~~~---~l~s 163 (474)
..|.-.-.+..|++|.+.|++++|+ |++|+|++.|++|+||++.. +.+.++ -.-+.-+.+.|.++ .+++
T Consensus 71 ~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 71 PTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred CCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence 3444556677899999999999997 99999999999999998653 211111 12235677888744 6777
Q ss_pred EeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCc
Q 047728 164 GHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKT 243 (474)
Q Consensus 164 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~ 243 (474)
.....++++|.+...+.-. ..... +.......-..|.-.|..+-....+.+|++++.|..
T Consensus 151 ~~~g~~l~vyk~~K~~dG~-~~~~~-------------------v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~ 210 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGS-GSHHF-------------------VHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK 210 (420)
T ss_pred EccCCEEEEEEeeecccCC-CCccc-------------------ccccccccchhcccceEEEeecCCceEEEEecCCCc
Confidence 7778889999887653210 00000 000000112347778888888889999999999999
Q ss_pred EEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCcee--eeeeeeeecccccEEEEEEcCC
Q 047728 244 FKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTK--HFFSQTLLKQECAVTALAISPD 320 (474)
Q Consensus 244 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~v~~l~~~~~ 320 (474)
|.+|+++ |+.+..+......-+..+.+|+| ++++++.---|++|.+-....+.. ......+.+|...|..++|+++
T Consensus 211 i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~ 289 (420)
T KOG2096|consen 211 ICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS 289 (420)
T ss_pred EEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC
Confidence 9999998 89999998877777888999999 888888888999999765544322 2234567899999999999999
Q ss_pred CCEEEEEcCCCcEEEeecCcccccce---eee---------ecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEE
Q 047728 321 AAIVYCGSSDGLVNFWERELNLSHGG---VLR---------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLS 388 (474)
Q Consensus 321 ~~~l~~~~~dg~i~v~d~~~~~~~~~---~~~---------~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 388 (474)
...+++.+.||.+++||.+-.....+ +++ +...--+.++|+|+.|+... ...+++|..++++.. -.
T Consensus 290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~-~~ 367 (420)
T KOG2096|consen 290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDY-PE 367 (420)
T ss_pred cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccc-hh
Confidence 99999999999999999754322111 111 11122478899999888765 557999999887633 22
Q ss_pred eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728 389 MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 389 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
.-..|...|.+++|+++++ +++|++ |..+++..
T Consensus 368 ~e~~h~~~Is~is~~~~g~--------~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 368 LEDIHSTTISSISYSSDGK--------YIATCG-DRYVRVIR 400 (420)
T ss_pred HHHhhcCceeeEEecCCCc--------EEeeec-ceeeeeec
Confidence 3346899999999999999 898886 67888876
No 94
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-27 Score=213.49 Aligned_cols=279 Identities=21% Similarity=0.300 Sum_probs=213.8
Q ss_pred EEEEeCCccccccccCccCEEEEEecC---CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEE
Q 047728 132 IRVWKNQREFSGFKSNSGLVKAIVISN---EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208 (474)
Q Consensus 132 v~vwd~~~~~~~~~~h~~~V~~i~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (474)
.+-|+........+ ....|.+++|++ ..+++.+.- .+.+|+..+.....
T Consensus 11 ~~~w~~~~~~~~~k-e~~~vssl~fsp~~P~d~aVt~S~-rvqly~~~~~~~~k-------------------------- 62 (487)
T KOG0310|consen 11 IRYWRQETFPPVHK-EHNSVSSLCFSPKHPYDFAVTSSV-RVQLYSSVTRSVRK-------------------------- 62 (487)
T ss_pred chhhhhhccccccc-ccCcceeEecCCCCCCceEEeccc-EEEEEecchhhhhh--------------------------
Confidence 44565333222223 345799999984 344444433 48899887654432
Q ss_pred eeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEE
Q 047728 209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVK 286 (474)
Q Consensus 209 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~ 286 (474)
.+..-.+.|.+++|..||++|++|...|.|+|||+.+...+..+.+|+.+|..+.|+|++ .+++|+.|+.++
T Consensus 63 ------~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 63 ------TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK 136 (487)
T ss_pred ------hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence 122256689999999999999999999999999988877889999999999999999987 889999999999
Q ss_pred EEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcc-cccceeeeecceeeEEEEecCCE
Q 047728 287 VWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELN-LSHGGVLRGHKLAILCLVTAGNL 364 (474)
Q Consensus 287 iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 364 (474)
+||+.... ....+.+|+..|.|.+|+| ++.++++|+.||.|++||.+.. .....+..++....+++-|.|..
T Consensus 137 ~~d~s~a~------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ 210 (487)
T KOG0310|consen 137 YWDLSTAY------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSL 210 (487)
T ss_pred EEEcCCcE------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCE
Confidence 99997543 2557889999999999999 5668999999999999999877 44444445566666777788999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCccc
Q 047728 365 VFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQ 444 (474)
Q Consensus 365 l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~ 444 (474)
+++++ ...|++||+.++... +..+..|...|+|+++..++. .|++|+.|+.|++|++.+-+ ..
T Consensus 211 iasAg-Gn~vkVWDl~~G~ql-l~~~~~H~KtVTcL~l~s~~~--------rLlS~sLD~~VKVfd~t~~K-------vv 273 (487)
T KOG0310|consen 211 IASAG-GNSVKVWDLTTGGQL-LTSMFNHNKTVTCLRLASDST--------RLLSGSLDRHVKVFDTTNYK-------VV 273 (487)
T ss_pred EEEcC-CCeEEEEEecCCcee-hhhhhcccceEEEEEeecCCc--------eEeecccccceEEEEccceE-------EE
Confidence 99887 458999999966543 445556999999999999987 89999999999999976642 22
Q ss_pred ccccCCCCCCCccccCCCCCcCCceeec
Q 047728 445 HPLEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 445 ~~~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
+.+ .-.++|-++ +.|||++.++-
T Consensus 274 ~s~-~~~~pvLsi----avs~dd~t~vi 296 (487)
T KOG0310|consen 274 HSW-KYPGPVLSI----AVSPDDQTVVI 296 (487)
T ss_pred Eee-ecccceeeE----EecCCCceEEE
Confidence 221 234566677 66777777664
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-27 Score=219.82 Aligned_cols=269 Identities=20% Similarity=0.378 Sum_probs=218.8
Q ss_pred cCCEEEEeeCCCcEEEEeCCc--------cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecc
Q 047728 119 AGDLLYTGSDSKNIRVWKNQR--------EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGT 188 (474)
Q Consensus 119 ~~~~l~tgs~dg~v~vwd~~~--------~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 188 (474)
.+++|+||+.||.|++|+... ....++.|.+.|+.++.. ++.|++++.|-+|++|+...+.....
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~----- 110 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCM----- 110 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhH-----
Confidence 377999999999999997441 366788999999998876 66999999999999999987641111
Q ss_pred cCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe-cCCCCEEEEEECCCcEEEEEcCCcc--eee--------e
Q 047728 189 LPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM-SEDQNLLYSASWDKTFKVWRTSDYK--CLE--------S 257 (474)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-~~~~~~l~s~s~dg~i~iwd~~~~~--~~~--------~ 257 (474)
.++..|.+-|.|+++ .++..++|+|+-|+.|.+||++++. .+. .
T Consensus 111 -------------------------stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s 165 (735)
T KOG0308|consen 111 -------------------------STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS 165 (735)
T ss_pred -------------------------hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence 123449999999999 7788999999999999999999772 222 2
Q ss_pred ee-ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEE
Q 047728 258 VI-AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335 (474)
Q Consensus 258 ~~-~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v 335 (474)
+. ++...|++++.++.+ .+++|+..+.|++||.++..+ ...+.+|...|.++..+++|..++++++||+|++
T Consensus 166 l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k------imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK------IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred CCCCCccceeeeecCCcceEEEecCcccceEEeccccccc------eeeeeccccceEEEEEcCCCCeEeecCCCceEEe
Confidence 22 678899999999998 899999999999999997765 5667799999999999999999999999999999
Q ss_pred eecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccc
Q 047728 336 WERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREK 413 (474)
Q Consensus 336 ~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 413 (474)
||+....++. .+..|...+.++.. +=..+++|+.||.|..=|+++... ...+.....+|..+..+...+
T Consensus 240 WdLgqQrCl~-T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~--~tlick~daPv~~l~~~~~~~------ 310 (735)
T KOG0308|consen 240 WDLGQQRCLA-TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK--STLICKEDAPVLKLHLHEHDN------ 310 (735)
T ss_pred eeccccceee-eEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh--heEeecCCCchhhhhhccccC------
Confidence 9999887774 46677777766654 567899999999999999988532 222333556788888876655
Q ss_pred eEEEEEecCCCcEEEEEccCC
Q 047728 414 RWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 414 ~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
-+-+++.|+.|+-|...-.
T Consensus 311 --~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 311 --SVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred --CceeeeccccceecCCccc
Confidence 3577888999999987543
No 96
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=216.92 Aligned_cols=332 Identities=15% Similarity=0.136 Sum_probs=241.7
Q ss_pred EEEEc--CCEEEEeeCCCcEEEEeCCcc-----ccccccCccCEEEEEec-------------CCEEEEEeCCCeEEEEe
Q 047728 115 SLAAA--GDLLYTGSDSKNIRVWKNQRE-----FSGFKSNSGLVKAIVIS-------------NEKIFSGHQDGKIRVWK 174 (474)
Q Consensus 115 ~~~~~--~~~l~tgs~dg~v~vwd~~~~-----~~~~~~h~~~V~~i~~~-------------~~~l~s~~~dg~i~vwd 174 (474)
++.|+ .+.|..-..|..++|||+... ...+.-|...|..+..- ...++|++.|++||+|+
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~ 408 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWD 408 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEee
Confidence 34455 668888889999999996532 33455677777776542 34699999999999999
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEee-------eccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEE
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRR-------HRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW 247 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw 247 (474)
++...-....... ....++.+........-.+.. .......+....+.+++++|++++|++|..-|+|+||
T Consensus 409 l~~ctnn~vyrRN--ils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 409 LAFCTNNQVYRRN--ILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred cccccccceeecc--cchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 9873221111110 111111111111111111111 1111223345579999999999999999999999999
Q ss_pred EcCCcceeeeeeecCcceeEEEecCCC----eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC--
Q 047728 248 RTSDYKCLESVIAHDDAVNSIVAGFDG----LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA-- 321 (474)
Q Consensus 248 d~~~~~~~~~~~~~~~~v~~v~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-- 321 (474)
|+...+.+..+.+|+..|.|+.++... +|++++.|..|+|||....- .+.+++.+|...|+++.|..+|
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny-----~l~qtld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY-----DLVQTLDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-----chhhhhcccccceeEEEEeecCCc
Confidence 999999999999999999999998653 79999999999999986433 2678899999999999999877
Q ss_pred CEEEEEcCCCcEEEeecCcccccceeeeec------ceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeec---C
Q 047728 322 AIVYCGSSDGLVNFWERELNLSHGGVLRGH------KLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLT---G 392 (474)
Q Consensus 322 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~------~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~---~ 392 (474)
..+++++.|..|.+--.+....-..+.+.| ...-+.+.|..+++++++.|..|+|||+.+++. ...++ +
T Consensus 562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq--~k~FKgs~~ 639 (1080)
T KOG1408|consen 562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ--VKSFKGSRD 639 (1080)
T ss_pred eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce--eeeeccccc
Confidence 688889999887653332111111111111 122256667789999999999999999999984 34444 4
Q ss_pred CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 393 h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
|.+....+...|.+. ||++...|.++.++|+.++ ++...+.||+..|+.+ .|++|.+.|.+
T Consensus 640 ~eG~lIKv~lDPSgi--------Y~atScsdktl~~~Df~sg-------EcvA~m~GHsE~VTG~----kF~nDCkHlIS 700 (1080)
T KOG1408|consen 640 HEGDLIKVILDPSGI--------YLATSCSDKTLCFVDFVSG-------ECVAQMTGHSEAVTGV----KFLNDCKHLIS 700 (1080)
T ss_pred CCCceEEEEECCCcc--------EEEEeecCCceEEEEeccc-------hhhhhhcCcchheeee----eecccchhhee
Confidence 677888999999998 9999999999999999998 7888899999999999 77888887766
Q ss_pred cC
Q 047728 473 RS 474 (474)
Q Consensus 473 ~s 474 (474)
-|
T Consensus 701 vs 702 (1080)
T KOG1408|consen 701 VS 702 (1080)
T ss_pred ec
Confidence 43
No 97
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=8e-28 Score=208.04 Aligned_cols=271 Identities=14% Similarity=0.259 Sum_probs=218.7
Q ss_pred ccccccCccCEEEEEecCC---EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 141 FSGFKSNSGLVKAIVISNE---KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 141 ~~~~~~h~~~V~~i~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
+..+.+|.+.|.|++-+++ .+++|+.||.|++||+.+.++.. .+.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~--------------------------------~f~ 106 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR--------------------------------TFK 106 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh--------------------------------eee
Confidence 3456789999999999854 58999999999999999877653 345
Q ss_pred eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
.|.+.|..|++.. ..+++++.|.+|+.|-+.. ..+.++.+ ...+..+.-+..+ .+++++. .|.|||.+...
T Consensus 107 AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~-- 178 (433)
T KOG0268|consen 107 AHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDN-- 178 (433)
T ss_pred cccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCC--
Confidence 5999999999976 6789999999999998765 46666644 4556666655544 6777664 58999986444
Q ss_pred eeeeeeeeeecccccEEEEEEcCC-CCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEE
Q 047728 297 TKHFFSQTLLKQECAVTALAISPD-AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSIC 375 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~ 375 (474)
+...+.-....|.++.|+|. ...|+++.+|+.|.+||+++...+..+.......-+||.|.+-.+++|++|..++
T Consensus 179 ----Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY 254 (433)
T KOG0268|consen 179 ----PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLY 254 (433)
T ss_pred ----ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccce
Confidence 35556666778999999994 5677778899999999999999988888888888999999888899999999999
Q ss_pred EEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCC
Q 047728 376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPN 455 (474)
Q Consensus 376 iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~ 455 (474)
.||++..+.. +....+|.++|.++.|+|.|+ -+++||.|.+|+||.+..+....++ |+.++.
T Consensus 255 ~~DmR~l~~p-~~v~~dhvsAV~dVdfsptG~--------EfvsgsyDksIRIf~~~~~~SRdiY---------htkRMq 316 (433)
T KOG0268|consen 255 TYDMRNLSRP-LNVHKDHVSAVMDVDFSPTGQ--------EFVSGSYDKSIRIFPVNHGHSRDIY---------HTKRMQ 316 (433)
T ss_pred ehhhhhhccc-chhhcccceeEEEeccCCCcc--------hhccccccceEEEeecCCCcchhhh---------hHhhhh
Confidence 9999987654 778899999999999999999 7999999999999999887433221 333333
Q ss_pred ccccCCCCCcCCceeeccC
Q 047728 456 SLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 456 ~l~~~p~~s~Dg~~l~~~s 474 (474)
.+ |+..||-|.+++.+||
T Consensus 317 ~V-~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 317 HV-FCVKYSMDSKYIISGS 334 (433)
T ss_pred ee-eEEEEeccccEEEecC
Confidence 33 4558999999999987
No 98
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=4.3e-26 Score=192.21 Aligned_cols=283 Identities=17% Similarity=0.249 Sum_probs=218.1
Q ss_pred eeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCcc-----------------ccccccCccCEEEEEec---CCEEEE
Q 047728 107 VREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQRE-----------------FSGFKSNSGLVKAIVIS---NEKIFS 163 (474)
Q Consensus 107 ~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~~-----------------~~~~~~h~~~V~~i~~~---~~~l~s 163 (474)
..|.|.|+++..+ |+|+++|+.||.|.|||+++. ...-.+|.-.|..+.|- ..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 4688999999987 999999999999999996521 11124677888888875 668999
Q ss_pred EeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC---CCCEEEEEEC
Q 047728 164 GHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE---DQNLLYSASW 240 (474)
Q Consensus 164 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~l~s~s~ 240 (474)
++.|.+++|||..+.+....+. -.+.|.+-+++| ..-++++|..
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~---------------------------------me~~VYshamSp~a~sHcLiA~gtr 166 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK---------------------------------MEGKVYSHAMSPMAMSHCLIAAGTR 166 (397)
T ss_pred ccccceEEEeecccceeeEEee---------------------------------cCceeehhhcChhhhcceEEEEecC
Confidence 9999999999999876654333 344566667777 2457788889
Q ss_pred CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCC---------ceeeeeeeeeeccc
Q 047728 241 DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGK---------GTKHFFSQTLLKQE 309 (474)
Q Consensus 241 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~ 309 (474)
|-.|++.|+.+|.+.+++.+|.+.|.++.|+|.. .|++|+.||.|++||++.... .......+....|.
T Consensus 167 ~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~ 246 (397)
T KOG4283|consen 167 DVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHY 246 (397)
T ss_pred CCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccc
Confidence 9999999999999999999999999999999998 899999999999999985311 11112233456788
Q ss_pred ccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee--eccee-eEE--E-EecCCEEEEEeCCCcEEEEECCCCc
Q 047728 310 CAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR--GHKLA-ILC--L-VTAGNLVFSGSADMSICIWRRKENE 383 (474)
Q Consensus 310 ~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~~-v~~--~-~~~~~~l~sgs~dg~i~iwd~~~~~ 383 (474)
+.|..++|..++.++++++.|..+++|+...+........ .|... -.. + +.+...++---.++.+.++++-.+.
T Consensus 247 gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs 326 (397)
T KOG4283|consen 247 GKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGS 326 (397)
T ss_pred ceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCce
Confidence 9999999999999999999999999999877643221110 11100 011 1 2233444444456899999998887
Q ss_pred eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 384 HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 384 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
.+..+..|-..|.|.++-|+-+ ...+|..|+.|..|-..
T Consensus 327 --~ir~l~~h~k~i~c~~~~~~fq--------~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 327 --FVRRLSTHLKRINCAAYRPDFE--------QCFTGDMNGNIYMWSPA 365 (397)
T ss_pred --EEEeeecccceeeEEeecCchh--------hhhccccCCcccccccc
Confidence 4678888988999999999988 79999999999999874
No 99
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=197.51 Aligned_cols=284 Identities=18% Similarity=0.282 Sum_probs=236.0
Q ss_pred EEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeee
Q 047728 122 LLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCS 199 (474)
Q Consensus 122 ~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (474)
.+++.-.+++++. +.+..+.+|.+.|..++.. ...+.+++.|.+.+||.++++.++.
T Consensus 126 rivssFk~~t~~~----~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~----------------- 184 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF----RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA----------------- 184 (481)
T ss_pred hheeeecCCceeE----eehhhhcccccceeeehhhcCCcceeecccccceeEEeecccccee-----------------
Confidence 3444444555433 4566788999999999887 4578899999999999999998863
Q ss_pred cCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc------CC----------------------
Q 047728 200 MKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT------SD---------------------- 251 (474)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~------~~---------------------- 251 (474)
.|.+|.+.|++|.|++.+.++++++.|++-.||.. ..
T Consensus 185 ---------------~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d 249 (481)
T KOG0300|consen 185 ---------------TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRD 249 (481)
T ss_pred ---------------eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccc
Confidence 45679999999999999999999999999999962 10
Q ss_pred ------------cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEc
Q 047728 252 ------------YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAIS 318 (474)
Q Consensus 252 ------------~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 318 (474)
..++..+.+|...|.+..|...+ .+++++.|.+..+||++++. ....+.+|....+.++-+
T Consensus 250 ~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge------~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 250 TDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE------VVNILTGHDSELTHCSTH 323 (481)
T ss_pred cccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc------eeccccCcchhccccccC
Confidence 01344677899999999998888 99999999999999999776 477889999999999999
Q ss_pred CCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccce
Q 047728 319 PDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPV 397 (474)
Q Consensus 319 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v 397 (474)
|..+++++.+.|.+.++||.+........+.+|...+.+..+. +..+++|+.|.+|++||+++.+.. +.++. -.+++
T Consensus 324 ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsp-lATIR-tdS~~ 401 (481)
T KOG0300|consen 324 PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSP-LATIR-TDSPA 401 (481)
T ss_pred CcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCc-ceeee-cCCcc
Confidence 9999999999999999999997777778899999999998885 788999999999999999987653 55555 45789
Q ss_pred EEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccC
Q 047728 398 KCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYA 460 (474)
Q Consensus 398 ~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 460 (474)
+.++++..+. +++.--++..|++||++...... .+...-++|...|.+.+|.
T Consensus 402 NRvavs~g~~--------iIAiPhDNRqvRlfDlnG~RlaR---lPrtsRqgHrRMV~c~AW~ 453 (481)
T KOG0300|consen 402 NRVAVSKGHP--------IIAIPHDNRQVRLFDLNGNRLAR---LPRTSRQGHRRMVTCCAWL 453 (481)
T ss_pred ceeEeecCCc--------eEEeccCCceEEEEecCCCcccc---CCcccccccceeeeeeecc
Confidence 9999999888 88888889999999998764432 2333456899999999775
No 100
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=4e-26 Score=212.91 Aligned_cols=358 Identities=19% Similarity=0.297 Sum_probs=262.5
Q ss_pred cceeeeeeeeecCcEEEEEEc---C-C-EEEEeeCCCcEEEEeCC--c------------------------cc------
Q 047728 99 PNVLIGSLVREEGHIYSLAAA---G-D-LLYTGSDSKNIRVWKNQ--R------------------------EF------ 141 (474)
Q Consensus 99 ~~~~~~~l~~h~~~i~~~~~~---~-~-~l~tgs~dg~v~vwd~~--~------------------------~~------ 141 (474)
....+..|.||++-|.+++|. + + +||++|+|..||||++. . .+
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 447888999999999999987 3 3 78999999999999511 0 00
Q ss_pred -cccccCccCEEEEEecC--CEEEEEeCCCeEEEEecCCCCcc--eeeeecccC-ccceeeeeecCCCCeE---------
Q 047728 142 -SGFKSNSGLVKAIVISN--EKIFSGHQDGKIRVWKVSSKDAS--IHKRVGTLP-TFKDFIKCSMKPSNYI--------- 206 (474)
Q Consensus 142 -~~~~~h~~~V~~i~~~~--~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~--------- 206 (474)
..+.+|.+.|.++.|.+ ..|++++.|.++.+|.-+...-+ ...+++.+. ....+..+-+.+....
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 12459999999999994 47999999999999998876433 333444433 1122333333333321
Q ss_pred -EEee-------eccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC----cceeeeeeecCcceeEEEecCCC
Q 047728 207 -EVRR-------HRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD----YKCLESVIAHDDAVNSIVAGFDG 274 (474)
Q Consensus 207 -~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~v~~v~~~~~~ 274 (474)
..+. .......||.+.|++++|.|.|.+|++++.|.+-|++---. ...+..-+-|.-.++|+++-+..
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence 2222 11234468999999999999999999999999999986431 12233345688889999999844
Q ss_pred -eEEEeeCCCcEEEEEccc-------------------------------------------CCC---------------
Q 047728 275 -LVFTGSADGTVKVWRREL-------------------------------------------QGK--------------- 295 (474)
Q Consensus 275 -~l~~~~~dg~i~iwd~~~-------------------------------------------~~~--------------- 295 (474)
.+++|.....+|+|+... +..
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 899999999999996430 000
Q ss_pred ------------ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-----cEEEeecCcccccceeeeecceee--E
Q 047728 296 ------------GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-----LVNFWERELNLSHGGVLRGHKLAI--L 356 (474)
Q Consensus 296 ------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~~~~~v--~ 356 (474)
.........+.+|...|.+++.+|+++++++++... .|++|+..+-... +.+.+|...| +
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~-~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV-QELEGHSLTVTRL 578 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh-heecccceEEEEE
Confidence 000011233568889999999999999999988653 5899998877655 3677898877 5
Q ss_pred EEEecCCEEEEEeCCCcEEEEECCCCceE--EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 357 CLVTAGNLVFSGSADMSICIWRRKENEHI--CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 357 ~~~~~~~~l~sgs~dg~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
.|+||+++|++.+.|.++.+|........ .....+.|+.-|.++.|+|++. +|+|+|.|.+|+||.....
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~--------~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK--------YFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc--------eeEEecCCceEEEEeccCc
Confidence 67789999999999999999998543211 1334778999999999999999 8999999999999999876
Q ss_pred CCCCCCCcccccccCCCCCCCccccCCCCCcCCc
Q 047728 435 APPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGR 468 (474)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~ 468 (474)
....+ .......++..|+.++|+|.+-++..
T Consensus 651 ~d~~i---~~~a~~~~~~aVTAv~~~~~~~~e~~ 681 (764)
T KOG1063|consen 651 RDKYI---SRFACLKFSLAVTAVAYLPVDHNEKG 681 (764)
T ss_pred hhhhh---hhhchhccCCceeeEEeecccccccc
Confidence 32211 11144567889999999998877666
No 101
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.4e-25 Score=190.61 Aligned_cols=264 Identities=16% Similarity=0.206 Sum_probs=205.4
Q ss_pred cCcEEEEEEc--CCEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728 110 EGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKR 185 (474)
Q Consensus 110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 185 (474)
+..|.++.|+ ++.|+++++||++++||.. ..+...-.|..++.+++|. ...+++|+.||.|+++|+.+++...
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~--- 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQ--- 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCccee---
Confidence 3457777776 6677778899999999955 3444555699999999998 5689999999999999999886532
Q ss_pred ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcce
Q 047728 186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV 265 (474)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v 265 (474)
+..|..+|.||.+++....+++|++|++|++||.+.......+.. ...|
T Consensus 90 ------------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkV 138 (323)
T KOG1036|consen 90 ------------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKV 138 (323)
T ss_pred ------------------------------eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceE
Confidence 233999999999999888999999999999999998666666654 4488
Q ss_pred eEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc---c
Q 047728 266 NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN---L 342 (474)
Q Consensus 266 ~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~---~ 342 (474)
.++.... +.|++|+.+..|.+||++...... ......-+-.++|+++-|++.-+++++-||.|.+=.++.. .
T Consensus 139 y~~~v~g-~~LvVg~~~r~v~iyDLRn~~~~~----q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~ 213 (323)
T KOG1036|consen 139 YCMDVSG-NRLVVGTSDRKVLIYDLRNLDEPF----QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ 213 (323)
T ss_pred EEEeccC-CEEEEeecCceEEEEEcccccchh----hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence 8888763 389999999999999999655421 2223334557899999998888999999999887433322 1
Q ss_pred ccceeeeecc-----------eeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccc
Q 047728 343 SHGGVLRGHK-----------LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSR 411 (474)
Q Consensus 343 ~~~~~~~~~~-----------~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 411 (474)
.....++.|. ...++|+|-.+.|+||+.||.|.+||..+.+ .+..+......|..++|+.++.
T Consensus 214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK--rl~q~~~~~~SI~slsfs~dG~---- 287 (323)
T KOG1036|consen 214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK--RLKQLAKYETSISSLSFSMDGS---- 287 (323)
T ss_pred hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchh--hhhhccCCCCceEEEEeccCCC----
Confidence 1222333332 3346677778899999999999999998877 3566777777899999999999
Q ss_pred cceEEEEEecC
Q 047728 412 EKRWILYSGSL 422 (474)
Q Consensus 412 ~~~~~l~s~s~ 422 (474)
.||.++.
T Consensus 288 ----~LAia~s 294 (323)
T KOG1036|consen 288 ----LLAIASS 294 (323)
T ss_pred ----eEEEEec
Confidence 8888864
No 102
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=8e-26 Score=192.05 Aligned_cols=265 Identities=17% Similarity=0.234 Sum_probs=202.7
Q ss_pred CccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728 147 NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS 224 (474)
Q Consensus 147 h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 224 (474)
-...|..+.|+ ++.|++++.||++++|++........ ..|..++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~---------------------------------~~~~~plL 58 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK---------------------------------FKHGAPLL 58 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh---------------------------------eecCCcee
Confidence 35679999998 56788888999999999998754322 23899999
Q ss_pred EEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeee
Q 047728 225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQ 303 (474)
Q Consensus 225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 303 (474)
+++|.+ ...+++|+.||.|+.+|+.++.. ..+..|..+|.||...+.. .+++|+.|++|++||.+.... .
T Consensus 59 ~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~-------~ 129 (323)
T KOG1036|consen 59 DCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV-------V 129 (323)
T ss_pred eeeccC-CceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc-------c
Confidence 999987 46899999999999999988765 4556799999999998755 999999999999999985221 1
Q ss_pred eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee---ecceeeEEEEecCCEEEEEeCCCcEEEEECC
Q 047728 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR---GHKLAILCLVTAGNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 304 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~ 380 (474)
........|.++.. .++.|++|+.|..+.+||+++.....+... ......+++-|++.-.++++.||.|.+=.++
T Consensus 130 ~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d 207 (323)
T KOG1036|consen 130 GTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFD 207 (323)
T ss_pred cccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccC
Confidence 22223336777666 477899999999999999998755542211 2233445666788889999999999886665
Q ss_pred CCc--eEEEEeecCCc---------cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccC
Q 047728 381 ENE--HICLSMLTGHS---------GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEG 449 (474)
Q Consensus 381 ~~~--~~~~~~~~~h~---------~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~ 449 (474)
..+ ......++.|. -||++++|+|-.. .|+||+.||.|.+||+... +....+..
T Consensus 208 ~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~--------tfaTgGsDG~V~~Wd~~~r-------Krl~q~~~ 272 (323)
T KOG1036|consen 208 DSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG--------TFATGGSDGIVNIWDLFNR-------KRLKQLAK 272 (323)
T ss_pred CchHHhhhceeEEeeecccCCceEEEEeceeEeccccc--------eEEecCCCceEEEccCcch-------hhhhhccC
Confidence 431 11234556664 3899999999977 8999999999999999887 34444555
Q ss_pred CCCCCCccccCCCCCcCCceeeccC
Q 047728 450 HGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 450 ~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
-...|.++ +|+.||..|+.++
T Consensus 273 ~~~SI~sl----sfs~dG~~LAia~ 293 (323)
T KOG1036|consen 273 YETSISSL----SFSMDGSLLAIAS 293 (323)
T ss_pred CCCceEEE----EeccCCCeEEEEe
Confidence 56668888 8999999998653
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.3e-26 Score=192.00 Aligned_cols=240 Identities=14% Similarity=0.249 Sum_probs=190.9
Q ss_pred ceeeeeeeeecCcEEEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecC----CEEEEEeCCCeEEEE
Q 047728 100 NVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISN----EKIFSGHQDGKIRVW 173 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~----~~l~s~~~dg~i~vw 173 (474)
...+..+..|.++|++++.++.++|+|+.|-+|+|||.. .++..+..|.+.|+++.|.. ..|++|+.||.|.+|
T Consensus 33 l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred eeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 344667888999999999999999999999999999965 46777889999999999983 279999999999999
Q ss_pred ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc
Q 047728 174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK 253 (474)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 253 (474)
+...-.+. ..+.+|...|+.++++|.+++-++.+.|+.+++||+-+|+
T Consensus 113 ~~~~W~~~--------------------------------~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 113 RVGSWELL--------------------------------KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred EcCCeEEe--------------------------------eeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 98775433 3455699999999999999999999999999999999888
Q ss_pred eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728 254 CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL 332 (474)
Q Consensus 254 ~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 332 (474)
.-..++- ......+.|+|.| +++.+.. ..|-+|.+..... .........+.++.|. ++..|++|..|+.
T Consensus 161 ~a~v~~L-~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v-------~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 161 VAFVLNL-KNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNASV-------FREIENPKRILCATFL-DGSELLVGGDNEW 230 (362)
T ss_pred cceeecc-CCcceeeEEcCCCCEEEEEec-cEEEEEecccHhH-------hhhhhccccceeeeec-CCceEEEecCCce
Confidence 7666543 2233459999999 5665554 4588887764321 1111122345566665 6778889999999
Q ss_pred EEEeecCcccccceeeeecceeeEEEEe----cCCEEEEEeCCCcEEEEECCCC
Q 047728 333 VNFWERELNLSHGGVLRGHKLAILCLVT----AGNLVFSGSADMSICIWRRKEN 382 (474)
Q Consensus 333 i~v~d~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~sgs~dg~i~iwd~~~~ 382 (474)
|.+||.+.. .....+.+|...|-.+.+ .+.+|++++.||.|++||++..
T Consensus 231 i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 231 ISLKDTDSD-TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEeccCCC-ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 999999874 444678899999987774 4579999999999999999865
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.8e-27 Score=218.25 Aligned_cols=240 Identities=23% Similarity=0.360 Sum_probs=200.2
Q ss_pred CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728 158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS 237 (474)
Q Consensus 158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 237 (474)
+++|+||+.||.|++|++.......... ....+..|.+.|++++...+++.|++
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~--------------------------~~asme~HsDWVNDiiL~~~~~tlIS 90 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTP--------------------------YIASMEHHSDWVNDIILCGNGKTLIS 90 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccc--------------------------hhhhhhhhHhHHhhHHhhcCCCceEE
Confidence 5689999999999999987654321111 01233459999999999999999999
Q ss_pred EECCCcEEEEEcCCc--ceeeeeeecCcceeEEEe-cCCC-eEEEeeCCCcEEEEEcccCCCc----eeeeeeeeee-cc
Q 047728 238 ASWDKTFKVWRTSDY--KCLESVIAHDDAVNSIVA-GFDG-LVFTGSADGTVKVWRRELQGKG----TKHFFSQTLL-KQ 308 (474)
Q Consensus 238 ~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~v~~-~~~~-~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~-~~ 308 (474)
++.|-+|++|+...+ -++.++..|.+.|.|+++ .++. .+++|+-|+.|.+||++.+... ........+. ++
T Consensus 91 ~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 91 ASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred ecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence 999999999999877 688899999999999999 5555 8999999999999999865320 0111122223 78
Q ss_pred cccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECCCCceEE
Q 047728 309 ECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKENEHIC 386 (474)
Q Consensus 309 ~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~~~ 386 (474)
...|.+++.++.+..|+.|+..+.+++||.++..... .+++|...|.++ ..+|..+++++.||+|++||+...+ |
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kim-kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr--C 247 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIM-KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR--C 247 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEecccccccee-eeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc--e
Confidence 8899999999999999999999999999999988774 455998877554 5689999999999999999997666 8
Q ss_pred EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+.++..|...|+++..+|+-. .+++|+.||.|..=|+++.
T Consensus 248 l~T~~vH~e~VWaL~~~~sf~--------~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 248 LATYIVHKEGVWALQSSPSFT--------HVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eeeEEeccCceEEEeeCCCcc--------eEEecCCCCcEEecccCCc
Confidence 899999999999999999888 8999999999999999884
No 105
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.4e-27 Score=192.19 Aligned_cols=240 Identities=21% Similarity=0.292 Sum_probs=190.4
Q ss_pred eeecCcEEEEE--EcCCEEEEeeCCCcEEEEeCC-----ccccccccCccCEEEEEec----CCEEEEEeCCCeEEEEec
Q 047728 107 VREEGHIYSLA--AAGDLLYTGSDSKNIRVWKNQ-----REFSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIRVWKV 175 (474)
Q Consensus 107 ~~h~~~i~~~~--~~~~~l~tgs~dg~v~vwd~~-----~~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~vwd~ 175 (474)
..|++.|.... +.|+.|||++.|++|+|+... +.+..+.+|.++|..++|. |..|++++.||.|.||+-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 45778787755 459999999999999999733 4677899999999999996 789999999999999999
Q ss_pred CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC--CCCEEEEEECCCcEEEEEcCCc-
Q 047728 176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE--DQNLLYSASWDKTFKVWRTSDY- 252 (474)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~- 252 (474)
++++-... ..+..|...|++++|.| -|-.|++++.||.|.|.+.++.
T Consensus 88 ~~g~w~k~------------------------------~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g 137 (299)
T KOG1332|consen 88 ENGRWTKA------------------------------YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG 137 (299)
T ss_pred CCCchhhh------------------------------hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC
Confidence 88754322 22345999999999999 4678999999999999988754
Q ss_pred --ceeeeeeecCcceeEEEecCC---C------------eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728 253 --KCLESVIAHDDAVNSIVAGFD---G------------LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL 315 (474)
Q Consensus 253 --~~~~~~~~~~~~v~~v~~~~~---~------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 315 (474)
........|.-.|+++.|.|. | +|++|+.|..|+||+.... .......+.+|.+.|+.+
T Consensus 138 ~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~----~w~~e~~l~~H~dwVRDV 213 (299)
T KOG1332|consen 138 GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD----SWKLERTLEGHKDWVRDV 213 (299)
T ss_pred CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc----chhhhhhhhhcchhhhhh
Confidence 123345679999999999886 1 4999999999999998754 223455688999999999
Q ss_pred EEcCCC----CEEEEEcCCCcEEEeecCccccc--ceeeeecc--eeeEEEEecCCEEEEEeCCCcEEEEECC
Q 047728 316 AISPDA----AIVYCGSSDGLVNFWERELNLSH--GGVLRGHK--LAILCLVTAGNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 316 ~~~~~~----~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~~~--~~v~~~~~~~~~l~sgs~dg~i~iwd~~ 380 (474)
+|.|.- .+|++++.||++.||..+..... ...+.... ..-.++++.|+.|+.++.|+.|.+|.-.
T Consensus 214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 999943 58999999999999987643222 22233323 3346667789999999999999999764
No 106
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=2.2e-27 Score=208.62 Aligned_cols=269 Identities=22% Similarity=0.303 Sum_probs=212.7
Q ss_pred cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 140 EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 140 ~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
....+..|.+.|..+.|- .+.|++|+.|..|++|++...+.... .++.
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~------------------------------~tLa 216 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELI------------------------------STLA 216 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhh------------------------------hhhh
Confidence 345567899999999997 47999999999999999988763321 3445
Q ss_pred eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
+..+.|+++.|.++++++++++.|+.+++|++...+...++.+|.+.|+++.|.... .+++|+.|.+|++||+.....
T Consensus 217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C- 295 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC- 295 (459)
T ss_pred ccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe-
Confidence 577889999999999999999999999999999999999999999999999998777 699999999999999985332
Q ss_pred eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEE
Q 047728 297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICI 376 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~i 376 (474)
.... -..+.+..|+.+ ...+++|..|+.|++||.+..........+.....+.+++++..|.+++.|.++.+
T Consensus 296 -----~kt~-l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~v 367 (459)
T KOG0288|consen 296 -----SKTV-LPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKV 367 (459)
T ss_pred -----eccc-cccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceee
Confidence 1111 112234444444 56788899999999999998877766666666677888899999999999999999
Q ss_pred EECCCCceEEEEeecC--CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCC--C
Q 047728 377 WRRKENEHICLSMLTG--HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHG--V 452 (474)
Q Consensus 377 wd~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~--~ 452 (474)
.|+++.+......-.+ -....+.+.|+|++. |+++||.||.|+||++.+++.. ..+.... .
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~--------YvaAGS~dgsv~iW~v~tgKlE-------~~l~~s~s~~ 432 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS--------YVAAGSADGSVYIWSVFTGKLE-------KVLSLSTSNA 432 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCc--------eeeeccCCCcEEEEEccCceEE-------EEeccCCCCc
Confidence 9999887432222221 123489999999999 9999999999999999998433 3333222 2
Q ss_pred CCCccccCCC
Q 047728 453 APNSLPYAPS 462 (474)
Q Consensus 453 ~v~~l~~~p~ 462 (474)
.|++++|+|+
T Consensus 433 aI~s~~W~~s 442 (459)
T KOG0288|consen 433 AITSLSWNPS 442 (459)
T ss_pred ceEEEEEcCC
Confidence 5999977775
No 107
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=5.1e-26 Score=210.34 Aligned_cols=277 Identities=16% Similarity=0.226 Sum_probs=208.4
Q ss_pred CCEEEEeeCCCcEEEEeCCc--------cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeeccc
Q 047728 120 GDLLYTGSDSKNIRVWKNQR--------EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTL 189 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~~--------~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 189 (474)
..+||.+.+||.|.++|..+ .+..+..|..+|..+.|. ...|++++.|.++++||+.+......
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~------ 137 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG------ 137 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc------
Confidence 45899999999999998542 245677899999999998 45899999999999999998765421
Q ss_pred CccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcc---------------
Q 047728 190 PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYK--------------- 253 (474)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~--------------- 253 (474)
..+.+|+..|.+++|.+ +...|++|+.||.|.|||++-..
T Consensus 138 ------------------------~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~ 193 (720)
T KOG0321|consen 138 ------------------------RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRH 193 (720)
T ss_pred ------------------------eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccc
Confidence 14677999999999999 56788999999999999985321
Q ss_pred ------------eeeeeeecCcc----eeEEEecCCCeEEEeeC-CCcEEEEEcccCCCceeeeeeee--eecc---ccc
Q 047728 254 ------------CLESVIAHDDA----VNSIVAGFDGLVFTGSA-DGTVKVWRRELQGKGTKHFFSQT--LLKQ---ECA 311 (474)
Q Consensus 254 ------------~~~~~~~~~~~----v~~v~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~--~~~~---~~~ 311 (474)
.+...+++... |+.+.|-.+..|++++. |+.|+|||++............. +..+ .-.
T Consensus 194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G 273 (720)
T KOG0321|consen 194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVG 273 (720)
T ss_pred cCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceee
Confidence 01111233333 44455544448888887 99999999986554322221111 1122 446
Q ss_pred EEEEEEcCCCCEEEEEcCCCcEEEeecCccc-ccceeeeecce----eeEEEEecCCEEEEEeCCCcEEEEECCCCceEE
Q 047728 312 VTALAISPDAAIVYCGSSDGLVNFWERELNL-SHGGVLRGHKL----AILCLVTAGNLVFSGSADMSICIWRRKENEHIC 386 (474)
Q Consensus 312 v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~----~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~ 386 (474)
+.++..+..|.+|++.+.|+.|++|++.... .+...+.++.. .-.+++|++.+|++|+.|...++|.+.+.+..
T Consensus 274 ~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~- 352 (720)
T KOG0321|consen 274 QVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP- 352 (720)
T ss_pred eEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC-
Confidence 8889999999999999999999999987542 22223333322 22567899999999999999999999887654
Q ss_pred EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
...+.+|.-.|++++|.|..-. -++++++|.+++||++..+
T Consensus 353 ~~~l~Ght~eVt~V~w~pS~~t-------~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 353 PALLLGHTREVTTVRWLPSATT-------PVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhhhCcceEEEEEeeccccCC-------CceeeccCcceEEEeccCc
Confidence 5678899999999999987653 4788899999999999765
No 108
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.7e-26 Score=202.09 Aligned_cols=285 Identities=21% Similarity=0.328 Sum_probs=218.9
Q ss_pred CcEEEEeCC--ccccccccC-ccCEEE-EEecCCEEEEEe-CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCC
Q 047728 130 KNIRVWKNQ--REFSGFKSN-SGLVKA-IVISNEKIFSGH-QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSN 204 (474)
Q Consensus 130 g~v~vwd~~--~~~~~~~~h-~~~V~~-i~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (474)
.++.+||+. .....+++. ...-.+ -...+.+++++. ....|.+|.+.........
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~-------------------- 77 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQY-------------------- 77 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhh--------------------
Confidence 458999955 334444433 111111 122356666665 3447899998876544311
Q ss_pred eEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCC
Q 047728 205 YIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADG 283 (474)
Q Consensus 205 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg 283 (474)
.--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.|+ +|++|+.||
T Consensus 78 ------------~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 78 ------------IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred ------------cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCc
Confidence 1145689999999999999999899999999999999999999999999999999999 999999999
Q ss_pred cEEEEEcccC---CCceeeeeeeeeecccccEEEEEEcCC--CCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE
Q 047728 284 TVKVWRRELQ---GKGTKHFFSQTLLKQECAVTALAISPD--AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL 358 (474)
Q Consensus 284 ~i~iwd~~~~---~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~ 358 (474)
.|.+|++... .......+...+..|.-+|+.+...+. ..+|++++.|.++++||+..+..+..+........+.+
T Consensus 146 ~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~l 225 (476)
T KOG0646|consen 146 AVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVAL 225 (476)
T ss_pred cEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEE
Confidence 9999986431 111133356778889999999998875 46899999999999999999988877777777778888
Q ss_pred EecCCEEEEEeCCCcEEEEECCCCc--------------eEEEEeecCCcc--ceEEEEEeeCCccccccceEEEEEecC
Q 047728 359 VTAGNLVFSGSADMSICIWRRKENE--------------HICLSMLTGHSG--PVKCLAVEKDDESLSREKRWILYSGSL 422 (474)
Q Consensus 359 ~~~~~~l~sgs~dg~i~iwd~~~~~--------------~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~l~s~s~ 422 (474)
.|.+..+++|+.+|.|.+.++.... ...+..+.+|.+ +|+|++++-|+. +|++|+.
T Consensus 226 Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt--------lLlSGd~ 297 (476)
T KOG0646|consen 226 DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT--------LLLSGDE 297 (476)
T ss_pred cccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc--------EEEeeCC
Confidence 9999999999999999998875322 123556788988 999999999999 9999999
Q ss_pred CCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728 423 DKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP 461 (474)
Q Consensus 423 Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p 461 (474)
||.|+|||+...+ +.+++....++|+.+.+.|
T Consensus 298 dg~VcvWdi~S~Q-------~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 298 DGKVCVWDIYSKQ-------CIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred CCCEEEEecchHH-------HHHHHhhhccccceeEeec
Confidence 9999999998763 3333333445566665543
No 109
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=3e-24 Score=193.48 Aligned_cols=313 Identities=17% Similarity=0.260 Sum_probs=235.2
Q ss_pred eecCcEEEEEEc----CCEEEEe--eCCCcEEEEeCCcc--ccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecC
Q 047728 108 REEGHIYSLAAA----GDLLYTG--SDSKNIRVWKNQRE--FSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVS 176 (474)
Q Consensus 108 ~h~~~i~~~~~~----~~~l~tg--s~dg~v~vwd~~~~--~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~ 176 (474)
.-+..|.|++|+ |.+|+.- +.+..+.|||.++. ....+.....|....|. .+.+++++ .|.+..|+++
T Consensus 152 ~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~ 230 (626)
T KOG2106|consen 152 FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLR 230 (626)
T ss_pred cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEcc
Confidence 445679999997 5566554 33556889997754 33455567778888898 44566655 5579999998
Q ss_pred CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee-ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee
Q 047728 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK-HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL 255 (474)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 255 (474)
.+.......+ +.+ ...-|.|++|.++++ +++|..+|.|.||+..+.+..
T Consensus 231 ~~~l~k~~~~-----------------------------fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~ 280 (626)
T KOG2106|consen 231 GGSLVKRQGI-----------------------------FEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRIS 280 (626)
T ss_pred CCceEEEeec-----------------------------cccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEE
Confidence 8765432221 111 225799999999875 779999999999999888888
Q ss_pred eeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc----------------------------------eeeee
Q 047728 256 ESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG----------------------------------TKHFF 301 (474)
Q Consensus 256 ~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------------------------------~~~~~ 301 (474)
+....|.+.|.+++...+|.|++|+.|..|..||-...+.. ....+
T Consensus 281 k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f 360 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF 360 (626)
T ss_pred eEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence 88889999999999999999999999999999983211100 00002
Q ss_pred eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCC
Q 047728 302 SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKE 381 (474)
Q Consensus 302 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~ 381 (474)
.....+|......++.+|+.+.+++++.|+.+++|+ ..+...............|.|.| .++.|...|...+.|.++
T Consensus 361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~ 437 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTET 437 (626)
T ss_pred eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccc
Confidence 233456778899999999999999999999999999 33344445556667778888889 999999999999999998
Q ss_pred CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728 382 NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP 461 (474)
Q Consensus 382 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p 461 (474)
...+ ..-. ...++++++|+|++. +||.|+.|+.|+||.+....... .......+ .+|+.|
T Consensus 438 ~~lv--~~~~-d~~~ls~v~ysp~G~--------~lAvgs~d~~iyiy~Vs~~g~~y---~r~~k~~g--s~ithL---- 497 (626)
T KOG2106|consen 438 QDLV--TIHT-DNEQLSVVRYSPDGA--------FLAVGSHDNHIYIYRVSANGRKY---SRVGKCSG--SPITHL---- 497 (626)
T ss_pred ceeE--EEEe-cCCceEEEEEcCCCC--------EEEEecCCCeEEEEEECCCCcEE---EEeeeecC--ceeEEe----
Confidence 6633 3333 388999999999999 99999999999999998764322 12222222 667777
Q ss_pred CCCcCCceeeccC
Q 047728 462 SFSSQGRICQKRS 474 (474)
Q Consensus 462 ~~s~Dg~~l~~~s 474 (474)
.||+|++++++.|
T Consensus 498 DwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 498 DWSSDSQFLVSNS 510 (626)
T ss_pred eecCCCceEEecc
Confidence 8899999999875
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.5e-25 Score=198.46 Aligned_cols=282 Identities=21% Similarity=0.323 Sum_probs=222.6
Q ss_pred eeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcc-------------------cccc-ccCccCEEEEEec--C
Q 047728 103 IGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQRE-------------------FSGF-KSNSGLVKAIVIS--N 158 (474)
Q Consensus 103 ~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~-------------------~~~~-~~h~~~V~~i~~~--~ 158 (474)
+..+..|.-+|.|++.. +.++++++.+|+|.=|+.... ...- +.|...|.+++.+ +
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 56778899999998865 779999999999999973210 1111 3788899999998 7
Q ss_pred CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE
Q 047728 159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA 238 (474)
Q Consensus 159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 238 (474)
.+|++|+.|..|.||+.++.+... .|.+|.+.|.+++|-.....|+++
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~--------------------------------~~~ghr~~V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVK--------------------------------VFKGHRGAVSSLAFRKGTSELYSA 262 (479)
T ss_pred cEEEecCCCceEEEecCcccchhh--------------------------------cccccccceeeeeeecCccceeee
Confidence 799999999999999999887542 356799999999999988999999
Q ss_pred ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCe-EEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEE
Q 047728 239 SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAI 317 (474)
Q Consensus 239 s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 317 (474)
+.|+.|++|++.....+.++.+|.+.|..|....-+. +-+|+.|+++++|++.... ...+.++.+.+.|++|
T Consensus 263 s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-------qlifrg~~~sidcv~~ 335 (479)
T KOG0299|consen 263 SADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-------QLIFRGGEGSIDCVAF 335 (479)
T ss_pred ecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-------eeeeeCCCCCeeeEEE
Confidence 9999999999999999999999999999998877774 4555699999999995332 3556778889999999
Q ss_pred cCCCCEEEEEcCCCcEEEeecCcccccceeeeecc-----------eee--EEEEecCCEEEEEeCCCcEEEEECCCC--
Q 047728 318 SPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK-----------LAI--LCLVTAGNLVFSGSADMSICIWRRKEN-- 382 (474)
Q Consensus 318 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-----------~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~-- 382 (474)
-. ...+++|+.+|.|.+|++.+.+.+......|. ..+ +++.+..+++++|+.+|.|++|-+..+
T Consensus 336 In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 336 IN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred ec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 84 45788899999999999987766554444332 134 444567899999999999999999877
Q ss_pred ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 383 EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 383 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
...++..+. -.+-|+.++|++++.. +++..+....+-=|-..
T Consensus 415 ~i~~l~~ls-~~GfVNsl~f~~sgk~-------ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 415 AINLLYSLS-LVGFVNSLAFSNSGKR-------IVAGIGKEHRLGRWWCL 456 (479)
T ss_pred ccceeeecc-cccEEEEEEEccCCCE-------EEEecccccccceeeEe
Confidence 222334444 6688999999999983 55555666666555443
No 111
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=4.1e-25 Score=206.27 Aligned_cols=357 Identities=20% Similarity=0.258 Sum_probs=242.5
Q ss_pred eeeeeeeeecCcEEEEEEc--CC---EEEEeeCCCcEEEEeCC----ccccccccCccCEEEEEecCCEEEEEeCCCeEE
Q 047728 101 VLIGSLVREEGHIYSLAAA--GD---LLYTGSDSKNIRVWKNQ----REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIR 171 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~--~~---~l~tgs~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~ 171 (474)
..+..+.+|.++|+|+.+- .+ ++++|+.||.|++|.+. ..+..+.+|...+.|+.-........+.|+++.
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~ 124 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVS 124 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEE
Confidence 5677899999999999864 33 89999999999999865 234556666555555543333333347999999
Q ss_pred EEecCCCCcce--eeee----------cccCccceeeeeecCCCCeEEEee------eccceeeeccCCeeEEEecCCC-
Q 047728 172 VWKVSSKDASI--HKRV----------GTLPTFKDFIKCSMKPSNYIEVRR------HRNGLWIKHFDAISSLSMSEDQ- 232 (474)
Q Consensus 172 vwd~~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~h~~~V~~l~~~~~~- 232 (474)
+|+.+..+... ...+ ..++..+.++.........+.+.. .+...+.||.+.|.+|+|...+
T Consensus 125 vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~ 204 (764)
T KOG1063|consen 125 VWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG 204 (764)
T ss_pred EeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC
Confidence 99996555111 1111 111211112111111112222211 2234678999999999998743
Q ss_pred --CEEEEEECCCcEEEEEcCCcc---------------------eee----------eeeecCcceeEEEecCCC-eEEE
Q 047728 233 --NLLYSASWDKTFKVWRTSDYK---------------------CLE----------SVIAHDDAVNSIVAGFDG-LVFT 278 (474)
Q Consensus 233 --~~l~s~s~dg~i~iwd~~~~~---------------------~~~----------~~~~~~~~v~~v~~~~~~-~l~~ 278 (474)
-+|++++.|..|+||.+.-+. ... .+.+|++.|+++.|+|.+ .|++
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence 478999999999999764221 111 123899999999999999 9999
Q ss_pred eeCCCcEEEEEcccC-----------CC-----------------------------------ceeeeeeeeeecccccE
Q 047728 279 GSADGTVKVWRRELQ-----------GK-----------------------------------GTKHFFSQTLLKQECAV 312 (474)
Q Consensus 279 ~~~dg~i~iwd~~~~-----------~~-----------------------------------~~~~~~~~~~~~~~~~v 312 (474)
++.|.++.+|..... .. ...........+|...|
T Consensus 285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V 364 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV 364 (764)
T ss_pred cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccc
Confidence 999999999965421 00 00111223345788899
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEeecC-----------------------------------------------------
Q 047728 313 TALAISPDAAIVYCGSSDGLVNFWERE----------------------------------------------------- 339 (474)
Q Consensus 313 ~~l~~~~~~~~l~~~~~dg~i~v~d~~----------------------------------------------------- 339 (474)
+.++|+|.|.+|++.+.|.+-++|-.-
T Consensus 365 ~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l 444 (764)
T KOG1063|consen 365 KDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSL 444 (764)
T ss_pred eeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHH
Confidence 999999999999999999988885310
Q ss_pred ------------------------------------ccc--------------------------------ccceeeeec
Q 047728 340 ------------------------------------LNL--------------------------------SHGGVLRGH 351 (474)
Q Consensus 340 ------------------------------------~~~--------------------------------~~~~~~~~~ 351 (474)
++. .....+.+|
T Consensus 445 ~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH 524 (764)
T KOG1063|consen 445 MAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH 524 (764)
T ss_pred HHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC
Confidence 000 001122356
Q ss_pred ceeeEEE--EecCCEEEEEeCC-----CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC
Q 047728 352 KLAILCL--VTAGNLVFSGSAD-----MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424 (474)
Q Consensus 352 ~~~v~~~--~~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg 424 (474)
...+.|+ +++++++|+++.. ..|++|+..+.. ....+.+|.-.|+.++|+||++ +|++.+.|.
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~--~~~~L~~HsLTVT~l~FSpdg~--------~LLsvsRDR 594 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWL--QVQELEGHSLTVTRLAFSPDGR--------YLLSVSRDR 594 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchh--hhheecccceEEEEEEECCCCc--------EEEEeecCc
Confidence 6666554 5669999998754 468999998776 3568999999999999999999 999999999
Q ss_pred cEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 425 SVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 425 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
++.+|...+...... ....++.|+.-|.+. +|+||++..+++|
T Consensus 595 t~sl~~~~~~~~~e~---~fa~~k~HtRIIWdc----sW~pde~~FaTaS 637 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEF---RFACLKAHTRIIWDC----SWSPDEKYFATAS 637 (764)
T ss_pred eEEeeeeecccchhh---hhccccccceEEEEc----ccCcccceeEEec
Confidence 999999866543322 233466776655544 8888888777765
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.8e-26 Score=187.06 Aligned_cols=250 Identities=20% Similarity=0.300 Sum_probs=199.0
Q ss_pred cccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC
Q 047728 144 FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD 221 (474)
Q Consensus 144 ~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 221 (474)
...|.+.|..+..+ +.+|+|++.|++|+|+.++........ ..+.+|.+
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-----------------------------~~L~Gh~G 57 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-----------------------------AELTGHSG 57 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-----------------------------eEecCCCC
Confidence 35688888777665 999999999999999999887542111 34677999
Q ss_pred CeeEEEecC--CCCEEEEEECCCcEEEEEcCCcc--eeeeeeecCcceeEEEecCCC---eEEEeeCCCcEEEEEcccCC
Q 047728 222 AISSLSMSE--DQNLLYSASWDKTFKVWRTSDYK--CLESVIAHDDAVNSIVAGFDG---LVFTGSADGTVKVWRRELQG 294 (474)
Q Consensus 222 ~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~~---~l~~~~~dg~i~iwd~~~~~ 294 (474)
+|+.++|.. -|.+|++++.||.|.||.-.+++ .......|...|++++|.|.+ .|++++.||.|.|.+.+..+
T Consensus 58 PVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g 137 (299)
T KOG1332|consen 58 PVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG 137 (299)
T ss_pred CeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC
Confidence 999999976 89999999999999999988774 344556799999999999987 89999999999999988652
Q ss_pred CceeeeeeeeeecccccEEEEEEcCC---C-----------CEEEEEcCCCcEEEeecCccc-ccceeeeecceeeEEEE
Q 047728 295 KGTKHFFSQTLLKQECAVTALAISPD---A-----------AIVYCGSSDGLVNFWERELNL-SHGGVLRGHKLAILCLV 359 (474)
Q Consensus 295 ~~~~~~~~~~~~~~~~~v~~l~~~~~---~-----------~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~~v~~~~ 359 (474)
. .........|.-.|++++|.|. | +.|++|+.|..|+||+..... .....+.+|...+..+.
T Consensus 138 ~---w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVA 214 (299)
T KOG1332|consen 138 G---WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVA 214 (299)
T ss_pred C---ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhh
Confidence 1 1123455678889999999995 4 569999999999999988753 33345889998885554
Q ss_pred --ec----CCEEEEEeCCCcEEEEECCCC-ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 360 --TA----GNLVFSGSADMSICIWRRKEN-EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 360 --~~----~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
|. ..+|++++.||++.||..+.. +.-....+......+..+.|+..+. +|+.++.|+.|.+|.-+
T Consensus 215 waP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn--------~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 215 WAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN--------ILAVSGGDNKVTLWKEN 286 (299)
T ss_pred hccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc--------EEEEecCCcEEEEEEeC
Confidence 43 458999999999999987632 1112334555678899999999999 99999999999999854
Q ss_pred C
Q 047728 433 E 433 (474)
Q Consensus 433 ~ 433 (474)
.
T Consensus 287 ~ 287 (299)
T KOG1332|consen 287 V 287 (299)
T ss_pred C
Confidence 3
No 113
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-25 Score=208.73 Aligned_cols=261 Identities=20% Similarity=0.273 Sum_probs=211.3
Q ss_pred EEecC-CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC
Q 047728 154 IVISN-EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ 232 (474)
Q Consensus 154 i~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 232 (474)
+.|+. +.|++|. ...|.+|+..++.......+ +...|+++.|+++|
T Consensus 183 ldWss~n~laVal-g~~vylW~~~s~~v~~l~~~--------------------------------~~~~vtSv~ws~~G 229 (484)
T KOG0305|consen 183 LDWSSANVLAVAL-GQSVYLWSASSGSVTELCSF--------------------------------GEELVTSVKWSPDG 229 (484)
T ss_pred hhcccCCeEEEEe-cceEEEEecCCCceEEeEec--------------------------------CCCceEEEEECCCC
Confidence 45553 3455544 45699999998874332211 36789999999999
Q ss_pred CEEEEEECCCcEEEEEcCCcceeeeeee-cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc
Q 047728 233 NLLYSASWDKTFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA 311 (474)
Q Consensus 233 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 311 (474)
.+|++|..+|.|.|||..+.+.+..+.. |...|-+++|. ...+.+|+.|+.|..+|++..... ...+.+|...
T Consensus 230 ~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~-----~~~~~~H~qe 303 (484)
T KOG0305|consen 230 SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHV-----VSTLQGHRQE 303 (484)
T ss_pred CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc-CceEEEecCCCcEEEEEEecchhh-----hhhhhcccce
Confidence 9999999999999999999999999998 99999999998 448999999999999999976542 2247889999
Q ss_pred EEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe---cCCEEEEEe--CCCcEEEEECCCCceEE
Q 047728 312 VTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT---AGNLVFSGS--ADMSICIWRRKENEHIC 386 (474)
Q Consensus 312 v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~sgs--~dg~i~iwd~~~~~~~~ 386 (474)
|..+.|++++.++++|+.|+.+.|||..... +...+..|...|.++.+ ...+||+|+ .|+.|++||..++..
T Consensus 304 VCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-- 380 (484)
T KOG0305|consen 304 VCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-- 380 (484)
T ss_pred eeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE--
Confidence 9999999999999999999999999995544 44667789988877765 478999875 799999999998873
Q ss_pred EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcC
Q 047728 387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQ 466 (474)
Q Consensus 387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~D 466 (474)
+..+. -.+.|..|.|++..+.+ +..-|-.++.|.||++.+. .....+.+|..+|..+ +.|||
T Consensus 381 i~~vd-tgsQVcsL~Wsk~~kEi------~sthG~s~n~i~lw~~ps~-------~~~~~l~gH~~RVl~l----a~SPd 442 (484)
T KOG0305|consen 381 IDSVD-TGSQVCSLIWSKKYKEL------LSTHGYSENQITLWKYPSM-------KLVAELLGHTSRVLYL----ALSPD 442 (484)
T ss_pred ecccc-cCCceeeEEEcCCCCEE------EEecCCCCCcEEEEecccc-------ceeeeecCCcceeEEE----EECCC
Confidence 33333 45689999999998631 3333456789999999885 5677889999999888 88999
Q ss_pred CceeeccC
Q 047728 467 GRICQKRS 474 (474)
Q Consensus 467 g~~l~~~s 474 (474)
|..+++++
T Consensus 443 g~~i~t~a 450 (484)
T KOG0305|consen 443 GETIVTGA 450 (484)
T ss_pred CCEEEEec
Confidence 99998864
No 114
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=2.6e-25 Score=198.37 Aligned_cols=237 Identities=16% Similarity=0.253 Sum_probs=194.5
Q ss_pred eccCCeeEEEecCC-CCEEEEEECCCcEEEEEcCCcc----------eeeeeeecCcceeEEEecCCC--eEEEeeCCCc
Q 047728 218 KHFDAISSLSMSED-QNLLYSASWDKTFKVWRTSDYK----------CLESVIAHDDAVNSIVAGFDG--LVFTGSADGT 284 (474)
Q Consensus 218 ~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~ 284 (474)
.|.+.|+.+.+.|. ..++++.+..+.|.|||..+.. +-..+.+|...-..+.|++.. .+++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 49999999999995 4667778889999999986422 223678899877889999876 9999999999
Q ss_pred EEEEEcccCCCc-eeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCc-ccccceeeeecceeeEEEEe-
Q 047728 285 VKVWRRELQGKG-TKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWEREL-NLSHGGVLRGHKLAILCLVT- 360 (474)
Q Consensus 285 i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~v~~~~~- 360 (474)
|++||+...... ........+.+|...|..++|++ +...+++++.|+.+.|||+++ .........+|...+.|+.+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 999999876553 33455677889999999999999 667889999999999999997 44455667789999988876
Q ss_pred --cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCC
Q 047728 361 --AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL 438 (474)
Q Consensus 361 --~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~ 438 (474)
++..||+|+.|++|++||+++... ++..+.+|...|.+|.|+|.... +||+++.|+.+.|||+..-....
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~et-------vLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHNET-------VLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCCCc-------eeEecccCCcEEEEecccccccc
Confidence 478999999999999999998776 47899999999999999999876 89999999999999997643221
Q ss_pred C-------CCcccccccCCCCCCCccccCCC
Q 047728 439 V-------STTQQHPLEGHGVAPNSLPYAPS 462 (474)
Q Consensus 439 ~-------~~~~~~~~~~~~~~v~~l~~~p~ 462 (474)
. ....+..-.||...|+...|+|.
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ 384 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPN 384 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCC
Confidence 1 11233344689999999999984
No 115
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=8.8e-26 Score=210.76 Aligned_cols=240 Identities=25% Similarity=0.387 Sum_probs=203.5
Q ss_pred cccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728 140 EFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218 (474)
Q Consensus 140 ~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
..+.+.+|..-|..+++. +..+++++.||++++|+-..++.... ..+.+
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~------------------------------~~~~~ 55 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLET------------------------------HAFEG 55 (745)
T ss_pred eEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccc------------------------------eeccc
Confidence 345678999999998887 55799999999999999866654321 12344
Q ss_pred ccCCeeE-EEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc
Q 047728 219 HFDAISS-LSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 219 h~~~V~~-l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
|.+-|.+ +++-+ ++-.|++|+.|.+|.+|...+..++..+++|+..|.++....++.+++|+.|.++++|....
T Consensus 56 ~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~---- 131 (745)
T KOG0301|consen 56 PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE---- 131 (745)
T ss_pred CcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh----
Confidence 6666766 78876 55679999999999999999999999999999999999988888999999999999997653
Q ss_pred eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe-cCCEEEEEeCCCcEE
Q 047728 297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT-AGNLVFSGSADMSIC 375 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sgs~dg~i~ 375 (474)
+...+.+|...|++++.-|++ .+++|+.|.+|++|.-. ...+.+.+|...|..+.. ++..+++++.||.|+
T Consensus 132 ----l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir 203 (745)
T KOG0301|consen 132 ----LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIR 203 (745)
T ss_pred ----hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCCCeEeecCCceEE
Confidence 234588999999999999988 88899999999999863 344678889999988876 566899999999999
Q ss_pred EEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 376 iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
+|++. ++ ++..+.+|+.-|.++....++. .++++++|++++||+..
T Consensus 204 ~w~~~-ge--~l~~~~ghtn~vYsis~~~~~~--------~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 204 LWDLD-GE--VLLEMHGHTNFVYSISMALSDG--------LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEecc-Cc--eeeeeeccceEEEEEEecCCCC--------eEEEecCCceEEEeecC
Confidence 99994 44 5788999999999999777776 89999999999999987
No 116
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=7.1e-26 Score=211.75 Aligned_cols=288 Identities=19% Similarity=0.289 Sum_probs=225.1
Q ss_pred eeeeeeecCcEEEEEEc-------------CCEEEEeeCCCcEEEEeCCcc----c-----------c---------c--
Q 047728 103 IGSLVREEGHIYSLAAA-------------GDLLYTGSDSKNIRVWKNQRE----F-----------S---------G-- 143 (474)
Q Consensus 103 ~~~l~~h~~~i~~~~~~-------------~~~l~tgs~dg~v~vwd~~~~----~-----------~---------~-- 143 (474)
...+.-|...||.+.-- ..-++|++.|++||+|++... + . .
T Consensus 362 ~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~ 441 (1080)
T KOG1408|consen 362 CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMH 441 (1080)
T ss_pred eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhh
Confidence 34566678888876521 336899999999999984320 0 0 0
Q ss_pred -------------cccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEE
Q 047728 144 -------------FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208 (474)
Q Consensus 144 -------------~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (474)
.-.....+.+++++ +++|++|..-|.++||++...+...
T Consensus 442 d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~-------------------------- 495 (1080)
T KOG1408|consen 442 DASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC-------------------------- 495 (1080)
T ss_pred hccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh--------------------------
Confidence 01123467888887 7799999999999999998765432
Q ss_pred eeeccceeeeccCCeeEEEecC---CCCEEEEEECCCcEEEEEcC-CcceeeeeeecCcceeEEEecCCC---eEEEeeC
Q 047728 209 RRHRNGLWIKHFDAISSLSMSE---DQNLLYSASWDKTFKVWRTS-DYKCLESVIAHDDAVNSIVAGFDG---LVFTGSA 281 (474)
Q Consensus 209 ~~~~~~~~~~h~~~V~~l~~~~---~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~v~~~~~~---~l~~~~~ 281 (474)
....|..+|.|+.|+. ..++|++++.|.-|+|||+. +..++.++.+|...|+++.|...| .+++++.
T Consensus 496 ------~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGA 569 (1080)
T KOG1408|consen 496 ------FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA 569 (1080)
T ss_pred ------heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccC
Confidence 2234999999999986 45789999999999999985 456788999999999999998877 7999999
Q ss_pred CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee--ecceee--EE
Q 047728 282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR--GHKLAI--LC 357 (474)
Q Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~~v--~~ 357 (474)
|..|.+--.+. ......+...+.......+..+++.|..+++++++.|..|+|||++.++....+.. +|.+.. +.
T Consensus 570 DksimFr~~qk-~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~ 648 (1080)
T KOG1408|consen 570 DKSIMFRVNQK-ASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI 648 (1080)
T ss_pred chhhheehhcc-ccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEE
Confidence 98876433221 11122222233333456789999999999999999999999999999877654433 343444 45
Q ss_pred EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 358 LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 358 ~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
+.|.|.||++...|.++.++|..+++ |+..+.+|...|+.+.|.+|-+ .|++.+.||.|.||.+..
T Consensus 649 lDPSgiY~atScsdktl~~~Df~sgE--cvA~m~GHsE~VTG~kF~nDCk--------HlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 649 LDPSGIYLATSCSDKTLCFVDFVSGE--CVAQMTGHSEAVTGVKFLNDCK--------HLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ECCCccEEEEeecCCceEEEEeccch--hhhhhcCcchheeeeeecccch--------hheeecCCceEEEEECch
Confidence 56789999999999999999999999 8899999999999999999999 899999999999999864
No 117
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.2e-25 Score=202.37 Aligned_cols=275 Identities=18% Similarity=0.306 Sum_probs=216.9
Q ss_pred eeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCccc-----cccc--cCccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728 106 LVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREF-----SGFK--SNSGLVKAIVIS--NEKIFSGHQDGKIRVWK 174 (474)
Q Consensus 106 l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~-----~~~~--~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd 174 (474)
...|-.-|.++..+ .++++||+. |.|+|||+.+.. ..+. .....|.++... ++.|++|+.-.++.|||
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 33566667777766 678999985 679999965432 1121 123455555554 78999999999999999
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC 254 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 254 (474)
+.........+.. ...-.+.+++.+||.+..+++..||.|.|||+.+...
T Consensus 494 LAapTprikaelt------------------------------ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 494 LAAPTPRIKAELT------------------------------SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred ccCCCcchhhhcC------------------------------CcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 9876543322211 1334577899999999999999999999999999999
Q ss_pred eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728 255 LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV 333 (474)
Q Consensus 255 ~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 333 (474)
++.|.+|.+.+.||.+++|| .|.+|+-|.+||.||++...+. ......+.|.++..+|++.+|++|-.++.+
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql-------qqhdF~SQIfSLg~cP~~dWlavGMens~v 616 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL-------QQHDFSSQIFSLGYCPTGDWLAVGMENSNV 616 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh-------hhhhhhhhheecccCCCccceeeecccCcE
Confidence 99999999999999999999 9999999999999999976542 122335679999999999999999999999
Q ss_pred EEeecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccc
Q 047728 334 NFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSR 411 (474)
Q Consensus 334 ~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 411 (474)
.+........ ..+.-|...|+++ ++.|+++++.+.|+.+..|..--+.. ++..+ ..+.|.++.++.|++
T Consensus 617 evlh~skp~k--yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas--iFqsk-E~SsVlsCDIS~ddk---- 687 (705)
T KOG0639|consen 617 EVLHTSKPEK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--IFQSK-ESSSVLSCDISFDDK---- 687 (705)
T ss_pred EEEecCCccc--eeecccccEEEEEEecccCceeeecCchhhhhhccCccccc--eeecc-ccCcceeeeeccCce----
Confidence 8887765544 3455677777655 45799999999999999999877763 34443 457899999999999
Q ss_pred cceEEEEEecCCCcEEEEEc
Q 047728 412 EKRWILYSGSLDKSVKMWRV 431 (474)
Q Consensus 412 ~~~~~l~s~s~Dg~i~vw~~ 431 (474)
+++||+.|....||.+
T Consensus 688 ----yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 688 ----YIVTGSGDKKATVYEV 703 (705)
T ss_pred ----EEEecCCCcceEEEEE
Confidence 9999999999999876
No 118
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=3.8e-25 Score=195.79 Aligned_cols=271 Identities=19% Similarity=0.260 Sum_probs=218.7
Q ss_pred cCEEEEEecC--CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEE
Q 047728 149 GLVKAIVISN--EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL 226 (474)
Q Consensus 149 ~~V~~i~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 226 (474)
..++++...+ +.+++|+.|..+.++|...++.. .++.||...|+.+
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l--------------------------------~~~~Gh~kki~~v 267 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL--------------------------------ATLKGHTKKITSV 267 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhh--------------------------------hhccCcceEEEEE
Confidence 3567777764 79999999999999999888764 3567899999999
Q ss_pred EecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeee
Q 047728 227 SMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL 305 (474)
Q Consensus 227 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 305 (474)
.++++...+++++.|..|+||......+......|..+|+.+..+|.| +|++++.|++..+.|++.+.... ....
T Consensus 268 ~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt----~vs~ 343 (506)
T KOG0289|consen 268 KFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLT----VVSD 343 (506)
T ss_pred EeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEE----EEee
Confidence 999999999999999999999998888888889999999999999999 99999999999999998765411 1111
Q ss_pred ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCc
Q 047728 306 LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENE 383 (474)
Q Consensus 306 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~ 383 (474)
....-.+++++|+|||.+|.+|..|+.|++||+..+... ..+.+|.++|..+++ +|-+|+++++|+.|++||++..+
T Consensus 344 ~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~-a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 344 ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV-AKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc-ccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence 134456999999999999999999999999999988744 566789999977776 68899999999999999999776
Q ss_pred eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCC
Q 047728 384 HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSF 463 (474)
Q Consensus 384 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~ 463 (474)
......+... .+|.++.|.+.|. +|+.++.|=.|++++-.+. .+ .+...+..|.+..+.+ .|
T Consensus 423 n~kt~~l~~~-~~v~s~~fD~SGt--------~L~~~g~~l~Vy~~~k~~k--~W---~~~~~~~~~sg~st~v----~F 484 (506)
T KOG0289|consen 423 NFKTIQLDEK-KEVNSLSFDQSGT--------YLGIAGSDLQVYICKKKTK--SW---TEIKELADHSGLSTGV----RF 484 (506)
T ss_pred ccceeecccc-ccceeEEEcCCCC--------eEEeecceeEEEEEecccc--cc---eeeehhhhccccccee----ee
Confidence 4433344333 3799999999999 8999977755555543332 22 4455566677667777 78
Q ss_pred CcCCceeeccC
Q 047728 464 SSQGRICQKRS 474 (474)
Q Consensus 464 s~Dg~~l~~~s 474 (474)
..+.++|+++|
T Consensus 485 g~~aq~l~s~s 495 (506)
T KOG0289|consen 485 GEHAQYLASTS 495 (506)
T ss_pred cccceEEeecc
Confidence 88888888765
No 119
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.5e-24 Score=184.04 Aligned_cols=253 Identities=16% Similarity=0.260 Sum_probs=192.5
Q ss_pred ccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCC
Q 047728 145 KSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDA 222 (474)
Q Consensus 145 ~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 222 (474)
.+|.+.|.++.|+ |+++++|+.|++|+|||.+......... ..|+.|.+.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----------------------------s~Wrah~~S 61 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT----------------------------SSWRAHDGS 61 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe----------------------------eeEEecCCc
Confidence 4688899999998 9999999999999999986654433221 356779999
Q ss_pred eeEEEecC--CCCEEEEEECCCcEEEEEcCC---------cceeeeeeecCcceeEEEecCCC---eEEEeeCCCcEEEE
Q 047728 223 ISSLSMSE--DQNLLYSASWDKTFKVWRTSD---------YKCLESVIAHDDAVNSIVAGFDG---LVFTGSADGTVKVW 288 (474)
Q Consensus 223 V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~v~~~~~~---~l~~~~~dg~i~iw 288 (474)
|..+.|.+ -|+.+++++.|+++.||.-.. -....++......|+++.|.|.. ++++++.||.||||
T Consensus 62 i~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY 141 (361)
T KOG2445|consen 62 IWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY 141 (361)
T ss_pred EEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence 99999976 689999999999999997521 12344566677899999999975 89999999999999
Q ss_pred EcccCCCceeeeeeeee-------ecccccEEEEEEcC---CCCEEEEEcCC-----CcEEEeecCccc---ccceeeee
Q 047728 289 RRELQGKGTKHFFSQTL-------LKQECAVTALAISP---DAAIVYCGSSD-----GLVNFWERELNL---SHGGVLRG 350 (474)
Q Consensus 289 d~~~~~~~~~~~~~~~~-------~~~~~~v~~l~~~~---~~~~l~~~~~d-----g~i~v~d~~~~~---~~~~~~~~ 350 (474)
+...........+...+ ..+..+..|+.|+| ...+|++|+.+ +.++||...... .....+.+
T Consensus 142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 87654433332222222 24667889999998 45678888776 478888765432 22234558
Q ss_pred cceeeEEEEe--c----CCEEEEEeCCCcEEEEECCCCc------------------eEEEEeecCCccceEEEEEeeCC
Q 047728 351 HKLAILCLVT--A----GNLVFSGSADMSICIWRRKENE------------------HICLSMLTGHSGPVKCLAVEKDD 406 (474)
Q Consensus 351 ~~~~v~~~~~--~----~~~l~sgs~dg~i~iwd~~~~~------------------~~~~~~~~~h~~~v~~l~~~~~~ 406 (474)
|..+|..+++ + -.+||+++.|| |+||.+.... ...+..+.+|.+.|..+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 8888866655 3 35899999999 9999987311 22356688999999999999999
Q ss_pred ccccccceEEEEEecCCCcEEEEEccCC
Q 047728 407 ESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 407 ~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
. +|++.|.||.||+|...-.
T Consensus 301 t--------iLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 301 T--------ILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred e--------EEeecCCCceeeehhhhhh
Confidence 8 9999999999999986543
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=2.9e-24 Score=193.61 Aligned_cols=323 Identities=21% Similarity=0.288 Sum_probs=231.6
Q ss_pred CcEEEEEEc-CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeee
Q 047728 111 GHIYSLAAA-GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRV 186 (474)
Q Consensus 111 ~~i~~~~~~-~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 186 (474)
..|.|+.|. +.-++||.++|+|.||+.+ +..+....|.+.|.+++.- +..|++|+.|..|..||-+-. . .+.
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~-k---~r~ 322 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYR-K---LRE 322 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecccccc-c---ccc
Confidence 569999998 5578999999999999844 3344444899999999987 668999999999999992221 1 111
Q ss_pred cccCccceeeeeecCCCCeEEEeeec------------cceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728 187 GTLPTFKDFIKCSMKPSNYIEVRRHR------------NGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC 254 (474)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 254 (474)
.++|.....+........-+.+-..+ ..+..+|.+..+.++.+|+..++++++.|+.+++|+ ..++
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~ 400 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL 400 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce
Confidence 22232222222222111112222222 233467999999999999999999999999999999 4454
Q ss_pred eeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEE
Q 047728 255 LESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVN 334 (474)
Q Consensus 255 ~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 334 (474)
+.+.. -..++.|+.|+|.|.++.|...|...+.|.++... ........++++++|+|+|.+||+|+.|+.|+
T Consensus 401 ~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~l-------v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 401 EWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLDTETQDL-------VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred eEEEE-ecCceeEeeccCcceEEEeeccceEEEEeccccee-------EEEEecCCceEEEEEcCCCCEEEEecCCCeEE
Confidence 44443 46788999999999999999999999999886432 23333388999999999999999999999999
Q ss_pred EeecCcccccceee-eecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceE------------EE---E-eecCCcc
Q 047728 335 FWERELNLSHGGVL-RGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHI------------CL---S-MLTGHSG 395 (474)
Q Consensus 335 v~d~~~~~~~~~~~-~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~------------~~---~-~~~~h~~ 395 (474)
+|-+.......... +.+..++ +.++.|+++|.+-+.|-.|..|....-... |. . ....|..
T Consensus 473 iy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t 552 (626)
T KOG2106|consen 473 IYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGT 552 (626)
T ss_pred EEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCc
Confidence 99886653332222 2222444 566778999999999999999944322110 00 0 0123444
Q ss_pred ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCcccc
Q 047728 396 PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPY 459 (474)
Q Consensus 396 ~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 459 (474)
.|..++-+.... ++++|.+.|.|++|...-.++. ...+...+|+..|++++|
T Consensus 553 ~i~a~~rs~~~~--------~lA~gdd~g~v~lf~yPc~s~r----A~~he~~ghs~~vt~V~F 604 (626)
T KOG2106|consen 553 DINAVARSHCEK--------LLASGDDFGKVHLFSYPCSSPR----APSHEYGGHSSHVTNVAF 604 (626)
T ss_pred hHHHhhhhhhhh--------hhhccccCceEEEEccccCCCc----ccceeeccccceeEEEEE
Confidence 566666666666 8999999999999997654433 567888999999999943
No 121
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2.9e-25 Score=217.80 Aligned_cols=280 Identities=20% Similarity=0.259 Sum_probs=207.6
Q ss_pred CccCEEEEEec--CCEEEEEe--CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCC
Q 047728 147 NSGLVKAIVIS--NEKIFSGH--QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDA 222 (474)
Q Consensus 147 h~~~V~~i~~~--~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 222 (474)
+...|.+|..+ +..++||+ .||.++||+.+.-......... ...........|.+.
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~--------------------~l~k~l~~m~~h~~s 71 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNE--------------------NLPKHLCTMDDHDGS 71 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhc--------------------ccchhheeeccccCc
Confidence 45568888887 56899999 9999999997653211000000 011122344569999
Q ss_pred eeEEEecCCCCEEEEEECCCcEEEEEcCC------------------cceeeeeeecCcceeEEEecCCC-eEEEeeCCC
Q 047728 223 ISSLSMSEDQNLLYSASWDKTFKVWRTSD------------------YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADG 283 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg 283 (474)
|+|+.|++||++||+|++|+.|.||+... .+++..+.+|...|..++|+|++ ++++++.|+
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn 151 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDN 151 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccc
Confidence 99999999999999999999999998762 13667788999999999999999 999999999
Q ss_pred cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeec--------ceee
Q 047728 284 TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGH--------KLAI 355 (474)
Q Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--------~~~v 355 (474)
+|.|||.++.. ....+.+|.+.|..+.|+|-|++|++-+.|++|++|....-... ..+..+ ...-
T Consensus 152 sViiwn~~tF~------~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~-k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 152 SVIIWNAKTFE------LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE-KSITKPFEESPLTTFFLR 224 (942)
T ss_pred eEEEEccccce------eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee-EeeccchhhCCCcceeee
Confidence 99999987663 57888999999999999999999999999999999996553222 222211 1233
Q ss_pred EEEEecCCEEEEEeC----CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcc------cc-cc-ce-EEEEEecC
Q 047728 356 LCLVTAGNLVFSGSA----DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDES------LS-RE-KR-WILYSGSL 422 (474)
Q Consensus 356 ~~~~~~~~~l~sgs~----dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~------~~-~~-~~-~~l~s~s~ 422 (474)
++++|||++|++... -.++.|.+..+.+ .-..+-+|.+++.+++|+|.--. .. +. .. .++|+|+.
T Consensus 225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk--~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq 302 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWK--VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ 302 (942)
T ss_pred cccCCCcCeecchhhccCCcceeEEEecCCce--eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence 778899999998753 3578888886655 56688999999999999984210 00 01 11 37999999
Q ss_pred CCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728 423 DKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP 461 (474)
Q Consensus 423 Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p 461 (474)
|++|.||......|... .+.+ -...|..++|+|
T Consensus 303 DrSlSVW~T~~~RPl~v----i~~l--f~~SI~DmsWsp 335 (942)
T KOG0973|consen 303 DRSLSVWNTALPRPLFV----IHNL--FNKSIVDMSWSP 335 (942)
T ss_pred CccEEEEecCCCCchhh----hhhh--hcCceeeeeEcC
Confidence 99999999966544322 1222 344688885554
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.1e-25 Score=202.47 Aligned_cols=273 Identities=18% Similarity=0.243 Sum_probs=215.4
Q ss_pred ccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCC
Q 047728 145 KSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDA 222 (474)
Q Consensus 145 ~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 222 (474)
..|...|.++.++ .++++||+.. .|+|||+....... .+..+.- .....-
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkg-cVKVWdis~pg~k~--PvsqLdc-------------------------l~rdny 467 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISQPGNKS--PVSQLDC-------------------------LNRDNY 467 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCC-eEEEeeccCCCCCC--ccccccc-------------------------cCcccc
Confidence 3588889999998 5688888865 59999997652211 1111100 113456
Q ss_pred eeEEEecCCCCEEEEEECCCcEEEEEcCCccee--eeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceee
Q 047728 223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL--ESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKH 299 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~ 299 (474)
|.++.+.||++.|++|+.-.+|.|||+...... ..+....-..++++.+||. ..+++..||.|.|||++.+.
T Consensus 468 iRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~----- 542 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT----- 542 (705)
T ss_pred eeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-----
Confidence 889999999999999999999999999765432 3333334567889999998 88999999999999998654
Q ss_pred eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEEC
Q 047728 300 FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRR 379 (474)
Q Consensus 300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~ 379 (474)
....+.+|...+.||.++++|..|.+|+-|.+|+.||++.+..+.+.........+..+|.+.+|+.|-+++.+.|-..
T Consensus 543 -~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 543 -LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred -eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEec
Confidence 4788999999999999999999999999999999999998877655444444444556788999999999999999988
Q ss_pred CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCcccc
Q 047728 380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPY 459 (474)
Q Consensus 380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 459 (474)
...+ ...+.-|.+.|.++.|.+-|+ ++++.+.|..+..|...-+...... .....|.++
T Consensus 622 skp~---kyqlhlheScVLSlKFa~cGk--------wfvStGkDnlLnawrtPyGasiFqs--------kE~SsVlsC-- 680 (705)
T KOG0639|consen 622 SKPE---KYQLHLHESCVLSLKFAYCGK--------WFVSTGKDNLLNAWRTPYGASIFQS--------KESSSVLSC-- 680 (705)
T ss_pred CCcc---ceeecccccEEEEEEecccCc--------eeeecCchhhhhhccCccccceeec--------cccCcceee--
Confidence 7665 456778999999999999999 9999999999999999887543221 123345555
Q ss_pred CCCCCcCCceeeccC
Q 047728 460 APSFSSQGRICQKRS 474 (474)
Q Consensus 460 ~p~~s~Dg~~l~~~s 474 (474)
..|.|.+++|++|
T Consensus 681 --DIS~ddkyIVTGS 693 (705)
T KOG0639|consen 681 --DISFDDKYIVTGS 693 (705)
T ss_pred --eeccCceEEEecC
Confidence 7899999999987
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.8e-26 Score=213.18 Aligned_cols=242 Identities=17% Similarity=0.244 Sum_probs=194.8
Q ss_pred EEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEE
Q 047728 151 VKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLS 227 (474)
Q Consensus 151 V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 227 (474)
+..|.|. .++|+|++..|.|.+||+...... . ....|..|+..|+++.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn--k---------------------------~l~~f~EH~Rs~~~ld 140 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN--K---------------------------LLTVFNEHERSANKLD 140 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccc--h---------------------------hhhHhhhhccceeeee
Confidence 3445555 679999999999999999873110 0 0124556999999999
Q ss_pred ecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeee
Q 047728 228 MSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQT 304 (474)
Q Consensus 228 ~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 304 (474)
|++ ...+|++|+.||+|++||++..+...++.+....|+++.|+|.. .++++...|.+++||+|...+ ....
T Consensus 141 fh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-----~~~k 215 (839)
T KOG0269|consen 141 FHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-----CEKK 215 (839)
T ss_pred eccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh-----HHHH
Confidence 999 56789999999999999999999999998889999999999976 899999999999999997765 5677
Q ss_pred eecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEec-CCEEEEEe--CCCcEEEEEC
Q 047728 305 LLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTA-GNLVFSGS--ADMSICIWRR 379 (474)
Q Consensus 305 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~-~~~l~sgs--~dg~i~iwd~ 379 (474)
+..|.++|.|+.|+|++.+||+|+.|+.|+|||....+...........++ +.+.|. ...|++++ .|-.|+|||+
T Consensus 216 ~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 216 LTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred hhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEee
Confidence 889999999999999999999999999999999986644333322233333 555565 45667666 5789999999
Q ss_pred CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+..- ++..++..|...++.++|...... .|.+++.||+|..-.+.+.
T Consensus 296 rRPY-IP~~t~~eH~~~vt~i~W~~~d~~-------~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 296 RRPY-IPYATFLEHTDSVTGIAWDSGDRI-------NLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred cccc-ccceeeeccCccccceeccCCCce-------eeEeecCccHHHHhhhhcc
Confidence 8664 347788999999999999874433 8999999999987776654
No 124
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.8e-24 Score=205.26 Aligned_cols=262 Identities=18% Similarity=0.227 Sum_probs=208.0
Q ss_pred eecCcEEEEEE--cCCEEEEeeCCCcEEEEeCCc---cccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcce
Q 047728 108 REEGHIYSLAA--AGDLLYTGSDSKNIRVWKNQR---EFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASI 182 (474)
Q Consensus 108 ~h~~~i~~~~~--~~~~l~tgs~dg~v~vwd~~~---~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 182 (474)
.|++.-+.+++ +|++|++++.||.|++|+... .-..+..+...|.+++....+|++|+.+++|.+|.+..++..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~- 89 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED- 89 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc-
Confidence 45555555554 599999999999999998442 223333388899999999999999999999999999988653
Q ss_pred eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecC
Q 047728 183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHD 262 (474)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 262 (474)
..+..-+-++++++|+-+|++++.|+.|-.|++.++.+......+.+|+
T Consensus 90 -------------------------------~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ 138 (933)
T KOG1274|consen 90 -------------------------------TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD 138 (933)
T ss_pred -------------------------------ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC
Confidence 1233356689999999999999999999999999999999999999999
Q ss_pred cceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeee--eecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728 263 DAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQT--LLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339 (474)
Q Consensus 263 ~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~ 339 (474)
.+|.++.++|++ +|++.+.||.|++||+..+........... .......+..++|+|++..+++...|+.|++|+..
T Consensus 139 apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence 999999999999 999999999999999986543221111111 11124567889999999999999999999999988
Q ss_pred cccccceeeeecc---eeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728 340 LNLSHGGVLRGHK---LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 340 ~~~~~~~~~~~~~---~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
...........+. ..++.|+|+|+|||+++.||.|.|||+++.+ . ......|.+++|.|+..
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~---~---~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE---R---HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch---h---ccccceeEEEecCCCCC
Confidence 7765544433322 4457788999999999999999999998733 1 23446799999999987
No 125
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=3.7e-23 Score=197.09 Aligned_cols=356 Identities=21% Similarity=0.268 Sum_probs=258.6
Q ss_pred cceeeeeeeeecCcEEEEEEcCCEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCC
Q 047728 99 PNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSS 177 (474)
Q Consensus 99 ~~~~~~~l~~h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~ 177 (474)
...++..-..+...|.|++.+.+++++|+.. .|.+|..+ .....+..|.+.|.-+..-|+.++++..++.+.||+...
T Consensus 65 kl~ll~vs~~lp~~I~alas~~~~vy~A~g~-~i~~~~rgk~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~ 143 (910)
T KOG1539|consen 65 KLNLLFVSKPLPDKITALASDKDYVYVASGN-KIYAYARGKHIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSS 143 (910)
T ss_pred ceEEEEecCCCCCceEEEEecCceEEEecCc-EEEEEEccceEEEEeccccceEEEEeeecceEEEEEccCcEEEEEecc
Confidence 3344444456778899999999999988754 69999877 445667788889999999999999999999999999988
Q ss_pred CCcceeeeecccCccceeeeeecCCCCeEE------------Eee----eccceeeeccCCeeEEEecCCCCEEEEEECC
Q 047728 178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIE------------VRR----HRNGLWIKHFDAISSLSMSEDQNLLYSASWD 241 (474)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d 241 (474)
.+.....+....+...+++....+|..|+. ++. ....++.++...|+++.-+|--..++.|..+
T Consensus 144 ~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~ 223 (910)
T KOG1539|consen 144 IQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLEN 223 (910)
T ss_pred ccccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccC
Confidence 522212223333344444555555554442 222 1224567888999999999988899999999
Q ss_pred CcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC
Q 047728 242 KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP 319 (474)
Q Consensus 242 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 319 (474)
|+|.+++++.++.+.+++...+.|+.+.|..|| .+++|+..|.+.+||++.... .......|.+.|..+.|.|
T Consensus 224 G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl-----~~v~~nah~~sv~~~~fl~ 298 (910)
T KOG1539|consen 224 GTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL-----INVTRNAHYGSVTGATFLP 298 (910)
T ss_pred ceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee-----eeeeeccccCCcccceecC
Confidence 999999999999999998667999999999999 889999999999999985433 1222234445555555555
Q ss_pred CCCEEEEEcCCCcEEEe-----------------------------------------------ecCcc-------c---
Q 047728 320 DAAIVYCGSSDGLVNFW-----------------------------------------------ERELN-------L--- 342 (474)
Q Consensus 320 ~~~~l~~~~~dg~i~v~-----------------------------------------------d~~~~-------~--- 342 (474)
....+++++.|+.+++| ++... .
T Consensus 299 ~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~ 378 (910)
T KOG1539|consen 299 GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN 378 (910)
T ss_pred CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence 55555555555544443 31000 0
Q ss_pred -----c-------------------------------------------------cceeeee--------cceeeEEEEe
Q 047728 343 -----S-------------------------------------------------HGGVLRG--------HKLAILCLVT 360 (474)
Q Consensus 343 -----~-------------------------------------------------~~~~~~~--------~~~~v~~~~~ 360 (474)
. ....... -....+|+++
T Consensus 379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 0 0000001 1133467778
Q ss_pred cCCEEEEEeCCCcEEEEECCCCceEEEEee---cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728 361 AGNLVFSGSADMSICIWRRKENEHICLSML---TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP 437 (474)
Q Consensus 361 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~ 437 (474)
.|++.+.|...|.|-+|+++++-. ...+ ..|.++|++++...-++ .+++++.||.+++|++.+....
T Consensus 459 CGNF~~IG~S~G~Id~fNmQSGi~--r~sf~~~~ah~~~V~gla~D~~n~--------~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 459 CGNFVFIGYSKGTIDRFNMQSGIH--RKSFGDSPAHKGEVTGLAVDGTNR--------LLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cCceEEEeccCCeEEEEEcccCee--ecccccCccccCceeEEEecCCCc--------eEEEccCcceEEEEecCCccee
Confidence 899999999999999999999863 3344 58999999999998888 8999999999999999876421
Q ss_pred C----------------------------------CCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 438 L----------------------------------VSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 438 ~----------------------------------~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
. ...+..+.+.||+..|+++ +||||||.|+++|
T Consensus 529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~----~FS~DgrWlisas 595 (910)
T KOG1539|consen 529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDM----TFSPDGRWLISAS 595 (910)
T ss_pred eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeee----EeCCCCcEEEEee
Confidence 1 0123456788999999999 8999999999875
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.1e-25 Score=208.70 Aligned_cols=229 Identities=19% Similarity=0.302 Sum_probs=191.2
Q ss_pred CeeEEEecC-CCCEEEEEECCCcEEEEEcCC---cceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCC
Q 047728 222 AISSLSMSE-DQNLLYSASWDKTFKVWRTSD---YKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGK 295 (474)
Q Consensus 222 ~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~ 295 (474)
.+..+.|.. +.++|++++..|.|.+||+.. .+.+..+..|...++++.|++.. +|++|+.||+|++||++....
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 345677775 668999999999999999987 56777889999999999999887 999999999999999997664
Q ss_pred ceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEE--ecCCEEEEEeCCC
Q 047728 296 GTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLV--TAGNLVFSGSADM 372 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sgs~dg 372 (474)
..++......|+.+.|+| .+..++++...|.+.+||++........+..|.++++|+. |++.+||+|+.|+
T Consensus 169 ------~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK 242 (839)
T KOG0269|consen 169 ------KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK 242 (839)
T ss_pred ------cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc
Confidence 455666888999999999 7789999999999999999999888888899999998876 5789999999999
Q ss_pred cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEec--CCCcEEEEEccCCCCCCCCCcccccccCC
Q 047728 373 SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS--LDKSVKMWRVSEQAPPLVSTTQQHPLEGH 450 (474)
Q Consensus 373 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s--~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 450 (474)
.|+|||..+.+...+.++. -..+|.+|+|-|+... .|++++ .|-.|+|||++..- .+...+..|
T Consensus 243 ~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~-------hLAtcsmv~dtsV~VWDvrRPY------IP~~t~~eH 308 (839)
T KOG0269|consen 243 MVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSY-------HLATCSMVVDTSVHVWDVRRPY------IPYATFLEH 308 (839)
T ss_pred cEEEEeccCCCccceeEEe-ecceeeeeeeccCccc-------hhhhhhccccceEEEEeecccc------ccceeeecc
Confidence 9999999876644444443 3568999999999875 688876 57899999998763 455677889
Q ss_pred CCCCCccccCC-------CCCcCCcee
Q 047728 451 GVAPNSLPYAP-------SFSSQGRIC 470 (474)
Q Consensus 451 ~~~v~~l~~~p-------~~s~Dg~~l 470 (474)
...++.++|.- +.|-||.++
T Consensus 309 ~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 309 TDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred CccccceeccCCCceeeEeecCccHHH
Confidence 99999998875 346666554
No 127
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=8.6e-25 Score=185.65 Aligned_cols=287 Identities=17% Similarity=0.260 Sum_probs=209.4
Q ss_pred cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcce-eeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728 142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASI-HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218 (474)
Q Consensus 142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
..+..|.+++.+-+|+ |..++||+.|..|+|.|++..-... ..++.. +..+....-..++..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~---------------~~~qa~hPvIRTlYD 170 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMIS---------------GDTQARHPVIRTLYD 170 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhcc---------------CCcccCCceEeehhh
Confidence 3456799999999998 7799999999999999998432111 000000 000001111245677
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee--ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI--AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK 295 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~ 295 (474)
|.++|+++.|+|...+|++|+.|++|++||+......+.++ ....+|.++.|+|.| +|++|....++++||+++-+.
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc 250 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC 250 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeE
Confidence 99999999999999999999999999999997654333332 235689999999999 899999999999999986432
Q ss_pred ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE---EEecCCEEEEEeCCC
Q 047728 296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC---LVTAGNLVFSGSADM 372 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~---~~~~~~~l~sgs~dg 372 (474)
........+|.+.|+++.+++.+++.++++.||.|++||--.++++..+...|...-+| |..+++++++.+.|.
T Consensus 251 ---fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS 327 (430)
T KOG0640|consen 251 ---FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS 327 (430)
T ss_pred ---eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence 11223456789999999999999999999999999999998888888888888765543 455899999999999
Q ss_pred cEEEEECCCCceEEEEeecCC--cc---ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccc
Q 047728 373 SICIWRRKENEHICLSMLTGH--SG---PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPL 447 (474)
Q Consensus 373 ~i~iwd~~~~~~~~~~~~~~h--~~---~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~ 447 (474)
.+++|.+.+++.+ ....+- ++ --+...|+..... +|.---..+.+.-||-++..... .--
T Consensus 328 ~vkLWEi~t~R~l--~~YtGAg~tgrq~~rtqAvFNhtEdy-------Vl~pDEas~slcsWdaRtadr~~------l~s 392 (430)
T KOG0640|consen 328 TVKLWEISTGRML--KEYTGAGTTGRQKHRTQAVFNHTEDY-------VLFPDEASNSLCSWDARTADRVA------LLS 392 (430)
T ss_pred eeeeeeecCCceE--EEEecCCcccchhhhhhhhhcCccce-------EEccccccCceeeccccchhhhh------hcc
Confidence 9999999999844 444332 22 2234456665551 33333345789999998864321 123
Q ss_pred cCCCCCCCccccCC
Q 047728 448 EGHGVAPNSLPYAP 461 (474)
Q Consensus 448 ~~~~~~v~~l~~~p 461 (474)
.+|.+.+..+.-+|
T Consensus 393 lgHn~a~R~i~HSP 406 (430)
T KOG0640|consen 393 LGHNGAVRWIVHSP 406 (430)
T ss_pred cCCCCCceEEEeCC
Confidence 47888888886555
No 128
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.4e-24 Score=191.45 Aligned_cols=297 Identities=21% Similarity=0.289 Sum_probs=212.2
Q ss_pred EEEEcCCEEEEeeCCC---cEEEEeCCcccccc-ccCc----cCEEEEEec---------CCEEEEEeCCCeEEEEecCC
Q 047728 115 SLAAAGDLLYTGSDSK---NIRVWKNQREFSGF-KSNS----GLVKAIVIS---------NEKIFSGHQDGKIRVWKVSS 177 (474)
Q Consensus 115 ~~~~~~~~l~tgs~dg---~v~vwd~~~~~~~~-~~h~----~~V~~i~~~---------~~~l~s~~~dg~i~vwd~~~ 177 (474)
-+.|+.++|++|-.+. .+.+|=.++.-..+ ..|. ..-.|+.|. ++++|.|..|..|.|||++-
T Consensus 132 ~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI 211 (463)
T KOG0270|consen 132 QVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDI 211 (463)
T ss_pred eeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEecccc
Confidence 3567677777665432 23334222222222 2232 222455552 67999999999999999986
Q ss_pred CCccee-eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCCcEEEEEcCCccee
Q 047728 178 KDASIH-KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDKTFKVWRTSDYKCL 255 (474)
Q Consensus 178 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~ 255 (474)
...... ..++... .......+.+...-.+|++.|.+++|+.. .+.|++|+.|.+|++||+.++++.
T Consensus 212 ~d~v~P~~~LGs~~------------sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~ 279 (463)
T KOG0270|consen 212 VDAVLPCVTLGSKA------------SKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPK 279 (463)
T ss_pred ccccccceeechhh------------hhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcc
Confidence 543321 1111100 00000011112223469999999999884 568899999999999999999999
Q ss_pred eeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCc
Q 047728 256 ESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGL 332 (474)
Q Consensus 256 ~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~ 332 (474)
.++..|.+.|.++.|+|.. .|++|+.|++|.+.|.|.... ........+.|..++|.| ....++++..||+
T Consensus 280 ~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~------s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~ 353 (463)
T KOG0270|consen 280 SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN------SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGT 353 (463)
T ss_pred eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc------cCceEEeccceEEEEecCCCceeEEEecCCce
Confidence 9999999999999999987 899999999999999985332 223334467799999999 4567888899999
Q ss_pred EEEeecCcccccceeeeecceeeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccc
Q 047728 333 VNFWERELNLSHGGVLRGHKLAILCLVTA---GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL 409 (474)
Q Consensus 333 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 409 (474)
|+-+|+|........+..|...|.+++.+ ..++++++.|+.|++|++.......+....-.-+...|.++.|+-..
T Consensus 354 v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~- 432 (463)
T KOG0270|consen 354 VYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAF- 432 (463)
T ss_pred EEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcce-
Confidence 99999999877778889999999888775 57899999999999999976553222221112234677788888764
Q ss_pred cccceEEEEEecCCCcEEEEEccCCCC
Q 047728 410 SREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 410 ~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
+++.|+..+.++|||+.+..+
T Consensus 433 ------~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 433 ------TLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ------EEEecCccceEEEeecccChh
Confidence 789999999999999988643
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=187.82 Aligned_cols=247 Identities=25% Similarity=0.420 Sum_probs=196.1
Q ss_pred CCEEEEeeC-CCcEEEEeCCccccc--cccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccce
Q 047728 120 GDLLYTGSD-SKNIRVWKNQREFSG--FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKD 194 (474)
Q Consensus 120 ~~~l~tgs~-dg~v~vwd~~~~~~~--~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 194 (474)
+++++++.. ...|.+|...++... ...-.+.|.+++-+ |.+|+.|+..|.|++|.+.++..+.
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~------------ 117 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN------------ 117 (476)
T ss_pred hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHH------------
Confidence 456666654 446889987654332 33457789999887 5677777799999999999998753
Q ss_pred eeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC---------CcceeeeeeecCcce
Q 047728 195 FIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS---------DYKCLESVIAHDDAV 265 (474)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~---------~~~~~~~~~~~~~~v 265 (474)
++.+|...|+|+.|+.|+.+|++|+.||.|.+|++. +-+++..+..|.-+|
T Consensus 118 --------------------v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsI 177 (476)
T KOG0646|consen 118 --------------------VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSI 177 (476)
T ss_pred --------------------HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCccee
Confidence 345699999999999999999999999999999863 346778889999999
Q ss_pred eEEEecCCC---eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc
Q 047728 266 NSIVAGFDG---LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL 342 (474)
Q Consensus 266 ~~v~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~ 342 (474)
+++...+.+ ++++++.|.++++||+..+. ..........+.+++++|.+..+++|+++|.|.+.++....
T Consensus 178 TDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-------LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~ 250 (476)
T KOG0646|consen 178 TDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-------LLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLS 250 (476)
T ss_pred EEEEecCCCccceEEEecCCceEEEEEeccce-------eeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCC
Confidence 999988775 99999999999999998653 23334456789999999999999999999999987754321
Q ss_pred ---------------ccceeeeecce--eeEE--EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEe
Q 047728 343 ---------------SHGGVLRGHKL--AILC--LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE 403 (474)
Q Consensus 343 ---------------~~~~~~~~~~~--~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~ 403 (474)
.....+.+|.. .|.| ++.||.+|++|+.||.|+|||+.+.+ ++.++....++|+.+.+.
T Consensus 251 ~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q--~iRtl~~~kgpVtnL~i~ 328 (476)
T KOG0646|consen 251 GQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ--CIRTLQTSKGPVTNLQIN 328 (476)
T ss_pred cccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH--HHHHHhhhccccceeEee
Confidence 11233456766 5555 55689999999999999999999888 666776678899999996
Q ss_pred eCCc
Q 047728 404 KDDE 407 (474)
Q Consensus 404 ~~~~ 407 (474)
|-.+
T Consensus 329 ~~~~ 332 (476)
T KOG0646|consen 329 PLER 332 (476)
T ss_pred cccc
Confidence 6544
No 130
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4.2e-23 Score=189.81 Aligned_cols=309 Identities=17% Similarity=0.229 Sum_probs=228.6
Q ss_pred cceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEecC---CEEEEEeCCCeEE
Q 047728 99 PNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVISN---EKIFSGHQDGKIR 171 (474)
Q Consensus 99 ~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~~---~~l~s~~~dg~i~ 171 (474)
|..+-..+.+|++.|.|++.+ |.+|++|+.||+|+||. +++++..+. -.+.|.||+|++ ..+++.+.+..+.
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceE
Confidence 455666788999999998866 99999999999999998 445555554 345899999982 2444445554566
Q ss_pred EEecCCCCcceeeeecccCccceeeeee---cCCCCeEEEeeec--------cceeeeccCCeeEEEecCCCCEEEEEEC
Q 047728 172 VWKVSSKDASIHKRVGTLPTFKDFIKCS---MKPSNYIEVRRHR--------NGLWIKHFDAISSLSMSEDQNLLYSASW 240 (474)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------~~~~~~h~~~V~~l~~~~~~~~l~s~s~ 240 (474)
|-+-.-+..+..... .+.+... ..+...+..+... ..+...|...|+.+.|+..|.+|++...
T Consensus 468 ivnp~~G~~~e~~~t------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~ 541 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPT------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP 541 (733)
T ss_pred EeCccccchhhhcch------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence 665444422111000 0000000 1111111122111 2355679999999999999999998865
Q ss_pred C---CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEE
Q 047728 241 D---KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALA 316 (474)
Q Consensus 241 d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~ 316 (474)
+ ..|.|+++...+...-|....+.|.++.|+|.. +|++++ ...|+|||+..+. +...+......|..++
T Consensus 542 ~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqe------lvKkL~tg~kwiS~ms 614 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQE------LVKKLLTGSKWISSMS 614 (733)
T ss_pred CCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHH------HHHHHhcCCeeeeeee
Confidence 3 569999998877776776678889999999998 555554 5789999987533 3455566677899999
Q ss_pred EcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecC--CEEEEEeCCCcEEEEEC-------CCCceEEE
Q 047728 317 ISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAG--NLVFSGSADMSICIWRR-------KENEHICL 387 (474)
Q Consensus 317 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sgs~dg~i~iwd~-------~~~~~~~~ 387 (474)
++|.|..|++++.|+.+..||++......+.+.-|...+..+.+.. .++++|+.||++.||-- .+...+.+
T Consensus 615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPl 694 (733)
T KOG0650|consen 615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPL 694 (733)
T ss_pred ecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEee
Confidence 9999999999999999999999988878888888998887777664 58999999999999853 23335567
Q ss_pred EeecCCccc----eEEEEEeeCCccccccceEEEEEecCCCcEEEE
Q 047728 388 SMLTGHSGP----VKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429 (474)
Q Consensus 388 ~~~~~h~~~----v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw 429 (474)
..+.+|... |..+.|+|... +|++++.||+|++|
T Consensus 695 K~L~gH~~~~~~gVLd~~wHP~qp--------WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 695 KRLRGHEKTNDLGVLDTIWHPRQP--------WLFSAGADGTIRLF 732 (733)
T ss_pred eeccCceeecccceEeecccCCCc--------eEEecCCCceEEee
Confidence 888899766 99999999998 89999999999998
No 131
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.2e-23 Score=176.10 Aligned_cols=259 Identities=16% Similarity=0.276 Sum_probs=189.6
Q ss_pred eeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc------cccccccCccCEEEEEec----CCEEEEEeCCCeEEEEe
Q 047728 107 VREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR------EFSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIRVWK 174 (474)
Q Consensus 107 ~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~------~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~vwd 174 (474)
.+|.+-|.++.|+ |+.+|||+.|++|+|||..+ .-...+.|.+.|..|.|. |+.+++++.|++++||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 3688889998888 99999999999999999543 345578899999999996 88999999999999998
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC--CCCEEEEEECCCcEEEEEcCCc
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE--DQNLLYSASWDKTFKVWRTSDY 252 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~ 252 (474)
-......... ..-.+...+......|+++.|.| -|-.|++++.||.|+||+.-..
T Consensus 90 E~~~~~~~~~-----------------------~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 90 EQEKSEEAHG-----------------------RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred eccccccccc-----------------------ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 6422211100 00011134455778999999999 5678999999999999986432
Q ss_pred ------ceeeeee-------ecCcceeEEEecCCC----eEEEeeCC-----CcEEEEEcccCCCceeeeeeeeeecccc
Q 047728 253 ------KCLESVI-------AHDDAVNSIVAGFDG----LVFTGSAD-----GTVKVWRRELQGKGTKHFFSQTLLKQEC 310 (474)
Q Consensus 253 ------~~~~~~~-------~~~~~v~~v~~~~~~----~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 310 (474)
.+...+. .+..+..|+.|++.. +|++|+.+ +.++||...... .+......+.++..
T Consensus 147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~--rKw~kva~L~d~~d 224 (361)
T KOG2445|consen 147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG--RKWLKVAELPDHTD 224 (361)
T ss_pred cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc--ceeeeehhcCCCCC
Confidence 2222222 456778899999765 56666655 489999876443 24445667779999
Q ss_pred cEEEEEEcCC----CCEEEEEcCCCcEEEeecCccc-------------------ccceeeeecceeeEEEEec--CCEE
Q 047728 311 AVTALAISPD----AAIVYCGSSDGLVNFWERELNL-------------------SHGGVLRGHKLAILCLVTA--GNLV 365 (474)
Q Consensus 311 ~v~~l~~~~~----~~~l~~~~~dg~i~v~d~~~~~-------------------~~~~~~~~~~~~v~~~~~~--~~~l 365 (474)
+|+.++|.|+ -.+|++++.|| |+||.+.... .....+.+|...+..+.++ |..|
T Consensus 225 pI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiL 303 (361)
T KOG2445|consen 225 PIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTIL 303 (361)
T ss_pred cceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEE
Confidence 9999999994 35899999999 9999976321 1122345788888766664 9999
Q ss_pred EEEeCCCcEEEEECCC-CceEEEEeec
Q 047728 366 FSGSADMSICIWRRKE-NEHICLSMLT 391 (474)
Q Consensus 366 ~sgs~dg~i~iwd~~~-~~~~~~~~~~ 391 (474)
.+.+.||.|++|...- ....|...+.
T Consensus 304 sStGdDG~VRLWkany~n~~kC~sv~~ 330 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKANYNNLWKCTSVLK 330 (361)
T ss_pred eecCCCceeeehhhhhhhhheeeeEEe
Confidence 9999999999997653 2333444444
No 132
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-22 Score=164.24 Aligned_cols=246 Identities=22% Similarity=0.262 Sum_probs=194.7
Q ss_pred CCCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc-------cccccccCccCEEEEEec-----C-CE
Q 047728 96 GFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR-------EFSGFKSNSGLVKAIVIS-----N-EK 160 (474)
Q Consensus 96 ~~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~-------~~~~~~~h~~~V~~i~~~-----~-~~ 160 (474)
..+|..+.+.-+.|++.|+|.+++ |++|+||+.|++|++...+. .-..+..|.+.|..++|- + ..
T Consensus 75 ~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~i 154 (350)
T KOG0641|consen 75 KQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAI 154 (350)
T ss_pred cCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceE
Confidence 456788888999999999998887 99999999999999985332 234567799999999995 2 34
Q ss_pred EEEEe-CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE
Q 047728 161 IFSGH-QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS 239 (474)
Q Consensus 161 l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 239 (474)
|++++ .|..|.+-|-..++.. ..+.+|++-|.++- +-++-.+++|+
T Consensus 155 l~s~gagdc~iy~tdc~~g~~~--------------------------------~a~sghtghilaly-swn~~m~~sgs 201 (350)
T KOG0641|consen 155 LASAGAGDCKIYITDCGRGQGF--------------------------------HALSGHTGHILALY-SWNGAMFASGS 201 (350)
T ss_pred EEecCCCcceEEEeecCCCCcc--------------------------------eeecCCcccEEEEE-EecCcEEEccC
Confidence 55544 4555666565555432 23456999888873 44688999999
Q ss_pred CCCcEEEEEcCCcceeeeeee--c-----CcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc
Q 047728 240 WDKTFKVWRTSDYKCLESVIA--H-----DDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA 311 (474)
Q Consensus 240 ~dg~i~iwd~~~~~~~~~~~~--~-----~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 311 (474)
.|.+|++||++-..++.++.. | ...|.++++.|.| +|++|-.|....+||++.+. ..+.+..|...
T Consensus 202 qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r------~iq~f~phsad 275 (350)
T KOG0641|consen 202 QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR------MIQRFHPHSAD 275 (350)
T ss_pred CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc------eeeeeCCCccc
Confidence 999999999998888887743 2 3579999999999 89999999999999999655 47888999999
Q ss_pred EEEEEEcCCCCEEEEEcCCCcEEEeecCcc---cccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECC
Q 047728 312 VTALAISPDAAIVYCGSSDGLVNFWERELN---LSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 312 v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~ 380 (474)
|.|+.|+|...++++++.|..|++-|++.. +....+...|+..++.+ .+..--+++.+.|.++.+|-+.
T Consensus 276 ir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 276 IRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999999999999999999999998754 22334455677666544 4556678899999999999754
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=6.2e-22 Score=184.06 Aligned_cols=280 Identities=13% Similarity=0.123 Sum_probs=191.7
Q ss_pred CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEE-EEEeCCCeEEEEecCCCCcceeeeecccCccce
Q 047728 120 GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKI-FSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKD 194 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 194 (474)
++++++++.|+.|++||.. +.+..+..+. .+.+++|+ ++.+ ++++.++.|++||..+++......
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------- 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--------- 70 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---------
Confidence 4678999999999999953 4555555544 36678887 4455 567789999999998765432110
Q ss_pred eeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCC
Q 047728 195 FIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD 273 (474)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~ 273 (474)
.+ ..+..++|+|+++.++++ ..++.|++||+.+.+.+..+.. ...+.+++++|+
T Consensus 71 -----------------------~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~d 125 (300)
T TIGR03866 71 -----------------------SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPD 125 (300)
T ss_pred -----------------------CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCC
Confidence 12 224578899999877655 5689999999998887776653 344688999999
Q ss_pred C-eEEEeeCCC-cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccccceeeee
Q 047728 274 G-LVFTGSADG-TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLSHGGVLRG 350 (474)
Q Consensus 274 ~-~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~ 350 (474)
+ .++++..++ .+.+||.+.... .... .....+..++|+|+++.|+++ ..++.|++||+++......+...
T Consensus 126 g~~l~~~~~~~~~~~~~d~~~~~~------~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~ 198 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTKTYEI------VDNV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE 198 (300)
T ss_pred CCEEEEEecCCCeEEEEeCCCCeE------EEEE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence 9 777776665 467778764321 1111 122345789999999988655 46899999999877544322110
Q ss_pred ----c----ceeeEEEEecCCEEEE-EeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEe-
Q 047728 351 ----H----KLAILCLVTAGNLVFS-GSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSG- 420 (474)
Q Consensus 351 ----~----~~~v~~~~~~~~~l~s-gs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~- 420 (474)
+ ...-++++++++++++ ...++.|.+||+++++.. ..+ .+...+.+++|+|+++ +|+++
T Consensus 199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~--~~~-~~~~~~~~~~~~~~g~--------~l~~~~ 267 (300)
T TIGR03866 199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL--DYL-LVGQRVWQLAFTPDEK--------YLLTTN 267 (300)
T ss_pred ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE--EEE-EeCCCcceEEECCCCC--------EEEEEc
Confidence 1 1122567888988655 455678999999887633 222 2345799999999998 77765
Q ss_pred cCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccC
Q 047728 421 SLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYA 460 (474)
Q Consensus 421 s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 460 (474)
+.++.|++||+.+++ ....+.. ...+++++++
T Consensus 268 ~~~~~i~v~d~~~~~-------~~~~~~~-~~~~~~~~~~ 299 (300)
T TIGR03866 268 GVSNDVSVIDVAALK-------VIKSIKV-GRLPWGVVVR 299 (300)
T ss_pred CCCCeEEEEECCCCc-------EEEEEEc-ccccceeEeC
Confidence 579999999999873 3334432 3455777544
No 134
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=1.4e-22 Score=180.86 Aligned_cols=290 Identities=16% Similarity=0.185 Sum_probs=216.3
Q ss_pred eeeeeeeeecCcEEEEEEc---C-CEEEEeeCCCcEEEEeCC------ccccccccCccCEEEEEec---CCEEEEEeCC
Q 047728 101 VLIGSLVREEGHIYSLAAA---G-DLLYTGSDSKNIRVWKNQ------REFSGFKSNSGLVKAIVIS---NEKIFSGHQD 167 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~---~-~~l~tgs~dg~v~vwd~~------~~~~~~~~h~~~V~~i~~~---~~~l~s~~~d 167 (474)
.......-+.+.|++++|. . +++|+|..-|.|-+||.+ ..+..+..|.++|.+|.|+ ...+++.+.|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 3344566788999999987 3 689999999999999973 3456678899999999998 4589999999
Q ss_pred CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEE
Q 047728 168 GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW 247 (474)
Q Consensus 168 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw 247 (474)
|+|++-|++........... .....+.++.|+.+...++.+..=|.+.+|
T Consensus 257 GtiR~~D~~~~i~e~v~s~~------------------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~i 306 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLD------------------------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVI 306 (498)
T ss_pred ceeeeeeecchhhHHHhhcC------------------------------ccceeeeeccccCCCccEEEeecccceEEE
Confidence 99999999887543211110 133456678888877778888777899999
Q ss_pred EcCCcce-eeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEE
Q 047728 248 RTSDYKC-LESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIV 324 (474)
Q Consensus 248 d~~~~~~-~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 324 (474)
|+++... ...+..|+..|..++++|-. ++++++.|++++|||++....... +......|...|.+..|+|.+-.|
T Consensus 307 D~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 307 DLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTL 384 (498)
T ss_pred EeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCce
Confidence 9997655 67778899999999999988 899999999999999986544322 245667899999999999988779
Q ss_pred EEEcCCCcEEEeecC---cc-cccceeeeecce--e----eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC-
Q 047728 325 YCGSSDGLVNFWERE---LN-LSHGGVLRGHKL--A----ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH- 393 (474)
Q Consensus 325 ~~~~~dg~i~v~d~~---~~-~~~~~~~~~~~~--~----v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h- 393 (474)
++.+.|..|+|||.. .. .....+...+.. . -..|.|+..++++|-.-..|-|+|-..++.+ ..+..-
T Consensus 385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v--~el~~P~ 462 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMV--CELHDPE 462 (498)
T ss_pred EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEe--eeccCcc
Confidence 999999999999984 22 222222222211 1 1456788999999999999999999888743 333222
Q ss_pred ccceEE-EEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728 394 SGPVKC-LAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431 (474)
Q Consensus 394 ~~~v~~-l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~ 431 (474)
...|.+ ..|+|-+.. +++.++..|.|.||--
T Consensus 463 ~~tI~~vn~~HP~~~~-------~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 463 SSTIPSVNEFHPMRDT-------LAAGGNSSGKIYVFTN 494 (498)
T ss_pred ccccccceeecccccc-------eeccCCccceEEEEec
Confidence 224444 478888762 3444456677887754
No 135
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.4e-25 Score=208.70 Aligned_cols=227 Identities=23% Similarity=0.389 Sum_probs=194.5
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCce
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 297 (474)
|...|.++..-...+.+++|++|..+-+|.+.....+..+.+|..+|.++.|+... +|++|+.+|+|++||++...
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk--- 103 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK--- 103 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh---
Confidence 88899999987788999999999999999999888888999999999999999988 89999999999999998554
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeeccee--eEEEEecCCEEEEEeCCCcEE
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLA--ILCLVTAGNLVFSGSADMSIC 375 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~l~sgs~dg~i~ 375 (474)
....+.+|...+.++.|+|-+.+.+.|+.|..+++||.+...+. ..+.+|... ++.|+|+|++++.|++|.+++
T Consensus 104 ---~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~-~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 104 ---IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS-HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK 179 (825)
T ss_pred ---hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCce-eeecCCcceeEEEeecCCCceeeccCCcceee
Confidence 35688899999999999999999999999999999999965554 445556644 467889999999999999999
Q ss_pred EEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCC
Q 047728 376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPN 455 (474)
Q Consensus 376 iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~ 455 (474)
|||...++ .+..+..|.+.+..+.|+|..- ++++|+.|++|++||+++-+ ...........|.
T Consensus 180 i~d~~agk--~~~ef~~~e~~v~sle~hp~e~--------Lla~Gs~d~tv~f~dletfe-------~I~s~~~~~~~v~ 242 (825)
T KOG0267|consen 180 IWDLTAGK--LSKEFKSHEGKVQSLEFHPLEV--------LLAPGSSDRTVRFWDLETFE-------VISSGKPETDGVR 242 (825)
T ss_pred eecccccc--cccccccccccccccccCchhh--------hhccCCCCceeeeeccceeE-------EeeccCCccCCce
Confidence 99999888 5678899999999999999987 89999999999999998652 2222333355677
Q ss_pred ccccCCCCCcCCceeecc
Q 047728 456 SLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 456 ~l~~~p~~s~Dg~~l~~~ 473 (474)
++ +|.|||+.+.++
T Consensus 243 ~~----~fn~~~~~~~~G 256 (825)
T KOG0267|consen 243 SL----AFNPDGKIVLSG 256 (825)
T ss_pred ee----eecCCceeeecC
Confidence 77 788888877654
No 136
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=3.3e-23 Score=180.52 Aligned_cols=263 Identities=17% Similarity=0.297 Sum_probs=196.1
Q ss_pred eeeeeeeecCcEEEEEEc--C--CEEEEeeCCCcEEEEeCC------------------ccccccccCccCEEEEEecC-
Q 047728 102 LIGSLVREEGHIYSLAAA--G--DLLYTGSDSKNIRVWKNQ------------------REFSGFKSNSGLVKAIVISN- 158 (474)
Q Consensus 102 ~~~~l~~h~~~i~~~~~~--~--~~l~tgs~dg~v~vwd~~------------------~~~~~~~~h~~~V~~i~~~~- 158 (474)
+-.....|.+.|+.+... + .+.++=++.|.|.||++. +++.++.+|.+.=.+++|++
T Consensus 143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc
Confidence 334456788888887755 3 377778889999999843 34667788998899999984
Q ss_pred --CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEE
Q 047728 159 --EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLL 235 (474)
Q Consensus 159 --~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l 235 (474)
..|++|..-+.|++|...++...... .-+.+|+..|..|+|+| ....|
T Consensus 223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~-----------------------------~Pf~gH~~SVEDLqWSptE~~vf 273 (440)
T KOG0302|consen 223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQ-----------------------------RPFTGHTKSVEDLQWSPTEDGVF 273 (440)
T ss_pred cccccccCccccceEeeeeccCceeecC-----------------------------ccccccccchhhhccCCccCceE
Confidence 57999998899999999886543211 23456999999999999 45789
Q ss_pred EEEECCCcEEEEEcCCc---ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc
Q 047728 236 YSASWDKTFKVWRTSDY---KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA 311 (474)
Q Consensus 236 ~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 311 (474)
++|+.||+|+|||++.+ .++.+ ++|...|+.|.|+..- +|++|+.||+++|||++..+.. .+...+..|..+
T Consensus 274 aScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~---~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 274 ASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG---QPVATFKYHKAP 349 (440)
T ss_pred EeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC---CcceeEEeccCC
Confidence 99999999999999987 34443 8899999999999877 8999999999999999976554 356788999999
Q ss_pred EEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee
Q 047728 312 VTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML 390 (474)
Q Consensus 312 v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 390 (474)
|+++.|+| +...|++++.|.+|.+||+............ +. .+ +-|+. +.+++..
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~---------------a~---~~---L~dlP---pQLLFVH 405 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQE---------------AA---EG---LQDLP---PQLLFVH 405 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccc---------------cc---cc---hhcCC---ceeEEEe
Confidence 99999999 5678889999999999998654332111000 00 00 11221 1122222
Q ss_pred cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728 391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 391 ~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
. -...|..+.|+++-.. +|++.+.|| +.||.
T Consensus 406 q-GQke~KevhWH~QiPG-------~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 406 Q-GQKEVKEVHWHRQIPG-------LLVSTAIDG-FNVFK 436 (440)
T ss_pred c-chhHhhhheeccCCCC-------eEEEecccc-eeEEE
Confidence 2 2346888999988765 788888888 55554
No 137
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=7.4e-23 Score=184.23 Aligned_cols=282 Identities=15% Similarity=0.170 Sum_probs=209.3
Q ss_pred CCcEEEEeCCc--cccccccC--ccCEEEEEec-CCEEEEE--eCCCeEEEEecCCCCcceeeeecccCccceeeeeecC
Q 047728 129 SKNIRVWKNQR--EFSGFKSN--SGLVKAIVIS-NEKIFSG--HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMK 201 (474)
Q Consensus 129 dg~v~vwd~~~--~~~~~~~h--~~~V~~i~~~-~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (474)
...+++||... ....+..| ...+..+.|. .+.|+++ +.|..+++|.-....... .....+
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~V-p~~~k~------------ 77 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEV-PRVRKL------------ 77 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCcc-ceeecc------------
Confidence 33599999442 12222222 2238899998 4445554 567789999766542111 111100
Q ss_pred CCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee
Q 047728 202 PSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS 280 (474)
Q Consensus 202 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~ 280 (474)
..+.-.|++......++++|+..+.|+|||++...+.+.++.|...|+++.+.... +|++++
T Consensus 78 -----------------~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs 140 (673)
T KOG4378|consen 78 -----------------TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS 140 (673)
T ss_pred -----------------ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec
Confidence 11233455555555899999999999999999888888999999999999998776 999999
Q ss_pred CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCcccccceeeeecceee--EE
Q 047728 281 ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LC 357 (474)
Q Consensus 281 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~ 357 (474)
..|.|.|..+.+..+.. .........|+-+.|+|..+ +|.+++.+|.|.+||.............|..+. +|
T Consensus 141 ~gGdiiih~~~t~~~tt-----~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gic 215 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKTT-----TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGIC 215 (673)
T ss_pred cCCcEEEEecccCcccc-----ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcce
Confidence 99999999987665411 11223345677899999665 566789999999999998888877888888776 77
Q ss_pred EEec-CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 358 LVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 358 ~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
|+|. ..+|++.+.|..|.+||...... ...+. ...|...++|.++|. +|+.|...|.|..||++..+
T Consensus 216 fspsne~l~vsVG~Dkki~~yD~~s~~s--~~~l~-y~~Plstvaf~~~G~--------~L~aG~s~G~~i~YD~R~~k- 283 (673)
T KOG4378|consen 216 FSPSNEALLVSVGYDKKINIYDIRSQAS--TDRLT-YSHPLSTVAFSECGT--------YLCAGNSKGELIAYDMRSTK- 283 (673)
T ss_pred ecCCccceEEEecccceEEEeecccccc--cceee-ecCCcceeeecCCce--------EEEeecCCceEEEEecccCC-
Confidence 7774 67889999999999999986652 22332 456899999999999 99999999999999998764
Q ss_pred CCCCCcccccccCCCCCCCccccCCC
Q 047728 437 PLVSTTQQHPLEGHGVAPNSLPYAPS 462 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~v~~l~~~p~ 462 (474)
.+...+..|...|++++|.|+
T Consensus 284 -----~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 284 -----APVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred -----CCceEeeecccceeEEEeeec
Confidence 345567789999999988775
No 138
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.6e-24 Score=201.86 Aligned_cols=250 Identities=25% Similarity=0.404 Sum_probs=208.2
Q ss_pred EEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeee
Q 047728 122 LLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCS 199 (474)
Q Consensus 122 ~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (474)
++.....+-.+++||.++ +..|...|.++..- .+.+++|+.|..+-+|.+.......
T Consensus 6 ~~m~~~~~t~Lr~~~~~~----~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~----------------- 64 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE----FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT----------------- 64 (825)
T ss_pred ccceeeeeeccccccchh----hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-----------------
Confidence 344444555677888654 45688888888754 6789999999999999987765442
Q ss_pred cCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEE
Q 047728 200 MKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFT 278 (474)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~ 278 (474)
.|.+|..+|.++.|+++..+|++|+.+|+|++||++..+.++++.+|...+..+.|+|-+ +++.
T Consensus 65 ---------------S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~ 129 (825)
T KOG0267|consen 65 ---------------SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFAS 129 (825)
T ss_pred ---------------eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecc
Confidence 245699999999999999999999999999999999999999999999999999999999 7889
Q ss_pred eeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE
Q 047728 279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL 358 (474)
Q Consensus 279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~ 358 (474)
|+.|+.+++||.+..+ +.....+|...|..+.|+|+|++++.+++|..+++||+..+... ..+..|...+..+
T Consensus 130 gStdtd~~iwD~Rk~G------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~-~ef~~~e~~v~sl 202 (825)
T KOG0267|consen 130 GSTDTDLKIWDIRKKG------CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS-KEFKSHEGKVQSL 202 (825)
T ss_pred ccccccceehhhhccC------ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc-ccccccccccccc
Confidence 9999999999998655 36677779999999999999999999999999999999877654 4556677766554
Q ss_pred --EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC
Q 047728 359 --VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424 (474)
Q Consensus 359 --~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg 424 (474)
.+..-++++|+.|+++++||+++.+ .+.........|.+++|+|++. .+++|..+.
T Consensus 203 e~hp~e~Lla~Gs~d~tv~f~dletfe--~I~s~~~~~~~v~~~~fn~~~~--------~~~~G~q~s 260 (825)
T KOG0267|consen 203 EFHPLEVLLAPGSSDRTVRFWDLETFE--VISSGKPETDGVRSLAFNPDGK--------IVLSGEQIS 260 (825)
T ss_pred ccCchhhhhccCCCCceeeeeccceeE--EeeccCCccCCceeeeecCCce--------eeecCchhh
Confidence 4557789999999999999999776 4566666788999999999998 677765543
No 139
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=172.70 Aligned_cols=248 Identities=16% Similarity=0.232 Sum_probs=176.6
Q ss_pred cceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee--e--eeecCcceeEEEecCCC--eEEEeeCCCcEE
Q 047728 213 NGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE--S--VIAHDDAVNSIVAGFDG--LVFTGSADGTVK 286 (474)
Q Consensus 213 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~--~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~ 286 (474)
...+.+|.+.|++++|+.||+.|++++.|++|++|++++..... . ....-+-.+.+.|.||. .++..-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 35678899999999999999999999999999999998743211 1 11122356889999998 666777778899
Q ss_pred EEEcccCCCceeeee------eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-cceeeEEEE
Q 047728 287 VWRRELQGKGTKHFF------SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-HKLAILCLV 359 (474)
Q Consensus 287 iwd~~~~~~~~~~~~------~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~~ 359 (474)
+|.+.....+..... ......|.-.+..+-...++.+|++++.|..|.+|+++ ++.+..+-.. ....-.+++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 998765433221111 11223456667777778889999999999999999998 4444333222 234457899
Q ss_pred ecCCEEEEEeCCCcEEEEECC---CCc---eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 360 TAGNLVFSGSADMSICIWRRK---ENE---HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 360 ~~~~~l~sgs~dg~i~iwd~~---~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
|+|+++++++---.|++|.+- .+. ...+..+.+|...|..++|+++.. .++|.+.||+++|||+.-
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~--------r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST--------RAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc--------eeEEEecCCcEEEeeccc
Confidence 999999999998899999873 221 223567899999999999999998 899999999999999763
Q ss_pred ----CCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728 434 ----QAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 434 ----~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
++.+.....-..++..-......| +.||.|++++-+
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL----~lsP~g~~lA~s 349 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRL----ELSPSGDSLAVS 349 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEE----EeCCCCcEEEee
Confidence 233322222222333333334445 667778877643
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8.1e-22 Score=176.20 Aligned_cols=277 Identities=14% Similarity=0.217 Sum_probs=209.9
Q ss_pred cCcEEEEEEc--CCEEEEeeCCCcEEEEeCC----ccccccccCccCEEEEEec--CC-EEEEEeCCCeEEEEecCCCCc
Q 047728 110 EGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ----REFSGFKSNSGLVKAIVIS--NE-KIFSGHQDGKIRVWKVSSKDA 180 (474)
Q Consensus 110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~--~~-~l~s~~~dg~i~vwd~~~~~~ 180 (474)
.+.|+++.|. ..+|++|+.||+++||.+. ..++.+.-...+|.+..|. |. .+++++....+..||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4679998887 5699999999999999743 4455555567788888887 55 899999999999999998876
Q ss_pred ceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee
Q 047728 181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA 260 (474)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 260 (474)
....+.... ....+....+++++++|+..+..|.|.+....+++.+.+++-
T Consensus 293 ~k~~~~~g~-----------------------------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki 343 (514)
T KOG2055|consen 293 TKLKPPYGV-----------------------------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI 343 (514)
T ss_pred ccccCCCCc-----------------------------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee
Confidence 543332221 234566788899999999999999999999999999999875
Q ss_pred cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeee-cccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728 261 HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLL-KQECAVTALAISPDAAIVYCGSSDGLVNFWER 338 (474)
Q Consensus 261 ~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~ 338 (474)
.+.|..++|+.++ .|++.+.+|.|.+||++.... ...+. ...-.-++++.++++.+||+|+..|.|.|||.
T Consensus 344 -eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~------~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 344 -EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC------LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred -ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce------EEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 7789999999999 888889999999999986532 22222 22223467888899999999999999999996
Q ss_pred Ccccc-----cceeeeec--ceeeEEEEecCCEEEEEe--CCCcEEEEECCCCceEEEEeec---CCccceEEEEEeeCC
Q 047728 339 ELNLS-----HGGVLRGH--KLAILCLVTAGNLVFSGS--ADMSICIWRRKENEHICLSMLT---GHSGPVKCLAVEKDD 406 (474)
Q Consensus 339 ~~~~~-----~~~~~~~~--~~~v~~~~~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~~---~h~~~v~~l~~~~~~ 406 (474)
++... +...+..- ....+.|+++.++|+.++ .+..+++-.+.+... ...+. .--+.|+|++|+|.+
T Consensus 417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV--FsNfP~~n~~vg~vtc~aFSP~s 494 (514)
T KOG2055|consen 417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV--FSNFPTSNTKVGHVTCMAFSPNS 494 (514)
T ss_pred chhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee--eccCCCCCCcccceEEEEecCCC
Confidence 54321 11122222 233356667889988887 467888887765431 12222 233569999999999
Q ss_pred ccccccceEEEEEecCCCcEEEEEcc
Q 047728 407 ESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 407 ~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
. +||.|..+|.|.+|.+.
T Consensus 495 G--------~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 495 G--------YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred c--------eEEeecCCCceeeEeec
Confidence 8 99999999999999984
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.8e-21 Score=181.73 Aligned_cols=266 Identities=17% Similarity=0.257 Sum_probs=207.4
Q ss_pred ccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728 148 SGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS 225 (474)
Q Consensus 148 ~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 225 (474)
...|.+++++ .+.||.+-.||.|.+|++...-....... .+....|.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~------------------------------g~~drsIE~ 74 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIH------------------------------GPEDRSIES 74 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEe------------------------------cCCCCceee
Confidence 5679999998 56899999999999999987543221111 124567999
Q ss_pred EEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeee
Q 047728 226 LSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQT 304 (474)
Q Consensus 226 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 304 (474)
++|.+ +..|++.+.+|.|.-||+.+++....+....+.|++++.+|.+ .++.|+.||.+..++...+ .......
T Consensus 75 L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~----~I~~~r~ 149 (691)
T KOG2048|consen 75 LAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD----KITYKRS 149 (691)
T ss_pred EEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc----eEEEEee
Confidence 99994 5678888999999999999999999999999999999999998 8999999997777765532 2233455
Q ss_pred eecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccccee----eeecc-eeeEEEE--e-cCCEEEEEeCCCcEEE
Q 047728 305 LLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV----LRGHK-LAILCLV--T-AGNLVFSGSADMSICI 376 (474)
Q Consensus 305 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~----~~~~~-~~v~~~~--~-~~~~l~sgs~dg~i~i 376 (474)
+....+.|.+++|+|++..|+.|+.||.|++||...+...... ....+ ..++.++ + ....|++|..-|+|.+
T Consensus 150 l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~F 229 (691)
T KOG2048|consen 150 LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTF 229 (691)
T ss_pred cccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEE
Confidence 6667899999999999999999999999999999887655311 11111 2333332 2 4778999999999999
Q ss_pred EECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCc
Q 047728 377 WRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNS 456 (474)
Q Consensus 377 wd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~ 456 (474)
||...+. .+..+..|.+.|.+++..+++. .+++++.|+.|..+......... ........|...|.+
T Consensus 230 Wd~~~gT--LiqS~~~h~adVl~Lav~~~~d--------~vfsaGvd~~ii~~~~~~~~~~w---v~~~~r~~h~hdvrs 296 (691)
T KOG2048|consen 230 WDSIFGT--LIQSHSCHDADVLALAVADNED--------RVFSAGVDPKIIQYSLTTNKSEW---VINSRRDLHAHDVRS 296 (691)
T ss_pred EcccCcc--hhhhhhhhhcceeEEEEcCCCC--------eEEEccCCCceEEEEecCCccce---eeeccccCCccccee
Confidence 9999887 5678888999999999999988 89999999999999988765532 233344567777877
Q ss_pred cccCC
Q 047728 457 LPYAP 461 (474)
Q Consensus 457 l~~~p 461 (474)
++.-+
T Consensus 297 ~av~~ 301 (691)
T KOG2048|consen 297 MAVIE 301 (691)
T ss_pred eeeec
Confidence 75544
No 142
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.3e-22 Score=180.43 Aligned_cols=227 Identities=18% Similarity=0.286 Sum_probs=177.1
Q ss_pred CCEEEEeeCCCcEEEEeCC--c---c------------------ccccccCccCEEEEEec---CCEEEEEeCCCeEEEE
Q 047728 120 GDLLYTGSDSKNIRVWKNQ--R---E------------------FSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVW 173 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~--~---~------------------~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vw 173 (474)
|+|+|.|+.|..|.|||+. . + -....+|+.+|.++.|+ .+.|++|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 7799999999999999843 0 0 01123699999999998 5689999999999999
Q ss_pred ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCc
Q 047728 174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDY 252 (474)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~ 252 (474)
|++++++.... ..|.+.|.++.|+| ....|++|+.|++|.+.|.+..
T Consensus 272 D~~~g~p~~s~--------------------------------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 272 DVDTGKPKSSI--------------------------------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred EcCCCCcceeh--------------------------------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 99999875432 23999999999999 6688999999999999999864
Q ss_pred ceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC-CCEEEEEcC
Q 047728 253 KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD-AAIVYCGSS 329 (474)
Q Consensus 253 ~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~ 329 (474)
......-...+.|-.++|.+.. .++++..||+|+-+|+|..++ +.-.+..|..+|.+|++++. ..++++++.
T Consensus 320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~-----~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~ 394 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK-----PVWTLKAHDDEISGLSVNIQTPGLLSTAST 394 (463)
T ss_pred cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC-----ceeEEEeccCCcceEEecCCCCcceeeccc
Confidence 4333333346789999999987 888999999999999998765 67788899999999999984 567889999
Q ss_pred CCcEEEeecCcccccceeeeecc-eeeEEEEec---CCEEEEEeCCCcEEEEECCCCc
Q 047728 330 DGLVNFWERELNLSHGGVLRGHK-LAILCLVTA---GNLVFSGSADMSICIWRRKENE 383 (474)
Q Consensus 330 dg~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~~---~~~l~sgs~dg~i~iwd~~~~~ 383 (474)
|+.|++|++..........+... ....|+.++ .-.++.|+..+.++|||+.+..
T Consensus 395 d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 395 DKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred cceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 99999999865433211111111 113444443 4578888888899999998765
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=4.5e-22 Score=168.10 Aligned_cols=218 Identities=24% Similarity=0.317 Sum_probs=165.6
Q ss_pred ccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728 143 GFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH 219 (474)
Q Consensus 143 ~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 219 (474)
....|.+.|+++.++ ++++++|+.||.|.+||++.......... +. ....+.-+.+ -.+|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l---------i~----k~~c~v~~~h----~~~H 100 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL---------IA----KHKCIVAKQH----ENGH 100 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc---------ee----heeeeccccC----Cccc
Confidence 345688999999997 88999999999999999987542110000 00 0000001111 1348
Q ss_pred cCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC----eEEEeeCCCcEEEEEcccCC
Q 047728 220 FDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG----LVFTGSADGTVKVWRRELQG 294 (474)
Q Consensus 220 ~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~----~l~~~~~dg~i~iwd~~~~~ 294 (474)
.-.|.++.|-| |...+.+++.|.++++||..+.+....++- ++.|+.-+++|-. ++++|..|-.|++.|+..+.
T Consensus 101 ky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 101 KYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred eeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 88999999999 778999999999999999999888877754 6778887877753 78889999999999998765
Q ss_pred CceeeeeeeeeecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCccccccee--------------eeecceee--EE
Q 047728 295 KGTKHFFSQTLLKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHGGV--------------LRGHKLAI--LC 357 (474)
Q Consensus 295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~--------------~~~~~~~v--~~ 357 (474)
+...+.+|...|.++.|+|... .|++|+.||.|++||++...-.... ...|...+ +|
T Consensus 180 ------~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla 253 (397)
T KOG4283|consen 180 ------FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA 253 (397)
T ss_pred ------ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence 4788999999999999999665 6788999999999998754211111 22344444 56
Q ss_pred EEecCCEEEEEeCCCcEEEEECCCCce
Q 047728 358 LVTAGNLVFSGSADMSICIWRRKENEH 384 (474)
Q Consensus 358 ~~~~~~~l~sgs~dg~i~iwd~~~~~~ 384 (474)
+..++.++++++.|..+++|+..+++.
T Consensus 254 ~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 254 WTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ecccchhhhhccCccceEEeecccCcc
Confidence 667899999999999999999987753
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.9e-22 Score=181.59 Aligned_cols=256 Identities=13% Similarity=0.215 Sum_probs=204.2
Q ss_pred EEEEEEc-CCEEEEee--CCCcEEEEeCCcc---ccccc-cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCccee
Q 047728 113 IYSLAAA-GDLLYTGS--DSKNIRVWKNQRE---FSGFK-SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIH 183 (474)
Q Consensus 113 i~~~~~~-~~~l~tgs--~dg~v~vwd~~~~---~~~~~-~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~ 183 (474)
+.++.++ .++|++++ .|..|++|.-... +.... ...+.-.|++.. .-++++|+..+.|+|||+....+.
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h-- 114 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH-- 114 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHh--
Confidence 7888888 44466554 5778999963322 11111 111122233322 479999999999999999854332
Q ss_pred eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeec-C
Q 047728 184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH-D 262 (474)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~ 262 (474)
..+.+|...|+++.++....+|++++..|.|.|..+.++.....+... .
T Consensus 115 ------------------------------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg 164 (673)
T KOG4378|consen 115 ------------------------------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG 164 (673)
T ss_pred ------------------------------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC
Confidence 234569999999999999999999999999999999998887777654 4
Q ss_pred cceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecC
Q 047728 263 DAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERE 339 (474)
Q Consensus 263 ~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~ 339 (474)
..|.-+.+++.. +|.+++.+|.|.+||...... .......|..+...++|+| +..+|++.+.|..|.+||.+
T Consensus 165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp-----~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP-----IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred CeEEEeecccccceeeEeeccCCeEEEEeccCCCc-----ccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 556688999887 788999999999999975544 3455678999999999999 66788899999999999999
Q ss_pred cccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728 340 LNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD 406 (474)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 406 (474)
.......+...|....++|.++|.+|++|...|.|..||++..+. ++.++..|...|++++|-+..
T Consensus 240 s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~-Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 240 SQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA-PVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCC-CceEeeecccceeEEEeeecc
Confidence 887777778889999999999999999999999999999997655 478899999999999998874
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.6e-21 Score=179.09 Aligned_cols=280 Identities=19% Similarity=0.264 Sum_probs=213.9
Q ss_pred cCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcc---ccccc-cCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcce
Q 047728 110 EGHIYSLAAA--GDLLYTGSDSKNIRVWKNQRE---FSGFK-SNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASI 182 (474)
Q Consensus 110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~---~~~~~-~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~ 182 (474)
...|.|++++ .+.||.+-.||+|.||+.... ...+. +....|.+++|. +.+|++.+.+|.|.-||+.+.+...
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKY 104 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeE
Confidence 3579999998 668999999999999985532 22233 346779999999 8899999999999999999887653
Q ss_pred eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee--eee
Q 047728 183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES--VIA 260 (474)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~ 260 (474)
... ...++|++++.+|.+..++.|++||.+..++...++.... +..
T Consensus 105 ~~d--------------------------------~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r 152 (691)
T KOG2048|consen 105 NID--------------------------------SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR 152 (691)
T ss_pred Eec--------------------------------CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc
Confidence 222 2567899999999999999999999888888877665433 334
Q ss_pred cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeee-eeee-ecccccEEEEEEcCCCCEEEEEcCCCcEEEee
Q 047728 261 HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFF-SQTL-LKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337 (474)
Q Consensus 261 ~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~-~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d 337 (474)
.++.|.++.|++++ .++.|+.||.|++||...+........ ...+ .....-|+++.|-. ...|++|.+.|+|.+||
T Consensus 153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWD 231 (691)
T ss_pred ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEc
Confidence 56899999999999 699999999999999986654221110 0111 11344578888874 45788899999999999
Q ss_pred cCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCc--eEEEEeecCCccceEEEEEeeCCccccccc
Q 047728 338 RELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENE--HICLSMLTGHSGPVKCLAVEKDDESLSREK 413 (474)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 413 (474)
...+... +....|...|.|+.. +++++++++.|+.|..|...++. .+.......|...|.+++..++
T Consensus 232 ~~~gTLi-qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-------- 302 (691)
T KOG2048|consen 232 SIFGTLI-QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-------- 302 (691)
T ss_pred ccCcchh-hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--------
Confidence 9887654 455667788877765 57899999999999999887653 3334455678888999999887
Q ss_pred eEEEEEecCCCcEEEEEccC
Q 047728 414 RWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 414 ~~~l~s~s~Dg~i~vw~~~~ 433 (474)
.+++|+.|..+.+-....
T Consensus 303 --~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 303 --ALISGGRDFTLAICSSRE 320 (691)
T ss_pred --eEEecceeeEEEEccccc
Confidence 578888888777665443
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=2.3e-22 Score=186.37 Aligned_cols=265 Identities=20% Similarity=0.278 Sum_probs=193.2
Q ss_pred CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728 158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS 237 (474)
Q Consensus 158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 237 (474)
...|+.+.+||.|.++|.....-... ......+..|...|.++.|.|....|++
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~e--------------------------e~~lk~~~aH~nAifDl~wapge~~lVs 117 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLE--------------------------ERQLKKPLAHKNAIFDLKWAPGESLLVS 117 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchh--------------------------hhhhcccccccceeEeeccCCCceeEEE
Confidence 34799999999999999876543200 0011345669999999999997789999
Q ss_pred EECCCcEEEEEcCCcceeee--eeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCcee-e-------------
Q 047728 238 ASWDKTFKVWRTSDYKCLES--VIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTK-H------------- 299 (474)
Q Consensus 238 ~s~dg~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~-~------------- 299 (474)
++.|.++++||+++.+++.. +.+|...|.+++|.+.+ .|++|+.||.|.|||++-...... .
T Consensus 118 asGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 118 ASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred ccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 99999999999999988877 88999999999999998 899999999999999874331000 0
Q ss_pred e-------eeeeeecccccEEE---EEEcCCCCEEEEEcC-CCcEEEeecCcccccceee-------eec---ceeeEEE
Q 047728 300 F-------FSQTLLKQECAVTA---LAISPDAAIVYCGSS-DGLVNFWERELNLSHGGVL-------RGH---KLAILCL 358 (474)
Q Consensus 300 ~-------~~~~~~~~~~~v~~---l~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~-------~~~---~~~v~~~ 358 (474)
. -......+...|.+ +.+..|...|++++. |+.|+|||++......... ..| ...++++
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL 277 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL 277 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence 0 01111223334444 455567788888777 9999999998765432211 112 2334455
Q ss_pred Ee--cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccc--eEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 359 VT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGP--VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 359 ~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
.. .|.+|++.+.|+.|++|++.+.....+..+.++... -..-..+|++. +|++|+.|....+|.+...
T Consensus 278 ~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~--------~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 278 ILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC--------SLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred EecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc--------eEeccCCCcceeeeeecCc
Confidence 44 579998888899999999987665445555554322 12234678888 9999999999999999987
Q ss_pred CCCCCCCcccccccCCCCCCCccccCCC
Q 047728 435 APPLVSTTQQHPLEGHGVAPNSLPYAPS 462 (474)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~v~~l~~~p~ 462 (474)
+. ....+.+|...|..+.|.|+
T Consensus 350 e~------~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 350 EA------PPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred cC------ChhhhhCcceEEEEEeeccc
Confidence 53 34457889999999999874
No 147
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.5e-21 Score=186.76 Aligned_cols=242 Identities=18% Similarity=0.224 Sum_probs=196.8
Q ss_pred cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728 146 SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI 223 (474)
Q Consensus 146 ~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 223 (474)
.|...-+.|+|. ++.|++++.||.|++|+........ .....+...|
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-------------------------------~ti~~~g~~v 59 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-------------------------------ETIDISGELV 59 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-------------------------------chhhccCcee
Confidence 578888889987 7899999999999999976652110 0111166677
Q ss_pred eEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728 224 SSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS 302 (474)
Q Consensus 224 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 302 (474)
.+++.. ..+|++|+.+++|.+|.+.+++.-..+....-++++++++-+| +++.|+.|-.|++-+...... .
T Consensus 60 ~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~------~ 131 (933)
T KOG1274|consen 60 SSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQ------E 131 (933)
T ss_pred EEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccch------h
Confidence 777664 4589999999999999999888766666677899999999999 999999999999999876654 6
Q ss_pred eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee---------ecceeeEEEEecCCEEEEEeCCCc
Q 047728 303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR---------GHKLAILCLVTAGNLVFSGSADMS 373 (474)
Q Consensus 303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---------~~~~~v~~~~~~~~~l~sgs~dg~ 373 (474)
..+.+|..+|.++.|+|++++||+.+.||.|++||++.+.....+.. .......+|+|++..++....|+.
T Consensus 132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT 211 (933)
T ss_pred eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence 78889999999999999999999999999999999987754322211 122334778889888888899999
Q ss_pred EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 374 ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 374 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
|++|+..+.+.........+...+.+++|+|.|. |||+++.||.|.|||+.+.
T Consensus 212 Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~--------YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 212 VKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK--------YIAASTLDGQILVWNVDTH 264 (933)
T ss_pred EEEEccCCceeheeecccccccceEEEEEcCCCc--------EEeeeccCCcEEEEecccc
Confidence 9999999887554444455666699999999999 9999999999999999873
No 148
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.2e-21 Score=163.77 Aligned_cols=283 Identities=17% Similarity=0.196 Sum_probs=203.9
Q ss_pred ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeC--CccccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728 100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW 173 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw 173 (474)
..+-.+|.... ..|+.|+ |.+||+|+.||.|.|||. ...-..+.+|..+|++++|+ |..|+|++.|..|.+|
T Consensus 15 Eel~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lw 92 (405)
T KOG1273|consen 15 EELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLW 92 (405)
T ss_pred HhhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEE
Confidence 34444444333 5666666 999999999999999994 35667789999999999998 7899999999999999
Q ss_pred ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC-CEEEEEECCCcEEEEEcCCc
Q 047728 174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ-NLLYSASWDKTFKVWRTSDY 252 (474)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~ 252 (474)
|+..+.+....+ -..+|+...|+|.. +..++.-.+..-.+-++...
T Consensus 93 Dl~~gs~l~rir---------------------------------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~ 139 (405)
T KOG1273|consen 93 DLLKGSPLKRIR---------------------------------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP 139 (405)
T ss_pred eccCCCceeEEE---------------------------------ccCccceeeeccccCCeEEEEEecCCcEEEEecCC
Confidence 999998654443 55689999999933 34444434444555555542
Q ss_pred ceeeeeeecC----cceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc-cccEEEEEEcCCCCEEEE
Q 047728 253 KCLESVIAHD----DAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ-ECAVTALAISPDAAIVYC 326 (474)
Q Consensus 253 ~~~~~~~~~~----~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~ 326 (474)
+....-.... ....+..|.+.| ++++|...|.+.++|..+... ...+... ...|..+.++..|+.|+.
T Consensus 140 ~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~------vas~rits~~~IK~I~~s~~g~~lii 213 (405)
T KOG1273|consen 140 KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC------VASFRITSVQAIKQIIVSRKGRFLII 213 (405)
T ss_pred ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchhee------eeeeeechheeeeEEEEeccCcEEEE
Confidence 2111111111 112233577777 999999999999999886542 3333333 367999999999999999
Q ss_pred EcCCCcEEEeecCccccc------------ceeeeecceeeEEEEecCCEEEEEeC-CCcEEEEECCCCceEEEEeecCC
Q 047728 327 GSSDGLVNFWERELNLSH------------GGVLRGHKLAILCLVTAGNLVFSGSA-DMSICIWRRKENEHICLSMLTGH 393 (474)
Q Consensus 327 ~~~dg~i~v~d~~~~~~~------------~~~~~~~~~~v~~~~~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~h 393 (474)
.+.|..|+.|+++.-... ......-.-...|++-+|.|+++|+. -..++||....+. ++..+.|-
T Consensus 214 NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs--LVKILhG~ 291 (405)
T KOG1273|consen 214 NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS--LVKILHGT 291 (405)
T ss_pred ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcc--eeeeecCC
Confidence 999999999997622111 11112223345788889999998874 4689999999888 56677776
Q ss_pred c-cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 394 S-GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 394 ~-~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
. ....++.|+|-.. ++++- ..|.|++|.....
T Consensus 292 kgE~l~DV~whp~rp--------~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 292 KGEELLDVNWHPVRP--------IIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred chhheeeccccccee--------eeeec-cCCceEEEEeecc
Confidence 6 5688999999987 77777 7789999987653
No 149
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=3e-22 Score=185.34 Aligned_cols=118 Identities=22% Similarity=0.355 Sum_probs=100.5
Q ss_pred cEEEEEEcC-CCCEEEEEcCCCcEEEeecCcc------cccceeeeecceeeEEEEec---CCEEEEEeCCCcEEEEECC
Q 047728 311 AVTALAISP-DAAIVYCGSSDGLVNFWERELN------LSHGGVLRGHKLAILCLVTA---GNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 311 ~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~------~~~~~~~~~~~~~v~~~~~~---~~~l~sgs~dg~i~iwd~~ 380 (474)
.|+.+.|+| |...|++++.||.|++|.+..+ .....++..|...|..+.+. .+.|++++.|.+|++||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 467777888 7889999999999999997654 23445677888888777764 7899999999999999999
Q ss_pred CCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCC
Q 047728 381 ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL 438 (474)
Q Consensus 381 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~ 438 (474)
+.. ....+.+|++.|.+++|+|+|+ .+++.+.||+|+||+-+.++.+.
T Consensus 709 ~~~--~~~~l~gHtdqIf~~AWSpdGr--------~~AtVcKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 709 NAK--LYSRLVGHTDQIFGIAWSPDGR--------RIATVCKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred hhh--hhheeccCcCceeEEEECCCCc--------ceeeeecCceEEEeCCCCCCCcc
Confidence 887 3568899999999999999999 89999999999999988875443
No 150
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.3e-21 Score=168.72 Aligned_cols=272 Identities=14% Similarity=0.250 Sum_probs=200.4
Q ss_pred CEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec----CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccce
Q 047728 121 DLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKD 194 (474)
Q Consensus 121 ~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 194 (474)
..+|++...|.|++||.. +.+..++++...++.+.|. +..+.+|+.||+|++||++...........
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~------- 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT------- 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-------
Confidence 678999999999999854 5888999999999999886 468999999999999999987655433322
Q ss_pred eeeeecCCCCeEEEeeeccceeeecc-CCeeEEEecCCCCEEEEEE----CCCcEEEEEcCCcce-eeee-eecCcceeE
Q 047728 195 FIKCSMKPSNYIEVRRHRNGLWIKHF-DAISSLSMSEDQNLLYSAS----WDKTFKVWRTSDYKC-LESV-IAHDDAVNS 267 (474)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s----~dg~i~iwd~~~~~~-~~~~-~~~~~~v~~ 267 (474)
.+. .+..|++.+..++.+++|+ .+..|.+||++..+. +..+ ..|.+.|++
T Consensus 114 -----------------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~ 170 (376)
T KOG1188|consen 114 -----------------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQ 170 (376)
T ss_pred -----------------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCccee
Confidence 233 5677888877788888876 467899999998766 5554 569999999
Q ss_pred EEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEEEcCCCcEEEeecCccccc
Q 047728 268 IVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYCGSSDGLVNFWERELNLSH 344 (474)
Q Consensus 268 v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~ 344 (474)
+.|+|.. +|++|+.||.|.+||++.... ...+.....+...|.++.|..++ +.|.+-+..+...+|+++.+...
T Consensus 171 lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E---eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 171 LRFHPSDPNLLLSGSVDGLVNLFDTKKDNE---EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred EEecCCCCCeEEeecccceEEeeecCCCcc---hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 9999987 999999999999999975532 11334455677889999999876 56888899999999999876543
Q ss_pred ceeeee------------cceeeEEEEe-cCCEEEEEeC-CCcEEEEECC---CCc-eEEEEeecC-CccceEEEEEeeC
Q 047728 345 GGVLRG------------HKLAILCLVT-AGNLVFSGSA-DMSICIWRRK---ENE-HICLSMLTG-HSGPVKCLAVEKD 405 (474)
Q Consensus 345 ~~~~~~------------~~~~v~~~~~-~~~~l~sgs~-dg~i~iwd~~---~~~-~~~~~~~~~-h~~~v~~l~~~~~ 405 (474)
...... -..-|-+.++ +...++.++. -+...++-+. ++. ...+..+.+ |..-|+++.|...
T Consensus 248 ~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~ 327 (376)
T KOG1188|consen 248 TWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVK 327 (376)
T ss_pred hcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcc
Confidence 322221 1112233334 3445555444 5666665443 221 112344555 7778899999877
Q ss_pred CccccccceEEEEEecCCCcEEEEEccC
Q 047728 406 DESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 406 ~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
+. +++|||+||.+.+|....
T Consensus 328 ~~--------~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 328 ND--------VLYTGGEDGLLQAWKVED 347 (376)
T ss_pred cc--------eeeccCCCceEEEEecCC
Confidence 77 999999999999999643
No 151
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=1.2e-21 Score=167.89 Aligned_cols=284 Identities=19% Similarity=0.260 Sum_probs=206.6
Q ss_pred eeeecCcEEEEEEc-------CCEEEEeeCCCcEEEEeCCc-----ccccc--ccCccCEEEEEec------CCEEEEEe
Q 047728 106 LVREEGHIYSLAAA-------GDLLYTGSDSKNIRVWKNQR-----EFSGF--KSNSGLVKAIVIS------NEKIFSGH 165 (474)
Q Consensus 106 l~~h~~~i~~~~~~-------~~~l~tgs~dg~v~vwd~~~-----~~~~~--~~h~~~V~~i~~~------~~~l~s~~ 165 (474)
...|..+|..++|+ ...+||.+.+ .+.+|+... .++.+ ..|...-..++|. +-+++.|+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 34677889999987 3366776654 588887332 12222 1366677777775 33789999
Q ss_pred CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCCcE
Q 047728 166 QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDKTF 244 (474)
Q Consensus 166 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i 244 (474)
.-|.|+|.|+.++++. +.+.+|..+|+.|.+.|+ .+++++++.|..|
T Consensus 113 ~~GvIrVid~~~~~~~--------------------------------~~~~ghG~sINeik~~p~~~qlvls~SkD~sv 160 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCS--------------------------------KNYRGHGGSINEIKFHPDRPQLVLSASKDHSV 160 (385)
T ss_pred ceeEEEEEecchhhhc--------------------------------cceeccCccchhhhcCCCCCcEEEEecCCceE
Confidence 9999999999988765 345679999999999995 4789999999999
Q ss_pred EEEEcCCcceeeee---eecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCce---------------------ee
Q 047728 245 KVWRTSDYKCLESV---IAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGT---------------------KH 299 (474)
Q Consensus 245 ~iwd~~~~~~~~~~---~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~---------------------~~ 299 (474)
++|++++..++..+ .+|.+.|.++.|+.++ ++++++.|..|++|++....-.. ..
T Consensus 161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~ 240 (385)
T KOG1034|consen 161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH 240 (385)
T ss_pred EEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence 99999999999887 4699999999999999 99999999999999987321100 00
Q ss_pred eee-eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec-Ccccccceeeee--------------cceeeEEE--Eec
Q 047728 300 FFS-QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER-ELNLSHGGVLRG--------------HKLAILCL--VTA 361 (474)
Q Consensus 300 ~~~-~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~--------------~~~~v~~~--~~~ 361 (474)
++. .+...|...|.|+.|- |+++++-+-++.|..|.. +-.+.......+ -...-+.+ .+-
T Consensus 241 fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~ 318 (385)
T KOG1034|consen 241 FPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW 318 (385)
T ss_pred cccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence 011 1334466677777775 578888888999999987 222221111111 11112333 344
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeecC--CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 362 GNLVFSGSADMSICIWRRKENEHICLSMLTG--HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 362 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
++.|+.|...|.|.+||++..++....++.. ....|...+|+.|+. +|+...+|++|.-||.-
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs--------~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS--------ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc--------EEEEEeCCCcEEEEEee
Confidence 8899999999999999999877543333332 245799999999999 89999999999988853
No 152
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=2.1e-20 Score=173.81 Aligned_cols=252 Identities=15% Similarity=0.141 Sum_probs=173.0
Q ss_pred CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEE-EE
Q 047728 159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLL-YS 237 (474)
Q Consensus 159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s 237 (474)
+.+++++.|+.|++||+.+++..... . +...+.+++|+|+++.+ ++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~--------------------------------~-~~~~~~~l~~~~dg~~l~~~ 48 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTF--------------------------------P-VGQRPRGITLSKDGKLLYVC 48 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEE--------------------------------E-CCCCCCceEECCCCCEEEEE
Confidence 56889999999999999877543211 1 22346789999999877 56
Q ss_pred EECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEE-EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728 238 ASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL 315 (474)
Q Consensus 238 ~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 315 (474)
++.++.|++||..+++.+..+..+.. +..++++|++ .++ ++..++.|++||++.... ...+ .....+..+
T Consensus 49 ~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~------~~~~-~~~~~~~~~ 120 (300)
T TIGR03866 49 ASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKV------LAEI-PVGVEPEGM 120 (300)
T ss_pred ECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE------EeEe-eCCCCcceE
Confidence 67889999999999888777765443 5678899998 454 455689999999975321 1111 223346789
Q ss_pred EEcCCCCEEEEEcCCC-cEEEeecCcccccceeeeecceeeEEEEecCCEEEEE-eCCCcEEEEECCCCceEEEEeecCC
Q 047728 316 AISPDAAIVYCGSSDG-LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG-SADMSICIWRRKENEHICLSMLTGH 393 (474)
Q Consensus 316 ~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg-s~dg~i~iwd~~~~~~~~~~~~~~h 393 (474)
+|+|++.+++++..++ .+.+||.++..........+.....++++++++|+++ ..++.|++||+.+++.. ..+..+
T Consensus 121 ~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~--~~~~~~ 198 (300)
T TIGR03866 121 AVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI--KKITFE 198 (300)
T ss_pred EECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee--eeeeec
Confidence 9999999999988775 4677898776554333334444557788899988654 46999999999987632 232211
Q ss_pred -----cc--ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcC
Q 047728 394 -----SG--PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQ 466 (474)
Q Consensus 394 -----~~--~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~D 466 (474)
.. ....++|+|+++. ++++.+.++.|.+||+.+++.. ..+ .+...+.++ +|+||
T Consensus 199 ~~~~~~~~~~~~~i~~s~dg~~-------~~~~~~~~~~i~v~d~~~~~~~-------~~~-~~~~~~~~~----~~~~~ 259 (300)
T TIGR03866 199 IPGVHPEAVQPVGIKLTKDGKT-------AFVALGPANRVAVVDAKTYEVL-------DYL-LVGQRVWQL----AFTPD 259 (300)
T ss_pred ccccccccCCccceEECCCCCE-------EEEEcCCCCeEEEEECCCCcEE-------EEE-EeCCCcceE----EECCC
Confidence 11 2356889999982 2444556778999999765321 111 122345555 78888
Q ss_pred Cceeec
Q 047728 467 GRICQK 472 (474)
Q Consensus 467 g~~l~~ 472 (474)
|+.|..
T Consensus 260 g~~l~~ 265 (300)
T TIGR03866 260 EKYLLT 265 (300)
T ss_pred CCEEEE
Confidence 987764
No 153
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=1.2e-21 Score=170.95 Aligned_cols=236 Identities=16% Similarity=0.261 Sum_probs=178.4
Q ss_pred eeccCCeeEEEecCCC--CEEEEEECCCcEEEEEcC----------------CcceeeeeeecCcceeEEEecCC--CeE
Q 047728 217 IKHFDAISSLSMSEDQ--NLLYSASWDKTFKVWRTS----------------DYKCLESVIAHDDAVNSIVAGFD--GLV 276 (474)
Q Consensus 217 ~~h~~~V~~l~~~~~~--~~l~s~s~dg~i~iwd~~----------------~~~~~~~~~~~~~~v~~v~~~~~--~~l 276 (474)
..|.+.++.+...+-+ .+.++=+..|.|.|||+. ..+++.++.+|...=++++|+|- |.|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 4577788888777754 444555678999999984 23567788899999999999994 489
Q ss_pred EEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccc-cceeeeeccee
Q 047728 277 FTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLS-HGGVLRGHKLA 354 (474)
Q Consensus 277 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~~ 354 (474)
++|..-+.|++|....+. -.+-...+.+|...|..|+|+| ....|++|+.||+|+|||++.+.. .....+.|...
T Consensus 228 lsGDc~~~I~lw~~~~g~---W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGS---WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD 304 (440)
T ss_pred ccCccccceEeeeeccCc---eeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc
Confidence 999999999999877532 2233456677999999999999 557899999999999999998733 22344678777
Q ss_pred eEEEEec--CCEEEEEeCCCcEEEEECCCCce-EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728 355 ILCLVTA--GNLVFSGSADMSICIWRRKENEH-ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431 (474)
Q Consensus 355 v~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~ 431 (474)
|..++++ ..+|++|+.||+++|||++.-+. .++..++-|..+|++|.|+|.... .|++++.|..|.|||+
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s-------~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS-------VIAASGEDNQITIWDL 377 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc-------eEEeccCCCcEEEEEe
Confidence 7777775 45899999999999999975431 257789999999999999998775 7999999999999999
Q ss_pred cCCCCCCC---------CCcccccccCC--CCCCCccccCCC
Q 047728 432 SEQAPPLV---------STTQQHPLEGH--GVAPNSLPYAPS 462 (474)
Q Consensus 432 ~~~~~~~~---------~~~~~~~~~~~--~~~v~~l~~~p~ 462 (474)
.-...... ...+.+-+-.| ...+..+.||+-
T Consensus 378 svE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Q 419 (440)
T KOG0302|consen 378 SVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQ 419 (440)
T ss_pred eccCChhhhccccccchhcCCceeEEEecchhHhhhheeccC
Confidence 75433110 11122233334 345788888864
No 154
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=1.8e-20 Score=165.13 Aligned_cols=300 Identities=19% Similarity=0.249 Sum_probs=205.9
Q ss_pred cCcEEEEEEc---CCEEEEeeCCCcEEEEeCCc-----------cccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728 110 EGHIYSLAAA---GDLLYTGSDSKNIRVWKNQR-----------EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW 173 (474)
Q Consensus 110 ~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~-----------~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw 173 (474)
..+|+++.+. .+.|+||+.|..|++|...+ .+..+..|..+|+++.|+ ++.|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 3568888887 33899999999999996331 244577899999999999 6699999999999999
Q ss_pred ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc
Q 047728 174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK 253 (474)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 253 (474)
....-.... ... ....+...+.. ..++.+|...|..++|+|++.++++++.|..+++||+..|.
T Consensus 93 k~~~~~~~~-~d~----------e~~~~ke~w~v-----~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 93 KQGDVRIFD-ADT----------EADLNKEKWVV-----KKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred EecCcCCcc-ccc----------hhhhCccceEE-----EEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence 877421110 000 00111111111 13456699999999999999999999999999999999999
Q ss_pred eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeee--eeeeeec---------------ccccEEEE
Q 047728 254 CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHF--FSQTLLK---------------QECAVTAL 315 (474)
Q Consensus 254 ~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~---------------~~~~v~~l 315 (474)
.+..+..|...|..++|.|-+ ++++-+.|...+.+.+...+...... ....... ...-...+
T Consensus 157 l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 999999999999999999988 88888888877777665433221111 0000000 11235668
Q ss_pred EEcCCCCEEEEEcC----CC-----cEEEeecCcccccceeeeecceeeEEEE---------e----------cCCEEEE
Q 047728 316 AISPDAAIVYCGSS----DG-----LVNFWERELNLSHGGVLRGHKLAILCLV---------T----------AGNLVFS 367 (474)
Q Consensus 316 ~~~~~~~~l~~~~~----dg-----~i~v~d~~~~~~~~~~~~~~~~~v~~~~---------~----------~~~~l~s 367 (474)
+|+|+|.+|++... .+ ..++|+......+...+..-....+.+. + --+++++
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 89999999987542 22 2345554433332222222222222211 1 0123444
Q ss_pred EeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 368 GSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 368 gs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
......|+|||.+...+.. ..-.-|-.+|++++|++++. +|+..|.||...+-.++..
T Consensus 317 iAt~~svyvydtq~~~P~~-~v~nihy~~iTDiaws~dg~--------~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IATKNSVYVYDTQTLEPLA-VVDNIHYSAITDIAWSDDGS--------VLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred EeecceEEEeccccccceE-EEeeeeeeeecceeecCCCc--------EEEEeccCCceEEEEEcch
Confidence 4446689999999877543 34455889999999999999 8999999999888777654
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=8e-22 Score=194.69 Aligned_cols=250 Identities=19% Similarity=0.252 Sum_probs=194.9
Q ss_pred ccCEEEEEec--CC----EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC
Q 047728 148 SGLVKAIVIS--NE----KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD 221 (474)
Q Consensus 148 ~~~V~~i~~~--~~----~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 221 (474)
...-+.++|. +. .|+.|..||.|.+||...-... .....+ ..+..|.+
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~--~~~~~l------------------------a~~~~h~G 117 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN--ASEEVL------------------------ATKSKHTG 117 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccC--cchHHH------------------------hhhcccCC
Confidence 4456778886 33 5899999999999998763110 000000 22345999
Q ss_pred CeeEEEecCC-CCEEEEEECCCcEEEEEcCCcceeeeee--ecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCc
Q 047728 222 AISSLSMSED-QNLLYSASWDKTFKVWRTSDYKCLESVI--AHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 222 ~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
.|..+.|++. +++|++|+.||.|.|||+...+.-.++. ...+.|.+++|+..- .|++++.+|.+.|||++..+..
T Consensus 118 ~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi 197 (1049)
T KOG0307|consen 118 PVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI 197 (1049)
T ss_pred ceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc
Confidence 9999999995 4599999999999999998866554442 245789999999876 8999999999999999965331
Q ss_pred eeeeeeeeeecccccEEEEEEcCCC-CEEEEEcCCC---cEEEeecCcccccceeeeecceeeEEEEe---cCCEEEEEe
Q 047728 297 TKHFFSQTLLKQECAVTALAISPDA-AIVYCGSSDG---LVNFWERELNLSHGGVLRGHKLAILCLVT---AGNLVFSGS 369 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~sgs 369 (474)
+..........+..++|+|+. ..|++++.|. .|.+||++......+++.+|...++++++ |..+|++++
T Consensus 198 ----i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg 273 (1049)
T KOG0307|consen 198 ----IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG 273 (1049)
T ss_pred ----cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc
Confidence 112222233558899999965 4566666554 58999999888888888999999999987 458999999
Q ss_pred CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 370 ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 370 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
.|+.|.+|+.++++ .+..+.....++..+.|+|.... +++.++-||.|.|+.+.....
T Consensus 274 kD~~ii~wN~~tgE--vl~~~p~~~nW~fdv~w~pr~P~-------~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 274 KDNRIICWNPNTGE--VLGELPAQGNWCFDVQWCPRNPS-------VMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred CCCCeeEecCCCce--EeeecCCCCcceeeeeecCCCcc-------hhhhheeccceeeeeeecCCc
Confidence 99999999999988 56788888899999999998875 789999999999999987653
No 156
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.87 E-value=2.6e-21 Score=161.11 Aligned_cols=284 Identities=15% Similarity=0.199 Sum_probs=197.0
Q ss_pred eeeeeeecCcEEEEEEc-CCEEEEeeCCCcEEEEeCC--ccccccc-cCccCEEEEEec-CCEEEEEeCCCeEEEEecCC
Q 047728 103 IGSLVREEGHIYSLAAA-GDLLYTGSDSKNIRVWKNQ--REFSGFK-SNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSS 177 (474)
Q Consensus 103 ~~~l~~h~~~i~~~~~~-~~~l~tgs~dg~v~vwd~~--~~~~~~~-~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~ 177 (474)
+-.|.+|.+.|+|+.|+ +++|.+|..-|.|++|+++ +....++ .|...|+.+..- ++.+.+-+.|+.+.+|++..
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred eeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccC
Confidence 34566999999999998 7789999999999999854 5566677 577888888876 68999999999999999987
Q ss_pred CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-----C----CEEEEEECCC-cEEEE
Q 047728 178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-----Q----NLLYSASWDK-TFKVW 247 (474)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-----~----~~l~s~s~dg-~i~iw 247 (474)
...... |.-.++++.|.+. + ..++.-++.. .+.+-
T Consensus 87 s~~i~i-----------------------------------~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~ 131 (323)
T KOG0322|consen 87 SAFISI-----------------------------------HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQ 131 (323)
T ss_pred cceEEE-----------------------------------eeeeccccccccceeccCCCcchhheecCCcccchhhhh
Confidence 543321 2222333333221 0 1111111000 02222
Q ss_pred EcCCcceeeee----eecCcceeEEEecCC-C---eEEEeeCCCcEEEEEcccCCCcee----eeeeeeeecccccEEEE
Q 047728 248 RTSDYKCLESV----IAHDDAVNSIVAGFD-G---LVFTGSADGTVKVWRRELQGKGTK----HFFSQTLLKQECAVTAL 315 (474)
Q Consensus 248 d~~~~~~~~~~----~~~~~~v~~v~~~~~-~---~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~v~~l 315 (474)
|......+... ....+.+.+..+..+ + .+++|-++|.+.+||+..+.+... .........|..+|.++
T Consensus 132 D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsl 211 (323)
T KOG0322|consen 132 DGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSL 211 (323)
T ss_pred ccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceee
Confidence 32222122111 123456666664333 2 788899999999999987532111 11234456788999999
Q ss_pred EEcCCCCEEEEEcCCCcEEEeecCccc--c-ccee--eeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee
Q 047728 316 AISPDAAIVYCGSSDGLVNFWERELNL--S-HGGV--LRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML 390 (474)
Q Consensus 316 ~~~~~~~~l~~~~~dg~i~v~d~~~~~--~-~~~~--~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 390 (474)
.+.+.-..=++|+.+..+..|.+.... . +... ++.-...-+.+.+|++.+|+++.|+.||||..++.+ ++..+
T Consensus 212 dyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~--pLAVL 289 (323)
T KOG0322|consen 212 DYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN--PLAVL 289 (323)
T ss_pred eechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC--chhhh
Confidence 999876666778888888898875431 1 1111 112223347788999999999999999999999998 57889
Q ss_pred cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728 391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431 (474)
Q Consensus 391 ~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~ 431 (474)
+-|.+.|++++|+|+.+ ++|.++.|++|.+|++
T Consensus 290 kyHsagvn~vAfspd~~--------lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 KYHSAGVNAVAFSPDCE--------LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhcceeEEEeCCCCc--------hhhhccCCceEEeeec
Confidence 99999999999999988 9999999999999986
No 157
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=8.9e-21 Score=174.66 Aligned_cols=271 Identities=18% Similarity=0.245 Sum_probs=198.3
Q ss_pred cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728 142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH 219 (474)
Q Consensus 142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 219 (474)
..+.+|.+.|.+|..+ +.+|++|+.||+||||.+.++.++.... -
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~---------------------------------~ 440 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ---------------------------------F 440 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe---------------------------------e
Confidence 3578999999999987 8899999999999999999999876654 3
Q ss_pred cCCeeEEEecCCCC--EEEEEECCCcEEEEEcCCc---------------------------------c----eeeeeee
Q 047728 220 FDAISSLSMSEDQN--LLYSASWDKTFKVWRTSDY---------------------------------K----CLESVIA 260 (474)
Q Consensus 220 ~~~V~~l~~~~~~~--~l~s~s~dg~i~iwd~~~~---------------------------------~----~~~~~~~ 260 (474)
.+.|.|++|+|.+. .|+++- ...+.|.+..-| + -+.....
T Consensus 441 d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~ 519 (733)
T KOG0650|consen 441 DSEIRSVAWNPLSDLCVLAVAV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIK 519 (733)
T ss_pred cceeEEEEecCCCCceeEEEEe-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEe
Confidence 34788999988543 333333 333444432111 0 1123345
Q ss_pred cCcceeEEEecCCC-eEEEeeCC---CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEe
Q 047728 261 HDDAVNSIVAGFDG-LVFTGSAD---GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFW 336 (474)
Q Consensus 261 ~~~~v~~v~~~~~~-~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~ 336 (474)
|...|..+.|+..| +|++...+ ..|.|.++..... ...+....+.|.++.|+|...+|++++. ..|++|
T Consensus 520 ~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s------Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiY 592 (733)
T KOG0650|consen 520 HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS------QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIY 592 (733)
T ss_pred cCCccceeeeecCCceEEEeccCCCcceEEEEecccccc------cCchhhcCCceeEEEecCCCceEEEEec-cceEEE
Confidence 78899999999999 77776654 4588888764432 3445566778999999999999888765 679999
Q ss_pred ecCcccccceeeeecc-eeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceE
Q 047728 337 ERELNLSHGGVLRGHK-LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRW 415 (474)
Q Consensus 337 d~~~~~~~~~~~~~~~-~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 415 (474)
|+.........+.+.. ...+++++.|.-|+.|+.|+.++.||+.-... ...++..|...|++|+|++.-.
T Consensus 593 dL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk-Pyk~lr~H~~avr~Va~H~ryP-------- 663 (733)
T KOG0650|consen 593 DLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK-PYKTLRLHEKAVRSVAFHKRYP-------- 663 (733)
T ss_pred ehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc-hhHHhhhhhhhhhhhhhccccc--------
Confidence 9987655544444322 34477788899999999999999999986643 3678888999999999999988
Q ss_pred EEEEecCCCcEEEEEcc--CCCCCCCCCcccccccCCCCC----CCccccCCC
Q 047728 416 ILYSGSLDKSVKMWRVS--EQAPPLVSTTQQHPLEGHGVA----PNSLPYAPS 462 (474)
Q Consensus 416 ~l~s~s~Dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~----v~~l~~~p~ 462 (474)
++++|+.||++.|+.-. +.-.......+...+.+|... |....|||.
T Consensus 664 Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~ 716 (733)
T KOG0650|consen 664 LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR 716 (733)
T ss_pred eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCC
Confidence 99999999999998421 111001112466778888766 777789983
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=8.8e-21 Score=159.92 Aligned_cols=249 Identities=19% Similarity=0.287 Sum_probs=188.4
Q ss_pred eeeeccCCeeEEEecC-CCCEEEEEECC-------CcEEEEEcCC---------cceeeeee-ecCcceeEEEecCCC-e
Q 047728 215 LWIKHFDAISSLSMSE-DQNLLYSASWD-------KTFKVWRTSD---------YKCLESVI-AHDDAVNSIVAGFDG-L 275 (474)
Q Consensus 215 ~~~~h~~~V~~l~~~~-~~~~l~s~s~d-------g~i~iwd~~~---------~~~~~~~~-~~~~~v~~v~~~~~~-~ 275 (474)
+|..|.++|+.|+-+| +...|+++..+ -.+-||.+.. .+++..+. .+-+.|.|+.|.|++ .
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 4555889999999999 55666666542 2467898753 23444454 455689999999998 5
Q ss_pred EEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC--CCCEEEEEcCCCcEEEeecCcccccceeeeecce
Q 047728 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP--DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL 353 (474)
Q Consensus 276 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 353 (474)
+++- .|..|.+|++....+............+....++-+|+| +++.+++. .|+++..||+++..+...+...|..
T Consensus 138 lasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq 215 (370)
T KOG1007|consen 138 LASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQ 215 (370)
T ss_pred eEEe-ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcc
Confidence 5544 499999999987655333333333344667788999999 77777754 6889999999999888888888887
Q ss_pred eeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728 354 AILCLVTA---GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 354 ~v~~~~~~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
.+..+.++ .-+|++|+.||.|+|||.+..+. ++..+.+|...|.++.|+|.... ++++||.|..|.+|.
T Consensus 216 ~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~-pv~el~~HsHWvW~VRfn~~hdq-------LiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 216 RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF-PVQELPGHSHWVWAVRFNPEHDQ-------LILSGGSDSAVNLSC 287 (370)
T ss_pred eeeeccCCCCceEEEEEcCCCccEEEEeccCCCc-cccccCCCceEEEEEEecCccce-------EEEecCCCceeEEEe
Confidence 77776664 34789999999999999987765 48899999999999999998764 899999999999997
Q ss_pred ccCCCCC----------------------CCCCcccccccCCCCCCCccccCC-------CCCcCCceeecc
Q 047728 431 VSEQAPP----------------------LVSTTQQHPLEGHGVAPNSLPYAP-------SFSSQGRICQKR 473 (474)
Q Consensus 431 ~~~~~~~----------------------~~~~~~~~~~~~~~~~v~~l~~~p-------~~s~Dg~~l~~~ 473 (474)
...-... +.....+.++..|...|.+++|+. +.|-|||++++.
T Consensus 288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISS 359 (370)
T ss_pred ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeec
Confidence 6432110 112334557888999999999986 458999999864
No 159
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.7e-20 Score=164.41 Aligned_cols=293 Identities=15% Similarity=0.196 Sum_probs=212.6
Q ss_pred eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--------ccccccc-cCccCEEEEEec--CCEEEEEeCC
Q 047728 101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--------REFSGFK-SNSGLVKAIVIS--NEKIFSGHQD 167 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--------~~~~~~~-~h~~~V~~i~~~--~~~l~s~~~d 167 (474)
.+.+.+.+|.|.|+++.|+ +++|++|++|..+++|... +++.... .|...|.|++|+ +..+++|..+
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 3445678999999999998 7899999999999999743 3333333 355889999998 6689999999
Q ss_pred CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEE
Q 047728 168 GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW 247 (474)
Q Consensus 168 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw 247 (474)
++|.+-|+++.+.+...... ...+.|..+..+|..+.|++.+.++.|.+|
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~------------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~ 176 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANEN------------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFI 176 (609)
T ss_pred ceeEeeecccceeeeeeccc------------------------------CcccceeecccCCCCceEEEEecCceEEEE
Confidence 99999999988654322211 134589999999988999999999999999
Q ss_pred EcCCcc-eee--eeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeee-eeeeecccccEEEEEEcCCC
Q 047728 248 RTSDYK-CLE--SVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFF-SQTLLKQECAVTALAISPDA 321 (474)
Q Consensus 248 d~~~~~-~~~--~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~ 321 (474)
|.+... .+. .+.........+.|+|.. +|++.+..+-+-+||++.+.......- ...+......-..+.|+|+|
T Consensus 177 D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G 256 (609)
T KOG4227|consen 177 DNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG 256 (609)
T ss_pred eccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence 998654 222 222334567788999987 889999999999999987654221111 11111112234678899999
Q ss_pred CEEEEEcCCCcEEEeecCcccccceeeeecc-------eeeEEEEe-cCCEEEEEeCCCcEEEEECCCCc----------
Q 047728 322 AIVYCGSSDGLVNFWERELNLSHGGVLRGHK-------LAILCLVT-AGNLVFSGSADMSICIWRRKENE---------- 383 (474)
Q Consensus 322 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-------~~v~~~~~-~~~~l~sgs~dg~i~iwd~~~~~---------- 383 (474)
+.|++--....-.+||+....+..... .|. ..+-++.+ +..-+++|+.+-.|++|.+....
T Consensus 257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~ 335 (609)
T KOG4227|consen 257 NQFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGH 335 (609)
T ss_pred CeehhhhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCc
Confidence 999887777777788887654432222 221 12222333 33448999999999999874211
Q ss_pred -----------eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 384 -----------HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 384 -----------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
...+.++++|.+-++.+.|+|... +|++.+....++||.--
T Consensus 336 ~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~--------~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 336 DEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN--------LLVSSGVENSFKLWSDH 387 (609)
T ss_pred chhhCchhheecceeEEEecccccccceeecCCcc--------eEeccchhhheeccccc
Confidence 012457899999999999999988 89999999999999643
No 160
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.4e-20 Score=166.87 Aligned_cols=272 Identities=13% Similarity=0.198 Sum_probs=202.8
Q ss_pred ccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728 148 SGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS 225 (474)
Q Consensus 148 ~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 225 (474)
.+.|++|.|+ ...|++++.|++++||.++.........+. -...+|.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~------------------------------l~~fPi~~ 262 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH------------------------------LEKFPIQK 262 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee------------------------------eccCccce
Confidence 5689999999 458999999999999999876433211111 14568999
Q ss_pred EEecCCCC-EEEEEECCCcEEEEEcCCcceee--eeeecC-cceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeee
Q 047728 226 LSMSEDQN-LLYSASWDKTFKVWRTSDYKCLE--SVIAHD-DAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHF 300 (474)
Q Consensus 226 l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~-~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~ 300 (474)
.+|.|+|. .+++++....++.||+.+.+... .+.++. ..+....+++++ +|+..+..|.|.+....+..-
T Consensus 263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el----- 337 (514)
T KOG2055|consen 263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL----- 337 (514)
T ss_pred eeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-----
Confidence 99999998 89999999999999998876533 233333 456777889998 999999999999987665432
Q ss_pred eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeec--ceeeEEEEecCCEEEEEeCCCcEEEEE
Q 047728 301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGH--KLAILCLVTAGNLVFSGSADMSICIWR 378 (474)
Q Consensus 301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sgs~dg~i~iwd 378 (474)
......++.|..++|+.+++.|++++.+|.|.+||++...++....... ....+|.+.++.+||+|+..|.|.|||
T Consensus 338 --i~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 338 --ITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred --hheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence 3334456789999999999999999999999999999886665544322 345578889999999999999999999
Q ss_pred CCC----CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEec--CCCcEEEEEccCCCCCCCCCcccccccCCCC
Q 047728 379 RKE----NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS--LDKSVKMWRVSEQAPPLVSTTQQHPLEGHGV 452 (474)
Q Consensus 379 ~~~----~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s--~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 452 (474)
.++ ..+.++..+..-...|+.++|+++.+ +||.+| .+..+|+-.+.....-.-.... ...-+
T Consensus 416 ~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q--------iLAiaS~~~knalrLVHvPS~TVFsNfP~~----n~~vg 483 (514)
T KOG2055|consen 416 GNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ--------ILAIASRVKKNALRLVHVPSCTVFSNFPTS----NTKVG 483 (514)
T ss_pred cchhhccCCCCchhhhhhhheeeeeeeeCcchh--------hhhhhhhccccceEEEeccceeeeccCCCC----CCccc
Confidence 653 33445667777788999999999999 777666 5678999888765221111111 22234
Q ss_pred CCCccccCCCCCcCCceeec
Q 047728 453 APNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 453 ~v~~l~~~p~~s~Dg~~l~~ 472 (474)
.|+++ +|||.|-+++.
T Consensus 484 ~vtc~----aFSP~sG~lAv 499 (514)
T KOG2055|consen 484 HVTCM----AFSPNSGYLAV 499 (514)
T ss_pred ceEEE----EecCCCceEEe
Confidence 47777 66776666554
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=5.1e-20 Score=157.71 Aligned_cols=263 Identities=18% Similarity=0.237 Sum_probs=197.3
Q ss_pred EEEEEcCCEEEEeeCCCcEEEEeCCccccc--------cc-------cCccCEEEEEec---------CCEEEEEeCCCe
Q 047728 114 YSLAAAGDLLYTGSDSKNIRVWKNQREFSG--------FK-------SNSGLVKAIVIS---------NEKIFSGHQDGK 169 (474)
Q Consensus 114 ~~~~~~~~~l~tgs~dg~v~vwd~~~~~~~--------~~-------~h~~~V~~i~~~---------~~~l~s~~~dg~ 169 (474)
..++|+|..|++-+.|..+++|++...... +. .....|...+|- ..++++.+.|.-
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP 134 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence 346788999999999999999974421111 11 123445555552 347889999999
Q ss_pred EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC---CeeEEEecCCCCEEEEEECCCcEEE
Q 047728 170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD---AISSLSMSEDQNLLYSASWDKTFKV 246 (474)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~dg~i~i 246 (474)
|++||.-+++.......- .|.+ +..+++|+|||.+|++| ....|++
T Consensus 135 Ih~wdaftG~lraSy~~y------------------------------dh~de~taAhsL~Fs~DGeqlfaG-ykrcirv 183 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAY------------------------------DHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRV 183 (406)
T ss_pred eeeeeccccccccchhhh------------------------------hhHHhhhhheeEEecCCCCeEeec-ccceEEE
Confidence 999999998765432211 1333 34689999999999876 4688999
Q ss_pred EEc-CCcceeee--ee-----ecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEE
Q 047728 247 WRT-SDYKCLES--VI-----AHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALA 316 (474)
Q Consensus 247 wd~-~~~~~~~~--~~-----~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~ 316 (474)
+|+ +.|+.... .. +..+.+.+++|+|.. .++.|+....+-||.-.... +...+.+|.+.|+.++
T Consensus 184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~------pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR------PLQLLGGHGGGVTHLQ 257 (406)
T ss_pred eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC------ceeeecccCCCeeeEE
Confidence 999 44442221 11 235678899999987 89999999998888765444 3667779999999999
Q ss_pred EcCCCCEEEEEcC-CCcEEEeecCcccccceeeeecce-----eeEEEEecCCEEEEEeCCCcEEEEECCC-CceEEEEe
Q 047728 317 ISPDAAIVYCGSS-DGLVNFWERELNLSHGGVLRGHKL-----AILCLVTAGNLVFSGSADMSICIWRRKE-NEHICLSM 389 (474)
Q Consensus 317 ~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~ 389 (474)
|.++|+.|++|.. |-.|.+||++....+...+..|.. -...+.+.+++|++|+.||.|++||++. ++ .+..
T Consensus 258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn--~~sv 335 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN--EVSV 335 (406)
T ss_pred eccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC--cccc
Confidence 9999999999876 668999999987655544544443 2356778899999999999999999987 44 2567
Q ss_pred ecCCccceEEEEEeeCCccccccceEEEEEecCC
Q 047728 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD 423 (474)
Q Consensus 390 ~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D 423 (474)
+..|...|+.++++|--. ++++++..
T Consensus 336 ~~~~sd~vNgvslnP~mp--------ilatssGq 361 (406)
T KOG2919|consen 336 TGNYSDTVNGVSLNPIMP--------ILATSSGQ 361 (406)
T ss_pred cccccccccceecCcccc--------eeeeccCc
Confidence 778999999999999987 88888754
No 162
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.5e-20 Score=157.51 Aligned_cols=262 Identities=14% Similarity=0.133 Sum_probs=180.2
Q ss_pred EEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728 151 VKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM 228 (474)
Q Consensus 151 V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 228 (474)
-.|+.|+ |.+|++|+.||.|.|||+.+.... .++.+|..+|++++|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--------------------------------r~lsaH~~pi~sl~W 73 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--------------------------------RMLSAHVRPITSLCW 73 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh--------------------------------hhhhccccceeEEEe
Confidence 6788888 899999999999999999987532 245569999999999
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeee
Q 047728 229 SEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLL 306 (474)
Q Consensus 229 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (474)
+++|+.|++++.|..|.+||+..|.+++.+. ...+|+...|+|.. .+++.-.+..-.+-++..+.. .........
T Consensus 74 S~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp~d~d~ 150 (405)
T KOG1273|consen 74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLPKDDDG 150 (405)
T ss_pred cCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce--eeccCCCcc
Confidence 9999999999999999999999999988886 47899999999976 444444444444444432111 110111111
Q ss_pred cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee--cceeeEEEEecCCEEEEEeCCCcEEEEECCCC--
Q 047728 307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG--HKLAILCLVTAGNLVFSGSADMSICIWRRKEN-- 382 (474)
Q Consensus 307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~-- 382 (474)
.......+..|++.|+++++|...|.+.+||..+.+........ .....+-++..|+.|+.-+.|..||.|+++.-
T Consensus 151 dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 151 DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDD 230 (405)
T ss_pred ccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcc
Confidence 11222334568999999999999999999999887655333222 22333556778999999999999999998621
Q ss_pred -----ceEEEEeecC--CccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEccCCCCCCCCCcccccccCCC-CC
Q 047728 383 -----EHICLSMLTG--HSGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRVSEQAPPLVSTTQQHPLEGHG-VA 453 (474)
Q Consensus 383 -----~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~ 453 (474)
+......+.. ....-.+++|+.++. |++.++ .-..++||.-..+.. ...+.|.. ..
T Consensus 231 ~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge--------Yv~a~s~~aHaLYIWE~~~GsL-------VKILhG~kgE~ 295 (405)
T KOG1273|consen 231 EGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE--------YVCAGSARAHALYIWEKSIGSL-------VKILHGTKGEE 295 (405)
T ss_pred cCccCCcChhHHHHHHHhhhhhhheeecCCcc--------EEEeccccceeEEEEecCCcce-------eeeecCCchhh
Confidence 1111111111 122456788999988 555554 456799999888743 33344433 23
Q ss_pred CCccccCCC
Q 047728 454 PNSLPYAPS 462 (474)
Q Consensus 454 v~~l~~~p~ 462 (474)
...+.|+|.
T Consensus 296 l~DV~whp~ 304 (405)
T KOG1273|consen 296 LLDVNWHPV 304 (405)
T ss_pred eeecccccc
Confidence 445556653
No 163
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=1.3e-19 Score=155.62 Aligned_cols=281 Identities=17% Similarity=0.233 Sum_probs=200.2
Q ss_pred ccCccCEEEEEec-------CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 145 KSNSGLVKAIVIS-------NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 145 ~~h~~~V~~i~~~-------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
..|..+|..++|+ .+.+++.+.+ .+.+|...........+.-.. .
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D---------------------------~ 86 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYAD---------------------------E 86 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccC---------------------------C
Confidence 4677889999886 3356666555 688888766542221111110 1
Q ss_pred eccCCeeEEEecCC----CCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcc
Q 047728 218 KHFDAISSLSMSED----QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRE 291 (474)
Q Consensus 218 ~h~~~V~~l~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~ 291 (474)
.|......++|+-+ ..++|+|+.-|.|+|.|+.++++...+.+|...|+.+.+.|+. ++++++.|..|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 25556666777652 4578899999999999999999999999999999999999998 99999999999999998
Q ss_pred cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc--------------------------
Q 047728 292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG-------------------------- 345 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-------------------------- 345 (474)
.... .....-..+|...|.++.|++++.+|++++.|..+++|++....-..
T Consensus 167 ~~~C---v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~ 243 (385)
T KOG1034|consen 167 TDVC---VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD 243 (385)
T ss_pred CCeE---EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc
Confidence 6432 22334567899999999999999999999999999999987331110
Q ss_pred -eeeeecceeeEEEEecCCEEEEEeCCCcEEEEECC-CCc-----------eEEEEeecCCccceEEEEEeeC--Ccccc
Q 047728 346 -GVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRK-ENE-----------HICLSMLTGHSGPVKCLAVEKD--DESLS 410 (474)
Q Consensus 346 -~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~-~~~-----------~~~~~~~~~h~~~v~~l~~~~~--~~~~~ 410 (474)
....-|...|-|+.+-|+++++-+-++.|..|... -.+ ...+..+.-....|+-+.|.-| .+
T Consensus 244 fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~--- 320 (385)
T KOG1034|consen 244 FSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK--- 320 (385)
T ss_pred ccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH---
Confidence 01123555566666679999999999999999872 111 1113334444455666665544 45
Q ss_pred ccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728 411 REKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ 471 (474)
Q Consensus 411 ~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~ 471 (474)
+||.|...|.|.+||++..+++.. .+..+.. ....|... +||.||++|+
T Consensus 321 -----~la~gnq~g~v~vwdL~~~ep~~~-ttl~~s~--~~~tVRQ~----sfS~dgs~lv 369 (385)
T KOG1034|consen 321 -----MLALGNQSGKVYVWDLDNNEPPKC-TTLTHSK--SGSTVRQT----SFSRDGSILV 369 (385)
T ss_pred -----HHhhccCCCcEEEEECCCCCCccC-ceEEecc--ccceeeee----eecccCcEEE
Confidence 899999999999999998866521 1222221 22334444 8999999986
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.4e-21 Score=188.93 Aligned_cols=226 Identities=15% Similarity=0.231 Sum_probs=182.1
Q ss_pred EEEEeeCCCcEEEEeCCc--------cccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccC
Q 047728 122 LLYTGSDSKNIRVWKNQR--------EFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLP 190 (474)
Q Consensus 122 ~l~tgs~dg~v~vwd~~~--------~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 190 (474)
+||.|.+||.|.+||..+ .+..+..|.+.|..+.|+ ++.|++|+.||.|.|||+...+...... .
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--~-- 157 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--S-- 157 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--C--
Confidence 699999999999998543 356678899999999998 6799999999999999998854432211 0
Q ss_pred ccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCc--ceeE
Q 047728 191 TFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD--AVNS 267 (474)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~v~~ 267 (474)
..-.+.|.+++|+. ..+.|++++.+|.+.|||++..+.+..+..+.. .+..
T Consensus 158 --------------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~ 211 (1049)
T KOG0307|consen 158 --------------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSV 211 (1049)
T ss_pred --------------------------CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceee
Confidence 11456899999998 567889999999999999999888887766554 4678
Q ss_pred EEecCCC--eEEEeeCCC---cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEEEcCCCcEEEeecCcc
Q 047728 268 IVAGFDG--LVFTGSADG---TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYCGSSDGLVNFWERELN 341 (474)
Q Consensus 268 v~~~~~~--~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~v~d~~~~ 341 (474)
+.|+|+. .+++++.|. .|.+||+|.... ..+.+..|...|.++.|++.+ .+|++++.|+.|.+|+.+++
T Consensus 212 l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-----P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 212 LAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-----PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred eeeCCCCceeeeeecCCCCCceeEeecccccCC-----chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 9999998 777777664 499999986554 456778999999999999955 89999999999999999998
Q ss_pred cccceeeeecceeeEEEEec---CCEEEEEeCCCcEEEEECCCCc
Q 047728 342 LSHGGVLRGHKLAILCLVTA---GNLVFSGSADMSICIWRRKENE 383 (474)
Q Consensus 342 ~~~~~~~~~~~~~v~~~~~~---~~~l~sgs~dg~i~iwd~~~~~ 383 (474)
+.+..+.. ....+..+.+. ...+++++-||.|.||.+.+..
T Consensus 287 Evl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 287 EVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eEeeecCC-CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 77654443 44556555553 4589999999999999997654
No 165
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=1.5e-19 Score=152.51 Aligned_cols=278 Identities=20% Similarity=0.258 Sum_probs=196.1
Q ss_pred eeeeeeeecCcEEEEEEc---CCEEEEeeCC-------CcEEEEeCCccccc-----------cc-cCccCEEEEEec--
Q 047728 102 LIGSLVREEGHIYSLAAA---GDLLYTGSDS-------KNIRVWKNQREFSG-----------FK-SNSGLVKAIVIS-- 157 (474)
Q Consensus 102 ~~~~l~~h~~~i~~~~~~---~~~l~tgs~d-------g~v~vwd~~~~~~~-----------~~-~h~~~V~~i~~~-- 157 (474)
+.+.|+.|.|.|+.++.+ .++|+|+..+ -.+.||...+.+.. +. .+-+.|.|+.|.
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 345677888999999865 6688877552 13679986543322 22 456689999998
Q ss_pred CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC--CCCEE
Q 047728 158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE--DQNLL 235 (474)
Q Consensus 158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l 235 (474)
++.+++-. |..|.+|+++............ .-.+|....++-+|+| +++.+
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss--------------------------~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSS--------------------------ESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeeccc--------------------------ccccccceecccccCCCCccceE
Confidence 44666655 7789999998876531110000 0012666788889999 77777
Q ss_pred EEEECCCcEEEEEcCCcceeeee-eecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccE
Q 047728 236 YSASWDKTFKVWRTSDYKCLESV-IAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAV 312 (474)
Q Consensus 236 ~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 312 (474)
++. .|+++..||+++.++...+ .+|...|..+.|+|+. .|++|+.||.|++||.+..+. +...+.+|...|
T Consensus 188 ~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~-----pv~el~~HsHWv 261 (370)
T KOG1007|consen 188 ATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF-----PVQELPGHSHWV 261 (370)
T ss_pred EEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc-----cccccCCCceEE
Confidence 765 5899999999998887776 4688999999999997 899999999999999986654 678889999999
Q ss_pred EEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeec
Q 047728 313 TALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLT 391 (474)
Q Consensus 313 ~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~ 391 (474)
+++.|+| ..++|++++.|..|.+|....-....++...+...-. -..|..=++=-+..+. +.++.
T Consensus 262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~-----------e~~dseer~kpL~dg~---l~tyd 327 (370)
T KOG1007|consen 262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESES-----------EDEDSEERVKPLQDGQ---LETYD 327 (370)
T ss_pred EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccC-----------cchhhHHhcccccccc---ccccc
Confidence 9999999 4568889999999999976543222222222111000 0001000111122332 56788
Q ss_pred CCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 392 GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 392 ~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
.|...|.+++|+.... |+||+-+.||++.|=++..
T Consensus 328 ehEDSVY~~aWSsadP-------WiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 328 EHEDSVYALAWSSADP-------WIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccceEEEeeccCCC-------eeEEEeccCceEEeecCCh
Confidence 8999999999998877 4899999999999877654
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=3.1e-19 Score=152.95 Aligned_cols=276 Identities=21% Similarity=0.259 Sum_probs=191.0
Q ss_pred EEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEec
Q 047728 152 KAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMS 229 (474)
Q Consensus 152 ~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 229 (474)
..+.|+ |..|++-+.|..+++|++.............. . ..... .-......|...+|-
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~-~-----------~~~~~-------~r~~eg~tvydy~wY 113 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLN-F-----------SKHLS-------YRYQEGETVYDYCWY 113 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccc-c-----------cccee-------EEeccCCEEEEEEee
Confidence 346676 67999999999999999876432211000000 0 00000 001122345555554
Q ss_pred -------CCCCEEEEEECCCcEEEEEcCCcceeeeeee--cCc---ceeEEEecCCCeEEEeeCCCcEEEEEcccCCCce
Q 047728 230 -------EDQNLLYSASWDKTFKVWRTSDYKCLESVIA--HDD---AVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 230 -------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~---~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 297 (474)
|+..++++.+.+.-|++||.-+|+....+.+ |.+ ...+++|+|||.-+.++....|++||+...+...
T Consensus 114 s~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 114 SRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDC 193 (406)
T ss_pred eccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCC
Confidence 5778999999999999999999998777754 333 3467899999955556678999999994333221
Q ss_pred e-ee-eeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEe-CC
Q 047728 298 K-HF-FSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGS-AD 371 (474)
Q Consensus 298 ~-~~-~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs-~d 371 (474)
. .. ......+..+-+.+++|+| +...+++++....+-||.-..... ..++.+|...|+ ++.++|+.|++|+ .|
T Consensus 194 ~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p-l~llggh~gGvThL~~~edGn~lfsGaRk~ 272 (406)
T KOG2919|consen 194 PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP-LQLLGGHGGGVTHLQWCEDGNKLFSGARKD 272 (406)
T ss_pred cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-eeeecccCCCeeeEEeccCcCeecccccCC
Confidence 1 11 1112345577899999999 556999999999988887665544 366778988875 5566899999998 47
Q ss_pred CcEEEEECCCCceEEEEeecCCcc-ceEEEEE--eeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCccccccc
Q 047728 372 MSICIWRRKENEHICLSMLTGHSG-PVKCLAV--EKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLE 448 (474)
Q Consensus 372 g~i~iwd~~~~~~~~~~~~~~h~~-~v~~l~~--~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~ 448 (474)
-.|..||++..... +..+..|.+ .=..|.| .|+++ +|++|+.||.|++||+..... ....+.
T Consensus 273 dkIl~WDiR~~~~p-v~~L~rhv~~TNQRI~FDld~~~~--------~LasG~tdG~V~vwdlk~~gn------~~sv~~ 337 (406)
T KOG2919|consen 273 DKILCWDIRYSRDP-VYALERHVGDTNQRILFDLDPKGE--------ILASGDTDGSVRVWDLKDLGN------EVSVTG 337 (406)
T ss_pred CeEEEEeehhccch-hhhhhhhccCccceEEEecCCCCc--------eeeccCCCccEEEEecCCCCC------cccccc
Confidence 89999999876543 566777765 3334444 56677 999999999999999988422 334456
Q ss_pred CCCCCCCccccCCC
Q 047728 449 GHGVAPNSLPYAPS 462 (474)
Q Consensus 449 ~~~~~v~~l~~~p~ 462 (474)
.++..++.++++|+
T Consensus 338 ~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 338 NYSDTVNGVSLNPI 351 (406)
T ss_pred cccccccceecCcc
Confidence 67888999988886
No 167
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.8e-18 Score=142.71 Aligned_cols=278 Identities=15% Similarity=0.213 Sum_probs=191.8
Q ss_pred EEEEEcCCEEEEeeCCCcEEEEeCC------------ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcc
Q 047728 114 YSLAAAGDLLYTGSDSKNIRVWKNQ------------REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDAS 181 (474)
Q Consensus 114 ~~~~~~~~~l~tgs~dg~v~vwd~~------------~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~ 181 (474)
.+++|.+++|++|..+|.|.+..+. ..+..+++|.++|..++|..+.|++|+. |.|+-|........
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es 94 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEES 94 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhh
Confidence 4577889999999999999999633 2345568999999999999999998886 99999988765432
Q ss_pred eee-eec--ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee
Q 047728 182 IHK-RVG--TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV 258 (474)
Q Consensus 182 ~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 258 (474)
... +.- ..|...+ .-.-..|+++.+.|..+-++.++.|+.++-||+++|+...++
T Consensus 95 ~~~K~lwe~~~P~~~~----------------------~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 95 LATKRLWEVKIPMQVD----------------------AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred ccchhhhhhcCccccC----------------------cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE
Confidence 110 000 0000000 002346889999997777777779999999999999999999
Q ss_pred eecCcceeEEEe-cCCCeEEEeeCCCcEEEEEcccCCCceeeeee---eeeec-ccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728 259 IAHDDAVNSIVA-GFDGLVFTGSADGTVKVWRRELQGKGTKHFFS---QTLLK-QECAVTALAISPDAAIVYCGSSDGLV 333 (474)
Q Consensus 259 ~~~~~~v~~v~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i 333 (474)
++|.+.|.+++- +..+.+++|+.||++|+||.++++........ ..+.. ....|-+++. +..+|++|+ ...+
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~l 229 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKL 229 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCce
Confidence 999999999987 44459999999999999999876542211110 01111 2234555554 566888664 4579
Q ss_pred EEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccc
Q 047728 334 NFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREK 413 (474)
Q Consensus 334 ~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 413 (474)
.+|.++...... ...-...+..+.+..+.+++++..+.|.-|.+..-- ...........+...|+...-.
T Consensus 230 slwhLrsse~t~--vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gvl---~a~ip~~s~~c~s~s~~~~p~k----- 299 (325)
T KOG0649|consen 230 SLWHLRSSESTC--VFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGVL---QANIPVESTACYSASWQTSPIK----- 299 (325)
T ss_pred eEEeccCCCceE--EEecccceeEeeeecceEEEeccccceeeeeeccEE---EEeccCCccceeeecccCCceE-----
Confidence 999999876543 234455677778888999999999999999876432 2233333334555555444321
Q ss_pred eEEEEEecCCCcEEEE
Q 047728 414 RWILYSGSLDKSVKMW 429 (474)
Q Consensus 414 ~~~l~s~s~Dg~i~vw 429 (474)
+|-.++....+.|+
T Consensus 300 --~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 300 --FISIAGFSNKLHIL 313 (325)
T ss_pred --EEEecccceeeeee
Confidence 56566666666665
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=1.7e-19 Score=168.25 Aligned_cols=268 Identities=13% Similarity=0.213 Sum_probs=203.5
Q ss_pred EEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeeccc
Q 047728 114 YSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTL 189 (474)
Q Consensus 114 ~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 189 (474)
.|+.|+|..|+.+..+ .+.+||.+ ..+..+++|.+.|.+++|+ |+++++|+.|..|.+|.-.-....
T Consensus 18 ~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-------- 88 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-------- 88 (1081)
T ss_pred eEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee--------
Confidence 3455678766666544 59999955 5788999999999999998 889999999999999986543221
Q ss_pred CccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEE
Q 047728 190 PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV 269 (474)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~ 269 (474)
-..|.+.|.|+.|+|-.+.|++++-. ..-+|......... . .....+.+.+
T Consensus 89 --------------------------kYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~-kss~R~~~Cs 139 (1081)
T KOG1538|consen 89 --------------------------KYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-H-KSSSRIICCS 139 (1081)
T ss_pred --------------------------eeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-h-hhheeEEEee
Confidence 12399999999999998999998864 47788765543322 1 1245678889
Q ss_pred ecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC-----CEEEEEcCCCcEEEeecCcccc
Q 047728 270 AGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA-----AIVYCGSSDGLVNFWERELNLS 343 (474)
Q Consensus 270 ~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-----~~l~~~~~dg~i~v~d~~~~~~ 343 (474)
|..|| +++.|-.+|+|.+-+..... ........+..++|.+++|+|.. ..+++.....++.+|.+.....
T Consensus 140 WtnDGqylalG~~nGTIsiRNk~gEe----k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I 215 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNKNGEE----KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI 215 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecCCCCc----ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee
Confidence 99999 99999999999998644222 22344455678899999999953 4778888888888888765433
Q ss_pred cceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC
Q 047728 344 HGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD 423 (474)
Q Consensus 344 ~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D 423 (474)
-.....+....+++..++|.+++.|+.|+.+.+|-.+.- .+.++.....+|+.++..|+++ +++.|+.|
T Consensus 216 gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv---rLGTvg~~D~WIWtV~~~PNsQ--------~v~~GCqD 284 (1081)
T KOG1538|consen 216 GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV---RLGTVGEQDSWIWTVQAKPNSQ--------YVVVGCQD 284 (1081)
T ss_pred cccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe---EEeeccccceeEEEEEEccCCc--------eEEEEEcc
Confidence 222222333445566679999999999999999976543 3667777888999999999999 89999999
Q ss_pred CcEEEEEccCC
Q 047728 424 KSVKMWRVSEQ 434 (474)
Q Consensus 424 g~i~vw~~~~~ 434 (474)
|+|..|++-..
T Consensus 285 GTiACyNl~fS 295 (1081)
T KOG1538|consen 285 GTIACYNLIFS 295 (1081)
T ss_pred CeeehhhhHHh
Confidence 99999998543
No 169
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=2.1e-19 Score=167.57 Aligned_cols=266 Identities=15% Similarity=0.151 Sum_probs=201.9
Q ss_pred CCCCCCCCCCCcCccCCCCCCCCCCCCCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCccccccccCc
Q 047728 71 SSSPFSKSPWSTHHVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGFKSNS 148 (474)
Q Consensus 71 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~~~h~ 148 (474)
++..+++-|+.++....+.............++.+|++|++.|+|++++ |+++|+|+.|+.|.+|..+-+-..--.|.
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~ 93 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHN 93 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccC
Confidence 5567788888888877665555445555668899999999999999997 99999999999999998654444445799
Q ss_pred cCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEE
Q 047728 149 GLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL 226 (474)
Q Consensus 149 ~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 226 (474)
+.|.|+.|+ ...|++++-.. .-+|..+........ ....|.++
T Consensus 94 D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~K~k----------------------------------ss~R~~~C 138 (1081)
T KOG1538|consen 94 DAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVSKHK----------------------------------SSSRIICC 138 (1081)
T ss_pred CeeeEeecCchHHHhhhcchhh-ccccChhhhhHHhhh----------------------------------hheeEEEe
Confidence 999999999 66888888663 778987765433211 34568899
Q ss_pred EecCCCCEEEEEECCCcEEEEEcCCcceeeeee---ecCcceeEEEecCCC------eEEEeeCCCcEEEEEcccCCCce
Q 047728 227 SMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI---AHDDAVNSIVAGFDG------LVFTGSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 227 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~v~~~~~~------~l~~~~~dg~i~iwd~~~~~~~~ 297 (474)
+|..||++|+.|-.||+|.+-+- +++....+. +...+|++++|+|.. .+++.....++.++.+....
T Consensus 139 sWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~--- 214 (1081)
T KOG1538|consen 139 SWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ--- 214 (1081)
T ss_pred eecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee---
Confidence 99999999999999999999864 444433343 367899999999864 68888888999998876321
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccccee-eeecceeeEEEEecCCEEEEEeCCCcEEE
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV-LRGHKLAILCLVTAGNLVFSGSADMSICI 376 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~l~sgs~dg~i~i 376 (474)
......-+....|+.+.++|.+++.|+.|+.+.+|..+.- .+... ...|-...+.+.|++++++.|+.||+|-.
T Consensus 215 ----Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv-rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 215 ----IGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV-RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred ----ecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe-EEeeccccceeEEEEEEccCCceEEEEEccCeeeh
Confidence 2222333456789999999999999999999999975432 22111 12344555777899999999999999988
Q ss_pred EECC
Q 047728 377 WRRK 380 (474)
Q Consensus 377 wd~~ 380 (474)
|++-
T Consensus 290 yNl~ 293 (1081)
T KOG1538|consen 290 YNLI 293 (1081)
T ss_pred hhhH
Confidence 8763
No 170
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.3e-20 Score=168.13 Aligned_cols=294 Identities=20% Similarity=0.279 Sum_probs=218.8
Q ss_pred eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcc---ccccccCccCEEEEEec----CCEEEEEeCCCeEE
Q 047728 101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQRE---FSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIR 171 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~---~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~ 171 (474)
.+...|..|.|.|+.+.|+ |+.|++|++|..|.+||+... +....+|...|..-.|- ...|++++.||.++
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 4556788999999999998 999999999999999996543 33345676666655553 45799999999999
Q ss_pred EEecCCCCcce-eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEc
Q 047728 172 VWKVSSKDASI-HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRT 249 (474)
Q Consensus 172 vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~ 249 (474)
+=.+....... .. .+..|.++|..++.-| +...|++++.|+.+.-+|+
T Consensus 213 ~s~i~~t~~~e~t~------------------------------rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dl 262 (559)
T KOG1334|consen 213 VSEILETGYVENTK------------------------------RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDL 262 (559)
T ss_pred eeeeccccceecce------------------------------ecccccCccceeeecCCCCCcccccccccceeeeee
Confidence 98776543322 11 2234999999999999 4567899999999999999
Q ss_pred CCcceeeeee---ecCc---ceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCce-----eeeeee-eeecccccEEEE
Q 047728 250 SDYKCLESVI---AHDD---AVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGT-----KHFFSQ-TLLKQECAVTAL 315 (474)
Q Consensus 250 ~~~~~~~~~~---~~~~---~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~-~~~~~~~~v~~l 315 (474)
+.......+. .+.. ....++..|.+ .+++++.|..+++||.+.-.... ..++.. ......-.|+++
T Consensus 263 r~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl 342 (559)
T KOG1334|consen 263 RQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL 342 (559)
T ss_pred ccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeE
Confidence 8776544432 2333 56778888877 89999999999999987543321 111111 122345579999
Q ss_pred EEcCCCCEEEEEcCCCcEEEeecCcc------------cccceeeeecce--eeEEEE---ecCCEEEEEeCCCcEEEEE
Q 047728 316 AISPDAAIVYCGSSDGLVNFWERELN------------LSHGGVLRGHKL--AILCLV---TAGNLVFSGSADMSICIWR 378 (474)
Q Consensus 316 ~~~~~~~~l~~~~~dg~i~v~d~~~~------------~~~~~~~~~~~~--~v~~~~---~~~~~l~sgs~dg~i~iwd 378 (474)
+|+.++.-|+++..|-.|++|....+ ....+.+++|.. .|-.+. |...|+++|+.-|.|.||+
T Consensus 343 ~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 343 VYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred EecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 99998888888889999999954322 112234667763 344444 4568999999999999999
Q ss_pred CCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 379 RKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 379 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
-.+++. +..+.+-..-|+||.-+|-.. +||++|-|..||||--.+.
T Consensus 423 K~t~ei--i~~MegDr~VVNCLEpHP~~P--------vLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 423 KKTGEI--IRFMEGDRHVVNCLEPHPHLP--------VLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred cchhHH--HHHhhcccceEeccCCCCCCc--------hhhccCCccceeeecCCcc
Confidence 999884 455666666899999999988 9999999999999987443
No 171
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=1.6e-19 Score=161.55 Aligned_cols=205 Identities=17% Similarity=0.159 Sum_probs=162.8
Q ss_pred eeeccCCeeEEEecCCC--CEEEEEECCCcEEEEEcCCc----ceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEE
Q 047728 216 WIKHFDAISSLSMSEDQ--NLLYSASWDKTFKVWRTSDY----KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKV 287 (474)
Q Consensus 216 ~~~h~~~V~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~i 287 (474)
..-+...|++++|+|.. +++++|..-|+|-+||+.+. ..+..+..|..+|.++.|+|.+ .+++.+.||+|++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 34488999999999943 68888999999999999532 3455677899999999999988 9999999999999
Q ss_pred EEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEE--e-cCCE
Q 047728 288 WRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLV--T-AGNL 364 (474)
Q Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~-~~~~ 364 (474)
-|++..... ...........+..+.|+.+...++.+..=|.+.+||+++.......+.-|...|..+. | ...+
T Consensus 262 ~D~~~~i~e----~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 262 QDFEGNISE----EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeecchhhH----HHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 999754321 11222234556778889888888888888789999999988776666667776775555 4 3678
Q ss_pred EEEEeCCCcEEEEECCCCceEE--EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 365 VFSGSADMSICIWRRKENEHIC--LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 365 l~sgs~dg~i~iwd~~~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
|++++.|++.+|||++...... +.....|...|.+..|+|.+. -|+|.+.|..|+|||..
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g--------tl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG--------TLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC--------ceEeeccCCceEEeecc
Confidence 9999999999999997543211 344557999999999999998 79999999999999984
No 172
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.83 E-value=1.1e-20 Score=180.17 Aligned_cols=272 Identities=22% Similarity=0.343 Sum_probs=208.1
Q ss_pred ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728 139 REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW 216 (474)
Q Consensus 139 ~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (474)
+.+..+.+|..+|.|+.|+ +.++++|+.|..++||..++..+.. ..
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA--------------------------------s~ 228 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA--------------------------------SC 228 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc--------------------------------cC
Confidence 3456678999999999998 8899999999999999998887653 34
Q ss_pred eeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc
Q 047728 217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 217 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
.||.+.|+.++.+.+..++++++.|..|++|.+.++.++..+.+|++.|++++|+|-. +.+.||++++||.+....
T Consensus 229 rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~- 304 (1113)
T KOG0644|consen 229 RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPR- 304 (1113)
T ss_pred CCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEecccccccc-
Confidence 5799999999999999999999999999999999999999999999999999999863 788999999999883221
Q ss_pred eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEE
Q 047728 297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICI 376 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~i 376 (474)
...+.........-+.++.|..++..+++++.|+.-..|...........+ ..+...+-...+.+++-.+-.+++
T Consensus 305 -~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~l----if~t~ssd~~~~~~~ar~~~~~~v 379 (1113)
T KOG0644|consen 305 -IYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLL----IFVTRSSDLSSIVVTARNDHRLCV 379 (1113)
T ss_pred -ccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccce----EEEeccccccccceeeeeeeEeee
Confidence 111111122234567778888889999999999998888764321110000 001111111356777778889999
Q ss_pred EECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCc
Q 047728 377 WRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNS 456 (474)
Q Consensus 377 wd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~ 456 (474)
|++.++. ....+.+|...+..+.++|-+.. +..+++.||...|||+-.+.+...+. .+|..-+.+
T Consensus 380 wnl~~g~--l~H~l~ghsd~~yvLd~Hpfn~r-------i~msag~dgst~iwdi~eg~pik~y~------~gh~kl~d~ 444 (1113)
T KOG0644|consen 380 WNLYTGQ--LLHNLMGHSDEVYVLDVHPFNPR-------IAMSAGYDGSTIIWDIWEGIPIKHYF------IGHGKLVDG 444 (1113)
T ss_pred eecccch--hhhhhcccccceeeeeecCCCcH-------hhhhccCCCceEeeecccCCcceeee------cccceeecc
Confidence 9999887 46778899999999999998764 67789999999999999986654332 345433333
Q ss_pred cccCCCCCcCCceee
Q 047728 457 LPYAPSFSSQGRICQ 471 (474)
Q Consensus 457 l~~~p~~s~Dg~~l~ 471 (474)
.||+||+-++
T Consensus 445 -----kFSqdgts~~ 454 (1113)
T KOG0644|consen 445 -----KFSQDGTSIA 454 (1113)
T ss_pred -----ccCCCCceEe
Confidence 7999987654
No 173
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.82 E-value=1.9e-18 Score=171.53 Aligned_cols=294 Identities=19% Similarity=0.298 Sum_probs=199.6
Q ss_pred ceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCcccc---------ccccCccCEEEEEec--CCEEEEEe
Q 047728 100 NVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQREFS---------GFKSNSGLVKAIVIS--NEKIFSGH 165 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~~~~---------~~~~h~~~V~~i~~~--~~~l~s~~ 165 (474)
..++++|..|+..|..++.+ +.+++||+.||+|++|+..+... ++.-....+.++... ++.+|.++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 47899999999999888765 57999999999999999654322 222234556666554 88999999
Q ss_pred CCCeEEEEecCCCCcceeee-ecccCccceeeeeecCCCCeEEEeeeccceeeeccC-CeeEEEecC-CCC-EEEEEECC
Q 047728 166 QDGKIRVWKVSSKDASIHKR-VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD-AISSLSMSE-DQN-LLYSASWD 241 (474)
Q Consensus 166 ~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~~~-~~~-~l~s~s~d 241 (474)
.||.|++.+++......... ..-.+. .. ..+ .|..-+|.. .+. .|+.+...
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n------------------------~~-~~g~vv~m~a~~~~~~S~~lvy~T~~ 1172 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPN------------------------LK-KDGVVVSMHAFTAIVQSHVLVYATDL 1172 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeeccc------------------------cc-CCCceEEeecccccccceeEEEEEec
Confidence 99999999998742111000 000000 00 112 233333333 333 78888889
Q ss_pred CcEEEEEcCCcceeeeeee--cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEc
Q 047728 242 KTFKVWRTSDYKCLESVIA--HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAIS 318 (474)
Q Consensus 242 g~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 318 (474)
+.|..||+++......++. ..+.|++++.+|.+ .+++|+..|.+.+||++.+.. .......+..+++.+..+
T Consensus 1173 ~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~-----i~sw~~P~~~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1173 SRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP-----ILSWEHPARAPIRHVWLC 1247 (1431)
T ss_pred cceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce-----eecccCcccCCcceEEee
Confidence 9999999998776665543 45789999999998 999999999999999996654 233444556788888887
Q ss_pred CC---CCEEEEE-c-CCCcEEEeecCcccccceeeeeccee-------------------e-EEEEecCCEEEEEeCCCc
Q 047728 319 PD---AAIVYCG-S-SDGLVNFWERELNLSHGGVLRGHKLA-------------------I-LCLVTAGNLVFSGSADMS 373 (474)
Q Consensus 319 ~~---~~~l~~~-~-~dg~i~v~d~~~~~~~~~~~~~~~~~-------------------v-~~~~~~~~~l~sgs~dg~ 373 (474)
|- ....+++ . ..+.|.+|++.++.....+......+ + .++.--+..+++|+.|..
T Consensus 1248 ~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~k 1327 (1431)
T KOG1240|consen 1248 PTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMK 1327 (1431)
T ss_pred ccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccc
Confidence 72 2444444 4 46789999998885543333321111 1 222223678999999999
Q ss_pred EEEEECCCCceE--E--------------------------------------------E--------EeecCCccceEE
Q 047728 374 ICIWRRKENEHI--C--------------------------------------------L--------SMLTGHSGPVKC 399 (474)
Q Consensus 374 i~iwd~~~~~~~--~--------------------------------------------~--------~~~~~h~~~v~~ 399 (474)
|+.||....... + . ..-..|..+|++
T Consensus 1328 IR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itd 1407 (1431)
T KOG1240|consen 1328 IRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITD 1407 (1431)
T ss_pred eeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhh
Confidence 999998543321 0 0 001246778888
Q ss_pred EEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728 400 LAVEKDDESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 400 l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
+++...... +|++++.||.|+||.
T Consensus 1408 ma~~~~~q~-------llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1408 MATLKSEQP-------LLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhccCcc-------EEEEecCCCeeeecC
Confidence 887766543 899999999999994
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2e-19 Score=164.98 Aligned_cols=253 Identities=18% Similarity=0.290 Sum_probs=177.2
Q ss_pred ccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc
Q 047728 143 GFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF 220 (474)
Q Consensus 143 ~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 220 (474)
++..|...|.++.|. ...|++++.||+|++|+++.........+ .+.-.|.+|.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~------------------------epi~tfraH~ 344 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDV------------------------EPILTFRAHE 344 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccce------------------------eeeEEEeccc
Confidence 456788888888887 66899999999999999944221111111 1123578899
Q ss_pred CCeeEEEecCCCCEEEEEECCCcEEEEEcCC----------cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEE
Q 047728 221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSD----------YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWR 289 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd 289 (474)
++|.|+++.+++..+++|+-||+|+.|++.. ......+.+|.+.|+.++++... .|++++.||++++|+
T Consensus 345 gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 345 GPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWE 424 (577)
T ss_pred CceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeec
Confidence 9999999999999999999999999996531 12345678999999999999887 999999999999998
Q ss_pred cccCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEEEcCCCcEEEeecCcccccceeee--------ecceeeEEEEe
Q 047728 290 RELQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYCGSSDGLVNFWERELNLSHGGVLR--------GHKLAILCLVT 360 (474)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~--------~~~~~v~~~~~ 360 (474)
...... +........+...++.+-... .+.++...-+.--+++.+.......... ......+...+
T Consensus 425 ~~~~~~-----~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~ 499 (577)
T KOG0642|consen 425 PTEESP-----CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP 499 (577)
T ss_pred cCCcCc-----cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC
Confidence 764332 111112222333444443322 2222222222223333333222111100 01122233445
Q ss_pred cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 361 AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 361 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
...+.+++..|+.|+++|..++. .+.....|...++++++.|++. +|++++.|+.|++|++...
T Consensus 500 ~~~~~~~~hed~~Ir~~dn~~~~--~l~s~~a~~~svtslai~~ng~--------~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 500 TADITFTAHEDRSIRFFDNKTGK--ILHSMVAHKDSVTSLAIDPNGP--------YLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred CCCeeEecccCCceecccccccc--cchheeeccceecceeecCCCc--------eEEeecCCceeehhhccch
Confidence 67899999999999999999988 5677888999999999999999 9999999999999999765
No 175
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.1e-17 Score=163.79 Aligned_cols=286 Identities=18% Similarity=0.296 Sum_probs=193.7
Q ss_pred EEcCCEEEEeeCCCcEEEEeCC--ccccccccC---ccCEEEEEec----CCEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728 117 AAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSN---SGLVKAIVIS----NEKIFSGHQDGKIRVWKVSSKDASIHKRVG 187 (474)
Q Consensus 117 ~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h---~~~V~~i~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 187 (474)
.+-...++++.+.-.|+|||.+ +.+..|..+ ...|+.+.+- ...+++|+.||.||||+--.........+
T Consensus 1073 hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV- 1151 (1387)
T KOG1517|consen 1073 HPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELV- 1151 (1387)
T ss_pred cCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeE-
Confidence 3335678888877789999955 445555443 4568888875 33799999999999997433221100000
Q ss_pred ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee-cCccee
Q 047728 188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA-HDDAVN 266 (474)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~ 266 (474)
..+..-.....+..+.=.-+.|.....+|++++.-..|+|||.....++..+.. ....|+
T Consensus 1152 -------------------Taw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vT 1212 (1387)
T KOG1517|consen 1152 -------------------TAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVT 1212 (1387)
T ss_pred -------------------EeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccce
Confidence 000000111111222224567777666777777789999999998877776644 344566
Q ss_pred EEEecCC-C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc--EEEEEEcCCCC-EEEEEcCCCcEEEeecCcc
Q 047728 267 SIVAGFD-G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA--VTALAISPDAA-IVYCGSSDGLVNFWERELN 341 (474)
Q Consensus 267 ~v~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~ 341 (474)
++..... | .+++|..||.|++||.+..... ........|... |..+.+.+.|- .|++|+.+|.|++||++..
T Consensus 1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPD---SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred eecccccCCceEEEeecCCceEEeecccCCcc---ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 6654333 3 9999999999999999875543 234555666666 99999999765 4999999999999999984
Q ss_pred ccc-ceeeeec-----ceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEe----ecCCccceEEEEEeeCCccccc
Q 047728 342 LSH-GGVLRGH-----KLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM----LTGHSGPVKCLAVEKDDESLSR 411 (474)
Q Consensus 342 ~~~-~~~~~~~-----~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~----~~~h~~~v~~l~~~~~~~~~~~ 411 (474)
... .-....| ....+.++.+...+|+|+. +.|+||++...+.-.+.. +....+.+.|++|+|..-
T Consensus 1290 ~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~---- 1364 (1387)
T KOG1517|consen 1290 SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL---- 1364 (1387)
T ss_pred cccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhH----
Confidence 222 1112222 2344566678899999998 999999997654221111 112345789999999987
Q ss_pred cceEEEEEecCCCcEEEEEccCC
Q 047728 412 EKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 412 ~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
++|.|+.|.+|.||.....
T Consensus 1365 ----llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1365 ----LLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ----hhhhccCCceEEEeecCCc
Confidence 8999999999999998765
No 176
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=5.3e-19 Score=162.25 Aligned_cols=264 Identities=20% Similarity=0.297 Sum_probs=183.0
Q ss_pred eeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC----------ccccccccCccCEEEEEec--CCEEEEEeCCCeE
Q 047728 105 SLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ----------REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKI 170 (474)
Q Consensus 105 ~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~----------~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i 170 (474)
++..|...|..+++. ...|++|+.||++++|+++ +++.+|.+|.++|.|+++. ++.+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 788898888888876 6689999999999999873 3577899999999999997 7799999999999
Q ss_pred EEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC
Q 047728 171 RVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS 250 (474)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 250 (474)
+.|++....-..... -...-.+.+.||++.|+.+++++....|++++.||++++|+..
T Consensus 369 ~~w~~p~n~dp~ds~----------------------dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSY----------------------DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred eeeccCCCCCccccc----------------------CcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence 999987332111000 0001125678899999999999999999999999999999987
Q ss_pred Ccceeeeeee--cCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeee-eeeeeecccccEEEEEEcCCCCEEE
Q 047728 251 DYKCLESVIA--HDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHF-FSQTLLKQECAVTALAISPDAAIVY 325 (474)
Q Consensus 251 ~~~~~~~~~~--~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~ 325 (474)
.... .++.. ..+....+.+-... ..++...-+.-.+++++......... ...........+..+.++|...+.+
T Consensus 427 ~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~ 505 (577)
T KOG0642|consen 427 EESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF 505 (577)
T ss_pred CcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE
Confidence 6555 33322 12233444443322 22222223333333333222110000 0001111224577888999999999
Q ss_pred EEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCc
Q 047728 326 CGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHS 394 (474)
Q Consensus 326 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~ 394 (474)
++..|+.|+++|..++..+. ....|...+ +++.++|-+|++|+.|+.+++|.+.... ++.....|.
T Consensus 506 ~~hed~~Ir~~dn~~~~~l~-s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~--~~~es~~~r 573 (577)
T KOG0642|consen 506 TAHEDRSIRFFDNKTGKILH-SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT--CVLESTAHR 573 (577)
T ss_pred ecccCCceecccccccccch-heeeccceecceeecCCCceEEeecCCceeehhhccchh--eeecccccc
Confidence 99999999999998886653 344566665 4556689999999999999999997765 455555554
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=1.2e-17 Score=141.36 Aligned_cols=248 Identities=16% Similarity=0.193 Sum_probs=177.7
Q ss_pred ccCccCEEEEEecC-------CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 145 KSNSGLVKAIVISN-------EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 145 ~~h~~~V~~i~~~~-------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
..|.-+++.+.|.+ +.|+|++ | .+|+|.+...+.....+.. +.. ..-.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~-L~~----------------------~kns 147 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSV-LNN----------------------NKNS 147 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhh-hcc----------------------Cccc
Confidence 36888999999972 2455443 4 5999999864322111100 000 0112
Q ss_pred eccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcc---eeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcc
Q 047728 218 KHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYK---CLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRE 291 (474)
Q Consensus 218 ~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~ 291 (474)
.+..++++..|+. +.++|.+.+-|-+..|||++++. ....+.+|...|..|+|..++ .+++.+.||.||+||++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 3677999999998 77899999999999999999863 356778999999999999976 89999999999999999
Q ss_pred cCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCC-CcEEEeecCcccccceeeeecceeeEEEEe---cCCEEE
Q 047728 292 LQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSD-GLVNFWERELNLSHGGVLRGHKLAILCLVT---AGNLVF 366 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d-g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~ 366 (474)
....... .-.-.....+...++|++ |-+++++-..| ..|.+.|++........+++|...|..+.+ ....|+
T Consensus 228 ~leHSTI---IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hic 304 (364)
T KOG0290|consen 228 SLEHSTI---IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHIC 304 (364)
T ss_pred ccccceE---EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceee
Confidence 6554221 111122256788899998 55677776555 469999999998888889999999866655 478999
Q ss_pred EEeCCCcEEEEECCCCce----EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEE
Q 047728 367 SGSADMSICIWRRKENEH----ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429 (474)
Q Consensus 367 sgs~dg~i~iwd~~~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw 429 (474)
+++.|..+.|||+...-. -++.... -.+.|+.+.|++.... .++.+. ++.+.+.
T Consensus 305 taGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~D-------wiai~~-~kkleiL 362 (364)
T KOG0290|consen 305 TAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPD-------WIAICF-GKKLEIL 362 (364)
T ss_pred ecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCC-------EEEEEe-cCeeeEE
Confidence 999999999999964321 0122222 4568999999976653 566654 3444443
No 178
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=4.4e-18 Score=150.25 Aligned_cols=285 Identities=19% Similarity=0.210 Sum_probs=200.8
Q ss_pred ccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCccee-eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728 148 SGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIH-KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI 223 (474)
Q Consensus 148 ~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 223 (474)
..+|..+.|. .+.|+||+.|..|++|.++....... ..+. -...+..|..+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~------------------------y~s~Ls~H~~aV 68 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVE------------------------YLSSLSRHTRAV 68 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEE------------------------EeecccCCccee
Confidence 4568888886 33899999999999999987654321 0110 113456699999
Q ss_pred eEEEecCCCCEEEEEECCCcEEEEEcC--------C--------cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEE
Q 047728 224 SSLSMSEDQNLLYSASWDKTFKVWRTS--------D--------YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVK 286 (474)
Q Consensus 224 ~~l~~~~~~~~l~s~s~dg~i~iwd~~--------~--------~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~ 286 (474)
+++.|+|+|.+|++|+.+|.|.+|-.. + ......+.+|...|..++|+|++ .+++++-|..++
T Consensus 69 N~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~ 148 (434)
T KOG1009|consen 69 NVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVR 148 (434)
T ss_pred EEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEE
Confidence 999999999999999999999999765 2 12344567899999999999999 899999999999
Q ss_pred EEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee------------------
Q 047728 287 VWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL------------------ 348 (474)
Q Consensus 287 iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~------------------ 348 (474)
+||+..+. ....+..|...+..++|.|.++++++-+.|...+.+.+..........
T Consensus 149 l~Dv~~G~------l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~r 222 (434)
T KOG1009|consen 149 LWDVHAGQ------LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTR 222 (434)
T ss_pred EEEeccce------eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceee
Confidence 99998765 467788999999999999999999999998877776654332211110
Q ss_pred eecce------eeEEEEecCCEEEEEeC----C-----CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccc----
Q 047728 349 RGHKL------AILCLVTAGNLVFSGSA----D-----MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL---- 409 (474)
Q Consensus 349 ~~~~~------~v~~~~~~~~~l~sgs~----d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~---- 409 (474)
.-|.. .-.+|+|+|.+|++.+. + +..++|+...... +...+..-..++..+.|+|---.+
T Consensus 223 LfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r-P~~~lp~~~k~~lavr~~pVy~elrp~~ 301 (434)
T KOG1009|consen 223 LFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR-PAARLPSPKKPALAVRFSPVYYELRPLS 301 (434)
T ss_pred eeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC-ceeecCCCCcceEEEEeeeeEEEecccc
Confidence 00111 12567788988887642 2 3345666554333 245666666777777777632110
Q ss_pred ------cccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 410 ------SREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 410 ------~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
.-..+.+++.++.| .|.|||.++..+.. ..-.-|=..++.+ +||+||.+|..+|
T Consensus 302 ~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~------~v~nihy~~iTDi----aws~dg~~l~vSS 361 (434)
T KOG1009|consen 302 SEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLA------VVDNIHYSAITDI----AWSDDGSVLLVSS 361 (434)
T ss_pred ccccccccccceEEEEeecc-eEEEeccccccceE------EEeeeeeeeecce----eecCCCcEEEEec
Confidence 11234466677655 69999998864432 1223366778888 8899999888765
No 179
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.5e-16 Score=152.21 Aligned_cols=114 Identities=23% Similarity=0.370 Sum_probs=96.9
Q ss_pred eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC----cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEccc
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD----YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRREL 292 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~ 292 (474)
.|.-.++|.+++|+++++++|..||.|.+|.--. ......+.=|...|.++.|+++| .|++|+..|.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 3666789999999999999999999999996322 12344566689999999999999 999999999999999987
Q ss_pred CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728 293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER 338 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~ 338 (474)
+++ +.+..-.++|..+.++||+...+....|+.|.+...
T Consensus 283 ~~k-------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 283 GKK-------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred CCc-------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 653 455666889999999999999999999999998865
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=4.7e-18 Score=149.46 Aligned_cols=205 Identities=19% Similarity=0.302 Sum_probs=161.1
Q ss_pred eeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCC---------ccccccccCccCEEEEEec---CCEEEEEeCCCe
Q 047728 105 SLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQ---------REFSGFKSNSGLVKAIVIS---NEKIFSGHQDGK 169 (474)
Q Consensus 105 ~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~---------~~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~ 169 (474)
.+.+|+++|..++|+ ...||+||+|.+|.||+.. +.+..+.+|...|--+.|+ .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 356899999998876 6689999999999999743 4567789999999999998 679999999999
Q ss_pred EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728 170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT 249 (474)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~ 249 (474)
|.+|++.+++..... .|.+-|.++.|+.+|.+|++.+.|..|+|||.
T Consensus 156 v~iWnv~tgeali~l---------------------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dp 202 (472)
T KOG0303|consen 156 VSIWNVGTGEALITL---------------------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDP 202 (472)
T ss_pred EEEEeccCCceeeec---------------------------------CCCCeEEEEEeccCCceeeeecccceeEEEcC
Confidence 999999999865322 29999999999999999999999999999999
Q ss_pred CCcceeeeeeecCcc-eeEEEecCCCeEEEee----CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEE
Q 047728 250 SDYKCLESVIAHDDA-VNSIVAGFDGLVFTGS----ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIV 324 (474)
Q Consensus 250 ~~~~~~~~~~~~~~~-v~~v~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 324 (474)
++++.+..-.+|.+. -..+.|..++.+++.+ .+..+-+||....... ...........|.---|+++.+++
T Consensus 203 r~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP----~~~~elDtSnGvl~PFyD~dt~iv 278 (472)
T KOG0303|consen 203 RRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP----IALQELDTSNGVLLPFYDPDTSIV 278 (472)
T ss_pred CCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc----ceeEEeccCCceEEeeecCCCCEE
Confidence 999999888888753 3344566677555544 4678999997654432 222333445566666788888876
Q ss_pred EE-EcCCCcEEEeecCcccccce
Q 047728 325 YC-GSSDGLVNFWERELNLSHGG 346 (474)
Q Consensus 325 ~~-~~~dg~i~v~d~~~~~~~~~ 346 (474)
+. |-.|+.|+.|.+........
T Consensus 279 Yl~GKGD~~IRYyEit~d~P~~h 301 (472)
T KOG0303|consen 279 YLCGKGDSSIRYFEITNEPPFVH 301 (472)
T ss_pred EEEecCCcceEEEEecCCCceeE
Confidence 65 55699999999887654433
No 181
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=3.4e-19 Score=170.14 Aligned_cols=276 Identities=22% Similarity=0.299 Sum_probs=202.9
Q ss_pred ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEe--CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728 100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWK--NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW 173 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw 173 (474)
.+.++.|.+|..+|+|..++ |.+++||++|..|+||. ...++....+|.+.|+.++.+ +-++++++.|..|++|
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 35667889999999999998 99999999999999997 446788899999999999998 4578999999999999
Q ss_pred ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc
Q 047728 174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK 253 (474)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 253 (474)
.+..+..+ .++.+|+++|++|+|+|-. +.+.||++++||.+ ..
T Consensus 260 rl~~~~pv--------------------------------svLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~ 302 (1113)
T KOG0644|consen 260 RLPDGAPV--------------------------------SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LE 302 (1113)
T ss_pred ecCCCchH--------------------------------HHHhccccceeeeccCccc----cCCCCCceEecccc-cc
Confidence 99988764 4567899999999999954 67899999999987 12
Q ss_pred eeeee----e-ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC-CCEEEE
Q 047728 254 CLESV----I-AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD-AAIVYC 326 (474)
Q Consensus 254 ~~~~~----~-~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~ 326 (474)
.+... + ...+.+..+.+-..+ .+++++.|+.-..|.+....- +...+.-+..+.+ ..+.++
T Consensus 303 ~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------------~~~~lif~t~ssd~~~~~~~ 370 (1113)
T KOG0644|consen 303 PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------------RSNLLIFVTRSSDLSSIVVT 370 (1113)
T ss_pred ccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh------------hccceEEEecccccccccee
Confidence 11111 1 123455566666666 899999999999997653221 1111111111111 135555
Q ss_pred EcCCCcEEEeecCcccccceeeeecc--eeeEEEEe-cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEe
Q 047728 327 GSSDGLVNFWERELNLSHGGVLRGHK--LAILCLVT-AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE 403 (474)
Q Consensus 327 ~~~dg~i~v~d~~~~~~~~~~~~~~~--~~v~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~ 403 (474)
+-.+-.+.+|++.++... ....+|. ..++.+.| +.....+++.||.+.|||+-.+.++.... .+ .+.+..-+|+
T Consensus 371 ar~~~~~~vwnl~~g~l~-H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~-~g-h~kl~d~kFS 447 (1113)
T KOG0644|consen 371 ARNDHRLCVWNLYTGQLL-HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF-IG-HGKLVDGKFS 447 (1113)
T ss_pred eeeeeEeeeeecccchhh-hhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee-cc-cceeeccccC
Confidence 666778889999887544 3444554 44566665 56677889999999999998887654443 44 4567788999
Q ss_pred eCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 404 KDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 404 ~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
++|. .++....-|.+.|.....+.
T Consensus 448 qdgt--------s~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 448 QDGT--------SIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred CCCc--------eEecCCCCCceEEeccCCCc
Confidence 9998 67777777888887765543
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=2.7e-17 Score=139.16 Aligned_cols=230 Identities=16% Similarity=0.166 Sum_probs=169.1
Q ss_pred eccCCeeEEEecCCC-----CEEEEEECCCcEEEEEcCCcc----eeeee-----eecCcceeEEEecCCC--eEEEeeC
Q 047728 218 KHFDAISSLSMSEDQ-----NLLYSASWDKTFKVWRTSDYK----CLESV-----IAHDDAVNSIVAGFDG--LVFTGSA 281 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~-----~~l~s~s~dg~i~iwd~~~~~----~~~~~-----~~~~~~v~~v~~~~~~--~l~~~~~ 281 (474)
.|.-+++.+.|.|+. .+|++. +..+++|.+...+ +...+ ..+..++++..|+.-. ++.+.+-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 388899999999975 345554 3569999987422 11112 1345688999998765 8999999
Q ss_pred CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEEEcCCCcEEEeecCcccccceeeee-c-ceeeEEE
Q 047728 282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYCGSSDGLVNFWERELNLSHGGVLRG-H-KLAILCL 358 (474)
Q Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~-~~~v~~~ 358 (474)
|-+..|||++.+.. ......+..|...|..++|...+ +.+++.+.||.+++||++....-.-+... . ..+.+.+
T Consensus 172 DTTCTiWdie~~~~---~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL 248 (364)
T KOG0290|consen 172 DTTCTIWDIETGVS---GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL 248 (364)
T ss_pred cCeEEEEEEeeccc---cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence 99999999987522 22456788999999999999854 58899999999999999876443222222 1 3445666
Q ss_pred Ee---cCCEEEEEeCC-CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 359 VT---AGNLVFSGSAD-MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 359 ~~---~~~~l~sgs~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
++ +-+++|+-..| ..|.|.|++.... .+..+.+|.+.|++++|.|.... .|+|+++|..+.+||+...
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~t-pva~L~~H~a~VNgIaWaPhS~~-------hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCT-PVARLRNHQASVNGIAWAPHSSS-------HICTAGDDCQALIWDLQQM 320 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCc-ceehhhcCcccccceEecCCCCc-------eeeecCCcceEEEEecccc
Confidence 65 46788876655 5799999987654 37899999999999999998875 8999999999999999876
Q ss_pred CCCCCCC-cccccccCCCCCCCccccCCCC
Q 047728 435 APPLVST-TQQHPLEGHGVAPNSLPYAPSF 463 (474)
Q Consensus 435 ~~~~~~~-~~~~~~~~~~~~v~~l~~~p~~ 463 (474)
....... .... .-.+.|+.+.|.+..
T Consensus 321 ~~~~~~dPilay---~a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 321 PRENGEDPILAY---TAGGEVNQIQWSSSQ 347 (364)
T ss_pred cccCCCCchhhh---hccceeeeeeecccC
Confidence 4422111 1111 145679999998764
No 183
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.79 E-value=1.2e-15 Score=148.52 Aligned_cols=284 Identities=29% Similarity=0.508 Sum_probs=210.8
Q ss_pred eeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc---cccccccCc-cCEEEEEe-c--CC-EEEEEeC-CCeEEEE
Q 047728 105 SLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR---EFSGFKSNS-GLVKAIVI-S--NE-KIFSGHQ-DGKIRVW 173 (474)
Q Consensus 105 ~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~---~~~~~~~h~-~~V~~i~~-~--~~-~l~s~~~-dg~i~vw 173 (474)
.+..|...|.++.+. +..++.++.|+.+.+|+... ....+..+. ..+..+.+ . +. .++..+. |+.+++|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567888999998887 77888899999999999553 345555533 36666666 3 44 4555444 9999999
Q ss_pred ecCC-CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-CCcEEEEEcCC
Q 047728 174 KVSS-KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-DKTFKVWRTSD 251 (474)
Q Consensus 174 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~iwd~~~ 251 (474)
++.. .... ..+..|...|.+++|+|++..+++++. |+.+++|++..
T Consensus 140 ~~~~~~~~~--------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 140 DLSTPGKLI--------------------------------RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred EecCCCeEE--------------------------------EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence 9987 2211 233459999999999999998888885 99999999999
Q ss_pred cceeeeeeecCcceeEEEecCCC-eEEEe-eCCCcEEEEEcccCCCceeeeeee-eeecccccEEEEEEcCCCCEEEEEc
Q 047728 252 YKCLESVIAHDDAVNSIVAGFDG-LVFTG-SADGTVKVWRRELQGKGTKHFFSQ-TLLKQECAVTALAISPDAAIVYCGS 328 (474)
Q Consensus 252 ~~~~~~~~~~~~~v~~v~~~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~~~ 328 (474)
+..+..+..|...|.++++.|++ .++++ +.|+.|++||..... ... ....|.... ...|++++..+++++
T Consensus 188 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 260 (466)
T COG2319 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK------LLRSTLSGHSDSV-VSSFSPDGSLLASGS 260 (466)
T ss_pred CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc------EEeeecCCCCcce-eEeECCCCCEEEEec
Confidence 88899999999999999999988 34444 999999999776222 122 455666654 338999999999999
Q ss_pred CCCcEEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728 329 SDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD 406 (474)
Q Consensus 329 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 406 (474)
.|+.+++|+.............|...+.++ .+++..+++++.|+.+.+||..............|...+..+.| ...
T Consensus 261 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 339 (466)
T COG2319 261 SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPD 339 (466)
T ss_pred CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCC
Confidence 999999999987655222225566666554 45578888899999999999887764322223478888999999 433
Q ss_pred -ccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 407 -ESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 407 -~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
.. ++..+..|+.+.+|++....
T Consensus 340 ~~~-------~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 340 GSL-------LVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCE-------EEEeecCCCcEEeeecCCCc
Confidence 31 34444788999999998764
No 184
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=9.9e-18 Score=147.46 Aligned_cols=206 Identities=17% Similarity=0.265 Sum_probs=159.1
Q ss_pred eeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCc-------ceeeeeeecCcceeEEEecCCC--eEEEeeCCCc
Q 047728 215 LWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDY-------KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGT 284 (474)
Q Consensus 215 ~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~ 284 (474)
.+.+|+.+|..++|+| +...||+|++|.+|.||.+-.. +.+..+.+|...|--++|+|.- .|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3467999999999999 6788999999999999998643 4567788999999999999986 8999999999
Q ss_pred EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecce---eeEEEEec
Q 047728 285 VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL---AILCLVTA 361 (474)
Q Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~---~v~~~~~~ 361 (474)
|.+||+.++.. ... ..|..-|.+++|+.+|.+|++.+.|..|+|||.+++..+..- .+|.+ .-.-|--+
T Consensus 156 v~iWnv~tgea------li~-l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 156 VSIWNVGTGEA------LIT-LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLAS 227 (472)
T ss_pred EEEEeccCCce------eee-cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEecc
Confidence 99999987654 222 339999999999999999999999999999999988766443 44543 23445557
Q ss_pred CCEEEEEe---CCCcEEEEECCCCceE-EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 362 GNLVFSGS---ADMSICIWRRKENEHI-CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 362 ~~~l~sgs---~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
+.++-+|- .+..+-+||..+.+.. ....+.. .+.|.-=-|.+|..- +.++|-.|+.||.|.+....+
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~i-------vYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSI-------VYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred CceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCE-------EEEEecCCcceEEEEecCCCc
Confidence 77555554 5789999998765432 2334443 344554556677662 445666899999999987654
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.5e-16 Score=153.77 Aligned_cols=284 Identities=17% Similarity=0.253 Sum_probs=203.4
Q ss_pred ecCcEEE--EEEcCCEEEEeeCCCcEEEEe-CC-----ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCC
Q 047728 109 EEGHIYS--LAAAGDLLYTGSDSKNIRVWK-NQ-----REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSK 178 (474)
Q Consensus 109 h~~~i~~--~~~~~~~l~tgs~dg~v~vwd-~~-----~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~ 178 (474)
|.-.++| ++|+++++|+|..||.|.+|. .+ .....+.-|...|.+++|+ |.+|++|+.+|.+.+|.++++
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 4443455 555699999999999999996 22 2355677899999999998 889999999999999999998
Q ss_pred CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee
Q 047728 179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV 258 (474)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 258 (474)
+... +..-..+|..+.++||+.+.+....|+.|.+....+.+...++
T Consensus 284 ~kqf---------------------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tI 330 (792)
T KOG1963|consen 284 KKQF---------------------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTI 330 (792)
T ss_pred Cccc---------------------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhc
Confidence 7432 2235678999999999999999999999999988666554444
Q ss_pred eec-----------CcceeEEEecCC-CeEEEeeCCCcEEEEEcccCCCceeeeeeeeee-----cccccEEEEEEcCCC
Q 047728 259 IAH-----------DDAVNSIVAGFD-GLVFTGSADGTVKVWRRELQGKGTKHFFSQTLL-----KQECAVTALAISPDA 321 (474)
Q Consensus 259 ~~~-----------~~~v~~v~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~v~~l~~~~~~ 321 (474)
.+- .+-.+.+++.|. +.++..+..|.|.+||+-+............-. .+.-.+++++.+..|
T Consensus 331 sgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g 410 (792)
T KOG1963|consen 331 SGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG 410 (792)
T ss_pred cCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccc
Confidence 331 334567788884 488888999999999987654432211111111 123457888888889
Q ss_pred CEEEEEcC--------CC--cEEEeecCccc----ccceeeeecceee--EEEEe--cCCEEEEEeCCCcEEEEECCCC-
Q 047728 322 AIVYCGSS--------DG--LVNFWERELNL----SHGGVLRGHKLAI--LCLVT--AGNLVFSGSADMSICIWRRKEN- 382 (474)
Q Consensus 322 ~~l~~~~~--------dg--~i~v~d~~~~~----~~~~~~~~~~~~v--~~~~~--~~~~l~sgs~dg~i~iwd~~~~- 382 (474)
.++++.-. || .+++|-..... ....+..+|.... +++.. ....+++++.||.++||-+...
T Consensus 411 s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~ 490 (792)
T KOG1963|consen 411 SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDS 490 (792)
T ss_pred eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccc
Confidence 99988632 33 46678654332 2223445666544 33332 3448999999999999988322
Q ss_pred -------ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 383 -------EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 383 -------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
...|...-.-|..++++++|+.||. +++.+.|++|.+||..+.
T Consensus 491 n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs---------lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 491 NIYKKSSNWTCKAIGSYHKTPITALCFSQDGS---------LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred ccCcCccceEEeeeeccccCcccchhhcCCCc---------EEEEecCCEEEEecCCCh
Confidence 2334444445889999999999997 667778899999999883
No 186
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=152.97 Aligned_cols=216 Identities=17% Similarity=0.228 Sum_probs=152.8
Q ss_pred ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--cc-ccccccCccCEEEEEec----CCEEEEEeCCCeE
Q 047728 100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--RE-FSGFKSNSGLVKAIVIS----NEKIFSGHQDGKI 170 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~-~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i 170 (474)
..+-+.|.||+|.|+|++|+ |.+|++|++|-.+.|||.- +. ...-.+|.+.|.++.|- +..+++|+.|..|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 45567899999999999998 9999999999999999943 33 33457899999999995 5689999999999
Q ss_pred EEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC-CEEEEEECCCcEEEEEc
Q 047728 171 RVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ-NLLYSASWDKTFKVWRT 249 (474)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~iwd~ 249 (474)
+++|++..+.-.... -.......|..|...|..|+..|++ +.+.++++||+|+-+|+
T Consensus 120 ~lfdl~~~~~~~~d~----------------------~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDi 177 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDH----------------------GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDI 177 (758)
T ss_pred EEEeccccccccccc----------------------CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecc
Confidence 999998643211000 0001113456699999999999987 88999999999999999
Q ss_pred CCcce-ee---------eeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCc-----e------------eee
Q 047728 250 SDYKC-LE---------SVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKG-----T------------KHF 300 (474)
Q Consensus 250 ~~~~~-~~---------~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~-----~------------~~~ 300 (474)
+.... -. .+...--...++.++|.. +|++|+.|-..++||.+...+. . ..+
T Consensus 178 REph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf 257 (758)
T KOG1310|consen 178 REPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYF 257 (758)
T ss_pred cCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhee
Confidence 86321 11 111112345788889887 9999999999999995422110 0 000
Q ss_pred eeeeee---c-c---cccEEEEEEcCCCCEEEEEcCCCcEEEee
Q 047728 301 FSQTLL---K-Q---ECAVTALAISPDAAIVYCGSSDGLVNFWE 337 (474)
Q Consensus 301 ~~~~~~---~-~---~~~v~~l~~~~~~~~l~~~~~dg~i~v~d 337 (474)
....+. + . ...++-++|+|+|..|++.-....|+++|
T Consensus 258 ~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfd 301 (758)
T KOG1310|consen 258 SPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFD 301 (758)
T ss_pred cCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEe
Confidence 000110 0 0 11256788999999888877777788887
No 187
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=3.4e-17 Score=143.95 Aligned_cols=287 Identities=16% Similarity=0.178 Sum_probs=205.2
Q ss_pred cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCccee-eeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728 142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIH-KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218 (474)
Q Consensus 142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
+.+.+|.+.|+++.|+ +++|++|+.|-.+++|.++..-.... +.++. .. ..
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~--------------------~~------~~ 103 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV--------------------ME------HP 103 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee--------------------cc------Cc
Confidence 3467899999999998 67999999999999999875422111 11110 00 12
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee--cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA--HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK 295 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~ 295 (474)
|...|.|++|...+..+++|..+++|.+.|+++.+.+..+.. ..+.|+.+..+|.. .+++.+.++.|.+||.+....
T Consensus 104 H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 104 HRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN 183 (609)
T ss_pred cccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence 778999999999999999999999999999999888877643 23589999999876 999999999999999986653
Q ss_pred ceeeeeeeeeecccccEEEEEEcCC-CCEEEEEcCCCcEEEeecCcccccceee---eecce-----eeEEEEecCCEEE
Q 047728 296 GTKHFFSQTLLKQECAVTALAISPD-AAIVYCGSSDGLVNFWERELNLSHGGVL---RGHKL-----AILCLVTAGNLVF 366 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~-----~v~~~~~~~~~l~ 366 (474)
....+ ...........+.|+|. ..+|++.+..+-+.+||++......... .+-.. --.-|+++|+.++
T Consensus 184 ~~~~~---~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m 260 (609)
T KOG4227|consen 184 PISLV---LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM 260 (609)
T ss_pred CCcee---eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh
Confidence 32222 22334556788999995 5678888899999999998764332111 11111 2255777888888
Q ss_pred EEeCCCcEEEEECCCCceEEEEeecCCc-------cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC--
Q 047728 367 SGSADMSICIWRRKENEHICLSMLTGHS-------GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP-- 437 (474)
Q Consensus 367 sgs~dg~i~iwd~~~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~-- 437 (474)
+--....-.+||+-+.+.. +..+. |. ..+.+++|..|. -+++|+.+-.|.+|.+......
T Consensus 261 siRR~~~P~~~D~~S~R~~-V~k~D-~N~~GY~N~~T~KS~~F~~D~---------~v~tGSD~~~i~~WklP~~~ds~G 329 (609)
T KOG4227|consen 261 SIRRGKCPLYFDFISQRCF-VLKSD-HNPNGYCNIKTIKSMTFIDDY---------TVATGSDHWGIHIWKLPRANDSYG 329 (609)
T ss_pred hhhccCCCEEeeeecccce-eEecc-CCCCcceeeeeeeeeeeecce---------eeeccCcccceEEEecCCCccccC
Confidence 8776667778888775532 22222 22 257778888775 4999999999999998653211
Q ss_pred --------------CCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728 438 --------------LVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 438 --------------~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
.........+.||..-++.+ .|+|...+|++
T Consensus 330 ~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV----RF~~H~~~l~S 374 (609)
T KOG4227|consen 330 FTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV----RFSQHNNLLVS 374 (609)
T ss_pred ccccCcchhhCchhheecceeEEEecccccccce----eecCCcceEec
Confidence 12334556788999999988 56666666654
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=5.8e-17 Score=156.18 Aligned_cols=236 Identities=15% Similarity=0.213 Sum_probs=167.2
Q ss_pred ccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcce--eee----eeecCcceeEEEecCCC---eEEEeeCCCcEEEE
Q 047728 219 HFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKC--LES----VIAHDDAVNSIVAGFDG---LVFTGSADGTVKVW 288 (474)
Q Consensus 219 h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~--~~~----~~~~~~~v~~v~~~~~~---~l~~~~~dg~i~iw 288 (474)
-...|.|++|+| +..+++.|+.+|.|.+||++.+.. ... ...|..++..+.|..+. .+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 567899999999 778889999999999999987665 222 23588999999998765 59999999999999
Q ss_pred EcccCCCceeeeeeeeee------cccccEEEEEEcC-CCCEEEEEcCCCcEEEee---cCccc----ccceeeeeccee
Q 047728 289 RRELQGKGTKHFFSQTLL------KQECAVTALAISP-DAAIVYCGSSDGLVNFWE---RELNL----SHGGVLRGHKLA 354 (474)
Q Consensus 289 d~~~~~~~~~~~~~~~~~------~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d---~~~~~----~~~~~~~~~~~~ 354 (474)
+++.........+..... .....+++++|.+ +-..+++|+.+|.|..-+ .+... ........|.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 987544322222222222 3345789999999 567889999999988733 22222 222344566777
Q ss_pred eEEEEec---CCEEEEEeCCCcEEEEECC-CCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728 355 ILCLVTA---GNLVFSGSADMSICIWRRK-ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 355 v~~~~~~---~~~l~sgs~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
+.++..+ .+.+++++ |.+++||... ... ++..+..+...|++++|+|-... +|+++..||.|.+||
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~--Pl~~~~~~~~~v~~vaWSptrpa-------vF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS--PLLSLDSSPDYVTDVAWSPTRPA-------VFATVDGDGNLDIWD 470 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccCCCC--cchhhhhccceeeeeEEcCcCce-------EEEEEcCCCceehhh
Confidence 7777654 44555555 9999999887 333 35677778888999999999875 899999999999999
Q ss_pred ccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728 431 VSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
+......+. .....+....+.+ .++++|++|+.+
T Consensus 471 Ll~~~~~Pv-----~s~~~~~~~l~~~----~~s~~g~~lavG 504 (555)
T KOG1587|consen 471 LLQDDEEPV-----LSQKVCSPALTRV----RWSPNGKLLAVG 504 (555)
T ss_pred hhccccCCc-----cccccccccccee----ecCCCCcEEEEe
Confidence 987644332 1222222222333 667778888754
No 189
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=7.1e-17 Score=158.27 Aligned_cols=279 Identities=19% Similarity=0.249 Sum_probs=187.6
Q ss_pred EEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728 151 VKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM 228 (474)
Q Consensus 151 V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 228 (474)
-..+.++ ...++++...-.|+|||.+.++....+..+.. -...|+.+.+
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~-----------------------------~~t~Vs~l~l 1117 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAF-----------------------------PDTRVSDLEL 1117 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCC-----------------------------CCCccceeee
Confidence 3344454 56788888777899999998876543322211 3456888888
Q ss_pred cC--CCCEEEEEECCCcEEEEEcC-C----cceeeeeeec-------CcceeEEEecCCC-eEEEeeCCCcEEEEEcccC
Q 047728 229 SE--DQNLLYSASWDKTFKVWRTS-D----YKCLESVIAH-------DDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQ 293 (474)
Q Consensus 229 ~~--~~~~l~s~s~dg~i~iwd~~-~----~~~~~~~~~~-------~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~ 293 (474)
-. |..++++|+.||.|+||+-. + .+.+..+.+- .+.-.-+.|.... .|++++.-..|+|||....
T Consensus 1118 iNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E 1197 (1387)
T KOG1517|consen 1118 INEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKE 1197 (1387)
T ss_pred ecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccc
Confidence 65 56789999999999999642 2 2333322221 1111224565544 7888887899999998754
Q ss_pred CCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccc--cceeeeeccee--eEEEEec--CC-EE
Q 047728 294 GKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLS--HGGVLRGHKLA--ILCLVTA--GN-LV 365 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~--v~~~~~~--~~-~l 365 (474)
.. ......+.+..|+++.-+. .|+.+++|..||.|++||.+.... .....+.|... |+.++.+ |- .|
T Consensus 1198 ~~-----~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~el 1272 (1387)
T KOG1517|consen 1198 QV-----VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGEL 1272 (1387)
T ss_pred ee-----EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcce
Confidence 33 2233344566788877655 579999999999999999886644 55566777766 7666553 33 59
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeecCCc--c-ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCc
Q 047728 366 FSGSADMSICIWRRKENEHICLSMLTGHS--G-PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTT 442 (474)
Q Consensus 366 ~sgs~dg~i~iwd~~~~~~~~~~~~~~h~--~-~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~ 442 (474)
++|+.||.|++||++.........+..|. + .++++..+++.. ++|+|+. +.|+||++....... ...
T Consensus 1273 vSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap--------iiAsGs~-q~ikIy~~~G~~l~~-~k~ 1342 (1387)
T KOG1517|consen 1273 VSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP--------IIASGSA-QLIKIYSLSGEQLNI-IKY 1342 (1387)
T ss_pred eeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC--------eeeecCc-ceEEEEecChhhhcc-ccc
Confidence 99999999999999874322233333443 3 599999999998 9999998 999999997543222 112
Q ss_pred ccccccCCCCCCCccccCC------CCCcCCceeecc
Q 047728 443 QQHPLEGHGVAPNSLPYAP------SFSSQGRICQKR 473 (474)
Q Consensus 443 ~~~~~~~~~~~v~~l~~~p------~~s~Dg~~l~~~ 473 (474)
....+....+.+.+++||| +-+.|..+.+++
T Consensus 1343 n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1343 NPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred CcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 2222333445678999998 446666666554
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=1.1e-15 Score=148.86 Aligned_cols=266 Identities=30% Similarity=0.503 Sum_probs=200.4
Q ss_pred cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCC-cceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728 142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKD-ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218 (474)
Q Consensus 142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
.....|...+..+.+. +..++.++.|+.+.+|+..... .... +..
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------------------------------~~~ 106 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS--------------------------------LEG 106 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEE--------------------------------Eec
Confidence 3556788999999998 6678888899999999998875 1111 111
Q ss_pred cc-CCeeEEEe-cCCCC-EEEEEEC-CCcEEEEEcCC-cceeeeeeecCcceeEEEecCCC-eEEEeeC-CCcEEEEEcc
Q 047728 219 HF-DAISSLSM-SEDQN-LLYSASW-DKTFKVWRTSD-YKCLESVIAHDDAVNSIVAGFDG-LVFTGSA-DGTVKVWRRE 291 (474)
Q Consensus 219 h~-~~V~~l~~-~~~~~-~l~s~s~-dg~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~-dg~i~iwd~~ 291 (474)
+. ..+..+.+ .+++. .++..+. |+.+.+||... ......+..|...|..+.+++++ .+++++. |+.+++|+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (466)
T COG2319 107 LHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186 (466)
T ss_pred cCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC
Confidence 11 35666666 77776 5555444 99999999988 78888899999999999999999 7777775 9999999998
Q ss_pred cCCCceeeeeeeeeecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCcccccceeeeeccee-eEEEEecCCEEEEEe
Q 047728 292 LQGKGTKHFFSQTLLKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHGGVLRGHKLA-ILCLVTAGNLVFSGS 369 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~l~sgs 369 (474)
... .......|...|.+++|+|++. .+++++.|+.|++||...+......+.+|... +..+++++.++++++
T Consensus 187 ~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (466)
T COG2319 187 TGK------PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS 260 (466)
T ss_pred CCc------eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEec
Confidence 622 3455556899999999999998 55555999999999888554443245566555 457888888999999
Q ss_pred CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccC
Q 047728 370 ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEG 449 (474)
Q Consensus 370 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~ 449 (474)
.|+.+++|+...... .+..+..|...|.++.|.|++. .+++++.|+.+++|++.......... ...
T Consensus 261 ~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~ 326 (466)
T COG2319 261 SDGTIRLWDLRSSSS-LLRTLSGHSSSVLSVAFSPDGK--------LLASGSSDGTVRLWDLETGKLLSSLT-----LKG 326 (466)
T ss_pred CCCcEEEeeecCCCc-EEEEEecCCccEEEEEECCCCC--------EEEEeeCCCcEEEEEcCCCceEEEee-----ecc
Confidence 999999999987664 2333377899999999999777 67779999999999887763322111 235
Q ss_pred CCCCCCcccc
Q 047728 450 HGVAPNSLPY 459 (474)
Q Consensus 450 ~~~~v~~l~~ 459 (474)
|...+..+.|
T Consensus 327 ~~~~~~~~~~ 336 (466)
T COG2319 327 HEGPVSSLSF 336 (466)
T ss_pred cCCceEEEEE
Confidence 5556666655
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=9.7e-16 Score=144.13 Aligned_cols=269 Identities=11% Similarity=0.188 Sum_probs=168.2
Q ss_pred EEEeeCCCcEEEEeCC--c---cccccccCccCEEEEEec--CCEEEEEe-CCCeEEEEecCC-CCcceeeeecccCccc
Q 047728 123 LYTGSDSKNIRVWKNQ--R---EFSGFKSNSGLVKAIVIS--NEKIFSGH-QDGKIRVWKVSS-KDASIHKRVGTLPTFK 193 (474)
Q Consensus 123 l~tgs~dg~v~vwd~~--~---~~~~~~~h~~~V~~i~~~--~~~l~s~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~ 193 (474)
+++...++.|++|+.. . .+..+. +.+....++++ +++|++++ .++.|.+|+++. +........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~------- 76 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES------- 76 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-------
Confidence 3444678999999963 1 223332 33456677776 66776654 578899999973 221111100
Q ss_pred eeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-CCcEEEEEcCC-cc---eeeeeeecCcceeEE
Q 047728 194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-DKTFKVWRTSD-YK---CLESVIAHDDAVNSI 268 (474)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~iwd~~~-~~---~~~~~~~~~~~v~~v 268 (474)
........++++|++++|++++. ++.|.+|++.+ +. .+..+. +......+
T Consensus 77 ------------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~ 131 (330)
T PRK11028 77 ------------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSA 131 (330)
T ss_pred ------------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEe
Confidence 02224568999999999988874 78999999964 22 222222 23446778
Q ss_pred EecCCC-eE-EEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CCcEEEeecCcc--c-
Q 047728 269 VAGFDG-LV-FTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DGLVNFWERELN--L- 342 (474)
Q Consensus 269 ~~~~~~-~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~--~- 342 (474)
+++|++ .+ ++...++.|.+||+...+....................++|+|++++++++.. ++.|.+|+++.. .
T Consensus 132 ~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 132 NIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred EeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 899998 44 55566799999999753321100000001112345678999999999988876 899999999732 1
Q ss_pred ccceeeeec------c--eeeEEEEecCCEEEEEeC-CCcEEEEECCCCc--eEEEEeecCCccceEEEEEeeCCccccc
Q 047728 343 SHGGVLRGH------K--LAILCLVTAGNLVFSGSA-DMSICIWRRKENE--HICLSMLTGHSGPVKCLAVEKDDESLSR 411 (474)
Q Consensus 343 ~~~~~~~~~------~--~~v~~~~~~~~~l~sgs~-dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 411 (474)
......... . ..-+.++|++++++++.. ++.|.+|++.... ...+...... .....++|+|+++
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~---- 286 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGK---- 286 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCC----
Confidence 111111111 0 112667899999999864 7899999996432 1112222211 2456789999998
Q ss_pred cceEEEEEec-CCCcEEEEEccC
Q 047728 412 EKRWILYSGS-LDKSVKMWRVSE 433 (474)
Q Consensus 412 ~~~~~l~s~s-~Dg~i~vw~~~~ 433 (474)
+|+++. .+++|.+|++..
T Consensus 287 ----~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 287 ----YLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred ----EEEEEEccCCcEEEEEEcC
Confidence 666555 589999999864
No 192
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=1.4e-17 Score=154.78 Aligned_cols=246 Identities=16% Similarity=0.183 Sum_probs=175.1
Q ss_pred EEEecCCEEEE--EeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC
Q 047728 153 AIVISNEKIFS--GHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE 230 (474)
Q Consensus 153 ~i~~~~~~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 230 (474)
.++-++.+++. ++..|.|-||++.....+....+..+ -....|+++.|.|
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l----------------------------~Ngt~vtDl~WdP 637 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL----------------------------FNGTLVTDLHWDP 637 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc----------------------------ccCceeeecccCC
Confidence 33344444443 45678999999986543322111110 1455799999999
Q ss_pred -CCCEEEEEECCCcEEEEEcCCc-------ceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeee
Q 047728 231 -DQNLLYSASWDKTFKVWRTSDY-------KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHF 300 (474)
Q Consensus 231 -~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~ 300 (474)
|...|+++++||.|++|.+..+ .....+..|...|+.+.|+|-- .|++++.|-+|++||++....
T Consensus 638 FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~----- 712 (1012)
T KOG1445|consen 638 FDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL----- 712 (1012)
T ss_pred CChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-----
Confidence 8889999999999999998653 3445678899999999999976 899999999999999987653
Q ss_pred eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee---eecceeeEEEEecCCEEEEEeCC----Cc
Q 047728 301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL---RGHKLAILCLVTAGNLVFSGSAD----MS 373 (474)
Q Consensus 301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~l~sgs~d----g~ 373 (474)
...+.+|.+.|..++|+|+|+.+++.+.||+|++|+.+........- .+..+.-+-+..+|+++++.+.| ..
T Consensus 713 -~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQ 791 (1012)
T KOG1445|consen 713 -YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQ 791 (1012)
T ss_pred -hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhh
Confidence 56788999999999999999999999999999999988775543322 23445557778899998887755 56
Q ss_pred EEEEECCCCceEEEEeecCCccc-eEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCC
Q 047728 374 ICIWRRKENEHICLSMLTGHSGP-VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLV 439 (474)
Q Consensus 374 i~iwd~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~ 439 (474)
|.+||.++-....+.+..-...+ +.--.+.+| ...+|++|-.|..|.+|.+-...+...
T Consensus 792 v~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~D-------s~~lfltGKGD~~v~~yEv~~esPy~l 851 (1012)
T KOG1445|consen 792 VQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYD-------SNVLFLTGKGDRFVNMYEVIYESPYLL 851 (1012)
T ss_pred hhhhhhhhccCCcceeeeecccCccccccccCC-------CceEEEecCCCceEEEEEecCCCceee
Confidence 88888765431112211111111 011112233 334899999999999999987665443
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=1.9e-16 Score=152.62 Aligned_cols=272 Identities=14% Similarity=0.157 Sum_probs=191.6
Q ss_pred CCcEEEEeCCcccc--ccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCC
Q 047728 129 SKNIRVWKNQREFS--GFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPS 203 (474)
Q Consensus 129 dg~v~vwd~~~~~~--~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (474)
++.+.||+...... ..-.-...|.++.|+ +..++.|..+|.|.+||+..+.........
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls---------------- 284 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS---------------- 284 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc----------------
Confidence 34799999665421 122245678999987 779999999999999999987653211111
Q ss_pred CeEEEeeeccceeeeccCCeeEEEecCCC--CEEEEEECCCcEEEEEcCCcce-ee-----eee------ecCcceeEEE
Q 047728 204 NYIEVRRHRNGLWIKHFDAISSLSMSEDQ--NLLYSASWDKTFKVWRTSDYKC-LE-----SVI------AHDDAVNSIV 269 (474)
Q Consensus 204 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~~~-~~-----~~~------~~~~~v~~v~ 269 (474)
..--.|..+|+.+.|..+. .-|++++.||.|+.|+++.... .. ... .....++++.
T Consensus 285 ----------~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~ 354 (555)
T KOG1587|consen 285 ----------ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLK 354 (555)
T ss_pred ----------cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEe
Confidence 0112399999999998744 4499999999999998875432 11 111 1124678889
Q ss_pred ecCCC--eEEEeeCCCcEEEEEcccCCCce--eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc
Q 047728 270 AGFDG--LVFTGSADGTVKVWRRELQGKGT--KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG 345 (474)
Q Consensus 270 ~~~~~--~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~ 345 (474)
|.+.. .+++|+.+|.|.--......... ..........|.++|+++.++|=+..++..+.|.++++|.......+.
T Consensus 355 F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl 434 (555)
T KOG1587|consen 355 FEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL 434 (555)
T ss_pred eccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcc
Confidence 98876 89999999999874432211111 112244667789999999999965544444449999999987443443
Q ss_pred eeeeecceeeEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC
Q 047728 346 GVLRGHKLAILCLVTA---GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL 422 (474)
Q Consensus 346 ~~~~~~~~~v~~~~~~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~ 422 (474)
..+..+...++++.+. ...++++..||.|.|||+......++....-+....+.+.|++.++ +|+.|..
T Consensus 435 ~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~--------~lavGd~ 506 (555)
T KOG1587|consen 435 LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGK--------LLAVGDA 506 (555)
T ss_pred hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCc--------EEEEecC
Confidence 4445555556555443 5688899999999999997665445555555677788889999898 9999999
Q ss_pred CCcEEEEEccCC
Q 047728 423 DKSVKMWRVSEQ 434 (474)
Q Consensus 423 Dg~i~vw~~~~~ 434 (474)
.|.+.+|++...
T Consensus 507 ~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 507 NGTTHILKLSES 518 (555)
T ss_pred CCcEEEEEcCch
Confidence 999999999754
No 194
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=6e-16 Score=132.94 Aligned_cols=205 Identities=14% Similarity=0.103 Sum_probs=159.1
Q ss_pred eecCcEEEEEEc--CCEEEEeeCCCcEEEEeC-----CccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecC-C
Q 047728 108 REEGHIYSLAAA--GDLLYTGSDSKNIRVWKN-----QREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVS-S 177 (474)
Q Consensus 108 ~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~-----~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~-~ 177 (474)
.-.++|+|.+++ +..+|++.....|.||.. -+...+++.|...|++|.|. .+.|++|+.|..-+||... .
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 345789999988 568999999999999962 24678899999999999998 6799999999999999984 3
Q ss_pred CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee--
Q 047728 178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL-- 255 (474)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-- 255 (474)
+..... -++..+...++++.|+|.++.|++|+....|.||-++..+--
T Consensus 88 ~~Wkpt------------------------------lvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 88 GTWKPT------------------------------LVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV 137 (361)
T ss_pred Ceeccc------------------------------eeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh
Confidence 332211 234558899999999999999999999999999987654322
Q ss_pred --eeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC------------ceeeeeeeeeecccccEEEEEEcCC
Q 047728 256 --ESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK------------GTKHFFSQTLLKQECAVTALAISPD 320 (474)
Q Consensus 256 --~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~~~~v~~l~~~~~ 320 (474)
+.-+.+...|.++.|+|++ ++++|+.|+..++|..-.... .....+........+.+..+.|+|+
T Consensus 138 sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred hhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence 1223467789999999999 899999999999996421110 0001112222356788999999999
Q ss_pred CCEEEEEcCCCcEEEeecCccc
Q 047728 321 AAIVYCGSSDGLVNFWERELNL 342 (474)
Q Consensus 321 ~~~l~~~~~dg~i~v~d~~~~~ 342 (474)
|..|+-.+.|..+.+-|.....
T Consensus 218 G~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCEeeEecCCCceEEeecCCCc
Confidence 9999999999999999876664
No 195
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.75 E-value=6.1e-17 Score=135.26 Aligned_cols=280 Identities=16% Similarity=0.182 Sum_probs=184.5
Q ss_pred ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 139 REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 139 ~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
.++..++.|.+.|+++.|. +++|++|..-|.|++|++.+.......+.
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~------------------------------- 53 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRL------------------------------- 53 (323)
T ss_pred CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhh-------------------------------
Confidence 3456677999999999998 78999999999999999998765533221
Q ss_pred eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCC-cEEEEEcc-----
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADG-TVKVWRRE----- 291 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg-~i~iwd~~----- 291 (474)
.|...|+.+.--|+ ..+.+-+.|..+.+|++.-...+. .|.-.++++.|.+-. +...+... .+-.++-+
T Consensus 54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~---i~Si~~nslgFCrfS-l~~~~k~~eqll~yp~rgsde~ 128 (323)
T KOG0322|consen 54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFIS---IHSIVVNSLGFCRFS-LVKKPKNSEQLLEYPSRGSDET 128 (323)
T ss_pred hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEE---Eeeeeccccccccce-eccCCCcchhheecCCcccchh
Confidence 27778888888886 578888999999999987644332 233344444443321 11111111 11111111
Q ss_pred ----cCCCceeeeeeeeeecccccEEEEEEcC-CC--CEEEEEcCCCcEEEeecCcccccce---------eeeecceee
Q 047728 292 ----LQGKGTKHFFSQTLLKQECAVTALAISP-DA--AIVYCGSSDGLVNFWERELNLSHGG---------VLRGHKLAI 355 (474)
Q Consensus 292 ----~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~--~~l~~~~~dg~i~v~d~~~~~~~~~---------~~~~~~~~v 355 (474)
.+................+.+.+..+.- ++ -++++|.++|.+.+||+.++..... -...|..++
T Consensus 129 h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpv 208 (323)
T KOG0322|consen 129 HKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPV 208 (323)
T ss_pred hhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcc
Confidence 0111111111222233445677776544 23 2567888999999999988633222 233677888
Q ss_pred EEEEec--CCEEEEEeCCCcEEEEECCCC--ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728 356 LCLVTA--GNLVFSGSADMSICIWRRKEN--EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431 (474)
Q Consensus 356 ~~~~~~--~~~l~sgs~dg~i~iwd~~~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~ 431 (474)
+++..+ -+.=++|+.+..+..|.+... ....-....-....|..+.+-||++ ++||++.|++||||..
T Consensus 209 lsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K--------IlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 209 LSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK--------ILATAGWDHRIRVYSW 280 (323)
T ss_pred eeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCc--------EEeecccCCcEEEEEe
Confidence 888775 344567788888999988643 2211222333345689999999999 9999999999999999
Q ss_pred cCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728 432 SEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
++. .++..+..|...|+++ +|+||..+++.+
T Consensus 281 rtl-------~pLAVLkyHsagvn~v----Afspd~~lmAaa 311 (323)
T KOG0322|consen 281 RTL-------NPLAVLKYHSAGVNAV----AFSPDCELMAAA 311 (323)
T ss_pred ccC-------CchhhhhhhhcceeEE----EeCCCCchhhhc
Confidence 998 4556778899999999 566665555544
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=7.8e-15 Score=137.99 Aligned_cols=232 Identities=14% Similarity=0.200 Sum_probs=146.3
Q ss_pred CCeeEEEecCCCCEEEEEE-CCCcEEEEEcC-Ccce--eeeeeecCcceeEEEecCCC-eEEEee-CCCcEEEEEcccCC
Q 047728 221 DAISSLSMSEDQNLLYSAS-WDKTFKVWRTS-DYKC--LESVIAHDDAVNSIVAGFDG-LVFTGS-ADGTVKVWRRELQG 294 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~-~~~~--~~~~~~~~~~v~~v~~~~~~-~l~~~~-~dg~i~iwd~~~~~ 294 (474)
.....++++|++++|++++ .++.|.+|++. +++. +.... .......++++|++ .+++++ .++.|.+|++...+
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 4566889999999988765 57889999986 3332 22222 23456789999999 555554 48999999986432
Q ss_pred CceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccccc-------eeeeecceeeEEEEecCCEEE
Q 047728 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHG-------GVLRGHKLAILCLVTAGNLVF 366 (474)
Q Consensus 295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~-------~~~~~~~~~v~~~~~~~~~l~ 366 (474)
.... .... ..+......++++|+++++++++ .++.|.+||+++...+. ....+....-+.+++++++++
T Consensus 114 ~~~~--~~~~-~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly 190 (330)
T PRK11028 114 IPVA--PIQI-IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY 190 (330)
T ss_pred CCCC--ceee-ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEE
Confidence 2111 1111 12234567789999999886555 56899999997632221 111233334478889999998
Q ss_pred EEeC-CCcEEEEECCC--CceEEEEeecCC------ccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEccCCCC
Q 047728 367 SGSA-DMSICIWRRKE--NEHICLSMLTGH------SGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRVSEQAP 436 (474)
Q Consensus 367 sgs~-dg~i~iwd~~~--~~~~~~~~~~~h------~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~~~~ 436 (474)
++.. ++.|.+|++.. ++...+..+..+ ......+.++|+++ +|+++. .++.|.+|++.....
T Consensus 191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~--------~lyv~~~~~~~I~v~~i~~~~~ 262 (330)
T PRK11028 191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR--------HLYACDRTASLISVFSVSEDGS 262 (330)
T ss_pred EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC--------EEEEecCCCCeEEEEEEeCCCC
Confidence 8876 89999999973 333233333221 12234688999998 677764 578999999976422
Q ss_pred CCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728 437 PLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 437 ~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
.. .....+.. ...+..+ .++|||+.|..
T Consensus 263 ~~---~~~~~~~~-~~~p~~~----~~~~dg~~l~v 290 (330)
T PRK11028 263 VL---SFEGHQPT-ETQPRGF----NIDHSGKYLIA 290 (330)
T ss_pred eE---EEeEEEec-cccCCce----EECCCCCEEEE
Confidence 11 11111111 1122333 78889988764
No 197
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.9e-15 Score=124.97 Aligned_cols=232 Identities=18% Similarity=0.236 Sum_probs=170.3
Q ss_pred cCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEE
Q 047728 157 SNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236 (474)
Q Consensus 157 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~ 236 (474)
.+++|++|..+|.|-+..+...........+..+ ....++|..+|..++|.. .+|+
T Consensus 21 ~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~----------------------iv~eqahdgpiy~~~f~d--~~Ll 76 (325)
T KOG0649|consen 21 SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLK----------------------IVPEQAHDGPIYYLAFHD--DFLL 76 (325)
T ss_pred cceEEEEecCCCeEEEEEehhhhccccCCCCCcc----------------------eeeccccCCCeeeeeeeh--hhee
Confidence 4789999999999999988754322111111100 012256999999999983 4677
Q ss_pred EEECCCcEEEEEcCCcce------eeee--eecC-----cceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728 237 SASWDKTFKVWRTSDYKC------LESV--IAHD-----DAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS 302 (474)
Q Consensus 237 s~s~dg~i~iwd~~~~~~------~~~~--~~~~-----~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 302 (474)
+|+ ||.|+-|..+.... +..+ ..|. -.|+++...|.. -++.++.|+.++-||++.+. +.
T Consensus 77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~------i~ 149 (325)
T KOG0649|consen 77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR------IQ 149 (325)
T ss_pred ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE------EE
Confidence 766 59999997654322 1111 1122 357888888776 66666699999999999765 57
Q ss_pred eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccccee--------eeec-ceeeEEEEecCCEEEEEeCCCc
Q 047728 303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV--------LRGH-KLAILCLVTAGNLVFSGSADMS 373 (474)
Q Consensus 303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--------~~~~-~~~v~~~~~~~~~l~sgs~dg~ 373 (474)
..+.+|...|.++.--.....+++|++||++++||.++.+....+ +++| ...+.|+.-+..+|++|+ .-.
T Consensus 150 r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~ 228 (325)
T KOG0649|consen 150 REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPK 228 (325)
T ss_pred EEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCc
Confidence 889999999999999777778889999999999999988665433 2222 245788888999999887 457
Q ss_pred EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 374 ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 374 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
+.+|.++..+..++..+.+ +|..+.|..| .+++++..+.|.-|.+..
T Consensus 229 lslwhLrsse~t~vfpipa---~v~~v~F~~d----------~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFPIPA---RVHLVDFVDD----------CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred eeEEeccCCCceEEEeccc---ceeEeeeecc----------eEEEeccccceeeeeecc
Confidence 9999999998777776665 5777888776 688888888999998764
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1.7e-15 Score=146.98 Aligned_cols=220 Identities=14% Similarity=0.096 Sum_probs=147.0
Q ss_pred eccCCeeEEEecCCCCEEEEEECC---CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEe-eCCCcEEEEEccc
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWD---KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTG-SADGTVKVWRREL 292 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~-~~dg~i~iwd~~~ 292 (474)
.|...+.+.+|+|+++.|+.++.+ ..|++||+.+++... +....+....++|+||+ .|+.+ ..+|.+.||.+..
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence 367789999999999999887754 369999998875422 22222334568999999 56654 4688877775543
Q ss_pred CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC
Q 047728 293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD 371 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d 371 (474)
.... ...+..+...+...+|+|+++.|+..+ .++...+|+++......... .+......++|+|++|+..+.+
T Consensus 280 ~~~~-----~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~~~~~~SpDG~~ia~~~~~ 353 (429)
T PRK01742 280 NGGT-----PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRGYSAQISADGKTLVMINGD 353 (429)
T ss_pred CCCC-----eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCCCCccCCCCCCEEEEEcCC
Confidence 2221 223344556688899999999776554 57888888765432222222 2222345688999999888776
Q ss_pred CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCC
Q 047728 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHG 451 (474)
Q Consensus 372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 451 (474)
+ +.+||+.+++...+. ..+ ....+.|+|+++ +|+.++.++.+.+|.+.... ....+.+..|.
T Consensus 354 ~-i~~~Dl~~g~~~~lt--~~~--~~~~~~~sPdG~--------~i~~~s~~g~~~~l~~~~~~-----G~~~~~l~~~~ 415 (429)
T PRK01742 354 N-VVKQDLTSGSTEVLS--STF--LDESPSISPNGI--------MIIYSSTQGLGKVLQLVSAD-----GRFKARLPGSD 415 (429)
T ss_pred C-EEEEECCCCCeEEec--CCC--CCCCceECCCCC--------EEEEEEcCCCceEEEEEECC-----CCceEEccCCC
Confidence 5 666999887643221 122 235678999999 88988899999998875321 13455666777
Q ss_pred CCCCccccCCC
Q 047728 452 VAPNSLPYAPS 462 (474)
Q Consensus 452 ~~v~~l~~~p~ 462 (474)
+.+..++|+|.
T Consensus 416 g~~~~p~wsp~ 426 (429)
T PRK01742 416 GQVKFPAWSPY 426 (429)
T ss_pred CCCCCcccCCC
Confidence 77777766654
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=5.4e-14 Score=123.37 Aligned_cols=227 Identities=14% Similarity=0.151 Sum_probs=166.3
Q ss_pred cEEEEEEc--CCEEEEeeCCCcEEEEeCCccc--cccccCccCEEEEEecCCEEEEEeCCC--eEEEEecCCCCcceeee
Q 047728 112 HIYSLAAA--GDLLYTGSDSKNIRVWKNQREF--SGFKSNSGLVKAIVISNEKIFSGHQDG--KIRVWKVSSKDASIHKR 185 (474)
Q Consensus 112 ~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~--~~~~~h~~~V~~i~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~ 185 (474)
.+..+.|+ ...|..|+.|| -++|+..... .........|..+-|+...++..+.+. .+++.++.....+....
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~ 85 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF 85 (391)
T ss_pred ceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe
Confidence 45566666 44788899998 6788644322 222234456777788888877666554 37888877665433222
Q ss_pred ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee---cC
Q 047728 186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA---HD 262 (474)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~ 262 (474)
-..+|.++.++. ++|+++-.+. |+|||+++.+.++++.. +.
T Consensus 86 ---------------------------------fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~ 129 (391)
T KOG2110|consen 86 ---------------------------------FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNP 129 (391)
T ss_pred ---------------------------------cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCc
Confidence 345788888864 4677776655 99999999999988865 34
Q ss_pred cceeEEEecCCC-eEEEe--eCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc-EEEeec
Q 047728 263 DAVNSIVAGFDG-LVFTG--SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL-VNFWER 338 (474)
Q Consensus 263 ~~v~~v~~~~~~-~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~-i~v~d~ 338 (474)
..+.++.+++.+ +++.- ...|.|.+||..... ....+..|++.+.+++|+++|.+||++++.|+ |+||.+
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~------~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v 203 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ------PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSV 203 (391)
T ss_pred cceEeeccCCCCceEEecCCCCCceEEEEEcccce------eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEc
Confidence 456666666666 55543 346899999987554 35677799999999999999999999999997 789999
Q ss_pred Ccccccceeeeecc---eeeEEEEecCCEEEEEeCCCcEEEEECCC
Q 047728 339 ELNLSHGGVLRGHK---LAILCLVTAGNLVFSGSADMSICIWRRKE 381 (474)
Q Consensus 339 ~~~~~~~~~~~~~~---~~v~~~~~~~~~l~sgs~dg~i~iwd~~~ 381 (474)
..+..+..+.+|.. ...++|++++++|++.+..++|+||.++.
T Consensus 204 ~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 204 PEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 99988877766654 22367778899999999999999999864
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.6e-16 Score=140.11 Aligned_cols=196 Identities=19% Similarity=0.258 Sum_probs=152.1
Q ss_pred eEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728 224 SSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS 302 (474)
Q Consensus 224 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 302 (474)
.+++|+.+|..|++++.||++|||+..+...+.....|...|.++.|+||+ .|++-+.| ..+||+.+.+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~---- 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR---- 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh----
Confidence 789999999999999999999999988888888888999999999999999 88888999 999999987632111
Q ss_pred eeeecccccEEEEEEcCCC---C--EEEEEcCCCcEEEeecCccc-----ccceeeeec-ceeeEEEEecCCEEEEEeCC
Q 047728 303 QTLLKQECAVTALAISPDA---A--IVYCGSSDGLVNFWERELNL-----SHGGVLRGH-KLAILCLVTAGNLVFSGSAD 371 (474)
Q Consensus 303 ~~~~~~~~~v~~l~~~~~~---~--~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~~-~~~v~~~~~~~~~l~sgs~d 371 (474)
............+.|+.++ . .++.....+.|+.||+.... ...+....+ ....++++.+|++++.|+.|
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 1113334456667777766 2 23333445567776654322 122222333 56678888999999999999
Q ss_pred CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
|.|.|++..+.+.. ...-+.|...|+.+.|+|+.+ ++++.+.|..+.|..+.-
T Consensus 303 GsVai~~~~~lq~~-~~vk~aH~~~VT~ltF~Pdsr--------~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRL-QYVKEAHLGFVTGLTFSPDSR--------YLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeee-EeehhhheeeeeeEEEcCCcC--------cccccccCCceeEEEEee
Confidence 99999999888754 445678999999999999999 899999999999998876
No 201
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.1e-16 Score=135.04 Aligned_cols=194 Identities=15% Similarity=0.225 Sum_probs=153.4
Q ss_pred CEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCC-C--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc-
Q 047728 233 NLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-G--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ- 308 (474)
Q Consensus 233 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~-~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~- 308 (474)
..++++...|.|++||..+++.+..++++...++.+.|..+ + .+.+++.||+|++||+|...+.. ......+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a----~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA----RISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh----heeccCCC
Confidence 56888889999999999999999999999999999998875 3 89999999999999999766532 1222223
Q ss_pred cccEEEEEEcCCCCEEEEEcC----CCcEEEeecCcccc-cceeeeecceeeEEEEe---cCCEEEEEeCCCcEEEEECC
Q 047728 309 ECAVTALAISPDAAIVYCGSS----DGLVNFWERELNLS-HGGVLRGHKLAILCLVT---AGNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 309 ~~~v~~l~~~~~~~~l~~~~~----dg~i~v~d~~~~~~-~~~~~~~~~~~v~~~~~---~~~~l~sgs~dg~i~iwd~~ 380 (474)
..+..+++....++.+++|.. +-.|.+||.+.... +......|...|+++.+ +.++|++|+.||.|.|||+.
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 356778888878889998864 66799999998877 66667788877766554 47899999999999999997
Q ss_pred CCce-EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728 381 ENEH-ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP 437 (474)
Q Consensus 381 ~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~ 437 (474)
.... -.+...-.|...|.++.|..++-. .|.+-+...+..+|+++.+.+.
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~yk-------rI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYK-------RIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcc-------eEEEEEccCceeEEEccCCChh
Confidence 5421 123333457788999999988732 4888889999999999987643
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=1.2e-15 Score=139.39 Aligned_cols=197 Identities=20% Similarity=0.257 Sum_probs=148.7
Q ss_pred CCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc
Q 047728 232 QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC 310 (474)
Q Consensus 232 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 310 (474)
...|+.++.||.+.+.+ +.++....+.+|.+.+.+-.|+||| -|++++.||.|++|..... +..++.....
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-------LRStl~Q~~~ 146 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-------LRSTVVQNEE 146 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-------HHHHHhhcCc
Confidence 45788899999999987 5677788889999999999999999 8999999999999975421 2345566778
Q ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEE
Q 047728 311 AVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENEHICLS 388 (474)
Q Consensus 311 ~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~ 388 (474)
+|.|++|.|+.+.++.+ ..+.+.+=.+.....+ -..+.|.+-+++++++ .+++++|++|-..+|||-.... +.
T Consensus 147 ~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~-i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~---Lf 221 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFC-QGGHISIKPLAANSKI-IRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN---LF 221 (737)
T ss_pred eeEEEEECCCCCceEEe-cCCeEEEeecccccce-eEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc---cc
Confidence 99999999987655544 3345666555544333 3567899999888874 7899999999999999987654 66
Q ss_pred eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCc
Q 047728 389 MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGR 468 (474)
Q Consensus 389 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~ 468 (474)
.-..|..+|++++|.|+ . .++.++. .++| ++.. ..+.| |+-+||+||.
T Consensus 222 ~S~~~ey~ITSva~npd-~--------~~~v~S~-nt~R---~~~p---------------~~GSi----fnlsWS~DGT 269 (737)
T KOG1524|consen 222 TSAAEEYAITSVAFNPE-K--------DYLLWSY-NTAR---FSSP---------------RVGSI----FNLSWSADGT 269 (737)
T ss_pred cCChhccceeeeeeccc-c--------ceeeeee-eeee---ecCC---------------Cccce----EEEEEcCCCc
Confidence 77889999999999999 4 4665554 3444 2221 12223 4458899998
Q ss_pred eeecc
Q 047728 469 ICQKR 473 (474)
Q Consensus 469 ~l~~~ 473 (474)
-++.+
T Consensus 270 Q~a~g 274 (737)
T KOG1524|consen 270 QATCG 274 (737)
T ss_pred eeecc
Confidence 77654
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=4.7e-15 Score=143.88 Aligned_cols=231 Identities=15% Similarity=0.075 Sum_probs=158.7
Q ss_pred CCcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCC---CeEEEEecCCCCcceeeeecccCccceeeeeecCC
Q 047728 129 SKNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQD---GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKP 202 (474)
Q Consensus 129 dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (474)
+..|.+||.. .....+..|...+....|+ +++|+.++.+ ..|++||+.+++......
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~----------------- 245 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS----------------- 245 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-----------------
Confidence 4689999853 3345567788889999998 6678877644 369999998765321110
Q ss_pred CCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEE--EcCCcceeeeeeecCcceeEEEecCCC-eEE-
Q 047728 203 SNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVW--RTSDYKCLESVIAHDDAVNSIVAGFDG-LVF- 277 (474)
Q Consensus 203 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iw--d~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~- 277 (474)
.......++|+||++.|+.++ .+|.+.|| |+.+++ ...+..+...+....|+||+ .|+
T Consensus 246 ----------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f 308 (429)
T PRK01742 246 ----------------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILF 308 (429)
T ss_pred ----------------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEE
Confidence 111233689999999888765 67766555 665555 44555667778899999999 444
Q ss_pred EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE
Q 047728 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC 357 (474)
Q Consensus 278 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~ 357 (474)
+...+|...||++........ .. .+.. ....|+|+++.|+..+.++ +.+||+.++... ............
T Consensus 309 ~s~~~g~~~I~~~~~~~~~~~-----~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-~lt~~~~~~~~~ 378 (429)
T PRK01742 309 TSDRSGSPQVYRMSASGGGAS-----LV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE-VLSSTFLDESPS 378 (429)
T ss_pred EECCCCCceEEEEECCCCCeE-----Ee-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE-EecCCCCCCCce
Confidence 555678999998865433211 11 2222 4578999999998887765 556998776432 121222334467
Q ss_pred EEecCCEEEEEeCCCcEEEEECC--CCceEEEEeecCCccceEEEEEeeC
Q 047728 358 LVTAGNLVFSGSADMSICIWRRK--ENEHICLSMLTGHSGPVKCLAVEKD 405 (474)
Q Consensus 358 ~~~~~~~l~sgs~dg~i~iwd~~--~~~~~~~~~~~~h~~~v~~l~~~~~ 405 (474)
++|+|++|+.++.++.+.+|++. .++ ....+..|.+.+...+|+|-
T Consensus 379 ~sPdG~~i~~~s~~g~~~~l~~~~~~G~--~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 379 ISPNGIMIIYSSTQGLGKVLQLVSADGR--FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEECCCC--ceEEccCCCCCCCCcccCCC
Confidence 89999999999999988888763 333 45677788888999999985
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=6.4e-15 Score=134.82 Aligned_cols=256 Identities=16% Similarity=0.163 Sum_probs=170.4
Q ss_pred eecCcEEEEEEc-CCEEEEeeCCCcEEEEe-CC-ccccccccCccCEE------EEEec----CCEEEEEeCCCeEEEEe
Q 047728 108 REEGHIYSLAAA-GDLLYTGSDSKNIRVWK-NQ-REFSGFKSNSGLVK------AIVIS----NEKIFSGHQDGKIRVWK 174 (474)
Q Consensus 108 ~h~~~i~~~~~~-~~~l~tgs~dg~v~vwd-~~-~~~~~~~~h~~~V~------~i~~~----~~~l~s~~~dg~i~vwd 174 (474)
.|...|.|+.+. ..-++..++|..+.+|. .. .......--..-|. ..... .+.++.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 455566677776 33455556666666664 22 22221111111111 11111 35799999999998876
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC 254 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 254 (474)
-...-. .....|.++|.+-.|+|+|.-|+++++||.|++|. ++|-.
T Consensus 92 k~~rVE---------------------------------~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGML 137 (737)
T KOG1524|consen 92 KSARVE---------------------------------RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGML 137 (737)
T ss_pred ccchhh---------------------------------hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchH
Confidence 433211 11234999999999999999999999999999998 56655
Q ss_pred eeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728 255 LESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL 332 (474)
Q Consensus 255 ~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 332 (474)
..++.....+|+|++|.|+. .+++. .+.+.|=-+.... .......|.+-|.++.|++..+++++|++|-.
T Consensus 138 RStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~------k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k 209 (737)
T KOG1524|consen 138 RSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAANS------KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR 209 (737)
T ss_pred HHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeeccccc------ceeEEeccCcEEEEeecCccccceeecCCcee
Confidence 55565667899999999998 44443 3455554444332 25667889999999999999999999999999
Q ss_pred EEEeecCcccccceeeeecceeeEEEEecC-CEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccc
Q 047728 333 VNFWERELNLSHGGVLRGHKLAILCLVTAG-NLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSR 411 (474)
Q Consensus 333 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 411 (474)
.++||......... ..|.-++++++++. ..++.++ -++++ .-....+.|..++|++||.
T Consensus 210 fKvWD~~G~~Lf~S--~~~ey~ITSva~npd~~~~v~S-~nt~R-------------~~~p~~GSifnlsWS~DGT---- 269 (737)
T KOG1524|consen 210 FKIWDAQGANLFTS--AAEEYAITSVAFNPEKDYLLWS-YNTAR-------------FSSPRVGSIFNLSWSADGT---- 269 (737)
T ss_pred EEeecccCcccccC--Chhccceeeeeeccccceeeee-eeeee-------------ecCCCccceEEEEEcCCCc----
Confidence 99999875544333 34555555555442 4444444 22232 1223567899999999998
Q ss_pred cceEEEEEecCCCcEEEE
Q 047728 412 EKRWILYSGSLDKSVKMW 429 (474)
Q Consensus 412 ~~~~~l~s~s~Dg~i~vw 429 (474)
.++.|...|.+.+=
T Consensus 270 ----Q~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 270 ----QATCGTSTGQLIVA 283 (737)
T ss_pred ----eeeccccCceEEEe
Confidence 78888888876553
No 205
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.2e-15 Score=138.20 Aligned_cols=249 Identities=16% Similarity=0.176 Sum_probs=165.9
Q ss_pred cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 140 EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 140 ~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
....+.+|.+.|+|+.|+ |..|++|+.|-.+.|||.-..+..... -.
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI-------------------------------~T 90 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI-------------------------------ST 90 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee-------------------------------ec
Confidence 345678999999999998 889999999999999998765543322 24
Q ss_pred eccCCeeEEEecC--CCCEEEEEECCCcEEEEEcCC----------cceeeeeeecCcceeEEEecCCC--eEEEeeCCC
Q 047728 218 KHFDAISSLSMSE--DQNLLYSASWDKTFKVWRTSD----------YKCLESVIAHDDAVNSIVAGFDG--LVFTGSADG 283 (474)
Q Consensus 218 ~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg 283 (474)
+|...|.++.|-| +..++++|..|..|+++|+.. .+....+..|...|..|+..|++ .+.+++.||
T Consensus 91 gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG 170 (758)
T KOG1310|consen 91 GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG 170 (758)
T ss_pred ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc
Confidence 5999999999999 567899999999999999974 23344566789999999999988 899999999
Q ss_pred cEEEEEcccCCCceee----eeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE
Q 047728 284 TVKVWRRELQGKGTKH----FFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL 358 (474)
Q Consensus 284 ~i~iwd~~~~~~~~~~----~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~ 358 (474)
+|+-+|++........ .........--...++.++| +..+|++|+.|-..++||.+........-. ....
T Consensus 171 tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~-----~~~~ 245 (758)
T KOG1310|consen 171 TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDG-----TMNT 245 (758)
T ss_pred ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCc-----cccC
Confidence 9999999864332111 01111222234578999999 557899999999999999754322211100 0000
Q ss_pred EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCC
Q 047728 359 VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL 438 (474)
Q Consensus 359 ~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~ 438 (474)
.|- -.++.|+-|.....+.. ...+......++-++|+|+|.. +|++-+.+ .|+++++...+.+.
T Consensus 246 ~pp-------~~~~cv~yf~p~hlkn~-~gn~~~~~~~~t~vtfnpNGtE-------lLvs~~gE-hVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 246 CPP-------KDCRCVRYFSPGHLKNS-QGNLDRYITCCTYVTFNPNGTE-------LLVSWGGE-HVYLFDVNEDKSPT 309 (758)
T ss_pred CCC-------cccchhheecCccccCc-ccccccceeeeEEEEECCCCcE-------EEEeeCCe-EEEEEeecCCCCce
Confidence 100 01122222211100000 0000001123677889999874 66666554 69999999887665
Q ss_pred CC
Q 047728 439 VS 440 (474)
Q Consensus 439 ~~ 440 (474)
.+
T Consensus 310 ~y 311 (758)
T KOG1310|consen 310 PY 311 (758)
T ss_pred ee
Confidence 43
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=1.9e-14 Score=143.75 Aligned_cols=262 Identities=15% Similarity=0.248 Sum_probs=175.5
Q ss_pred EeC-CccccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEee
Q 047728 135 WKN-QREFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRR 210 (474)
Q Consensus 135 wd~-~~~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (474)
|+. +..+..+..|...|..++.+ +.+++||+.||+|++|+...-.......
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~------------------------- 1088 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSA------------------------- 1088 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCccee-------------------------
Confidence 552 34567788899999999887 4689999999999999987543210000
Q ss_pred eccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc--c-----eeeeeeec-CcceeEE-EecCC--C-eEEE
Q 047728 211 HRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY--K-----CLESVIAH-DDAVNSI-VAGFD--G-LVFT 278 (474)
Q Consensus 211 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~--~-----~~~~~~~~-~~~v~~v-~~~~~--~-~l~~ 278 (474)
....+|......+.++...+.++.+|.++.||.|++.++.-. + +....+.+ .+.+..+ ++... . .++.
T Consensus 1089 rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy 1168 (1431)
T KOG1240|consen 1089 RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY 1168 (1431)
T ss_pred eeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE
Confidence 000123335678999999999999999999999999998652 1 11112222 2333333 33322 2 7888
Q ss_pred eeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--E
Q 047728 279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--L 356 (474)
Q Consensus 279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~ 356 (474)
+..-+.|..||++...... ........+.|++++.+|.+.+++.|+..|.+.+||++-+..+.....++...+ +
T Consensus 1169 ~T~~~~iv~~D~r~~~~~w----~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1169 ATDLSRIVSWDTRMRHDAW----RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHV 1244 (1431)
T ss_pred EEeccceEEecchhhhhHH----hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceE
Confidence 8899999999998654321 122334467899999999999999999999999999998877766666666665 3
Q ss_pred EEEe---cCCEEEE-Ee-CCCcEEEEECCCCceEEEEeecCC-c------------------cceEEEEEeeCCcccccc
Q 047728 357 CLVT---AGNLVFS-GS-ADMSICIWRRKENEHICLSMLTGH-S------------------GPVKCLAVEKDDESLSRE 412 (474)
Q Consensus 357 ~~~~---~~~~l~s-gs-~dg~i~iwd~~~~~~~~~~~~~~h-~------------------~~v~~l~~~~~~~~~~~~ 412 (474)
++.+ .....++ ++ ..+.|.+|++.++... .++... . -......+...+.
T Consensus 1245 ~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~--~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~----- 1317 (1431)
T KOG1240|consen 1245 WLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ--TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG----- 1317 (1431)
T ss_pred EeeccCCCCceEEEecccCCCceeeeecccCcce--EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc-----
Confidence 3333 2244444 44 5789999999988532 222211 0 0111122222222
Q ss_pred ceEEEEEecCCCcEEEEEccCCC
Q 047728 413 KRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 413 ~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
++++|+.|..|+.||.....
T Consensus 1318 ---~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1318 ---FLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ---eeeecCCccceeeccCCCcc
Confidence 89999999999999987653
No 207
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.9e-15 Score=136.82 Aligned_cols=275 Identities=16% Similarity=0.219 Sum_probs=196.5
Q ss_pred ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728 141 FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218 (474)
Q Consensus 141 ~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
...+..|.+.|..|.|+ ++.|++|+.|..|.+||+..+.....+. .+
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-------------------------------SG 183 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-------------------------------SG 183 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc-------------------------------cc
Confidence 44577899999999998 8999999999999999999887654332 24
Q ss_pred ccCCeeEEEecC--CCCEEEEEECCCcEEEEEcCCcc-e--eeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcc
Q 047728 219 HFDAISSLSMSE--DQNLLYSASWDKTFKVWRTSDYK-C--LESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRE 291 (474)
Q Consensus 219 h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~-~--~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~ 291 (474)
|...|....|-| +...+++++.||.|++=.+.... + ...+..|.++|.-++.-|+. .|.+++.|+.+.-+|++
T Consensus 184 H~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr 263 (559)
T KOG1334|consen 184 HCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR 263 (559)
T ss_pred cccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeec
Confidence 888887778888 45789999999999987664322 2 34456799999999999988 89999999999999998
Q ss_pred cCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEEEcCCCcEEEeecCccccc------cee-----eeecceeeEEEE
Q 047728 292 LQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYCGSSDGLVNFWERELNLSH------GGV-----LRGHKLAILCLV 359 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~------~~~-----~~~~~~~v~~~~ 359 (474)
.........+........-....++.+|.. ..+++++.|..+++||.+.-... ... .......|.|+.
T Consensus 264 ~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~ 343 (559)
T KOG1334|consen 264 QDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV 343 (559)
T ss_pred cCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE
Confidence 765544333222111112367889999954 58999999999999997643221 111 112234455555
Q ss_pred e--cCCEEEEEeCCCcEEEEECCCCce----------EEE-EeecCCcc--ceEEEEEe-eCCccccccceEEEEEecCC
Q 047728 360 T--AGNLVFSGSADMSICIWRRKENEH----------ICL-SMLTGHSG--PVKCLAVE-KDDESLSREKRWILYSGSLD 423 (474)
Q Consensus 360 ~--~~~~l~sgs~dg~i~iwd~~~~~~----------~~~-~~~~~h~~--~v~~l~~~-~~~~~~~~~~~~~l~s~s~D 423 (474)
+ ++.-|++...|-.|++|.-..+.. ..+ ..+++|.. .|.++-|. |..+ |+++|++=
T Consensus 344 Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE--------yVvSGSDC 415 (559)
T KOG1334|consen 344 YSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE--------YVVSGSDC 415 (559)
T ss_pred ecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc--------eEEecCcc
Confidence 4 566677777788899995532221 112 23678864 57788764 5666 99999999
Q ss_pred CcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728 424 KSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP 461 (474)
Q Consensus 424 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p 461 (474)
|.|.||+-.++ ...+.+.+...-|++|.=||
T Consensus 416 GhIFiW~K~t~-------eii~~MegDr~VVNCLEpHP 446 (559)
T KOG1334|consen 416 GHIFIWDKKTG-------EIIRFMEGDRHVVNCLEPHP 446 (559)
T ss_pred ceEEEEecchh-------HHHHHhhcccceEeccCCCC
Confidence 99999998887 34445555555677776555
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=2.9e-14 Score=122.67 Aligned_cols=229 Identities=12% Similarity=0.107 Sum_probs=172.2
Q ss_pred CccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728 147 NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS 224 (474)
Q Consensus 147 h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 224 (474)
-..+|+|.+|+ ...++.+.....|.||.....+.-.. ..++..|...|+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~-----------------------------~htls~Hd~~vt 59 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP-----------------------------AHTLSEHDKIVT 59 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee-----------------------------ceehhhhCccee
Confidence 45689999998 55899999999999999887763211 134556999999
Q ss_pred EEEecCCCCEEEEEECCCcEEEEEcC-Cc--ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeee
Q 047728 225 SLSMSEDQNLLYSASWDKTFKVWRTS-DY--KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHF 300 (474)
Q Consensus 225 ~l~~~~~~~~l~s~s~dg~i~iwd~~-~~--~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~ 300 (474)
+++|+|..+.|++|+.|..-++|... .+ ++...+..+...++++.|+|.+ .+++|+.-..|.||-++.... -..
T Consensus 60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd--WWV 137 (361)
T KOG1523|consen 60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND--WWV 137 (361)
T ss_pred EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc--eeh
Confidence 99999999999999999999999883 33 4555667789999999999998 999999999999998874332 222
Q ss_pred eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec-----Cccc-------------cccee-eeecceeeEEEEec
Q 047728 301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER-----ELNL-------------SHGGV-LRGHKLAILCLVTA 361 (474)
Q Consensus 301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~-----~~~~-------------~~~~~-~~~~~~~v~~~~~~ 361 (474)
.......+.+.|+++.|+|++-+|++|+.|+..++|.. +... ..... ..+.-..-..|+++
T Consensus 138 sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred hhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence 33445567788999999999999999999999999863 1110 00001 11222334778888
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728 362 GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 362 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
|..|+-.+.|..+.+-|....... +.....-.-+..++.|..+..
T Consensus 218 G~~lawv~Hds~v~~~da~~p~~~-v~~~~~~~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGPSER-VQSVATAQLPLLSVSWISENS 262 (361)
T ss_pred CCEeeEecCCCceEEeecCCCchh-ccchhhccCCceeeEeecCCc
Confidence 999999999999999998766432 223333337788888877664
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=3.2e-15 Score=133.27 Aligned_cols=196 Identities=20% Similarity=0.264 Sum_probs=148.3
Q ss_pred EEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEec
Q 047728 152 KAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMS 229 (474)
Q Consensus 152 ~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 229 (474)
.+++|+ +..|++++.||++|||++........ ...|..+|.++.|+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~--------------------------------e~~~~~eV~DL~FS 195 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE--------------------------------EIAHHAEVKDLDFS 195 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhh--------------------------------hHhhcCccccceeC
Confidence 556665 67999999999999999877654321 23489999999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCcceeeeeee--cCcceeEEEecCCC-----eEEEe-eCCCcEEEEEcccCCCceeeee
Q 047728 230 EDQNLLYSASWDKTFKVWRTSDYKCLESVIA--HDDAVNSIVAGFDG-----LVFTG-SADGTVKVWRRELQGKGTKHFF 301 (474)
Q Consensus 230 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~-----~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 301 (474)
||++.|++.+.| ..+||+++++..+..... .+.....+.|+.++ ++++. ..-+.|+.||+...... ....
T Consensus 196 ~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~ 273 (398)
T KOG0771|consen 196 PDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLR 273 (398)
T ss_pred CCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccc
Confidence 999999999999 899999999977766542 22345556677665 34433 33456777776644332 1111
Q ss_pred eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcEEEEEC
Q 047728 302 SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSICIWRR 379 (474)
Q Consensus 302 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~ 379 (474)
..........|.+++++++|++++.|+.||.|.+++....+......+.|...|+ .|+|+.+++++-+.|.++.+..+
T Consensus 274 ~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 2223334457999999999999999999999999999988888778888988775 56678999999999998888877
Q ss_pred CC
Q 047728 380 KE 381 (474)
Q Consensus 380 ~~ 381 (474)
.-
T Consensus 354 ~v 355 (398)
T KOG0771|consen 354 AV 355 (398)
T ss_pred ee
Confidence 54
No 210
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=5e-13 Score=117.39 Aligned_cols=236 Identities=15% Similarity=0.161 Sum_probs=170.5
Q ss_pred cCcEEEEEEcCCEEEEeeCCCc--EEEEeCCccccccc-cCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeee
Q 047728 110 EGHIYSLAAAGDLLYTGSDSKN--IRVWKNQREFSGFK-SNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRV 186 (474)
Q Consensus 110 ~~~i~~~~~~~~~l~tgs~dg~--v~vwd~~~~~~~~~-~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 186 (474)
.-.|.-+-|+..++|..+.+.. +++.+..+...... .-...|.+|.++.++|+++-.+. |.|||+...+.+.....
T Consensus 46 ~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t 124 (391)
T KOG2110|consen 46 GVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIET 124 (391)
T ss_pred CeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhc
Confidence 3457778899888887766444 78887654322211 24568999999999999988876 99999998776532221
Q ss_pred cccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE--CCCcEEEEEcCCcceeeeeeecCcc
Q 047728 187 GTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS--WDKTFKVWRTSDYKCLESVIAHDDA 264 (474)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~ 264 (474)
+..+...+.++++++.+.+|+.-+ ..|.|.+||+.+.+.+..+..|+++
T Consensus 125 -----------------------------~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~ 175 (391)
T KOG2110|consen 125 -----------------------------TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP 175 (391)
T ss_pred -----------------------------cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc
Confidence 112555677777777777887533 4689999999999999999999999
Q ss_pred eeEEEecCCC-eEEEeeCCCc-EEEEEcccCCCceeeeeeeeeec--ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc
Q 047728 265 VNSIVAGFDG-LVFTGSADGT-VKVWRRELQGKGTKHFFSQTLLK--QECAVTALAISPDAAIVYCGSSDGLVNFWEREL 340 (474)
Q Consensus 265 v~~v~~~~~~-~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~ 340 (474)
+.+++|+++| +|++++..|+ ||||.+..+++. ..+.. ....|.+++|+|++++|++.+..++|++|.++.
T Consensus 176 lAalafs~~G~llATASeKGTVIRVf~v~~G~kl------~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 176 LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL------YEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeEEEECCCCCEEEEeccCceEEEEEEcCCccEe------eeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 9999999999 9999999998 689998765541 11111 145689999999999999999999999998654
Q ss_pred ccccc---------------------------eeee------------ecceeeEEEEe--cCCEEEEEeCCCcEEEEEC
Q 047728 341 NLSHG---------------------------GVLR------------GHKLAILCLVT--AGNLVFSGSADMSICIWRR 379 (474)
Q Consensus 341 ~~~~~---------------------------~~~~------------~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~ 379 (474)
..... ..+. .....+..+.. ...++..++.||.++.|.+
T Consensus 250 ~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l 329 (391)
T KOG2110|consen 250 VSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRL 329 (391)
T ss_pred cccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEc
Confidence 31100 0000 00112233442 4678999999999999988
Q ss_pred CC
Q 047728 380 KE 381 (474)
Q Consensus 380 ~~ 381 (474)
..
T Consensus 330 ~~ 331 (391)
T KOG2110|consen 330 PP 331 (391)
T ss_pred CC
Confidence 54
No 211
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=6.3e-14 Score=122.54 Aligned_cols=299 Identities=16% Similarity=0.217 Sum_probs=181.3
Q ss_pred EEEEEEcCC--EEEEeeCCCcEEEEeCC-cccccccc-CccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCccee-e
Q 047728 113 IYSLAAAGD--LLYTGSDSKNIRVWKNQ-REFSGFKS-NSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIH-K 184 (474)
Q Consensus 113 i~~~~~~~~--~l~tgs~dg~v~vwd~~-~~~~~~~~-h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~-~ 184 (474)
+.-++++.. -+|++..|-.|++|+.. +....++. ....|+|++|. ...|+.|+..| |.+|..+....... .
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~ 179 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNI 179 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccccc
Confidence 344566544 46778889999999844 33444443 34579999997 56788888887 99998875422111 0
Q ss_pred eecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCc
Q 047728 185 RVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDD 263 (474)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~ 263 (474)
.... . .. ...-...+| .+|+++.|++||..+++++ .|..|.|||..++..+.......+
T Consensus 180 ~~~s--~------------~~-----~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg 239 (445)
T KOG2139|consen 180 RMMS--T------------HH-----LQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG 239 (445)
T ss_pred cccc--c------------cc-----hhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence 0000 0 00 000111235 6899999999999999988 567899999999888766645567
Q ss_pred ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc
Q 047728 264 AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL 342 (474)
Q Consensus 264 ~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~ 342 (474)
.+.-+.|+||+ .|+++.-|+..++|+....-. .....-..+.|...+|+|+|++|+.... |.-++|.+....
T Consensus 240 g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt------~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~ 312 (445)
T KOG2139|consen 240 GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT------KERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDG 312 (445)
T ss_pred ceeeEEEcCCCCEEEEecccceeeeehhcccce------ecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecC
Confidence 78899999999 999999999999996543222 1122223448999999999998776554 334444433221
Q ss_pred ccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC
Q 047728 343 SHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL 422 (474)
Q Consensus 343 ~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~ 422 (474)
+...... .++......+-|+..-.. ..--.--.+++.+++|.|.|. +||+.-.
T Consensus 313 ~~~~~~~-----------------~~~~k~~lliaDL~e~ti--~ag~~l~cgeaq~lawDpsGe--------yLav~fK 365 (445)
T KOG2139|consen 313 EDSVFLR-----------------PQSIKRVLLIADLQEVTI--CAGQRLCCGEAQCLAWDPSGE--------YLAVIFK 365 (445)
T ss_pred CCccccC-----------------cccceeeeeeccchhhhh--hcCcccccCccceeeECCCCC--------EEEEEEc
Confidence 1111110 122222233334421110 000011246789999999999 7777543
Q ss_pred CC--------cEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728 423 DK--------SVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ 471 (474)
Q Consensus 423 Dg--------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~ 471 (474)
.+ .|.+||.....+. .......+.+ ....-++|+|.+ .+|++|.
T Consensus 366 g~~~v~~~k~~i~~fdtr~sp~v--els~cg~i~g--e~P~~IsF~pl~-n~g~lLs 417 (445)
T KOG2139|consen 366 GQSFVLLCKLHISRFDTRKSPPV--ELSYCGMIGG--EYPAYISFGPLK-NEGRLLS 417 (445)
T ss_pred CCchhhhhhhhhhhhcccccCce--EEEecccccC--CCCceEEeeecc-cCCcEEE
Confidence 33 3667776554221 1111111222 126778888887 7777765
No 212
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=3.8e-13 Score=123.49 Aligned_cols=194 Identities=17% Similarity=0.240 Sum_probs=132.9
Q ss_pred ccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728 219 HFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 219 h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
....|+|+.|-| +...++++-.+|.+.++|..- ..+-..+ +-...+++ .+......+. ...
T Consensus 218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------~~~~t~p--~~~~~k~~~~f~i~t~ksk-------~~r-- 280 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------VCGATAP--SYQALKDGDQFAILTSKSK-------KTR-- 280 (636)
T ss_pred cccceEEEEEEeCCCceEEEEEecCceEEeeccc------cccCCCC--cccccCCCCeeEEeeeecc-------ccC--
Confidence 347899999999 556777788999999998621 0011111 11112233 2222211110 000
Q ss_pred eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecc--eeeEEEEecCCEEEEEeCCCcE
Q 047728 297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK--LAILCLVTAGNLVFSGSADMSI 374 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~sgs~dg~i 374 (474)
.+..........|..++|+|||++||+.+.||.++|||..+.+.+ ...+..- .-++|++|||+||++|++|.-|
T Consensus 281 ---NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl-g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLV 356 (636)
T KOG2394|consen 281 ---NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL-GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLV 356 (636)
T ss_pred ---CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHH-HHHHhhccceEEEEEcCCccEEEecCCcceE
Confidence 123333444558999999999999999999999999999877554 2333222 3457788899999999999999
Q ss_pred EEEECCCCceEEEEeecCCccceEEEEEeeCCccc-----------------------------ccc-----------ce
Q 047728 375 CIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL-----------------------------SRE-----------KR 414 (474)
Q Consensus 375 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~-----------------------------~~~-----------~~ 414 (474)
.||.+...+ .+..-.+|.++|..|+|.|--... ... -.
T Consensus 357 tVwSf~erR--VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~ 434 (636)
T KOG2394|consen 357 TVWSFEERR--VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVT 434 (636)
T ss_pred EEEEeccce--EEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceE
Confidence 999998877 567888999999999998411000 001 35
Q ss_pred EEEEEecCCCcEEEEEccCCC
Q 047728 415 WILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 415 ~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
+.|.+.+.|-.+.+||+....
T Consensus 435 YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 435 YRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred EEeecccccceEEEEecchhh
Confidence 689999999999999998753
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=4e-13 Score=130.13 Aligned_cols=215 Identities=12% Similarity=0.025 Sum_probs=138.1
Q ss_pred ccCCeeEEEecCCCCEEEEEEC---CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEE-EeeCCC--cEEEEEcc
Q 047728 219 HFDAISSLSMSEDQNLLYSASW---DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF-TGSADG--TVKVWRRE 291 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-~~~~dg--~i~iwd~~ 291 (474)
+...+...+|+|||+.|+..+. +..|.+||+.+++... +....+.+..+.|+||| .|+ +.+.+| .|.+||+.
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 5567899999999999886642 4579999998876432 22233445678999999 454 345555 48888886
Q ss_pred cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-Cc--EEEeecCcccccceeeeecceeeEEEEecCCEEEEE
Q 047728 292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-GL--VNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG 368 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g~--i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg 368 (474)
.+.. ..+..+...+....|+|+++.|+..+.+ +. |.++|+.++....-...+......+++++|++|+..
T Consensus 276 tg~~-------~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 276 SGQI-------RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV 348 (429)
T ss_pred CCCE-------EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 5421 2223334567889999999988776654 44 444566554332111222233457789999998876
Q ss_pred eCC---CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCc---EEEEEccCCCCCCCCCc
Q 047728 369 SAD---MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKS---VKMWRVSEQAPPLVSTT 442 (474)
Q Consensus 369 s~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~---i~vw~~~~~~~~~~~~~ 442 (474)
+.+ ..|.+||+.+++... +... .......|+||++ +|+.++.++. +.++++...
T Consensus 349 ~~~~g~~~I~~~dl~~g~~~~---Lt~~-~~~~~p~~SpDG~--------~i~~~s~~~~~~~l~~~~~~G~-------- 408 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGGVQV---LTDT-FLDETPSIAPNGT--------MVIYSSSQGMGSVLNLVSTDGR-------- 408 (429)
T ss_pred EccCCCceEEEEECCCCCeEE---eCCC-CCCCCceECCCCC--------EEEEEEcCCCceEEEEEECCCC--------
Confidence 543 358889998876432 2221 2234678999999 7777777764 566666432
Q ss_pred ccccccCCCCCCCccccCC
Q 047728 443 QQHPLEGHGVAPNSLPYAP 461 (474)
Q Consensus 443 ~~~~~~~~~~~v~~l~~~p 461 (474)
....+.+|.+.+...+|+|
T Consensus 409 ~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 409 FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CeEECccCCCCcCCcccCC
Confidence 3344566777777766655
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.1e-13 Score=126.12 Aligned_cols=283 Identities=16% Similarity=0.172 Sum_probs=197.4
Q ss_pred eecCcEEE--EEEcCCE-EEEeeCCCcEEEEeCCccccccccCcc--CEEEEEecCC--EEEEEeCCCeEEEEecCCCCc
Q 047728 108 REEGHIYS--LAAAGDL-LYTGSDSKNIRVWKNQREFSGFKSNSG--LVKAIVISNE--KIFSGHQDGKIRVWKVSSKDA 180 (474)
Q Consensus 108 ~h~~~i~~--~~~~~~~-l~tgs~dg~v~vwd~~~~~~~~~~h~~--~V~~i~~~~~--~l~s~~~dg~i~vwd~~~~~~ 180 (474)
+|....+. ++++|+| +|||...-.|++||+.+.-..|..|.. .|.-...+.+ .++.-..|.+|.+-.--..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~-- 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR-- 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe--
Confidence 34444444 5567885 678888999999998887777777743 3444444443 2444445555544221110
Q ss_pred ceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee
Q 047728 181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA 260 (474)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 260 (474)
+... .-...-.+++++.-.--|+.++....|+-++++.|..+..+..
T Consensus 127 --hy~~-------------------------------RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 127 --HYRT-------------------------------RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred --eeee-------------------------------ecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc
Confidence 0000 0112234566665333355555567799999999999999988
Q ss_pred cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc-----cEEEEEEcCCCCEEEEEcCCCcEE
Q 047728 261 HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC-----AVTALAISPDAAIVYCGSSDGLVN 334 (474)
Q Consensus 261 ~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~l~~~~~dg~i~ 334 (474)
..+.++++..++.. +|++|+.+|.|..||.+................+.+ .|+++.|+.+|-.+++|+.+|.+.
T Consensus 174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~ 253 (703)
T KOG2321|consen 174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVL 253 (703)
T ss_pred ccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEE
Confidence 88999999999876 889999999999999987665444433333333333 499999999999999999999999
Q ss_pred EeecCcccccceeeeecceeeEEEEec----CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcccc
Q 047728 335 FWERELNLSHGGVLRGHKLAILCLVTA----GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLS 410 (474)
Q Consensus 335 v~d~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 410 (474)
|||++....+...-.+...++..+.+. ++.+++. ....++|||-.+++.. ..+. ....++.+|+.|+..
T Consensus 254 iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~--asiE-pt~~lND~C~~p~sG--- 326 (703)
T KOG2321|consen 254 IYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPM--ASIE-PTSDLNDFCFVPGSG--- 326 (703)
T ss_pred EEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCce--eecc-ccCCcCceeeecCCc---
Confidence 999999887766556666777777762 3444444 4578999999998843 3333 445699999999998
Q ss_pred ccceEEEEEecCCCcEEEEEccCCCCC
Q 047728 411 REKRWILYSGSLDKSVKMWRVSEQAPP 437 (474)
Q Consensus 411 ~~~~~~l~s~s~Dg~i~vw~~~~~~~~ 437 (474)
+++++-.++.+..|=+....+.
T Consensus 327 -----m~f~Ane~~~m~~yyiP~LGPa 348 (703)
T KOG2321|consen 327 -----MFFTANESSKMHTYYIPSLGPA 348 (703)
T ss_pred -----eEEEecCCCcceeEEccccCCC
Confidence 8999999998888877765443
No 215
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=5.5e-14 Score=124.14 Aligned_cols=261 Identities=13% Similarity=0.130 Sum_probs=183.7
Q ss_pred ecCcEEEEEEc----CCEEEEeeCCCcEEEEeCCcc--------ccccccCccCEEEEEecCCEEEEEeCCCeEEEEecC
Q 047728 109 EEGHIYSLAAA----GDLLYTGSDSKNIRVWKNQRE--------FSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVS 176 (474)
Q Consensus 109 h~~~i~~~~~~----~~~l~tgs~dg~v~vwd~~~~--------~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~ 176 (474)
....|.+++|. .+.|...+.+..+..+..+.. ........+.|..+...+..|++|-.+|.+.+|...
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence 34445555554 335555545656666553321 223345577888888889999999999999999998
Q ss_pred CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECC--CcEEEEEcCCcc
Q 047728 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWD--KTFKVWRTSDYK 253 (474)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~d--g~i~iwd~~~~~ 253 (474)
.+....... ........+..+.-++. ..++++|+.. ..+.|||++..+
T Consensus 134 ~~d~hss~l-----------------------------~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~ 184 (412)
T KOG3881|consen 134 SGDLHSSKL-----------------------------IKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK 184 (412)
T ss_pred CCccccccc-----------------------------eeeecCCceeeeccCCCCCceEecCchhcccceeeeecccce
Confidence 665321100 00112234555555663 4456668888 889999999886
Q ss_pred eeeeeeec---------CcceeEEEecCC--C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC
Q 047728 254 CLESVIAH---------DDAVNSIVAGFD--G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA 321 (474)
Q Consensus 254 ~~~~~~~~---------~~~v~~v~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 321 (474)
.+.+-+.- .-.++++.|.+. . .|++++.-+.|++||.+.+.+ +...+.-.+.+++++...|.+
T Consensus 185 qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-----PV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 185 QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-----PVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-----ceeEeccccCcceeeeecCCC
Confidence 65544321 124567778777 4 899999999999999986655 455566668899999999999
Q ss_pred CEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEE
Q 047728 322 AIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKC 399 (474)
Q Consensus 322 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~ 399 (474)
+++++|..-+.+..||++.+......+.+..+.+..+.. ...++++++-|..|||+|+.+.+.. ... --...+++
T Consensus 260 n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll--~kv-YvKs~lt~ 336 (412)
T KOG3881|consen 260 NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL--HKV-YVKSRLTF 336 (412)
T ss_pred cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh--hhh-hhhccccE
Confidence 999999999999999999998887778888888877765 4569999999999999999986532 111 12244666
Q ss_pred EEEeeCC
Q 047728 400 LAVEKDD 406 (474)
Q Consensus 400 l~~~~~~ 406 (474)
+-+.++-
T Consensus 337 il~~~~~ 343 (412)
T KOG3881|consen 337 ILLRDDV 343 (412)
T ss_pred EEecCCc
Confidence 6665543
No 216
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.60 E-value=1.9e-13 Score=118.75 Aligned_cols=275 Identities=14% Similarity=0.153 Sum_probs=175.2
Q ss_pred eeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc-------cccccccCc------------cCEEEEEec----CCEE
Q 047728 107 VREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR-------EFSGFKSNS------------GLVKAIVIS----NEKI 161 (474)
Q Consensus 107 ~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~-------~~~~~~~h~------------~~V~~i~~~----~~~l 161 (474)
.....-|.++.|+ |++||||..+|.|.++...+ ....++.|. ..|..+.|. ...+
T Consensus 22 vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 22 VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred echhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 3445668888887 99999999999999996322 223344443 467788886 3467
Q ss_pred EEEeCCCeEEEEecCCCCcceee----eecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728 162 FSGHQDGKIRVWKVSSKDASIHK----RVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS 237 (474)
Q Consensus 162 ~s~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 237 (474)
+....|.+|++|.+......... ..........+-.....+.........+...-..|+--|++|.++.|+..+++
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 88889999999998765433200 00000011111111111222222222222233568899999999999999888
Q ss_pred EECCCcEEEEEcCCcceee---eeeec-----CcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeee-----
Q 047728 238 ASWDKTFKVWRTSDYKCLE---SVIAH-----DDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFS----- 302 (474)
Q Consensus 238 ~s~dg~i~iwd~~~~~~~~---~~~~~-----~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~----- 302 (474)
+ .|=.|.+|+++--..-. .++.+ ..-|++..|+|.. .++..+..|+|++.|++...........
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 7 47789999886432221 12222 3457888899986 8889999999999999843321111000
Q ss_pred -----eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecc-----------------eeeEEEEe
Q 047728 303 -----QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK-----------------LAILCLVT 360 (474)
Q Consensus 303 -----~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-----------------~~v~~~~~ 360 (474)
..+..--..|..+.|+++|+++++-.. -+|++||+...........-|. ..-.+++-
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 011122356889999999999986543 5899999976655545544442 11144555
Q ss_pred cCCEEEEEeCCCcEEEEECCCCc
Q 047728 361 AGNLVFSGSADMSICIWRRKENE 383 (474)
Q Consensus 361 ~~~~l~sgs~dg~i~iwd~~~~~ 383 (474)
++.++++|+..+.+++|+...+.
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred CcceEecccccceEEEecCCCCc
Confidence 66699999999999999976554
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.59 E-value=5e-15 Score=133.27 Aligned_cols=251 Identities=17% Similarity=0.191 Sum_probs=187.0
Q ss_pred EEEEE--cCCEEEEeeCCCcEEEEeCCc--cccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecc
Q 047728 114 YSLAA--AGDLLYTGSDSKNIRVWKNQR--EFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGT 188 (474)
Q Consensus 114 ~~~~~--~~~~l~tgs~dg~v~vwd~~~--~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 188 (474)
+.+.+ +|++|+.|+..|.|-.+|+.. ....+ .-...|..+.|- +..+++......+.|||-..-+.-..
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei-~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHCl----- 206 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI-NVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCL----- 206 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeee-ehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeeh-----
Confidence 44444 499999999999999998543 22222 234567778775 55666666777899999765443211
Q ss_pred cCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEE
Q 047728 189 LPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI 268 (474)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v 268 (474)
.....|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..+
T Consensus 207 -----------------------------k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm 257 (545)
T KOG1272|consen 207 -----------------------------KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVM 257 (545)
T ss_pred -----------------------------hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchh
Confidence 133568889999998899999999999999999999999998888999999
Q ss_pred EecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccccee
Q 047728 269 VAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV 347 (474)
Q Consensus 269 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 347 (474)
+-+|-+ .+-+|...|+|.+|...... +...+..|.++|.++++.++|+++++.+.|..++|||++....+...
T Consensus 258 ~qNP~NaVih~GhsnGtVSlWSP~ske------PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 258 KQNPYNAVIHLGHSNGTVSLWSPNSKE------PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred hcCCccceEEEcCCCceEEecCCCCcc------hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence 999988 88899999999999877554 35677889999999999999999999999999999999988766666
Q ss_pred eeecceeeEEEEecCCEEEEEeCCCcEEEEECC-CCceEEEEeecCC--ccceEEEEEeeCCc
Q 047728 348 LRGHKLAILCLVTAGNLVFSGSADMSICIWRRK-ENEHICLSMLTGH--SGPVKCLAVEKDDE 407 (474)
Q Consensus 348 ~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~-~~~~~~~~~~~~h--~~~v~~l~~~~~~~ 407 (474)
...|...-++++. +-+++.+....|.||.-. .+........-.| .++|..+.|.|-..
T Consensus 332 ~tp~~a~~ls~Sq--kglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 332 RTPHPASNLSLSQ--KGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED 392 (545)
T ss_pred ecCCCcccccccc--ccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH
Confidence 5556555555554 444555556679999532 2110011111122 35899999999765
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=1.5e-13 Score=121.45 Aligned_cols=216 Identities=11% Similarity=0.159 Sum_probs=162.0
Q ss_pred eeeeecCcEEEEEEcCCEEEEeeCCCcEEEEeCC------ccccccccCccCEEEEEec---CCEEEEEeCC--CeEEEE
Q 047728 105 SLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQ------REFSGFKSNSGLVKAIVIS---NEKIFSGHQD--GKIRVW 173 (474)
Q Consensus 105 ~l~~h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~------~~~~~~~~h~~~V~~i~~~---~~~l~s~~~d--g~i~vw 173 (474)
+....++.|..+......|++|-.+|.+.+|... ..+..+..+ ..+..+.-. +..+++|+.. ..+.+|
T Consensus 100 ~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred ccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence 3445677888888888899999999999999744 222333333 334444443 5577789999 889999
Q ss_pred ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC--CCEEEEEECCCcEEEEEcCC
Q 047728 174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED--QNLLYSASWDKTFKVWRTSD 251 (474)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~~~ 251 (474)
|+++.+.+... ... +..++.+ .-.-.++++.|-+. ...|++++.-+.|++||.+.
T Consensus 179 dle~~~qiw~a--KNv------------pnD~L~L---------rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~ 235 (412)
T KOG3881|consen 179 DLEQSKQIWSA--KNV------------PNDRLGL---------RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH 235 (412)
T ss_pred ecccceeeeec--cCC------------CCccccc---------eeeeeeccceecCCCCCceEEEEecceeEEEecCcc
Confidence 99987443221 111 1111111 12235678889886 88999999999999999986
Q ss_pred c-ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC
Q 047728 252 Y-KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS 329 (474)
Q Consensus 252 ~-~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 329 (474)
+ +++..+.....++.++...|++ .+++|...|.+..||++.... ....+.+..+.|+++..+|..+++++++-
T Consensus 236 qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl-----~g~~~kg~tGsirsih~hp~~~~las~GL 310 (412)
T KOG3881|consen 236 QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL-----LGCGLKGITGSIRSIHCHPTHPVLASCGL 310 (412)
T ss_pred cCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee-----eccccCCccCCcceEEEcCCCceEEeecc
Confidence 5 4677777778899999999999 999999999999999986543 34457788899999999999999999999
Q ss_pred CCcEEEeecCcccccceeee
Q 047728 330 DGLVNFWERELNLSHGGVLR 349 (474)
Q Consensus 330 dg~i~v~d~~~~~~~~~~~~ 349 (474)
|..|+|+|+++...+...+.
T Consensus 311 DRyvRIhD~ktrkll~kvYv 330 (412)
T KOG3881|consen 311 DRYVRIHDIKTRKLLHKVYV 330 (412)
T ss_pred ceeEEEeecccchhhhhhhh
Confidence 99999999998655544443
No 219
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.57 E-value=5.5e-13 Score=116.02 Aligned_cols=249 Identities=16% Similarity=0.258 Sum_probs=176.7
Q ss_pred ceeeeeeeeecCcEEEEE--EcCCEEEEeeCCCcEEEEe---CCcccc-ccccCccCEEEEEec--CCEEEEEeCCCeEE
Q 047728 100 NVLIGSLVREEGHIYSLA--AAGDLLYTGSDSKNIRVWK---NQREFS-GFKSNSGLVKAIVIS--NEKIFSGHQDGKIR 171 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~--~~~~~l~tgs~dg~v~vwd---~~~~~~-~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~ 171 (474)
..++..+.||.+.|+... +-.+-+++.+.|.++|||- ..+.-. .......+++++.+. -..|+.|-..|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 356677888988888744 4467899999999999995 222222 223346678888887 44788888889888
Q ss_pred EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC
Q 047728 172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD 251 (474)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 251 (474)
-+.+...-... .....+..|...|..+-|+.....+++.+.|..+.---.+.
T Consensus 94 efs~sedfnkm----------------------------~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~ 145 (404)
T KOG1409|consen 94 EFALSEDFNKM----------------------------TFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES 145 (404)
T ss_pred EEEhhhhhhhc----------------------------chhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence 87664321110 00123456999999999999889999999998776555555
Q ss_pred cceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC
Q 047728 252 YKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG 331 (474)
Q Consensus 252 ~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 331 (474)
+..+..+.. .....++.+.-. ..+.|...|.|.+-.+..... .+...+.+|...+++++|.+....|++|..|.
T Consensus 146 ~~~lg~Y~~-~~~~t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~----~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~ 219 (404)
T KOG1409|consen 146 GNRLGGYNF-ETPASALQFDAL-YAFVGDHSGQITMLKLEQNGC----QLITTFNGHTGEVTCLKWDPGQRLLFSGASDH 219 (404)
T ss_pred CCcccceEe-eccCCCCceeeE-EEEecccccceEEEEEeecCC----ceEEEEcCcccceEEEEEcCCCcEEEeccccC
Confidence 555443322 111111211111 566777788877776654332 24677889999999999999999999999999
Q ss_pred cEEEeecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCC
Q 047728 332 LVNFWERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKEN 382 (474)
Q Consensus 332 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~ 382 (474)
.+.+||+-...-....+.+|...+..++. .-+.+++++.||.|.+|+.+..
T Consensus 220 ~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 220 SVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 99999998776666677788777765554 5788999999999999998754
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2.2e-12 Score=125.18 Aligned_cols=219 Identities=16% Similarity=0.124 Sum_probs=136.3
Q ss_pred ccCCeeEEEecCCCCEEEEEECC---CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eE-EEeeCCCcEEEEEcccC
Q 047728 219 HFDAISSLSMSEDQNLLYSASWD---KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTGSADGTVKVWRRELQ 293 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~~~dg~i~iwd~~~~ 293 (474)
+...+.+.+|+||++.|+..+.+ ..|.+||+.+++... +....+.+....|+||+ .| ++.+.+|...||.++..
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 66778899999999999877643 359999999887543 33344556788999999 55 46778888888876543
Q ss_pred CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CCcEEEeec--CcccccceeeeecceeeEEEEecCCEEEEEeC
Q 047728 294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DGLVNFWER--ELNLSHGGVLRGHKLAILCLVTAGNLVFSGSA 370 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~--~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~ 370 (474)
... ...+..+........|+|||+.|+..+. ++...+|.+ ..+........+.......++|+|++|+..+.
T Consensus 273 ~~~-----~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 273 GSG-----LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred CCC-----cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 221 1223334445567889999998876554 456666654 33322111122222234678999999987775
Q ss_pred CC---cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEccCCCCCCCCCccccc
Q 047728 371 DM---SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRVSEQAPPLVSTTQQHP 446 (474)
Q Consensus 371 dg---~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~~~~~~~~~~~~~~ 446 (474)
++ .|.+||+.+++.. .+... .......|+||++ .|+.++ ..|.-.++-+.... .....
T Consensus 348 ~~g~~~I~v~d~~~g~~~---~lt~~-~~~~~p~~spdg~--------~l~~~~~~~g~~~l~~~~~~g------~~~~~ 409 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVT---ALTDT-TRDESPSFAPNGR--------YILYATQQGGRSVLAAVSSDG------RIKQR 409 (427)
T ss_pred cCCcEEEEEEECCCCCeE---EccCC-CCccCceECCCCC--------EEEEEEecCCCEEEEEEECCC------CceEE
Confidence 54 6999999887643 22222 2346789999998 444444 44443344333211 12233
Q ss_pred ccCCCCCCCccccCC
Q 047728 447 LEGHGVAPNSLPYAP 461 (474)
Q Consensus 447 ~~~~~~~v~~l~~~p 461 (474)
+..+.+.+...+|+|
T Consensus 410 l~~~~g~~~~p~wsp 424 (427)
T PRK02889 410 LSVQGGDVREPSWGP 424 (427)
T ss_pred eecCCCCCCCCccCC
Confidence 444555566665554
No 221
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.55 E-value=4.3e-12 Score=119.31 Aligned_cols=292 Identities=11% Similarity=0.121 Sum_probs=173.8
Q ss_pred CCEE-EEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccce
Q 047728 120 GDLL-YTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKD 194 (474)
Q Consensus 120 ~~~l-~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 194 (474)
++++ ++-..+|.|.|.|.. +.+..+......-..+.++ ++++++++.||.|.++|+.+.+.......+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G------- 77 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG------- 77 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-------
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-------
Confidence 3454 456678999999954 4556665544433445565 678999999999999999999865544332
Q ss_pred eeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeec-------Cccee
Q 047728 195 FIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAH-------DDAVN 266 (474)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~ 266 (474)
....++++++||++++++. .++.+.++|.++.+.+..+... ...+.
T Consensus 78 --------------------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~ 131 (369)
T PF02239_consen 78 --------------------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVA 131 (369)
T ss_dssp --------------------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EE
T ss_pred --------------------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCce
Confidence 2456899999999998775 6899999999999999888653 23567
Q ss_pred EEEecCCC-eEEEe-eCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccc
Q 047728 267 SIVAGFDG-LVFTG-SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLS 343 (474)
Q Consensus 267 ~v~~~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~ 343 (474)
++..++.. .++.. -..+.|.+.|...... +...............|+|++++++++ ..+..|.++|..+...
T Consensus 132 aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-----~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 132 AIVASPGRPEFVVNLKDTGEIWVVDYSDPKN-----LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp EEEE-SSSSEEEEEETTTTEEEEEETTTSSC-----EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred eEEecCCCCEEEEEEccCCeEEEEEeccccc-----cceeeecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence 77777777 44444 4457787778765432 222333445667889999999987664 5567899999887755
Q ss_pred cceeee---ecceeeE-----------EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccc
Q 047728 344 HGGVLR---GHKLAIL-----------CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL 409 (474)
Q Consensus 344 ~~~~~~---~~~~~v~-----------~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 409 (474)
...... .|..... ...-.+...++.-....+.+||....+ .+..+....++ .-+..+|+++
T Consensus 207 v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk--vv~~I~~~G~g-lFi~thP~s~-- 281 (369)
T PF02239_consen 207 VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK--VVKTIPTQGGG-LFIKTHPDSR-- 281 (369)
T ss_dssp EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS--EEEEEE-SSSS---EE--TT-S--
T ss_pred EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCe--EEEEEECCCCc-ceeecCCCCc--
Confidence 432221 2322222 222223333333333456678877776 45666665556 7788899998
Q ss_pred cccceEEEEEe----cCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCcee
Q 047728 410 SREKRWILYSG----SLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRIC 470 (474)
Q Consensus 410 ~~~~~~~l~s~----s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l 470 (474)
+|+.. ...++|.++|..+.+ ....+..... .-..|+.|++||+.+
T Consensus 282 ------~vwvd~~~~~~~~~v~viD~~tl~-------~~~~i~~~~~---~~~~h~ef~~dG~~v 330 (369)
T PF02239_consen 282 ------YVWVDTFLNPDADTVQVIDKKTLK-------VVKTITPGPG---KRVVHMEFNPDGKEV 330 (369)
T ss_dssp ------EEEEE-TT-SSHT-EEEEECCGTE-------EEE-HHHHHT-----EEEEEE-TTSSEE
T ss_pred ------cEEeeccCCCCCceEEEEECcCcc-------eeEEEeccCC---CcEeccEECCCCCEE
Confidence 67766 556899999998862 2222211110 004566889999865
No 222
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.55 E-value=3.1e-13 Score=124.03 Aligned_cols=188 Identities=18% Similarity=0.216 Sum_probs=133.3
Q ss_pred CCEEEEeeCCCcEEEEeCCc-ccccc-----ccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccC
Q 047728 120 GDLLYTGSDSKNIRVWKNQR-EFSGF-----KSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLP 190 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~~-~~~~~-----~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 190 (474)
+--|+.|-..|.|.+.|... ++..+ .-....|+|+.|- ...++.+-.+|.+.+||.+............++
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k 264 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK 264 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence 33566777778888887432 22111 1134689999996 557888899999999987432221111111111
Q ss_pred cccee--eeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEE
Q 047728 191 TFKDF--IKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSI 268 (474)
Q Consensus 191 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v 268 (474)
....+ ..+.. ...+.+...|.--++.|+.++|+|||++||+.+.||.++|||..+.+++..++.--+...|+
T Consensus 265 ~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCv 338 (636)
T KOG2394|consen 265 DGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCV 338 (636)
T ss_pred CCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEE
Confidence 11110 00000 00113334455566789999999999999999999999999999988888777777889999
Q ss_pred EecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC
Q 047728 269 VAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP 319 (474)
Q Consensus 269 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 319 (474)
+|+||| +|++|++|..|.||.+.... .+..-.+|.+.|..++|+|
T Consensus 339 cWSPDGKyIvtGGEDDLVtVwSf~erR------VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 339 CWSPDGKYIVTGGEDDLVTVWSFEERR------VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEcCCccEEEecCCcceEEEEEeccce------EEEeccccccceeeEeecc
Confidence 999999 99999999999999987543 4677889999999999997
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=1.8e-14 Score=129.74 Aligned_cols=194 Identities=16% Similarity=0.247 Sum_probs=161.6
Q ss_pred eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728 223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFS 302 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 302 (474)
-..+.++.+|.+|+.|+..|.|-.+|..++++...+.. ...|.++.|..+..+++......+.|||-.. . .
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~G----t----E 202 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYDNNG----T----E 202 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEecCCC----c----E
Confidence 45688899999999999999999999999998888765 5678899998777777777889999998542 1 1
Q ss_pred eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-cceeeEEEEecCCEEEEEeCCCcEEEEECCC
Q 047728 303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-HKLAILCLVTAGNLVFSGSADMSICIWRRKE 381 (474)
Q Consensus 303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~ 381 (474)
.........|..+.|-|..-+|++++..|.++.-|+..+..+..+..+ ....+++-.|-+..+-+|...|+|.+|....
T Consensus 203 lHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 203 LHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred EeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 222333456899999999999999999999999999998776544332 3345677778888999999999999999988
Q ss_pred CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 382 NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 382 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
.+ ++..+..|.++|.+|++.++|. |++|.|.|..++|||++.-.
T Consensus 283 ke--PLvKiLcH~g~V~siAv~~~G~--------YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 283 KE--PLVKILCHRGPVSSIAVDRGGR--------YMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred cc--hHHHHHhcCCCcceEEECCCCc--------EEeecccccceeEeeecccc
Confidence 77 4567788999999999999999 99999999999999998763
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.54 E-value=1.6e-12 Score=112.54 Aligned_cols=291 Identities=14% Similarity=0.157 Sum_probs=185.4
Q ss_pred cCcEEEEEEcCCEEEEeeCCCcEEEEeCCc--cccccccCccCEEEEEecC---CEEEEEeCCCeEEEEecCCCCcceee
Q 047728 110 EGHIYSLAAAGDLLYTGSDSKNIRVWKNQR--EFSGFKSNSGLVKAIVISN---EKIFSGHQDGKIRVWKVSSKDASIHK 184 (474)
Q Consensus 110 ~~~i~~~~~~~~~l~tgs~dg~v~vwd~~~--~~~~~~~h~~~V~~i~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~ 184 (474)
.+...+++++|+++|+++.- .+.|-|... ..+.+. --+.|.-|.|.- -.|.....|+.|.+|++...+.....
T Consensus 10 ~~~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 10 LNPFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred cCCceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 34567899999999999876 677777542 222222 245677777762 24666788999999999876543221
Q ss_pred eecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCE-EEEEECCCcEEEEEcCCcceeeeeeecCc
Q 047728 185 RVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNL-LYSASWDKTFKVWRTSDYKCLESVIAHDD 263 (474)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 263 (474)
......+.+++|+|||+. |.+...|-.|.+|.+.+.+....- -.+.
T Consensus 88 --------------------------------deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~ 134 (447)
T KOG4497|consen 88 --------------------------------DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKT 134 (447)
T ss_pred --------------------------------ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec-cccc
Confidence 125567899999999955 556667899999999887654432 2344
Q ss_pred ceeEEEecCCCe-EEEeeC------------------------------------CCcEEEEEcccCCCceeeeeeeeee
Q 047728 264 AVNSIVAGFDGL-VFTGSA------------------------------------DGTVKVWRRELQGKGTKHFFSQTLL 306 (474)
Q Consensus 264 ~v~~v~~~~~~~-l~~~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (474)
.+..++|++||. .+..+. +..+.+||--..- .....
T Consensus 135 ~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley-------kv~aY 207 (447)
T KOG4497|consen 135 NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY-------KVYAY 207 (447)
T ss_pred CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh-------eeeee
Confidence 567888888883 333322 1224444422111 01122
Q ss_pred cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc---------------cc-----------------------------
Q 047728 307 KQECAVTALAISPDAAIVYCGSSDGLVNFWEREL---------------NL----------------------------- 342 (474)
Q Consensus 307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~---------------~~----------------------------- 342 (474)
...-.+..++|+|.+++|++|+.|+.+++.+--+ ..
T Consensus 208 e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~ 287 (447)
T KOG4497|consen 208 ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAH 287 (447)
T ss_pred eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccC
Confidence 2345688999999999999999999998855100 00
Q ss_pred ---------ccc------eeee--------ecceeeEEEEecCCEEEEEeCC--CcEEEEECCCCceEEEEeecCCccce
Q 047728 343 ---------SHG------GVLR--------GHKLAILCLVTAGNLVFSGSAD--MSICIWRRKENEHICLSMLTGHSGPV 397 (474)
Q Consensus 343 ---------~~~------~~~~--------~~~~~v~~~~~~~~~l~sgs~d--g~i~iwd~~~~~~~~~~~~~~h~~~v 397 (474)
... ..++ ......+++++|..++++-.+. +.+-+||++..+ +...-....+|
T Consensus 288 ~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~---l~avLiQk~pi 364 (447)
T KOG4497|consen 288 IWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK---LHAVLIQKHPI 364 (447)
T ss_pred ccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh---hhhhhhhccce
Confidence 000 0000 0112336778888888887654 689999998876 33333456789
Q ss_pred EEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728 398 KCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP 461 (474)
Q Consensus 398 ~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p 461 (474)
....|+|... .|+.+.....+++|....... -..++....|..+.|+.
T Consensus 365 raf~WdP~~p--------rL~vctg~srLY~W~psg~~~--------V~vP~~GF~i~~l~W~~ 412 (447)
T KOG4497|consen 365 RAFEWDPGRP--------RLVVCTGKSRLYFWAPSGPRV--------VGVPKKGFNIQKLQWLQ 412 (447)
T ss_pred eEEEeCCCCc--------eEEEEcCCceEEEEcCCCceE--------EecCCCCceeeeEEecC
Confidence 9999999987 566665566799998765311 11223335677776654
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.53 E-value=7.5e-11 Score=101.92 Aligned_cols=227 Identities=12% Similarity=0.200 Sum_probs=153.0
Q ss_pred EEEEEc--CCEEEEeeCCCcEEEEeCCcccc--c--cccCccCEEEEEecCCEEE-EEeCC------CeEEEEecCCCCc
Q 047728 114 YSLAAA--GDLLYTGSDSKNIRVWKNQREFS--G--FKSNSGLVKAIVISNEKIF-SGHQD------GKIRVWKVSSKDA 180 (474)
Q Consensus 114 ~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~--~--~~~h~~~V~~i~~~~~~l~-s~~~d------g~i~vwd~~~~~~ 180 (474)
.+++++ ..-++.|.++| .+||+.+.... . +....-.+..+-|-.++|+ .|+.+ ..|.|||=....+
T Consensus 9 lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~ 87 (346)
T KOG2111|consen 9 LSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERC 87 (346)
T ss_pred eEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcE
Confidence 346666 55788888777 89998653211 1 1111223444445455544 44433 4699999433333
Q ss_pred ceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC-Ccceeeeee
Q 047728 181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS-DYKCLESVI 259 (474)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~ 259 (474)
.... .-..+|.++.+.++ .|++.- .+.|.||... +.+.+..+.
T Consensus 88 i~el---------------------------------~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~e 131 (346)
T KOG2111|consen 88 IIEL---------------------------------SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIE 131 (346)
T ss_pred EEEE---------------------------------EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeee
Confidence 2221 15568999999765 566665 5779999987 556666654
Q ss_pred ecC--cceeEEEecCCC-eEE-EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc-EE
Q 047728 260 AHD--DAVNSIVAGFDG-LVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL-VN 334 (474)
Q Consensus 260 ~~~--~~v~~v~~~~~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~-i~ 334 (474)
.-. ..+.+++-..+. .|+ -|-.-|.|+|-|+...... .......|...|.|++++.+|..+|+++..|+ |+
T Consensus 132 t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIR 207 (346)
T KOG2111|consen 132 TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN----APSIINAHDSDIACVALNLQGTLVATASTKGTLIR 207 (346)
T ss_pred cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEE
Confidence 432 223333332222 333 3556799999998755432 34667889999999999999999999999997 88
Q ss_pred EeecCcccccceeeeecc---eeeEEEEecCCEEEEEeCCCcEEEEECCC
Q 047728 335 FWERELNLSHGGVLRGHK---LAILCLVTAGNLVFSGSADMSICIWRRKE 381 (474)
Q Consensus 335 v~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~l~sgs~dg~i~iwd~~~ 381 (474)
|||..++..+....++.. ...++|+++..+|++.++.|+++||.++.
T Consensus 208 IFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 208 IFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999999988877666543 33466778899999999999999998864
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=4.1e-12 Score=123.63 Aligned_cols=195 Identities=14% Similarity=0.053 Sum_probs=127.0
Q ss_pred ccCCeeEEEecCCCCEEEEEECC---CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eE-EEeeCCC--cEEEEEcc
Q 047728 219 HFDAISSLSMSEDQNLLYSASWD---KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTGSADG--TVKVWRRE 291 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~~~dg--~i~iwd~~ 291 (474)
+...+.+.+|+||++.|+..+.+ ..|.+||+.+++... +....+...+..|+||| .+ ++.+.+| .|.+||+.
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~ 280 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG 280 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence 66678999999999999987743 469999998876533 33344455678999999 44 4556666 48888886
Q ss_pred cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CCc--EEEeecCcccccceeeeecceeeEEEEecCCEEEEE
Q 047728 292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DGL--VNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG 368 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg 368 (474)
.+.. ..+..+.......+|+|+++.|+..+. +|. |+++|+.++........+......+++++|++|+..
T Consensus 281 ~g~~-------~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 281 SRQL-------TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred CCCe-------EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 5431 222333444567899999998887653 444 666676655332212223333346889999998876
Q ss_pred eCCC---cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC-CC--cEEEEEccC
Q 047728 369 SADM---SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL-DK--SVKMWRVSE 433 (474)
Q Consensus 369 s~dg---~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~-Dg--~i~vw~~~~ 433 (474)
+.++ .|.+||+.+++.. .+. +........|+||++ +|+..+. .+ .|.++++..
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~---~Lt-~~~~~~~p~~spdG~--------~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVR---TLT-PGSLDESPSFAPNGS--------MVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred ECCCCceeEEEEECCCCCeE---ECC-CCCCCCCceECCCCC--------EEEEEEecCCceEEEEEECCC
Confidence 5443 6999999887643 232 222445678999998 4544443 33 466666643
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=6.4e-12 Score=121.76 Aligned_cols=232 Identities=13% Similarity=0.013 Sum_probs=150.4
Q ss_pred cEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEe---CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCC
Q 047728 131 NIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGH---QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSN 204 (474)
Q Consensus 131 ~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (474)
.|.+||.. .....+..+...+....|+ ++.|+..+ .+..|.+|++.+++......
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~------------------- 240 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS------------------- 240 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-------------------
Confidence 58888854 3344555667789999998 56776543 24578999988765321110
Q ss_pred eEEEeeeccceeeeccCCeeEEEecCCCCEEEEE-ECCC--cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee
Q 047728 205 YIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA-SWDK--TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS 280 (474)
Q Consensus 205 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~ 280 (474)
....+...+|+|||+.|+.. +.++ .|++||+.+++... +..+...+....|+||+ .|+..+
T Consensus 241 --------------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s 305 (429)
T PRK03629 241 --------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTS 305 (429)
T ss_pred --------------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEe
Confidence 12234468999999988765 4444 58999998876543 43445567889999999 555544
Q ss_pred C-CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC---CcEEEeecCcccccceeeeecceeeE
Q 047728 281 A-DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD---GLVNFWERELNLSHGGVLRGHKLAIL 356 (474)
Q Consensus 281 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~~v~ 356 (474)
. ++...||.+...... ...+...........|+|+|+.|+..+.+ ..|.+||+.++... .+.........
T Consensus 306 ~~~g~~~Iy~~d~~~g~-----~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p 379 (429)
T PRK03629 306 DQAGRPQVYKVNINGGA-----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETP 379 (429)
T ss_pred CCCCCceEEEEECCCCC-----eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCc
Confidence 4 456666654432221 11222233445678999999998876543 35888998776432 22222223346
Q ss_pred EEEecCCEEEEEeCCCc---EEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728 357 CLVTAGNLVFSGSADMS---ICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405 (474)
Q Consensus 357 ~~~~~~~~l~sgs~dg~---i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~ 405 (474)
.+++||++|+..+.++. +.++++.... ...+.+|.+.+...+|+|-
T Consensus 380 ~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~---~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 380 SIAPNGTMVIYSSSQGMGSVLNLVSTDGRF---KARLPATDGQVKFPAWSPY 428 (429)
T ss_pred eECCCCCEEEEEEcCCCceEEEEEECCCCC---eEECccCCCCcCCcccCCC
Confidence 78899999999887764 6777776554 3456678888999999873
No 228
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=1.4e-12 Score=128.91 Aligned_cols=196 Identities=17% Similarity=0.257 Sum_probs=156.9
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcc----eeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDA----VNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
.|....+..+...++.++.++.+.+||...+.....+...... ..-+.++++. ++++|+.-+.|.+|+......
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~- 167 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK- 167 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC-
Confidence 3444555667788999999999999999887766655432221 1112344455 899999999999999873332
Q ss_pred eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEE
Q 047728 297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICI 376 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~i 376 (474)
...+.+|++.|.++.++-+|.++++.++|.++++|++++.+.......+|.+.+.......+.+++++.|-+.++
T Consensus 168 -----p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrv 242 (967)
T KOG0974|consen 168 -----PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRV 242 (967)
T ss_pred -----cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEE
Confidence 236889999999999999999999999999999999999988877778999999777776669999999999999
Q ss_pred EECCCCceEEEEeecCCcc-ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 377 WRRKENEHICLSMLTGHSG-PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 377 wd~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
|+.+..+ +.++.+|.+ .|..++..++.. .++|++.|+.+++|++...
T Consensus 243 W~~~~~~---l~~y~~h~g~~iw~~~~~~~~~--------~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 243 WGVNGTQ---LEVYDEHSGKGIWKIAVPIGVI--------IKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eecccce---ehhhhhhhhcceeEEEEcCCce--------EEEeeccCcchhhhhhhcc
Confidence 9877665 347777764 688999988887 8999999999999998764
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.5e-11 Score=119.96 Aligned_cols=196 Identities=12% Similarity=0.058 Sum_probs=129.4
Q ss_pred eccCCeeEEEecCCCCEEEEEEC---CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eE-EEeeCCCc--EEEEEc
Q 047728 218 KHFDAISSLSMSEDQNLLYSASW---DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTGSADGT--VKVWRR 290 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~~~dg~--i~iwd~ 290 (474)
.|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+....|+||| .| ++.+.++. |.+||+
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence 37778999999999999887763 468999999887653 445566677888999999 44 56666666 556676
Q ss_pred ccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CC--cEEEeecCcccccceeee-ecceeeEEEEecCCEEE
Q 047728 291 ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DG--LVNFWERELNLSHGGVLR-GHKLAILCLVTAGNLVF 366 (474)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~ 366 (474)
..+. ...+..+........|+||++.|+..+. +| .|+++|+..+... .+.. ........++|+|++|+
T Consensus 278 ~~~~-------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 278 RSGT-------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred CCCc-------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEE
Confidence 5432 1233344455677899999998887664 33 5788887665332 2221 12223367889999998
Q ss_pred EEeCC---CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEE-ecCCC-----cEEEEEccCC
Q 047728 367 SGSAD---MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS-GSLDK-----SVKMWRVSEQ 434 (474)
Q Consensus 367 sgs~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s-~s~Dg-----~i~vw~~~~~ 434 (474)
....+ ..|.+||+.++... .+. ....+....|+||++ .|+. ....+ .|.++++..+
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~~---~lt-~~~~~~~p~~spDG~--------~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGER---ILT-SGFLVEGPTWAPNGR--------VIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EEEcCCCceEEEEEECCCCceE---ecc-CCCCCCCCeECCCCC--------EEEEEEccCCCCCcceEEEEECCCC
Confidence 76643 36888888665432 222 223467889999998 4444 33232 4666676544
No 230
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.50 E-value=3.9e-11 Score=103.66 Aligned_cols=180 Identities=12% Similarity=0.209 Sum_probs=128.0
Q ss_pred CcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC
Q 047728 242 KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA 321 (474)
Q Consensus 242 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 321 (474)
..|.|||=...+++.++. ...+|.++.+.++. +++. .++.|.||......+.. ...........+.+++-..+.
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~r-iVvv-l~~~I~VytF~~n~k~l---~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDR-IVVV-LENKIYVYTFPDNPKLL---HVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCe-EEEE-ecCeEEEEEcCCChhhe---eeeecccCCCceEeecCCCCc
Confidence 569999977777777775 47889999998875 3332 46789999876433211 111111222334333333344
Q ss_pred CEEEE-EcCCCcEEEeecCcccc-cceeeeecceeeEEEEe--cCCEEEEEeCCCc-EEEEECCCCceEEEEeecCCccc
Q 047728 322 AIVYC-GSSDGLVNFWERELNLS-HGGVLRGHKLAILCLVT--AGNLVFSGSADMS-ICIWRRKENEHICLSMLTGHSGP 396 (474)
Q Consensus 322 ~~l~~-~~~dg~i~v~d~~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~~h~~~ 396 (474)
.+|+. |..-|.|.|-|+..... ...++..|...+.|+.- +|.++|+++..|+ |||||..+++.+....-......
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD 228 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence 45554 45568999999876654 34678899988877765 6999999999986 69999999985433333334567
Q ss_pred eEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 397 VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 397 v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
|.+++|+|+.. +|+.+|+.|+|.|+.+....
T Consensus 229 iy~iaFSp~~s--------~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 229 IYCIAFSPNSS--------WLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEEEeCCCcc--------EEEEEcCCCeEEEEEeecCC
Confidence 99999999999 99999999999999998754
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.5e-11 Score=119.65 Aligned_cols=230 Identities=13% Similarity=0.072 Sum_probs=146.5
Q ss_pred CcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCC---CeEEEEecCCCCcceeeeecccCccceeeeeecCCC
Q 047728 130 KNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQD---GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPS 203 (474)
Q Consensus 130 g~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (474)
..|.+||.. .....+..+...+....|+ ++.|+..+.+ ..|.+|++.+++.....
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~------------------- 244 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA------------------- 244 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec-------------------
Confidence 358888854 3445566677788888987 6678877643 46999999876532111
Q ss_pred CeEEEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCC--cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEe
Q 047728 204 NYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDK--TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTG 279 (474)
Q Consensus 204 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~ 279 (474)
.......+.+|+|+++.|+ +.+.++ .|++||+.+++. ..+..+........|+||+ .++..
T Consensus 245 --------------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~ 309 (433)
T PRK04922 245 --------------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFT 309 (433)
T ss_pred --------------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEE
Confidence 1223345789999998775 445555 599999988764 3454555556678999999 55544
Q ss_pred e-CCCcEEEE--EcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC---cEEEeecCcccccceeeeecce
Q 047728 280 S-ADGTVKVW--RRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG---LVNFWERELNLSHGGVLRGHKL 353 (474)
Q Consensus 280 ~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~ 353 (474)
+ .+|...+| |+..+.. ..+..........+|+|+|+.|+..+.++ .|.+||+.++... .+..+...
T Consensus 310 sd~~g~~~iy~~dl~~g~~-------~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~ 381 (433)
T PRK04922 310 SDRGGRPQIYRVAASGGSA-------ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLD 381 (433)
T ss_pred ECCCCCceEEEEECCCCCe-------EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCC
Confidence 4 45664454 5433221 11112223445689999999998765443 5899998766433 22222223
Q ss_pred eeEEEEecCCEEEEEeCC---CcEEEEECCCCceEEEEeecCCccceEEEEEee
Q 047728 354 AILCLVTAGNLVFSGSAD---MSICIWRRKENEHICLSMLTGHSGPVKCLAVEK 404 (474)
Q Consensus 354 ~v~~~~~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~ 404 (474)
.-..++++|++++..+.+ +.|.++++.... ...+..+.+.+...+|+|
T Consensus 382 ~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~---~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 382 ESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV---RQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECCCCc---eEEcccCCCCCCCCccCC
Confidence 345789999988776653 467788886554 334445556677777876
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=5e-11 Score=115.68 Aligned_cols=244 Identities=12% Similarity=0.093 Sum_probs=149.6
Q ss_pred cCCEEEEeeCC--CcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCC---CeEEEEecCCCCcceeeeecccC
Q 047728 119 AGDLLYTGSDS--KNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQD---GKIRVWKVSSKDASIHKRVGTLP 190 (474)
Q Consensus 119 ~~~~l~tgs~d--g~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~ 190 (474)
++++.++.... ..|.++|.. .....+..+...+.+.+|+ ++.|+..+.+ ..|.+||+.+++.....
T Consensus 163 ~~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~------ 236 (427)
T PRK02889 163 STRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA------ 236 (427)
T ss_pred ccEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee------
Confidence 34544443333 346666643 3344555677888899998 5677766543 35999999877542111
Q ss_pred ccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCCcEEEEE--cCCcceeeeeeecCcceeE
Q 047728 191 TFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDKTFKVWR--TSDYKCLESVIAHDDAVNS 267 (474)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~iwd--~~~~~~~~~~~~~~~~v~~ 267 (474)
.....+.+.+|+||++.|+ +.+.++...||. +.++. ...+..+......
T Consensus 237 ---------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~ 288 (427)
T PRK02889 237 ---------------------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTE 288 (427)
T ss_pred ---------------------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcC
Confidence 1223456789999998886 566777766665 44443 4455555555677
Q ss_pred EEecCCC-eEE-EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC---cEEEeecCccc
Q 047728 268 IVAGFDG-LVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG---LVNFWERELNL 342 (474)
Q Consensus 268 v~~~~~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---~i~v~d~~~~~ 342 (474)
..|+||| .++ +...+|...+|.+....... .............+|+|+|++|+..+.++ .|.+||+.++.
T Consensus 289 ~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-----~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 289 PFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-----QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred eEEcCCCCEEEEEecCCCCcEEEEEECCCCce-----EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 8899999 555 44445777888765332211 11111223344678999999998776554 59999988764
Q ss_pred ccceeeeecceeeEEEEecCCEEEEEeCCC---cEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728 343 SHGGVLRGHKLAILCLVTAGNLVFSGSADM---SICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405 (474)
Q Consensus 343 ~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~ 405 (474)
.. .+..........++++++.|+..+.++ .+.+.+..... ...+..+.+.+...+|+|-
T Consensus 364 ~~-~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~---~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 364 VT-ALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI---KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eE-EccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc---eEEeecCCCCCCCCccCCC
Confidence 32 222222334568899999888777543 35555554332 3344456667777788764
No 233
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.43 E-value=7.1e-11 Score=100.95 Aligned_cols=267 Identities=13% Similarity=0.148 Sum_probs=169.1
Q ss_pred CCcEEEEeCCccc----ccc-ccCccCEEEEEec-----CC-EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeee
Q 047728 129 SKNIRVWKNQREF----SGF-KSNSGLVKAIVIS-----NE-KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIK 197 (474)
Q Consensus 129 dg~v~vwd~~~~~----~~~-~~h~~~V~~i~~~-----~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 197 (474)
.|.+.+|+++... ..+ ......+..+.|. ++ .++-+..+|.|.++..+........+.-..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~-------- 116 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS-------- 116 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------
Confidence 4567777644211 111 1223445555554 34 567778888899988765443322110000
Q ss_pred eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce--eeeeeecCcceeEEEecCCC-
Q 047728 198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC--LESVIAHDDAVNSIVAGFDG- 274 (474)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~~~~- 274 (474)
.. -......++.|++.+..++++-.+|.+.+-+...... ++.++.|+-..+...|+...
T Consensus 117 ----------------~k--i~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p 178 (339)
T KOG0280|consen 117 ----------------KK--ISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP 178 (339)
T ss_pred ----------------hh--hhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCC
Confidence 00 0111345788899899999999999999766555444 34788999999999888665
Q ss_pred -eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCccccc-ceeeeec
Q 047728 275 -LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSH-GGVLRGH 351 (474)
Q Consensus 275 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~ 351 (474)
.+++|+.|+.+..||+|..+. +.-.....|...|.+|.-+| .+.+|++|+.|..|++||.++..++ .....+.
T Consensus 179 nlvytGgDD~~l~~~D~R~p~~----~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G 254 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIPKT----FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGG 254 (339)
T ss_pred ceEEecCCCceEEEEEecCCcc----eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcccc
Confidence 899999999999999994432 23344667888999999887 6789999999999999999855333 2222222
Q ss_pred ceeeEEEEec--CCEEEEEeCCCcEEEEECCCCceE---EEEeecCCccceEEEEEeeCCccccccceEEEEEec-CCCc
Q 047728 352 KLAILCLVTA--GNLVFSGSADMSICIWRRKENEHI---CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS-LDKS 425 (474)
Q Consensus 352 ~~~v~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~ 425 (474)
...-++.+|. +.+|+++ .-+-.+|-+...+... .....+.|.+-+..-.|..... +|+|++ .|..
T Consensus 255 GVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~--------~lATCsFYDk~ 325 (339)
T KOG0280|consen 255 GVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDS--------FLATCSFYDKK 325 (339)
T ss_pred ceEEEEecchhhhHHHHHH-HhcCceEEEecccccchheeeeccccccceeeccccccccc--------eeeeeeccccc
Confidence 2222333332 2333333 3334566666544322 3445667888888888855544 788875 6777
Q ss_pred EE-EEEccCC
Q 047728 426 VK-MWRVSEQ 434 (474)
Q Consensus 426 i~-vw~~~~~ 434 (474)
++ +|-.-++
T Consensus 326 ~~~~Wl~~t~ 335 (339)
T KOG0280|consen 326 IRQLWLHITG 335 (339)
T ss_pred eeeeeeeccC
Confidence 55 7865554
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1e-10 Score=114.03 Aligned_cols=228 Identities=9% Similarity=-0.002 Sum_probs=146.2
Q ss_pred cEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeC---CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCC
Q 047728 131 NIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQ---DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSN 204 (474)
Q Consensus 131 ~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (474)
.|.+||.. .....+..|...+....|+ ++.|+..+. +..|.+||+.+++...
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~---------------------- 240 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL---------------------- 240 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE----------------------
Confidence 67778743 3445567788899999998 567776653 4689999998775421
Q ss_pred eEEEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCCc--EEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee
Q 047728 205 YIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDKT--FKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS 280 (474)
Q Consensus 205 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~ 280 (474)
+..+...+...+|+|||+.|+ +.+.++. |.+||+.+++. ..+..+........|+||+ .++..+
T Consensus 241 -----------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s 308 (435)
T PRK05137 241 -----------VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFES 308 (435)
T ss_pred -----------eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEE
Confidence 111445667889999998775 5555555 77789887765 4455556667788999999 555544
Q ss_pred -CCC--cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC---CcEEEeecCcccccceeeeeccee
Q 047728 281 -ADG--TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD---GLVNFWERELNLSHGGVLRGHKLA 354 (474)
Q Consensus 281 -~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~~ 354 (474)
.+| .|.++|+..... ..+......+....|+|+++.|+....+ ..|.+||+..+... .+..+....
T Consensus 309 ~~~g~~~Iy~~d~~g~~~-------~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~~~~~~ 380 (435)
T PRK05137 309 DRSGSPQLYVMNADGSNP-------RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTSGFLVE 380 (435)
T ss_pred CCCCCCeEEEEECCCCCe-------EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccCCCCCC
Confidence 444 466667653221 1222234456678899999999876543 35788887654321 222233344
Q ss_pred eEEEEecCCEEEEEeCC------CcEEEEECCCCceEEEEeecCCccceEEEEEee
Q 047728 355 ILCLVTAGNLVFSGSAD------MSICIWRRKENEHICLSMLTGHSGPVKCLAVEK 404 (474)
Q Consensus 355 v~~~~~~~~~l~sgs~d------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~ 404 (474)
...++++|+.|+..+.+ ..+.++|+..+... .+. ..+.+...+|+|
T Consensus 381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~---~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER---EVP-TPGDASDPAWSP 432 (435)
T ss_pred CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE---Ecc-CCCCccCcccCC
Confidence 56789999988765543 25778888766532 332 233456667765
No 235
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=3.7e-11 Score=105.45 Aligned_cols=201 Identities=11% Similarity=0.169 Sum_probs=139.8
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee-cCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCc
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
+..+..++|++.-..++++..|-.|++||-.. ++...++. ....|+|++|-|.+ .|++|+. +-|.+|........
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 34577899999777889999999999999776 44444543 45689999999988 5666654 55889976533221
Q ss_pred eee-------eeeeeeecccccEEEEEEcCCCCEEEEEcC-CCcEEEeecCcccccceeee-ecceeeEEEEecCCEEEE
Q 047728 297 TKH-------FFSQTLLKQECAVTALAISPDAAIVYCGSS-DGLVNFWERELNLSHGGVLR-GHKLAILCLVTAGNLVFS 367 (474)
Q Consensus 297 ~~~-------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~s 367 (474)
... ...........+|+++.|.+||..+++++. |..|.|||.+++....-... ......+.++||+.+|++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 110 011111122378999999999999998876 56799999998866543323 334457899999999999
Q ss_pred EeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 368 GSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 368 gs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
+.-|+..++|.....-. +. ...--.+.|...+|+|+|+. +|++++.. -++|.+.-
T Consensus 256 At~davfrlw~e~q~wt-~e-rw~lgsgrvqtacWspcGsf-------LLf~~sgs--p~lysl~f 310 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWT-KE-RWILGSGRVQTACWSPCGSF-------LLFACSGS--PRLYSLTF 310 (445)
T ss_pred ecccceeeeehhcccce-ec-ceeccCCceeeeeecCCCCE-------EEEEEcCC--ceEEEEee
Confidence 99999999996543221 12 22233458999999999984 56666544 34555543
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.39 E-value=3e-11 Score=103.20 Aligned_cols=148 Identities=13% Similarity=0.188 Sum_probs=102.8
Q ss_pred EEEecCCCCEEEEEEC----------CCcEEEEEcCC-cceeeeeee-cCcceeEEEecCCC-eE--EEeeCCCcEEEEE
Q 047728 225 SLSMSEDQNLLYSASW----------DKTFKVWRTSD-YKCLESVIA-HDDAVNSIVAGFDG-LV--FTGSADGTVKVWR 289 (474)
Q Consensus 225 ~l~~~~~~~~l~s~s~----------dg~i~iwd~~~-~~~~~~~~~-~~~~v~~v~~~~~~-~l--~~~~~dg~i~iwd 289 (474)
.+.|+++|++|+.-.. -+...+|.++. ...+..+.. ..++|.+++|+|++ .+ +.|..+..|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 6788998887765433 13355555522 233444433 34579999999999 43 4455678999999
Q ss_pred cccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC---CCcEEEeecCcccccceeeeecceeeEEEEecCCEEE
Q 047728 290 RELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS---DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVF 366 (474)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 366 (474)
++.. .... -....+..+.|+|+|++|++++. .|.|.+||.++...+.. ........++++|+|++|+
T Consensus 90 ~~~~-------~i~~--~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~-~~~~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 90 VKGK-------KIFS--FGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST-FEHSDATDVEWSPDGRYLA 159 (194)
T ss_pred Cccc-------EeEe--ecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec-cccCcEEEEEEcCCCCEEE
Confidence 9611 1122 23457789999999999999864 46799999996655533 3333456688999999999
Q ss_pred EEeC------CCcEEEEECCCC
Q 047728 367 SGSA------DMSICIWRRKEN 382 (474)
Q Consensus 367 sgs~------dg~i~iwd~~~~ 382 (474)
++.. |+.++||+....
T Consensus 160 ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEeccceeccccEEEEEecCe
Confidence 9874 788999998644
No 237
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=4.6e-10 Score=109.64 Aligned_cols=195 Identities=12% Similarity=0.049 Sum_probs=122.7
Q ss_pred ccCCeeEEEecCCCCEEEEEECC---CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEE-EeeCCC--cEEEEEcc
Q 047728 219 HFDAISSLSMSEDQNLLYSASWD---KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF-TGSADG--TVKVWRRE 291 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-~~~~dg--~i~iwd~~ 291 (474)
+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+||| .|+ +...+| .|.+||+.
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 66678899999999999876644 369999998876533 33334455678999999 454 555555 47777876
Q ss_pred cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CC--cEEEeecCcccccceeeeecceeeEEEEecCCEEEEE
Q 047728 292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DG--LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG 368 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg 368 (474)
.+.. ..+..+........|+|+++.|+..+. ++ .|+++|+.++........+.......+++++++|+..
T Consensus 276 ~~~~-------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 276 SRQL-------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred CCCe-------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 4431 222233445567889999998776553 33 5777777665432222223333346788999998877
Q ss_pred eCC-C--cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCc--EEEEEcc
Q 047728 369 SAD-M--SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKS--VKMWRVS 432 (474)
Q Consensus 369 s~d-g--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~--i~vw~~~ 432 (474)
+.+ + .|.+||+.+++...+.. ........|+|+++. ++++...++. |.++++.
T Consensus 349 ~~~~~~~~l~~~dl~tg~~~~lt~----~~~~~~p~~spdg~~-------i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSVRILTD----TSLDESPSVAPNGTM-------LIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EccCCceEEEEEECCCCCEEEccC----CCCCCCceECCCCCE-------EEEEEecCCceEEEEEECC
Confidence 643 3 58889998876432221 112235689999983 4444444444 5555553
No 238
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=1.1e-08 Score=96.45 Aligned_cols=272 Identities=15% Similarity=0.233 Sum_probs=166.3
Q ss_pred EEEeeCC----CcEEEEeCCc---ccccc--ccCccCEEEEEec--CCEEEEEeC----CCeEEEEecCCCC--cceeee
Q 047728 123 LYTGSDS----KNIRVWKNQR---EFSGF--KSNSGLVKAIVIS--NEKIFSGHQ----DGKIRVWKVSSKD--ASIHKR 185 (474)
Q Consensus 123 l~tgs~d----g~v~vwd~~~---~~~~~--~~h~~~V~~i~~~--~~~l~s~~~----dg~i~vwd~~~~~--~~~~~~ 185 (474)
+++|+.. +.|.+|+... .+... .........++++ +++|++... +|.|..|+++... ......
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4555555 6788886421 11111 1123344556664 778888776 5789999988752 211111
Q ss_pred ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCC-cceeeee--eec
Q 047728 186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSD-YKCLESV--IAH 261 (474)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~-~~~~~~~--~~~ 261 (474)
. .........++++|++++|+++. .+|.|.++++.. +...... ..|
T Consensus 82 ~------------------------------~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~ 131 (345)
T PF10282_consen 82 V------------------------------PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH 131 (345)
T ss_dssp E------------------------------EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEES
T ss_pred e------------------------------ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeeccc
Confidence 1 01233456789999999999887 589999999986 4333221 111
Q ss_pred -----------CcceeEEEecCCC-eEEE-eeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728 262 -----------DDAVNSIVAGFDG-LVFT-GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS 328 (474)
Q Consensus 262 -----------~~~v~~v~~~~~~-~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 328 (474)
.....++.++|++ ++++ .-....|.+|++......... ............+.++|+|+++++++..
T Consensus 132 ~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-~~~~~~~~G~GPRh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 132 EGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP-VDSIKVPPGSGPRHLAFSPDGKYAYVVN 210 (345)
T ss_dssp EEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE-EEEEECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred CCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE-eeccccccCCCCcEEEEcCCcCEEEEec
Confidence 2346789999998 4444 444567999998755422111 1222335567789999999999887665
Q ss_pred -CCCcEEEeecC--cccc-cceeee-------ec-ceeeEEEEecCCEEEEEe-CCCcEEEEECC--CCceEEEEeecCC
Q 047728 329 -SDGLVNFWERE--LNLS-HGGVLR-------GH-KLAILCLVTAGNLVFSGS-ADMSICIWRRK--ENEHICLSMLTGH 393 (474)
Q Consensus 329 -~dg~i~v~d~~--~~~~-~~~~~~-------~~-~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~--~~~~~~~~~~~~h 393 (474)
.++.|.+|++. .+.. ..+... +. ...-+.++++|++|+++. .++.|.+|++. ++....+..+...
T Consensus 211 e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~ 290 (345)
T PF10282_consen 211 ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG 290 (345)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES
T ss_pred CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC
Confidence 46789999887 2211 111111 11 234578899999988876 56789999994 3454444454443
Q ss_pred ccceEEEEEeeCCccccccceEEEE-EecCCCcEEEEEccC
Q 047728 394 SGPVKCLAVEKDDESLSREKRWILY-SGSLDKSVKMWRVSE 433 (474)
Q Consensus 394 ~~~v~~l~~~~~~~~~~~~~~~~l~-s~s~Dg~i~vw~~~~ 433 (474)
....+.++++|+++ +|+ +...++.|.+|++..
T Consensus 291 G~~Pr~~~~s~~g~--------~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 291 GKFPRHFAFSPDGR--------YLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp SSSEEEEEE-TTSS--------EEEEEETTTTEEEEEEEET
T ss_pred CCCccEEEEeCCCC--------EEEEEecCCCeEEEEEEeC
Confidence 44579999999998 555 445778999999864
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.36 E-value=9.3e-11 Score=100.22 Aligned_cols=150 Identities=13% Similarity=0.180 Sum_probs=100.9
Q ss_pred eEEEecCCC--eEEEee---------CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE--cCCCc
Q 047728 266 NSIVAGFDG--LVFTGS---------ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG--SSDGL 332 (474)
Q Consensus 266 ~~v~~~~~~--~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~--~~dg~ 332 (474)
..+.|+++| +++... .-+...+|.++..... .........++|.+++|+|+++.|++. ..+..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~----~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP----VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc----cceeeccCCCceEEEEECcCCCEEEEEEccCCcc
Confidence 356788888 333332 1234666666433321 112222334569999999999987654 46779
Q ss_pred EEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC---CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccc
Q 047728 333 VNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD---MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL 409 (474)
Q Consensus 333 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 409 (474)
|.+||++.. .+ ..+.......+.++|+|++|++++.+ |.|.+||+++.+. +.... | ..++.++|+|+|+
T Consensus 85 v~lyd~~~~-~i-~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~--i~~~~-~-~~~t~~~WsPdGr-- 156 (194)
T PF08662_consen 85 VTLYDVKGK-KI-FSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK--ISTFE-H-SDATDVEWSPDGR-- 156 (194)
T ss_pred cEEEcCccc-Ee-EeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE--eeccc-c-CcEEEEEEcCCCC--
Confidence 999999732 22 23334445568899999999998744 6799999997663 33333 3 3478999999999
Q ss_pred cccceEEEEEecC------CCcEEEEEccC
Q 047728 410 SREKRWILYSGSL------DKSVKMWRVSE 433 (474)
Q Consensus 410 ~~~~~~~l~s~s~------Dg~i~vw~~~~ 433 (474)
+|+++.. |..++||++..
T Consensus 157 ------~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 157 ------YLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred ------EEEEEEeccceeccccEEEEEecC
Confidence 7887764 78899999864
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=8.1e-10 Score=107.64 Aligned_cols=194 Identities=13% Similarity=0.061 Sum_probs=118.3
Q ss_pred ccCCeeEEEecCCCCEEEEEECC---CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eE-EEeeCCCc--EEEEEcc
Q 047728 219 HFDAISSLSMSEDQNLLYSASWD---KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTGSADGT--VKVWRRE 291 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~~~dg~--i~iwd~~ 291 (474)
+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +....+......|+||+ .| ++.+.+|. |.++|+.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 56678899999999998876543 258899998876432 22223344578999999 44 45666776 5666665
Q ss_pred cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CC--cEEEeecCcccccceeeeecceeeEEEEecCCEEEEE
Q 047728 292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DG--LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG 368 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg 368 (474)
.+. ...+..+.......+|+|+++.|+..+. ++ .|.++|+.++....-...+......+++++|++|+..
T Consensus 295 tg~-------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 295 TKA-------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred CCC-------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEE
Confidence 332 1222333445677899999998876553 34 4666677655432212223333335789999988776
Q ss_pred eC-CC--cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCc--EEEEEc
Q 047728 369 SA-DM--SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKS--VKMWRV 431 (474)
Q Consensus 369 s~-dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~--i~vw~~ 431 (474)
+. ++ .|.++|+.+++... +... .......|+|+++. ++++...++. +.+++.
T Consensus 368 ~~~~g~~~I~~~dl~~g~~~~---lt~~-~~d~~ps~spdG~~-------I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAMQV---LTST-RLDESPSVAPNGTM-------VIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred EecCCceEEEEEECCCCCeEE---ccCC-CCCCCceECCCCCE-------EEEEEecCCceEEEEEEC
Confidence 54 34 45567877776432 2221 11224579999983 4445555554 555565
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.36 E-value=5e-10 Score=109.17 Aligned_cols=186 Identities=16% Similarity=0.099 Sum_probs=121.4
Q ss_pred ccCCeeEEEecCCCCEEEEEECC---CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eE-EEeeCCC--cEEEEEcc
Q 047728 219 HFDAISSLSMSEDQNLLYSASWD---KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTGSADG--TVKVWRRE 291 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~~~dg--~i~iwd~~ 291 (474)
+...+...+|+|++++|+.+..+ ..|++||+.+++... +..+...+.++.|+|++ .| ++.+.++ .|.+||+.
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 55568888999999999887654 479999998876533 33455667788999998 44 4455555 47777876
Q ss_pred cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CC--cEEEeecCcccccceeeeecceeeEEEEecCCEEEEE
Q 047728 292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DG--LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG 368 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg 368 (474)
.... ..+..+........|+|+++.|+..+. ++ .|+++|+.++........+.......+++++++++.+
T Consensus 267 ~~~~-------~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 267 GKQL-------TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred CCCE-------EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEE
Confidence 4321 222233334456789999998876554 33 5777787765432111222333346788899999988
Q ss_pred eCCC---cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC
Q 047728 369 SADM---SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424 (474)
Q Consensus 369 s~dg---~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg 424 (474)
+.++ .|.+||+.++... .+... .......|+|+++ .|+..+.++
T Consensus 340 ~~~~~~~~i~~~d~~~~~~~---~l~~~-~~~~~p~~spdg~--------~l~~~~~~~ 386 (417)
T TIGR02800 340 HREGGGFNIAVMDLDGGGER---VLTDT-GLDESPSFAPNGR--------MILYATTRG 386 (417)
T ss_pred EccCCceEEEEEeCCCCCeE---EccCC-CCCCCceECCCCC--------EEEEEEeCC
Confidence 8776 7899999876532 22222 2234568999998 555555443
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=2.8e-09 Score=100.47 Aligned_cols=239 Identities=16% Similarity=0.206 Sum_probs=146.8
Q ss_pred cCCeeEEEecCCCCEEEEEEC----CCcEEEEEcCCc--c--eeeeeeecCcceeEEEecCCC-eEEEee-CCCcEEEEE
Q 047728 220 FDAISSLSMSEDQNLLYSASW----DKTFKVWRTSDY--K--CLESVIAHDDAVNSIVAGFDG-LVFTGS-ADGTVKVWR 289 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~----dg~i~iwd~~~~--~--~~~~~~~~~~~v~~v~~~~~~-~l~~~~-~dg~i~iwd 289 (474)
......++++|++++|+++.+ ++.|..|++... + .+............+++++++ .|+++. .+|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345667889999999999987 468999988754 2 333344345566789999999 555554 589999999
Q ss_pred cccCCCceeeeeeeee--------ecccccEEEEEEcCCCCEEEEEcC-CCcEEEeecCcccc-cc-----eeeeeccee
Q 047728 290 RELQGKGTKHFFSQTL--------LKQECAVTALAISPDAAIVYCGSS-DGLVNFWERELNLS-HG-----GVLRGHKLA 354 (474)
Q Consensus 290 ~~~~~~~~~~~~~~~~--------~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~~~-~~-----~~~~~~~~~ 354 (474)
+............... ........++.++|+++++++... ...|.+|+++.... +. ....+....
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 9865332221111110 123456889999999998887643 45799999876541 11 112223344
Q ss_pred eEEEEecCCEEEEEe-CCCcEEEEECC--CCceEEEEeecCC------ccceEEEEEeeCCccccccceEEEEEecCCCc
Q 047728 355 ILCLVTAGNLVFSGS-ADMSICIWRRK--ENEHICLSMLTGH------SGPVKCLAVEKDDESLSREKRWILYSGSLDKS 425 (474)
Q Consensus 355 v~~~~~~~~~l~sgs-~dg~i~iwd~~--~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~ 425 (474)
-+.|+++++++++.. .++.|.+|++. .+....+...... ......|+++||++. +.++.-.+.+
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~-------lyvsnr~~~s 268 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRF-------LYVSNRGSNS 268 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE-------EEEEECTTTE
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCE-------EEEEeccCCE
Confidence 588999999887665 57889999998 4443333333211 125788999999983 4445556788
Q ss_pred EEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728 426 VKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 426 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
|.+|++......+ .....+......+..+ +++|||++|..
T Consensus 269 I~vf~~d~~~g~l---~~~~~~~~~G~~Pr~~----~~s~~g~~l~V 308 (345)
T PF10282_consen 269 ISVFDLDPATGTL---TLVQTVPTGGKFPRHF----AFSPDGRYLYV 308 (345)
T ss_dssp EEEEEECTTTTTE---EEEEEEEESSSSEEEE----EE-TTSSEEEE
T ss_pred EEEEEEecCCCce---EEEEEEeCCCCCccEE----EEeCCCCEEEE
Confidence 9999995432111 1222222222234555 77999998864
No 243
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.35 E-value=2.5e-09 Score=102.60 Aligned_cols=268 Identities=13% Similarity=0.097 Sum_probs=163.2
Q ss_pred EEEcCCEEEEeeCCCcEEEEeC--CccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccc
Q 047728 116 LAAAGDLLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFK 193 (474)
Q Consensus 116 ~~~~~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 193 (474)
....++.+++++.+|.|..+|. ++.+-.+.............++.++.++.+|.+..+|.++++.........
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----- 135 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS----- 135 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-----
Confidence 3445888999999999999984 344333333322223445568899999999999999999887654332210
Q ss_pred eeeeeecCCCCeEEEeeeccceeeeccCCeeE-EEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcce-----eE
Q 047728 194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS-LSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV-----NS 267 (474)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~ 267 (474)
.+.+ ..+ .+..++.++.++.|..||.++++.+..+....... ..
T Consensus 136 ----------------------------~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~s 185 (377)
T TIGR03300 136 ----------------------------EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSAS 185 (377)
T ss_pred ----------------------------eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCC
Confidence 1111 111 24567778889999999999999877765432211 11
Q ss_pred EEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccc--ccEEEEEEcC--CCCEEEEEcCCCcEEEeecCcccc
Q 047728 268 IVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQE--CAVTALAISP--DAAIVYCGSSDGLVNFWERELNLS 343 (474)
Q Consensus 268 v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~v~~l~~~~--~~~~l~~~~~dg~i~v~d~~~~~~ 343 (474)
.... ++.++.+..+|.+..+|.+.+.......... ..... ..+..+.-+| .+..+++++.+|.+..||.++++.
T Consensus 186 p~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~-~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~ 263 (377)
T TIGR03300 186 PVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVAL-PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV 263 (377)
T ss_pred CEEE-CCEEEEECCCCEEEEEEccCCCEeeeecccc-CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE
Confidence 1122 3577888889999999987654321110000 00000 0000011111 356788888999999999988755
Q ss_pred cceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCcc-ceEEEEEeeCCccccccceEEEEEecC
Q 047728 344 HGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG-PVKCLAVEKDDESLSREKRWILYSGSL 422 (474)
Q Consensus 344 ~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~~~~l~s~s~ 422 (474)
...... .........+..++.++.||.|..+|..+++.. ........ ....... .+. .|++++.
T Consensus 264 ~W~~~~---~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~--W~~~~~~~~~~ssp~i--~g~--------~l~~~~~ 328 (377)
T TIGR03300 264 LWKRDA---SSYQGPAVDDNRLYVTDADGVVVALDRRSGSEL--WKNDELKYRQLTAPAV--VGG--------YLVVGDF 328 (377)
T ss_pred EEeecc---CCccCceEeCCEEEEECCCCeEEEEECCCCcEE--EccccccCCccccCEE--ECC--------EEEEEeC
Confidence 432221 112233346788899999999999999988732 22211111 1122222 233 6888999
Q ss_pred CCcEEEEEccCCC
Q 047728 423 DKSVKMWRVSEQA 435 (474)
Q Consensus 423 Dg~i~vw~~~~~~ 435 (474)
||.|.++|..+++
T Consensus 329 ~G~l~~~d~~tG~ 341 (377)
T TIGR03300 329 EGYLHWLSREDGS 341 (377)
T ss_pred CCEEEEEECCCCC
Confidence 9999999998874
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=2.7e-10 Score=113.05 Aligned_cols=184 Identities=18% Similarity=0.196 Sum_probs=140.7
Q ss_pred EEEcCCEEEEeeCCCcEEEEeCCccccccc-cCccCEE--EEE---ec--CCEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728 116 LAAAGDLLYTGSDSKNIRVWKNQREFSGFK-SNSGLVK--AIV---IS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVG 187 (474)
Q Consensus 116 ~~~~~~~l~tgs~dg~v~vwd~~~~~~~~~-~h~~~V~--~i~---~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 187 (474)
+.+....++.++.+..+.+||........+ .+...+. ++. .+ .=++++|+.-+.|.+|+....+..
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p------ 168 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP------ 168 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc------
Confidence 334467888888899999998553322221 2222211 111 11 338999999999999998732211
Q ss_pred ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee-eeeecCccee
Q 047728 188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE-SVIAHDDAVN 266 (474)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~ 266 (474)
..+.+|.+.|.++.++.||.+++++++|.++++|++.+.+... ..-+|...|+
T Consensus 169 --------------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw 222 (967)
T KOG0974|consen 169 --------------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW 222 (967)
T ss_pred --------------------------ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeE
Confidence 1245699999999999999999999999999999999988776 6678999999
Q ss_pred EEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc-cccEEEEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728 267 SIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ-ECAVTALAISPDAAIVYCGSSDGLVNFWERE 339 (474)
Q Consensus 267 ~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~ 339 (474)
.+++.|. .+++++.|.+.++|+.+... .....+| ...+..++..++...+++++.|+.+++||+.
T Consensus 223 ~~~~~~n-~i~t~gedctcrvW~~~~~~-------l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 223 ACCFLPN-RIITVGEDCTCRVWGVNGTQ-------LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEEeccc-eeEEeccceEEEEEecccce-------ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 9999988 99999999999999655221 1233444 4579999999999999999999999999964
No 245
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=8e-12 Score=129.56 Aligned_cols=192 Identities=19% Similarity=0.262 Sum_probs=148.9
Q ss_pred ccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCC
Q 047728 145 KSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDA 222 (474)
Q Consensus 145 ~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 222 (474)
+.+-..|.++.-+ ..+.+||+.||.|++|....++.+...+.. -...
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-------------------------------g~s~ 2253 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-------------------------------GNSR 2253 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-------------------------------Ccch
Confidence 3445556666555 458899999999999999888766544332 2267
Q ss_pred eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEe---eCCCcEEEEEcccCCCceee
Q 047728 223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTG---SADGTVKVWRRELQGKGTKH 299 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~ 299 (474)
|+.+.|+.+|+.+..+..||.+.+|.+. .+.....+.|.....++.|-. ..++++ +.++.+.+||........
T Consensus 2254 vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s-- 2329 (2439)
T KOG1064|consen 2254 VTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNS-- 2329 (2439)
T ss_pred hhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccc--
Confidence 8999999999999999999999999986 567777788998888888876 344444 346889999976544321
Q ss_pred eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEEC
Q 047728 300 FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRR 379 (474)
Q Consensus 300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~ 379 (474)
+.. ..|.+.++++++-|..+.|++|+.+|.|++||++..+....+.. +. ...++++|+..|.|+||++
T Consensus 2330 -~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2330 -LVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred -eee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEc
Confidence 222 78999999999999999999999999999999987655432222 33 5679999999999999999
Q ss_pred CCCc
Q 047728 380 KENE 383 (474)
Q Consensus 380 ~~~~ 383 (474)
....
T Consensus 2398 s~~~ 2401 (2439)
T KOG1064|consen 2398 SEFG 2401 (2439)
T ss_pred cccc
Confidence 8664
No 246
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=2.7e-10 Score=105.86 Aligned_cols=242 Identities=16% Similarity=0.214 Sum_probs=160.9
Q ss_pred cCccCEEEEEec--CCE-EEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCC
Q 047728 146 SNSGLVKAIVIS--NEK-IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDA 222 (474)
Q Consensus 146 ~h~~~V~~i~~~--~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 222 (474)
.+....+.|..+ |+| +++|..--.|++||+..-........ ....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl--------------------------------Dae~ 96 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL--------------------------------DAEV 96 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc--------------------------------cccc
Confidence 467777778777 555 66777888999999987544321110 1223
Q ss_pred eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeee
Q 047728 223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFF 301 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~ 301 (474)
|.-.-++.|-..++--..|.+|-+.... |.. ..+.- ...-..++++.-. -|+.++....|+-++++.+. +
T Consensus 97 V~feiLsDD~SK~v~L~~DR~IefHak~-G~h-y~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr------f 167 (703)
T KOG2321|consen 97 VDFEILSDDYSKSVFLQNDRTIEFHAKY-GRH-YRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR------F 167 (703)
T ss_pred eeEEEeccchhhheEeecCceeeehhhc-Cee-eeeec-CcCCccccccCCCccEEEeecCcceEEEEccccc------c
Confidence 4444455555555555667777665322 111 11111 1223455555444 56666777778888887654 4
Q ss_pred eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-----cc-----eeeEEEEe--cCCEEEEEe
Q 047728 302 SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-----HK-----LAILCLVT--AGNLVFSGS 369 (474)
Q Consensus 302 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----~~-----~~v~~~~~--~~~~l~sgs 369 (474)
+..+......++++.+++...+|++|+.+|.|.+||.+.......+... |. ..+.++.+ +|-.+++|+
T Consensus 168 L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt 247 (703)
T KOG2321|consen 168 LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT 247 (703)
T ss_pred ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec
Confidence 5666677789999999999999999999999999999877554433222 22 23566665 578999999
Q ss_pred CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 370 ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 370 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
.+|.|.|||++..++. +..-.+..-+|..+.|.+.+... .|+|. +...++|||-.++++
T Consensus 248 s~G~v~iyDLRa~~pl-~~kdh~~e~pi~~l~~~~~~~q~------~v~S~-Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 248 STGSVLIYDLRASKPL-LVKDHGYELPIKKLDWQDTDQQN------KVVSM-DKRILKIWDECTGKP 306 (703)
T ss_pred cCCcEEEEEcccCCce-eecccCCccceeeecccccCCCc------eEEec-chHHhhhcccccCCc
Confidence 9999999999998865 33334455689999998773311 46665 456899999988854
No 247
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.34 E-value=1.2e-10 Score=101.56 Aligned_cols=265 Identities=14% Similarity=0.246 Sum_probs=165.4
Q ss_pred cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728 146 SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI 223 (474)
Q Consensus 146 ~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 223 (474)
....-|.+|.|+ |++|+||..+|.|.++.-+..... ........+ ..-..-.|+ .-..-...|
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fq------shepEFDYL--------kSleieEKi 87 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQ------SHEPEFDYL--------KSLEIEEKI 87 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeee------ccCcccchh--------hhhhhhhhh
Confidence 345678899997 999999999999999976554321 000000000 000000000 001234568
Q ss_pred eEEEecCCC--CEEEEEECCCcEEEEEcCCcceee-----------------------------------ee-eecCcce
Q 047728 224 SSLSMSEDQ--NLLYSASWDKTFKVWRTSDYKCLE-----------------------------------SV-IAHDDAV 265 (474)
Q Consensus 224 ~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~-----------------------------------~~-~~~~~~v 265 (474)
..+.|.+++ ..++..+.|.+|++|.+....... .+ .+|.--|
T Consensus 88 nkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhi 167 (433)
T KOG1354|consen 88 NKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHI 167 (433)
T ss_pred hhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEe
Confidence 889998854 567777899999999875321100 00 2477778
Q ss_pred eEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeee--eeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCccc
Q 047728 266 NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFF--SQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNL 342 (474)
Q Consensus 266 ~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~ 342 (474)
+++.++.|...+....|=.|.+|+++.....-...- ......-...|++..|+| ..+.++-.++.|+|++.|++...
T Consensus 168 NSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a 247 (433)
T KOG1354|consen 168 NSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA 247 (433)
T ss_pred eeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence 899999888666667788999999875443211111 111122345689999999 56778888999999999998542
Q ss_pred ccce---eee----e--------cceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCc-----------
Q 047728 343 SHGG---VLR----G--------HKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHS----------- 394 (474)
Q Consensus 343 ~~~~---~~~----~--------~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~----------- 394 (474)
.... ++. + --..| +.|+.+|+|+++-+. -+|++||+..... ++.+..-|.
T Consensus 248 LCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~-pv~t~~vh~~lr~kLc~lYE 325 (433)
T KOG1354|consen 248 LCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAK-PVETYPVHEYLRSKLCSLYE 325 (433)
T ss_pred hhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCC-cceEEeehHhHHHHHHHHhh
Confidence 1111 100 0 00112 556678999988753 5899999954322 234444443
Q ss_pred -cce---EEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 395 -GPV---KCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 395 -~~v---~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
..| ..++|+-++. +++||+....++++++..+.
T Consensus 326 nD~IfdKFec~~sg~~~--------~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 326 NDAIFDKFECSWSGNDS--------YVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ccchhheeEEEEcCCcc--------eEecccccceEEEecCCCCc
Confidence 122 4578888888 89999999999999976553
No 248
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.30 E-value=2.4e-09 Score=93.14 Aligned_cols=289 Identities=12% Similarity=0.153 Sum_probs=175.5
Q ss_pred cEEEEEEc--CC-EEEEeeCCCcEEEEeCCcc--ccccccCccCEEEEEec--C-CEEEEEeCCCeEEEEecCCCCccee
Q 047728 112 HIYSLAAA--GD-LLYTGSDSKNIRVWKNQRE--FSGFKSNSGLVKAIVIS--N-EKIFSGHQDGKIRVWKVSSKDASIH 183 (474)
Q Consensus 112 ~i~~~~~~--~~-~l~tgs~dg~v~vwd~~~~--~~~~~~h~~~V~~i~~~--~-~~l~s~~~dg~i~vwd~~~~~~~~~ 183 (474)
.|.-+.+. .. .|.....|+.|.+|++.+. ...+....+.+.++.|+ + ..|.+...|-.|.||.+.+......
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~ 129 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL 129 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence 34445554 33 4556678999999996544 45566778889999998 4 3677888999999999998765432
Q ss_pred eeecccCccceeeeeecC-CCCeEEEeeecc----------------ceeeeccCCeeEEEecCCCCEEEEEECCCcEEE
Q 047728 184 KRVGTLPTFKDFIKCSMK-PSNYIEVRRHRN----------------GLWIKHFDAISSLSMSEDQNLLYSASWDKTFKV 246 (474)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i 246 (474)
.-..... -...+. ...+..+..++. +.+.-.+-..+.+.|+|||..|+ +
T Consensus 130 ~~pK~~~-----kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------V 195 (447)
T KOG4497|consen 130 PHPKTNV-----KGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------V 195 (447)
T ss_pred cccccCc-----eeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE---------E
Confidence 2111100 000111 111111111111 01112233456677777766554 4
Q ss_pred EEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEccc---------------CC----------------
Q 047728 247 WRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRREL---------------QG---------------- 294 (474)
Q Consensus 247 wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~---------------~~---------------- 294 (474)
||.--.-.+..+ .-.-.+..+.|+|.+ .+++|+.|+.+|+.+--+ ..
T Consensus 196 wd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~ 274 (447)
T KOG4497|consen 196 WDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLH 274 (447)
T ss_pred ecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcc
Confidence 442111111111 123467889999977 899999999998763110 00
Q ss_pred ----------------Cc-------------eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC--CcEEEeecCcccc
Q 047728 295 ----------------KG-------------TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD--GLVNFWERELNLS 343 (474)
Q Consensus 295 ----------------~~-------------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--g~i~v~d~~~~~~ 343 (474)
.. ....+..........+--++|++|..++++-... +.+-+||++..+.
T Consensus 275 ~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l 354 (447)
T KOG4497|consen 275 HCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL 354 (447)
T ss_pred cccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh
Confidence 00 0000001111223457789999999999886543 5789999998776
Q ss_pred cceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC
Q 047728 344 HGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD 423 (474)
Q Consensus 344 ~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D 423 (474)
.......|......+.|....|+.+.....+++|...... ++. .....-.|..++|..++. .++-.+.|
T Consensus 355 ~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~--~V~-vP~~GF~i~~l~W~~~g~--------~i~l~~kD 423 (447)
T KOG4497|consen 355 HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR--VVG-VPKKGFNIQKLQWLQPGE--------FIVLCGKD 423 (447)
T ss_pred hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCce--EEe-cCCCCceeeeEEecCCCc--------EEEEEcCC
Confidence 6556666666666677777788888878889999887644 232 233336799999999999 78888888
Q ss_pred CcE
Q 047728 424 KSV 426 (474)
Q Consensus 424 g~i 426 (474)
...
T Consensus 424 afc 426 (447)
T KOG4497|consen 424 AFC 426 (447)
T ss_pred ceE
Confidence 643
No 249
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=7.8e-10 Score=105.43 Aligned_cols=263 Identities=12% Similarity=0.058 Sum_probs=176.9
Q ss_pred CcEEEEEEc--CCEEEEeeCCCcEEEEeCCc-----------------cccccccCccCEEEEEec--CCEEEEEeCCCe
Q 047728 111 GHIYSLAAA--GDLLYTGSDSKNIRVWKNQR-----------------EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGK 169 (474)
Q Consensus 111 ~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~-----------------~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~ 169 (474)
....|++++ ..++|.|+.||.++|.+++. .-+++.+|.+.|..+.|+ .+.|-|...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 456788888 67999999999999996431 124578999999999998 568999999999
Q ss_pred EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728 170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT 249 (474)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~ 249 (474)
|.||-+-.+...... +-......|.+++|+.+|..++..-.||.|.+=.+
T Consensus 95 IiVWmlykgsW~EEM------------------------------iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEM------------------------------INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred EEEEeeecccHHHHH------------------------------hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 999998776532111 00125567899999999999999999999988766
Q ss_pred CCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC--cee---eeeeeeeecccccEEEEEEc-----
Q 047728 250 SDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK--GTK---HFFSQTLLKQECAVTALAIS----- 318 (474)
Q Consensus 250 ~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~--~~~---~~~~~~~~~~~~~v~~l~~~----- 318 (474)
... .+..-.........+.|++|. .++.+-..|.++++|....-. ... ......+......|..+.|.
T Consensus 145 dGN-RIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~ 223 (1189)
T KOG2041|consen 145 DGN-RIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ 223 (1189)
T ss_pred ccc-eecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence 432 222111112234578899998 777788899999998652110 000 00111111122235555554
Q ss_pred ---CCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC---------CcEEEEECCCCceEE
Q 047728 319 ---PDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD---------MSICIWRRKENEHIC 386 (474)
Q Consensus 319 ---~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d---------g~i~iwd~~~~~~~~ 386 (474)
|+...|+++...|.+.+..-.+...+.-+-.+....-..++++|..|+.++.| +.|++|..-.. .
T Consensus 224 ~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~---i 300 (1189)
T KOG2041|consen 224 PVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGH---I 300 (1189)
T ss_pred cCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchh---h
Confidence 47789999999999998766555444444444444445677789999988754 35666654432 2
Q ss_pred EEeecCCccceEEEEEeeCCc
Q 047728 387 LSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 387 ~~~~~~h~~~v~~l~~~~~~~ 407 (474)
+.+++.....|++++|...+-
T Consensus 301 ~gtlkvpg~~It~lsWEg~gL 321 (1189)
T KOG2041|consen 301 VGTLKVPGSCITGLSWEGTGL 321 (1189)
T ss_pred eEEEecCCceeeeeEEcCCce
Confidence 455666667788888876654
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.30 E-value=3.7e-09 Score=97.23 Aligned_cols=300 Identities=12% Similarity=0.088 Sum_probs=185.1
Q ss_pred EEEEEcCCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEEEeCCC---------------eEEEEecC
Q 047728 114 YSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDG---------------KIRVWKVS 176 (474)
Q Consensus 114 ~~~~~~~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg---------------~i~vwd~~ 176 (474)
.+++|.|.+|++....| |.+|.....-....--...|..+.|+ +.+|.+=+..+ .+.+||..
T Consensus 38 ~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~ 116 (561)
T COG5354 38 VSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA 116 (561)
T ss_pred eeecCcchheehhhccc-eEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc
Confidence 34566688988887765 88997432222222223457777777 56777755443 48999999
Q ss_pred CCCcceeeeecccCccce-eeeeecCCCCeEEEeeeccceee------e------ccCCeeEEEecCCC--CEEEE----
Q 047728 177 SKDASIHKRVGTLPTFKD-FIKCSMKPSNYIEVRRHRNGLWI------K------HFDAISSLSMSEDQ--NLLYS---- 237 (474)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~------h~~~V~~l~~~~~~--~~l~s---- 237 (474)
++..+........+...- ++....+..-..++......+.. . ....|....|+|.+ ..|+.
T Consensus 117 sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPE 196 (561)
T COG5354 117 SGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPE 196 (561)
T ss_pred CceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccc
Confidence 998876665554442222 22222221111111111111100 0 12457888899853 34443
Q ss_pred -EECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEe---e-------CCCcEEEEEcccCCCceeeeeeee
Q 047728 238 -ASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTG---S-------ADGTVKVWRRELQGKGTKHFFSQT 304 (474)
Q Consensus 238 -~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~---~-------~dg~i~iwd~~~~~~~~~~~~~~~ 304 (474)
.+.++.+++|.+..+..+.+-.-..-.=..+.|.+.| +++-. . ....+.|++++... ...
T Consensus 197 k~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-------i~V 269 (561)
T COG5354 197 KLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-------IPV 269 (561)
T ss_pred cCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-------cce
Confidence 3567899999998776665544333334567788877 22211 1 12457788776322 122
Q ss_pred eecccccEEEEEEcCCCCEEEEE--cCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC---CcEEEEEC
Q 047728 305 LLKQECAVTALAISPDAAIVYCG--SSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD---MSICIWRR 379 (474)
Q Consensus 305 ~~~~~~~v~~l~~~~~~~~l~~~--~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d---g~i~iwd~ 379 (474)
.....++|...+|.|.++.+++. -.+..+.++|++.+ +..........-..|+|.+++++.++-| |.|.+||.
T Consensus 270 ~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 270 EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred eccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEecc
Confidence 22567899999999988776654 47888999999877 3344445556667789999999987755 78999998
Q ss_pred CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEec------CCCcEEEEEccCC
Q 047728 380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS------LDKSVKMWRVSEQ 434 (474)
Q Consensus 380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s------~Dg~i~vw~~~~~ 434 (474)
.+.- .+...+.+- ...-+.|+|+++ ++.+.. .|..|+||++...
T Consensus 348 ~~rf-~~~~~~~~~--n~s~~~wspd~q--------F~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 348 AGRF-KVAGAFNGL--NTSYCDWSPDGQ--------FYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred CCce-EEEEEeecC--CceEeeccCCce--------EEEecCCCcccccCcceEEEEecCc
Confidence 7654 234355443 345578999998 555543 4789999999764
No 251
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.30 E-value=4.1e-09 Score=101.18 Aligned_cols=263 Identities=14% Similarity=0.092 Sum_probs=156.8
Q ss_pred EEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccc
Q 047728 116 LAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFK 193 (474)
Q Consensus 116 ~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 193 (474)
...+++.++.++.+|.|..+|.. +.+................++.++.+..+|.|..||..+++............
T Consensus 101 p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~-- 178 (377)
T TIGR03300 101 VGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL-- 178 (377)
T ss_pred eEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce--
Confidence 34457788889999999999853 33322222221112223347788888999999999999887655433211000
Q ss_pred eeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCc----------
Q 047728 194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD---------- 263 (474)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---------- 263 (474)
.+.... +..+. +..++.+..++.+..+|.++++.+........
T Consensus 179 ---------------------~~~~~~----sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~ 231 (377)
T TIGR03300 179 ---------------------TLRGSA----SPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV 231 (377)
T ss_pred ---------------------eecCCC----CCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh
Confidence 000000 11111 24677888889999999999987655431100
Q ss_pred ce-eEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc
Q 047728 264 AV-NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL 342 (474)
Q Consensus 264 ~v-~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~ 342 (474)
.+ ....+ .++.+++++.+|.+..||.+.++..... . . ....... ..+..+++++.+|.+..+|..++.
T Consensus 232 ~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~----~---~-~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 232 DVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKR----D---A-SSYQGPA--VDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred ccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEee----c---c-CCccCce--EeCCEEEEECCCCeEEEEECCCCc
Confidence 01 11112 2457888889999999998765421111 0 1 1111111 246778888999999999998876
Q ss_pred ccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC
Q 047728 343 SHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL 422 (474)
Q Consensus 343 ~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~ 422 (474)
.+.................+..|++++.+|.|+++|..+++. +..+..+...+..--...++ .|+.++.
T Consensus 301 ~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~--~~~~~~~~~~~~~sp~~~~~---------~l~v~~~ 369 (377)
T TIGR03300 301 ELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSF--VARLKTDGSGIASPPVVVGD---------GLLVQTR 369 (377)
T ss_pred EEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCE--EEEEEcCCCccccCCEEECC---------EEEEEeC
Confidence 543221111111122223578999999999999999998884 45555555444333333344 4778888
Q ss_pred CCcEEEE
Q 047728 423 DKSVKMW 429 (474)
Q Consensus 423 Dg~i~vw 429 (474)
||.|..|
T Consensus 370 dG~l~~~ 376 (377)
T TIGR03300 370 DGDLYAF 376 (377)
T ss_pred CceEEEe
Confidence 9998776
No 252
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.29 E-value=2.8e-10 Score=98.04 Aligned_cols=269 Identities=17% Similarity=0.244 Sum_probs=168.5
Q ss_pred ecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC-------ccccccccCc------------cCEEEEEec----CCEEEE
Q 047728 109 EEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ-------REFSGFKSNS------------GLVKAIVIS----NEKIFS 163 (474)
Q Consensus 109 h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~-------~~~~~~~~h~------------~~V~~i~~~----~~~l~s 163 (474)
....|+++.|+ |.||+||...|.|.+|... +-+..|++|. ..|..|.|- ...++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34568999998 8899999999999999633 2234466663 457777775 236777
Q ss_pred EeCCCeEEEEecCCCCcceeeeec-----------ccCccceeeeeecCCCCeEEEeeecccee-eeccCCeeEEEecCC
Q 047728 164 GHQDGKIRVWKVSSKDASIHKRVG-----------TLPTFKDFIKCSMKPSNYIEVRRHRNGLW-IKHFDAISSLSMSED 231 (474)
Q Consensus 164 ~~~dg~i~vwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~ 231 (474)
.+.|.+|++|.+.........+-. .+.....+...-.... ...+...+..++ ..|..-|.++.|+.|
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~h-d~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEH-DEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccccccc-ceEEEeccceeccccceeEeeeeeecCc
Confidence 889999999998765432211100 0000000000000111 111112222233 568888999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCcce---eeeeeec-----CcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceee--
Q 047728 232 QNLLYSASWDKTFKVWRTSDYKC---LESVIAH-----DDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKH-- 299 (474)
Q Consensus 232 ~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~-----~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~-- 299 (474)
...++++ .|=.|.+|++.-... +..++.| ..-|++..|+|.. .+...+..|.|++-|+++.......
T Consensus 184 ~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 8888876 467899998864322 2222333 2457788899886 7778889999999999843221100
Q ss_pred ee--------eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecc------------eee----
Q 047728 300 FF--------SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK------------LAI---- 355 (474)
Q Consensus 300 ~~--------~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~------------~~v---- 355 (474)
.. ...+.+....|..+.|+++|+++++-+. -+|++||.+....+.....-|. ..+
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 00 1111223456888999999999986544 5799999987766555543332 111
Q ss_pred -EEEEecCCEEEEEeCCCcEEEEECC
Q 047728 356 -LCLVTAGNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 356 -~~~~~~~~~l~sgs~dg~i~iwd~~ 380 (474)
..++-+...+++|+..+..-+|-..
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred EEEecCCcccccccccccceeeeccc
Confidence 3445567788899888887777643
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.26 E-value=5e-10 Score=97.86 Aligned_cols=238 Identities=21% Similarity=0.296 Sum_probs=176.9
Q ss_pred eeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC-Ccceeeeee-ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcc
Q 047728 215 LWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS-DYKCLESVI-AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRE 291 (474)
Q Consensus 215 ~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~-~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~ 291 (474)
.+.||.+.|++...-|-..-+++.+.|.+++||--+ .++.-..+. ....+++++.+.++. .|++|-..|++.-+.+.
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s 98 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS 98 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhh
Confidence 456799999999888888889999999999999533 344333332 235678889988888 89999999999988764
Q ss_pred cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC
Q 047728 292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD 371 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d 371 (474)
.. -.+.........|...+..+-|+-....+++.+.|..+..--.+.+..+......... .++..+-.+.+.|...
T Consensus 99 ed--fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~--t~~~~d~~~~fvGd~~ 174 (404)
T KOG1409|consen 99 ED--FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA--SALQFDALYAFVGDHS 174 (404)
T ss_pred hh--hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccC--CCCceeeEEEEecccc
Confidence 32 1223345667788999999999999999999999988776555555444333222211 1222222277788888
Q ss_pred CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCC
Q 047728 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHG 451 (474)
Q Consensus 372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 451 (474)
|.|.+-.+.......+..+.+|.+.+++++|.+... +|++|..|..|.+||+.-.. .....+.+|.
T Consensus 175 gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~--------~LfSg~~d~~vi~wdigg~~------g~~~el~gh~ 240 (404)
T KOG1409|consen 175 GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR--------LLFSGASDHSVIMWDIGGRK------GTAYELQGHN 240 (404)
T ss_pred cceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc--------EEEeccccCceEEEeccCCc------ceeeeeccch
Confidence 888888776665556889999999999999999988 99999999999999997653 4556778899
Q ss_pred CCCCccccCC------CCCcCCcee
Q 047728 452 VAPNSLPYAP------SFSSQGRIC 470 (474)
Q Consensus 452 ~~v~~l~~~p------~~s~Dg~~l 470 (474)
..|..+.+.+ +...||.+.
T Consensus 241 ~kV~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 241 DKVQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred hhhhhhhhhhhheeeeeccCCCeEE
Confidence 8898887765 446666654
No 254
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.26 E-value=1.3e-09 Score=93.31 Aligned_cols=210 Identities=14% Similarity=0.203 Sum_probs=136.3
Q ss_pred CCCcEEEEEcCCcceee--ee-eecCcceeEEEecC---CC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc
Q 047728 240 WDKTFKVWRTSDYKCLE--SV-IAHDDAVNSIVAGF---DG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA 311 (474)
Q Consensus 240 ~dg~i~iwd~~~~~~~~--~~-~~~~~~v~~v~~~~---~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 311 (474)
..|.+.+|++...+.+. ++ ......+..+.|.. ++ .++-+..+|.|.++..................-....
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 34678899887766544 11 12234455555543 22 5677788899999976533221111111111111123
Q ss_pred EEEEEEcCCCCEEEEEcCCCcEEEeecC-cccccceeeeecceeeEEEEe---cCCEEEEEeCCCcEEEEECCCCceEEE
Q 047728 312 VTALAISPDAAIVYCGSSDGLVNFWERE-LNLSHGGVLRGHKLAILCLVT---AGNLVFSGSADMSICIWRRKENEHICL 387 (474)
Q Consensus 312 v~~l~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~v~~~~~---~~~~l~sgs~dg~i~iwd~~~~~~~~~ 387 (474)
..++.|++.+..++++..+|.+.+-+.. ......+..+.|...+....+ +.+++++|+.|+.+..||++.......
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 5678899999999999999999854433 333333567778766654444 468999999999999999994432223
Q ss_pred EeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCC
Q 047728 388 SMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSF 463 (474)
Q Consensus 388 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~ 463 (474)
...+-|...|.++.-+|.... +++||+.|-.|++||.+....+..... ..+.|..+.++|.-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~-------~I~TGsYDe~i~~~DtRnm~kPl~~~~-------v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPT-------YIATGSYDECIRVLDTRNMGKPLFKAK-------VGGGVWRIKHHPEI 265 (339)
T ss_pred ecceeeecceEEEecCCCCCc-------eEEEeccccceeeeehhcccCccccCc-------cccceEEEEecchh
Confidence 336679999999988877554 899999999999999997654432211 22567777777753
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1e-09 Score=102.71 Aligned_cols=194 Identities=15% Similarity=0.276 Sum_probs=145.2
Q ss_pred CCCCEEEEEECCCcEEEEEcCCcceeeeeee---cCcceeEEEec--------------------CCC-eEEEeeCCCcE
Q 047728 230 EDQNLLYSASWDKTFKVWRTSDYKCLESVIA---HDDAVNSIVAG--------------------FDG-LVFTGSADGTV 285 (474)
Q Consensus 230 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~v~~v~~~--------------------~~~-~l~~~~~dg~i 285 (474)
|...++|....||.+++||...++....+.. -.+...+..|. .+. .++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998877665532 12233333332 122 78889999999
Q ss_pred EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecc--eeeEEEEecCC
Q 047728 286 KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK--LAILCLVTAGN 363 (474)
Q Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~~v~~~~~~~~ 363 (474)
.+|+...++. ........|.+.|.++.++.+-..|++++.|+.+..|+....... ....... ....|+++|+.
T Consensus 83 ~~ys~~~g~i----t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~-~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 83 LLYSVAGGEI----TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVII-RIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred EEEEecCCeE----EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceee-eeeccCCCccceEEEcCCCC
Confidence 9999875442 122344578999999999999999999999999999998876544 3333333 33478888999
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 364 LVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 364 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
.+++++ ++|++||+++++ .+..+.+|.++|.+++|-.+-. ...+.++|.+...+..|.+|-+...
T Consensus 158 ~l~~as--~~ik~~~~~~ke--vv~~ftgh~s~v~t~~f~~~~~--g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKE--VVITFTGHGSPVRTLSFTTLID--GIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred EEEecc--ceEEEEEccCce--EEEEecCCCcceEEEEEEEecc--ccccceeeeccccccceeEEEEEcc
Confidence 999887 679999999998 5789999999999999988711 0112237777778888999988763
No 256
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.24 E-value=2.8e-08 Score=93.73 Aligned_cols=299 Identities=10% Similarity=0.083 Sum_probs=165.9
Q ss_pred CcceeeeeeeeecC-cE-EEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEe-CCCeE
Q 047728 98 SPNVLIGSLVREEG-HI-YSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGH-QDGKI 170 (474)
Q Consensus 98 ~~~~~~~~l~~h~~-~i-~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~-~dg~i 170 (474)
...+.++.+..... ++ ..++++|+++++++.||.|.++|+. +.+..++... ....++++ +++++++. .++.+
T Consensus 24 ~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v 102 (369)
T PF02239_consen 24 ATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTV 102 (369)
T ss_dssp TT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEE
T ss_pred CCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCce
Confidence 33556666665433 22 3355679999999999999999955 4455555433 34567775 77777665 78999
Q ss_pred EEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-CCcEEEEEc
Q 047728 171 RVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-DKTFKVWRT 249 (474)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~iwd~ 249 (474)
.++|.++.+..........+. ......+..|..++....++..-. .+.|.+.|.
T Consensus 103 ~v~D~~tle~v~~I~~~~~~~-------------------------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 103 SVIDAETLEPVKTIPTGGMPV-------------------------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp EEEETTT--EEEEEE--EE-T-------------------------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred eEeccccccceeecccccccc-------------------------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence 999999887665443322110 003346778888888776665554 488888898
Q ss_pred CCcceee-eeeecCcceeEEEecCCC-e-EEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC------
Q 047728 250 SDYKCLE-SVIAHDDAVNSIVAGFDG-L-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD------ 320 (474)
Q Consensus 250 ~~~~~~~-~~~~~~~~v~~v~~~~~~-~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~------ 320 (474)
...+.+. .............|.|++ + +++...+..|-++|....... .........|..++..+ .+|.
T Consensus 158 ~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v--~~i~~g~~p~~~~~~~~-php~~g~vw~ 234 (369)
T PF02239_consen 158 SDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV--ALIDTGKKPHPGPGANF-PHPGFGPVWA 234 (369)
T ss_dssp TTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE--EEEE-SSSBEETTEEEE-EETTTEEEEE
T ss_pred ccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEE--EEeeccccccccccccc-cCCCcceEEe
Confidence 7765432 222345567788999998 4 455667788999997753221 11111112233333322 1221
Q ss_pred ----CCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEE----eCCCcEEEEECCCCceEEEEeecC
Q 047728 321 ----AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG----SADMSICIWRRKENEHICLSMLTG 392 (474)
Q Consensus 321 ----~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg----s~dg~i~iwd~~~~~~~~~~~~~~ 392 (474)
+...++.-....+.+||....+....+......--+..+|+++++++. ...++|.++|.++.+ .+..+..
T Consensus 235 ~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~--~~~~i~~ 312 (369)
T PF02239_consen 235 TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK--VVKTITP 312 (369)
T ss_dssp EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE--EEE-HHH
T ss_pred eccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcc--eeEEEec
Confidence 222212222234556777776665544443333445678999999998 455899999999885 2344432
Q ss_pred C-ccceEEEEEeeCCccccccceEEEEEe-cCCCcEEEEEccCC
Q 047728 393 H-SGPVKCLAVEKDDESLSREKRWILYSG-SLDKSVKMWRVSEQ 434 (474)
Q Consensus 393 h-~~~v~~l~~~~~~~~~~~~~~~~l~s~-s~Dg~i~vw~~~~~ 434 (474)
. ...+..+.|+++|+. +.+|. ..++.|.|||..+.
T Consensus 313 ~~~~~~~h~ef~~dG~~-------v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 313 GPGKRVVHMEFNPDGKE-------VWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp HHT--EEEEEE-TTSSE-------EEEEEE--TTEEEEEETTTT
T ss_pred cCCCcEeccEECCCCCE-------EEEEEecCCCEEEEEECCCc
Confidence 2 235899999999984 33333 34448999999886
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.24 E-value=1.1e-09 Score=102.43 Aligned_cols=183 Identities=16% Similarity=0.250 Sum_probs=143.1
Q ss_pred CCEEEEeeCCCcEEEEeCC--cc---ccccccCccCEEEEEec----------------------CCEEEEEeCCCeEEE
Q 047728 120 GDLLYTGSDSKNIRVWKNQ--RE---FSGFKSNSGLVKAIVIS----------------------NEKIFSGHQDGKIRV 172 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~--~~---~~~~~~h~~~V~~i~~~----------------------~~~l~s~~~dg~i~v 172 (474)
..++|....||.+|+|++. +. +.....-++..++..|. -..++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 6789999999999999843 22 22222334455555552 125788889999999
Q ss_pred EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc
Q 047728 173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY 252 (474)
Q Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 252 (474)
|++..++........ .|.+.|.++.++.+-.+|++++.|+.+..|+...+
T Consensus 85 ys~~~g~it~~~st~------------------------------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~ 134 (541)
T KOG4547|consen 85 YSVAGGEITAKLSTD------------------------------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK 134 (541)
T ss_pred EEecCCeEEEEEecC------------------------------CCCCcceeeecccccCceEecCCceeEEEEecccc
Confidence 999888765443322 39999999999999999999999999999999999
Q ss_pred ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC-----CCEEEE
Q 047728 253 KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD-----AAIVYC 326 (474)
Q Consensus 253 ~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----~~~l~~ 326 (474)
+.+.........+..++++||+ .+++++ +.|++||++..+ ....+.+|.++|++++|-.+ |.++++
T Consensus 135 ~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke------vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLs 206 (541)
T KOG4547|consen 135 VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE------VVITFTGHGSPVRTLSFTTLIDGIIGKYVLS 206 (541)
T ss_pred eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCce------EEEEecCCCcceEEEEEEEeccccccceeee
Confidence 9999999989999999999998 676664 789999998765 47889999999999999876 666665
Q ss_pred E-cCCCcEEEeecCc
Q 047728 327 G-SSDGLVNFWEREL 340 (474)
Q Consensus 327 ~-~~dg~i~v~d~~~ 340 (474)
+ ..+..+.+|-++.
T Consensus 207 sa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 207 SAAAERGITVWVVEK 221 (541)
T ss_pred ccccccceeEEEEEc
Confidence 4 3445577776554
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.24 E-value=2.9e-09 Score=103.82 Aligned_cols=209 Identities=10% Similarity=0.009 Sum_probs=131.5
Q ss_pred cEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCC---CeEEEEecCCCCcceeeeecccCccceeeeeecCCCC
Q 047728 131 NIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQD---GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSN 204 (474)
Q Consensus 131 ~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (474)
.|.++|.. .....+..+...+....|+ +++|+.+..+ ..|++|++.+++....
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~--------------------- 229 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV--------------------- 229 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe---------------------
Confidence 47777753 3445555666678888887 6677766544 4799999987643211
Q ss_pred eEEEeeeccceeeeccCCeeEEEecCCCCEEEE-EECCC--cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee
Q 047728 205 YIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS-ASWDK--TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS 280 (474)
Q Consensus 205 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~ 280 (474)
..+...+.+++|+|+++.|+. .+.++ .|++||+.+++.. .+..+........|++++ .|+..+
T Consensus 230 ------------~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s 296 (417)
T TIGR02800 230 ------------ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTS 296 (417)
T ss_pred ------------ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEE
Confidence 113345667899999987764 44444 5889998876543 344444555677899998 555444
Q ss_pred -CCC--cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC---cEEEeecCcccccceeeeeccee
Q 047728 281 -ADG--TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG---LVNFWERELNLSHGGVLRGHKLA 354 (474)
Q Consensus 281 -~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~~ 354 (474)
.++ .|.++|+.... ...+..+...+....|+|++++|+.++.++ .|.+||+.++... .+.......
T Consensus 297 ~~~g~~~iy~~d~~~~~-------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~ 368 (417)
T TIGR02800 297 DRGGSPQIYMMDADGGE-------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDE 368 (417)
T ss_pred CCCCCceEEEEECCCCC-------EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCC
Confidence 344 46666655322 122233445667889999999999888776 7888998765322 111111222
Q ss_pred eEEEEecCCEEEEEeCCC---cEEEEECCC
Q 047728 355 ILCLVTAGNLVFSGSADM---SICIWRRKE 381 (474)
Q Consensus 355 v~~~~~~~~~l~sgs~dg---~i~iwd~~~ 381 (474)
...+++++++|+..+.++ .+.+.+...
T Consensus 369 ~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 369 SPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred CceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 347888999888777654 355555443
No 259
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=7.5e-09 Score=101.16 Aligned_cols=229 Identities=11% Similarity=-0.009 Sum_probs=138.1
Q ss_pred EEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCC---CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCe
Q 047728 132 IRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQD---GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNY 205 (474)
Q Consensus 132 v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (474)
|.++|.. .....+..+...+....|+ ++.|+..+.+ ..|.+|++.+++.....
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~--------------------- 239 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT--------------------- 239 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---------------------
Confidence 6666743 3344555677788888887 6677665543 36888899876542111
Q ss_pred EEEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCC--cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEE-Eee
Q 047728 206 IEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDK--TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF-TGS 280 (474)
Q Consensus 206 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-~~~ 280 (474)
.....+...+|+|+|+.|+ +...++ .|.+||+.+++.. .+..+........|+||+ .++ +..
T Consensus 240 ------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~ 306 (430)
T PRK00178 240 ------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSD 306 (430)
T ss_pred ------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEEC
Confidence 0222344689999998887 444454 5888899887643 344455556678899998 444 444
Q ss_pred CCCc--EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-C--cEEEeecCcccccceeeeecceee
Q 047728 281 ADGT--VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-G--LVNFWERELNLSHGGVLRGHKLAI 355 (474)
Q Consensus 281 ~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~~v 355 (474)
.+|. |.++|+..+.. . .+...........|+|+++.|+....+ + .|.+||+.++... .+.......-
T Consensus 307 ~~g~~~iy~~d~~~g~~--~-----~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~~~~~ 378 (430)
T PRK00178 307 RGGKPQIYKVNVNGGRA--E-----RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTSLDES 378 (430)
T ss_pred CCCCceEEEEECCCCCE--E-----EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCCCCCCC
Confidence 4454 55556543321 1 111112233457899999998877653 3 4788898776432 1212222223
Q ss_pred EEEEecCCEEEEEeCC---CcEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728 356 LCLVTAGNLVFSGSAD---MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405 (474)
Q Consensus 356 ~~~~~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~ 405 (474)
..++++|+.++..+.+ ..|.++++..... ..+..+.+.+...+|+|-
T Consensus 379 p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~---~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 379 PSVAPNGTMLIYATRQQGRGVLMLVSINGRVR---LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ceECCCCCEEEEEEecCCceEEEEEECCCCce---EECcCCCCCcCCCccCCC
Confidence 5788999988776643 3466777765432 234445556677777763
No 260
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=1.6e-10 Score=110.31 Aligned_cols=285 Identities=16% Similarity=0.252 Sum_probs=186.4
Q ss_pred EEEEEEcCCEEEEeeCCCcEEEEeCCccccc--cccCcc--CEEEEEec----CCEEEEEeCCCeEEEEecCCCCcceee
Q 047728 113 IYSLAAAGDLLYTGSDSKNIRVWKNQREFSG--FKSNSG--LVKAIVIS----NEKIFSGHQDGKIRVWKVSSKDASIHK 184 (474)
Q Consensus 113 i~~~~~~~~~l~tgs~dg~v~vwd~~~~~~~--~~~h~~--~V~~i~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~ 184 (474)
..++.+.|+-+|.++.-| +.+-|+...... +..|.. .|-.+.|+ .++-++......-.+|++........
T Consensus 29 a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI- 106 (1081)
T KOG0309|consen 29 AVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI- 106 (1081)
T ss_pred ceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccce-
Confidence 355677799999998877 455564433222 122322 35555565 23444444444567898875432111
Q ss_pred eecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCCcEEEEEcCCcc-eeeeeeecC
Q 047728 185 RVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDKTFKVWRTSDYK-CLESVIAHD 262 (474)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~ 262 (474)
+ -.+-+|..+|+.+.|+|. ...+++++-|-.+..||+++.. .+.....-.
T Consensus 107 ----------------------e------f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~ 158 (1081)
T KOG0309|consen 107 ----------------------E------FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR 158 (1081)
T ss_pred ----------------------E------EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc
Confidence 1 134569999999999994 4688999999999999998754 455555555
Q ss_pred cceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCc
Q 047728 263 DAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWEREL 340 (474)
Q Consensus 263 ~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~ 340 (474)
.....++|+-.. .+++.+....|++||++.+.. +...+++|...|..++|.. ....+.+.+.|++|+.||.+.
T Consensus 159 s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~-----pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 159 SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST-----PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred ccCceeeecccCcchhhhccCCceEEEeccCCCc-----ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 666788888766 677777888899999997765 5667777888899999887 456788899999999999765
Q ss_pred ccccceeeeecceee-----------EEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728 341 NLSHGGVLRGHKLAI-----------LCLVTA--GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 341 ~~~~~~~~~~~~~~v-----------~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
.............++ .++.|. ++.+..---+.....|+..++.. .+..+.||...|....|-..+.
T Consensus 234 St~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~-pVh~F~GH~D~V~eFlWR~r~e 312 (1081)
T KOG0309|consen 234 STTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNT-PVHTFVGHDDVVLEFLWRKRKE 312 (1081)
T ss_pred cccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCc-ceeeecCcchHHHHHhhhhccc
Confidence 433222211111111 222221 22222222233444555544433 4789999999998888876554
Q ss_pred ccc--ccceEEEEEecCCCcEEEEEccC
Q 047728 408 SLS--REKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 408 ~~~--~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
... +...+.|+|=+.|..+++|.+..
T Consensus 313 ~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 313 CDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccCCCCccceeEEEeecCCceEeeeccH
Confidence 221 33456899999999999998865
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.19 E-value=1.9e-07 Score=86.17 Aligned_cols=268 Identities=10% Similarity=0.042 Sum_probs=157.4
Q ss_pred CcEEEEeCC--ccccccccCccCEEEEEecCCEEEEEeC----------CCeEEEEecCCCCcceeeeecccCccceeee
Q 047728 130 KNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFSGHQ----------DGKIRVWKVSSKDASIHKRVGTLPTFKDFIK 197 (474)
Q Consensus 130 g~v~vwd~~--~~~~~~~~h~~~V~~i~~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 197 (474)
++|.+.|.. +.+..+.....+-..+.-+++.|+++.. +..|.+||..+.+......+...|...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~---- 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL---- 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh----
Confidence 778888844 3333333222222224445666665554 789999999998876555443221100
Q ss_pred eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-C-CCcEEEEEcCCcceeeeeeecCcceeEEEecCCCe
Q 047728 198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-W-DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGL 275 (474)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~ 275 (474)
....-..++++|||++|+... . +..|.+.|+.+++.+..+.... ...-...+++ .
T Consensus 103 ---------------------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~-~ 159 (352)
T TIGR02658 103 ---------------------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAND-T 159 (352)
T ss_pred ---------------------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCC-c
Confidence 112234678899999999876 3 6899999999999998886522 2222222222 2
Q ss_pred EEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEE-EEEEcC-CCCEEEEEcCCCcEEEeecCccccc----ceee-
Q 047728 276 VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVT-ALAISP-DAAIVYCGSSDGLVNFWERELNLSH----GGVL- 348 (474)
Q Consensus 276 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~----~~~~- 348 (474)
..+-+.||......+...++..... ...+.....++. .-.|.+ +++++++..+ |.|.+.|+...... ...+
T Consensus 160 ~~~~~~Dg~~~~v~~d~~g~~~~~~-~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~ 237 (352)
T TIGR02658 160 FFMHCRDGSLAKVGYGTKGNPKIKP-TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFT 237 (352)
T ss_pred cEEEeecCceEEEEecCCCceEEee-eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecc
Confidence 2234456666655544333311100 011111000000 004455 8888887777 99999996433111 1111
Q ss_pred --------eecceeeEEEEecCCEEEEEe----------CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcccc
Q 047728 349 --------RGHKLAILCLVTAGNLVFSGS----------ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLS 410 (474)
Q Consensus 349 --------~~~~~~v~~~~~~~~~l~sgs----------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 410 (474)
+......++++++++.+++.. ..+.|.++|..+.+. +..+.. ...+..++++||++..
T Consensus 238 ~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv--i~~i~v-G~~~~~iavS~Dgkp~- 313 (352)
T TIGR02658 238 EAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR--LRKIEL-GHEIDSINVSQDAKPL- 313 (352)
T ss_pred ccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE--EEEEeC-CCceeeEEECCCCCeE-
Confidence 111122488888998888753 225799999988874 344432 3478999999998831
Q ss_pred ccceEEEEEecCCCcEEEEEccCCC
Q 047728 411 REKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 411 ~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
++++...++.|.+.|+.+++
T Consensus 314 -----lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 314 -----LYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred -----EEEeCCCCCcEEEEECcCCe
Confidence 45555578999999998874
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=1e-08 Score=99.93 Aligned_cols=229 Identities=13% Similarity=0.019 Sum_probs=133.5
Q ss_pred cEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeC-CC--eEEEEecCCCCcceeeeecccCccceeeeeecCCCC
Q 047728 131 NIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQ-DG--KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSN 204 (474)
Q Consensus 131 ~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (474)
.|.++|.. .....+..+...+....|+ ++.|+..+. ++ .|.+||+.+++..... .
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt---~---------------- 259 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT---S---------------- 259 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec---C----------------
Confidence 45566643 2334455567778888887 566765543 33 5888888776532110 0
Q ss_pred eEEEeeeccceeeeccCCeeEEEecCCCCEEEE-EECCCc--EEEEEcCCcceeeeeeecCcceeEEEecCCC-eE-EEe
Q 047728 205 YIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS-ASWDKT--FKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTG 279 (474)
Q Consensus 205 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~ 279 (474)
........+|+||++.|+. .+.++. |.++|+.+++. ..+..+........|+||+ .+ ++.
T Consensus 260 --------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s 324 (448)
T PRK04792 260 --------------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTS 324 (448)
T ss_pred --------------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEE
Confidence 1112346789999998765 455665 77888887664 3444455566778999999 44 444
Q ss_pred eCCCcEEEE--EcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-C--cEEEeecCcccccceeeeeccee
Q 047728 280 SADGTVKVW--RRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-G--LVNFWERELNLSHGGVLRGHKLA 354 (474)
Q Consensus 280 ~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~~ 354 (474)
..++...+| |+..+.. ..+..........+|+|++++|+..+.+ + .|.++|+.++... .+.......
T Consensus 325 ~~~g~~~Iy~~dl~~g~~-------~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~~d~ 396 (448)
T PRK04792 325 ERGGKPQIYRVNLASGKV-------SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTRLDE 396 (448)
T ss_pred CCCCCceEEEEECCCCCE-------EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCCCCC
Confidence 445555555 5443221 1111122223456899999988876553 4 3555777665432 111111122
Q ss_pred eEEEEecCCEEEEEeC-CC--cEEEEECCCCceEEEEeecCCccceEEEEEee
Q 047728 355 ILCLVTAGNLVFSGSA-DM--SICIWRRKENEHICLSMLTGHSGPVKCLAVEK 404 (474)
Q Consensus 355 v~~~~~~~~~l~sgs~-dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~ 404 (474)
...++++|+.|+..+. ++ .+.+++..... ...+..+.+.+...+|+|
T Consensus 397 ~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~---~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 397 SPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF---KARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCCCc---eEECcCCCCCcCCCccCC
Confidence 3478899988776554 33 36677775443 334555556677778876
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=1.7e-08 Score=97.67 Aligned_cols=201 Identities=12% Similarity=0.035 Sum_probs=116.4
Q ss_pred cCCeeEEEecCCCCE--E-EEEECC--CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee-CCC----cEEEE
Q 047728 220 FDAISSLSMSEDQNL--L-YSASWD--KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS-ADG----TVKVW 288 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~--l-~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~-~dg----~i~iw 288 (474)
...+..-+|+|||+. + ++...+ ..|.+.++.+++... +....+......|+||| .|+..+ .+| .+.+|
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~ 262 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF 262 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence 334566799999875 2 244333 357888888776433 33344455678999999 555433 333 34446
Q ss_pred EcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEe--ecCcccccceeeeec--ceeeEEEEecCC
Q 047728 289 RRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFW--ERELNLSHGGVLRGH--KLAILCLVTAGN 363 (474)
Q Consensus 289 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~--d~~~~~~~~~~~~~~--~~~v~~~~~~~~ 363 (474)
++....... ...............+|+|||+.|+..+ .+|...+| ++.........+..+ ......++|+|+
T Consensus 263 ~~~~g~~g~---~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~ 339 (428)
T PRK01029 263 SLETGAIGK---PRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK 339 (428)
T ss_pred ecccCCCCc---ceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCC
Confidence 665321111 1111112223346789999999877655 46655555 443211111222222 223467899999
Q ss_pred EEEEEeCC---CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC--CCcEEEEEccCC
Q 047728 364 LVFSGSAD---MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL--DKSVKMWRVSEQ 434 (474)
Q Consensus 364 ~l~sgs~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~--Dg~i~vw~~~~~ 434 (474)
.|+..+.+ ..|.+||+.+++.. .+......+....|+||++. +++++.. ...|.+|++..+
T Consensus 340 ~Laf~~~~~g~~~I~v~dl~~g~~~---~Lt~~~~~~~~p~wSpDG~~-------L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 340 KIAFCSVIKGVRQICVYDLATGRDY---QLTTSPENKESPSWAIDSLH-------LVYSAGNSNESELYLISLITK 405 (428)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCeE---EccCCCCCccceEECCCCCE-------EEEEECCCCCceEEEEECCCC
Confidence 88876543 46999999888743 33333345678999999983 3334443 346778888765
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=7.4e-08 Score=89.94 Aligned_cols=299 Identities=12% Similarity=0.143 Sum_probs=172.1
Q ss_pred cEEEEEEcCCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEE-----EeCC-----CeEEEEecCCCC
Q 047728 112 HIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFS-----GHQD-----GKIRVWKVSSKD 179 (474)
Q Consensus 112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s-----~~~d-----g~i~vwd~~~~~ 179 (474)
.+.+.+.+|+++|.+. +..|+|++.......+......+.++.|+ +.+|.| ...+ -.+.+|+++++.
T Consensus 38 ~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~ 116 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGV 116 (566)
T ss_pred eeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccce
Confidence 3555666688877765 55799998554323333333377888887 556554 1122 347799999843
Q ss_pred cceeeeeccc----Cccce--eeeeecCCCCeEEEee---eccceeeeccCCeeEEEecCCC--CEEEE-----EECCCc
Q 047728 180 ASIHKRVGTL----PTFKD--FIKCSMKPSNYIEVRR---HRNGLWIKHFDAISSLSMSEDQ--NLLYS-----ASWDKT 243 (474)
Q Consensus 180 ~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~h~~~V~~l~~~~~~--~~l~s-----~s~dg~ 243 (474)
.....+.... +.+.. .+.+- ...+.+.+.. ...-.-.-|...|+.+.++|.+ ..+++ .+.-..
T Consensus 117 ~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~ 195 (566)
T KOG2315|consen 117 QRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPAS 195 (566)
T ss_pred ehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcE
Confidence 3322211110 00000 00000 0000111111 0111112267789999999863 33443 245567
Q ss_pred EEEEEcCCcceeeeee---ecCcceeEEEecCCC--eEEEeeC--C---------CcEEEEEcccCCCceeeeeeeeeec
Q 047728 244 FKVWRTSDYKCLESVI---AHDDAVNSIVAGFDG--LVFTGSA--D---------GTVKVWRRELQGKGTKHFFSQTLLK 307 (474)
Q Consensus 244 i~iwd~~~~~~~~~~~---~~~~~v~~v~~~~~~--~l~~~~~--d---------g~i~iwd~~~~~~~~~~~~~~~~~~ 307 (474)
|+||.......-..+. -....-..+.|++.+ +|+.++. | .++++.++. +. .......
T Consensus 196 vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~--g~-----s~~V~L~ 268 (566)
T KOG2315|consen 196 VRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ--GE-----SVSVPLL 268 (566)
T ss_pred EEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec--Cc-----eEEEecC
Confidence 9999876222111110 011222356777766 4433332 3 357777665 11 1233344
Q ss_pred ccccEEEEEEcCCCCEEEE--EcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC---CcEEEEECCCC
Q 047728 308 QECAVTALAISPDAAIVYC--GSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD---MSICIWRRKEN 382 (474)
Q Consensus 308 ~~~~v~~l~~~~~~~~l~~--~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d---g~i~iwd~~~~ 382 (474)
..++|.++.|+|+++.+++ |..-..+.|||++.... ..+.......+-++|.|++++.++-+ |.|-|||+.+.
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v--~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV--FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe--EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence 5789999999999987665 55677899999885522 23333444557788899999887754 89999999986
Q ss_pred ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC------CCcEEEEEccC
Q 047728 383 EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL------DKSVKMWRVSE 433 (474)
Q Consensus 383 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~------Dg~i~vw~~~~ 433 (474)
+ ++..+.. ..-+-+.|+|||+ +|+|+.. |+.++||++..
T Consensus 347 K--~i~~~~a--~~tt~~eW~PdGe--------~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 347 K--LIAKFKA--ANTTVFEWSPDGE--------YFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred h--hcccccc--CCceEEEEcCCCc--------EEEEEeccccEEecCCeEEEEecC
Confidence 5 4555554 3356789999999 7777763 78899999864
No 265
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=1.8e-10 Score=106.66 Aligned_cols=252 Identities=14% Similarity=0.180 Sum_probs=161.2
Q ss_pred ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728 141 FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218 (474)
Q Consensus 141 ~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
++.+.+|...|.+++-- .+.+++++.|.+|++|.+........... ..-++..
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsa-------------------------CQfTY~a 782 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSA-------------------------CQFTYQA 782 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccce-------------------------eeeEhhh
Confidence 56788999999988654 67899999999999999876432111000 0124567
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee--cCcceeEEEecCC--C-e-EEEeeCCCcEEEEEccc
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA--HDDAVNSIVAGFD--G-L-VFTGSADGTVKVWRREL 292 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~--~-~-l~~~~~dg~i~iwd~~~ 292 (474)
|..+|.++.|-.+.++++++ |+-|++||.--++.+..+.. ..+.+.-+...++ . . ++-++...+|+++|.+.
T Consensus 783 Hkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 783 HKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS 860 (1034)
T ss_pred ccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc
Confidence 99999999999988887765 88999999877776654321 1233333333333 2 3 44448899999999886
Q ss_pred CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee---------------------eec
Q 047728 293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL---------------------RGH 351 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---------------------~~~ 351 (474)
.+-.... ......+...-++++++.+.|+.++++-..|+|.+.|.+++..+.... ..|
T Consensus 861 ce~~~E~-kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldH 939 (1034)
T KOG4190|consen 861 CEWTCEL-KVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDH 939 (1034)
T ss_pred ccceeeE-EeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccc
Confidence 5432111 112223445678999999999999999999999999999886543111 122
Q ss_pred ceeeEE--------EE------------ecCCEEEEEeCCCcEEEEECCCCceE--EE--EeecCCccceEEEEEeeCCc
Q 047728 352 KLAILC--------LV------------TAGNLVFSGSADMSICIWRRKENEHI--CL--SMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 352 ~~~v~~--------~~------------~~~~~l~sgs~dg~i~iwd~~~~~~~--~~--~~~~~h~~~v~~l~~~~~~~ 407 (474)
...|.- +. .-|.-+++......+.+|.-...-.. .+ .......+..++++.-|-+.
T Consensus 940 slaVnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~ 1019 (1034)
T KOG4190|consen 940 SLAVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNC 1019 (1034)
T ss_pred eeEeeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccc
Confidence 222210 00 01345666666667777743211000 01 11223456678888888776
Q ss_pred cccccceEEEEEecCCCcEEE
Q 047728 408 SLSREKRWILYSGSLDKSVKM 428 (474)
Q Consensus 408 ~~~~~~~~~l~s~s~Dg~i~v 428 (474)
-+..|...|.|.+
T Consensus 1020 --------afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1020 --------AFLAGNEHGAIAL 1032 (1034)
T ss_pred --------hhhccCCCCceee
Confidence 5777888888775
No 266
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.13 E-value=7.4e-10 Score=93.23 Aligned_cols=230 Identities=20% Similarity=0.282 Sum_probs=138.8
Q ss_pred EEEEEEc-CCEEEEeeCCCcEEEEeCC--------------ccccccccCc--cCEEEEEecCCEEEEEeCCCeEEEEec
Q 047728 113 IYSLAAA-GDLLYTGSDSKNIRVWKNQ--------------REFSGFKSNS--GLVKAIVISNEKIFSGHQDGKIRVWKV 175 (474)
Q Consensus 113 i~~~~~~-~~~l~tgs~dg~v~vwd~~--------------~~~~~~~~h~--~~V~~i~~~~~~l~s~~~dg~i~vwd~ 175 (474)
|..+.+. ...|+++..++.+...... .++..+..|. ++-..+...++.++++..||.+.+.+.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 5555655 4466777666665554321 1223333333 334444444778999999999999998
Q ss_pred CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-----CCCcEEEEEcC
Q 047728 176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-----WDKTFKVWRTS 250 (474)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-----~dg~i~iwd~~ 250 (474)
+..... ..++... |.+.. +.++...++.+.++. .-+..++|+++
T Consensus 119 ~~~~~~-~~~i~~~-----------------------------~~~~a-s~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~ 167 (319)
T KOG4714|consen 119 DKDLAL-MSRIPSI-----------------------------HSGSA-SRKICRHGNSILSGGCGNWNAQDNFYANTLD 167 (319)
T ss_pred hHHHhh-hhhcccc-----------------------------ccccc-ccceeecccEEecCCcceEeeccceeeeccc
Confidence 762211 1111100 11111 111222333333322 22346667665
Q ss_pred CcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEE
Q 047728 251 DYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCG 327 (474)
Q Consensus 251 ~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~ 327 (474)
..+.+..-+.....|.+++-+|.. .+++|+.||.+-+||.+.... +...+..|+.+++.+-|+| ++..|+++
T Consensus 168 p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-----p~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 168 PIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-----PVSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred ccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc-----hHHHHHHhhhhhhheeccCCCchheeEe
Confidence 433322222233458999988876 889999999999999986643 5667788999999999999 77899999
Q ss_pred cCCCcEEEeecCccccc-----------------------ceeeeecceeeEEEEecCCEEEEEeCCCcEEEEE
Q 047728 328 SSDGLVNFWERELNLSH-----------------------GGVLRGHKLAILCLVTAGNLVFSGSADMSICIWR 378 (474)
Q Consensus 328 ~~dg~i~v~d~~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd 378 (474)
++||.+.-||..+...- ..++......|..|..-|..|++|+.-+.|++++
T Consensus 243 sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 243 SEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 99999999997642110 0011111222344444588888888888888775
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=6.2e-08 Score=93.77 Aligned_cols=236 Identities=10% Similarity=-0.007 Sum_probs=133.3
Q ss_pred cEEEEeCC-ccccccccCccCEEEEEecCC--E---EEEEeCCC--eEEEEecCCCCcceeeeecccCccceeeeeecCC
Q 047728 131 NIRVWKNQ-REFSGFKSNSGLVKAIVISNE--K---IFSGHQDG--KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKP 202 (474)
Q Consensus 131 ~v~vwd~~-~~~~~~~~h~~~V~~i~~~~~--~---l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (474)
.|.+.|.. .....+......+..-.|+++ . +++...+| .|.+.++.+++......
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~----------------- 228 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA----------------- 228 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-----------------
Confidence 45555532 233334445555666678733 3 23454444 46666777664322111
Q ss_pred CCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-----CCcEEEEEcCCc---ceeeeeeecCcceeEEEecCCC
Q 047728 203 SNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-----DKTFKVWRTSDY---KCLESVIAHDDAVNSIVAGFDG 274 (474)
Q Consensus 203 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----dg~i~iwd~~~~---~~~~~~~~~~~~v~~v~~~~~~ 274 (474)
........+|+|||+.|+..+. +-.+.+|++..+ +................|+|||
T Consensus 229 ----------------~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG 292 (428)
T PRK01029 229 ----------------LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG 292 (428)
T ss_pred ----------------CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC
Confidence 2233446799999998886653 223444776653 2222222222344678999999
Q ss_pred -eEEEe-eCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC---CcEEEeecCcccccceeee
Q 047728 275 -LVFTG-SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD---GLVNFWERELNLSHGGVLR 349 (474)
Q Consensus 275 -~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~ 349 (474)
.|+.. ..+|...+|.+....... ....+......+....|+|||+.|+....+ ..|.+||+.++....-...
T Consensus 293 ~~Laf~s~~~g~~~ly~~~~~~~g~---~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~ 369 (428)
T PRK01029 293 TRLVFVSNKDGRPRIYIMQIDPEGQ---SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS 369 (428)
T ss_pred CEEEEEECCCCCceEEEEECccccc---ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC
Confidence 45544 457766677554321111 112222334466788999999988876543 3689999987754321111
Q ss_pred ecceeeEEEEecCCEEEEEeC---CCcEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728 350 GHKLAILCLVTAGNLVFSGSA---DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405 (474)
Q Consensus 350 ~~~~~v~~~~~~~~~l~sgs~---dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~ 405 (474)
........++++|+.|+.... ...|.++|+.+++... +....+.+...+|+|-
T Consensus 370 ~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~---Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 370 PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK---IVIGSGEKRFPSWGAF 425 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE---eecCCCcccCceecCC
Confidence 122344678889988775433 3568888988776432 2234455667778764
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.11 E-value=9.7e-10 Score=114.63 Aligned_cols=191 Identities=14% Similarity=0.258 Sum_probs=143.6
Q ss_pred eeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee-cCcceeEEEecCCC-eEEEeeCCCcEEEEEccc
Q 047728 215 LWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDG-LVFTGSADGTVKVWRREL 292 (474)
Q Consensus 215 ~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~ 292 (474)
..+.+-..|.++.=+|...+.++|+.||.|++|....++.+..+.. ....|+.+.|+.+| .+..+..||.+.+|....
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC
Confidence 3455667889999899889999999999999999988888777753 33788899999888 899999999999998762
Q ss_pred CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc---CCCcEEEeecCcccccceeeeecc--eeeEEEEecCCEEEE
Q 047728 293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS---SDGLVNFWERELNLSHGGVLRGHK--LAILCLVTAGNLVFS 367 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~s 367 (474)
. +......|......+.|-. ..+++++ .++.+.+||.-......-+...|. ..++...|..++|++
T Consensus 2283 k-------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2283 K-------PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLIS 2353 (2439)
T ss_pred c-------ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEe
Confidence 1 3445566777777777765 5555543 467899999654322222224454 555666788999999
Q ss_pred EeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 368 GSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 368 gs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
|+.+|.|++||++..+. ...++. +. ... ++++|+..|.|+||++...
T Consensus 2354 ggr~G~v~l~D~rqrql--~h~~~~---------~~-~~~--------~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQL--RHTFQA---------LD-TRE--------YFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred cCCcCcEEEeehHHHHH--HHHhhh---------hh-hhh--------eeeccCcccceEEEEcccc
Confidence 99999999999987652 233332 33 333 8999999999999999876
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=1.1e-06 Score=78.34 Aligned_cols=265 Identities=11% Similarity=0.187 Sum_probs=170.7
Q ss_pred CCcEEEEeCCcc-----ccccccCccCEEEEEec--CCEEEEEeCC---CeEEEEecCCC--CcceeeeecccCccceee
Q 047728 129 SKNIRVWKNQRE-----FSGFKSNSGLVKAIVIS--NEKIFSGHQD---GKIRVWKVSSK--DASIHKRVGTLPTFKDFI 196 (474)
Q Consensus 129 dg~v~vwd~~~~-----~~~~~~h~~~V~~i~~~--~~~l~s~~~d---g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~ 196 (474)
+.-|++|++... ....-.+.+..+-|+++ ++.|+++..+ |.|-.|.++.. .....-+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~---------- 84 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ---------- 84 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc----------
Confidence 456999975421 22334567788889998 4468877654 77888888763 22211110
Q ss_pred eeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-CCcEEEEEcCC-cceee--eeeecCcc--------
Q 047728 197 KCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-DKTFKVWRTSD-YKCLE--SVIAHDDA-------- 264 (474)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~iwd~~~-~~~~~--~~~~~~~~-------- 264 (474)
.. ...+-..+++++++++|+++.. .|.|.++-++. |.... .+..|.+.
T Consensus 85 ------------------~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~ 144 (346)
T COG2706 85 ------------------TL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQES 144 (346)
T ss_pred ------------------cc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccC
Confidence 00 1223378899999999998874 48899998865 43322 22345544
Q ss_pred --eeEEEecCCC-eEEEee-CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CCcEEEeecC
Q 047728 265 --VNSIVAGFDG-LVFTGS-ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DGLVNFWERE 339 (474)
Q Consensus 265 --v~~v~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~ 339 (474)
+....+.|++ +|++.. .--.|.+|++..+.. .. ............+.|.|+|++++.++.++ +++|.+|..+
T Consensus 145 ~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L-~~--~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 145 PHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKL-TP--ADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred CccceeeeCCCCCEEEEeecCCceEEEEEcccCcc-cc--ccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence 7888899999 444433 234689999884332 11 11222255677899999999999887765 7899999877
Q ss_pred cccccceee-----------eecceeeEEEEecCCEEEEEeC-CCcEEEEECCC--CceEEEEeecCCccceEEEEEeeC
Q 047728 340 LNLSHGGVL-----------RGHKLAILCLVTAGNLVFSGSA-DMSICIWRRKE--NEHICLSMLTGHSGPVKCLAVEKD 405 (474)
Q Consensus 340 ~~~~~~~~~-----------~~~~~~v~~~~~~~~~l~sgs~-dg~i~iwd~~~--~~~~~~~~~~~h~~~v~~l~~~~~ 405 (474)
........+ .......+.++++|++|+++.. ...|.+|.+.. ++...+.....+...-+.+.|++.
T Consensus 222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~ 301 (346)
T COG2706 222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS 301 (346)
T ss_pred CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC
Confidence 641111111 1223455778899999998874 34788887753 343334444445555789999999
Q ss_pred CccccccceEEEEEecC-CCcEEEEEccCC
Q 047728 406 DESLSREKRWILYSGSL-DKSVKMWRVSEQ 434 (474)
Q Consensus 406 ~~~~~~~~~~~l~s~s~-Dg~i~vw~~~~~ 434 (474)
++ +|+.+.. +..|.+|.+...
T Consensus 302 g~--------~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 302 GR--------FLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CC--------EEEEEccCCCcEEEEEEcCC
Confidence 98 6666654 457999998764
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=2e-09 Score=102.69 Aligned_cols=216 Identities=13% Similarity=0.100 Sum_probs=159.0
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc---------------eeeeeeecCcceeEEEecCCC-eEEEeeCC
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK---------------CLESVIAHDDAVNSIVAGFDG-LVFTGSAD 282 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~v~~~~~~-~l~~~~~d 282 (474)
......|+.|+....++++|+.||.+++..+.+.. .-+++.+|...|.-+.|+.+. .|-+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 44567899999999999999999999999775421 224677899999999999887 88999999
Q ss_pred CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecC
Q 047728 283 GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAG 362 (474)
Q Consensus 283 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~ 362 (474)
|.|.+|-+-.+.- .....-....+.|.+++|+.+|..++....||.|.+=.++.+......+.+....-+.+++|.
T Consensus 93 GlIiVWmlykgsW----~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSW----CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDL 168 (1189)
T ss_pred ceEEEEeeecccH----HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccH
Confidence 9999997653321 111222345667999999999999999999999999888777666666666666667788898
Q ss_pred CEEEEEeCCCcEEEEECCCCc-----eEEEE----eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 363 NLVFSGSADMSICIWRRKENE-----HICLS----MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 363 ~~l~sgs~dg~i~iwd~~~~~-----~~~~~----~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
+.++.+-..|.+.+||.+..- ..+.. .+......|..+.|.........+.+..|+.+-..|.++|-+-.+
T Consensus 169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence 888888899999999986531 11111 112222346677776543333344556999999999999987665
Q ss_pred CCCCC
Q 047728 434 QAPPL 438 (474)
Q Consensus 434 ~~~~~ 438 (474)
...|.
T Consensus 249 D~~Pv 253 (1189)
T KOG2041|consen 249 DPEPV 253 (1189)
T ss_pred CCCCe
Confidence 54443
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.08 E-value=2.2e-07 Score=85.08 Aligned_cols=168 Identities=15% Similarity=0.099 Sum_probs=123.2
Q ss_pred CCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEEEeCCC-eEEEEecCCCCcceeeeecccCccceee
Q 047728 120 GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDG-KIRVWKVSSKDASIHKRVGTLPTFKDFI 196 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 196 (474)
|++++..|. |.+.|.+.......--+|.+.|.-..+. ++.++.|..|| .+-|+|.++++...
T Consensus 332 Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-------------- 396 (668)
T COG4946 332 GDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-------------- 396 (668)
T ss_pred CcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE--------------
Confidence 888888874 5677766444444445677778877776 66899999999 89999999886432
Q ss_pred eeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-e
Q 047728 197 KCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-L 275 (474)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~ 275 (474)
+.+.-+.|.++..+++|+.++.+.....|.+.|+.++.....-+...+-|+.+.|+|++ .
T Consensus 397 -------------------~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~ 457 (668)
T COG4946 397 -------------------IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRW 457 (668)
T ss_pred -------------------eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCcee
Confidence 22356678999999999999999999999999999998766656667889999999999 7
Q ss_pred EEEeeCCC----cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728 276 VFTGSADG----TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS 328 (474)
Q Consensus 276 l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 328 (474)
++-+--+| .|+++|+..++. -........=.+-+|.|++++|+--+
T Consensus 458 iAYafP~gy~tq~Iklydm~~~Ki-------y~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 458 IAYAFPEGYYTQSIKLYDMDGGKI-------YDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEEecCcceeeeeEEEEecCCCeE-------EEecCCcccccCcccCCCCcEEEEEe
Confidence 77766665 589999875432 11111222234457888888776543
No 272
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=7.4e-07 Score=79.34 Aligned_cols=236 Identities=14% Similarity=0.188 Sum_probs=150.7
Q ss_pred ccCCeeEEEecCCCCEEEEEECC---CcEEEEEcCC--ccee--eeeeecCcceeEEEecCCC-eEEEeeC-CCcEEEEE
Q 047728 219 HFDAISSLSMSEDQNLLYSASWD---KTFKVWRTSD--YKCL--ESVIAHDDAVNSIVAGFDG-LVFTGSA-DGTVKVWR 289 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~d---g~i~iwd~~~--~~~~--~~~~~~~~~v~~v~~~~~~-~l~~~~~-dg~i~iwd 289 (474)
+....+-|+|+|++++|+++-.+ |.|-.|.+.. |+.. ........+.+.+++++++ .++++.. .|.|.++-
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence 66778899999999999988654 7787777764 4432 2222233445889999999 6665554 58899998
Q ss_pred cccCCCceeeeeeeeeeccccc----------EEEEEEcCCCCEEEEEcC-CCcEEEeecCcccccc----eeeeeccee
Q 047728 290 RELQGKGTKHFFSQTLLKQECA----------VTALAISPDAAIVYCGSS-DGLVNFWERELNLSHG----GVLRGHKLA 354 (474)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~----------v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~----~~~~~~~~~ 354 (474)
++..+.... ......|.+. +....+.|++++|++.+- .-.|.+|++..+.... ....+....
T Consensus 118 ~~~dG~l~~---~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR 194 (346)
T COG2706 118 LQADGSLQP---VVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR 194 (346)
T ss_pred cccCCcccc---ceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence 875433211 1112222222 888999999999988754 3469999988553221 223344455
Q ss_pred eEEEEecCCEEEEEe-CCCcEEEEECCC--CceEEEEeecC------CccceEEEEEeeCCccccccceEEEEEec-CCC
Q 047728 355 ILCLVTAGNLVFSGS-ADMSICIWRRKE--NEHICLSMLTG------HSGPVKCLAVEKDDESLSREKRWILYSGS-LDK 424 (474)
Q Consensus 355 v~~~~~~~~~l~sgs-~dg~i~iwd~~~--~~~~~~~~~~~------h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg 424 (474)
-+.|+|++++.+... -+++|.+|.... ++...+..+.. -.....+|.+++|++ +|+++. ...
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr--------FLYasNRg~d 266 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR--------FLYASNRGHD 266 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC--------EEEEecCCCC
Confidence 689999999988776 489999999976 33333332211 234577889999999 777663 234
Q ss_pred cEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728 425 SVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 425 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
.|-+|.+......+ ........+....... .|+++|++|+-
T Consensus 267 sI~~f~V~~~~g~L---~~~~~~~teg~~PR~F----~i~~~g~~Lia 307 (346)
T COG2706 267 SIAVFSVDPDGGKL---ELVGITPTEGQFPRDF----NINPSGRFLIA 307 (346)
T ss_pred eEEEEEEcCCCCEE---EEEEEeccCCcCCccc----eeCCCCCEEEE
Confidence 78888887653221 1222222333334555 56777887753
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.02 E-value=2.1e-07 Score=85.24 Aligned_cols=210 Identities=10% Similarity=0.082 Sum_probs=139.9
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCcceeeeeeec-------Cc-----c---eeEEEecCCCeEEEeeCCCcEEEEEcccC
Q 047728 229 SEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH-------DD-----A---VNSIVAGFDGLVFTGSADGTVKVWRRELQ 293 (474)
Q Consensus 229 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~-----~---v~~v~~~~~~~l~~~~~dg~i~iwd~~~~ 293 (474)
+.||+.++-. ..|.|.+||..+.+.. .+.-. .. + ....+..+..+++..+ -|...+.+...+
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~ 351 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDG 351 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCC
Confidence 5688877653 4588999998765432 22110 00 0 1112222222555544 455555543322
Q ss_pred CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-cEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCC
Q 047728 294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADM 372 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg 372 (474)
.....++...|.-..+..+++-++.|..|| .+-+||.++++.......-.....+.++++|++++.+....
T Consensus 352 --------~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~ 423 (668)
T COG4946 352 --------YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRF 423 (668)
T ss_pred --------eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCce
Confidence 123345666688888888888889999999 89999999886433222233445577788999999999999
Q ss_pred cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC----cEEEEEccCCCCCCCCCccccccc
Q 047728 373 SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK----SVKMWRVSEQAPPLVSTTQQHPLE 448 (474)
Q Consensus 373 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg----~i~vw~~~~~~~~~~~~~~~~~~~ 448 (474)
.|.+.|+.+++... .-+...+-|+.+.|+|+++ ++|-+--+| .|+++|+..++....
T Consensus 424 el~vididngnv~~--idkS~~~lItdf~~~~nsr--------~iAYafP~gy~tq~Iklydm~~~Kiy~v--------- 484 (668)
T COG4946 424 ELWVIDIDNGNVRL--IDKSEYGLITDFDWHPNSR--------WIAYAFPEGYYTQSIKLYDMDGGKIYDV--------- 484 (668)
T ss_pred EEEEEEecCCCeeE--ecccccceeEEEEEcCCce--------eEEEecCcceeeeeEEEEecCCCeEEEe---------
Confidence 99999999998432 2234567899999999999 788776665 689999988632211
Q ss_pred CCCCCCCccccCCCCCcCCceee
Q 047728 449 GHGVAPNSLPYAPSFSSQGRICQ 471 (474)
Q Consensus 449 ~~~~~v~~l~~~p~~s~Dg~~l~ 471 (474)
...++-.|+|+|.|||+.|-
T Consensus 485 ---TT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 485 ---TTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred ---cCCcccccCcccCCCCcEEE
Confidence 12356679999999999873
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.99 E-value=6.5e-07 Score=95.67 Aligned_cols=207 Identities=10% Similarity=0.092 Sum_probs=132.1
Q ss_pred CCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeec-----------------CcceeEEEecCC-C-eEEEee
Q 047728 221 DAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAH-----------------DDAVNSIVAGFD-G-LVFTGS 280 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-----------------~~~v~~v~~~~~-~-~l~~~~ 280 (474)
.....|++.++++.|+++. .++.|+++|..++. +.++.+- -.....++++++ + .+++..
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 4467899999888776655 45779999987754 3333210 113467899984 5 566777
Q ss_pred CCCcEEEEEcccCCCceeee--eeeee------ecccccEEEEEEcCCCCEEE-EEcCCCcEEEeecCccccccee----
Q 047728 281 ADGTVKVWRRELQGKGTKHF--FSQTL------LKQECAVTALAISPDAAIVY-CGSSDGLVNFWERELNLSHGGV---- 347 (474)
Q Consensus 281 ~dg~i~iwd~~~~~~~~~~~--~~~~~------~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~---- 347 (474)
.++.|++||..........- ..... ...-.....++++|++..|+ +-..++.|++||+.++......
T Consensus 703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~ 782 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP 782 (1057)
T ss_pred CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence 78899999976432100000 00000 01123466799999998554 5556789999998765321000
Q ss_pred --------ee---e-------cceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEe-----------ecCCccceE
Q 047728 348 --------LR---G-------HKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM-----------LTGHSGPVK 398 (474)
Q Consensus 348 --------~~---~-------~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-----------~~~h~~~v~ 398 (474)
+. + ....-++++++|+++++-..++.|++||..++....+.. ..+.-....
T Consensus 783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred ccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence 00 0 011235677889988888899999999998775322111 011223577
Q ss_pred EEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 399 CLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 399 ~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
.++++++++ ++++-+.+++|++|++.++..
T Consensus 863 GIavd~dG~--------lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 863 GLALGENGR--------LFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEeCCCC--------EEEEECCCCEEEEEECCCCcc
Confidence 899999998 888999999999999987643
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.99 E-value=8.9e-08 Score=81.29 Aligned_cols=196 Identities=10% Similarity=-0.063 Sum_probs=131.4
Q ss_pred CCCEEEEEECCCcEEEEEcCCccee-eeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeec
Q 047728 231 DQNLLYSASWDKTFKVWRTSDYKCL-ESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK 307 (474)
Q Consensus 231 ~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 307 (474)
.-.+|+.|+..|.+.+|...+.+.. .....|...|.-+.=..+. .+..++.|.++++.+++....... ...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~------~h~ 156 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA------VHN 156 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce------eec
Confidence 3458999999999999998865433 3333344433322211122 678889999999998875443211 111
Q ss_pred ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc-ce-eeeec--ceeeEEEEecCCEEEEEeCCCcEEEEECCCCc
Q 047728 308 QECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH-GG-VLRGH--KLAILCLVTAGNLVFSGSADMSICIWRRKENE 383 (474)
Q Consensus 308 ~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-~~-~~~~~--~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~ 383 (474)
..-.+.+++++++++++++.+....|..|.+...... .. ..... .+...+++.....+|++..||++.|||++...
T Consensus 157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence 1123788999999999999999999999988654322 12 12222 23445666678899999999999999998654
Q ss_pred eEE---EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCC
Q 047728 384 HIC---LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL 438 (474)
Q Consensus 384 ~~~---~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~ 438 (474)
... ..+-..|.+.+..+.|++-+... +|+-.-.=+.+.+-|+++.....
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lD------LLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGLLD------LLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCcce------EEEEecCcceEEEEEcccCceee
Confidence 221 22334689999999999866522 44444455789999999875443
No 276
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.98 E-value=4.4e-07 Score=87.50 Aligned_cols=265 Identities=11% Similarity=0.037 Sum_probs=153.0
Q ss_pred EEcCCEEEEeeCCCcEEEEeC--CccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccce
Q 047728 117 AAAGDLLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKD 194 (474)
Q Consensus 117 ~~~~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 194 (474)
...++.++.++.+|.+..+|. ++.+-...............++.++.+..+|.|..+|..+++.......... ..
T Consensus 117 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~-- 193 (394)
T PRK11138 117 TVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP-SL-- 193 (394)
T ss_pred EEECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCC-cc--
Confidence 344677778888899998884 3444333332222222233477888888999999999999887654432210 00
Q ss_pred eeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCc-------ceeE
Q 047728 195 FIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD-------AVNS 267 (474)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~ 267 (474)
...+...++ . .+..++.++.++.+..+|..+++.+........ ....
T Consensus 194 --------------------~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~ 247 (394)
T PRK11138 194 --------------------TLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVD 247 (394)
T ss_pred --------------------cccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccc
Confidence 000011111 1 123577778889999999999887665432110 0001
Q ss_pred EEec---CCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc
Q 047728 268 IVAG---FDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH 344 (474)
Q Consensus 268 v~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 344 (474)
+... .++.+++++.+|.+..+|..++...... .. .....+. ..+..+++++.+|.+..+|..+++..
T Consensus 248 ~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~----~~----~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 248 VDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR----EY----GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred cCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee----cC----CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEE
Confidence 1111 1457777888999999998765432111 11 1111111 24667888889999999999887543
Q ss_pred ceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC
Q 047728 345 GGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424 (474)
Q Consensus 345 ~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg 424 (474)
-................+.+|+.++.||.|.+.|..+++.. ....-....+..--...++ .|+.++.||
T Consensus 318 W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~--~~~~~~~~~~~s~P~~~~~---------~l~v~t~~G 386 (394)
T PRK11138 318 WSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFV--AQQKVDSSGFLSEPVVADD---------KLLIQARDG 386 (394)
T ss_pred EcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEE--EEEEcCCCcceeCCEEECC---------EEEEEeCCc
Confidence 32211101111111224778899999999999999998843 3333222223221112233 588889999
Q ss_pred cEEEEEc
Q 047728 425 SVKMWRV 431 (474)
Q Consensus 425 ~i~vw~~ 431 (474)
.|..++.
T Consensus 387 ~l~~~~~ 393 (394)
T PRK11138 387 TVYAITR 393 (394)
T ss_pred eEEEEeC
Confidence 9988764
No 277
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.3e-07 Score=86.70 Aligned_cols=249 Identities=12% Similarity=0.122 Sum_probs=156.1
Q ss_pred EEEEEc-CCEEEEeeCCCcEEEEeCCcc-ccccccCccCEEEEEecCC----EEEE-----EeCCCeEEEEecCCCCcce
Q 047728 114 YSLAAA-GDLLYTGSDSKNIRVWKNQRE-FSGFKSNSGLVKAIVISNE----KIFS-----GHQDGKIRVWKVSSKDASI 182 (474)
Q Consensus 114 ~~~~~~-~~~l~tgs~dg~v~vwd~~~~-~~~~~~h~~~V~~i~~~~~----~l~s-----~~~dg~i~vwd~~~~~~~~ 182 (474)
|+..|+ .+.|+.=-..+.|.+|+...- ....+-|...|+.+.++.. .+++ .+.-..|+||...-.....
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~ 208 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ 208 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc
Confidence 455555 344444444567999986651 1222346777888888722 3332 4556679999887322111
Q ss_pred eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCC-EEEEEE-----------CCCcEEEEEcC
Q 047728 183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQN-LLYSAS-----------WDKTFKVWRTS 250 (474)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s-----------~dg~i~iwd~~ 250 (474)
.... +.++ ...=-.+.|++-+. +|+.++ ...++++.++.
T Consensus 209 ~~a~------ksFF-----------------------kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~ 259 (566)
T KOG2315|consen 209 PVAN------KSFF-----------------------KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ 259 (566)
T ss_pred hhhh------cccc-----------------------ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec
Confidence 0000 0000 00111345555332 222222 23568888887
Q ss_pred CcceeeeeeecCcceeEEEecCCC---eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE
Q 047728 251 DYKCLESVIAHDDAVNSIVAGFDG---LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG 327 (474)
Q Consensus 251 ~~~~~~~~~~~~~~v~~v~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 327 (474)
...+...+. ..++|.++.|++++ -++.|-.=..+.|||++- .....-.+++=.++-|+|.|++|+.+
T Consensus 260 g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~---------~~v~df~egpRN~~~fnp~g~ii~lA 329 (566)
T KOG2315|consen 260 GESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG---------KPVFDFPEGPRNTAFFNPHGNIILLA 329 (566)
T ss_pred CceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC---------CEeEeCCCCCccceEECCCCCEEEEe
Confidence 444444443 47899999999999 355566678899999872 23444456677889999999998887
Q ss_pred cC---CCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeC------CCcEEEEECCCCceEEEEeecCCccceE
Q 047728 328 SS---DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSA------DMSICIWRRKENEHICLSMLTGHSGPVK 398 (474)
Q Consensus 328 ~~---dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~~~h~~~v~ 398 (474)
+- .|.|-+||+.+.+.+ ..+......+..++|||+++++++. |+.++||+...... ....+. ....
T Consensus 330 GFGNL~G~mEvwDv~n~K~i-~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l-~~~~f~---sEL~ 404 (566)
T KOG2315|consen 330 GFGNLPGDMEVWDVPNRKLI-AKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL-HEKMFK---SELL 404 (566)
T ss_pred ecCCCCCceEEEeccchhhc-cccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee-ehhhhh---HhHh
Confidence 65 478999999985444 5566677788999999999999874 78899999875431 111121 1567
Q ss_pred EEEEeeCC
Q 047728 399 CLAVEKDD 406 (474)
Q Consensus 399 ~l~~~~~~ 406 (474)
.+.|-|-.
T Consensus 405 qv~W~P~~ 412 (566)
T KOG2315|consen 405 QVEWRPFN 412 (566)
T ss_pred heeeeecC
Confidence 77777643
No 278
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=4.2e-08 Score=94.82 Aligned_cols=338 Identities=14% Similarity=0.091 Sum_probs=197.6
Q ss_pred CcceeeeeeeeecCcEEEEEEc--------------CCEEEEeeCCCcEEEEeC--CccccccccCccCEEEEEec----
Q 047728 98 SPNVLIGSLVREEGHIYSLAAA--------------GDLLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVIS---- 157 (474)
Q Consensus 98 ~~~~~~~~l~~h~~~i~~~~~~--------------~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~---- 157 (474)
...+++.++..|...|+.+.+. .-+||++.-.|.|.+||. ...+..+..|..+|..++|-
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 3456777888899999888754 126788888999999994 45566778889999999884
Q ss_pred --CCEEEEEeCCCeEEEEecCCCCcceeeeecccCc---------cceee---------eeecCCCCeEEEeeeccceee
Q 047728 158 --NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPT---------FKDFI---------KCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 158 --~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~---------~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 217 (474)
.+.|++-....+|.+|+.++++............ ...++ .+..-+...-....++-.+-.
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s 202 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS 202 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence 3577888888899999999987765433322111 11111 111100000000000000001
Q ss_pred eccC----------------C---------eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecC
Q 047728 218 KHFD----------------A---------ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF 272 (474)
Q Consensus 218 ~h~~----------------~---------V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 272 (474)
.|.+ . .-.++|+|.-+.++-......+.++|++-..++....-..+.+.-+.+.|
T Consensus 203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP 282 (1062)
T KOG1912|consen 203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLP 282 (1062)
T ss_pred CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEecc
Confidence 1111 0 11356677555555555678899999998888888877778788888888
Q ss_pred CC---eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc-----------EEEEEEcCC-CCEEEEEcCCCcEEEee
Q 047728 273 DG---LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA-----------VTALAISPD-AAIVYCGSSDGLVNFWE 337 (474)
Q Consensus 273 ~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----------v~~l~~~~~-~~~l~~~~~dg~i~v~d 337 (474)
+. .|++.-.||.+.+|-.+.................... +......|. ...++.--.+|.+.+|.
T Consensus 283 ~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~ 362 (1062)
T KOG1912|consen 283 DPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQ 362 (1062)
T ss_pred CCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHh
Confidence 87 7999999999999976542221111000000011111 222233343 44555556788899999
Q ss_pred cCcccccceeeeecceeeEEEEecCC-------EEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC----
Q 047728 338 RELNLSHGGVLRGHKLAILCLVTAGN-------LVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD---- 406 (474)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~~~~~~-------~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~---- 406 (474)
+.++........+...-+.-|++++. .+..-+.|| +|....++....|-.
T Consensus 363 l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg-------------------~h~sGs~~~~~~p~p~~t~ 423 (1062)
T KOG1912|consen 363 LSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDG-------------------SHSSGSTCVRMRPMPELTK 423 (1062)
T ss_pred hhcCCcCcccccccccccccccccCceeehhhccccchhhcC-------------------CCCCCceeeecccCcccce
Confidence 88764433222222222333444332 222333333 333333333333221
Q ss_pred ------ccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728 407 ------ESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP 461 (474)
Q Consensus 407 ------~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p 461 (474)
.........++|.|...|+|.++|+.++ .....+..|...|.++.|--
T Consensus 424 ~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-------~v~~~fsvht~~VkgleW~g 477 (1062)
T KOG1912|consen 424 VENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-------AVAASFSVHTSLVKGLEWLG 477 (1062)
T ss_pred eecCCCCCccceeeeeEEeecCCceEEEEEecch-------hhhhhhcccccceeeeeecc
Confidence 1111222348999999999999999998 45556777888888887643
No 279
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.95 E-value=1.6e-06 Score=91.05 Aligned_cols=309 Identities=15% Similarity=0.096 Sum_probs=178.5
Q ss_pred cCcEEEEEEc--CCEEEEeeCCCcEEEE----eCCcc-ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCc
Q 047728 110 EGHIYSLAAA--GDLLYTGSDSKNIRVW----KNQRE-FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDA 180 (474)
Q Consensus 110 ~~~i~~~~~~--~~~l~tgs~dg~v~vw----d~~~~-~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~ 180 (474)
.+.|.++.+- .+-|+.+..+|.|.+. +.... +.....-...|.+++|+ ++.|+....+++|.+-+.+- +.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f-d~ 153 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF-DP 153 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc-eE
Confidence 4568887765 5678888889999988 54332 23333456789999999 55788888888888765322 11
Q ss_pred ceeeeeccc-CccceeeeeecC-------CCCeEE----Ee-----eeccceeeeccCCeeEEEecCCCCEEEEEEC---
Q 047728 181 SIHKRVGTL-PTFKDFIKCSMK-------PSNYIE----VR-----RHRNGLWIKHFDAISSLSMSEDQNLLYSASW--- 240 (474)
Q Consensus 181 ~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~----~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--- 240 (474)
+....+... ......+..... +...-. .+ ....+.+. +.+.-..|+|-.||.++|+.+.
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcC
Confidence 111111100 000011111000 000000 00 00112233 5556778999999999998774
Q ss_pred C---CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeC---CCcEEEEEcccCCCceeeeeeeeeecccccEE
Q 047728 241 D---KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA---DGTVKVWRRELQGKGTKHFFSQTLLKQECAVT 313 (474)
Q Consensus 241 d---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 313 (474)
. ..|+||+- .|+...+-..-.+--.+++|.|.| ++++... ...|.+|..+....+ . +..........|.
T Consensus 233 ~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg--e-F~l~~~~~~~~v~ 308 (928)
T PF04762_consen 233 TGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG--E-FTLRFDPEEEKVI 308 (928)
T ss_pred CCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee--e-EecCCCCCCceee
Confidence 2 57999984 466554444434445678999999 5554433 245777765422211 1 2222235567899
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEeecCcccc-cceeee-ecce--eeEEEEec-CCEEEEEeCCCcEEEEECC----CC--
Q 047728 314 ALAISPDAAIVYCGSSDGLVNFWERELNLS-HGGVLR-GHKL--AILCLVTA-GNLVFSGSADMSICIWRRK----EN-- 382 (474)
Q Consensus 314 ~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~-~~~~--~v~~~~~~-~~~l~sgs~dg~i~iwd~~----~~-- 382 (474)
.+.|++++..|++...|. |.+|-..+..- +.+.+. .... ..+.|++. ...|...+.+|.+..++.. .+
T Consensus 309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~ 387 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPG 387 (928)
T ss_pred EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCC
Confidence 999999999999987665 99998765521 111221 1111 22445542 4456666665666544431 11
Q ss_pred --------------ceEEE--------------EeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 383 --------------EHICL--------------SMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 383 --------------~~~~~--------------~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
....+ ..+ ....+|.+++|++++. .+++-..||.|.+|.....
T Consensus 388 ~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~--------~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 388 SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNS--------RFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCC--------eEEEEECCCCEEEEEecCC
Confidence 00001 111 1346899999999987 6888899999999996554
No 280
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.92 E-value=1e-06 Score=84.92 Aligned_cols=268 Identities=10% Similarity=0.094 Sum_probs=155.0
Q ss_pred cCCEEEEeeCCCcEEEEeCC--ccccccccCc----------cC-EEEEEecCCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728 119 AGDLLYTGSDSKNIRVWKNQ--REFSGFKSNS----------GL-VKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKR 185 (474)
Q Consensus 119 ~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~----------~~-V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 185 (474)
.++.+++++.+|.|.-+|.. +.+-...... .. ...+...++.++.++.+|.+..+|.++++......
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 46677777777777777633 2222111110 01 11244567888999999999999999998766443
Q ss_pred ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcce
Q 047728 186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV 265 (474)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v 265 (474)
..... ...+ .+ .+..++.+..++.|..+|.++|+.+..........
T Consensus 148 ~~~~~----------------------------~ssP----~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ 193 (394)
T PRK11138 148 VAGEA----------------------------LSRP----VV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL 193 (394)
T ss_pred CCCce----------------------------ecCC----EE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc
Confidence 22100 1111 11 24467778889999999999999887775421110
Q ss_pred -----eEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccc-ccEEEEEEcC--CCCEEEEEcCCCcEEEee
Q 047728 266 -----NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQE-CAVTALAISP--DAAIVYCGSSDGLVNFWE 337 (474)
Q Consensus 266 -----~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~--~~~~l~~~~~dg~i~v~d 337 (474)
..-... ++.++.++.+|.+..+|...+................ .....+..+| .+..+++++.+|.+..+|
T Consensus 194 ~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 194 TLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD 272 (394)
T ss_pred cccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence 111111 3467778889999988887654322111100000000 0011111222 355677778899999999
Q ss_pred cCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCc-cceEEEEEeeCCccccccceEE
Q 047728 338 RELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHS-GPVKCLAVEKDDESLSREKRWI 416 (474)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~ 416 (474)
..++...-....+ ....+...+..++.++.+|.+..+|..+++.. .....-. .......+. ++ .
T Consensus 273 ~~tG~~~W~~~~~---~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~--W~~~~~~~~~~~sp~v~-~g---------~ 337 (394)
T PRK11138 273 LRSGQIVWKREYG---SVNDFAVDGGRIYLVDQNDRVYALDTRGGVEL--WSQSDLLHRLLTAPVLY-NG---------Y 337 (394)
T ss_pred CCCCCEEEeecCC---CccCcEEECCEEEEEcCCCeEEEEECCCCcEE--EcccccCCCcccCCEEE-CC---------E
Confidence 9888654332211 11223446788888999999999999988742 2221111 111222222 22 6
Q ss_pred EEEecCCCcEEEEEccCCCC
Q 047728 417 LYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 417 l~s~s~Dg~i~vw~~~~~~~ 436 (474)
|+.++.||.|.+.|..+++.
T Consensus 338 l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 338 LVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred EEEEeCCCEEEEEECCCCCE
Confidence 78889999999999988743
No 281
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.92 E-value=2e-08 Score=84.79 Aligned_cols=205 Identities=18% Similarity=0.179 Sum_probs=120.2
Q ss_pred EEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEec
Q 047728 151 VKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMS 229 (474)
Q Consensus 151 V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 229 (474)
|..+.+. ...|+++..++.+.......+.+....+... .-.+...+..|..+-.+-+.+
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~--------------------~i~~~~~~a~~sep~p~~~~s 98 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDD--------------------GIDPFKVLAKNSEIDPNDACT 98 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhccc--------------------CcCceeeeeccCCCCCccccc
Confidence 5666666 5578888888777665544332211000000 000001122244433333334
Q ss_pred CCCCEEEEEECCCcEEEEEcCCccee-eeeeecCcceeEEEecCCCeEEEee------CCCcEEEEEcccCCCceeeeee
Q 047728 230 EDQNLLYSASWDKTFKVWRTSDYKCL-ESVIAHDDAVNSIVAGFDGLVFTGS------ADGTVKVWRRELQGKGTKHFFS 302 (474)
Q Consensus 230 ~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~v~~v~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 302 (474)
-.++.++++..||.+.+++.+....+ ..+..-...-.+.++...+.++... .-+..+.|+++..+. +.
T Consensus 99 ~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t-----~~ 173 (319)
T KOG4714|consen 99 MTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKT-----LI 173 (319)
T ss_pred ccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccc-----cc
Confidence 45678999999999999997652111 1111111111112222233233322 234456677664332 11
Q ss_pred eeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe---cCCEEEEEeCCCcEEEEE
Q 047728 303 QTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT---AGNLVFSGSADMSICIWR 378 (474)
Q Consensus 303 ~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~sgs~dg~i~iwd 378 (474)
.. ......|++++-+| ..+.+++|+.||.+.+||.++...+...+..|+..+..+.+ ++..|+++++||.+..||
T Consensus 174 ~~-~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 174 PS-KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred cc-ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 11 12223499999999 55677889999999999999887777788899988866554 578999999999999999
Q ss_pred CCC
Q 047728 379 RKE 381 (474)
Q Consensus 379 ~~~ 381 (474)
..+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 875
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.92 E-value=2.3e-07 Score=78.80 Aligned_cols=190 Identities=13% Similarity=0.038 Sum_probs=129.6
Q ss_pred CCEEEEeeCCCcEEEEeCCcc---ccccccCccCEE---EEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccc
Q 047728 120 GDLLYTGSDSKNIRVWKNQRE---FSGFKSNSGLVK---AIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFK 193 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~~~---~~~~~~h~~~V~---~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 193 (474)
-.+||.|+..|...+|..... ......|...|+ ..+-..-.+..++.|.++++.+++.+......
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--------- 154 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--------- 154 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee---------
Confidence 348999999999999974421 222223333222 22223446788899999999988765432111
Q ss_pred eeeeeecCCCCeEEEeeeccceeeeccCC--eeEEEecCCCCEEEEEECCCcEEEEEcCCc-ceeee--eeecCcceeEE
Q 047728 194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDA--ISSLSMSEDQNLLYSASWDKTFKVWRTSDY-KCLES--VIAHDDAVNSI 268 (474)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~--~~~~~~~v~~v 268 (474)
|... +.+++++++++++++.+....|..|.+... +.+.. .....+.-.+.
T Consensus 155 -------------------------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 155 -------------------------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred -------------------------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 3333 788999999999999999999999988643 32222 22233444566
Q ss_pred EecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC--EEEEEcCCCcEEEeecCccccc
Q 047728 269 VAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA--IVYCGSSDGLVNFWERELNLSH 344 (474)
Q Consensus 269 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~~~dg~i~v~d~~~~~~~ 344 (474)
.|+... .++++..||++.|||++........ .......|.+.++.+.|++.|. +|+..-.-+.+.+.|+++....
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~-~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAE-ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhh-hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 787777 9999999999999999976543222 2334455899999999998553 4555555678899999877554
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.90 E-value=2.6e-08 Score=95.70 Aligned_cols=267 Identities=13% Similarity=0.132 Sum_probs=174.2
Q ss_pred CEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC--CeeE
Q 047728 150 LVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD--AISS 225 (474)
Q Consensus 150 ~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~ 225 (474)
.+.++..+ ++-++.++.-| +.+-|++..-.... |..|.. .|-.
T Consensus 26 ~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr--------------------------------~l~h~tpw~vad 72 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPR--------------------------------WLHHITPWQVAD 72 (1081)
T ss_pred cccceeeccccchhhhhhhcC-eEEEeccCCCCCce--------------------------------eeeccCcchhcc
Confidence 34444444 77788888877 56667765322111 111222 3556
Q ss_pred EEecCC--CCEEEEEECCCcEEEEEcCC---cceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCcee
Q 047728 226 LSMSED--QNLLYSASWDKTFKVWRTSD---YKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTK 298 (474)
Q Consensus 226 l~~~~~--~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~ 298 (474)
+.|++. ..+-++......-.+|++.. ...-..+.+|...|+.+.|+++. .+++++.|-.+..||++....
T Consensus 73 ~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--- 149 (1081)
T KOG0309|consen 73 VQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--- 149 (1081)
T ss_pred eecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc---
Confidence 667663 33444444556677888753 33445667899999999999988 899999999999999986554
Q ss_pred eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEec---CCEEEEEeCCCcEE
Q 047728 299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTA---GNLVFSGSADMSIC 375 (474)
Q Consensus 299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~sgs~dg~i~ 375 (474)
.......-......+.|+-....+++.+....|.+||++.+..+...+++|...+..+.++ ...+.+.+.|++|+
T Consensus 150 --p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 150 --PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred --ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 3344444556677889998666666677888899999999988878888877777766654 56788999999999
Q ss_pred EEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC---CCCCcccccccCCCC
Q 047728 376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP---LVSTTQQHPLEGHGV 452 (474)
Q Consensus 376 iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~---~~~~~~~~~~~~~~~ 452 (474)
.||......... .......+|..-++.|-++.. ++.---.+..+.+++-++.... .....+.+.+.||..
T Consensus 228 fw~y~kSt~e~~-~~vtt~~piw~~r~~Pfg~g~------~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D 300 (1081)
T KOG0309|consen 228 FWDYSKSTTESK-RTVTTNFPIWRGRYLPFGEGY------CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD 300 (1081)
T ss_pred eecccccccccc-eeccccCcceeccccccCcee------EeccccCCeeeeeccccchhhhhccccCCcceeeecCcch
Confidence 999875543222 222345577777777766521 1211111224444433322111 112367788999999
Q ss_pred CCCccccCC
Q 047728 453 APNSLPYAP 461 (474)
Q Consensus 453 ~v~~l~~~p 461 (474)
.|....|.-
T Consensus 301 ~V~eFlWR~ 309 (1081)
T KOG0309|consen 301 VVLEFLWRK 309 (1081)
T ss_pred HHHHHhhhh
Confidence 988877754
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.90 E-value=4.4e-08 Score=87.85 Aligned_cols=157 Identities=17% Similarity=0.176 Sum_probs=110.6
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEEcCCcce----eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC----LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
....+..++.+++||.+..+....++++..... +..... ...-+++.+..+. ....+..-|.++-+|+-....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~- 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS- 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence 344556678889999998888877877754332 222211 2233444444443 444444444444443322111
Q ss_pred eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe-cCCEEEEEeCCCcEE
Q 047728 297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT-AGNLVFSGSADMSIC 375 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sgs~dg~i~ 375 (474)
.......+|-+-++.++|+||+++|+++..|..|++-.......+..+..||...|..++- ++..|++|+.|++|+
T Consensus 142 ---~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 142 ---GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLR 218 (390)
T ss_pred ---cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEE
Confidence 1346677899999999999999999999999999998777777777788899999988876 466789999999999
Q ss_pred EEECCCCc
Q 047728 376 IWRRKENE 383 (474)
Q Consensus 376 iwd~~~~~ 383 (474)
+||+.+++
T Consensus 219 ~Wd~~sgk 226 (390)
T KOG3914|consen 219 LWDITSGK 226 (390)
T ss_pred EEecccCC
Confidence 99999887
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=2.7e-09 Score=98.96 Aligned_cols=211 Identities=19% Similarity=0.236 Sum_probs=139.0
Q ss_pred eeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC-------cceeeeeeecCcceeEEEecCCCeEEEeeC
Q 047728 209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD-------YKCLESVIAHDDAVNSIVAGFDGLVFTGSA 281 (474)
Q Consensus 209 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~ 281 (474)
...+...+.+|+..|..++--.+.+-+++++.|++|++|.++. ..|..++..|+.+|.++.|..+.. ..++.
T Consensus 724 ~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc 802 (1034)
T KOG4190|consen 724 DHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC 802 (1034)
T ss_pred ceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec
Confidence 3344456788999999998877888999999999999999863 346778889999999999987752 23467
Q ss_pred CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccccceeee----e--ccee
Q 047728 282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLSHGGVLR----G--HKLA 354 (474)
Q Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~----~--~~~~ 354 (474)
||.|++||.-.+.... ...-....+..+.|.|+.- -+...++++ +...+|+++|.+.......... + ....
T Consensus 803 D~giHlWDPFigr~La-q~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLA-QMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cCcceeecccccchhH-hhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 8999999964332210 0001111122223333321 134445444 7788999999887644332221 1 2234
Q ss_pred eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEE-EEccC
Q 047728 355 ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM-WRVSE 433 (474)
Q Consensus 355 v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v-w~~~~ 433 (474)
.+++.+.|+.++++-..|.|.+.|.+++.. +..+.........++- |.++ .|+....|.++.| |.-..
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~v--INswrpmecdllqlaa-psdq--------~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKV--INSWRPMECDLLQLAA-PSDQ--------ALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCce--eccCCcccchhhhhcC-chhH--------HHHhhcccceeEeeehhcC
Confidence 466777899999999999999999999973 4444443333333332 3333 6777777888888 76544
No 286
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.9e-08 Score=89.29 Aligned_cols=246 Identities=18% Similarity=0.136 Sum_probs=165.5
Q ss_pred eecCcEEEEEEc-CCEEEEeeCCCcEEEEeCCc-----cccccccCccCEEEEEec--CCEEEEEeC-CCeEEEEecCCC
Q 047728 108 REEGHIYSLAAA-GDLLYTGSDSKNIRVWKNQR-----EFSGFKSNSGLVKAIVIS--NEKIFSGHQ-DGKIRVWKVSSK 178 (474)
Q Consensus 108 ~h~~~i~~~~~~-~~~l~tgs~dg~v~vwd~~~-----~~~~~~~h~~~V~~i~~~--~~~l~s~~~-dg~i~vwd~~~~ 178 (474)
-|++.|+.+.+. .+++.+++.||.++.|.-.. -+..+..|.+.|.+++.+ +..+.|.+. |..++++|+++-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 378889988888 88999999999999997433 355677888888888777 556777677 999999999987
Q ss_pred CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCCcEEEEEcCCcc--ee
Q 047728 179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDKTFKVWRTSDYK--CL 255 (474)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~--~~ 255 (474)
....-.....+|...++..+ ..+.+. .|+ +.-.++.+.++|-.... ..
T Consensus 87 DminmiKL~~lPg~a~wv~s--------------------kGd~~s---------~IAVs~~~sg~i~VvD~~~d~~q~~ 137 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTS--------------------KGDKIS---------LIAVSLFKSGKIFVVDGFGDFCQDG 137 (558)
T ss_pred chhhhcccccCCCceEEecC--------------------CCCeee---------eEEeecccCCCcEEECCcCCcCccc
Confidence 66544443333332211110 011111 222 23367889999876443 23
Q ss_pred eeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC---c------eeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728 256 ESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK---G------TKHFFSQTLLKQECAVTALAISPDAAIVY 325 (474)
Q Consensus 256 ~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~---~------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 325 (474)
..-.-|..+|..+.+.+-+ .+++....|.|.-|..+..-+ . ........+........++.|+|++..+.
T Consensus 138 ~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qis 217 (558)
T KOG0882|consen 138 YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIS 217 (558)
T ss_pred eecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccc
Confidence 3335689999999999988 888888899999998763100 0 00111222334567789999999999999
Q ss_pred EEcCCCcEEEeecCcccccceee-------------------------------eecc---eeeEEEEecCCEEEEEeCC
Q 047728 326 CGSSDGLVNFWERELNLSHGGVL-------------------------------RGHK---LAILCLVTAGNLVFSGSAD 371 (474)
Q Consensus 326 ~~~~dg~i~v~d~~~~~~~~~~~-------------------------------~~~~---~~v~~~~~~~~~l~sgs~d 371 (474)
+-..|..|++++..++.....+. ..|. ..-.+|.-.+++|+-|+.=
T Consensus 218 tl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~ 297 (558)
T KOG0882|consen 218 TLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL 297 (558)
T ss_pred ccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce
Confidence 99999999999977664321110 0111 1124555568899888766
Q ss_pred CcEEEEECCCCc
Q 047728 372 MSICIWRRKENE 383 (474)
Q Consensus 372 g~i~iwd~~~~~ 383 (474)
| |++.++.++.
T Consensus 298 g-ikvin~~tn~ 308 (558)
T KOG0882|consen 298 G-IKVINLDTNT 308 (558)
T ss_pred e-EEEEEeecCe
Confidence 5 7888888776
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.89 E-value=2e-06 Score=91.97 Aligned_cols=248 Identities=11% Similarity=0.043 Sum_probs=144.5
Q ss_pred CCEEEEeeCCCcEEEEeCCccccccccC---------------ccCEEEEEec--CCEEEEEe-CCCeEEEEecCCCCcc
Q 047728 120 GDLLYTGSDSKNIRVWKNQREFSGFKSN---------------SGLVKAIVIS--NEKIFSGH-QDGKIRVWKVSSKDAS 181 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~~~~~~~~~h---------------~~~V~~i~~~--~~~l~s~~-~dg~i~vwd~~~~~~~ 181 (474)
++++++-+.++.|++||....+....+. -..-..|+++ ++.|+.+. ..+.|+++|+.++...
T Consensus 580 g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~ 659 (1057)
T PLN02919 580 NRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVR 659 (1057)
T ss_pred CeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE
Confidence 5577777778889999855332211111 1124667776 45555554 4567888888765432
Q ss_pred eeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeee
Q 047728 182 IHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIA 260 (474)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 260 (474)
.....+.... ..... ..... .....-..++++| ++.++++.+.++.|++||..++... .+.+
T Consensus 660 tlag~G~~g~-------~~~gg--------~~~~~-~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G 722 (1057)
T PLN02919 660 TLAGNGTKGS-------DYQGG--------KKGTS-QVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG 722 (1057)
T ss_pred EEeccCcccC-------CCCCC--------hhhhH-hhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence 1111000000 00000 00000 0012335899999 5556667678899999998776542 2211
Q ss_pred ---------------cCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeee-------eeeeee--------cc
Q 047728 261 ---------------HDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHF-------FSQTLL--------KQ 308 (474)
Q Consensus 261 ---------------~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~--------~~ 308 (474)
.-.....|+++|++ ++++-..++.|++||+.......... ....+. ..
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 01235678999997 45566667999999987543210000 000000 01
Q ss_pred cccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee--------------cceeeEEEEecCCEEEEEeCCCcE
Q 047728 309 ECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG--------------HKLAILCLVTAGNLVFSGSADMSI 374 (474)
Q Consensus 309 ~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~l~sgs~dg~i 374 (474)
-.....++++++|+++++-..++.|++||..++......-.+ ....-++++++|+++++-+.++.|
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 123468999999998888889999999998766432111011 112236778889998888899999
Q ss_pred EEEECCCCce
Q 047728 375 CIWRRKENEH 384 (474)
Q Consensus 375 ~iwd~~~~~~ 384 (474)
++||+.+++.
T Consensus 883 rvid~~~~~~ 892 (1057)
T PLN02919 883 RYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCcc
Confidence 9999988753
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=3.7e-06 Score=81.01 Aligned_cols=173 Identities=13% Similarity=0.074 Sum_probs=107.3
Q ss_pred CeeEEEecCCCCE-EEEEEC---CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCC--cEEEEEcccC
Q 047728 222 AISSLSMSEDQNL-LYSASW---DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADG--TVKVWRRELQ 293 (474)
Q Consensus 222 ~V~~l~~~~~~~~-l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg--~i~iwd~~~~ 293 (474)
.+..-.|+|+++. ++..+. +..|.++|+.+++..... ...+......|+||| .+++.+.++ .|.++|+..+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6678899999985 554443 356999999887654433 345556677899999 444454454 4666666533
Q ss_pred CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CC--cEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeC
Q 047728 294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DG--LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSA 370 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~ 370 (474)
.. ..+...........|+|||+.|+..+. .+ .|.++|+.++....-...+. ....++|+|++|+....
T Consensus 268 ~~-------~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 268 TL-------TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--NNSSVSTYKNYIVYSSR 338 (419)
T ss_pred cE-------EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--cCceECCCCCEEEEEEc
Confidence 21 122222222345689999987776653 33 57777887664422222222 23489999998877664
Q ss_pred C---------CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcc
Q 047728 371 D---------MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDES 408 (474)
Q Consensus 371 d---------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 408 (474)
. ..|.+.|+.+++.. .+... .......|+||++.
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~---~LT~~-~~~~~p~~SPDG~~ 381 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIR---RLTAN-GVNQFPRFSSDGGS 381 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeE---ECCCC-CCcCCeEECCCCCE
Confidence 3 36888888887643 33322 22335889999984
No 289
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=2.6e-06 Score=79.77 Aligned_cols=304 Identities=10% Similarity=0.099 Sum_probs=170.7
Q ss_pred cCcEEEEEEcCCEEEEeeCCCcEEEEeCCc--cccccccCccCEEEEEec--CCEEEEEeC-----------CCeEEEEe
Q 047728 110 EGHIYSLAAAGDLLYTGSDSKNIRVWKNQR--EFSGFKSNSGLVKAIVIS--NEKIFSGHQ-----------DGKIRVWK 174 (474)
Q Consensus 110 ~~~i~~~~~~~~~l~tgs~dg~v~vwd~~~--~~~~~~~h~~~V~~i~~~--~~~l~s~~~-----------dg~i~vwd 174 (474)
+.....++|.|.||+|--.-| |.+|--.. .++.|. |. .|.-+.|+ .+||+|=+. ...++|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 344567778899999998887 89995332 222222 33 47778887 668888652 25699999
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC 254 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 254 (474)
+.++.....+..-. .....-.-..|+.|++++|.-.. ..|.||+..+..+
T Consensus 289 I~tG~lkrsF~~~~-----------------------------~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l 338 (698)
T KOG2314|consen 289 IATGLLKRSFPVIK-----------------------------SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML 338 (698)
T ss_pred ccccchhcceeccC-----------------------------CCccccceEEeccCCceeEEecc-ceEEEEecCceee
Confidence 99997765443210 01111224578999999987776 5599999877554
Q ss_pred eeeeeecCcceeEEEecCCC-eEEEeeC--C---CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728 255 LESVIAHDDAVNSIVAGFDG-LVFTGSA--D---GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS 328 (474)
Q Consensus 255 ~~~~~~~~~~v~~v~~~~~~-~l~~~~~--d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 328 (474)
+..-...-..|....|+|.+ .|+.=.. + ..+.+-.+..... +....-+.-.=..+-|..+|.+|++--
T Consensus 339 ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~------iRt~nlfnVsDckLhWQk~gdyLcvkv 412 (698)
T KOG2314|consen 339 LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE------IRTKNLFNVSDCKLHWQKSGDYLCVKV 412 (698)
T ss_pred ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce------eeeccceeeeccEEEeccCCcEEEEEE
Confidence 44333344668888899986 3332111 1 1122222221111 111111111122355666777776521
Q ss_pred C-------C---CcEEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeC---CCcEEEEECCCC--ceEEEEeec
Q 047728 329 S-------D---GLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSA---DMSICIWRRKEN--EHICLSMLT 391 (474)
Q Consensus 329 ~-------d---g~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~---dg~i~iwd~~~~--~~~~~~~~~ 391 (474)
. . ..+.|+.++......... .-+..++.| .|.|+.+++-+. ..++.+|.+++. +...+..+.
T Consensus 413 dR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d 491 (698)
T KOG2314|consen 413 DRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD 491 (698)
T ss_pred EeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc
Confidence 1 1 124455555443332222 233344444 456777665543 367889988732 222233333
Q ss_pred CCccceEEEEEeeCCccccccceEEEEEe---cCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCc
Q 047728 392 GHSGPVKCLAVEKDDESLSREKRWILYSG---SLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGR 468 (474)
Q Consensus 392 ~h~~~v~~l~~~~~~~~~~~~~~~~l~s~---s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~ 468 (474)
. ...+.+.|+|.|+ +++.+ |..|.+.++|+...... ......| ...+.+ .|.|-||
T Consensus 492 k--~~~N~vfwsPkG~--------fvvva~l~s~~g~l~F~D~~~a~~k------~~~~~eh-~~at~v----eWDPtGR 550 (698)
T KOG2314|consen 492 K--KFANTVFWSPKGR--------FVVVAALVSRRGDLEFYDTDYADLK------DTASPEH-FAATEV----EWDPTGR 550 (698)
T ss_pred c--cccceEEEcCCCc--------EEEEEEecccccceEEEecchhhhh------hccCccc-cccccc----eECCCCC
Confidence 3 4578899999998 55554 45788999998752111 0111112 234555 4566699
Q ss_pred eeeccC
Q 047728 469 ICQKRS 474 (474)
Q Consensus 469 ~l~~~s 474 (474)
+++++|
T Consensus 551 YvvT~s 556 (698)
T KOG2314|consen 551 YVVTSS 556 (698)
T ss_pred EEEEee
Confidence 999875
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.86 E-value=5.6e-06 Score=71.67 Aligned_cols=191 Identities=12% Similarity=0.084 Sum_probs=116.0
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee-------cCcceeEEEecCCC-------eEEEeeCCCcEEE
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA-------HDDAVNSIVAGFDG-------LVFTGSADGTVKV 287 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~v~~~~~~-------~l~~~~~dg~i~i 287 (474)
.=+-++|+||+.+||.+...|+|+++|+.. ..+..+.. -..+|..+.|.+-. .|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 456799999999999999999999999865 33333322 12456666554422 6778888999888
Q ss_pred EEcccC--CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe-----
Q 047728 288 WRRELQ--GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT----- 360 (474)
Q Consensus 288 wd~~~~--~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~----- 360 (474)
|-+..+ +.................|.++.++|..++|++|+.... +.+ ........++++..
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~-----~s~a~~~GLtaWRiL~~~P 192 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG-----MSKASSCGLTAWRILSDSP 192 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc-----cccccccCceEEEEcCCCC
Confidence 876432 111111112222334678999999999998888876432 000 01112222333322
Q ss_pred cCCEEEEEeCCCc------EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 361 AGNLVFSGSADMS------ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 361 ~~~~l~sgs~dg~------i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
..+. ++...|+. -.+|.+-+... ..........|..|..+||+. +||+...+|.|.+|++..-
T Consensus 193 yyk~-v~~~~~~~~~~~~~~~~~~~~~~~~--fs~~~~~~d~i~kmSlSPdg~--------~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 193 YYKQ-VTSSEDDITASSKRRGLLRIPSFKF--FSRQGQEQDGIFKMSLSPDGS--------LLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred cEEE-ccccCccccccccccceeeccceee--eeccccCCCceEEEEECCCCC--------EEEEEEcCCeEEEEecCcc
Confidence 1122 12222222 13343333221 111223457899999999999 9999999999999999875
Q ss_pred C
Q 047728 435 A 435 (474)
Q Consensus 435 ~ 435 (474)
.
T Consensus 262 ~ 262 (282)
T PF15492_consen 262 R 262 (282)
T ss_pred h
Confidence 3
No 291
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.83 E-value=2.5e-06 Score=76.21 Aligned_cols=222 Identities=14% Similarity=0.092 Sum_probs=133.1
Q ss_pred CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEE
Q 047728 167 DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKV 246 (474)
Q Consensus 167 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i 246 (474)
+|+|..||..+++......... -.....+. ..+++..+++++.++.|..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~------------------------------~~~~~~~~-~~~~~~~v~~~~~~~~l~~ 50 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP------------------------------GIGGPVAT-AVPDGGRVYVASGDGNLYA 50 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS------------------------------SCSSEEET-EEEETTEEEEEETTSEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCC------------------------------CCCCccce-EEEeCCEEEEEcCCCEEEE
Confidence 6889999998887765543321 01111111 2235667888899999999
Q ss_pred EEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE
Q 047728 247 WRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC 326 (474)
Q Consensus 247 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 326 (474)
||..+|+.+..... ...+.......++.+++++.++.|..+|.+++........ ....... ..........+..+++
T Consensus 51 ~d~~tG~~~W~~~~-~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ 127 (238)
T PF13360_consen 51 LDAKTGKVLWRFDL-PGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYL-TSSPPAG-VRSSSSPAVDGDRLYV 127 (238)
T ss_dssp EETTTSEEEEEEEC-SSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE--SSCTCS-TB--SEEEEETTEEEE
T ss_pred EECCCCCEEEEeec-cccccceeeecccccccccceeeeEecccCCcceeeeecc-ccccccc-cccccCceEecCEEEE
Confidence 99999999888775 3332222233455777777888999999876654221100 0000111 1122222223788888
Q ss_pred EcCCCcEEEeecCcccccceeeeeccee----------eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccc
Q 047728 327 GSSDGLVNFWERELNLSHGGVLRGHKLA----------ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGP 396 (474)
Q Consensus 327 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~----------v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~ 396 (474)
+..++.|..+|++++............. .......+..++.++.++.+.-+|+.+++.. .... ...
T Consensus 128 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~--w~~~--~~~ 203 (238)
T PF13360_consen 128 GTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKL--WSKP--ISG 203 (238)
T ss_dssp EETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEE--EEEC--SS-
T ss_pred EeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEE--EEec--CCC
Confidence 8889999999999887654433221110 1222233448888888886444499998843 2222 222
Q ss_pred eEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 397 VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 397 v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
+..+ ...++. .|+.++.++.|..||+.+++
T Consensus 204 ~~~~-~~~~~~--------~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 204 IYSL-PSVDGG--------TLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ECEC-EECCCT--------EEEEEETTTEEEEEETTTTE
T ss_pred ccCC-ceeeCC--------EEEEEeCCCEEEEEECCCCC
Confidence 3332 334455 67777799999999999884
No 292
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.82 E-value=1.1e-07 Score=82.40 Aligned_cols=256 Identities=16% Similarity=0.256 Sum_probs=152.9
Q ss_pred CccCEEEEEec--CCEEEEEeCCCeEEEEecCCCC-cce--eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC
Q 047728 147 NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKD-ASI--HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD 221 (474)
Q Consensus 147 h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 221 (474)
....|+++.|. |.+|++|...|.|.++.-+... +.. ....+.....-+++. -..-..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLk------------------SleieE 86 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLK------------------SLEIEE 86 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhh------------------hccHHH
Confidence 45679999998 7899999999999999866543 110 000000000000000 011334
Q ss_pred CeeEEEecCCC--CEEEEEECCCcEEEEEcCCcce-------------------e-----------------------ee
Q 047728 222 AISSLSMSEDQ--NLLYSASWDKTFKVWRTSDYKC-------------------L-----------------------ES 257 (474)
Q Consensus 222 ~V~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~~~-------------------~-----------------------~~ 257 (474)
.|..+.|..++ ..++..+.|.+|++|.+..... + +.
T Consensus 87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv 166 (460)
T COG5170 87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV 166 (460)
T ss_pred HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence 57788887643 4566777899999998753210 0 00
Q ss_pred e-eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeee--eeeeecccccEEEEEEcC-CCCEEEEEcCCCcE
Q 047728 258 V-IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFF--SQTLLKQECAVTALAISP-DAAIVYCGSSDGLV 333 (474)
Q Consensus 258 ~-~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i 333 (474)
. ..|.--++++.+..|...+....|-.|.+|+++.........- ......-...|++..|+| ..+.+.-.+..|.|
T Consensus 167 yaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 167 YANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred ccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 1 2456667788888887555666788999999875433211111 111112235688999999 45566677889999
Q ss_pred EEeecCcccccce-------eeee--------cceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCc--
Q 047728 334 NFWERELNLSHGG-------VLRG--------HKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHS-- 394 (474)
Q Consensus 334 ~v~d~~~~~~~~~-------~~~~--------~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~-- 394 (474)
++-|++....... .+.+ -...+ ..|+++|+++++-+. -+|+|||++..+. ++.++.-|.
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~-pikTi~~h~~l 324 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN-PIKTIPMHCDL 324 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC-CceeechHHHH
Confidence 9999984421110 0111 11122 456677888887653 5899999986654 355554442
Q ss_pred ----------cce---EEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728 395 ----------GPV---KCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 395 ----------~~v---~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
..| ..+.|+-|.. .+.+|+.....-++-
T Consensus 325 ~~~l~d~YEnDaifdkFeisfSgd~~--------~v~sgsy~NNfgiyp 365 (460)
T COG5170 325 MDELNDVYENDAIFDKFEISFSGDDK--------HVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHhhhhccceeeeEEEEecCCcc--------cccccccccceeeec
Confidence 223 3467777777 677777766666665
No 293
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.1e-06 Score=86.31 Aligned_cols=223 Identities=14% Similarity=0.158 Sum_probs=148.3
Q ss_pred cEEEEEEcCCEEEEeeCCCcEEEEeCCccc-cccccCccC-EEEEEecC--CEEEEEeCCCe-----EEEEecCCCCcce
Q 047728 112 HIYSLAAAGDLLYTGSDSKNIRVWKNQREF-SGFKSNSGL-VKAIVISN--EKIFSGHQDGK-----IRVWKVSSKDASI 182 (474)
Q Consensus 112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~~~~-~~~~~h~~~-V~~i~~~~--~~l~s~~~dg~-----i~vwd~~~~~~~~ 182 (474)
.|.|++.++..+|.|+.+|.|.+.+..-.+ ..++++... |..+...+ +.|++.+.|+. |+||+++..+...
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 799999999999999999999998866444 888888777 55555554 47888777654 8999998754221
Q ss_pred eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC--C--cceeeee
Q 047728 183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS--D--YKCLESV 258 (474)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~--~--~~~~~~~ 258 (474)
... .+...+.-.........++.+++++.+-+.+|+|-.+|.|..+.-. . +....-.
T Consensus 107 sP~-------------------c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~ 167 (933)
T KOG2114|consen 107 SPQ-------------------CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS 167 (933)
T ss_pred Ccc-------------------eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee
Confidence 000 0000000000111256789999999999999999999999988431 1 2222222
Q ss_pred eecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEee
Q 047728 259 IAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337 (474)
Q Consensus 259 ~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d 337 (474)
.....+|+.+++..++ .++-+..-..|.+|.+.... ........+...+.|.++++....+++++. ..+.+||
T Consensus 168 ~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-----p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~ 241 (933)
T KOG2114|consen 168 HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-----PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYD 241 (933)
T ss_pred ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-----cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEc
Confidence 2346799999999888 32333445678899887332 134456778889999999987665665543 4699999
Q ss_pred cCcccccceeeeecceeeEEEE
Q 047728 338 RELNLSHGGVLRGHKLAILCLV 359 (474)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~~ 359 (474)
............+|+....+++
T Consensus 242 sd~~~~cfaf~~g~kk~~~~~~ 263 (933)
T KOG2114|consen 242 SDGRGPCFAFEVGEKKEMLVFS 263 (933)
T ss_pred CCCcceeeeecCCCeEEEEEEe
Confidence 8866554444446665555444
No 294
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.82 E-value=3.3e-05 Score=71.58 Aligned_cols=254 Identities=11% Similarity=0.066 Sum_probs=140.8
Q ss_pred cceeeeeeeeecCcEEEEEEcCCEEEEeeC----------CCcEEEEeCCc--ccccccc---------CccCEEEEEec
Q 047728 99 PNVLIGSLVREEGHIYSLAAAGDLLYTGSD----------SKNIRVWKNQR--EFSGFKS---------NSGLVKAIVIS 157 (474)
Q Consensus 99 ~~~~~~~l~~h~~~i~~~~~~~~~l~tgs~----------dg~v~vwd~~~--~~~~~~~---------h~~~V~~i~~~ 157 (474)
..+.++++..-..+--.++++|+.|+++.. +..|.+||... .+..+.. -......+.-+
T Consensus 36 ~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~d 115 (352)
T TIGR02658 36 AGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPD 115 (352)
T ss_pred CCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCC
Confidence 345555554322222238899887777655 78899999553 3322321 11123344444
Q ss_pred CCEEEEEe-C-CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEE
Q 047728 158 NEKIFSGH-Q-DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLL 235 (474)
Q Consensus 158 ~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 235 (474)
+++|+... . +..|.+.|+.+++......+... .. .+ -..+-..+..+.|+..+
T Consensus 116 gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~---~~--------------------vy--~t~e~~~~~~~~Dg~~~ 170 (352)
T TIGR02658 116 NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC---YH--------------------IF--PTANDTFFMHCRDGSLA 170 (352)
T ss_pred CCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC---cE--------------------EE--EecCCccEEEeecCceE
Confidence 77787666 3 68899999999876544332110 00 00 01111112222333333
Q ss_pred EEE-ECCCcEEEEEcCCcceeeeeeecCcceeEE-EecC-CC-eEEEeeCCCcEEEEEcccCCCceeeeeee-ee-----
Q 047728 236 YSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSI-VAGF-DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQ-TL----- 305 (474)
Q Consensus 236 ~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v-~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~----- 305 (474)
... ..+|.... .+ ...+.....++..- .+.+ ++ .+++... |.|.+.|+............. ..
T Consensus 171 ~v~~d~~g~~~~---~~---~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
T TIGR02658 171 KVGYGTKGNPKI---KP---TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKAD 243 (352)
T ss_pred EEEecCCCceEE---ee---eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccccc
Confidence 221 12232110 00 00011100000000 2344 66 4444444 999999975433221111110 01
Q ss_pred ecccccEEEEEEcCCCCEEEEEc----------CCCcEEEeecCcccccceeeeecceeeEEEEecCC-EEEEEe-CCCc
Q 047728 306 LKQECAVTALAISPDAAIVYCGS----------SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGN-LVFSGS-ADMS 373 (474)
Q Consensus 306 ~~~~~~v~~l~~~~~~~~l~~~~----------~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sgs-~dg~ 373 (474)
.-....+.-++++++++.+++.. ..+.|.++|..+.+....+..++...-+.++++++ +|++.. .++.
T Consensus 244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 244 GWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred ccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc
Confidence 11234455599999999888843 22579999999999888888888888899999999 887666 5788
Q ss_pred EEEEECCCCce
Q 047728 374 ICIWRRKENEH 384 (474)
Q Consensus 374 i~iwd~~~~~~ 384 (474)
|.++|..+++.
T Consensus 324 VsViD~~t~k~ 334 (352)
T TIGR02658 324 LYIFDAETGKE 334 (352)
T ss_pred EEEEECcCCeE
Confidence 99999998873
No 295
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.6e-06 Score=81.14 Aligned_cols=309 Identities=13% Similarity=0.069 Sum_probs=180.1
Q ss_pred CCCCCCcCccCCCCCCCCCCCCCcceeeeeeeeecCcEEEEEEcCCEEEEeeC-----------CCcEEEEeCC--cccc
Q 047728 76 SKSPWSTHHVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSD-----------SKNIRVWKNQ--REFS 142 (474)
Q Consensus 76 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~i~~~~~~~~~l~tgs~-----------dg~v~vwd~~--~~~~ 142 (474)
.+||-++...+.-.+.+..+.=+....++.+.+..-.-..++|+.+||+|=+. ...++|||.. ....
T Consensus 217 ~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkr 296 (698)
T KOG2314|consen 217 RWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKR 296 (698)
T ss_pred EecCCceEEEEEeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhc
Confidence 35565555554433333333222223333333222234567777889998653 2468999944 3444
Q ss_pred ccccC--ccCE-EEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 143 GFKSN--SGLV-KAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 143 ~~~~h--~~~V-~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
.|..- ...+ .-..|+ +.+++--..| .|.||+..+-.+.....+
T Consensus 297 sF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Ksl------------------------------- 344 (698)
T KOG2314|consen 297 SFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSL------------------------------- 344 (698)
T ss_pred ceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeeccccc-------------------------------
Confidence 44331 1111 223444 5566655554 699998776433221111
Q ss_pred eccCCeeEEEecCCCCEEEEEEC-----CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEE----------eeC
Q 047728 218 KHFDAISSLSMSEDQNLLYSASW-----DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFT----------GSA 281 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~----------~~~ 281 (474)
.-..|....|+|.+++||-=.. -..+.+-.+.+++.+++...+.-.=..+.|-.+| +|.. .+.
T Consensus 345 -ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~ 423 (698)
T KOG2314|consen 345 -KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQ 423 (698)
T ss_pred -CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccce
Confidence 3346788899998887775332 2456677777777777666555444456666666 3332 112
Q ss_pred CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC---CCcEEEeecCccc---ccceeeeecceee
Q 047728 282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS---DGLVNFWERELNL---SHGGVLRGHKLAI 355 (474)
Q Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---dg~i~v~d~~~~~---~~~~~~~~~~~~v 355 (474)
-..+.|+.++.... ..........|...+|.|.|+.+++-+. ..++.+|.+++.. .+...+......-
T Consensus 424 f~n~eIfrireKdI------pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~ 497 (698)
T KOG2314|consen 424 FSNLEIFRIREKDI------PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANT 497 (698)
T ss_pred EeeEEEEEeeccCC------CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccce
Confidence 22355666654332 2223344567899999999987776543 3568889877421 1122233344556
Q ss_pred EEEEecCCEEEEEe---CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC------CCcE
Q 047728 356 LCLVTAGNLVFSGS---ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL------DKSV 426 (474)
Q Consensus 356 ~~~~~~~~~l~sgs---~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~------Dg~i 426 (474)
+.++|.|++++.+. ..|.+.++|....... ......| ...+.+.|.|.|+ |+++++. |.--
T Consensus 498 vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k-~~~~~eh-~~at~veWDPtGR--------YvvT~ss~wrhk~d~GY 567 (698)
T KOG2314|consen 498 VFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK-DTASPEH-FAATEVEWDPTGR--------YVVTSSSSWRHKVDNGY 567 (698)
T ss_pred EEEcCCCcEEEEEEecccccceEEEecchhhhh-hccCccc-cccccceECCCCC--------EEEEeeehhhhccccce
Confidence 78899999988765 5789999999853321 1122233 3568899999999 8998875 4456
Q ss_pred EEEEccC
Q 047728 427 KMWRVSE 433 (474)
Q Consensus 427 ~vw~~~~ 433 (474)
+||++..
T Consensus 568 ri~tfqG 574 (698)
T KOG2314|consen 568 RIFTFQG 574 (698)
T ss_pred EEEEeec
Confidence 7887754
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.74 E-value=2.2e-05 Score=82.58 Aligned_cols=234 Identities=17% Similarity=0.183 Sum_probs=146.9
Q ss_pred CccCEEEEEec--CCEEEEEeCCCeEEEE----ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc
Q 047728 147 NSGLVKAIVIS--NEKIFSGHQDGKIRVW----KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF 220 (474)
Q Consensus 147 h~~~V~~i~~~--~~~l~s~~~dg~i~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 220 (474)
..+.|.++.+- .+.++.+..+|.|.+. +.+...... ++ .-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~---VG------------------------------~vd 120 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEI---VG------------------------------SVD 120 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEE---EE------------------------------EEc
Confidence 45678888876 5678889999999998 433332211 11 145
Q ss_pred CCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee------------------------eeee----------------
Q 047728 221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE------------------------SVIA---------------- 260 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------------------------~~~~---------------- 260 (474)
..|.+++|+||+.+|+.++.+++|.+-+- +.+.+. .|.+
T Consensus 121 ~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 121 SGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred CcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 68999999999999999999998887632 111111 1100
Q ss_pred --------cCcceeEEEecCCC-eEEEeeC---C---CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728 261 --------HDDAVNSIVAGFDG-LVFTGSA---D---GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY 325 (474)
Q Consensus 261 --------~~~~v~~v~~~~~~-~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 325 (474)
..+.-..|.|-.|| ++++.+- . ..+|||+.+. . +......-.+--.+++|.|.|++||
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG--~-----L~stSE~v~gLe~~l~WrPsG~lIA 272 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG--E-----LQSTSEPVDGLEGALSWRPSGNLIA 272 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc--e-----EEeccccCCCccCCccCCCCCCEEE
Confidence 22344568899999 6666553 2 5799998761 1 1222223333345789999999999
Q ss_pred EEcC---CCcEEEeecCcccccceeee---ecce--eeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC-ccc
Q 047728 326 CGSS---DGLVNFWERELNLSHGGVLR---GHKL--AILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH-SGP 396 (474)
Q Consensus 326 ~~~~---dg~i~v~d~~~~~~~~~~~~---~~~~--~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h-~~~ 396 (474)
+.-. ...|.+|..+ +.....+.. .... .-+.|+.++..|+..-.|. |.+|-..+..+.....+.-. ...
T Consensus 273 ~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~ 350 (928)
T PF04762_consen 273 SSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES 350 (928)
T ss_pred EEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC
Confidence 8765 3456677644 333322221 1223 3466666899999987665 99999988876655555532 334
Q ss_pred eEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728 397 VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 397 v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
+..+.|+|.... .|.....+|.+..++
T Consensus 351 ~~~~~Wdpe~p~-------~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 351 VNFVKWDPEKPL-------RLHVLTSNGQYEIYD 377 (928)
T ss_pred CCceEECCCCCC-------EEEEEecCCcEEEEE
Confidence 556999997653 355555545554443
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.74 E-value=2.7e-07 Score=82.92 Aligned_cols=158 Identities=18% Similarity=0.245 Sum_probs=101.0
Q ss_pred eeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc---EEEeecCc
Q 047728 265 VNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL---VNFWEREL 340 (474)
Q Consensus 265 v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~---i~v~d~~~ 340 (474)
+..+..++.+ +++++..+....+++++...+..+....... ...-+++.|..+...+.++..-|. +.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v---~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV---PKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec---ccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 3444556666 6667777777777777654432222112222 222344445554555554444444 44444443
Q ss_pred ccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEE
Q 047728 341 NLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY 418 (474)
Q Consensus 341 ~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~ 418 (474)
+ ......+|-..+ +.+++|+++++++..|..|++-.......+ -...-||..-|..++.-++. .|+
T Consensus 142 ~--~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I-esfclGH~eFVS~isl~~~~---------~Ll 209 (390)
T KOG3914|consen 142 G--RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI-ESFCLGHKEFVSTISLTDNY---------LLL 209 (390)
T ss_pred c--CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch-hhhccccHhheeeeeeccCc---------eee
Confidence 2 223455776655 567789999999999999999877544321 23345799999999998875 589
Q ss_pred EecCCCcEEEEEccCCCCC
Q 047728 419 SGSLDKSVKMWRVSEQAPP 437 (474)
Q Consensus 419 s~s~Dg~i~vw~~~~~~~~ 437 (474)
++|.|++|++||+.+++..
T Consensus 210 S~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 210 SGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ecCCCCcEEEEecccCCcc
Confidence 9999999999999998544
No 298
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=9.1e-07 Score=86.35 Aligned_cols=183 Identities=13% Similarity=0.120 Sum_probs=128.4
Q ss_pred ccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEE
Q 047728 148 SGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLS 227 (474)
Q Consensus 148 ~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 227 (474)
...+.|+++++..|+-|..+|.|++.+.+.... .. ..|...
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~-~~---------------------------------~~~s~~----- 79 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPK-TN---------------------------------FDHSSS----- 79 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCccc-cc---------------------------------cccccc-----
Confidence 446777778888888888888888887765421 00 013222
Q ss_pred ecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCC------CeEEEeeCCCcEEEEEcccCCCceeeee
Q 047728 228 MSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD------GLVFTGSADGTVKVWRRELQGKGTKHFF 301 (474)
Q Consensus 228 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 301 (474)
..+|.++++|+.||+|.|-.+-+.+...++. ...++.+++++|+ ..+++|+.-| +.++..+-.+...
T Consensus 80 -~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~---- 152 (846)
T KOG2066|consen 80 -ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD---- 152 (846)
T ss_pred -ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc----
Confidence 4579999999999999999998887776664 4678999999998 2799999999 8888655433311
Q ss_pred eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee-----EEEEe-cCCEEEEEeCCCcEE
Q 047728 302 SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI-----LCLVT-AGNLVFSGSADMSIC 375 (474)
Q Consensus 302 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v-----~~~~~-~~~~l~sgs~dg~i~ 375 (474)
........++|.++.|. |+++|-++.+| |++||+.....+..+...+...- ..+.+ +...|+.|-. .+|+
T Consensus 153 ~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~-d~v~ 228 (846)
T KOG2066|consen 153 SVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG-DSVK 228 (846)
T ss_pred ceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC-CeEE
Confidence 12456678899999996 77888777666 99999988877665555543222 22333 2445555544 4688
Q ss_pred EEECC
Q 047728 376 IWRRK 380 (474)
Q Consensus 376 iwd~~ 380 (474)
|..++
T Consensus 229 i~~I~ 233 (846)
T KOG2066|consen 229 ICSIK 233 (846)
T ss_pred EEEEe
Confidence 88876
No 299
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.71 E-value=7.4e-08 Score=84.65 Aligned_cols=145 Identities=13% Similarity=0.177 Sum_probs=106.7
Q ss_pred eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc---cceeeeec
Q 047728 275 LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS---HGGVLRGH 351 (474)
Q Consensus 275 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~ 351 (474)
.-++.+.+..|-+-|++++-. +. ....+.|.++.|...++++..|+..|.|..+|++.... ......-|
T Consensus 226 yhfs~G~sqqv~L~nvetg~~-------qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh 297 (425)
T KOG2695|consen 226 YHFSVGLSQQVLLTNVETGHQ-------QS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYH 297 (425)
T ss_pred eeecccccceeEEEEeecccc-------cc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEc
Confidence 346677788888888876532 22 23667789999999999999999999999999986521 11223356
Q ss_pred ceeeEEEE---ecCCEEEEEeCCCcEEEEECCCCce-EEEEeecCCccceEEEEEe--eCCccccccceEEEEEecCCCc
Q 047728 352 KLAILCLV---TAGNLVFSGSADMSICIWRRKENEH-ICLSMLTGHSGPVKCLAVE--KDDESLSREKRWILYSGSLDKS 425 (474)
Q Consensus 352 ~~~v~~~~---~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~l~~~--~~~~~~~~~~~~~l~s~s~Dg~ 425 (474)
...++++. +++++|++.+.+|+|.+||.+.-+. .-+....+|...-.-+-++ +... .++++++|..
T Consensus 298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg--------~I~s~GdDcy 369 (425)
T KOG2695|consen 298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG--------SIFSVGDDCY 369 (425)
T ss_pred CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc--------eEEEccCeeE
Confidence 66676654 4789999999999999999986551 1267788887654444443 3333 7888999999
Q ss_pred EEEEEccCCC
Q 047728 426 VKMWRVSEQA 435 (474)
Q Consensus 426 i~vw~~~~~~ 435 (474)
.|||.+..+.
T Consensus 370 tRiWsl~~gh 379 (425)
T KOG2695|consen 370 TRIWSLDSGH 379 (425)
T ss_pred EEEEecccCc
Confidence 9999999873
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=1.3e-07 Score=83.15 Aligned_cols=165 Identities=15% Similarity=0.184 Sum_probs=117.8
Q ss_pred EEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEE
Q 047728 236 YSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTA 314 (474)
Q Consensus 236 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 314 (474)
++.+.+..|-+-|++++... .+. ....|.++.|...+ +++.|...|.|..+|++...++... .....-|.+.|++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~--~a~rlyh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW--CAQRLYHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc--ceEEEEcCcchhh
Confidence 55566777899999887542 333 56778888888744 9999999999999999976443332 2344568889999
Q ss_pred EEEcC-CCCEEEEEcCCCcEEEeecCccccc--ceeeeecceee----EEEEecCCEEEEEeCCCcEEEEECCCCceEEE
Q 047728 315 LAISP-DAAIVYCGSSDGLVNFWERELNLSH--GGVLRGHKLAI----LCLVTAGNLVFSGSADMSICIWRRKENEHICL 387 (474)
Q Consensus 315 l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~~~~~v----~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~ 387 (474)
+..-. ++++|++.+.+|.|++||++.-+.. .....+|.... .-+.+....+++++.|...+||.++.++..+.
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 98877 8899999999999999999876552 23344554332 34556678899999999999999999985433
Q ss_pred EeecCC--ccceEEEEEee
Q 047728 388 SMLTGH--SGPVKCLAVEK 404 (474)
Q Consensus 388 ~~~~~h--~~~v~~l~~~~ 404 (474)
..+... ...+..++|..
T Consensus 384 ipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 384 IPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred cCCCCccccccccceehhc
Confidence 333221 22345555544
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.69 E-value=1.4e-05 Score=71.42 Aligned_cols=188 Identities=13% Similarity=0.082 Sum_probs=116.6
Q ss_pred cCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEE
Q 047728 157 SNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236 (474)
Q Consensus 157 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~ 236 (474)
.++.+++++.++.|..||..+++.......... .... . ...+..++
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-----------------------------~~~~---~--~~~~~~v~ 80 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-----------------------------ISGA---P--VVDGGRVY 80 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-----------------------------GGSG---E--EEETTEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-----------------------------ccce---e--eecccccc
Confidence 688899999999999999999987655543211 0001 1 22455677
Q ss_pred EEECCCcEEEEEcCCcceeeee-eecCc-----ceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc
Q 047728 237 SASWDKTFKVWRTSDYKCLESV-IAHDD-----AVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC 310 (474)
Q Consensus 237 s~s~dg~i~iwd~~~~~~~~~~-~~~~~-----~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 310 (474)
.++.++.|..+|..+|+.+... ..... ......+. ++.++++..++.|..+|++++........ .......
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~ 157 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPV--GEPRGSS 157 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEES--STT-SS-
T ss_pred cccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeec--CCCCCCc
Confidence 7778899999999999998884 33211 11222332 34788888899999999886543211111 0000001
Q ss_pred ------cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCce
Q 047728 311 ------AVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEH 384 (474)
Q Consensus 311 ------~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~ 384 (474)
.+..-.+..++ .++++..++.+..+|+.++.... .............++..|+.++.++.|..||+.+++.
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w--~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW--SKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE--EECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE--EecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 11222222244 77777778864444999887442 1121222222567888999888999999999999974
No 302
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.69 E-value=1.1e-05 Score=74.98 Aligned_cols=241 Identities=15% Similarity=0.162 Sum_probs=153.4
Q ss_pred cccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC
Q 047728 144 FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD 221 (474)
Q Consensus 144 ~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 221 (474)
+....-++..+.++ |.+|++....| |.+|.-......... -..
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~----------------------------------~~~ 72 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF----------------------------------RHP 72 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhheeee----------------------------------ecC
Confidence 33356678888888 67888877776 899987765532211 223
Q ss_pred CeeEEEecCCCCEEEEEECC---------------CcEEEEEcCCcceeeeeeecCcc--ee-EEEecCCCeEEEeeCCC
Q 047728 222 AISSLSMSEDQNLLYSASWD---------------KTFKVWRTSDYKCLESVIAHDDA--VN-SIVAGFDGLVFTGSADG 283 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~d---------------g~i~iwd~~~~~~~~~~~~~~~~--v~-~v~~~~~~~l~~~~~dg 283 (474)
.|..+.|+|.+++|.+=+.. ..+.+||+.++..+..+.....+ .+ -+.|+-+..+++--...
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~ 152 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS 152 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC
Confidence 57888999999999875533 35999999999999988776555 44 56777776333323456
Q ss_pred cEEEEEcccCCCceeeeeeeeeec-ccccEEEEEEcCCC--CEEEE-----EcCCCcEEEeecCccccccee-eeeccee
Q 047728 284 TVKVWRRELQGKGTKHFFSQTLLK-QECAVTALAISPDA--AIVYC-----GSSDGLVNFWERELNLSHGGV-LRGHKLA 354 (474)
Q Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~--~~l~~-----~~~dg~i~v~d~~~~~~~~~~-~~~~~~~ 354 (474)
.++|+++. .... ...... ....|....|+|.+ ..|+. ....+.+++|.+..+..+... +..-...
T Consensus 153 sl~i~e~t-~n~~-----~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 153 SLYIHEIT-DNIE-----EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV 226 (561)
T ss_pred eEEEEecC-Cccc-----cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence 78999862 2111 111111 13568888999953 34443 456778999988744333211 1112222
Q ss_pred eEEEEecCCEEEEEe-----------CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC
Q 047728 355 ILCLVTAGNLVFSGS-----------ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD 423 (474)
Q Consensus 355 v~~~~~~~~~l~sgs-----------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D 423 (474)
-+.+...|++|+.-- .+..++|+++.... +.....-.++|..++|.|.+... .+++|-.+
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~---i~V~~~~~~pVhdf~W~p~S~~F------~vi~g~~p 297 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS---IPVEKDLKDPVHDFTWEPLSSRF------AVISGYMP 297 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc---cceeccccccceeeeecccCCce------eEEecccc
Confidence 244445566554321 23567888887443 22333567899999999998732 56666788
Q ss_pred CcEEEEEccCC
Q 047728 424 KSVKMWRVSEQ 434 (474)
Q Consensus 424 g~i~vw~~~~~ 434 (474)
..+.+++++..
T Consensus 298 a~~s~~~lr~N 308 (561)
T COG5354 298 ASVSVFDLRGN 308 (561)
T ss_pred cceeecccccc
Confidence 89999998765
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.69 E-value=7.7e-05 Score=66.91 Aligned_cols=199 Identities=12% Similarity=0.085 Sum_probs=122.9
Q ss_pred CCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeee
Q 047728 120 GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIK 197 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 197 (474)
+.++++--..+.|..|+............. ...+++. ++.|+.+..++ +.++|..+++..........
T Consensus 12 g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~-------- 81 (246)
T PF08450_consen 12 GRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDG-------- 81 (246)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETT--------
T ss_pred CEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCC--------
Confidence 667777777888999986644333322222 5555554 67788887766 56668887754332221100
Q ss_pred eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC--------CcEEEEEcCCcceeeeeeecCcceeEEE
Q 047728 198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD--------KTFKVWRTSDYKCLESVIAHDDAVNSIV 269 (474)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~v~ 269 (474)
.......+++++.++|++.++.... |.|..++.. ++..... ..-...+.|+
T Consensus 82 -------------------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~ 140 (246)
T PF08450_consen 82 -------------------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIA 140 (246)
T ss_dssp -------------------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEE
T ss_pred -------------------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceE
Confidence 0023457899999999977766543 557777776 4543333 3355678999
Q ss_pred ecCCC-e-EEEeeCCCcEEEEEcccCCCcee-eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccce
Q 047728 270 AGFDG-L-VFTGSADGTVKVWRRELQGKGTK-HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG 346 (474)
Q Consensus 270 ~~~~~-~-l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 346 (474)
|+|++ . +++-+..+.|..+++........ ..............-.++++.+|++.++....+.|.++|.+ +.....
T Consensus 141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~ 219 (246)
T PF08450_consen 141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLRE 219 (246)
T ss_dssp EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEE
T ss_pred ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEE
Confidence 99999 4 45667788899998875443111 11112222223458889999999998888889999999988 544433
Q ss_pred eeee
Q 047728 347 VLRG 350 (474)
Q Consensus 347 ~~~~ 350 (474)
+..+
T Consensus 220 i~~p 223 (246)
T PF08450_consen 220 IELP 223 (246)
T ss_dssp EE-S
T ss_pred EcCC
Confidence 4333
No 304
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=4.9e-06 Score=80.98 Aligned_cols=236 Identities=14% Similarity=0.065 Sum_probs=158.2
Q ss_pred EEEEEecC-CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEec
Q 047728 151 VKAIVISN-EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMS 229 (474)
Q Consensus 151 V~~i~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 229 (474)
-.++.|+. ..|+-|+. ..|.+-|..+-+.+... ..|...|+.+.|.
T Consensus 18 ~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsi--------------------------------e~h~s~V~~VrWa 64 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSI--------------------------------ELHQSAVTSVRWA 64 (1062)
T ss_pred ccccccCccceEEEecC-ceEEEEehhhhhhhhcc--------------------------------ccCccceeEEEec
Confidence 55677774 45555554 46888887766544322 2377888888887
Q ss_pred CC------------CCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-----eEEEeeCCCcEEEEEccc
Q 047728 230 ED------------QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-----LVFTGSADGTVKVWRREL 292 (474)
Q Consensus 230 ~~------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-----~l~~~~~dg~i~iwd~~~ 292 (474)
|. .-+|+++.-.|.|.+||...+..+..+..|.+++..++|-+.. .|++-.....|.+|+..+
T Consensus 65 p~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt 144 (1062)
T KOG1912|consen 65 PAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT 144 (1062)
T ss_pred cCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence 62 1256777788999999999999999999999999999987643 677778888999999887
Q ss_pred CCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCccc------ccceeeeecce------------
Q 047728 293 QGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNL------SHGGVLRGHKL------------ 353 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~------~~~~~~~~~~~------------ 353 (474)
+++. -..........|+.++| +.+.+..-+..|.+.+-+.-... ...++...|..
T Consensus 145 G~k~------Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~n 218 (1062)
T KOG1912|consen 145 GEKF------WKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGN 218 (1062)
T ss_pred Ccee------eccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccc
Confidence 7652 22223344567789999 77777777778877776532111 11111111111
Q ss_pred ---------------eeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEE
Q 047728 354 ---------------AILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY 418 (474)
Q Consensus 354 ---------------~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~ 418 (474)
.-.+++|.-+-++-..--..+.++|++-.. ++....-..+.+.-+.+-|+.+.. .|+
T Consensus 219 s~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~--~l~vvpier~~akfv~vlP~~~rd------~Lf 290 (1062)
T KOG1912|consen 219 STTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC--CLAVVPIERGGAKFVDVLPDPRRD------ALF 290 (1062)
T ss_pred cccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc--eeEEEEeccCCcceeEeccCCCcc------eEE
Confidence 002334443333334446779999998776 455555555667778888887633 899
Q ss_pred EecCCCcEEEEEccC
Q 047728 419 SGSLDKSVKMWRVSE 433 (474)
Q Consensus 419 s~s~Dg~i~vw~~~~ 433 (474)
+.-.||.+.+|.-+.
T Consensus 291 clH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 291 CLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEecCCeEEEEEeec
Confidence 999999999997665
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1e-06 Score=80.27 Aligned_cols=247 Identities=13% Similarity=0.122 Sum_probs=167.5
Q ss_pred cCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728 146 SNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS 224 (474)
Q Consensus 146 ~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 224 (474)
.|.+.|+.+... .+++++++.||.++.|.-..-..... ...+..|...|.
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEf-----------------------------VKhFraHL~~I~ 57 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEF-----------------------------VKHFRAHLGVIL 57 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceee-----------------------------hhhhHHHHHHHH
Confidence 478888888777 78999999999999997543211100 012344888899
Q ss_pred EEEecCCCCEEEEEEC-CCcEEEEEcCCcceeeeeee--cCcceeEEEecCCC---eEEE-eeCCCcEEEEEcccCCCce
Q 047728 225 SLSMSEDQNLLYSASW-DKTFKVWRTSDYKCLESVIA--HDDAVNSIVAGFDG---LVFT-GSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 225 ~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~---~l~~-~~~dg~i~iwd~~~~~~~~ 297 (474)
+++.+.++-++.+.+. |..++++|+++...+..++. ..+.+..+. ++.. .+++ .-.++.+.++|-......
T Consensus 58 sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q- 135 (558)
T KOG0882|consen 58 SLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQ- 135 (558)
T ss_pred hhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCc-
Confidence 9999999999999887 99999999988766544433 223332222 2221 3333 345788999997644321
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccce---------------eee-ecceeeEEEEec
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG---------------VLR-GHKLAILCLVTA 361 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~---------------~~~-~~~~~v~~~~~~ 361 (474)
......-|..+|.++.+.+.+..+++....|.|..|..+...+... +.+ .......+++++
T Consensus 136 ---~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~ 212 (558)
T KOG0882|consen 136 ---DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD 212 (558)
T ss_pred ---cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc
Confidence 2344556889999999999999999999999999998773111000 001 112334788999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEE------------------------------EeecCCcc-ceEEEEEeeCCcccc
Q 047728 362 GNLVFSGSADMSICIWRRKENEHICL------------------------------SMLTGHSG-PVKCLAVEKDDESLS 410 (474)
Q Consensus 362 ~~~l~sgs~dg~i~iwd~~~~~~~~~------------------------------~~~~~h~~-~v~~l~~~~~~~~~~ 410 (474)
+..+.+-+.|..|++++..+++.... ..+..|.. .-+.+.|...++
T Consensus 213 g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~--- 289 (558)
T KOG0882|consen 213 GAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGN--- 289 (558)
T ss_pred cCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCC---
Confidence 99999999999999999988763210 00111222 335667777777
Q ss_pred ccceEEEEEecCCCcEEEEEccCCC
Q 047728 411 REKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 411 ~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
+|+-|+-=| |+|.++.++.
T Consensus 290 -----flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 290 -----FLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred -----EEEeeccee-EEEEEeecCe
Confidence 777776655 8888887763
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.63 E-value=3.8e-05 Score=68.93 Aligned_cols=192 Identities=11% Similarity=0.049 Sum_probs=120.0
Q ss_pred EEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEec-CCCeEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728 225 SLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAG-FDGLVFTGSADGTVKVWRRELQGKGTKHFFS 302 (474)
Q Consensus 225 ~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 302 (474)
+.+|.+ ++.++++--..+.|..|+..+++... +.... ...+++. +++.++.+...+. .++|+..+.. ....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~---~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKV---TVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTCE-EEEETTTTEE---EEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCce-EEEecCCCcE---EEEe
Confidence 678888 56666666678999999998765433 32222 6677777 6777777766554 5557764321 1111
Q ss_pred eee-ec-ccccEEEEEEcCCCCEEEEEcCC--------CcEEEeecCcccccceeeeecceeeEEEEecCCEEE-EEeCC
Q 047728 303 QTL-LK-QECAVTALAISPDAAIVYCGSSD--------GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVF-SGSAD 371 (474)
Q Consensus 303 ~~~-~~-~~~~v~~l~~~~~~~~l~~~~~d--------g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-sgs~d 371 (474)
... .. .....+.++++++|++.++.... |.|..++.. +........-+...-++++++++.|+ +-+..
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 111 12 45678899999999977765543 457777776 33222222233445689999998776 55677
Q ss_pred CcEEEEECCCCce--E---EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 372 MSICIWRRKENEH--I---CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 372 g~i~iwd~~~~~~--~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
+.|..|++..... . ....+....+..-.+++..++. +.++.-..+.|.+++..
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~--------l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN--------LWVADWGGGRIVVFDPD 213 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS---------EEEEEETTTEEEEEETT
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC--------EEEEEcCCCEEEEECCC
Confidence 8899999863321 1 1222333333578899999998 77776678889999876
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.60 E-value=1.2e-06 Score=86.71 Aligned_cols=181 Identities=16% Similarity=0.190 Sum_probs=134.2
Q ss_pred CCEEEEeeCCCcEEEEeCCcc--ccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeee
Q 047728 120 GDLLYTGSDSKNIRVWKNQRE--FSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIK 197 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~~~--~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 197 (474)
+..++.|+-...+..+|.... .+...-....|+-+..+++.+++|...|+|.+-|..+.+.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~i---------------- 210 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETI---------------- 210 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCcee----------------
Confidence 556666766666777775533 23333334458888999999999999999999998887654
Q ss_pred eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC---------CCcEEEEEcCCcceeeeeeecCcceeEE
Q 047728 198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW---------DKTFKVWRTSDYKCLESVIAHDDAVNSI 268 (474)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~v 268 (474)
..+..|++.|.++.. .|++|++++. |.-|+|||++..+.+.-+.-+.++ .-+
T Consensus 211 ----------------ht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~fl 271 (1118)
T KOG1275|consen 211 ----------------HTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFL 271 (1118)
T ss_pred ----------------eeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhh
Confidence 244559999998866 5789999874 556899999998887777666555 556
Q ss_pred EecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEee
Q 047728 269 VAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE 337 (474)
Q Consensus 269 ~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d 337 (474)
.|+|.- .+++++..|...+-|......... -..........+..++++++++.++.|..+|.|.+|-
T Consensus 272 rf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~--~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 272 RFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA--GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred hhcccccceEEEEecccceeeccccccCCCcc--ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 788875 899999999999998433222111 1223334455699999999999999999999999997
No 308
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.58 E-value=2.4e-07 Score=56.34 Aligned_cols=37 Identities=32% Similarity=0.720 Sum_probs=35.1
Q ss_pred EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728 386 CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 386 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
++..+.+|.++|++|+|+|++. +|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~--------~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGN--------FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSS--------EEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccc--------cceeeCCCCEEEEEC
Confidence 5788999999999999999988 999999999999997
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=2.2e-06 Score=83.79 Aligned_cols=188 Identities=15% Similarity=0.102 Sum_probs=127.4
Q ss_pred cCcEEEEEEcCCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeeccc
Q 047728 110 EGHIYSLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTL 189 (474)
Q Consensus 110 ~~~i~~~~~~~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 189 (474)
...+.|.++.+++|+-|+-+|.|++.+.+........|+.. ...|.++++|+.||+|.|-.+.+.+......
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d---- 110 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD---- 110 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCccccccccccc----ccCCceEEEecCCCcEEEeeccCCccceeEe----
Confidence 46688999999999999999999999966554555556554 4448999999999999999888776543222
Q ss_pred CccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-----CCEEEEEECCCcEEEEEcCC--cceeeeeeecC
Q 047728 190 PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-----QNLLYSASWDKTFKVWRTSD--YKCLESVIAHD 262 (474)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-----~~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~ 262 (474)
-..++.+++++|+ .+.+++|+..| +.++.-+- .+....+....
T Consensus 111 -----------------------------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 111 -----------------------------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred -----------------------------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence 4457899999997 57899999888 77765321 11111455567
Q ss_pred cceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728 263 DAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339 (474)
Q Consensus 263 ~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~ 339 (474)
++|.++.|..+ +++-+ .|--|++||+..................+.....+.|.++.+++ .| ...+|++..++
T Consensus 161 G~I~~i~W~g~-lIAWa-nd~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV-IG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 161 GPIHSIKWRGN-LIAWA-NDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV-IG-WGDSVKICSIK 233 (846)
T ss_pred cceEEEEecCc-EEEEe-cCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE-Ee-cCCeEEEEEEe
Confidence 89999999732 44444 55558999987655422222222222222334567777665544 34 44468888777
No 310
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.53 E-value=3e-05 Score=75.12 Aligned_cols=135 Identities=14% Similarity=0.188 Sum_probs=91.1
Q ss_pred cEEEEEEcCCEEEEeeCCCcEEEEeCC-ccccccc--cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeee
Q 047728 112 HIYSLAAAGDLLYTGSDSKNIRVWKNQ-REFSGFK--SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRV 186 (474)
Q Consensus 112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~-~~~~~~~--~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 186 (474)
.-+|++..+++++.|+.-|.|++|+.. ......+ +..+.+..+..+ ..+++.|+..|.|.++.+..........+
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence 357888889999999999999999843 2222222 233334444444 56788888999999998887543322221
Q ss_pred cccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc----ceeeeeeecC
Q 047728 187 GTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY----KCLESVIAHD 262 (474)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~ 262 (474)
... -..|...|++++|++++..+++|...|+|..-.+.+. ...+.+....
T Consensus 117 t~~--------------------------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 117 TPC--------------------------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred ccc--------------------------cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 110 0128899999999999999999999999999888762 1122233345
Q ss_pred cceeEEEecC
Q 047728 263 DAVNSIVAGF 272 (474)
Q Consensus 263 ~~v~~v~~~~ 272 (474)
..|..+....
T Consensus 171 s~IVQlD~~q 180 (726)
T KOG3621|consen 171 SEIVQLDYLQ 180 (726)
T ss_pred cceEEeeccc
Confidence 6676776653
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4.2e-06 Score=75.36 Aligned_cols=79 Identities=22% Similarity=0.207 Sum_probs=70.3
Q ss_pred eeeeccCCeeEEEecCCCC-EEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcc
Q 047728 215 LWIKHFDAISSLSMSEDQN-LLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRE 291 (474)
Q Consensus 215 ~~~~h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~ 291 (474)
.+.+|...|.+++|+|..+ ++..++.+.+|+|.|+++..++..+..+ ..+++++|..|. .+.+|...|.|.+||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 4556888999999999665 7889999999999999999999999887 889999999887 89999999999999998
Q ss_pred cCC
Q 047728 292 LQG 294 (474)
Q Consensus 292 ~~~ 294 (474)
...
T Consensus 267 ~~~ 269 (463)
T KOG1645|consen 267 QPE 269 (463)
T ss_pred CCC
Confidence 654
No 312
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.52 E-value=1.9e-05 Score=68.52 Aligned_cols=190 Identities=16% Similarity=0.152 Sum_probs=105.2
Q ss_pred EEEEEcCCEEEEeeCCCcEEEEeCC-ccccccc-------cCccCEEEEEec--------CCEEEEEeCCCeEEEEecCC
Q 047728 114 YSLAAAGDLLYTGSDSKNIRVWKNQ-REFSGFK-------SNSGLVKAIVIS--------NEKIFSGHQDGKIRVWKVSS 177 (474)
Q Consensus 114 ~~~~~~~~~l~tgs~dg~v~vwd~~-~~~~~~~-------~h~~~V~~i~~~--------~~~l~s~~~dg~i~vwd~~~ 177 (474)
.++++++.+||.+...|+|+++|+. ..+..+. .-..+|..+.|- ...|+.-..+|.++-|-+..
T Consensus 49 l~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~ 128 (282)
T PF15492_consen 49 LAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV 128 (282)
T ss_pred EEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc
Confidence 3456789999999999999999944 3222221 124566677664 12577777888888777643
Q ss_pred CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee
Q 047728 178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES 257 (474)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 257 (474)
+........... .....+...|.++.++|..++|++|+.... +++.
T Consensus 129 gt~q~y~e~hsf------------------------sf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~---- 174 (282)
T PF15492_consen 129 GTNQGYQENHSF------------------------SFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM---- 174 (282)
T ss_pred ccCCcceeeEEE------------------------EecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----
Confidence 321111110000 011125678999999999888888774322 0000
Q ss_pred eeecCcceeEEEecCCC---eEEEeeCCCcE------EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728 258 VIAHDDAVNSIVAGFDG---LVFTGSADGTV------KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS 328 (474)
Q Consensus 258 ~~~~~~~v~~v~~~~~~---~l~~~~~dg~i------~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 328 (474)
-++....+++-.+..+. ..++...|+.. .+|.+-.. .+..........|..|..+|||..|++..
T Consensus 175 s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~------~~fs~~~~~~d~i~kmSlSPdg~~La~ih 248 (282)
T PF15492_consen 175 SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF------KFFSRQGQEQDGIFKMSLSPDGSLLACIH 248 (282)
T ss_pred ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce------eeeeccccCCCceEEEEECCCCCEEEEEE
Confidence 00111112222221111 22222222211 12221100 01112233467799999999999999999
Q ss_pred CCCcEEEeecCcccc
Q 047728 329 SDGLVNFWERELNLS 343 (474)
Q Consensus 329 ~dg~i~v~d~~~~~~ 343 (474)
.+|.|.+|++..-..
T Consensus 249 ~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 249 FSGSLSLWEIPSLRL 263 (282)
T ss_pred cCCeEEEEecCcchh
Confidence 999999999875543
No 313
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.52 E-value=0.00028 Score=69.87 Aligned_cols=278 Identities=9% Similarity=0.090 Sum_probs=148.6
Q ss_pred cCCEEEEeeCCCcEEEEeCC--ccccccccCcc------CE--EEEEecC-CEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728 119 AGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSG------LV--KAIVISN-EKIFSGHQDGKIRVWKVSSKDASIHKRVG 187 (474)
Q Consensus 119 ~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~------~V--~~i~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 187 (474)
.+..++.++.++.|.-.|.. +.+-.+..... .+ ..+...+ +.++.++.+|.|.-+|.++++........
T Consensus 60 ~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 60 VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 36677778888888888843 33322221111 11 1223445 89999999999999999999877654432
Q ss_pred ccCccceeeeeecCCCCeEEEeeeccceeeeccCCee-EEEecCCCCEEEEEE---------CCCcEEEEEcCCcceeee
Q 047728 188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS-SLSMSEDQNLLYSAS---------WDKTFKVWRTSDYKCLES 257 (474)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~ 257 (474)
.... ....+. ...+ .+..++.++ .++.|..+|..+++.+..
T Consensus 140 ~~~~---------------------------~~~~i~ssP~v--~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 140 DQVP---------------------------PGYTMTGAPTI--VKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CCcC---------------------------cceEecCCCEE--ECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 1100 000000 0111 123444443 467899999999998877
Q ss_pred eeecCcc--------------------e-eEEEecCC-CeEEEeeCCC------------------cEEEEEcccCCCce
Q 047728 258 VIAHDDA--------------------V-NSIVAGFD-GLVFTGSADG------------------TVKVWRRELQGKGT 297 (474)
Q Consensus 258 ~~~~~~~--------------------v-~~v~~~~~-~~l~~~~~dg------------------~i~iwd~~~~~~~~ 297 (474)
+...... + ...++.+. +.++.++.++ .|.-+|..+++...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 6542110 1 12233333 4777777665 68888877665432
Q ss_pred eeeeeee----eeccccc-EEEEEEcCCCC---EEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEE-
Q 047728 298 KHFFSQT----LLKQECA-VTALAISPDAA---IVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG- 368 (474)
Q Consensus 298 ~~~~~~~----~~~~~~~-v~~l~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg- 368 (474)
....... ......+ +..+. .-++. .+++++.+|.+..+|.++++.+-...... .-....+ +.++.+
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~ 345 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGA 345 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEcc
Confidence 2111000 0000011 11111 01333 67888899999999999987664432221 1111222 333332
Q ss_pred -----------------eCCCcEEEEECCCCceEEEEeecCCc------cceEEEEEeeCCccccccceEEEEEecCCCc
Q 047728 369 -----------------SADMSICIWRRKENEHICLSMLTGHS------GPVKCLAVEKDDESLSREKRWILYSGSLDKS 425 (474)
Q Consensus 369 -----------------s~dg~i~iwd~~~~~~~~~~~~~~h~------~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~ 425 (474)
..+|.+.-.|..+++..-......+. .+...-...-.+. +|+.++.||.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~--------~v~~g~~dG~ 417 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGN--------LVFAGAADGY 417 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCC--------eEEEECCCCe
Confidence 23577888888888743222222111 1111101111233 7888889999
Q ss_pred EEEEEccCCCCCC
Q 047728 426 VKMWRVSEQAPPL 438 (474)
Q Consensus 426 i~vw~~~~~~~~~ 438 (474)
|+.+|..+++...
T Consensus 418 l~ald~~tG~~lW 430 (488)
T cd00216 418 FRAFDATTGKELW 430 (488)
T ss_pred EEEEECCCCceee
Confidence 9999999986543
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=1.3e-05 Score=79.07 Aligned_cols=202 Identities=16% Similarity=0.245 Sum_probs=133.4
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcc-eeEEEecCCC-eEEEeeCCCc-----EEEEEcccCC
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDA-VNSIVAGFDG-LVFTGSADGT-----VKVWRRELQG 294 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-v~~v~~~~~~-~l~~~~~dg~-----i~iwd~~~~~ 294 (474)
.|+| |++.+..++.|+.+|.|.+.+ +..+.+..++++... |..+....+. .|++.+.|+. |++|+++...
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4444 477889999999999999987 445666788887777 5555444443 7777776654 8999998654
Q ss_pred Cce-eeee-ee-----eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc---ccccceeeeecceeeEEE--EecC
Q 047728 295 KGT-KHFF-SQ-----TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL---NLSHGGVLRGHKLAILCL--VTAG 362 (474)
Q Consensus 295 ~~~-~~~~-~~-----~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~~v~~~--~~~~ 362 (474)
... .... .. .......++.+++++.+-+.+++|-.+|.|.++.-+- .............+|+.+ ..++
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 333 2211 01 1122467899999999999999999999999985321 111112223334455544 4466
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 363 NLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 363 ~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
..++-...-..|.+|.+.+.. +....+..|...+.|..+++... -+++++. ..|.+|+.....+
T Consensus 184 ~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~--------qfIca~~-e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 184 KSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTY--------QFICAGS-EFLYFYDSDGRGP 247 (933)
T ss_pred ceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCc--------cEEEecC-ceEEEEcCCCcce
Confidence 653333334579999998554 44666888889999999988765 3555543 4588888776543
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.50 E-value=1.1e-05 Score=80.08 Aligned_cols=183 Identities=10% Similarity=0.111 Sum_probs=132.9
Q ss_pred CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc
Q 047728 231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC 310 (474)
Q Consensus 231 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 310 (474)
++..++-|+....+..+|+++.+..+........|.-+..+ +..+++|...|+|.+-|.+.... ...+..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N-nr~lf~G~t~G~V~LrD~~s~~~------iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN-NRNLFCGDTRGTVFLRDPNSFET------IHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEec-CcEEEeecccceEEeecCCcCce------eeeeecccc
Confidence 45567778777888899999988777766555455555543 23899999999999999886553 677888888
Q ss_pred cEEEEEEcCCCCEEEEEcC---------CCcEEEeecCcccccceeeeecceeeEEEEec-CCEEEEEeCCCcEEEEECC
Q 047728 311 AVTALAISPDAAIVYCGSS---------DGLVNFWERELNLSHGGVLRGHKLAILCLVTA-GNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 311 ~v~~l~~~~~~~~l~~~~~---------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~ 380 (474)
.|..+.. .|+.|++++. |..|+|||++....+.-+........+.|.|. ...+++++..|...+-|..
T Consensus 219 siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 219 SISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred ceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecccc
Confidence 8876555 5788888765 55689999998765543333333344566664 6678888889999999943
Q ss_pred CC-ce-EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728 381 EN-EH-ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 381 ~~-~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
+. ++ ..+..+......+..+.+++++. .++.|..+|.|.+|.
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~--------alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGD--------ALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCc--------eEEEecccCcEeeec
Confidence 22 11 12333444455699999999999 999999999999998
No 316
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.49 E-value=4.3e-07 Score=55.17 Aligned_cols=35 Identities=37% Similarity=0.518 Sum_probs=32.8
Q ss_pred ceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEE
Q 047728 214 GLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWR 248 (474)
Q Consensus 214 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd 248 (474)
..+.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45678999999999999999999999999999997
No 317
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.48 E-value=0.00019 Score=68.23 Aligned_cols=192 Identities=13% Similarity=0.101 Sum_probs=104.8
Q ss_pred eeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee--------cCcceeEEEec-----CCC----eEE
Q 047728 215 LWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA--------HDDAVNSIVAG-----FDG----LVF 277 (474)
Q Consensus 215 ~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~v~~~-----~~~----~l~ 277 (474)
.+....++|++++.+. =.+++.|..+|.+.|.|++....+..-.. ....++++.|. .|+ .++
T Consensus 81 l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 81 LLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp EE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred heeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3444688999999974 45999999999999999988877765321 22356777665 333 789
Q ss_pred EeeCCCcEEEEEcccCCCc-eeeeeeeeeecccccEEEEE-EcCC--------------------CCEEEEEcCCCcEEE
Q 047728 278 TGSADGTVKVWRRELQGKG-TKHFFSQTLLKQECAVTALA-ISPD--------------------AAIVYCGSSDGLVNF 335 (474)
Q Consensus 278 ~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~l~-~~~~--------------------~~~l~~~~~dg~i~v 335 (474)
+|...|.+.+|.+...... ....+......+.+.|..+. ++.+ -+-+++...+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 9999999999988632222 22222222234556666554 3221 112444455678999
Q ss_pred eecCcccccceeeee-cceeeEEEE-----ecCCEEEEEeCCCcEEEEECCCCceEEEEeec--CCccceEEEEEeeCCc
Q 047728 336 WERELNLSHGGVLRG-HKLAILCLV-----TAGNLVFSGSADMSICIWRRKENEHICLSMLT--GHSGPVKCLAVEKDDE 407 (474)
Q Consensus 336 ~d~~~~~~~~~~~~~-~~~~v~~~~-----~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~ 407 (474)
+...+.+...+.+.. ......++. ..+..|++-..+|.|++|.+-..+.+....+. .....+....+.++|.
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence 988776555444422 112223332 24678888899999999999887754333332 1223455677788887
No 318
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.46 E-value=0.0002 Score=69.15 Aligned_cols=190 Identities=8% Similarity=-0.010 Sum_probs=108.9
Q ss_pred CEEEEEec--CCE-EEEEeCC---CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728 150 LVKAIVIS--NEK-IFSGHQD---GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI 223 (474)
Q Consensus 150 ~V~~i~~~--~~~-l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 223 (474)
.+..-.|+ ++. ++..+.+ ..|.++|+.+++..... ...+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---------------------------------~~~g~~ 235 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---------------------------------SSQGML 235 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---------------------------------cCCCcE
Confidence 66677777 453 5544333 45888888776543211 123345
Q ss_pred eEEEecCCCCEEEEE-ECC--CcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCc--EEEEEcccCCCc
Q 047728 224 SSLSMSEDQNLLYSA-SWD--KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGT--VKVWRRELQGKG 296 (474)
Q Consensus 224 ~~l~~~~~~~~l~s~-s~d--g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~--i~iwd~~~~~~~ 296 (474)
....|+|||+.|+.. +.+ ..|.++|+.+++. ..+..+........|+||| .+++....+. |.+.|+..+..
T Consensus 236 ~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~- 313 (419)
T PRK04043 236 VVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV- 313 (419)
T ss_pred EeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe-
Confidence 567899999877644 333 5688889877764 3444434333456799999 4444444554 55555553321
Q ss_pred eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC---------CcEEEeecCcccccceeeeecceeeEEEEecCCEEEE
Q 047728 297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD---------GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFS 367 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 367 (474)
. ..... .. ....|+|+|+.|+..... ..|.+.|+.++... .+..........++|||+.|+.
T Consensus 314 -~----rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f 384 (419)
T PRK04043 314 -E----QVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSIMF 384 (419)
T ss_pred -E----eCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEEEE
Confidence 0 11111 11 124899999988776553 26788888766432 2222222334778999997776
Q ss_pred EeCC-C--cEEEEECCCCc
Q 047728 368 GSAD-M--SICIWRRKENE 383 (474)
Q Consensus 368 gs~d-g--~i~iwd~~~~~ 383 (474)
...+ + .+.+.++....
T Consensus 385 ~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 385 IKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred EEccCCcEEEEEEecCCCe
Confidence 5533 2 35566666543
No 319
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.45 E-value=1.7e-07 Score=89.08 Aligned_cols=238 Identities=12% Similarity=0.109 Sum_probs=148.9
Q ss_pred ccCCeeEEEecCCC--CEEEEEECCCcEEEEEcCCcce--eeeeeecCcceeEEEecCCC--eEEEee----CCCcEEEE
Q 047728 219 HFDAISSLSMSEDQ--NLLYSASWDKTFKVWRTSDYKC--LESVIAHDDAVNSIVAGFDG--LVFTGS----ADGTVKVW 288 (474)
Q Consensus 219 h~~~V~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~~~~--~l~~~~----~dg~i~iw 288 (474)
....+.|+++.-+. -+++.|..+|.|-+-.++...- -.....+..+.++++|.+-. .|++|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 44567788776633 4778889999999988765432 23446678899999999874 666663 35679999
Q ss_pred EcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe-cCCEEEE
Q 047728 289 RRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT-AGNLVFS 367 (474)
Q Consensus 289 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s 367 (474)
|+...-........... +......+++|..+.+.+++|.....+.++|++........+......-..+.| .++++++
T Consensus 135 di~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred ecccccCCCcccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec
Confidence 99865221111111111 233455688999999999999999999999998543332333222223345566 6788877
Q ss_pred EeCCCcEEEEEC-CCCceEEEEeecCCc----cceEEEEEeeCCccccccceEEEEEecCC-CcEEEEEccCCCCCCC--
Q 047728 368 GSADMSICIWRR-KENEHICLSMLTGHS----GPVKCLAVEKDDESLSREKRWILYSGSLD-KSVKMWRVSEQAPPLV-- 439 (474)
Q Consensus 368 gs~dg~i~iwd~-~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~~~~~~~~l~s~s~D-g~i~vw~~~~~~~~~~-- 439 (474)
-. ||.|-+||. ++-+. ++..+.... ..+..++|+|.... .+++...| ++|+++++..-..+..
T Consensus 214 ~~-dg~iAiwD~~rnien-pl~~i~~~~N~~~~~l~~~aycPtrtg-------lla~l~RdS~tIrlydi~~v~t~~s~n 284 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIEN-PLQIILRNENKKPKQLFALAYCPTRTG-------LLAVLSRDSITIRLYDICVVGTEGSAN 284 (783)
T ss_pred cc-cCceeeccchhhhcc-HHHHHhhCCCCcccceeeEEeccCCcc-------hhhhhccCcceEEEecccccCCccccc
Confidence 76 999999994 33221 122222222 24899999998764 56666654 6899999875322111
Q ss_pred -----CCcccccccCCC--CCCCccccCCCCCcC
Q 047728 440 -----STTQQHPLEGHG--VAPNSLPYAPSFSSQ 466 (474)
Q Consensus 440 -----~~~~~~~~~~~~--~~v~~l~~~p~~s~D 466 (474)
......+++... ..|....||+++.-.
T Consensus 285 n~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~e 318 (783)
T KOG1008|consen 285 NSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTE 318 (783)
T ss_pred ccceeeecccccccccccccceeecCcCcCCccc
Confidence 111111233222 567888888876333
No 320
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.42 E-value=1.8e-07 Score=91.93 Aligned_cols=191 Identities=14% Similarity=0.166 Sum_probs=134.3
Q ss_pred ceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-e-EEEeeCCC-cEEEEEc
Q 047728 214 GLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-L-VFTGSADG-TVKVWRR 290 (474)
Q Consensus 214 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~-l~~~~~dg-~i~iwd~ 290 (474)
..+..|....+|++|+-+.++|+.|+..|.|+++++.+|........|..+|+-+.-+.+| . |.+.+... -..+|++
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 3456688899999999999999999999999999999999999999999999999999998 4 44444444 5779987
Q ss_pred ccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-----cceeeEEEEecCCEE
Q 047728 291 ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-----HKLAILCLVTAGNLV 365 (474)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~l 365 (474)
..... .... -..-.++.|+.....-+.|+......+||+++.......+.+ .......|+|+..++
T Consensus 1175 ~s~~~-----~~Hs----f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1175 SSTGG-----PRHS----FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred ccccC-----cccc----ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 64221 1111 123456777775555555666677999999998766554432 234556778887777
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 366 FSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 366 ~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+- || .+||++..+ .+..+...+..+ .-.|+|.+. -++..+ .|||+++-
T Consensus 1246 ln---dG--vLWDvR~~~--aIh~FD~ft~~~-~G~FHP~g~--------eVIINS-----EIwD~RTF 1293 (1516)
T KOG1832|consen 1246 LN---DG--VLWDVRIPE--AIHRFDQFTDYG-GGGFHPSGN--------EVIINS-----EIWDMRTF 1293 (1516)
T ss_pred ee---Cc--eeeeeccHH--HHhhhhhheecc-cccccCCCc--------eEEeec-----hhhhhHHH
Confidence 63 44 589998775 344444433222 234889887 555554 37888764
No 321
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.35 E-value=0.0016 Score=62.47 Aligned_cols=116 Identities=19% Similarity=0.198 Sum_probs=80.4
Q ss_pred CCeeEEEecC-CCCEEEEE----ECCCc----EEEEEcCCcce--eeee-eecCcceeEEEecCCC-eEEEeeCCCcEEE
Q 047728 221 DAISSLSMSE-DQNLLYSA----SWDKT----FKVWRTSDYKC--LESV-IAHDDAVNSIVAGFDG-LVFTGSADGTVKV 287 (474)
Q Consensus 221 ~~V~~l~~~~-~~~~l~s~----s~dg~----i~iwd~~~~~~--~~~~-~~~~~~v~~v~~~~~~-~l~~~~~dg~i~i 287 (474)
....++.|+- +...+.+. +.+|. -.+|++...+. +... -.....|.+++++|+. .++.|+.||.|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3446677766 44455543 23443 34566554332 1111 2357789999999998 9999999999999
Q ss_pred EEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc
Q 047728 288 WRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH 344 (474)
Q Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 344 (474)
||...+. .......-.++.++|+|+|.++++|+..|.+.+||+.-....
T Consensus 286 yD~~~~~--------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 286 YDTTRGV--------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred EEcCCCe--------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 9986442 222344556889999999999999999999999998655433
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.33 E-value=9.5e-05 Score=76.02 Aligned_cols=237 Identities=17% Similarity=0.157 Sum_probs=142.4
Q ss_pred ccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728 148 SGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS 225 (474)
Q Consensus 148 ~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 225 (474)
.+.|.++.|. .+.++.+..+|.|.+-|.++....... .-...|.+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg---------------------------------~vd~GI~a 114 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG---------------------------------NVDNGISA 114 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeee---------------------------------eccCceEE
Confidence 3678888886 668888889999999877766443211 15568999
Q ss_pred EEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeec-----CcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeee
Q 047728 226 LSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH-----DDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHF 300 (474)
Q Consensus 226 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 300 (474)
++|+||++.++..+..+++.+- ..+..++.....+ .+....+-|.....-+-|+. |.....+.....+
T Consensus 115 aswS~Dee~l~liT~~~tll~m-T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~-gr~~~~~~~~~ek----- 187 (1265)
T KOG1920|consen 115 ASWSPDEELLALITGRQTLLFM-TKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSE-GRQAARQKIEKEK----- 187 (1265)
T ss_pred EeecCCCcEEEEEeCCcEEEEE-eccccchhccccccccccccccceecccccceeeecch-hhhcccccccccc-----
Confidence 9999999999999887777654 3444443322211 12222333333222222211 1111111110000
Q ss_pred eeeeeecccccEEEEEEcCCCCEEEEE-----cCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEe---CCC
Q 047728 301 FSQTLLKQECAVTALAISPDAAIVYCG-----SSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS---ADM 372 (474)
Q Consensus 301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~-----~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs---~dg 372 (474)
.. ......+.=+.++|--||.++++. .....|++||.+................+++.|.|.++++-. .|+
T Consensus 188 ~~-~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 188 AL-EQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDS 266 (1265)
T ss_pred cc-cchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCC
Confidence 00 001122334568999999999883 223789999988332222233334456788888999988754 466
Q ss_pred cEEEEECCCCceE-EEEeecCCccceEEEEEeeCCccccccceEEEEE---ecCCCcEEEEEccC
Q 047728 373 SICIWRRKENEHI-CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS---GSLDKSVKMWRVSE 433 (474)
Q Consensus 373 ~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s---~s~Dg~i~vw~~~~ 433 (474)
.|.+|..+..++- ....+.....+|..++|+.++. +|+. ......|++|-+.+
T Consensus 267 ~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd--------iLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 267 DIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD--------ILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred cEEEEecCCccccccccCCcccccchheeeecCCCC--------ceeeeecccccceEEEEEecC
Confidence 8999987654321 1222333445599999999998 7777 55555699998765
No 323
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.27 E-value=1.7e-05 Score=76.69 Aligned_cols=163 Identities=15% Similarity=0.141 Sum_probs=108.2
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee-ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI-AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
+...|.--++...+++++.|+.-|.+++|+-..++....-. +..+.+..+..+++. ++++|+..|.|.++-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44445555667788999999999999999976655433222 234445556677776 7888999999999988765443
Q ss_pred eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc---cccceeeeecceeeEEEEecCCEEEEEeCCCc
Q 047728 297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN---LSHGGVLRGHKLAILCLVTAGNLVFSGSADMS 373 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~ 373 (474)
...........|...|++++|++++..+++|...|.|.+-.++.. ....+.+..-...|+.+..-..+|+.++--..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~ 191 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRC 191 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhh
Confidence 333333344457899999999999999999999999998877762 11112233344566777665555554443332
Q ss_pred EEEEECCCC
Q 047728 374 ICIWRRKEN 382 (474)
Q Consensus 374 i~iwd~~~~ 382 (474)
.+++++.+
T Consensus 192 -~Lc~tE~e 199 (726)
T KOG3621|consen 192 -ILCQTEAE 199 (726)
T ss_pred -heeecchh
Confidence 34444433
No 324
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.25 E-value=0.0017 Score=55.73 Aligned_cols=137 Identities=17% Similarity=0.166 Sum_probs=85.2
Q ss_pred CEEEEeeCCCcEEEEeCCccccccc-cCccCEEEEEe-cCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeee
Q 047728 121 DLLYTGSDSKNIRVWKNQREFSGFK-SNSGLVKAIVI-SNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKC 198 (474)
Q Consensus 121 ~~l~tgs~dg~v~vwd~~~~~~~~~-~h~~~V~~i~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 198 (474)
.+++.|+..+.+.--|.+..-..++ .-...|.+-+. -++.++.|+..|.+.+.++.++..........
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~---------- 93 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE---------- 93 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehh----------
Confidence 4555566565555544332111111 11223333333 38899999999999999999997655443221
Q ss_pred ecCCCCeEEEeeeccceeeeccCCeeE-EEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecC-CCeE
Q 047728 199 SMKPSNYIEVRRHRNGLWIKHFDAISS-LSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF-DGLV 276 (474)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~~l 276 (474)
.|.+ ....+++..++.|+.|++.+..|.++..++...+.......+-++.+ ++.|
T Consensus 94 -----------------------~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sl 150 (354)
T KOG4649|consen 94 -----------------------TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSL 150 (354)
T ss_pred -----------------------hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceE
Confidence 1221 23366899999999999999999999999888765444333444555 4466
Q ss_pred EEeeCCCcEEEEEc
Q 047728 277 FTGSADGTVKVWRR 290 (474)
Q Consensus 277 ~~~~~dg~i~iwd~ 290 (474)
+.+...|.|.--..
T Consensus 151 y~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 151 YAAITAGAVLAVTK 164 (354)
T ss_pred EEEeccceEEEEcc
Confidence 66666666554443
No 325
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.22 E-value=0.00041 Score=65.97 Aligned_cols=209 Identities=13% Similarity=0.117 Sum_probs=113.9
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEEcCCcc-------------------------------------------eeeee
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYK-------------------------------------------CLESV 258 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-------------------------------------------~~~~~ 258 (474)
.|+.+.|.++...|++|...|.|.||.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998899999999999998652110 01122
Q ss_pred eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeee--eeecccccEEEEEEcC-----CC---CEEEEEc
Q 047728 259 IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQ--TLLKQECAVTALAISP-----DA---AIVYCGS 328 (474)
Q Consensus 259 ~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~l~~~~-----~~---~~l~~~~ 328 (474)
....++|++++.+.-|++++|..+|.+.|.|+|............ ........++++.|.- |+ -.+++|+
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 334689999999988899999999999999997443211111111 1112445688888873 33 4788999
Q ss_pred CCCcEEEeecCc--ccccc----eeeeecceeeEEEEe---c-----------------C---CEEEEEeCCCcEEEEEC
Q 047728 329 SDGLVNFWEREL--NLSHG----GVLRGHKLAILCLVT---A-----------------G---NLVFSGSADMSICIWRR 379 (474)
Q Consensus 329 ~dg~i~v~d~~~--~~~~~----~~~~~~~~~v~~~~~---~-----------------~---~~l~sgs~dg~i~iwd~ 379 (474)
..|.+.+|.+.- +.... .....+...+..+.+ + + .-++....+..++++..
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~ 242 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP 242 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence 999999998742 11110 111133344443332 1 0 12444445778999998
Q ss_pred CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
.+.+.. ...+ ...-....+.+.+-.. ......|++-..+|.|+++.+..-+
T Consensus 243 ~~~k~~-~K~~-~~~~~~~~~~vv~~~~---~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 243 PKSKGA-HKSF-DDPFLCSSASVVPTIS---RNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp T---EE-EEE--SS-EEEEEEEEEEEE----EEEEEEEEEEETTSEEEEEETTT--
T ss_pred CCCccc-ceee-ccccccceEEEEeecc---cCCceEEEEEECCCcEEEEECCCch
Confidence 876643 2233 2222334445532000 0111278888999999999998753
No 326
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.21 E-value=0.001 Score=65.90 Aligned_cols=241 Identities=16% Similarity=0.127 Sum_probs=130.2
Q ss_pred CEEEEeeCCCcEEEEeCC--ccccccccCcc-----CE-EEEEecCCEEEEEe---------CCCeEEEEecCCCCccee
Q 047728 121 DLLYTGSDSKNIRVWKNQ--REFSGFKSNSG-----LV-KAIVISNEKIFSGH---------QDGKIRVWKVSSKDASIH 183 (474)
Q Consensus 121 ~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~-----~V-~~i~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~ 183 (474)
+.++.++.+|.|+.+|.. +.+-.+..... .+ ....+.++.++.++ .+|.|...|..+++....
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 778888888888888843 43333322211 01 12233356666654 367888999999887765
Q ss_pred eeecccCccceeeeeecCCCCeEEEeeeccceeeecc-CCe-eEEEecCCCCEEEEEECCC------------------c
Q 047728 184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF-DAI-SSLSMSEDQNLLYSASWDK------------------T 243 (474)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V-~~l~~~~~~~~l~s~s~dg------------------~ 243 (474)
......... ....... ......+. ..| ...++.+.+.+++.++.++ .
T Consensus 191 ~~~~~~~~~------------~~~~~~~-~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~ 257 (488)
T cd00216 191 FYTTEPDPN------------AFPTWGP-DRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDS 257 (488)
T ss_pred eeccCCCcC------------CCCCCCC-CcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceee
Confidence 544211000 0000000 00000011 111 1244555566777777665 7
Q ss_pred EEEEEcCCcceeeeeeecCccee--------EEE-ec-CCC----eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccc
Q 047728 244 FKVWRTSDYKCLESVIAHDDAVN--------SIV-AG-FDG----LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQE 309 (474)
Q Consensus 244 i~iwd~~~~~~~~~~~~~~~~v~--------~v~-~~-~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 309 (474)
|.-+|.++++.+..+..-..... .+. .. -++ .+++++.+|.+...|.++++........
T Consensus 258 l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------- 330 (488)
T cd00216 258 IVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------- 330 (488)
T ss_pred EEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------
Confidence 99999999999887643111110 111 00 122 5788889999999999876543221111
Q ss_pred ccEEEEEEcCCCCEEEEE------------------cCCCcEEEeecCcccccceeeee---------cceeeEEEEecC
Q 047728 310 CAVTALAISPDAAIVYCG------------------SSDGLVNFWERELNLSHGGVLRG---------HKLAILCLVTAG 362 (474)
Q Consensus 310 ~~v~~l~~~~~~~~l~~~------------------~~dg~i~v~d~~~~~~~~~~~~~---------~~~~v~~~~~~~ 362 (474)
...++.+| ..++.+ ..+|.+.-+|+.+++.+-....+ .......+...+
T Consensus 331 --~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g 406 (488)
T cd00216 331 --EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAG 406 (488)
T ss_pred --ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecC
Confidence 01122233 222222 23567777888777654433322 000111233467
Q ss_pred CEEEEEeCCCcEEEEECCCCceE
Q 047728 363 NLVFSGSADMSICIWRRKENEHI 385 (474)
Q Consensus 363 ~~l~sgs~dg~i~iwd~~~~~~~ 385 (474)
.+|+.++.||.|+.+|.++++..
T Consensus 407 ~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 407 NLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred CeEEEECCCCeEEEEECCCCcee
Confidence 89999999999999999999854
No 327
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.17 E-value=0.0025 Score=54.73 Aligned_cols=138 Identities=14% Similarity=0.173 Sum_probs=85.3
Q ss_pred CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728 158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS 237 (474)
Q Consensus 158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 237 (474)
..+++.|+..+.+.--|..+++.......+ ..|.+-+.- -|++++.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg---------------------------------~RiE~sa~v-vgdfVV~ 68 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG---------------------------------VRIECSAIV-VGDFVVL 68 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC---------------------------------ceeeeeeEE-ECCEEEE
Confidence 567888888888888888887765433221 122222222 4678999
Q ss_pred EECCCcEEEEEcCCcceeeeeeecCc-ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728 238 ASWDKTFKVWRTSDYKCLESVIAHDD-AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL 315 (474)
Q Consensus 238 ~s~dg~i~iwd~~~~~~~~~~~~~~~-~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 315 (474)
|+..|.+++.+.++|+....+...+. .+.. ...+++ .+..|+.|++.+..|.+.... .-..+-......+-
T Consensus 69 GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a-~~d~~~glIycgshd~~~yalD~~~~~c------VykskcgG~~f~sP 141 (354)
T KOG4649|consen 69 GCYSGGLYFLCVKTGSQIWNFVILETVKVRA-QCDFDGGLIYCGSHDGNFYALDPKTYGC------VYKSKCGGGTFVSP 141 (354)
T ss_pred EEccCcEEEEEecchhheeeeeehhhhccce-EEcCCCceEEEecCCCcEEEecccccce------EEecccCCceeccc
Confidence 99999999999999988877765332 2222 334555 999999999999999886543 12222222223334
Q ss_pred EEcCCCCEEEEEcCCCcEEEe
Q 047728 316 AISPDAAIVYCGSSDGLVNFW 336 (474)
Q Consensus 316 ~~~~~~~~l~~~~~dg~i~v~ 336 (474)
++.|-...|+++...|.+.--
T Consensus 142 ~i~~g~~sly~a~t~G~vlav 162 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITAGAVLAV 162 (354)
T ss_pred eecCCCceEEEEeccceEEEE
Confidence 455533344444455554433
No 328
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.15 E-value=2.2e-06 Score=81.73 Aligned_cols=194 Identities=19% Similarity=0.202 Sum_probs=121.0
Q ss_pred cCEEEEEec----CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728 149 GLVKAIVIS----NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS 224 (474)
Q Consensus 149 ~~V~~i~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 224 (474)
..+.|+++. ...++.|..+|.|.+-.+....-... .+..+|...++
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~------------------------------E~tp~~ar~Ct 106 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSA------------------------------EVTPGYARPCT 106 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccc------------------------------eeccccccccc
Confidence 345666654 23577888889888877765432210 12234888999
Q ss_pred EEEecC-CCCEEEEEE----CCCcEEEEEcCCc--ceeee--eee-cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccC
Q 047728 225 SLSMSE-DQNLLYSAS----WDKTFKVWRTSDY--KCLES--VIA-HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQ 293 (474)
Q Consensus 225 ~l~~~~-~~~~l~s~s----~dg~i~iwd~~~~--~~~~~--~~~-~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~ 293 (474)
+++|++ |.+.||+|- .|..+.|||+.++ .+... +.+ -......++|..+. .+++|.....++++|++..
T Consensus 107 ~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs 186 (783)
T KOG1008|consen 107 SLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS 186 (783)
T ss_pred ccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh
Confidence 999999 667777763 4577999999876 22222 222 33455688888777 7888888899999999843
Q ss_pred CCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeec-Ccccccceeeeec------ceeeEEEEec-CCE
Q 047728 294 GKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWER-ELNLSHGGVLRGH------KLAILCLVTA-GNL 364 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~------~~~v~~~~~~-~~~ 364 (474)
.. ....-....+..+.++| .+++++.- .||.|.+||. ++-+.+...+... ....+++.|- ...
T Consensus 187 ~~-------~~~svnTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgl 258 (783)
T KOG1008|consen 187 LD-------SVSSVNTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGL 258 (783)
T ss_pred hh-------hhhhhhhhhcccceecCCCCCceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence 21 11122233577788889 77777654 5999999993 3322222111111 1223444442 345
Q ss_pred EEEEeC-CCcEEEEECC
Q 047728 365 VFSGSA-DMSICIWRRK 380 (474)
Q Consensus 365 l~sgs~-dg~i~iwd~~ 380 (474)
+++... .++|+++|+.
T Consensus 259 la~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 259 LAVLSRDSITIRLYDIC 275 (783)
T ss_pred hhhhccCcceEEEeccc
Confidence 555554 5799999985
No 329
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=2.8e-06 Score=83.86 Aligned_cols=197 Identities=16% Similarity=0.178 Sum_probs=133.2
Q ss_pred ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728 139 REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW 216 (474)
Q Consensus 139 ~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (474)
+....|..|...-+|++|+ .+.|+.|+..|.|+++++.++.... ..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~--------------------------------s~ 1139 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE--------------------------------SV 1139 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc--------------------------------cc
Confidence 4556778899999999999 5689999999999999999986542 23
Q ss_pred eeccCCeeEEEecCCCCEEEEEECCC--cEEEEEcCC-cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEccc
Q 047728 217 IKHFDAISSLSMSEDQNLLYSASWDK--TFKVWRTSD-YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRREL 292 (474)
Q Consensus 217 ~~h~~~V~~l~~~~~~~~l~s~s~dg--~i~iwd~~~-~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~ 292 (474)
..|..+|+-+.-+.+|..+++.+.-. -..+|++.+ +...+++. .-.++.|+... .-+.|+.-....+||+.+
T Consensus 1140 ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT 1215 (1516)
T KOG1832|consen 1140 NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQT 1215 (1516)
T ss_pred cccccccccccccCCcceeeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEeccc
Confidence 45999999998888998877655333 467899864 34444443 23567787665 445566667789999987
Q ss_pred CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCC
Q 047728 293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADM 372 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg 372 (474)
....... ..........-.+..|+|+..+++ .|| .+||.+....+..+-+-.....-.|.|+|..++.-+
T Consensus 1216 ~~~l~ty--lt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS--- 1285 (1516)
T KOG1832|consen 1216 CSPLQTY--LTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS--- 1285 (1516)
T ss_pred CcHHHHh--cCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec---
Confidence 6542211 111122223337788999888776 455 479998775543332221112234678888888765
Q ss_pred cEEEEECCCCc
Q 047728 373 SICIWRRKENE 383 (474)
Q Consensus 373 ~i~iwd~~~~~ 383 (474)
.|||+++.+
T Consensus 1286 --EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1286 --EIWDMRTFK 1294 (1516)
T ss_pred --hhhhhHHHH
Confidence 489998866
No 330
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.14 E-value=0.0062 Score=55.48 Aligned_cols=199 Identities=15% Similarity=0.170 Sum_probs=118.8
Q ss_pred eEEEecCCCCEEEEEE--CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeee
Q 047728 224 SSLSMSEDQNLLYSAS--WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFF 301 (474)
Q Consensus 224 ~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 301 (474)
..++++.++++++... -...|.|.|+..++.+..+.... +..+--..+..+.+-+.||.+.-..+...++... ..
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~-~~ 174 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ-KS 174 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEE-EE
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecCCCceEEEecCCceEEEEECCCCCEeE-ee
Confidence 3457788999888764 45679999999999888775422 1222222223688889999999999986665442 22
Q ss_pred eeeeecccccE-EEEEEcCCCCEEEEEcCCCcEEEeecCcccccc-------------eeeeecceeeEEEEecCCEEEE
Q 047728 302 SQTLLKQECAV-TALAISPDAAIVYCGSSDGLVNFWERELNLSHG-------------GVLRGHKLAILCLVTAGNLVFS 367 (474)
Q Consensus 302 ~~~~~~~~~~v-~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~l~s 367 (474)
...+.....++ ..-++...+..++-.+.+|.|+-.|+....... .-.+......++++...+.|++
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 22233333333 233455556666667888998888876543111 0112222345667665555554
Q ss_pred Ee--------CCC--cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEE-ecCCCcEEEEEccCCC
Q 047728 368 GS--------ADM--SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS-GSLDKSVKMWRVSEQA 435 (474)
Q Consensus 368 gs--------~dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s-~s~Dg~i~vw~~~~~~ 435 (474)
-- .|+ .|.++|+.+++. +..+.. ..++.+|+++.+.+. +|++ ...++.|.+||..+++
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~kr--v~Ri~l-~~~~~Si~Vsqd~~P-------~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKR--VARIPL-EHPIDSIAVSQDDKP-------LLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEE--EEEEEE-EEEESEEEEESSSS--------EEEEEETTTTEEEEEETTT--
T ss_pred EecCCCCCCccCCceEEEEEECCCCeE--EEEEeC-CCccceEEEccCCCc-------EEEEEcCCCCeEEEEeCcCCc
Confidence 32 122 366677777774 444442 246889999998775 5654 4568999999999983
No 331
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.12 E-value=0.0063 Score=54.75 Aligned_cols=225 Identities=15% Similarity=0.169 Sum_probs=131.7
Q ss_pred EEEEEeCCCe-EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE
Q 047728 160 KIFSGHQDGK-IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA 238 (474)
Q Consensus 160 ~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 238 (474)
.++.+-.-|+ ..+||..+++...... ..+...|.+| -+|++||++|++.
T Consensus 19 avafaRRPG~~~~v~D~~~g~~~~~~~------------------------a~~gRHFyGH------g~fs~dG~~LytT 68 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTGQLLQRLW------------------------APPGRHFYGH------GVFSPDGRLLYTT 68 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCCceeeEEc------------------------CCCCCEEecC------EEEcCCCCEEEEe
Confidence 4555555554 5677877776543221 1222455666 3789999999986
Q ss_pred E-----CCCcEEEEEcC-CcceeeeeeecCcceeEEEecCCC-eEEEeeC-------CCc-----------EEEEEcccC
Q 047728 239 S-----WDKTFKVWRTS-DYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA-------DGT-----------VKVWRRELQ 293 (474)
Q Consensus 239 s-----~dg~i~iwd~~-~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~-------dg~-----------i~iwd~~~~ 293 (474)
- ..|.|-|||.. +.+.+..+..|.-....+.+.||+ .|+++.- .|. +.+.|..++
T Consensus 69 End~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 69 ENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred ccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 4 34889999998 778888888888778889999999 5555421 122 233333322
Q ss_pred CCceeeeeeeee--ecccccEEEEEEcCCCCEEEEEcCCCc-------EEEeecCccccccee----ee--ecceeeEEE
Q 047728 294 GKGTKHFFSQTL--LKQECAVTALAISPDAAIVYCGSSDGL-------VNFWERELNLSHGGV----LR--GHKLAILCL 358 (474)
Q Consensus 294 ~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~~~~dg~-------i~v~d~~~~~~~~~~----~~--~~~~~v~~~ 358 (474)
.. .....+ ..|...|..+++.++|..++..-..|. |.+++.......... .. .+-...+++
T Consensus 149 ~l----l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~ 224 (305)
T PF07433_consen 149 AL----LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAA 224 (305)
T ss_pred ce----eeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEE
Confidence 21 111122 346678999999999887776544432 334443322111111 01 122334666
Q ss_pred EecCCEEEEEe-CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 359 VTAGNLVFSGS-ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 359 ~~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+.++.++++.+ ..+.+.+||..+++......+ ..+..++-.+++ +++|.+. |. ++.+...
T Consensus 225 ~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l----~D~cGva~~~~~---------f~~ssG~-G~--~~~~~~~ 285 (305)
T PF07433_consen 225 DRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL----PDACGVAPTDDG---------FLVSSGQ-GQ--LIRLSPD 285 (305)
T ss_pred eCCCCEEEEECCCCCEEEEEECCCCCEeecccc----CceeeeeecCCc---------eEEeCCC-cc--EEEccCc
Confidence 66777776555 678999999999984322222 235556555554 4666554 33 4444443
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.10 E-value=0.0013 Score=64.61 Aligned_cols=212 Identities=10% Similarity=0.100 Sum_probs=129.4
Q ss_pred EecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCC----cEEEEEcccCCCceeee
Q 047728 227 SMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADG----TVKVWRRELQGKGTKHF 300 (474)
Q Consensus 227 ~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg----~i~iwd~~~~~~~~~~~ 300 (474)
-+.|||+.+... -..+.+.+.|.++.+...++.... ....+.+++++ ++++.+.+. ++..-+... .
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e--~----- 270 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE--R----- 270 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeecccc--C-----
Confidence 345677665433 345778888998888777776533 44677888988 665554321 222222211 0
Q ss_pred eeeeeecccccEEEE--------EEcCCCCEEEEEcCCCcEEEeecCc-----ccccceeeeecceeeEEEEecCCEEEE
Q 047728 301 FSQTLLKQECAVTAL--------AISPDAAIVYCGSSDGLVNFWEREL-----NLSHGGVLRGHKLAILCLVTAGNLVFS 367 (474)
Q Consensus 301 ~~~~~~~~~~~v~~l--------~~~~~~~~l~~~~~dg~i~v~d~~~-----~~~~~~~~~~~~~~v~~~~~~~~~l~s 367 (474)
. ..+ ++.++|++... .++.|.+.|..+ ......+..+....-+.++|||+++++
T Consensus 271 ---------d--~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyV 337 (635)
T PRK02888 271 ---------D--WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIA 337 (635)
T ss_pred ---------c--eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEE
Confidence 0 122 23447777665 367899999987 333444455556666889999998877
Q ss_pred Ee-CCCcEEEEECCCCce----------EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC--
Q 047728 368 GS-ADMSICIWRRKENEH----------ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ-- 434 (474)
Q Consensus 368 gs-~dg~i~iwd~~~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~-- 434 (474)
++ .+.+|.|.|+.+.+. .......--. .-...+|.+++. ...|--.|..|..|++...
T Consensus 338 anklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~--------aytslf~dsqv~kwn~~~a~~ 408 (635)
T PRK02888 338 NGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGN--------AYTTLFLDSQIVKWNIEAAIR 408 (635)
T ss_pred eCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC-CcceEEECCCCC--------EEEeEeecceeEEEehHHHHH
Confidence 66 589999999987542 1122222222 234567888887 7888889999999999862
Q ss_pred ----CC--CCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728 435 ----AP--PLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 435 ----~~--~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
+. +.......+...+|.....+ -+-.+||++|++
T Consensus 409 ~~~g~~~~~v~~k~dV~y~pgh~~~~~g----~t~~~dgk~l~~ 448 (635)
T PRK02888 409 AYKGEKVDPIVQKLDVHYQPGHNHASMG----ETKEADGKWLVS 448 (635)
T ss_pred HhccccCCcceecccCCCccceeeecCC----CcCCCCCCEEEE
Confidence 11 11122233333444332222 256889999876
No 333
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.09 E-value=0.0014 Score=61.31 Aligned_cols=180 Identities=14% Similarity=0.155 Sum_probs=112.7
Q ss_pred CcEEEEEcCCcceeeeeeecC-cceeEE---EecC-----CCeEEEeeC----------CCcEEEEEcccCCCceeeeee
Q 047728 242 KTFKVWRTSDYKCLESVIAHD-DAVNSI---VAGF-----DGLVFTGSA----------DGTVKVWRRELQGKGTKHFFS 302 (474)
Q Consensus 242 g~i~iwd~~~~~~~~~~~~~~-~~v~~v---~~~~-----~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~ 302 (474)
..|++.|..+.+.+..+.-.. ..+.++ .+.. ..++++|+. .|.|.++++............
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 358888888888776665432 334444 3332 226776654 288999999864111112222
Q ss_pred eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc-ccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCC
Q 047728 303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL-SHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKE 381 (474)
Q Consensus 303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~ 381 (474)
.......++|++++-- ++. |+++ ..+.|.+|++.... ............+.++...+++++.|.....+.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 2334457889998877 444 4433 34789999998776 333333334457888888899999999999999885543
Q ss_pred --CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 382 --NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 382 --~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
.+...+ .-......++++.|-+++. .++.+..+|.|.++....
T Consensus 159 ~~~~l~~v-a~d~~~~~v~~~~~l~d~~--------~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 159 ENNKLILV-ARDYQPRWVTAAEFLVDED--------TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp TTE-EEEE-EEESS-BEEEEEEEE-SSS--------EEEEEETTSEEEEEEE-S
T ss_pred cCCEEEEE-EecCCCccEEEEEEecCCc--------EEEEEcCCCeEEEEEECC
Confidence 222222 2233455689999987776 799999999999999874
No 334
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.07 E-value=7.4e-05 Score=71.37 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=62.7
Q ss_pred eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccC
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQ 293 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~ 293 (474)
.....|.|++++|+...|+.|+.||.|.+||...+.. .+....-.++.++|+|+| .+++|+..|.+.+||+...
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 4778899999999999999999999999999876533 333445678899999999 8999999999999998644
No 335
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.06 E-value=0.00019 Score=73.03 Aligned_cols=137 Identities=16% Similarity=0.182 Sum_probs=93.3
Q ss_pred ECCCcEEEEEcCCcceeeeeeecCcc-eeEEEecCC------CeEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc
Q 047728 239 SWDKTFKVWRTSDYKCLESVIAHDDA-VNSIVAGFD------GLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA 311 (474)
Q Consensus 239 s~dg~i~iwd~~~~~~~~~~~~~~~~-v~~v~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 311 (474)
.....|+-.|++.|+.+..+..+... |..++-... ...+.|-.+..|..||.|..+... .............
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~-v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL-VDSQSKQYSSKNN 579 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce-eeccccccccCCC
Confidence 35678999999999999999987754 666543221 167889999999999999754211 1111112234556
Q ss_pred EEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEEC
Q 047728 312 VTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRR 379 (474)
Q Consensus 312 v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~ 379 (474)
..|++-..+| +||+|+.+|.|++||.- +..-...+.+-..+| ++++.||++|++.+ +..|.|++.
T Consensus 580 Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 580 FSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 7788777666 67779999999999953 333334444444555 56677999988766 556777765
No 336
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.99 E-value=0.0027 Score=65.89 Aligned_cols=225 Identities=13% Similarity=0.092 Sum_probs=125.9
Q ss_pred CcEEEEEEc--CCEEEEeeCCCcEEEEeCCcccccc-ccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728 111 GHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGF-KSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKR 185 (474)
Q Consensus 111 ~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~-~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 185 (474)
+.|.++.|- ++-++.+..+|.|.+-|........ ..-...|.+++|+ ++.++..+.++++.+-+-+-. ......
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~-~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFE-PIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecccc-chhccc
Confidence 568888875 6678888888999888865443333 3346789999998 567777777777766432111 000000
Q ss_pred e-cccCccceeeeeecCCCCeEEEeeecc----------cee---eeccCCeeEEEecCCCCEEEEE-----ECCCcEEE
Q 047728 186 V-GTLPTFKDFIKCSMKPSNYIEVRRHRN----------GLW---IKHFDAISSLSMSEDQNLLYSA-----SWDKTFKV 246 (474)
Q Consensus 186 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~---~~h~~~V~~l~~~~~~~~l~s~-----s~dg~i~i 246 (474)
. ........++...... ...++++... ... ..-.+.=+.|+|--||+++++. .....|++
T Consensus 148 L~~d~~~~sk~v~VGwGr-keTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGR-KETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred cccccccccccceecccc-cceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0 0000000001100000 0000110000 000 0011223468999999999883 23378999
Q ss_pred EEcCCcceeeeeeecCcceeEEEecCCC-eEEEe---eCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC
Q 047728 247 WRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTG---SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA 322 (474)
Q Consensus 247 wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 322 (474)
||-+ |..-..-....+.-.+++|-|.| .+++- ..|+.|.+|..+....+. +..........+..++|+.++.
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~---f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGE---FVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccc---cccCCcccccchheeeecCCCC
Confidence 9976 44333222333445678999998 55543 346679999765322211 2222333444599999999999
Q ss_pred EEEE---EcCCCcEEEeecCcc
Q 047728 323 IVYC---GSSDGLVNFWERELN 341 (474)
Q Consensus 323 ~l~~---~~~dg~i~v~d~~~~ 341 (474)
.|++ ......|++|-..+.
T Consensus 303 iLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ceeeeecccccceEEEEEecCe
Confidence 9988 445556999987654
No 337
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.98 E-value=0.0081 Score=53.10 Aligned_cols=201 Identities=13% Similarity=0.064 Sum_probs=108.3
Q ss_pred eccCCeeEEEecCCCCEE-EEEECCCcEEEEEcCCcceeeeeeecC-cceeEEEecCCCeEEEee-CCCcEEEEEcccCC
Q 047728 218 KHFDAISSLSMSEDQNLL-YSASWDKTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDGLVFTGS-ADGTVKVWRRELQG 294 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~l~~~~-~dg~i~iwd~~~~~ 294 (474)
+-...++.|+|+|+.+.| ++....+.|..++. +|+.+..+.-.. +..-.|++..++.++... .++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 355669999999976644 55556777888886 578888775443 567889998888555544 58899999885433
Q ss_pred Cceeeee-----eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc---ccccce-eeee--------cceeeEE
Q 047728 295 KGTKHFF-----SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL---NLSHGG-VLRG--------HKLAILC 357 (474)
Q Consensus 295 ~~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~-~~~~--------~~~~v~~ 357 (474)
....... ......+...+..++|++.++.|+++-+..-..+|.+.. ...... .... ....-+.
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 2211111 111123556799999999888888887776677776653 111100 0000 1122244
Q ss_pred EEec-CCEEEEEeCCCcEEEEECCCCceEEEEeecC-Cc------cceEEEEEeeCCccccccceEEEEEecCCCcEEEE
Q 047728 358 LVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTG-HS------GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429 (474)
Q Consensus 358 ~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-h~------~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw 429 (474)
+.+. +.+++.......|..+|. .++......+.. .. ..--.|+|.++|. |+..++-+...+|
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~---------LYIvsEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN---------LYIVSEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT-----------EEEEETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCC---------EEEEcCCceEEEe
Confidence 4553 567777778888999994 455433344443 11 2467899999986 5555566555544
No 338
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.93 E-value=0.0011 Score=49.59 Aligned_cols=100 Identities=25% Similarity=0.315 Sum_probs=69.4
Q ss_pred eeEEEecC-C---CCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCcee
Q 047728 223 ISSLSMSE-D---QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTK 298 (474)
Q Consensus 223 V~~l~~~~-~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 298 (474)
|++|++.. + .+.|++|+.|..|++|+- .+.+..+.. .+.|..++-...+.++.+..+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R----- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQR----- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcce-----
Confidence 56777765 2 268999999999999973 466666654 56788888777789999999999999975311
Q ss_pred eeeeeeeecccccEEEEEEcC-C--C-CEEEEEcCCCcEE
Q 047728 299 HFFSQTLLKQECAVTALAISP-D--A-AIVYCGSSDGLVN 334 (474)
Q Consensus 299 ~~~~~~~~~~~~~v~~l~~~~-~--~-~~l~~~~~dg~i~ 334 (474)
.........+.++++.. + | ..|++|-.+|.|-
T Consensus 74 ----lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 ----LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ----eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 11122333466665544 2 2 3688888888764
No 339
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.91 E-value=0.0055 Score=59.13 Aligned_cols=66 Identities=20% Similarity=0.354 Sum_probs=46.5
Q ss_pred EEEEEEcCCEEEEeeCC----------C-cEEEEe-CCccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCC
Q 047728 113 IYSLAAAGDLLYTGSDS----------K-NIRVWK-NQREFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSK 178 (474)
Q Consensus 113 i~~~~~~~~~l~tgs~d----------g-~v~vwd-~~~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~ 178 (474)
+.++++.|..+|...++ . .|+||+ .++.+..+.-..+.|.++.|. .+.|+.-..||.++++|+...
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence 44555555555555433 2 488887 445555555445899999998 678999999999999998644
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00014 Score=71.92 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=62.8
Q ss_pred eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccC
Q 047728 223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQ 293 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~ 293 (474)
+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|+++| .++++..-|.|.+|.....
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 4579999988888888888999999988877766677899999999999999 9999999999999987643
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.90 E-value=0.0021 Score=63.22 Aligned_cols=108 Identities=11% Similarity=-0.050 Sum_probs=74.2
Q ss_pred CCCCEEEEEECCCcEEEEEcCC-----cceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCc-----e
Q 047728 230 EDQNLLYSASWDKTFKVWRTSD-----YKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKG-----T 297 (474)
Q Consensus 230 ~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~-----~ 297 (474)
++|++... .++.|.+.|..+ .+.+..+. -......+.++||| .++++..+.+|.|.|+...... .
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 46666665 367899999988 34455554 35667899999999 5666777999999998764320 0
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL 340 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~ 340 (474)
..........-.......+|+++|+...+-.-|..|..|++..
T Consensus 363 ~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 0001111112234455678999999888888999999999876
No 342
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.89 E-value=2.7e-05 Score=65.33 Aligned_cols=142 Identities=23% Similarity=0.241 Sum_probs=92.0
Q ss_pred eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeeccee
Q 047728 275 LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLA 354 (474)
Q Consensus 275 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~ 354 (474)
.+..-+.||.|+-++++...... .....+... ...-.-+..+++|+.+|.|++|..............-...
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~-----rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~ 103 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESC-----RSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES 103 (238)
T ss_pred hhccccCCcccccchhhhhhhhh-----hhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhccccc
Confidence 56677889999988877432210 111111111 1122245678899999999999876333332333333445
Q ss_pred eEEEEec---CCEEEEEeCCCcEEEEECCCCceEEEEeecCCc-cceEEEEEeeCCccccccceEEEEEe--cCCCcEEE
Q 047728 355 ILCLVTA---GNLVFSGSADMSICIWRRKENEHICLSMLTGHS-GPVKCLAVEKDDESLSREKRWILYSG--SLDKSVKM 428 (474)
Q Consensus 355 v~~~~~~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~l~s~--s~Dg~i~v 428 (474)
+.+.-|. +.+.+++..||.|+.|++.-.+. +.....|. .++..+..+..++ +++.+ |.|..++.
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~--~g~~g~h~~~~~e~~ivv~sd~--------~i~~a~~S~d~~~k~ 173 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV--LGYVGQHNFESGEELIVVGSDE--------FLKIADTSHDRVLKK 173 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccCce--eeeeccccCCCcceeEEecCCc--------eEEeeccccchhhhh
Confidence 5555553 55889999999999999987773 34455566 5666666666666 67777 88888999
Q ss_pred EEccCC
Q 047728 429 WRVSEQ 434 (474)
Q Consensus 429 w~~~~~ 434 (474)
|++..-
T Consensus 174 W~ve~~ 179 (238)
T KOG2444|consen 174 WNVEKI 179 (238)
T ss_pred cchhhh
Confidence 988764
No 343
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00049 Score=68.29 Aligned_cols=105 Identities=16% Similarity=0.216 Sum_probs=73.4
Q ss_pred EEEEEEcCCEEEEee----CCCcEEEE-eCCccccccccCccCEEEEEecCC--EEEEEeCCCeEEEEecCCCCcceeee
Q 047728 113 IYSLAAAGDLLYTGS----DSKNIRVW-KNQREFSGFKSNSGLVKAIVISNE--KIFSGHQDGKIRVWKVSSKDASIHKR 185 (474)
Q Consensus 113 i~~~~~~~~~l~tgs----~dg~v~vw-d~~~~~~~~~~h~~~V~~i~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~ 185 (474)
|.++.|+..++|+++ ..|.|.|| |.+++.... .-.-.+++++|++. .|+.|-.-|.+.+|...+.+...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~V-t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht--- 95 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDV-TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT--- 95 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEecCCCCCccc-ccceehhhhccChHHHHHhhccccceeEEEecCCceeee---
Confidence 445555666666654 36788888 444432211 12233566899854 57778888999999887654321
Q ss_pred ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC
Q 047728 186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS 250 (474)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 250 (474)
+-..|..+|..+.|+++|..++++..-|.|.+|...
T Consensus 96 -----------------------------v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 -----------------------------VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred -----------------------------eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 112399999999999999999999999999999875
No 344
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00024 Score=64.41 Aligned_cols=128 Identities=12% Similarity=0.115 Sum_probs=91.1
Q ss_pred EEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC-
Q 047728 244 FKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD- 320 (474)
Q Consensus 244 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~- 320 (474)
+++.+..+.+...-+..+...|..++|+|.. ++..++.+..|+|.|+++... ......+ ..+++++|+-+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~------vssy~a~-~~~wSC~wDlde 247 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV------VSSYIAY-NQIWSCCWDLDE 247 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee------eeheecc-CCceeeeeccCC
Confidence 6777777777777777888999999999986 789999999999999986542 3333334 78999999985
Q ss_pred CCEEEEEcCCCcEEEeecCcccccceeeee--cceeeEEEE--------ecCCEEEEEeCCCcEEEEECC
Q 047728 321 AAIVYCGSSDGLVNFWERELNLSHGGVLRG--HKLAILCLV--------TAGNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 321 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~~--------~~~~~l~sgs~dg~i~iwd~~ 380 (474)
.++|++|...|.|.+||++....+...+.+ ...++..++ +.+.+++....+ +..|++.
T Consensus 248 ~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~ 315 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIV 315 (463)
T ss_pred cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhh
Confidence 568899999999999999877554443332 122333333 235566555544 5566654
No 345
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.82 E-value=0.0026 Score=60.40 Aligned_cols=231 Identities=13% Similarity=0.088 Sum_probs=115.9
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee-e-------c---------CcceeEEEecCCC-eEEE-ee
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI-A-------H---------DDAVNSIVAGFDG-LVFT-GS 280 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~-------~---------~~~v~~v~~~~~~-~l~~-~~ 280 (474)
...+....|+|+|+.++-.. ++.|.+++..+++..+.-. + - -+.-..+.|+||+ .|+. -.
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 45678899999999998876 5789999887764432211 1 0 1223568899999 4443 33
Q ss_pred CCCcEEEEEcc-----------------------------------cCCCceeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728 281 ADGTVKVWRRE-----------------------------------LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY 325 (474)
Q Consensus 281 ~dg~i~iwd~~-----------------------------------~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 325 (474)
.+..|+.+.+. .+... ..............+..+.|.+++..|+
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceecCCCcEEE
Confidence 44444444321 11100 0000001123345678888999888444
Q ss_pred EE--cCCC---cEEEeecCcccccceeeeeccee-----eEEEE-ec-CCEEEEEeCCCcEEEE--ECCCCceEEEEeec
Q 047728 326 CG--SSDG---LVNFWERELNLSHGGVLRGHKLA-----ILCLV-TA-GNLVFSGSADMSICIW--RRKENEHICLSMLT 391 (474)
Q Consensus 326 ~~--~~dg---~i~v~d~~~~~~~~~~~~~~~~~-----v~~~~-~~-~~~l~sgs~dg~i~iw--d~~~~~~~~~~~~~ 391 (474)
+. ..+. .+.++|..++............. ...+. ++ ..++.....||.-+|| +...+. ...+.
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~---~~~lT 276 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK---PRQLT 276 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE---EEESS
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc---eeccc
Confidence 33 3332 35556766553322222222222 23333 34 4556666677765555 444444 33555
Q ss_pred CCccceEE-EEEeeCCccccccceEEEEEecCC--CcEEEEEccCC-CCCCCCCcccccccCCCCCCCccccCCCCCcCC
Q 047728 392 GHSGPVKC-LAVEKDDESLSREKRWILYSGSLD--KSVKMWRVSEQ-APPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQG 467 (474)
Q Consensus 392 ~h~~~v~~-l~~~~~~~~~~~~~~~~l~s~s~D--g~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg 467 (474)
...-.|+. +.+++++.. +.+++..+ +.-.||.+.-. .... .++....+. - +.++|||||
T Consensus 277 ~G~~~V~~i~~~d~~~~~-------iyf~a~~~~p~~r~lY~v~~~~~~~~---~~LT~~~~~---~----~~~~~Spdg 339 (353)
T PF00930_consen 277 SGDWEVTSILGWDEDNNR-------IYFTANGDNPGERHLYRVSLDSGGEP---KCLTCEDGD---H----YSASFSPDG 339 (353)
T ss_dssp -SSS-EEEEEEEECTSSE-------EEEEESSGGTTSBEEEEEETTETTEE---EESSTTSST---T----EEEEE-TTS
T ss_pred cCceeecccceEcCCCCE-------EEEEecCCCCCceEEEEEEeCCCCCe---EeccCCCCC---c----eEEEECCCC
Confidence 55556755 667777663 45555543 35566665543 1111 122211111 1 556899999
Q ss_pred ceeec
Q 047728 468 RICQK 472 (474)
Q Consensus 468 ~~l~~ 472 (474)
+.++-
T Consensus 340 ~y~v~ 344 (353)
T PF00930_consen 340 KYYVD 344 (353)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 98874
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.72 E-value=0.036 Score=50.59 Aligned_cols=224 Identities=14% Similarity=0.180 Sum_probs=121.5
Q ss_pred ecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEE
Q 047728 156 ISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLL 235 (474)
Q Consensus 156 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 235 (474)
..++.|+.|..+| |.++++........ ..+...|..+...++-+.|
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---------------------------------i~~~~~I~ql~vl~~~~~l 50 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---------------------------------ILKLSSITQLSVLPELNLL 50 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---------------------------------EeecceEEEEEEecccCEE
Confidence 3478899999999 88888822211100 0133348899999977777
Q ss_pred EEEECCCcEEEEEcCCcceeeee--------------eecCcceeEEE--ecCCC-eEEEeeCCCcEEEEEcccCCCcee
Q 047728 236 YSASWDKTFKVWRTSDYKCLESV--------------IAHDDAVNSIV--AGFDG-LVFTGSADGTVKVWRRELQGKGTK 298 (474)
Q Consensus 236 ~s~s~dg~i~iwd~~~~~~~~~~--------------~~~~~~v~~v~--~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~ 298 (474)
++-+ |+.+.++++......... ......+...+ -...+ ..++......|.+|..........
T Consensus 51 lvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~ 129 (275)
T PF00780_consen 51 LVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS 129 (275)
T ss_pred EEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc
Confidence 7665 599999998765443311 11123344444 11223 444555556999998875322110
Q ss_pred eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee------------cceeeEEEEec-CCEE
Q 047728 299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG------------HKLAILCLVTA-GNLV 365 (474)
Q Consensus 299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~~v~~~~~~-~~~l 365 (474)
.......-...+..++|. ++.+++|..++ ..+.|+.++... .+... ...++..+..+ +.+|
T Consensus 130 --~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L 203 (275)
T PF00780_consen 130 --KLLKEISLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPS-ELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFL 203 (275)
T ss_pred --ceeEEEEcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCce-EEeCccCCcchhhhcccCCCceEEEEeCCceEE
Confidence 111223334778889988 66777776544 777888754332 12111 11123333333 4555
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 366 FSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 366 ~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
++- |..-.+.|... +......+. -......+++... +|+..+.+ .|.||++.+++
T Consensus 204 l~~--~~~g~fv~~~G-~~~r~~~i~-W~~~p~~~~~~~p----------yli~~~~~-~iEV~~~~~~~ 258 (275)
T PF00780_consen 204 LCY--DNIGVFVNKNG-EPSRKSTIQ-WSSAPQSVAYSSP----------YLIAFSSN-SIEVRSLETGE 258 (275)
T ss_pred EEe--cceEEEEcCCC-CcCcccEEE-cCCchhEEEEECC----------EEEEECCC-EEEEEECcCCc
Confidence 543 33333444433 221111222 1234556666433 66666654 59999999983
No 347
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.71 E-value=0.011 Score=54.91 Aligned_cols=227 Identities=15% Similarity=0.099 Sum_probs=96.0
Q ss_pred EEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEec--CCCeEEEeeC----C-----------------
Q 047728 226 LSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAG--FDGLVFTGSA----D----------------- 282 (474)
Q Consensus 226 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~~~----d----------------- 282 (474)
..++++.+.++-......|+-.|+++.+....+......+-...|. .++..+++.. |
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~ 165 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEAR 165 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC-
T ss_pred eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhC
Confidence 4557777777766666789999999987766665555555434443 3343333321 1
Q ss_pred --CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-----cEEEeecCcccccceeeeecc---
Q 047728 283 --GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-----LVNFWERELNLSHGGVLRGHK--- 352 (474)
Q Consensus 283 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~~~--- 352 (474)
..|.-.|+.+++ ..........+..+.|+|....+++=+..| .-++|-+++.......+..+.
T Consensus 166 p~~~i~~idl~tG~-------~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e 238 (386)
T PF14583_consen 166 PHCRIFTIDLKTGE-------RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGE 238 (386)
T ss_dssp --EEEEEEETTT---------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTE
T ss_pred CCceEEEEECCCCc-------eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCc
Confidence 112222333221 233344556778889999554444333322 135565443322112222221
Q ss_pred -eeeEEEEecCCEEEEE-----eCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC--
Q 047728 353 -LAILCLVTAGNLVFSG-----SADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK-- 424 (474)
Q Consensus 353 -~~v~~~~~~~~~l~sg-----s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg-- 424 (474)
..---+.++|..|.-- +.+..|.-+|..+++...+... .+..-+..++|+. +++-=+.|.
T Consensus 239 ~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~----p~~~H~~ss~Dg~--------L~vGDG~d~p~ 306 (386)
T PF14583_consen 239 SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM----PWCSHFMSSPDGK--------LFVGDGGDAPV 306 (386)
T ss_dssp EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSS--------EEEEEE-----
T ss_pred ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC----CceeeeEEcCCCC--------EEEecCCCCCc
Confidence 1112355677655432 2344667778877764333222 2344556667777 444333332
Q ss_pred --------------cEEEEEccCCCCCCCCC--cccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 425 --------------SVKMWRVSEQAPPLVST--TQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 425 --------------~i~vw~~~~~~~~~~~~--~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
-|.++++..+....... .....+.+ ...+ ..=||+|||||+.++-.|
T Consensus 307 ~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~-~~q~--~hPhp~FSPDgk~VlF~S 369 (386)
T PF14583_consen 307 DVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDG-DRQV--THPHPSFSPDGKWVLFRS 369 (386)
T ss_dssp --------------EEEEEETTTTEEEEEEE-------BTT-BSST--T----EE-TTSSEEEEEE
T ss_pred cccccccceecCCcEEEEeccccCceeeeeeccCcceeecC-CCcc--CCCCCccCCCCCEEEEEC
Confidence 45566665442110000 00001111 1112 245789999999998654
No 348
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.70 E-value=0.0023 Score=47.85 Aligned_cols=55 Identities=22% Similarity=0.342 Sum_probs=44.6
Q ss_pred CEEEEeeCCCcEEEEeCCccccccccCccCEEEEEe-cCCEEEEEeCCCeEEEEecC
Q 047728 121 DLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVI-SNEKIFSGHQDGKIRVWKVS 176 (474)
Q Consensus 121 ~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~-~~~~l~s~~~dg~i~vwd~~ 176 (474)
+-|++|++|..||||+-...+..+.... .|+++.. .+.+++.+-.+|+|-+|+-.
T Consensus 16 ~eLlvGs~D~~IRvf~~~e~~~Ei~e~~-~v~~L~~~~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDEIVAEITETD-KVTSLCSLGGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred ceEEEecCCcEEEEEeCCcEEEEEeccc-ceEEEEEcCCCEEEEEecCCEEEEEeCc
Confidence 4899999999999999887777777555 4555555 48899999999999999763
No 349
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.67 E-value=0.04 Score=49.72 Aligned_cols=155 Identities=17% Similarity=0.173 Sum_probs=96.0
Q ss_pred CCEEEEEe-----CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC
Q 047728 158 NEKIFSGH-----QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ 232 (474)
Q Consensus 158 ~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 232 (474)
+++|++.- ..|.|-|||...+ .. ++. .|..|--.-..+.+.||+
T Consensus 62 G~~LytTEnd~~~g~G~IgVyd~~~~-~~---ri~---------------------------E~~s~GIGPHel~l~pDG 110 (305)
T PF07433_consen 62 GRLLYTTENDYETGRGVIGVYDAARG-YR---RIG---------------------------EFPSHGIGPHELLLMPDG 110 (305)
T ss_pred CCEEEEeccccCCCcEEEEEEECcCC-cE---EEe---------------------------EecCCCcChhhEEEcCCC
Confidence 77787764 4578999999832 11 111 122243344567788888
Q ss_pred CEEEEEE------------------CCCcEEEEEcCCcceeeeee----ecCcceeEEEecCCCeEEEeeCC-C------
Q 047728 233 NLLYSAS------------------WDKTFKVWRTSDYKCLESVI----AHDDAVNSIVAGFDGLVFTGSAD-G------ 283 (474)
Q Consensus 233 ~~l~s~s------------------~dg~i~iwd~~~~~~~~~~~----~~~~~v~~v~~~~~~~l~~~~~d-g------ 283 (474)
+.|+++- .+-.+.+.|..+|+.+.... .|...+..+++..+|.++.+... |
T Consensus 111 ~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~ 190 (305)
T PF07433_consen 111 ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAP 190 (305)
T ss_pred CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccC
Confidence 7777662 23346667788888887743 37788999999999966555432 2
Q ss_pred -cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCccccc
Q 047728 284 -TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSH 344 (474)
Q Consensus 284 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~ 344 (474)
.|-+++.... .............-...+-+|++++++..+++.+ ..+.+.+||..++..+
T Consensus 191 PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 191 PLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred CeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 1333332211 0000001111234467899999999998886665 5678999999887654
No 350
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.67 E-value=0.0095 Score=57.50 Aligned_cols=188 Identities=12% Similarity=0.065 Sum_probs=100.1
Q ss_pred EEecCCCCEEEEEECC----------C-cEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCC
Q 047728 226 LSMSEDQNLLYSASWD----------K-TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQG 294 (474)
Q Consensus 226 l~~~~~~~~l~s~s~d----------g-~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~ 294 (474)
++.+|.|..+|....+ . .|.||+. .|+.+..+.-..+.+.++.|..+..|++...||.+++||+....
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence 3445555555555433 1 4888885 56777776555589999999988888899999999999986221
Q ss_pred Cceeeeee---eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEee-cCccccccee---ee----ec--c--eeeEEEE
Q 047728 295 KGTKHFFS---QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE-RELNLSHGGV---LR----GH--K--LAILCLV 359 (474)
Q Consensus 295 ~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d-~~~~~~~~~~---~~----~~--~--~~v~~~~ 359 (474)
..... ......+..+....+..+|-.++ ..++.+.+.. .......... .. .+ . ..+..+.
T Consensus 113 ---~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 113 ---QFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred ---eechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence 00000 01111112222223333453333 3444444432 2211111000 00 00 0 0112233
Q ss_pred ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 360 TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 360 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
.+....+....++.+.+.+....+ .+. ..+++..+++||+++ +||.-..+|.+.|....-
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~-----~i~-~~~~i~~iavSpng~--------~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFK-----QID-SDGPIIKIAVSPNGK--------FIALFTDSGNLWVVSSDF 247 (410)
T ss_pred cCcceEEEEecCCEEEEEEccccc-----ccc-CCCCeEEEEECCCCC--------EEEEEECCCCEEEEECcc
Confidence 334444444444555534332211 111 246899999999999 888888889988876543
No 351
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.61 E-value=0.018 Score=55.77 Aligned_cols=215 Identities=12% Similarity=0.072 Sum_probs=100.5
Q ss_pred EEEEcCCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec-CCEEEEEeCCCeEEEE-ecCCCCcceeeeecccCcc
Q 047728 115 SLAAAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVW-KVSSKDASIHKRVGTLPTF 192 (474)
Q Consensus 115 ~~~~~~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vw-d~~~~~~~~~~~~~~~~~~ 192 (474)
+..|+|++++. +.||.-.|+......... .+.-...+|. .+.+++-...++|.++ ++.... .....
T Consensus 39 s~npngr~v~V-~g~geY~iyt~~~~r~k~---~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~-~k~i~------- 106 (443)
T PF04053_consen 39 SHNPNGRFVLV-CGDGEYEIYTALAWRNKA---FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEV-VKSIK------- 106 (443)
T ss_dssp EE-TTSSEEEE-EETTEEEEEETTTTEEEE---EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-T-T-----------
T ss_pred EECCCCCEEEE-EcCCEEEEEEccCCcccc---cCceeEEEEecCccEEEEECCCeEEEEEcCcccc-ceEEc-------
Confidence 34456888888 457778888732221111 2233345555 5778888888889996 332221 11110
Q ss_pred ceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecC
Q 047728 193 KDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF 272 (474)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 272 (474)
....+..|-. |.+|...+.+ .|.+||+.+++.+..+... +|..+.|++
T Consensus 107 --------------------------~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~ 154 (443)
T PF04053_consen 107 --------------------------LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSD 154 (443)
T ss_dssp ---------------------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-T
T ss_pred --------------------------CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEEC
Confidence 1112333322 7777776654 7999999999999988643 389999999
Q ss_pred CC-eEEEeeCCCcEEEEEcccC------CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc
Q 047728 273 DG-LVFTGSADGTVKVWRRELQ------GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG 345 (474)
Q Consensus 273 ~~-~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~ 345 (474)
++ +++.. .+..+.+++.... ..+... ...........|.+.+|..+ .++-.+.. .++.+ -.+....
T Consensus 155 ~g~~val~-t~~~i~il~~~~~~~~~~~~~g~e~-~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~ 227 (443)
T PF04053_consen 155 DGELVALV-TKDSIYILKYNLEAVAAIPEEGVED-AFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGETGI 227 (443)
T ss_dssp TSSEEEEE--S-SEEEEEE-HHHHHHBTTTB-GG-GEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEEE
T ss_pred CCCEEEEE-eCCeEEEEEecchhcccccccCchh-ceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcce
Confidence 98 44444 4567788775533 100000 01222222567888888766 33333333 55542 2221110
Q ss_pred eeeeecceeeEEEEecCCEEEEEeCCCcEEEEECC
Q 047728 346 GVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 346 ~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~ 380 (474)
-........++...+..+.++....|+.|..+.+.
T Consensus 228 i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 228 IAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 00112223344445555677777777777766554
No 352
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.53 E-value=0.12 Score=51.70 Aligned_cols=66 Identities=11% Similarity=0.263 Sum_probs=40.7
Q ss_pred CCEEEEeeCCCcEEEEeCC--ccccccccC----ccC-------EEEEEecCCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728 120 GDLLYTGSDSKNIRVWKNQ--REFSGFKSN----SGL-------VKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKR 185 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~--~~~~~~~~h----~~~-------V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 185 (474)
+..|+.++.++.|+-.|.. +.+-.+... ... -..+++.++.++.++.|+.|.-.|..+++......
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 5666667767777776633 222222110 000 11234557788899999999999999998776544
No 353
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.0023 Score=60.55 Aligned_cols=142 Identities=16% Similarity=0.181 Sum_probs=95.4
Q ss_pred EEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--------eEEEeeCCCcEEEEEcccCCCceeeeeeeeee
Q 047728 235 LYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--------LVFTGSADGTVKVWRRELQGKGTKHFFSQTLL 306 (474)
Q Consensus 235 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (474)
|.++.....|+-.|++.|+.+...+.+.+ |+-+.+.|+. .-+.|-.+..|.-||.+.+.............
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 34555566788899999999999988777 7777788775 34567889999999999665532222222222
Q ss_pred cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECC
Q 047728 307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~ 380 (474)
.......|.+-..+| +|++|+.+|.|++||. .+......+.+-..+| +.++.+|++|++.+ +..+.+-++.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 233445555555444 6788999999999997 4434434444444444 66677899887665 5566666653
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.49 E-value=0.077 Score=48.38 Aligned_cols=246 Identities=13% Similarity=0.106 Sum_probs=123.5
Q ss_pred EEcCCEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEecC--CEEEEEeCCCeEEEEecCCCCcceeeeecccCccc
Q 047728 117 AAAGDLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVISN--EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFK 193 (474)
Q Consensus 117 ~~~~~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 193 (474)
...++.|+.|+++| |.+++.. ........+...|..+..-. +.|++- .|+.+.+++++.-...........+...
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccc
Confidence 34588999999999 8888862 11111112333388887763 334333 4599999999876543311100000000
Q ss_pred eeeeeecCCCCeEEEeeeccceeeeccCCeeEEE--ecCCCCEEEEEECCCcEEEEEcCCc-----ceeeeeeecCccee
Q 047728 194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLS--MSEDQNLLYSASWDKTFKVWRTSDY-----KCLESVIAHDDAVN 266 (474)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~--~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~v~ 266 (474)
....-......+...+ -...+...+.+....+|.+|..... +....+.. .+.+.
T Consensus 82 ------------------~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~ 142 (275)
T PF00780_consen 82 ------------------SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPS 142 (275)
T ss_pred ------------------cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcE
Confidence 0000011223344444 1123333344444568998887653 34444433 57788
Q ss_pred EEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeee------eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc
Q 047728 267 SIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQ------TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL 340 (474)
Q Consensus 267 ~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~ 340 (474)
.++|..+ .++.|.. ....+.|+.+........... .......++..+... ++.+|++- |..-.+.|...
T Consensus 143 ~i~~~~~-~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G 217 (275)
T PF00780_consen 143 SIAFLGN-KICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNG 217 (275)
T ss_pred EEEEeCC-EEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCC
Confidence 9999844 5665554 447778887443311100000 001112233334443 34555543 33333344433
Q ss_pred ccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC
Q 047728 341 NLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG 392 (474)
Q Consensus 341 ~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~ 392 (474)
.......+. -......+.....+|++...+ .|.||++.+++ .++.+..
T Consensus 218 ~~~r~~~i~-W~~~p~~~~~~~pyli~~~~~-~iEV~~~~~~~--lvQ~i~~ 265 (275)
T PF00780_consen 218 EPSRKSTIQ-WSSAPQSVAYSSPYLIAFSSN-SIEVRSLETGE--LVQTIPL 265 (275)
T ss_pred CcCcccEEE-cCCchhEEEEECCEEEEECCC-EEEEEECcCCc--EEEEEEC
Confidence 211111221 122344555567788887765 59999999997 3455543
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.46 E-value=0.098 Score=48.96 Aligned_cols=187 Identities=12% Similarity=0.137 Sum_probs=103.2
Q ss_pred CCEEEEEEC----------CCcEEEEEcCCc----ceeeee--eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCC
Q 047728 232 QNLLYSASW----------DKTFKVWRTSDY----KCLESV--IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGK 295 (474)
Q Consensus 232 ~~~l~s~s~----------dg~i~iwd~~~~----~~~~~~--~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~ 295 (474)
..+|++|+. .|.|.++++... ..+..+ ....++|++++.. ++.+++ +..+.|.+|++.....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~-~~g~~l~v~~l~~~~~ 119 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVV-AVGNKLYVYDLDNSKT 119 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEE-EETTEEEEEEEETTSS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEE-eecCEEEEEEccCccc
Confidence 467777652 288999999884 223322 2357899999876 445443 3458999999986551
Q ss_pred ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc-cccceeee-ecceeeEEEE--ecCCEEEEEeCC
Q 047728 296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN-LSHGGVLR-GHKLAILCLV--TAGNLVFSGSAD 371 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~-~~~~~v~~~~--~~~~~l~sgs~d 371 (474)
............+.++... ++++++|.....+.++..+.. .......+ .....+++.. .+++.++.+..+
T Consensus 120 ----l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 120 ----LLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp ----EEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETT
T ss_pred ----chhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCC
Confidence 1222223333456666665 559999998888888744332 11211212 2233344443 366799999999
Q ss_pred CcEEEEECCCC---------ceEEEEeecCCccceEEE---EEeeC--CccccccceEEEEEecCCCcEEEE
Q 047728 372 MSICIWRRKEN---------EHICLSMLTGHSGPVKCL---AVEKD--DESLSREKRWILYSGSLDKSVKMW 429 (474)
Q Consensus 372 g~i~iwd~~~~---------~~~~~~~~~~h~~~v~~l---~~~~~--~~~~~~~~~~~l~s~s~Dg~i~vw 429 (474)
|.+.++..... .......+. ....|+++ ++.|. ... ......++-++.+|.|-+.
T Consensus 194 gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~--~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 194 GNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSE--SPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS---TTEEEEEEEEETTS-EEEE
T ss_pred CeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCc--ccccceEEEEecCCEEEEE
Confidence 99999987521 222222332 23457777 44452 110 0012257777789988844
No 356
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.057 Score=51.74 Aligned_cols=195 Identities=18% Similarity=0.200 Sum_probs=127.2
Q ss_pred eeEEEecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeC---CCcEEEEEcccCCCce
Q 047728 223 ISSLSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA---DGTVKVWRRELQGKGT 297 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~---dg~i~iwd~~~~~~~~ 297 (474)
-..+++++.+..++.. ..++.|.+.|..+.+.......-. ....+++.+++ .+.++.. ++.+.+.|......
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~-- 152 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV-- 152 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE--
Confidence 3467788887755544 456899999988877777665433 66788999998 5554444 67788887664432
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccccc-e----eeeecceeeEEEEecCCEEEEEeCC
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHG-G----VLRGHKLAILCLVTAGNLVFSGSAD 371 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~-~----~~~~~~~~v~~~~~~~~~l~sgs~d 371 (474)
.........+ ..++++|++..+++.. .++.|.++|........ . ...+.......+.+++++++.....
T Consensus 153 ----~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 153 ----TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred ----EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence 2222222233 8899999999766665 78899999976654331 1 2222333457888899877665544
Q ss_pred ---CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEe-cCCCcEEEEEccCC
Q 047728 372 ---MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSG-SLDKSVKMWRVSEQ 434 (474)
Q Consensus 372 ---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~-s~Dg~i~vw~~~~~ 434 (474)
+.+...|..++.........+-. ....+.+.|++. .++.. +..+.+.+-|..+.
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~--------~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGK--------AAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCC--------EEEEEecCCCeEEEEeCCCC
Confidence 58889998887633221122222 466788999998 55555 34477888777664
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00068 Score=65.25 Aligned_cols=94 Identities=18% Similarity=0.230 Sum_probs=76.2
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCccee-EEEecCCC-eEEEeeCCCcEEEEEcccCCCce
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVN-SIVAGFDG-LVFTGSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~-~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 297 (474)
...|.-+.|+|.-.+||.+..+|.|.+..+. .+.+.++..|...++ +++|.||| .+++|-.||+|++.|.+.+..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~-- 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR-- 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc--
Confidence 3467889999999999999999999999988 788888887777777 99999999 899999999999999987654
Q ss_pred eeeeeeeeecccccEEEEEEcC
Q 047728 298 KHFFSQTLLKQECAVTALAISP 319 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~ 319 (474)
.......-...|.++-|.+
T Consensus 97 ---l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 ---LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ---eeccccccccchheeeccc
Confidence 2222333445677777763
No 358
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.057 Score=49.57 Aligned_cols=217 Identities=11% Similarity=0.066 Sum_probs=112.6
Q ss_pred EEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcc-eeeeecccCccceeeeee
Q 047728 122 LLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDAS-IHKRVGTLPTFKDFIKCS 199 (474)
Q Consensus 122 ~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~ 199 (474)
++.+--..+.|.-|+.. .....+.........+..+...++.++..| +.+++.+.+... ........
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g-~~~~~~~~~~~~t~~~~~~~~---------- 107 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEHG-VRLLDPDTGGKITLLAEPEDG---------- 107 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEccc-cEEEeccCCceeEEeccccCC----------
Confidence 55555566667777654 223333333322333344444344444444 677777554431 11110000
Q ss_pred cCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC---------CCcEEEEEcC-CcceeeeeeecCcceeEEE
Q 047728 200 MKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW---------DKTFKVWRTS-DYKCLESVIAHDDAVNSIV 269 (474)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---------dg~i~iwd~~-~~~~~~~~~~~~~~v~~v~ 269 (474)
.-....+.+...|+|.+.++... -..=.+|.+. .+..+..+..+-..-+.|+
T Consensus 108 ------------------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla 169 (307)
T COG3386 108 ------------------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLA 169 (307)
T ss_pred ------------------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceE
Confidence 01134456677777765554333 0111344444 4566666666566678999
Q ss_pred ecCCC-eEEEe-eCCCcEEEEEccc-CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-cEEEeecCcccccc
Q 047728 270 AGFDG-LVFTG-SADGTVKVWRREL-QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-LVNFWERELNLSHG 345 (474)
Q Consensus 270 ~~~~~-~l~~~-~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~ 345 (474)
|+||+ .++.+ +..+.|.-|++.. .................+..-.++...+|.+.+++..+| .|.+|+.+ ++...
T Consensus 170 ~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~ 248 (307)
T COG3386 170 FSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLG 248 (307)
T ss_pred ECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEE
Confidence 99999 44444 4458888887762 111111111122223456677788888998886555554 89999988 55554
Q ss_pred eeeeecceeeEEEEec---CCEEEEEe
Q 047728 346 GVLRGHKLAILCLVTA---GNLVFSGS 369 (474)
Q Consensus 346 ~~~~~~~~~v~~~~~~---~~~l~sgs 369 (474)
.+.... ..+.+..+- .+.|+..+
T Consensus 249 ~i~lP~-~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 249 EIKLPV-KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEECCC-CCCccceEeCCCcCEEEEEe
Confidence 444332 333344332 34444443
No 359
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.012 Score=56.73 Aligned_cols=191 Identities=13% Similarity=0.070 Sum_probs=103.1
Q ss_pred cceeeeeeecCcceeEEEecCCC-eEE-Ee-eCC--CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE
Q 047728 252 YKCLESVIAHDDAVNSIVAGFDG-LVF-TG-SAD--GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC 326 (474)
Q Consensus 252 ~~~~~~~~~~~~~v~~v~~~~~~-~l~-~~-~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 326 (474)
+.....+......+..-.|++++ .++ .. ... ..+.++|+..+..... ....+.-..-+|+|||+.|+.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i-------~~~~g~~~~P~fspDG~~l~f 254 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI-------LNFNGNNGAPAFSPDGSKLAF 254 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee-------eccCCccCCccCCCCCCEEEE
Confidence 33344444445566667888888 222 21 222 3588888886654221 113334455689999987765
Q ss_pred E-cCCCc--EEEeecCcccccceeeee-cceeeEEEEecCCEEEEEe-CCCc--EEEEECCCCceEEEEeecCCccceEE
Q 047728 327 G-SSDGL--VNFWERELNLSHGGVLRG-HKLAILCLVTAGNLVFSGS-ADMS--ICIWRRKENEHICLSMLTGHSGPVKC 399 (474)
Q Consensus 327 ~-~~dg~--i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sgs-~dg~--i~iwd~~~~~~~~~~~~~~h~~~v~~ 399 (474)
. ..||. |.++|+....... +... .....-.++|+|++++-.+ ..|. |.+++.+..... ..+..+ +.-..
T Consensus 255 ~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~--~~~~~ 330 (425)
T COG0823 255 SSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSG--GGNSN 330 (425)
T ss_pred EECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccC--CCCcC
Confidence 4 45665 6666777665332 2111 1122467888998877655 4454 555566666532 222322 22227
Q ss_pred EEEeeCCccccccceEEEEEec-CCCc--EEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728 400 LAVEKDDESLSREKRWILYSGS-LDKS--VKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 400 l~~~~~~~~~~~~~~~~l~s~s-~Dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
-.|+||+. +++..+ .+|. |.+.++.++.. .+.+ . .+.+.=.|++.+||+.+...
T Consensus 331 p~~SpdG~--------~i~~~~~~~g~~~i~~~~~~~~~~-------~~~l-t----~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 331 PVWSPDGD--------KIVFESSSGGQWDIDKNDLASGGK-------IRIL-T----STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred ccCCCCCC--------EEEEEeccCCceeeEEeccCCCCc-------EEEc-c----ccccCCCCCcCCCCceEEEe
Confidence 78999998 444444 3455 55555544421 1111 1 12222346888888887654
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.12 Score=49.54 Aligned_cols=211 Identities=15% Similarity=0.132 Sum_probs=135.3
Q ss_pred CC-EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEE
Q 047728 158 NE-KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236 (474)
Q Consensus 158 ~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~ 236 (474)
+. ..++...++.|.+.|............+. ....++++++++.++
T Consensus 85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~---------------------------------~P~~~~~~~~~~~vY 131 (381)
T COG3391 85 GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL---------------------------------GPVGLAVDPDGKYVY 131 (381)
T ss_pred CCeEEEecCCCCeEEEEcCcccceeeEeeecc---------------------------------CCceEEECCCCCEEE
Confidence 44 44455556889999966655443322221 345789999998888
Q ss_pred EEEC---CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEE-EeeCCCcEEEEEcccCCCceeeeeeeeeeccccc
Q 047728 237 SASW---DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA 311 (474)
Q Consensus 237 s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 311 (474)
.+.. ++++.+.|..+.+.+.....-..+ ..+++.|++ .++ +-..++.|.+.|........ ............
T Consensus 132 V~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~~~~~~~~~~ 208 (381)
T COG3391 132 VANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GSVGSLVGVGTG 208 (381)
T ss_pred EEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--cccccccccCCC
Confidence 7765 689999999999888886554444 889999999 344 44578999999965432210 011112333445
Q ss_pred EEEEEEcCCCCEEEEEcCC---CcEEEeecCcccccceeeeec--ceeeEEEEecCCEEEEEeCC-CcEEEEECCCCceE
Q 047728 312 VTALAISPDAAIVYCGSSD---GLVNFWERELNLSHGGVLRGH--KLAILCLVTAGNLVFSGSAD-MSICIWRRKENEHI 385 (474)
Q Consensus 312 v~~l~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sgs~d-g~i~iwd~~~~~~~ 385 (474)
...+.++|++..+++.... +.+...|..+........... ...-..+.|+|..+.+.... +.+.+-|..+....
T Consensus 209 P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 209 PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred CceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence 6778999999977766544 488888888765543312211 23447788899988888544 88999998876632
Q ss_pred EEEeecCC---ccceEEEEEeeCC
Q 047728 386 CLSMLTGH---SGPVKCLAVEKDD 406 (474)
Q Consensus 386 ~~~~~~~h---~~~v~~l~~~~~~ 406 (474)
...... ...+..+++.+..
T Consensus 289 --~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 289 --KTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred --eeecccccccccceeccceeec
Confidence 222222 2235566665554
No 361
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.36 E-value=0.12 Score=47.59 Aligned_cols=173 Identities=14% Similarity=0.101 Sum_probs=96.5
Q ss_pred eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee-----cCcceeEEEecCCCeEEEeeCCC----------cEEE
Q 047728 223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA-----HDDAVNSIVAGFDGLVFTGSADG----------TVKV 287 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~v~~~~~~~l~~~~~dg----------~i~i 287 (474)
+.++..-..+..|+++. .-+.+++.+++..+..+.. .....+.+.+.|+|.+..++... .-.+
T Consensus 68 ~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l 145 (307)
T COG3386 68 FSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL 145 (307)
T ss_pred cccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence 34444444455555543 3367777765555333321 12456778889999665555441 1134
Q ss_pred EEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-CcEEEeecCc--ccccc---eeeee-cc--eeeEEE
Q 047728 288 WRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-GLVNFWEREL--NLSHG---GVLRG-HK--LAILCL 358 (474)
Q Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g~i~v~d~~~--~~~~~---~~~~~-~~--~~v~~~ 358 (474)
|.+..... .......+-..-+.|+|+||++.|+.+... +.|.-|++.. ..... ..... .. .--+++
T Consensus 146 yr~~p~g~-----~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~v 220 (307)
T COG3386 146 YRVDPDGG-----VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAV 220 (307)
T ss_pred EEEcCCCC-----EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEE
Confidence 44432111 122223334456789999999888877654 7788887652 11111 11111 11 112666
Q ss_pred EecCCEEEEEeCCC-cEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728 359 VTAGNLVFSGSADM-SICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405 (474)
Q Consensus 359 ~~~~~~l~sgs~dg-~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~ 405 (474)
..+|.+-+++-.+| .|.+|+.+ ++. +..+.-....+++++|--.
T Consensus 221 DadG~lw~~a~~~g~~v~~~~pd-G~l--~~~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 221 DADGNLWVAAVWGGGRVVRFNPD-GKL--LGEIKLPVKRPTNPAFGGP 265 (307)
T ss_pred eCCCCEEEecccCCceEEEECCC-CcE--EEEEECCCCCCccceEeCC
Confidence 77788776555554 99999998 663 4444444467888888653
No 362
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.35 E-value=0.012 Score=56.70 Aligned_cols=159 Identities=18% Similarity=0.093 Sum_probs=98.0
Q ss_pred ccCCeeEEEecCCCCEEEEEE---CC-CcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEccc
Q 047728 219 HFDAISSLSMSEDQNLLYSAS---WD-KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRREL 292 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s---~d-g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~ 292 (474)
-...+..-+|+|+++.++... .. ..+.++|+.+++....+. ..+.-..-.|+||| .+++...||...||-+..
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 334566678888887765442 22 459999999887655543 23344456899999 677778888866664443
Q ss_pred CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CCc--EEEeecCcccccceeeeecceeeEEEEecCCEEEEEe
Q 047728 293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DGL--VNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS 369 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~--i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs 369 (474)
.... ...+....+.-+.=.|+|+|+.|+..+. .|. |.+++.+................-.++++|++++..+
T Consensus 270 ~~~~-----~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 270 DGKN-----LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred CCCc-----ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEe
Confidence 3332 1112233333336689999998876654 444 6666777665433333333344677889999888776
Q ss_pred C-CCc--EEEEECCCCc
Q 047728 370 A-DMS--ICIWRRKENE 383 (474)
Q Consensus 370 ~-dg~--i~iwd~~~~~ 383 (474)
. +|. |.+.|+.++.
T Consensus 345 ~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 345 SSGGQWDIDKNDLASGG 361 (425)
T ss_pred ccCCceeeEEeccCCCC
Confidence 4 344 6666665554
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.34 E-value=0.022 Score=58.40 Aligned_cols=136 Identities=12% Similarity=0.124 Sum_probs=90.3
Q ss_pred CCCcEEEEeCC--ccccccccCccC-EEEEEec-------CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeee
Q 047728 128 DSKNIRVWKNQ--REFSGFKSNSGL-VKAIVIS-------NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIK 197 (474)
Q Consensus 128 ~dg~v~vwd~~--~~~~~~~~h~~~-V~~i~~~-------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 197 (474)
....|+-.|+. +.+..+..|... |..++.. +...+.|-.+..+..||.+-........ .
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-----~------ 570 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-----Q------ 570 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec-----c------
Confidence 34455555643 556666666544 7777653 3456778788889999987532110000 0
Q ss_pred eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEE
Q 047728 198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVF 277 (474)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~ 277 (474)
..........+|++-..+| +||+|+.+|.||+||--..+....+.+-..+|..|..+.||..+
T Consensus 571 ----------------~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwi 633 (794)
T PF08553_consen 571 ----------------SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWI 633 (794)
T ss_pred ----------------ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEE
Confidence 0011244567788877665 89999999999999954333344556778999999999999666
Q ss_pred EeeCCCcEEEEEcc
Q 047728 278 TGSADGTVKVWRRE 291 (474)
Q Consensus 278 ~~~~dg~i~iwd~~ 291 (474)
.+..+..|.+++..
T Consensus 634 laTc~tyLlLi~t~ 647 (794)
T PF08553_consen 634 LATCKTYLLLIDTL 647 (794)
T ss_pred EEeecceEEEEEEe
Confidence 67778888888864
No 364
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.32 E-value=0.22 Score=49.85 Aligned_cols=175 Identities=11% Similarity=0.062 Sum_probs=88.9
Q ss_pred EEcCCEEEEeeCCCcEEEEeCC--cccccccc--Cc--cCEE-EEEecCCEEEEEeC------CCeEEEEecCCCCccee
Q 047728 117 AAAGDLLYTGSDSKNIRVWKNQ--REFSGFKS--NS--GLVK-AIVISNEKIFSGHQ------DGKIRVWKVSSKDASIH 183 (474)
Q Consensus 117 ~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~--h~--~~V~-~i~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~ 183 (474)
+..+..++.++.|+.|.-.|.. +.+-.... +. ..+. .-...++.++.+.. +|.|.-+|.++++.+..
T Consensus 117 av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 117 ALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred eEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 3445667777778888777732 33222211 11 1121 11223566666643 68999999999987765
Q ss_pred eeecccCccceeeeee-c--CCCCeEEEeeeccceeeeccCCee-EEEecCCCCEEEEEECC-----C-----------c
Q 047728 184 KRVGTLPTFKDFIKCS-M--KPSNYIEVRRHRNGLWIKHFDAIS-SLSMSEDQNLLYSASWD-----K-----------T 243 (474)
Q Consensus 184 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~s~d-----g-----------~ 243 (474)
........ ...... . ........+. ...+..-...++ .+++.+...+++.+..+ + .
T Consensus 197 ~~~~p~~~--~~~~~~~~~~~~~~~~~tw~--~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s 272 (527)
T TIGR03075 197 RYTVPGDM--GYLDKADKPVGGEPGAKTWP--GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSS 272 (527)
T ss_pred ccCcCCCc--ccccccccccccccccCCCC--CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCcccee
Confidence 44321110 000000 0 0000000000 001111112222 34666666666665521 2 5
Q ss_pred EEEEEcCCcceeeeeeecCccee---------EEEecCCC----eEEEeeCCCcEEEEEcccCCC
Q 047728 244 FKVWRTSDYKCLESVIAHDDAVN---------SIVAGFDG----LVFTGSADGTVKVWRRELQGK 295 (474)
Q Consensus 244 i~iwd~~~~~~~~~~~~~~~~v~---------~v~~~~~~----~l~~~~~dg~i~iwd~~~~~~ 295 (474)
|.-.|+++|+..-.++.....++ -+....++ .++.+..+|.+.+.|.++++.
T Consensus 273 ~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 273 IVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 77889999998877765322222 12222344 577899999999999887653
No 365
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.32 E-value=0.067 Score=51.89 Aligned_cols=185 Identities=14% Similarity=0.090 Sum_probs=88.4
Q ss_pred CCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeee
Q 047728 221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHF 300 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 300 (474)
+.-...+|.+. +.+|+-....+|.|+.--+.+....+.. ...+..|.. |.++....++.|.+||+.+...
T Consensus 69 G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~----- 138 (443)
T PF04053_consen 69 GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETGKL----- 138 (443)
T ss_dssp EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT------SS-EEEEE----SSSEEEEETTEEEEE-TTT--E-----
T ss_pred CceeEEEEecC-ccEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc---CcEEEEECCCCEEEEEhhHcce-----
Confidence 34557888884 4577777788999974323333233332 223444433 6444444555899999986542
Q ss_pred eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc---------cc-cceeeeecceeeEEEEecCCEEEEEeC
Q 047728 301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN---------LS-HGGVLRGHKLAILCLVTAGNLVFSGSA 370 (474)
Q Consensus 301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~---------~~-~~~~~~~~~~~v~~~~~~~~~l~sgs~ 370 (474)
..... -.+|..+.|++++.+++..+.+ .+.+++.+.. .. .......-...|.+..|+++.++-.+.
T Consensus 139 -i~~i~--v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~ 214 (443)
T PF04053_consen 139 -IRRID--VSAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTS 214 (443)
T ss_dssp -EEEES--S-E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-T
T ss_pred -eeEEe--cCCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcC
Confidence 22222 2238999999999999988765 5666654322 00 111222213455555666664444443
Q ss_pred CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 371 DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 371 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
. .|+. +-+++...+..+ ..++.=+...++.. .++....|+.|..+.+..
T Consensus 215 ~-~lkY--l~~Ge~~~i~~l---d~~~yllgy~~~~~--------~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 215 N-HLKY--LVNGETGIIAHL---DKPLYLLGYLPKEN--------RLYLIDRDGNVISYELDL 263 (443)
T ss_dssp T-EEEE--EETTEEEEEEE----SS--EEEEEETTTT--------EEEEE-TT--EEEEE--H
T ss_pred C-eEEE--EEcCCcceEEEc---CCceEEEEEEccCC--------EEEEEECCCCEEEEEECH
Confidence 3 5555 344543223332 35677777777655 688888899998887754
No 366
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.25 E-value=0.00073 Score=39.79 Aligned_cols=37 Identities=41% Similarity=0.703 Sum_probs=32.4
Q ss_pred EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728 386 CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 386 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
+...+..|...|.++.|.+++. ++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGK--------YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCC--------EEEEecCCCeEEEcC
Confidence 3456678889999999999887 899999999999996
No 367
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.05 E-value=0.0019 Score=37.89 Aligned_cols=38 Identities=32% Similarity=0.554 Sum_probs=32.6
Q ss_pred cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEE
Q 047728 252 YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWR 289 (474)
Q Consensus 252 ~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd 289 (474)
++++..+..|...|.++.+.+++ .+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566777888999999999887 899999999999995
No 368
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.95 E-value=0.3 Score=44.80 Aligned_cols=151 Identities=13% Similarity=0.092 Sum_probs=88.2
Q ss_pred CEEEEEECCCcEEEEEcC-Ccceeeeee----ecCcce-eEEEecCC-CeEEEeeCCCcEEEEEcccCCCceeeeeeeee
Q 047728 233 NLLYSASWDKTFKVWRTS-DYKCLESVI----AHDDAV-NSIVAGFD-GLVFTGSADGTVKVWRRELQGKGTKHFFSQTL 305 (474)
Q Consensus 233 ~~l~s~s~dg~i~iwd~~-~~~~~~~~~----~~~~~v-~~v~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 305 (474)
..+.+-|.||.+.-..+. .|+...... ...+++ ..-++... +.++--+.+|.|+--|+........ ..-.+
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~--~~~~~ 225 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFG--KPWSL 225 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEE--EEEES
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccccc--Ccccc
Confidence 457788889999888887 455542221 111222 12233333 3566678899999888875432111 11111
Q ss_pred ec--------ccccEEEEEEcCCCCEEEEEcC--------CC--cEEEeecCcccccceeeeecceeeEEEEecCC-EEE
Q 047728 306 LK--------QECAVTALAISPDAAIVYCGSS--------DG--LVNFWERELNLSHGGVLRGHKLAILCLVTAGN-LVF 366 (474)
Q Consensus 306 ~~--------~~~~v~~l~~~~~~~~l~~~~~--------dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~ 366 (474)
.. ..+.-.-+++++..+.|++--. |+ .|.+||+.+.+.+.++...+....+.++.+.+ +|+
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~ 305 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLY 305 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEE
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEE
Confidence 00 1233445788876666655321 11 47888999998887777777766677777654 665
Q ss_pred EEe-CCCcEEEEECCCCceE
Q 047728 367 SGS-ADMSICIWRRKENEHI 385 (474)
Q Consensus 367 sgs-~dg~i~iwd~~~~~~~ 385 (474)
+.+ .++.+.+||..+++..
T Consensus 306 ~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 306 ALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEETTTTEEEEEETTT--EE
T ss_pred EEcCCCCeEEEEeCcCCcEE
Confidence 544 5799999999999843
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0044 Score=59.92 Aligned_cols=93 Identities=19% Similarity=0.133 Sum_probs=68.5
Q ss_pred CcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEE-EEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728 262 DDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVT-ALAISPDAAIVYCGSSDGLVNFWERE 339 (474)
Q Consensus 262 ~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~~~~~dg~i~v~d~~ 339 (474)
...+.-+.|+|.- .+|.+..+|.|.+..+.-+ + .-....+...++ +++|.|||+.|++|-.||+|++.|.+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q-R------lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQ-R------LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEeccc-e------eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 3457778899987 8999999999988877622 1 233333445555 99999999999999999999999999
Q ss_pred cccccceeeeecceeeEEEEec
Q 047728 340 LNLSHGGVLRGHKLAILCLVTA 361 (474)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~~~~~ 361 (474)
++..+......-...+.+..++
T Consensus 93 ~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 93 KGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred CCCceeccccccccchheeecc
Confidence 8877655433344445555444
No 370
>PHA02713 hypothetical protein; Provisional
Probab=96.93 E-value=0.046 Score=55.16 Aligned_cols=188 Identities=10% Similarity=0.080 Sum_probs=97.3
Q ss_pred CCCEEEEEECC------CcEEEEEcCCcceee--eeeecCcceeEEEecCCCeEEEeeCCC-----cEEEEEcccCCCce
Q 047728 231 DQNLLYSASWD------KTFKVWRTSDYKCLE--SVIAHDDAVNSIVAGFDGLVFTGSADG-----TVKVWRRELQGKGT 297 (474)
Q Consensus 231 ~~~~l~s~s~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~v~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~ 297 (474)
++..++.|+.+ ..+..||..+..-.. .+...... .+++...+...+.|+.++ .+..||.....
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~--- 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-FSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDK--- 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-eeEEEECCEEEEECCcCCCCCCceEEEEECCCCe---
Confidence 55666777653 347778877654321 11111111 123333233667777654 37788876432
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-----------------------cEEEeecCcccccc-eeeeecce
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-----------------------LVNFWERELNLSHG-GVLRGHKL 353 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----------------------~i~v~d~~~~~~~~-~~~~~~~~ 353 (474)
................+++ ++.+.+.|+.++ .+..||.++..-.. ........
T Consensus 379 -W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~ 455 (557)
T PHA02713 379 -WKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI 455 (557)
T ss_pred -EEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc
Confidence 1111111111111222222 577777777653 46778877653211 11111111
Q ss_pred eeEEEEecCCEEEEEeCC------CcEEEEECCC-CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC--
Q 047728 354 AILCLVTAGNLVFSGSAD------MSICIWRRKE-NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK-- 424 (474)
Q Consensus 354 ~v~~~~~~~~~l~sgs~d------g~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg-- 424 (474)
.......++++.+.|+.+ ..+..||..+ .+...+..+.........+.+ ++. +.+.||.|+
T Consensus 456 ~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~--------iyv~Gg~~~~~ 525 (557)
T PHA02713 456 RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNT--------IMMLHCYESYM 525 (557)
T ss_pred cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCE--------EEEEeeeccee
Confidence 222334567777777654 2467899988 676655555544433333333 455 888999888
Q ss_pred cEEEEEccCCC
Q 047728 425 SVKMWRVSEQA 435 (474)
Q Consensus 425 ~i~vw~~~~~~ 435 (474)
++..||..+.+
T Consensus 526 ~~e~yd~~~~~ 536 (557)
T PHA02713 526 LQDTFNVYTYE 536 (557)
T ss_pred ehhhcCccccc
Confidence 67777777653
No 371
>PHA02713 hypothetical protein; Provisional
Probab=96.86 E-value=0.088 Score=53.17 Aligned_cols=66 Identities=6% Similarity=-0.052 Sum_probs=41.6
Q ss_pred CCCEEEEEcCC------CcEEEeecCc-c-cccceeeeecceeeEEEEecCCEEEEEeCCC--cEEEEECCCCceE
Q 047728 320 DAAIVYCGSSD------GLVNFWEREL-N-LSHGGVLRGHKLAILCLVTAGNLVFSGSADM--SICIWRRKENEHI 385 (474)
Q Consensus 320 ~~~~l~~~~~d------g~i~v~d~~~-~-~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg--~i~iwd~~~~~~~ 385 (474)
++++.+.|+.+ ..+..||.++ . ......+.......-....++.+.++|+.|+ .+..||..+.++.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCccccccc
Confidence 46666777654 2467899886 3 2222222223333344455788899999888 7888888887754
No 372
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.85 E-value=0.42 Score=44.83 Aligned_cols=107 Identities=16% Similarity=0.133 Sum_probs=55.9
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEEcCCcce---eeee----eecCcceeEEEecCC----CeEEEeeC-------CC
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC---LESV----IAHDDAVNSIVAGFD----GLVFTGSA-------DG 283 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~----~~~~~~v~~v~~~~~----~~l~~~~~-------dg 283 (474)
..+.|+|.|++++++ +...|.|++++ ..+.. +..+ .........++++|+ +.|.+... ..
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 357899999987666 46699999999 44443 2222 123456788999995 43333322 12
Q ss_pred --cEEEEEcccCCC--ceeeeeeeeee---cccccEEEEEEcCCCCEEEEEcCC
Q 047728 284 --TVKVWRRELQGK--GTKHFFSQTLL---KQECAVTALAISPDAAIVYCGSSD 330 (474)
Q Consensus 284 --~i~iwd~~~~~~--~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~d 330 (474)
.|.-|....... .....+..... .....-..|+|.|++.+.++.+..
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 233333332211 11111222222 234456779999999766665543
No 373
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.84 E-value=0.31 Score=43.18 Aligned_cols=200 Identities=9% Similarity=0.054 Sum_probs=99.7
Q ss_pred ccCccCEEEEEecC--C-EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC
Q 047728 145 KSNSGLVKAIVISN--E-KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD 221 (474)
Q Consensus 145 ~~h~~~V~~i~~~~--~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 221 (474)
.+-...+..|.|++ + .+++....+.|...+.+ ++.+....+. -.+
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~-------------------------------g~~ 65 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD-------------------------------GFG 65 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S-------------------------------S-S
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC-------------------------------CCC
Confidence 34444588999972 3 55666677777766654 3433222211 123
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEEcCCcc------eeeeee-----ecCcceeEEEecCCC-eEEEeeCCCcEEEEE
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYK------CLESVI-----AHDDAVNSIVAGFDG-LVFTGSADGTVKVWR 289 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~-----~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd 289 (474)
-.-.|++..++.++++--.++.+.++++.... ....+. .+...+-.++|.+.+ .|+++-...-..+|.
T Consensus 66 D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~ 145 (248)
T PF06977_consen 66 DYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYE 145 (248)
T ss_dssp SEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEE
T ss_pred CceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEE
Confidence 46678887777666655568999999883321 111121 234568899999986 777777777777887
Q ss_pred cccC--CCceeeeeeee---eecccccEEEEEEcCC-CCEEEEEcCCCcEEEeecCcccccceeeee---------ccee
Q 047728 290 RELQ--GKGTKHFFSQT---LLKQECAVTALAISPD-AAIVYCGSSDGLVNFWERELNLSHGGVLRG---------HKLA 354 (474)
Q Consensus 290 ~~~~--~~~~~~~~~~~---~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~---------~~~~ 354 (474)
+... ........... .......+.+++++|. +.+++.......|..+|......-...+.. .+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpE 225 (248)
T PF06977_consen 146 VNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPE 225 (248)
T ss_dssp EESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEE
T ss_pred EccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCcc
Confidence 7641 11110000001 1123345889999995 556666777788888885433211111111 1234
Q ss_pred eEEEEecCCEEEEEeCCCcEEEE
Q 047728 355 ILCLVTAGNLVFSGSADMSICIW 377 (474)
Q Consensus 355 v~~~~~~~~~l~sgs~dg~i~iw 377 (474)
-+++.++|++.++. +-+..++|
T Consensus 226 GIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 226 GIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEEE-TT--EEEEE-TTTEEEEE
T ss_pred EEEECCCCCEEEEc-CCceEEEe
Confidence 47777777554444 44444443
No 374
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.007 Score=62.19 Aligned_cols=111 Identities=18% Similarity=0.328 Sum_probs=81.5
Q ss_pred ccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEE
Q 047728 148 SGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLS 227 (474)
Q Consensus 148 ~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 227 (474)
.+.+.+.+.-+..++.|+..|.+-..|+...-...... ..-..+|++++
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~n-------------------------------e~v~~~Vtsva 137 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQN-------------------------------ERVQGPVTSVA 137 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcC-------------------------------CccCCcceeeE
Confidence 44455556667788888888888888876642211100 01457899999
Q ss_pred ecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEE---ecCCC-eEEEeeCCCcEEEEEcc
Q 047728 228 MSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV---AGFDG-LVFTGSADGTVKVWRRE 291 (474)
Q Consensus 228 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~---~~~~~-~l~~~~~dg~i~iwd~~ 291 (474)
|+.+|.+++.|-.+|.|.+||+..++.++.+..|..+.+.+- +..++ .++++...|. +|.+.
T Consensus 138 fn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 138 FNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 999999999999999999999999999999988877766654 33344 7888888886 56543
No 375
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.66 E-value=0.16 Score=51.21 Aligned_cols=191 Identities=14% Similarity=0.186 Sum_probs=100.7
Q ss_pred EEEecCCCCEEEEEECC------CcEEEEEcCCcceeeeeeecCcc-eeEEEecCCC-eEEEeeCCCc-----EEEEEcc
Q 047728 225 SLSMSEDQNLLYSASWD------KTFKVWRTSDYKCLESVIAHDDA-VNSIVAGFDG-LVFTGSADGT-----VKVWRRE 291 (474)
Q Consensus 225 ~l~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~-v~~v~~~~~~-~l~~~~~dg~-----i~iwd~~ 291 (474)
++++. ++...++|+.| .++..||..+.+-...-.-.... -.+++.. +| ..++|+.||. +-.||.+
T Consensus 327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE-CCEEEEEeccccccccccEEEecCC
Confidence 34443 45677888888 35677887766533211111111 1122222 45 7888998875 6667765
Q ss_pred cCCCceeeeeeeeeecccccEEEEEE-cCCCCEEEEEcCCC------cEEEeecCcccccce-eeeecceeeEEEEecCC
Q 047728 292 LQGKGTKHFFSQTLLKQECAVTALAI-SPDAAIVYCGSSDG------LVNFWERELNLSHGG-VLRGHKLAILCLVTAGN 363 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~~~l~~~~~dg------~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~ 363 (474)
...= ........ ....... .-++.+.++|+.++ .+..||..++..... ....-....-....++.
T Consensus 405 ~~~W----~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~ 477 (571)
T KOG4441|consen 405 TNKW----TPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGK 477 (571)
T ss_pred CCcc----cccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCE
Confidence 4321 11111111 1111211 22677778887554 467788776632211 11111111223445677
Q ss_pred EEEEEeCCCc-----EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC-----cEEEEEccC
Q 047728 364 LVFSGSADMS-----ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK-----SVKMWRVSE 433 (474)
Q Consensus 364 ~l~sgs~dg~-----i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg-----~i~vw~~~~ 433 (474)
+.+.|+.|+. |..||..+.+...+..+......+-.+.+ ++. +.+.|+.|| +|..||..+
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~--------ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGK--------LYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCE--------EEEEecccCccccceeEEcCCCC
Confidence 8888887763 78899998887655444433333333333 333 778888886 466666555
Q ss_pred C
Q 047728 434 Q 434 (474)
Q Consensus 434 ~ 434 (474)
.
T Consensus 548 d 548 (571)
T KOG4441|consen 548 D 548 (571)
T ss_pred C
Confidence 4
No 376
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.62 E-value=0.0069 Score=51.27 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=80.8
Q ss_pred EEEeeCCCcEEEEeCCcccccc---ccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeee
Q 047728 123 LYTGSDSKNIRVWKNQREFSGF---KSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCS 199 (474)
Q Consensus 123 l~tgs~dg~v~vwd~~~~~~~~---~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (474)
|..-+.||.|+-++..+..... ..|... ..+.--+..++.|+.+|.|.+|............
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~-------------- 97 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRV-------------- 97 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhh--------------
Confidence 4445668888888755322211 112222 3333337789999999999999987332211000
Q ss_pred cCCCCeEEEeeeccceeeeccCCeeEE-EecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecC-cceeEEEec-CCCeE
Q 047728 200 MKPSNYIEVRRHRNGLWIKHFDAISSL-SMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHD-DAVNSIVAG-FDGLV 276 (474)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~-~~~~l 276 (474)
..-...|.++ .--.++.+..+++.|+.|+.|++.-.+.+.....|. .++...... .+..+
T Consensus 98 -----------------~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i 160 (238)
T KOG2444|consen 98 -----------------CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFL 160 (238)
T ss_pred -----------------hcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceE
Confidence 0011222222 222355688899999999999999888877777776 344333333 33355
Q ss_pred EEe--eCCCcEEEEEcc
Q 047728 277 FTG--SADGTVKVWRRE 291 (474)
Q Consensus 277 ~~~--~~dg~i~iwd~~ 291 (474)
..+ +.|..++.|++.
T Consensus 161 ~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 161 KIADTSHDRVLKKWNVE 177 (238)
T ss_pred Eeeccccchhhhhcchh
Confidence 555 667777777765
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.48 E-value=0.54 Score=47.61 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=77.0
Q ss_pred eeEEEecCCCCEEEEEECC------------CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEE
Q 047728 223 ISSLSMSEDQNLLYSASWD------------KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWR 289 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s~d------------g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd 289 (474)
.+.-.|+|+|+.|++.... +.+.+.++..++... .....|..+.|+||| .++... +|.|.+=-
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEE
Confidence 6677889988877766532 233333443333322 235679999999999 444433 57777633
Q ss_pred cccCCCce-eeeeeeee-ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee--cceeeEEEEecCCEE
Q 047728 290 RELQGKGT-KHFFSQTL-LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG--HKLAILCLVTAGNLV 365 (474)
Q Consensus 290 ~~~~~~~~-~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~l 365 (474)
+.....+. .......+ ......+..+.|..++.++ ++..++...+|.+.-.-.....+.. ....+.++......+
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~i 553 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTV 553 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceE
Confidence 32222221 11111112 2233446889999998855 5555554445543222111111111 234455565554556
Q ss_pred EEEeCCCcEEE
Q 047728 366 FSGSADMSICI 376 (474)
Q Consensus 366 ~sgs~dg~i~i 376 (474)
+....++.+.+
T Consensus 554 yv~~~~g~~~l 564 (591)
T PRK13616 554 YVTDARAVLQL 564 (591)
T ss_pred EEEcCCceEEe
Confidence 66666664443
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.058 Score=51.48 Aligned_cols=109 Identities=12% Similarity=0.158 Sum_probs=74.8
Q ss_pred eeEEEecCCCC-------EEEEEECCCcEEEEEcCCcc--eeeeeeec----CcceeEEEecCCCeEEEeeCCCcEEEEE
Q 047728 223 ISSLSMSEDQN-------LLYSASWDKTFKVWRTSDYK--CLESVIAH----DDAVNSIVAGFDGLVFTGSADGTVKVWR 289 (474)
Q Consensus 223 V~~l~~~~~~~-------~l~s~s~dg~i~iwd~~~~~--~~~~~~~~----~~~v~~v~~~~~~~l~~~~~dg~i~iwd 289 (474)
|+-+.+.|+.+ .-+.|-.|..|.-||.+-.. .+.....| .....|.+-..+|.+++|+.+|.||+||
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYd 457 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYD 457 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeeh
Confidence 55556666432 22346678889999987322 22222232 3456778888888999999999999999
Q ss_pred cccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728 290 RELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER 338 (474)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~ 338 (474)
.- +.. ....+.+...+|..+..+.+|++|++.+ +..+.+.++
T Consensus 458 ri-~~~-----AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 458 RI-GRR-----AKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred hh-hhh-----hhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 63 222 3456677888999999999999998654 456666653
No 379
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.46 E-value=0.9 Score=43.64 Aligned_cols=277 Identities=10% Similarity=0.055 Sum_probs=135.9
Q ss_pred CCEEEEeeCCCcEEEEeCCcccc------ccccCccCEEEEEec------CCEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728 120 GDLLYTGSDSKNIRVWKNQREFS------GFKSNSGLVKAIVIS------NEKIFSGHQDGKIRVWKVSSKDASIHKRVG 187 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~~~~~------~~~~h~~~V~~i~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 187 (474)
.+.|++|+.+|.++||+...... .-..-..+|..+... ++..++.=.-..+.||.+.......
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~----- 111 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTV----- 111 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCc-----
Confidence 46999999999999998532111 111234677777653 2234444556678888873322110
Q ss_pred ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC----C-CCEEEEEECCCcEEEEEcCCcceeeeeeecC
Q 047728 188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE----D-QNLLYSASWDKTFKVWRTSDYKCLESVIAHD 262 (474)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~----~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 262 (474)
.......+...-...+. .....+++-| . ..+|++-+.||.+.+++-+.......+.. -
T Consensus 112 -------------~~g~~~~L~~~yeh~l~---~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ 174 (418)
T PF14727_consen 112 -------------EHGNQYQLELIYEHSLQ---RTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F 174 (418)
T ss_pred -------------ccCcEEEEEEEEEEecc---cceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence 00011111111111111 1122233222 2 36788889999999999665443333332 1
Q ss_pred cceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc----------------eeeeeeeeeecccccEEEEE---EcCCCC
Q 047728 263 DAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG----------------TKHFFSQTLLKQECAVTALA---ISPDAA 322 (474)
Q Consensus 263 ~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~----------------~~~~~~~~~~~~~~~v~~l~---~~~~~~ 322 (474)
--.-.+.+.+.. .+++++.+..|..|....-... .+.........-...+..+. ++....
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~ 254 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSES 254 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCc
Confidence 122234555554 8899999999999875321110 00001111111223333333 332333
Q ss_pred EEEEEcCCCcEEEeecCcccccceeeeecceeeEEEE---e----cC---CEEEEEeCCCcEEEEECCCCceEEEEeecC
Q 047728 323 IVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLV---T----AG---NLVFSGSADMSICIWRRKENEHICLSMLTG 392 (474)
Q Consensus 323 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~---~----~~---~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~ 392 (474)
.+++-++ ..+.+.+..........+ .....|+. . .+ ..++.++.++.+.||.-.+-. ..-..
T Consensus 255 ~IvvLge-r~Lf~l~~~G~l~~~krL---d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~----WsA~l 326 (418)
T PF14727_consen 255 DIVVLGE-RSLFCLKDNGSLRFQKRL---DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLV----WSAQL 326 (418)
T ss_pred eEEEEec-ceEEEEcCCCeEEEEEec---CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEE----EecCC
Confidence 3333322 345555443221111112 22222222 1 22 258889999999999644322 22222
Q ss_pred CccceEEEEEee--CCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 393 HSGPVKCLAVEK--DDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 393 h~~~v~~l~~~~--~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
...+| ++.... +-+. +|++-+.+|.+.+-=+.+.
T Consensus 327 ~~~PV-al~v~~~~~~~G-------~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 327 PHVPV-ALSVANFNGLKG-------LIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred CCCCE-EEEecccCCCCc-------eEEEEcCCCcEEEEEeCCC
Confidence 22233 333322 2122 7999999999999877665
No 380
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.45 E-value=0.5 Score=40.53 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=39.3
Q ss_pred EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728 356 LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD 406 (474)
Q Consensus 356 ~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 406 (474)
+++..+|++.++.-..++|...|..+++. +..+.--...|++++|--.+
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~--L~eiklPt~qitsccFgGkn 265 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKI--LLEIKLPTPQITSCCFGGKN 265 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcE--EEEEEcCCCceEEEEecCCC
Confidence 55566889999999999999999999984 44555557889999997553
No 381
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.42 E-value=0.54 Score=47.55 Aligned_cols=227 Identities=16% Similarity=0.220 Sum_probs=112.9
Q ss_pred CCEEEEeeCCC------cEEEEeCCcc----ccccccCccCEEEEEecCCEEEEEeCC-C-----eEEEEecCCCCccee
Q 047728 120 GDLLYTGSDSK------NIRVWKNQRE----FSGFKSNSGLVKAIVISNEKIFSGHQD-G-----KIRVWKVSSKDASIH 183 (474)
Q Consensus 120 ~~~l~tgs~dg------~v~vwd~~~~----~~~~~~h~~~V~~i~~~~~~l~s~~~d-g-----~i~vwd~~~~~~~~~ 183 (474)
+.+++.|+.++ .|..+|.... ...+......+..+...+...++|+.| | ++..||....+...
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~- 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP- 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-
Confidence 55677777763 4667774432 222222222333334446677888888 3 45666666655322
Q ss_pred eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCc-----EEEEEcCCcceeeee
Q 047728 184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKT-----FKVWRTSDYKCLESV 258 (474)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~ 258 (474)
...+... .+.-.+.. -+|.+.++|+.||. |-.||..+.+--..-
T Consensus 364 --~a~M~~~-------------------------R~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va 412 (571)
T KOG4441|consen 364 --VAPMNTK-------------------------RSDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA 412 (571)
T ss_pred --cCCccCc-------------------------cccceeEE----ECCEEEEEeccccccccccEEEecCCCCcccccC
Confidence 1111100 01111111 16778888888864 666776654322111
Q ss_pred eecC-cceeEEEecCCC-eEEEeeCCC------cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC
Q 047728 259 IAHD-DAVNSIVAGFDG-LVFTGSADG------TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD 330 (474)
Q Consensus 259 ~~~~-~~v~~v~~~~~~-~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 330 (474)
.... ..-.+++. -++ ..++|+.++ .+..||..+..= .............. ++ .-++.+.++|+.|
T Consensus 413 ~m~~~r~~~gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W----~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 413 PMLTRRSGHGVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNTW----TLIAPMNTRRSGFG-VA-VLNGKIYVVGGFD 485 (571)
T ss_pred CCCcceeeeEEEE-ECCEEEEEcCcCCCccccceEEEEcCCCCce----eecCCcccccccce-EE-EECCEEEEECCcc
Confidence 1111 11112222 245 677777554 466777654321 11111111111122 22 2257778888877
Q ss_pred Cc-----EEEeecCccccccee-eeecceeeEEEEecCCEEEEEeCCC-----cEEEEECCCCceE
Q 047728 331 GL-----VNFWERELNLSHGGV-LRGHKLAILCLVTAGNLVFSGSADM-----SICIWRRKENEHI 385 (474)
Q Consensus 331 g~-----i~v~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~l~sgs~dg-----~i~iwd~~~~~~~ 385 (474)
+. |..||.++....... .......+-+...++...++|+.|| +|..||..+.++.
T Consensus 486 ~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 486 GTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred CCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 63 677888766433221 2223333344455677888888774 4667777766644
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.42 E-value=0.012 Score=36.79 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=30.3
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC 254 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 254 (474)
....|.+++|+|..++||.++.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456999999999999999999999999998 5544
No 383
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.41 E-value=0.75 Score=42.14 Aligned_cols=155 Identities=12% Similarity=0.076 Sum_probs=73.9
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCcee
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTK 298 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 298 (474)
-...+..+..++++++++++..-..+.-||--...-...-..-...|..+.|.+++.|......|.|+.=+..... ..
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~--~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG--ET 220 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE--EE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc--cc
Confidence 3456888888999998888766555567774322222222234678999999999966556688888887621111 00
Q ss_pred ee-eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee--ecceeeEEEEe-cCCEEEEEeCCCcE
Q 047728 299 HF-FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR--GHKLAILCLVT-AGNLVFSGSADMSI 374 (474)
Q Consensus 299 ~~-~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~-~~~~l~sgs~dg~i 374 (474)
.. .........-.+..++|.+++...++|+.. .+. ...+.++.-.+... .-......+.+ +.+.-++-+.+|.|
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~l 298 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVL 298 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEESTT--EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEE
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCCc-cEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEE
Confidence 00 011122234458999999998888877654 332 23333322222211 11222333332 34555566678877
Q ss_pred EEE
Q 047728 375 CIW 377 (474)
Q Consensus 375 ~iw 377 (474)
.-|
T Consensus 299 l~~ 301 (302)
T PF14870_consen 299 LRY 301 (302)
T ss_dssp EEE
T ss_pred EEe
Confidence 655
No 384
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.37 E-value=0.82 Score=47.73 Aligned_cols=216 Identities=9% Similarity=0.023 Sum_probs=111.9
Q ss_pred CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE-E--EecCCCCE
Q 047728 158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS-L--SMSEDQNL 234 (474)
Q Consensus 158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l--~~~~~~~~ 234 (474)
++.|+.++.++.|.-.|..+++.............. ... ...+....+......... + .-...+..
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~-~~~----------~~cRGvay~~~p~~~~~~~~~~~p~~~~~r 262 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG-RQH----------QTCRGVSYYDAPAAAAGPAAPAAPADCARR 262 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc-ccc----------ccccceEEecCCcccccccccccccccCCE
Confidence 777888888888888888888776655433211000 000 000000000000000000 0 00113568
Q ss_pred EEEEECCCcEEEEEcCCcceeeeeeecCccee-------------EEEec---CCCeEEEeeC----------CCcEEEE
Q 047728 235 LYSASWDKTFKVWRTSDYKCLESVIAHDDAVN-------------SIVAG---FDGLVFTGSA----------DGTVKVW 288 (474)
Q Consensus 235 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~-------------~v~~~---~~~~l~~~~~----------dg~i~iw 288 (474)
++.++.|+.|.-.|.++|+.+..+.. .+.|. .+.-. -++.+++|+. +|.|+-+
T Consensus 263 V~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 263 IILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 88899999999999999998876532 11110 01111 1346666643 6889999
Q ss_pred EcccCCCceeeeeee-----------eeecccccE-EEEEEcCCCCEEEEEcC------------------CCcEEEeec
Q 047728 289 RRELQGKGTKHFFSQ-----------TLLKQECAV-TALAISPDAAIVYCGSS------------------DGLVNFWER 338 (474)
Q Consensus 289 d~~~~~~~~~~~~~~-----------~~~~~~~~v-~~l~~~~~~~~l~~~~~------------------dg~i~v~d~ 338 (474)
|.++++......... ........+ ..++++++..+++.+.. .+.|.-.|.
T Consensus 342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA 421 (764)
T ss_pred ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence 988766433222100 000011111 34566666555555332 234445566
Q ss_pred Ccccccceeeeec-c---------eeeEEEEe-cCC---EEEEEeCCCcEEEEECCCCceE
Q 047728 339 ELNLSHGGVLRGH-K---------LAILCLVT-AGN---LVFSGSADMSICIWRRKENEHI 385 (474)
Q Consensus 339 ~~~~~~~~~~~~~-~---------~~v~~~~~-~~~---~l~sgs~dg~i~iwd~~~~~~~ 385 (474)
++++..-.....| . .....+.. +|+ .++.++.+|.+.++|.++++.+
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 6665443332212 1 11233433 453 8999999999999999998743
No 385
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.32 E-value=0.021 Score=57.66 Aligned_cols=173 Identities=13% Similarity=0.214 Sum_probs=101.4
Q ss_pred eeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCC-CceeeeeeeeeecccccEEEEEEcC---CCCEEEEEcCCC
Q 047728 258 VIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQG-KGTKHFFSQTLLKQECAVTALAISP---DAAIVYCGSSDG 331 (474)
Q Consensus 258 ~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~~~dg 331 (474)
+++..+.|-.+.|.... .+. -.-|.+.|||+..-. +................+.-+.|.| +.-++.++..++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 34555666666665433 222 344678889876422 1122222333334445556667766 667777788888
Q ss_pred cEEEeecCcccccceeeeeccee-------------eEEEEecCCEEEEEeCCCcEEEEECCC-C--ceEEEEeecCCc-
Q 047728 332 LVNFWERELNLSHGGVLRGHKLA-------------ILCLVTAGNLVFSGSADMSICIWRRKE-N--EHICLSMLTGHS- 394 (474)
Q Consensus 332 ~i~v~d~~~~~~~~~~~~~~~~~-------------v~~~~~~~~~l~sgs~dg~i~iwd~~~-~--~~~~~~~~~~h~- 394 (474)
.|++....+... .++++|... +-.+++||..++.+..||.+++|.+.- + ...|+..++.|+
T Consensus 206 ~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 206 EIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred ceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence 888866554322 344445433 245789999999999999999997741 1 233566777787
Q ss_pred cceEEEEEeeCCccccccceEE-EEEec-CCCcEEEEEccCC
Q 047728 395 GPVKCLAVEKDDESLSREKRWI-LYSGS-LDKSVKMWRVSEQ 434 (474)
Q Consensus 395 ~~v~~l~~~~~~~~~~~~~~~~-l~s~s-~Dg~i~vw~~~~~ 434 (474)
.+-.|.-++.+.......+.|. +++++ ...-+++|.-...
T Consensus 284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w 325 (1283)
T KOG1916|consen 284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW 325 (1283)
T ss_pred CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccch
Confidence 4444444444333233334443 34443 3456999987665
No 386
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.20 E-value=0.13 Score=43.89 Aligned_cols=122 Identities=11% Similarity=0.122 Sum_probs=76.4
Q ss_pred CcEEEEeCCccccccccCccCEEEEEec---CCEEEEEeCCCeEEEEe--cCCCCcceeeeecccCccceeeeeecCCCC
Q 047728 130 KNIRVWKNQREFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWK--VSSKDASIHKRVGTLPTFKDFIKCSMKPSN 204 (474)
Q Consensus 130 g~v~vwd~~~~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (474)
|.++.|-....+......-+--+.++|+ ..+.++-+.+-+|.-|| ..++.......+-.
T Consensus 139 g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~d---------------- 202 (310)
T KOG4499|consen 139 GELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFD---------------- 202 (310)
T ss_pred cEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEE----------------
Confidence 4455555444444444444445667787 23566677788888888 55555432222111
Q ss_pred eEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC
Q 047728 205 YIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG 274 (474)
Q Consensus 205 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~ 274 (474)
++.... + ....--.+++..+|++.+++-..++|...|..+|+.+..++-....|++++|.-.+
T Consensus 203 ---lrk~~~--~--e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn 265 (310)
T KOG4499|consen 203 ---LRKSQP--F--ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKN 265 (310)
T ss_pred ---eccCCC--c--CCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCC
Confidence 111000 0 11112234456688888888888999999999999999999999999999998765
No 387
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.18 E-value=1.2 Score=42.26 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=65.6
Q ss_pred CcceeEEEecCCCe-EEEe--eCCC---cEEEEEcccCCCceeeeeeeeeecccccEEEEEEc-CCC-CEEEEEcCCCcE
Q 047728 262 DDAVNSIVAGFDGL-VFTG--SADG---TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAIS-PDA-AIVYCGSSDGLV 333 (474)
Q Consensus 262 ~~~v~~v~~~~~~~-l~~~--~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~-~~l~~~~~dg~i 333 (474)
...+..+.|.+++. ++.. ..+. .+.++|...+.. .........+--.......+. +++ .+|.....+|.-
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~--~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~ 260 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET--RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYR 260 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC--EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce--eEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCc
Confidence 34566777877773 4433 2222 245556554322 111111111111222344444 544 455555577765
Q ss_pred EE--eecCcccccceeeeecce---eeEEEEecCCEE-EEEeCCC----cEEEEECC-CCceEEEEeecCCccceEEEEE
Q 047728 334 NF--WERELNLSHGGVLRGHKL---AILCLVTAGNLV-FSGSADM----SICIWRRK-ENEHICLSMLTGHSGPVKCLAV 402 (474)
Q Consensus 334 ~v--~d~~~~~~~~~~~~~~~~---~v~~~~~~~~~l-~sgs~dg----~i~iwd~~-~~~~~~~~~~~~h~~~v~~l~~ 402 (474)
+| ++...+.. ..+..... .+..+..+++.| +++..++ .|..-++. .+.. ..+....+.-..+.|
T Consensus 261 hly~~~~~~~~~--~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~---~~LT~~~~~~~~~~~ 335 (353)
T PF00930_consen 261 HLYLYDLDGGKP--RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP---KCLTCEDGDHYSASF 335 (353)
T ss_dssp EEEEEETTSSEE--EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE---EESSTTSSTTEEEEE
T ss_pred EEEEEcccccce--eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe---EeccCCCCCceEEEE
Confidence 55 45554432 22222222 346666665544 4665532 44445556 4543 344433333379999
Q ss_pred eeCCcc
Q 047728 403 EKDDES 408 (474)
Q Consensus 403 ~~~~~~ 408 (474)
+|+++.
T Consensus 336 Spdg~y 341 (353)
T PF00930_consen 336 SPDGKY 341 (353)
T ss_dssp -TTSSE
T ss_pred CCCCCE
Confidence 999983
No 388
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.13 E-value=0.22 Score=44.64 Aligned_cols=152 Identities=15% Similarity=0.065 Sum_probs=86.8
Q ss_pred cEEEEEEcCCCCEEEEEc---CCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEE-CCCCceEE
Q 047728 311 AVTALAISPDAAIVYCGS---SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWR-RKENEHIC 386 (474)
Q Consensus 311 ~v~~l~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd-~~~~~~~~ 386 (474)
.+.+.+++++++.++... ....++++..... ......+....--++.+++...+....+...+++. ...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688999999999877665 3334555554333 32333444445566777777777767677777774 33333221
Q ss_pred EE-eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC--CCCCcccccccCCCCCCCccccCCCC
Q 047728 387 LS-MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP--LVSTTQQHPLEGHGVAPNSLPYAPSF 463 (474)
Q Consensus 387 ~~-~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~--~~~~~~~~~~~~~~~~v~~l~~~p~~ 463 (474)
.. ....-.+.|+.+.++||+.... +++....++.|.|=-+.....- ................+.++ +|
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA-----~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v----~W 173 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVA-----VVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDV----AW 173 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEE-----EEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceee----ee
Confidence 11 1111122899999999998421 2333345677888776643222 22222222222334567777 67
Q ss_pred CcCCceeecc
Q 047728 464 SSQGRICQKR 473 (474)
Q Consensus 464 s~Dg~~l~~~ 473 (474)
.+|+++++-.
T Consensus 174 ~~~~~L~V~~ 183 (253)
T PF10647_consen 174 SDDSTLVVLG 183 (253)
T ss_pred cCCCEEEEEe
Confidence 7778877643
No 389
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.90 E-value=1.7 Score=41.51 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=78.5
Q ss_pred CCeeEEEecCCCCEEEEEE-----------CCC-cEEEEEcCC--cc--eeeeeeecCcceeEEEecCCCeEEEeeCCCc
Q 047728 221 DAISSLSMSEDQNLLYSAS-----------WDK-TFKVWRTSD--YK--CLESVIAHDDAVNSIVAGFDGLVFTGSADGT 284 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~ 284 (474)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+...-.....+++.+++ |+++.....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 3566889999998777643 223 677776543 32 223333334456889999898 555555543
Q ss_pred EEEEEcccCCCc--eeeeeeeeeec----ccccEEEEEEcCCCCEEEEEcCC-------------------CcEEEeecC
Q 047728 285 VKVWRRELQGKG--TKHFFSQTLLK----QECAVTALAISPDAAIVYCGSSD-------------------GLVNFWERE 339 (474)
Q Consensus 285 i~iwd~~~~~~~--~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~~~~~d-------------------g~i~v~d~~ 339 (474)
.++.|....... ....+...+.. +......++|.|+|.+.++-+.. |.|.-++.+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 344454432211 11122222222 23457789999999876654421 334445544
Q ss_pred cccccceeeeeccee-eEEEEecCCEEEEEe
Q 047728 340 LNLSHGGVLRGHKLA-ILCLVTAGNLVFSGS 369 (474)
Q Consensus 340 ~~~~~~~~~~~~~~~-v~~~~~~~~~l~sgs 369 (474)
.... ..+..++..+ -+++.++|+++++-.
T Consensus 173 g~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 3321 1222233322 267777787776644
No 390
>PHA03098 kelch-like protein; Provisional
Probab=95.87 E-value=0.5 Score=47.82 Aligned_cols=188 Identities=11% Similarity=0.079 Sum_probs=87.9
Q ss_pred CCCEEEEEECCC------cEEEEEcCCcceeeeeeec-CcceeEEEecCCCeEEEeeCCC-----cEEEEEcccCCCcee
Q 047728 231 DQNLLYSASWDK------TFKVWRTSDYKCLESVIAH-DDAVNSIVAGFDGLVFTGSADG-----TVKVWRRELQGKGTK 298 (474)
Q Consensus 231 ~~~~l~s~s~dg------~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~ 298 (474)
++..++.|+.++ .+..||..+.+....-... ...-.+++...+..++.|+.++ .+..||.....- .
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W--~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKW--R 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCce--e
Confidence 455666666432 5778888765542211111 1111222222223667777652 466777653321 1
Q ss_pred eeeeeeeecccccEEEEEEcCCCCEEEEEcCC------CcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEEeCC
Q 047728 299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSD------GLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSGSAD 371 (474)
Q Consensus 299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sgs~d 371 (474)
............ +++ .-++++++.|+.+ ..+..||..+..-... ..........+...++.+++.|+.+
T Consensus 372 --~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 447 (534)
T PHA03098 372 --EEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGIS 447 (534)
T ss_pred --eCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCcc
Confidence 111111111111 112 2256666777632 3578888876532111 1111111122344466666777643
Q ss_pred --------CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC-----CcEEEEEccCC
Q 047728 372 --------MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD-----KSVKMWRVSEQ 434 (474)
Q Consensus 372 --------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D-----g~i~vw~~~~~ 434 (474)
..+.+||..+.+...+..+.........+. -++. +++.||.+ ..|.+||..+.
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~--------iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNK--------IYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCE--------EEEEcCCcCCcccceeEEEeCCCC
Confidence 238889998877554332221111111222 2555 66677654 46788887664
No 391
>PHA03098 kelch-like protein; Provisional
Probab=95.87 E-value=0.62 Score=47.11 Aligned_cols=155 Identities=13% Similarity=0.082 Sum_probs=72.6
Q ss_pred CCCEEEEEECC-----CcEEEEEcCCcceeeeeee-cCcceeEEEecCCCeEEEeeCC------CcEEEEEcccCCCcee
Q 047728 231 DQNLLYSASWD-----KTFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDGLVFTGSAD------GTVKVWRRELQGKGTK 298 (474)
Q Consensus 231 ~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~ 298 (474)
++.+++.|+.+ ..+..||..+.+-...-.. +...-.+++...+..++.|+.+ ..+..||+.+..=
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W--- 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW--- 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCee---
Confidence 56667777755 3467788766543221110 1111122233323356666632 3577888764321
Q ss_pred eeeeeeeecccccEEEEEEcCCCCEEEEEcCCC--------cEEEeecCcccccce-eeeecceeeEEEEecCCEEEEEe
Q 047728 299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDG--------LVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSGS 369 (474)
Q Consensus 299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--------~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sgs 369 (474)
............. ++ ...++.+++.|+.+. .+.+||..+..-... ..............++.+++.|+
T Consensus 419 -~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG 495 (534)
T PHA03098 419 -SKGSPLPISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGG 495 (534)
T ss_pred -eecCCCCccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcC
Confidence 1111111111111 12 222556666666432 378888876532211 01111111122334677777777
Q ss_pred CC-----CcEEEEECCCCceEEEEeec
Q 047728 370 AD-----MSICIWRRKENEHICLSMLT 391 (474)
Q Consensus 370 ~d-----g~i~iwd~~~~~~~~~~~~~ 391 (474)
.+ ..+.+||..+.+...+..+.
T Consensus 496 ~~~~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 496 DKYEYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred CcCCcccceeEEEeCCCCEEEecCCCc
Confidence 54 47889998887755443333
No 392
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.70 E-value=1.2 Score=45.32 Aligned_cols=174 Identities=15% Similarity=0.112 Sum_probs=92.2
Q ss_pred CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee------CCCcEEEEEcccCCCceeeeeeeeeecccccEE
Q 047728 241 DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS------ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVT 313 (474)
Q Consensus 241 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 313 (474)
+|.+.-.+-..-..+.-..+....+...+++|++ .++... .|..-.||=....+.. ..... ....+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-----~~lt~--g~~~t 400 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-----VQVLE--GHSLT 400 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-----eeeec--CCCCC
Confidence 6766655433322332222333467788999999 443333 2444445533322221 11111 12377
Q ss_pred EEEEcCCCCEEEEEcCC------------CcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEE---EE
Q 047728 314 ALAISPDAAIVYCGSSD------------GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICI---WR 378 (474)
Q Consensus 314 ~l~~~~~~~~l~~~~~d------------g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~i---wd 378 (474)
.-.|+|+|..|++.... +.+.+.+++.+.... ........+.+++||..++... ++.|++ -.
T Consensus 401 ~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr 477 (591)
T PRK13616 401 RPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQ 477 (591)
T ss_pred CceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEe
Confidence 88999998877766432 233333443332221 1123355577889999888766 577777 44
Q ss_pred CCCCceEE--EEeec-CCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 379 RKENEHIC--LSMLT-GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 379 ~~~~~~~~--~~~~~-~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
...+.... ...+. +-...+..+.|..++. ++ .+..++...+|.+.-
T Consensus 478 ~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~--------L~-V~~~~~~~~v~~v~v 526 (591)
T PRK13616 478 TEDGQYALTNPREVGPGLGDTAVSLDWRTGDS--------LV-VGRSDPEHPVWYVNL 526 (591)
T ss_pred CCCCceeecccEEeecccCCccccceEecCCE--------EE-EEecCCCCceEEEec
Confidence 34444211 01122 2334468899999987 44 445555566676654
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.62 E-value=0.036 Score=34.61 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=28.4
Q ss_pred ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 394 SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 394 ~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
...|..++|+|... +||.+..||.|.+++++
T Consensus 11 ~~~v~~~~w~P~md--------LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD--------LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCC--------EEEEEECCCeEEEEECC
Confidence 45699999999999 99999999999999993
No 394
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=1.6 Score=38.97 Aligned_cols=202 Identities=13% Similarity=0.095 Sum_probs=115.2
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee--cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCce
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA--HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 297 (474)
.+-+..+.++ +++.+.+.++.-++|.|+.+......+.. ..+.-.++..+-+ +..++..|.-+.+.|+.......
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn-~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGN-YAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCC-EEEEeeccCcEEEEECCCCCCce
Confidence 3445667776 45777888888899999987654333321 1244455555422 66666667777788887654421
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecce-eeEEEEecCCEEEEEeCCCcEEE
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL-AILCLVTAGNLVFSGSADMSICI 376 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~l~sgs~dg~i~i 376 (474)
+..........-..++.+ |++-+.+..|+-+.+.|+.....+..+-.-... .+..+++.+++....-.+--+.+
T Consensus 163 ---lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvli 237 (370)
T COG5276 163 ---LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLI 237 (370)
T ss_pred ---eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEE
Confidence 222222333333556665 667777889999999999877555332222222 55666666666555555666777
Q ss_pred EECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728 377 WRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP 437 (474)
Q Consensus 377 wd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~ 437 (474)
-|..+.....+.-...-..++..-.|.-.++ +.+....+.-+.+-|+++...+
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~--------~~Yvadga~gl~~idisnp~sp 290 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGE--------YAYVADGAKGLPIIDISNPPSP 290 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccc--------eeeeeccccCceeEeccCCCCC
Confidence 7877665332222222222222212222333 5556666666777777665444
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.29 E-value=0.49 Score=44.80 Aligned_cols=120 Identities=13% Similarity=0.144 Sum_probs=59.7
Q ss_pred eEEEecCCCCEEEEEE--------------------CCCcEEEEEcCCcceeeeeeecC--cceeEEEecCCC---e-EE
Q 047728 224 SSLSMSEDQNLLYSAS--------------------WDKTFKVWRTSDYKCLESVIAHD--DAVNSIVAGFDG---L-VF 277 (474)
Q Consensus 224 ~~l~~~~~~~~l~s~s--------------------~dg~i~iwd~~~~~~~~~~~~~~--~~v~~v~~~~~~---~-l~ 277 (474)
.++-|.|..+.+++.. ...++.+||+.+.+.++++.... ..+..|.|..+. . ++
T Consensus 184 YDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFv 263 (461)
T PF05694_consen 184 YDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFV 263 (461)
T ss_dssp --EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEE
T ss_pred CCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEE
Confidence 4555666666666653 24679999999999999987543 235566666543 2 33
Q ss_pred EeeCCCcEEEEEcccCCCceeeeeeeeee-----------------cccccEEEEEEcCCCCEEEEEc-CCCcEEEeecC
Q 047728 278 TGSADGTVKVWRRELQGKGTKHFFSQTLL-----------------KQECAVTALAISPDAAIVYCGS-SDGLVNFWERE 339 (474)
Q Consensus 278 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----------------~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~ 339 (474)
.+.-..+|..|-...... .......... .-..-|+.|.++.|.++|++.+ .+|.|+.||+.
T Consensus 264 g~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 264 GCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred EEeccceEEEEEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 333344444443321111 1100111110 0134589999999999988765 58999999998
Q ss_pred ccccc
Q 047728 340 LNLSH 344 (474)
Q Consensus 340 ~~~~~ 344 (474)
.....
T Consensus 343 DP~~P 347 (461)
T PF05694_consen 343 DPFNP 347 (461)
T ss_dssp STTS-
T ss_pred CCCCC
Confidence 76443
No 396
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.28 E-value=2 Score=38.05 Aligned_cols=191 Identities=10% Similarity=0.085 Sum_probs=119.4
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeee
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHF 300 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~ 300 (474)
.-..++-.|||..-+++...+.|--.|-.+++....-.+.......|...||+ .-++-+.. -|.-.|.++... ..
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev---t~ 138 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV---TR 138 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce---EE
Confidence 34567778899888999888889889999998776655666667788888998 33332222 444445433221 11
Q ss_pred eeeeeecccccEEEEEEcCCCCEEEEEcCC---------CcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC
Q 047728 301 FSQTLLKQECAVTALAISPDAAIVYCGSSD---------GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD 371 (474)
Q Consensus 301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d---------g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d 371 (474)
+...............|++.|++-+++... +.|++|+.. .+....-+|..++|..-++.-.+
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP---------qG~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP---------QGGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC---------CCCCCcceEECCCCcEEEEeccc
Confidence 223344456678889999999988887532 233344332 23333457888888888887777
Q ss_pred CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
+.|-..|...+....+-.-.........+--+|.+. +-+|-...+.+..+|-..
T Consensus 210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~--------~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR--------AWITTWGTGSLHRFDPSV 263 (353)
T ss_pred cceEEcccccCCcceecCCCcccccccccccCccCc--------EEEeccCCceeeEeCccc
Confidence 788777776664322222223233345555566666 666666666666666544
No 397
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.24 E-value=3.2 Score=40.34 Aligned_cols=199 Identities=13% Similarity=0.090 Sum_probs=101.5
Q ss_pred CeeEEEecCCCCEEEEE-ECCC----cEEEEEcCCcceeeeeeecCcceeEEEecCCC-e-EEEeeCC----------Cc
Q 047728 222 AISSLSMSEDQNLLYSA-SWDK----TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-L-VFTGSAD----------GT 284 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~-s~dg----~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~-l~~~~~d----------g~ 284 (474)
.+....++|++++++.+ +..| .|+++|+.+++.+....... ....+.|.+++ . +.+...+ ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467889999988855 3333 49999999997765432211 12239999997 4 4443332 12
Q ss_pred EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC----CcEEEeecCcc---cccceeeee-cceeeE
Q 047728 285 VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD----GLVNFWERELN---LSHGGVLRG-HKLAIL 356 (474)
Q Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~v~d~~~~---~~~~~~~~~-~~~~v~ 356 (474)
|+.|.+.+..... .++-...........+..++++++|+..... ..+.+.|+... ......+.. ......
T Consensus 204 v~~~~~gt~~~~d--~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 204 VYRHKLGTPQSED--ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEETTS-GGG---EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred EEEEECCCChHhC--eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 6666664432211 1111111112226788899999987764332 34777777764 112222222 222223
Q ss_pred EEEecCCEEEEEe----CCCcEEEEECCCCce-EEEEeecCCcc--ceEEEEEeeCCccccccceEEEEEecCCC--cEE
Q 047728 357 CLVTAGNLVFSGS----ADMSICIWRRKENEH-ICLSMLTGHSG--PVKCLAVEKDDESLSREKRWILYSGSLDK--SVK 427 (474)
Q Consensus 357 ~~~~~~~~l~sgs----~dg~i~iwd~~~~~~-~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg--~i~ 427 (474)
.+...+..++.-+ ..+.|.-.++..... .....+..+.. .+..+....+ . +++.--.++ .|+
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~--------Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD-Y--------LVLSYRENGSSRLR 352 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT-E--------EEEEEEETTEEEEE
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC-E--------EEEEEEECCccEEE
Confidence 3333355443332 236677777766542 01123444444 3445544332 1 555555555 477
Q ss_pred EEEcc
Q 047728 428 MWRVS 432 (474)
Q Consensus 428 vw~~~ 432 (474)
++++.
T Consensus 353 v~~~~ 357 (414)
T PF02897_consen 353 VYDLD 357 (414)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 88887
No 398
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.20 E-value=0.69 Score=45.25 Aligned_cols=170 Identities=15% Similarity=0.225 Sum_probs=97.8
Q ss_pred cceeEEEecCCC-eEEEee--CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC----CCEEEEEcCCCcEEE
Q 047728 263 DAVNSIVAGFDG-LVFTGS--ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD----AAIVYCGSSDGLVNF 335 (474)
Q Consensus 263 ~~v~~v~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~l~~~~~dg~i~v 335 (474)
.++..++|.... .+++.- .+|.+++=| ....+.-..|..++|.|- ...|++.-....|.+
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd-------------s~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtV 86 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD-------------SKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTV 86 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC-------------ccEeeccceeeeeeecCcccCCCCceEEEeccceEEE
Confidence 467888887433 344332 233333322 233445566999999994 346666778889999
Q ss_pred eecCccccc-ceeeeec------ceee----EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEee
Q 047728 336 WERELNLSH-GGVLRGH------KLAI----LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK 404 (474)
Q Consensus 336 ~d~~~~~~~-~~~~~~~------~~~v----~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~ 404 (474)
|-+...... .+.+... ..++ .-|+|....|++-.....-.++++..........+ .-.+-|.|.+|.+
T Consensus 87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~ 165 (671)
T PF15390_consen 87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTK 165 (671)
T ss_pred EEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecC
Confidence 987522110 1111111 1111 34566677777777666656677764433223334 4567899999999
Q ss_pred CCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728 405 DDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ 471 (474)
Q Consensus 405 ~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~ 471 (474)
||..+ ++|.| ..=.-+|||-.... ...+.|+|.|.-+|-++.
T Consensus 166 DG~RL------VVAvG-SsLHSyiWd~~qKt------------------L~~CsfcPVFdv~~~Ics 207 (671)
T PF15390_consen 166 DGQRL------VVAVG-SSLHSYIWDSAQKT------------------LHRCSFCPVFDVGGYICS 207 (671)
T ss_pred cCCEE------EEEeC-CeEEEEEecCchhh------------------hhhCCcceeecCCCceEE
Confidence 99842 33444 34456788754431 234567777777776654
No 399
>PHA02790 Kelch-like protein; Provisional
Probab=95.16 E-value=1.6 Score=43.36 Aligned_cols=183 Identities=13% Similarity=0.109 Sum_probs=88.1
Q ss_pred CCCEEEEEECCC-----cEEEEEcCCcceee--eeeecCcceeEEEecCCC-eEEEeeCCC--cEEEEEcccCCCceeee
Q 047728 231 DQNLLYSASWDK-----TFKVWRTSDYKCLE--SVIAHDDAVNSIVAGFDG-LVFTGSADG--TVKVWRRELQGKGTKHF 300 (474)
Q Consensus 231 ~~~~l~s~s~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~v~~~~~~-~l~~~~~dg--~i~iwd~~~~~~~~~~~ 300 (474)
++.++++|+.++ .+..||..+.+... .+...... .+++. -++ ..++|+.++ .+..||..... ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~-~~~~iYviGG~~~~~sve~ydp~~n~----W~ 344 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVP-ANNKLYVVGGLPNPTSVERWFHGDAA----WV 344 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEE-ECCEEEEECCcCCCCceEEEECCCCe----EE
Confidence 345566776543 46678877654322 12111111 12222 245 666776543 47777754221 11
Q ss_pred eeeeeecccccEEEEEEcCCCCEEEEEcCCC---cEEEeecCccccccee-eeecceeeEEEEecCCEEEEEeCCCcEEE
Q 047728 301 FSQTLLKQECAVTALAISPDAAIVYCGSSDG---LVNFWERELNLSHGGV-LRGHKLAILCLVTAGNLVFSGSADMSICI 376 (474)
Q Consensus 301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~l~sgs~dg~i~i 376 (474)
....+.........+ .-++++.+.|+.++ .+..||.++..-.... .............++.+.+.| |.+.+
T Consensus 345 ~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ 419 (480)
T PHA02790 345 NMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEF 419 (480)
T ss_pred ECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEE
Confidence 112221111111122 22577777777653 4667887655322110 111111122334566666666 35788
Q ss_pred EECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC-----CcEEEEEccCC
Q 047728 377 WRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD-----KSVKMWRVSEQ 434 (474)
Q Consensus 377 wd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D-----g~i~vw~~~~~ 434 (474)
||..+++...+..+....... +++ .-+++ +.+.||.+ ..|..||..+.
T Consensus 420 ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~--------IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 420 YCESSNTWTLIDDPIYPRDNP-ELI-IVDNK--------LLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ecCCCCcEeEcCCCCCCcccc-EEE-EECCE--------EEEECCcCCCcccceEEEEECCCC
Confidence 999888765444443222222 222 23555 77777754 34667776654
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=0.14 Score=53.24 Aligned_cols=102 Identities=19% Similarity=0.311 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCCcEEEeecCccccc--ceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccce
Q 047728 320 DAAIVYCGSSDGLVNFWERELNLSH--GGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPV 397 (474)
Q Consensus 320 ~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v 397 (474)
.+..++.|++.|.+...|....... ...........++++.+|..++.|-.+|.|.+||+..++. +..+..|..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~--l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI--LKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc--eeeeeecCCcc
Confidence 4557888999999999988775432 1122223344566667899999999999999999998773 45666666666
Q ss_pred EEEEEe---eCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 398 KCLAVE---KDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 398 ~~l~~~---~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
+++-+. .++. .++++..-|. +|++.-
T Consensus 176 t~vi~v~~t~~nS--------~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNS--------KLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred ceEEEEEEeCCCc--------EEEEccCCCc--eEEEEe
Confidence 665443 3343 6888877776 676543
No 401
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=0.25 Score=51.79 Aligned_cols=137 Identities=12% Similarity=-0.004 Sum_probs=85.9
Q ss_pred CCeeEEEecCCCCEEEEEE--CCCcEEEEEcCCcceee-----eeee------cCcceeEEEecCCC--eEEEeeCCCcE
Q 047728 221 DAISSLSMSEDQNLLYSAS--WDKTFKVWRTSDYKCLE-----SVIA------HDDAVNSIVAGFDG--LVFTGSADGTV 285 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~-----~~~~------~~~~v~~v~~~~~~--~l~~~~~dg~i 285 (474)
-+|..+...+|+...++.. .+-.|..||+++...-. -+.. ......++.|.|.- ..++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3566666677766554433 34478889987543211 1111 22345677788875 67888899999
Q ss_pred EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc--cccceeeeecceeeEEEEecCC
Q 047728 286 KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN--LSHGGVLRGHKLAILCLVTAGN 363 (474)
Q Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~~v~~~~~~~~ 363 (474)
++..+..... ...........++++|+|.|+.+++|...|++..|..... ..+..........|+|+.|-+.
T Consensus 181 ~V~~~~~~~~------~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 181 RVKSTKQLAQ------NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhh------hhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecc
Confidence 9987764332 1111334567899999999999999999999999976543 1111111112456777777443
No 402
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.93 E-value=2.6 Score=37.70 Aligned_cols=164 Identities=12% Similarity=0.050 Sum_probs=104.9
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeec-CcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH-DDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
-...|.++.|+|+.+.|++......-.++=..+|+.+.++.-. -.....|.+..++ ++++--.++.+.++.+..+...
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 4455999999999999999988888888877889988887532 2234567777777 4445555778888876654321
Q ss_pred ee----eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc--eeeeecc----eee---EEEEe---
Q 047728 297 TK----HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG--GVLRGHK----LAI---LCLVT--- 360 (474)
Q Consensus 297 ~~----~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~----~~v---~~~~~--- 360 (474)
.. ..........+.....++|+|....|+++-+-.-+.||......... .....+. ..+ ..+.+
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~ 243 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAI 243 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCC
Confidence 11 11122222336678899999999988888888778887665332110 1111111 112 22233
Q ss_pred cCCEEEEEeCCCcEEEEECCCC
Q 047728 361 AGNLVFSGSADMSICIWRRKEN 382 (474)
Q Consensus 361 ~~~~l~sgs~dg~i~iwd~~~~ 382 (474)
.+.+|+-+.+++.+.-.|....
T Consensus 244 ~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 244 TNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CCcEEEEecCCceEEEEecCCC
Confidence 3667777778888888887654
No 403
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=1.1 Score=42.29 Aligned_cols=137 Identities=11% Similarity=0.038 Sum_probs=85.3
Q ss_pred eEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc
Q 047728 266 NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG 345 (474)
Q Consensus 266 ~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~ 345 (474)
+.+.|...+..+.+...|.+.=|-...... ..+.......+++|.++.|++|.+.|++--.+..|.+++........
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpnd---DVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPND---DVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCC---CCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 345555444555555666677776553332 11233334456799999999999999999999999999874332222
Q ss_pred e---eeeecceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728 346 G---VLRGHKLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 346 ~---~~~~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
. ..+.....+..|.|. ..-+|.-. +.-+.+|-+..... .+...+.|...|+-..|.++..
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~-~~G~e~y~v~pekr-slRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTEIAFIT-DQGIEFYQVLPEKR-SLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred HHHHHhccCcceeEEEEEecCeeEEEEe-cCCeEEEEEchhhh-hhhhhhhcccCccEEEEccccc
Confidence 2 222233446666663 34444444 33467776654332 2455667888899999999877
No 404
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.74 E-value=2 Score=43.46 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=72.6
Q ss_pred eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe----cCCEEEEEeCCCcEEEEEC
Q 047728 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT----AGNLVFSGSADMSICIWRR 379 (474)
Q Consensus 304 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~sgs~dg~i~iwd~ 379 (474)
.+...-..+.-+.-+.-++..++-+....+.|||.+...............|..+.+ +++.+++.+-.+.|.+|.-
T Consensus 24 ~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 24 TFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333334445555555555555555556679999998775433333344556666554 7889999888999999864
Q ss_pred C-----CC----ceEEEEeecCCc-cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728 380 K-----EN----EHICLSMLTGHS-GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431 (474)
Q Consensus 380 ~-----~~----~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~ 431 (474)
. .. ..+....+..|+ .+|.+..|.++|. |+.|+ ++.+.|++-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~---------LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT---------LVVGS-GNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe---------EEEEe-CCEEEEECC
Confidence 2 11 111122234455 6899999999996 44443 346777764
No 405
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.61 E-value=4.1 Score=38.40 Aligned_cols=180 Identities=10% Similarity=0.089 Sum_probs=86.4
Q ss_pred CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCC----Cc-EEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728 242 KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSAD----GT-VKVWRRELQGKGTKHFFSQTLLKQECAVTAL 315 (474)
Q Consensus 242 g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~d----g~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 315 (474)
..|.-.|+.+|+....+. -...+..+.++|.. .+++-+.. .. -|||-++..+...... .. ......+..=
T Consensus 168 ~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v--~~-~~~~e~~gHE 243 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV--HR-RMEGESVGHE 243 (386)
T ss_dssp EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES--S----TTEEEEEE
T ss_pred ceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee--ec-CCCCcccccc
Confidence 446667888877654443 46677888999987 44433333 22 3788777555432221 11 1223445566
Q ss_pred EEcCCCCEEEEEc-----CCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCC----------------cE
Q 047728 316 AISPDAAIVYCGS-----SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADM----------------SI 374 (474)
Q Consensus 316 ~~~~~~~~l~~~~-----~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg----------------~i 374 (474)
-|.|+|..|.--+ .+..|.-+|+.+.... .........-.-.+++|++++-=+.|. -|
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~-~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i 322 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR-RLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWI 322 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE-EEEEE-SEEEEEE-TTSSEEEEEE-------------------EE
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCce-EEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEE
Confidence 7889988665422 2335666777766432 111111122233345677776544332 46
Q ss_pred EEEECCCCceEEEEee-------cCCcc-ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 375 CIWRRKENEHICLSML-------TGHSG-PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 375 ~iwd~~~~~~~~~~~~-------~~h~~-~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
+++++..++...+... .++.. .=-...|+||++. +|+++...|...||-+.-
T Consensus 323 ~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~-------VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 323 YLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKW-------VLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp EEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSE-------EEEEE-TTSS-EEEEEE-
T ss_pred EEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCE-------EEEECCCCCCccEEEEeC
Confidence 6788877664333221 11111 1245789999885 888999999988886643
No 406
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.46 E-value=1.9 Score=43.60 Aligned_cols=115 Identities=12% Similarity=0.086 Sum_probs=69.1
Q ss_pred eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee-ecCcceeEEEecC--CC-eEEEeeCCCcEEEEEc-----ccC
Q 047728 223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI-AHDDAVNSIVAGF--DG-LVFTGSADGTVKVWRR-----ELQ 293 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~--~~-~l~~~~~dg~i~iwd~-----~~~ 293 (474)
..-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|.++.|.. ++ .+++.+....|.+|-- ...
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3334444444444444455679999998876443322 3478899998864 55 7777788888888842 111
Q ss_pred CCceeeeeeeeeecc-cccEEEEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728 294 GKGTKHFFSQTLLKQ-ECAVTALAISPDAAIVYCGSSDGLVNFWERE 339 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~ 339 (474)
..............+ ..+|.+..|.++|..++.+ ++.+.|+|-.
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 111111111222233 3678999999999877654 3568888743
No 407
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.37 E-value=0.0095 Score=60.07 Aligned_cols=119 Identities=13% Similarity=0.093 Sum_probs=63.6
Q ss_pred CCcEEEEeCCccc---cccccCccCEEEEEec-C--CEEEEEeCCCeEEEEecCCC--CcceeeeecccCccceeeeeec
Q 047728 129 SKNIRVWKNQREF---SGFKSNSGLVKAIVIS-N--EKIFSGHQDGKIRVWKVSSK--DASIHKRVGTLPTFKDFIKCSM 200 (474)
Q Consensus 129 dg~v~vwd~~~~~---~~~~~h~~~V~~i~~~-~--~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~ 200 (474)
.+-|++-+..... ...++..+.|-.+.|. . ..+. -.-|.+.||+++-- +......+...
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~----------- 176 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPI----------- 176 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeec-----------
Confidence 3446776644332 3456667777777775 1 1222 34467889998752 22211111110
Q ss_pred CCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC
Q 047728 201 KPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG 274 (474)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~ 274 (474)
.+.+. .-.-|...-|.++.-++..+-.++.|++....+... ..+..|...+..+++...|
T Consensus 177 ----------~p~gs---~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g 236 (1283)
T KOG1916|consen 177 ----------TPYGS---DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEG 236 (1283)
T ss_pred ----------CcCCC---CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhc
Confidence 00000 012233333334666777777888988877655333 4455688888877766555
No 408
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.36 E-value=3.5 Score=36.64 Aligned_cols=183 Identities=15% Similarity=0.067 Sum_probs=103.3
Q ss_pred eeEEEecCCCCEEEEEECCC--cEEEEEcCCcceeeeeeecC-cceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceee
Q 047728 223 ISSLSMSEDQNLLYSASWDK--TFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKH 299 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 299 (474)
...+.|..++.++-+.+.-| .|+.+|+.+++......-.. -.-..++...+......=.++...+||..+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~---- 122 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKK---- 122 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEE----
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceE----
Confidence 45778877777777887666 68999999998776654322 122344555454555556788899999875432
Q ss_pred eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee-ecceeeE---EEEe-cCCEEEEEeCCCcE
Q 047728 300 FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR-GHKLAIL---CLVT-AGNLVFSGSADMSI 374 (474)
Q Consensus 300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~~v~---~~~~-~~~~l~sgs~dg~i 374 (474)
...+ .....=+.++ .++..|+.......++++|..+......+.. ....++. .+-. +|...|=.-....|
T Consensus 123 --~~~~-~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I 197 (264)
T PF05096_consen 123 --IGTF-PYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRI 197 (264)
T ss_dssp --EEEE-E-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEE
T ss_pred --EEEE-ecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeE
Confidence 1111 1123445555 4567777777778899999876544332221 1222222 2222 45555555566677
Q ss_pred EEEECCCCceEEEEeecC----------C---ccceEEEEEeeCCccccccceEEEEEec
Q 047728 375 CIWRRKENEHICLSMLTG----------H---SGPVKCLAVEKDDESLSREKRWILYSGS 421 (474)
Q Consensus 375 ~iwd~~~~~~~~~~~~~~----------h---~~~v~~l~~~~~~~~~~~~~~~~l~s~s 421 (474)
...|..+++......+.+ + ..-.+.||+.|.... +++||-
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~-------l~vTGK 250 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR-------LFVTGK 250 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE-------EEEEET
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE-------EEEEeC
Confidence 788888887432221110 1 345789999988764 677774
No 409
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.12 E-value=4.7 Score=41.34 Aligned_cols=112 Identities=12% Similarity=0.109 Sum_probs=72.8
Q ss_pred eeEEEecC--CCCEEEEEECCCcEEEEEcCC-------c----c---------eeeeeeecCcceeEEEec--CCC-eEE
Q 047728 223 ISSLSMSE--DQNLLYSASWDKTFKVWRTSD-------Y----K---------CLESVIAHDDAVNSIVAG--FDG-LVF 277 (474)
Q Consensus 223 V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~-------~----~---------~~~~~~~~~~~v~~v~~~--~~~-~l~ 277 (474)
|+-|.... +...|+.|.+||.|.+|.+++ . + +...+. -...++.++++ ... +||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 44444433 567899999999999997631 0 0 111122 24578899987 555 777
Q ss_pred EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC---C---EEEEEcCCCcEEEeec
Q 047728 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA---A---IVYCGSSDGLVNFWER 338 (474)
Q Consensus 278 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---~---~l~~~~~dg~i~v~d~ 338 (474)
+++....|.||-+....... .......+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~---~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERF---YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEecccccc---ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888765431111 111122366779999998743 2 7888899999999887
No 410
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.08 E-value=9.1 Score=40.27 Aligned_cols=202 Identities=8% Similarity=-0.016 Sum_probs=105.6
Q ss_pred CCEEEEEECCCcEEEEEcCCcceeeeeeecCcc--------eeEEEec-----------------CCCeEEEeeCCCcEE
Q 047728 232 QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDA--------VNSIVAG-----------------FDGLVFTGSADGTVK 286 (474)
Q Consensus 232 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~v~~~-----------------~~~~l~~~~~dg~i~ 286 (474)
+..|+.++.++.|.-.|..+|+.+-.+...... .+.+.+. .++.++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567888888899999999999988776542211 1122221 122788899999999
Q ss_pred EEEcccCCCceeee------eeeeeecccccEEEEEEcC--CCCEEEEEcC----------CCcEEEeecCcccccceee
Q 047728 287 VWRRELQGKGTKHF------FSQTLLKQECAVTALAISP--DAAIVYCGSS----------DGLVNFWERELNLSHGGVL 348 (474)
Q Consensus 287 iwd~~~~~~~~~~~------~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~ 348 (474)
-.|.++++...... ...........-..+.-.| .+..+++|+. +|.|+-+|.++++..-...
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99987765421110 0000000000001112222 2345555642 6889999998887654433
Q ss_pred eecc----------------e---eeEEEEecCCEEEEEeC------------------CCcEEEEECCCCceEEEEeec
Q 047728 349 RGHK----------------L---AILCLVTAGNLVFSGSA------------------DMSICIWRRKENEHICLSMLT 391 (474)
Q Consensus 349 ~~~~----------------~---~v~~~~~~~~~l~sgs~------------------dg~i~iwd~~~~~~~~~~~~~ 391 (474)
.+.. . ...++.+...+++.+.. .+.|.-.|.++++..-.....
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 2110 0 11233333334443221 244555666666643222222
Q ss_pred CCccc-------eEEEEEee-CCccccccceEEEEEecCCCcEEEEEccCCCCCC
Q 047728 392 GHSGP-------VKCLAVEK-DDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL 438 (474)
Q Consensus 392 ~h~~~-------v~~l~~~~-~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~ 438 (474)
.|.-. ..-+.+.. +++ .+..++.++.+|.+.+.|-.++++..
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~-----~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGT-----TVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred CCccccccccCCceEEeeecCCCc-----EeeEEEEECCCCEEEEEECCCCCEEe
Confidence 22210 11111111 221 22379999999999999998886543
No 411
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=4.4 Score=36.32 Aligned_cols=275 Identities=12% Similarity=0.114 Sum_probs=152.8
Q ss_pred ecCcEEEEEEcCCEEEEeeCCCcEEEEeCCcc----ccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceee
Q 047728 109 EEGHIYSLAAAGDLLYTGSDSKNIRVWKNQRE----FSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHK 184 (474)
Q Consensus 109 h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~~~----~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 184 (474)
-++-+..+.+.+++.+.+..+.-++|.|...+ +..+-.-.+--.++..+|++...+..|.-+.+.|+.........
T Consensus 85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~la 164 (370)
T COG5276 85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLA 164 (370)
T ss_pred hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceee
Confidence 34556778888999999998888999995532 22222223566778888999999996666888898876543322
Q ss_pred eecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee--eecC
Q 047728 185 RVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV--IAHD 262 (474)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~ 262 (474)
..... ....-..++.+ |++-+.+..|+-+.+.|+........+ ....
T Consensus 165 grya~-----------------------------~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g 213 (370)
T COG5276 165 GRYAL-----------------------------PGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTG 213 (370)
T ss_pred eeecc-----------------------------CCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecC
Confidence 21111 22223455554 678888889999999999765432222 1123
Q ss_pred cceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc
Q 047728 263 DAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL 342 (474)
Q Consensus 263 ~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~ 342 (474)
..+..+..+++..+++- .+--+.+-|........ .+-.........++ .+.-.+++.+....+.-+.+-|+.+..
T Consensus 214 ~g~~sv~vsdnr~y~vv-y~egvlivd~s~~ssp~--~~gsyet~~p~~~s--~v~Vs~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 214 PGTYSVSVSDNRAYLVV-YDEGVLIVDVSGPSSPT--VFGSYETSNPVSIS--TVPVSGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred CceEEEEecCCeeEEEE-cccceEEEecCCCCCce--EeeccccCCccccc--ceecccceeeeeccccCceeEeccCCC
Confidence 36777877766533333 33445555655333211 11111111111222 223346666667777777777776543
Q ss_pred ccceeeeec----ceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEE
Q 047728 343 SHGGVLRGH----KLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY 418 (474)
Q Consensus 343 ~~~~~~~~~----~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~ 418 (474)
.. ++..+ ......+...+.++..+..+ ...+-+....+. .....+....+.+.+.+-+.+ ++.
T Consensus 289 sp--fl~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~s~--m~~~~g~~ti~~s~~v~~~~q--------~~y 355 (370)
T COG5276 289 SP--FLSSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPPSM--MDKRPGRPTIGQSCDVSVDTQ--------IIY 355 (370)
T ss_pred CC--chhccccCCCccccceEEecCeeEeccCC-ceEEEeCCChhh--cccccCcceEeeecceEEEee--------EEE
Confidence 22 11111 11223444456666666554 444555543321 112222223344444444555 788
Q ss_pred EecCCCcEEEEEcc
Q 047728 419 SGSLDKSVKMWRVS 432 (474)
Q Consensus 419 s~s~Dg~i~vw~~~ 432 (474)
+...++-+.||+..
T Consensus 356 ~~d~~~gl~i~~~~ 369 (370)
T COG5276 356 STDYNGGLSIIEYL 369 (370)
T ss_pred EeecCCCEEEEEec
Confidence 88889999999863
No 412
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.95 E-value=8.2 Score=39.29 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=37.8
Q ss_pred cEEEEe-CCccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCC
Q 047728 131 NIRVWK-NQREFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKD 179 (474)
Q Consensus 131 ~v~vwd-~~~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~ 179 (474)
.|+|++ .++.+.......+.+..+.|+ ...|+....||++++|++-...
T Consensus 65 ~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 65 YIRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred eEEEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhh
Confidence 377777 445565555555588899999 6789999999999999987654
No 413
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.93 E-value=3.6 Score=36.64 Aligned_cols=259 Identities=14% Similarity=0.116 Sum_probs=129.4
Q ss_pred EcCC-EEEEeeCCCcEEEE-eCCccccccccCccCEEEEEecCCEEEEEeCCCe-EEEEecCCCCcceeeeecccCccce
Q 047728 118 AAGD-LLYTGSDSKNIRVW-KNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGK-IRVWKVSSKDASIHKRVGTLPTFKD 194 (474)
Q Consensus 118 ~~~~-~l~tgs~dg~v~vw-d~~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~ 194 (474)
.+|. .+++.+.+|.+.-= .+...-..+.-|...-.+ ++.+-.-|+ ..++|.+..+......
T Consensus 45 ~dgs~g~a~~~eaGk~v~~~~lpaR~Hgi~~~p~~~ra-------vafARrPGtf~~vfD~~~~~~pv~~~--------- 108 (366)
T COG3490 45 RDGSFGAATLSEAGKIVFATALPARGHGIAFHPALPRA-------VAFARRPGTFAMVFDPNGAQEPVTLV--------- 108 (366)
T ss_pred cCCceeEEEEccCCceeeeeecccccCCeecCCCCcce-------EEEEecCCceEEEECCCCCcCcEEEe---------
Confidence 3455 46667777765432 122222222223333333 333444443 3567777765543221
Q ss_pred eeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC-----CcEEEEEcCC-cceeeeeeecCcceeEE
Q 047728 195 FIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD-----KTFKVWRTSD-YKCLESVIAHDDAVNSI 268 (474)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~-~~~~~~~~~~~~~v~~v 268 (474)
..+...|.+|. .|+|||.+|+..-.| |.|-|||.+. .+.+..+..|.-....+
T Consensus 109 ---------------s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev 167 (366)
T COG3490 109 ---------------SQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEV 167 (366)
T ss_pred ---------------cccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCccee
Confidence 12223455664 589999999876543 7799999874 34566777888778889
Q ss_pred EecCCCeEEEeeCCCcEEEE--------------------EcccCCCceeeeeeeeee--cccccEEEEEEcCCCCEEEE
Q 047728 269 VAGFDGLVFTGSADGTVKVW--------------------RRELQGKGTKHFFSQTLL--KQECAVTALAISPDAAIVYC 326 (474)
Q Consensus 269 ~~~~~~~l~~~~~dg~i~iw--------------------d~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~ 326 (474)
.+.+||.+++... |-|..- |..++.... +.++. .+.-.|..++..+++..++.
T Consensus 168 ~lm~DGrtlvvan-GGIethpdfgR~~lNldsMePSlvlld~atG~lie----kh~Lp~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 168 TLMADGRTLVVAN-GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE----KHTLPASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred EEecCCcEEEEeC-CceecccccCccccchhhcCccEEEEeccccchhh----hccCchhhhhcceeeeeeCCCCcEEEE
Confidence 9999993333222 222222 222111111 11111 34456888888888877665
Q ss_pred EcCCCcEEEe----e-cCcccccceeee--------ecceeeEEEEecCCEEE-EEeCCCcEEEEECCCCceEEEEeecC
Q 047728 327 GSSDGLVNFW----E-RELNLSHGGVLR--------GHKLAILCLVTAGNLVF-SGSADMSICIWRRKENEHICLSMLTG 392 (474)
Q Consensus 327 ~~~dg~i~v~----d-~~~~~~~~~~~~--------~~~~~v~~~~~~~~~l~-sgs~dg~i~iwd~~~~~~~~~~~~~~ 392 (474)
+-..|.-.=+ - ...++.+..+.. .+-...++..-+..+++ +.=..+...+||..++.......+..
T Consensus 243 cQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d 322 (366)
T COG3490 243 CQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD 322 (366)
T ss_pred EEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc
Confidence 4333211000 0 000111100000 11111233333344444 44456678899999998443222221
Q ss_pred CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 393 h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
+..++- ... -++..+.+|.|.++.-.
T Consensus 323 ----aaGva~--~~~--------gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 323 ----AAGVAA--AKG--------GFAVSSGQGRIIFYSRA 348 (366)
T ss_pred ----ccccee--ccC--------ceEEecCCceEEecccc
Confidence 222333 222 35566678888887433
No 414
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.91 E-value=1 Score=47.58 Aligned_cols=145 Identities=11% Similarity=-0.040 Sum_probs=86.3
Q ss_pred cceeEEEecCCC---eEEEeeCCCcEEEEEcccCCCceeee-----eeeeeecccccEEEEEEcCCC-CEEEEEcCCCcE
Q 047728 263 DAVNSIVAGFDG---LVFTGSADGTVKVWRRELQGKGTKHF-----FSQTLLKQECAVTALAISPDA-AIVYCGSSDGLV 333 (474)
Q Consensus 263 ~~v~~v~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i 333 (474)
-++..+...+|. .++..+.+-.|..||++.-....... ..........-..++.|+|.- ...++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 355666666776 33334445578999987543221111 011122233445677888843 345667788889
Q ss_pred EEeecCccccccee-eeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC-CccceEEEEEeeCCc
Q 047728 334 NFWERELNLSHGGV-LRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG-HSGPVKCLAVEKDDE 407 (474)
Q Consensus 334 ~v~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~ 407 (474)
++..+......... ........++|++.|+.++.|-..|++.-|...-.....+..... ....|.+|+|.....
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEeccee
Confidence 88876544332222 334455668888899999999999999998765432111111111 146799999987765
No 415
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.89 E-value=4.1 Score=40.19 Aligned_cols=119 Identities=14% Similarity=0.134 Sum_probs=72.5
Q ss_pred eeccCCeeEEEecCC----CCEEEEEECCCcEEEEEcC-----Ccceeeeeeec-Cc----ceeEEEecCCC-eEEEeeC
Q 047728 217 IKHFDAISSLSMSED----QNLLYSASWDKTFKVWRTS-----DYKCLESVIAH-DD----AVNSIVAGFDG-LVFTGSA 281 (474)
Q Consensus 217 ~~h~~~V~~l~~~~~----~~~l~s~s~dg~i~iwd~~-----~~~~~~~~~~~-~~----~v~~v~~~~~~-~l~~~~~ 281 (474)
.|...-|..+.|.|- ...|++......|.+|-+. +.+.+.....+ .. -...+.|+|.. .|++-..
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~ 132 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA 132 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence 346667999999983 3356666778899999875 22322222111 11 22456799988 4444444
Q ss_pred CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCc
Q 047728 282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWEREL 340 (474)
Q Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~ 340 (474)
...-.+++++.... ....-....+.|.|.+|.+||+.|+++- ..=.-++||-..
T Consensus 133 ~dvSV~~sV~~d~s-----rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 133 RDVSVLPSVHCDSS-----RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CceeEeeeeeeCCc-----eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 44444555554332 1233345677899999999999877653 333467898543
No 416
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.87 E-value=9.9 Score=39.96 Aligned_cols=240 Identities=9% Similarity=0.029 Sum_probs=117.8
Q ss_pred cEEEEeCCccccccccCccCEEEEEe-cCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEe
Q 047728 131 NIRVWKNQREFSGFKSNSGLVKAIVI-SNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVR 209 (474)
Q Consensus 131 ~v~vwd~~~~~~~~~~h~~~V~~i~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (474)
.||+++.......+..-.+.....++ +...++.++.++.+...+++.........
T Consensus 471 ~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~------------------------ 526 (1096)
T KOG1897|consen 471 SIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSH------------------------ 526 (1096)
T ss_pred cEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeee------------------------
Confidence 36776654344444433333333333 34577777777777776766554211100
Q ss_pred eeccceeeeccCCeeEEEecCC---CC---EEEEEECCCcEEEEEcC-Ccceeeee--ee--cCcceeEEEecCCC-eEE
Q 047728 210 RHRNGLWIKHFDAISSLSMSED---QN---LLYSASWDKTFKVWRTS-DYKCLESV--IA--HDDAVNSIVAGFDG-LVF 277 (474)
Q Consensus 210 ~~~~~~~~~h~~~V~~l~~~~~---~~---~l~s~s~dg~i~iwd~~-~~~~~~~~--~~--~~~~v~~v~~~~~~-~l~ 277 (474)
..-...|.|+.++|- .+ +++.|.++..+.+.-.. +...+... .. -...|....+-.|. +|+
T Consensus 527 -------~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLl 599 (1096)
T KOG1897|consen 527 -------KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLL 599 (1096)
T ss_pred -------heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEE
Confidence 114567999999973 23 78889888877665432 22222211 11 12233334444444 899
Q ss_pred EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE
Q 047728 278 TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC 357 (474)
Q Consensus 278 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~ 357 (474)
++..||.+..|-+....-.. .......-...++.--.|+..++.-+.+..|.-..+|..+........-...-..+..
T Consensus 600 valgdG~l~~fv~d~~tg~l--sd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~ 677 (1096)
T KOG1897|consen 600 VALGDGALLYFVLDINTGQL--SDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCP 677 (1096)
T ss_pred EEcCCceEEEEEEEcccceE--ccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcc
Confidence 99999999887665332110 0011111223344444565554444444555555555544332221111111112222
Q ss_pred EEec--CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728 358 LVTA--GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405 (474)
Q Consensus 358 ~~~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~ 405 (474)
++.+ ...|+++. .+.+++.-++.-+...+.++.-+ .....+++.+.
T Consensus 678 f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~ 725 (1096)
T KOG1897|consen 678 FNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQES 725 (1096)
T ss_pred cccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CChhheEeccc
Confidence 3322 34455544 45677776655443334444333 34566666653
No 417
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.73 E-value=0.024 Score=53.52 Aligned_cols=139 Identities=13% Similarity=0.151 Sum_probs=99.6
Q ss_pred EcCCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CC-EEEEEeCCCeEEEEecCCCCcceeeeecccCccce
Q 047728 118 AAGDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NE-KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKD 194 (474)
Q Consensus 118 ~~~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 194 (474)
+.+.-++.++.+..|..||.......-..-++....++|+ ++ .++.+...+.+.+|++.+........-+
T Consensus 44 ~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg------- 116 (615)
T KOG2247|consen 44 PEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG------- 116 (615)
T ss_pred cCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC-------
Confidence 4455578888888899998655544444445566677787 33 5666778889999999876432211100
Q ss_pred eeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC
Q 047728 195 FIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG 274 (474)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~ 274 (474)
.|.... +.|++....++.+...+.+.|++..+.+.+...-.|...+.++++.+.+
T Consensus 117 -----------------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 117 -----------------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred -----------------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence 022222 6788888888889899999999988877777666689999999999999
Q ss_pred eEEEeeCCCcEEEE
Q 047728 275 LVFTGSADGTVKVW 288 (474)
Q Consensus 275 ~l~~~~~dg~i~iw 288 (474)
+.+.++.|..+.+-
T Consensus 172 ~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 172 YVILCDCDNTLSVT 185 (615)
T ss_pred eeeecCcHHHHHHh
Confidence 88888888766544
No 418
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.62 E-value=7.5 Score=37.78 Aligned_cols=200 Identities=13% Similarity=0.092 Sum_probs=95.8
Q ss_pred EEEecCCCCEEEEEECCC-----------cEEEEEcCCccee--eeeeecCcc--eeEEEecCCC-eEE-EeeCC---Cc
Q 047728 225 SLSMSEDQNLLYSASWDK-----------TFKVWRTSDYKCL--ESVIAHDDA--VNSIVAGFDG-LVF-TGSAD---GT 284 (474)
Q Consensus 225 ~l~~~~~~~~l~s~s~dg-----------~i~iwd~~~~~~~--~~~~~~~~~--v~~v~~~~~~-~l~-~~~~d---g~ 284 (474)
.+.|.++++.|+....+. .|+.|.+.+...- ..+...... ...+..++++ .++ ..... ..
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 389999988777665433 3788888765432 333333333 4577888888 333 33333 34
Q ss_pred EEEEEcccCCCceeeeeeeeeecccccEE-EEEEcCCCCEEEEEc---CCCcEEEeecCcccc--cceeeeecce--eeE
Q 047728 285 VKVWRRELQGKGTKHFFSQTLLKQECAVT-ALAISPDAAIVYCGS---SDGLVNFWERELNLS--HGGVLRGHKL--AIL 356 (474)
Q Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~~~~---~dg~i~v~d~~~~~~--~~~~~~~~~~--~v~ 356 (474)
+.+.|+...... .. ....+......+. .+... .+.+++... ..+.|...++..... ....+..+.. .+.
T Consensus 254 v~~~d~~~~~~~-~~-~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~ 330 (414)
T PF02897_consen 254 VYLLDLDDGGSP-DA-KPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLE 330 (414)
T ss_dssp EEEEECCCTTTS-S--SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEE
T ss_pred EEEEeccccCCC-cC-CcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEE
Confidence 666676643100 00 1122222222333 33333 443444332 235666677766542 1223444433 566
Q ss_pred EEEecCCEEEEEe-CCC--cEEEEECC-CCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC--CCcEEEEE
Q 047728 357 CLVTAGNLVFSGS-ADM--SICIWRRK-ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL--DKSVKMWR 430 (474)
Q Consensus 357 ~~~~~~~~l~sgs-~dg--~i~iwd~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~--Dg~i~vw~ 430 (474)
.+...+++|+... .++ .|+++++. +.... ...+.. .+.|..+...++... .++...|. -++|..||
T Consensus 331 ~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~-~~~~p~-~g~v~~~~~~~~~~~------~~~~~ss~~~P~~~y~~d 402 (414)
T PF02897_consen 331 DVSLFKDYLVLSYRENGSSRLRVYDLDDGKESR-EIPLPE-AGSVSGVSGDFDSDE------LRFSYSSFTTPPTVYRYD 402 (414)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEETT-TEEEE-EEESSS-SSEEEEEES-TT-SE------EEEEEEETTEEEEEEEEE
T ss_pred EEEEECCEEEEEEEECCccEEEEEECCCCcEEe-eecCCc-ceEEeccCCCCCCCE------EEEEEeCCCCCCEEEEEE
Confidence 6776666655544 443 57888888 44322 222222 344555544444432 12333332 34677777
Q ss_pred ccCCC
Q 047728 431 VSEQA 435 (474)
Q Consensus 431 ~~~~~ 435 (474)
+.+++
T Consensus 403 ~~t~~ 407 (414)
T PF02897_consen 403 LATGE 407 (414)
T ss_dssp TTTTC
T ss_pred CCCCC
Confidence 77764
No 419
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.61 E-value=7.2 Score=37.55 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=53.9
Q ss_pred cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe----cC----------------C-EE
Q 047728 307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT----AG----------------N-LV 365 (474)
Q Consensus 307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~----~~----------------~-~l 365 (474)
.....+.+++.+|.+++.++...-|.|.++|+.+...+ +..++....-+.|-. .. . ++
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv-rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV-RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh-hhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 34456899999999999999888899999999887554 455555544333321 11 1 23
Q ss_pred EEEeCCCcEEEEECCCCceE
Q 047728 366 FSGSADMSICIWRRKENEHI 385 (474)
Q Consensus 366 ~sgs~dg~i~iwd~~~~~~~ 385 (474)
+-+-.-|.|.||.++.+..+
T Consensus 384 IyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EEeccCCeEEEEecCCCCEE
Confidence 33446788999999888744
No 420
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=93.50 E-value=8.4 Score=37.94 Aligned_cols=266 Identities=16% Similarity=0.150 Sum_probs=125.7
Q ss_pred cCcEEEEEEc-CCEEEEeeCCCcEEEEeCCc--ccccccc-CccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceee
Q 047728 110 EGHIYSLAAA-GDLLYTGSDSKNIRVWKNQR--EFSGFKS-NSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHK 184 (474)
Q Consensus 110 ~~~i~~~~~~-~~~l~tgs~dg~v~vwd~~~--~~~~~~~-h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~ 184 (474)
...|.++.++ ...|..|+.|| +..||..+ .+..-.. ...+|..+..+ ...|..|+.+| |.+.+.+........
T Consensus 164 d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~sn~~ 241 (671)
T COG3292 164 DTPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWRASNWG 241 (671)
T ss_pred CccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhccccccC
Confidence 3457788887 55788888888 45555332 1221111 12556666666 77899999998 777776652221100
Q ss_pred eecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce-eeeeeec--
Q 047728 185 RVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC-LESVIAH-- 261 (474)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~-- 261 (474)
. .+ ....|..+.-..+| .+-.|+.+|..+. ....... +...+.|
T Consensus 242 ~--~l-----------------------------p~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~ 288 (671)
T COG3292 242 P--ML-----------------------------PSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMHLG 288 (671)
T ss_pred C--CC-----------------------------cchheeeeecccCC-CEEEeecccceeE-ecCCCCccccccccCCc
Confidence 0 00 12223333322233 4556666664432 3332222 2222222
Q ss_pred CcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc-cccEEEEEEcC--CCCEEEEEcCCCcEEEeec
Q 047728 262 DDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ-ECAVTALAISP--DAAIVYCGSSDGLVNFWER 338 (474)
Q Consensus 262 ~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~--~~~~l~~~~~dg~i~v~d~ 338 (474)
-..|..+-...+|.+-+++.+|.+++-+-.-.. ....... ...+..++..| .+..+-...+-|.+.+-+-
T Consensus 289 ~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~-------ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~ 361 (671)
T COG3292 289 VSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKR-------MAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANG 361 (671)
T ss_pred cccccceeeccCCCEeeeccCceEEEecchhhh-------eeeeecCCCchhhhhccCchhcccceeeccccceEEEecC
Confidence 245666666667788888888888775432110 0001111 01111111111 1111111112222222222
Q ss_pred Ccccccceee--eecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee-cCCccceEEEEEeeCCccccccceE
Q 047728 339 ELNLSHGGVL--RGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML-TGHSGPVKCLAVEKDDESLSREKRW 415 (474)
Q Consensus 339 ~~~~~~~~~~--~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~~~ 415 (474)
.++....... ++.....+++.. +..+..|+...-+..|+.++.-.. .... ..-.++|..+.=.|+++
T Consensus 362 stG~~v~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~av-lde~agl~ss~V~aived~dns-------- 431 (671)
T COG3292 362 STGELVRSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAV-LDEDAGLPSSEVSAIVEDPDNS-------- 431 (671)
T ss_pred CCCcEEEEeeeccccccchhhhcc-CCcEEEEecccchhhhccCCcccc-cccccCCcccceeeeeecCCCC--------
Confidence 2222221111 122222233333 556666776655666766552111 1111 12346788888888886
Q ss_pred EEEEecCCCcEEE
Q 047728 416 ILYSGSLDKSVKM 428 (474)
Q Consensus 416 ~l~s~s~Dg~i~v 428 (474)
|..|+.+|.++.
T Consensus 432 -LWIGTs~Glvk~ 443 (671)
T COG3292 432 -LWIGTSGGLVKR 443 (671)
T ss_pred -EEEeccCCeEec
Confidence 778888886553
No 421
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.45 E-value=0.38 Score=29.15 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=27.1
Q ss_pred ccEEEEEEcCCC---CEEEEEcCCCcEEEeecCcccc
Q 047728 310 CAVTALAISPDA---AIVYCGSSDGLVNFWERELNLS 343 (474)
Q Consensus 310 ~~v~~l~~~~~~---~~l~~~~~dg~i~v~d~~~~~~ 343 (474)
+.+.++.|+|+. .+|+.+-.-|.|.++|+++...
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~ 37 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFM 37 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCcc
Confidence 368899999844 4888888889999999996443
No 422
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.08 E-value=4.5 Score=42.08 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=21.4
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWRT 249 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~ 249 (474)
.|..|.++++|++|+..|..| |.|..+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 688999999999999988766 444444
No 423
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=93.04 E-value=2.1 Score=40.18 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=72.0
Q ss_pred CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728 158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS 237 (474)
Q Consensus 158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 237 (474)
++.+..-+..+.|-+|+..+++........... ....-.-+.|.+...+++.
T Consensus 235 ~~~l~~~s~~~~Igvw~~~t~q~~d~~~~s~~d----------------------------sag~~~kL~w~ng~~~li~ 286 (465)
T KOG2714|consen 235 GTQLVALSSVGKIGVWHAVTQQAQDVQPISSYD----------------------------SAGSFLKLGWLNGSNLLID 286 (465)
T ss_pred hhhhhhccccccccccchhhhceeeeeeccCcc----------------------------ccCChhhhccccCceeEEE
Confidence 455666677788999998887443222222110 1222334455543333332
Q ss_pred E-------ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc
Q 047728 238 A-------SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC 310 (474)
Q Consensus 238 ~-------s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 310 (474)
. ..++.|++||.++.. +...|. .++.++..+.+++-+...............+..|..
T Consensus 287 ~~~fp~~~kdN~~i~~~d~Rd~n------------~~~~W~---~i~~gt~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~ 351 (465)
T KOG2714|consen 287 SQKFPLRMKDNDLIVTEDFRDRN------------TSGNWI---EIAYGTSSGEVRVIDQHPETVGVGPCLFQTFEVHGS 351 (465)
T ss_pred EeeccccccCCceEEEeeccCCC------------ccceEE---EecCCccccceEeeeccccccCCCCeEEEEEEecCC
Confidence 2 356788999988755 112232 456677777788777554433333334445555554
Q ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEeecCccc
Q 047728 311 AVTALAISPDAAIVYCGSSDGLVNFWERELNL 342 (474)
Q Consensus 311 ~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~ 342 (474)
+.. ++=.+...+.+++|......
T Consensus 352 ~L~---------~idv~~~~~~~~~~~~tr~r 374 (465)
T KOG2714|consen 352 PLG---------LIDVCSDGGHVRVWNSTRFR 374 (465)
T ss_pred Ccc---------eeehhhhCCcceEEeecccc
Confidence 421 23334455678888876543
No 424
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.89 E-value=9 Score=36.60 Aligned_cols=146 Identities=18% Similarity=0.126 Sum_probs=76.5
Q ss_pred CCCEEEEEECCCcEEEEEcCCcceeeeeeecC-cceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeee--eeec
Q 047728 231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQ--TLLK 307 (474)
Q Consensus 231 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~ 307 (474)
+|+ |+.++.++.+..+|.++++.+....... -.+..-....++.++.++.++.+...|..++.......... ....
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~ 189 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI 189 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence 554 8888899999999998999888876655 11222223334556666577887777766544321111110 1111
Q ss_pred ccccEEEEEEcCCCCEEEEEcC--CCcEEEeecCcccccceeeeecceee-----------EEEEecCCEEEEEeCCCcE
Q 047728 308 QECAVTALAISPDAAIVYCGSS--DGLVNFWERELNLSHGGVLRGHKLAI-----------LCLVTAGNLVFSGSADMSI 374 (474)
Q Consensus 308 ~~~~v~~l~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~~v-----------~~~~~~~~~l~sgs~dg~i 374 (474)
...++ .....++.+.. ++.+.-+|.+++.........+.... -.+. .+.-++.++.++.+
T Consensus 190 ~~~~~------~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~~~~~~~~g~~ 262 (370)
T COG1520 190 YGSPA------IASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVY-VDGGVYAGSYGGKL 262 (370)
T ss_pred ccCce------eecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEE-ECCcEEEEecCCeE
Confidence 11111 12334444444 55566666665544333211111111 0111 13334667777878
Q ss_pred EEEECCCCce
Q 047728 375 CIWRRKENEH 384 (474)
Q Consensus 375 ~iwd~~~~~~ 384 (474)
...|..+++.
T Consensus 263 ~~l~~~~G~~ 272 (370)
T COG1520 263 LCLDADTGEL 272 (370)
T ss_pred EEEEcCCCce
Confidence 8888888874
No 425
>PLN02153 epithiospecifier protein
Probab=92.72 E-value=9 Score=36.13 Aligned_cols=55 Identities=7% Similarity=-0.052 Sum_probs=29.7
Q ss_pred CcEEEeecCcccccceee----eecceeeEEEEecCCEEEEEeCC--------------CcEEEEECCCCceE
Q 047728 331 GLVNFWERELNLSHGGVL----RGHKLAILCLVTAGNLVFSGSAD--------------MSICIWRRKENEHI 385 (474)
Q Consensus 331 g~i~v~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~l~sgs~d--------------g~i~iwd~~~~~~~ 385 (474)
..+.+||+.+..-..... ........+...++.+++.|+.. +.+..||..+.+..
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 458888887653221110 11112223344567777777742 25778888777644
No 426
>PHA02790 Kelch-like protein; Provisional
Probab=92.57 E-value=8.9 Score=38.16 Aligned_cols=143 Identities=9% Similarity=0.070 Sum_probs=67.8
Q ss_pred CCCEEEEEECC--CcEEEEEcCCcceee--eeeecCcceeEEEecCCC-eEEEeeCCC---cEEEEEcccCCCceeeeee
Q 047728 231 DQNLLYSASWD--KTFKVWRTSDYKCLE--SVIAHDDAVNSIVAGFDG-LVFTGSADG---TVKVWRRELQGKGTKHFFS 302 (474)
Q Consensus 231 ~~~~l~s~s~d--g~i~iwd~~~~~~~~--~~~~~~~~v~~v~~~~~~-~l~~~~~dg---~i~iwd~~~~~~~~~~~~~ 302 (474)
++...+.|+.+ ..+..||..+.+-.. .+.. ...-.+++.. ++ ..+.|+.++ .+..||.+... ....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~-~r~~~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~----W~~~ 391 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK-PRCNPAVASI-NNVIYVIGGHSETDTTTEYLLPNHDQ----WQFG 391 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCC-CCcccEEEEE-CCEEEEecCcCCCCccEEEEeCCCCE----EEeC
Confidence 56666677653 357778876543221 1211 1111122322 45 666676553 46677765321 1111
Q ss_pred eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEEeCC-----CcEEE
Q 047728 303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSGSAD-----MSICI 376 (474)
Q Consensus 303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sgs~d-----g~i~i 376 (474)
.......... +++ .-++.+.+.| |.+.+||.++..-... .........-+...++++.+.|+.+ ..+..
T Consensus 392 ~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~ 466 (480)
T PHA02790 392 PSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEV 466 (480)
T ss_pred CCCCCccccc-eEE-EECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEE
Confidence 1111111111 121 2245556655 3577888876532211 1111122223344577788888754 35778
Q ss_pred EECCCCce
Q 047728 377 WRRKENEH 384 (474)
Q Consensus 377 wd~~~~~~ 384 (474)
||..+++.
T Consensus 467 Yd~~~~~W 474 (480)
T PHA02790 467 YNNRTYSW 474 (480)
T ss_pred EECCCCeE
Confidence 88877664
No 427
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.52 E-value=0.7 Score=28.04 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=25.8
Q ss_pred CCeeEEEecCCC---CEEEEEECCCcEEEEEcCC
Q 047728 221 DAISSLSMSEDQ---NLLYSASWDKTFKVWRTSD 251 (474)
Q Consensus 221 ~~V~~l~~~~~~---~~l~s~s~dg~i~iwd~~~ 251 (474)
++|.++.|+|+. .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999843 5888888889999999985
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.44 E-value=16 Score=38.23 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=27.9
Q ss_pred ccCCeeEEEecCC---CCEEEEEECCCcEEEEEcCCcc
Q 047728 219 HFDAISSLSMSED---QNLLYSASWDKTFKVWRTSDYK 253 (474)
Q Consensus 219 h~~~V~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~~ 253 (474)
+...|..+.|+|. +..|+.=+.|+++++||+....
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 3446778899984 5889899999999999997543
No 429
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.23 E-value=11 Score=36.09 Aligned_cols=194 Identities=13% Similarity=0.139 Sum_probs=86.7
Q ss_pred CCCEEEEEE-CCCcEEEEEcCC----cceeeeeee---cC----cceeEEEecCCC-eEEEe--eCC----CcEEEEEcc
Q 047728 231 DQNLLYSAS-WDKTFKVWRTSD----YKCLESVIA---HD----DAVNSIVAGFDG-LVFTG--SAD----GTVKVWRRE 291 (474)
Q Consensus 231 ~~~~l~s~s-~dg~i~iwd~~~----~~~~~~~~~---~~----~~v~~v~~~~~~-~l~~~--~~d----g~i~iwd~~ 291 (474)
+.++|+..+ ..+.|+|+|+.+ .+..+.+.. +. .....+...|+| .++++ ..+ |-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456676666 778999999973 334444432 11 223344556777 55553 222 346666654
Q ss_pred cCCCceeeeeeeeee---cccccEEEEEEcCCCCEEEEEcC--------------------CCcEEEeecCcccccceee
Q 047728 292 LQGKGTKHFFSQTLL---KQECAVTALAISPDAAIVYCGSS--------------------DGLVNFWERELNLSHGGVL 348 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~--------------------dg~i~v~d~~~~~~~~~~~ 348 (474)
+... ..... .....-..+-+.|..+.+++..- ..++.+||+.+.+..+.+-
T Consensus 166 tf~v------~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id 239 (461)
T PF05694_consen 166 TFEV------KGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID 239 (461)
T ss_dssp T--E------EEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE
T ss_pred cccc------cceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe
Confidence 3221 11111 11233556777888787777532 3579999999887776655
Q ss_pred eeccee-eEEEEe----cCCEEEEEe-CCCcEEEEEC-CCCceEE--EEeecCC-----------------ccceEEEEE
Q 047728 349 RGHKLA-ILCLVT----AGNLVFSGS-ADMSICIWRR-KENEHIC--LSMLTGH-----------------SGPVKCLAV 402 (474)
Q Consensus 349 ~~~~~~-v~~~~~----~~~~l~sgs-~dg~i~iwd~-~~~~~~~--~~~~~~h-----------------~~~v~~l~~ 402 (474)
.+.... .+.+.+ +..+-++|+ -..+|..|-. ..++... +..+..- ..-|++|.+
T Consensus 240 Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 240 LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 554332 334433 334433333 3444544433 4443322 1222111 234799999
Q ss_pred eeCCccccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728 403 EKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP 437 (474)
Q Consensus 403 ~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~ 437 (474)
+.|++. +.+++=.+|.|+.||++....+
T Consensus 320 SlDDrf-------LYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 320 SLDDRF-------LYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp -TTS-E-------EEEEETTTTEEEEEE-SSTTS-
T ss_pred ccCCCE-------EEEEcccCCcEEEEecCCCCCC
Confidence 999883 4556668999999999987555
No 430
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=5.3 Score=43.35 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=43.4
Q ss_pred ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCce
Q 047728 308 QECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEH 384 (474)
Q Consensus 308 ~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~ 384 (474)
+..++.+..+......+. +...+.+..|+.............+... ..++..++++..||.+.+||...++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILI-GFNRGLVVIKDRASKYVQSAYLPNGQLE----SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccceeeeecCCCcce-eeeeeeeeehhcccccchhhcccccccC----ccCCceEEEEEecCCEEeeecCCCce
Confidence 344455555444444333 4445666666655443333232222222 77899999999999999999988753
No 431
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.92 E-value=5 Score=41.16 Aligned_cols=120 Identities=12% Similarity=0.090 Sum_probs=73.5
Q ss_pred cEEEEEEcC--CCCEEEEEcCCCcEEEeecCccc--------------------ccceeeeecceeeEEEE--ecCCEEE
Q 047728 311 AVTALAISP--DAAIVYCGSSDGLVNFWERELNL--------------------SHGGVLRGHKLAILCLV--TAGNLVF 366 (474)
Q Consensus 311 ~v~~l~~~~--~~~~l~~~~~dg~i~v~d~~~~~--------------------~~~~~~~~~~~~v~~~~--~~~~~l~ 366 (474)
.|+.|.+.. +...|+++..||.|.+|..+.-. .......+...+-+++. ...++||
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 355555444 56688999999999999642110 00111112333345554 4477888
Q ss_pred EEeCCCcEEEEECCCC-ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 367 SGSADMSICIWRRKEN-EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 367 sgs~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
+++....|.||-.... +......-..|...|-+|+|.++.... .+...|++++-.|.+.+|++.
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~--~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDP--NGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCC--ccceEEEEEeccCcEEEEEEE
Confidence 8888888888866432 111111112356679999999886421 111478889999999999883
No 432
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.89 E-value=3.7 Score=39.62 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=85.1
Q ss_pred CCCEEE-EEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--------eEEEeeCCCcEEEEEcccCCCceeeee
Q 047728 231 DQNLLY-SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--------LVFTGSADGTVKVWRRELQGKGTKHFF 301 (474)
Q Consensus 231 ~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--------~l~~~~~dg~i~iwd~~~~~~~~~~~~ 301 (474)
+..+|+ .|+....++-.|++.|+.+.....|..- -+.+.|.. .-++|-++..|.-.|.+..+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~--- 552 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK--- 552 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee---
Confidence 334443 4455566777899999999999887765 46677653 355677777777777775553111
Q ss_pred eeeeecccccEEEEEEcC----CCCEEEEEcCCCcEEEeecCcccccceeeee--cceeeEEEEecCCEEEEEeCCCcEE
Q 047728 302 SQTLLKQECAVTALAISP----DAAIVYCGSSDGLVNFWERELNLSHGGVLRG--HKLAILCLVTAGNLVFSGSADMSIC 375 (474)
Q Consensus 302 ~~~~~~~~~~v~~l~~~~----~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~sgs~dg~i~ 375 (474)
.......++.-.|+. ...++++++..|.|++||.-..... ..+.+ ....-+.++.+|+++++.+ ...+.
T Consensus 553 ---v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAK-talP~lG~aIk~idvta~Gk~ilaTC-k~yll 627 (776)
T COG5167 553 ---VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAK-TALPGLGDAIKHIDVTANGKHILATC-KNYLL 627 (776)
T ss_pred ---eeeehhccccccccccccccCceEEEecCCCceeeehhhcchhh-hcCcccccceeeeEeecCCcEEEEee-cceEE
Confidence 111122222223332 4568999999999999996433222 22222 2233356677888877666 44677
Q ss_pred EEECC
Q 047728 376 IWRRK 380 (474)
Q Consensus 376 iwd~~ 380 (474)
+-|+.
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 77764
No 433
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.86 E-value=1 Score=39.30 Aligned_cols=64 Identities=11% Similarity=0.166 Sum_probs=47.2
Q ss_pred ecCCCCEEEEEECCCcEEEEEcCCcceeeee-------e-------ecCcceeEEEecCCCeEEEeeCCCcEEEEEcc
Q 047728 228 MSEDQNLLYSASWDKTFKVWRTSDYKCLESV-------I-------AHDDAVNSIVAGFDGLVFTGSADGTVKVWRRE 291 (474)
Q Consensus 228 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~ 291 (474)
+..++++|++.+.+|.+++||+.+++.+..- . .....|..+.+..+|..++.-.+|....|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 3446789999999999999999988765432 1 24467788888888844444566888888865
No 434
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.81 E-value=7.2 Score=37.16 Aligned_cols=171 Identities=11% Similarity=0.102 Sum_probs=95.3
Q ss_pred eeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeec-ccccEE-EEEEcCCCCEEEEEcCCCcEE
Q 047728 257 SVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK-QECAVT-ALAISPDAAIVYCGSSDGLVN 334 (474)
Q Consensus 257 ~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~-~l~~~~~~~~l~~~~~dg~i~ 334 (474)
.+......|..+-..||+..+..-...++.++++......... ......+ ....|+ .+..-..+.-+++++.||.|.
T Consensus 215 ~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rk-l~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 215 LLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRK-LVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred hcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhh-hhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence 3444456677888899993222223378888887654332110 0000000 001122 122233566788899999988
Q ss_pred Ee-ecCcccc-cceee---eecceeeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728 335 FW-ERELNLS-HGGVL---RGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 335 v~-d~~~~~~-~~~~~---~~~~~~v~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
.| |.+.... ..... +-....+-.+.++ .+-+++-+..|++.++.....+...... --..+.-++++|.+.
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~---~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER---AYQAPQLVAMSPNQA 370 (733)
T ss_pred eeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh---hhcCcceeeeCcccc
Confidence 76 5543322 11111 1122334444443 4567778888999888765554322211 223567789999988
Q ss_pred cccccceEEEEEecCCCcEEEEEccCCCCCCCC
Q 047728 408 SLSREKRWILYSGSLDKSVKMWRVSEQAPPLVS 440 (474)
Q Consensus 408 ~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~ 440 (474)
+|++- +.|.|+++.+++..+....
T Consensus 371 --------~Ll~e-~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 371 --------YLLSE-DQGKIRLAQLENRNPEISW 394 (733)
T ss_pred --------hheee-cCCceEEEEecCCCCCccH
Confidence 66664 4578999999987665443
No 435
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.77 E-value=20 Score=37.93 Aligned_cols=157 Identities=10% Similarity=-0.000 Sum_probs=82.7
Q ss_pred cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC-
Q 047728 243 TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD- 320 (474)
Q Consensus 243 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~- 320 (474)
.|++++-. .....+.... .++....+.+. .++.++.++.+...++..... ........+..|.|+.++|-
T Consensus 471 ~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l-----~e~~~~~~e~evaCLDisp~~ 542 (1096)
T KOG1897|consen 471 SIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGGGLALFYLEIEDGGL-----REVSHKEFEYEVACLDISPLG 542 (1096)
T ss_pred cEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecCccEEEEEEeeccce-----eeeeeheecceeEEEecccCC
Confidence 36666643 2333333322 33333333344 777788888888777765431 12233344677999999983
Q ss_pred --CC---EEEEEcCCCcEEEeecC-ccccccee-ee----ecceeeEEEEecCCEEEEEeCCCcEEEEECC--CCceEEE
Q 047728 321 --AA---IVYCGSSDGLVNFWERE-LNLSHGGV-LR----GHKLAILCLVTAGNLVFSGSADMSICIWRRK--ENEHICL 387 (474)
Q Consensus 321 --~~---~l~~~~~dg~i~v~d~~-~~~~~~~~-~~----~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~--~~~~~~~ 387 (474)
.+ ++++|..+..+.+.-.. ........ +. +...-..++--+..+|.++..||.+.-|-+. +++..-.
T Consensus 543 d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~ 622 (1096)
T KOG1897|consen 543 DAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDR 622 (1096)
T ss_pred CCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccc
Confidence 22 78888877665543221 11111111 11 1112224455567899999999999877554 3332111
Q ss_pred EeecCCccceEEEEEeeCCc
Q 047728 388 SMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 388 ~~~~~h~~~v~~l~~~~~~~ 407 (474)
....--..|+.=-.|+....
T Consensus 623 Kk~~lGt~P~~Lr~f~sk~~ 642 (1096)
T KOG1897|consen 623 KKVTLGTQPISLRTFSSKSR 642 (1096)
T ss_pred cccccCCCCcEEEEEeeCCc
Confidence 11122344555555655544
No 436
>PLN02193 nitrile-specifier protein
Probab=91.77 E-value=15 Score=36.50 Aligned_cols=69 Identities=6% Similarity=-0.028 Sum_probs=39.4
Q ss_pred CCCEEEEEcCC----CcEEEeecCcccccceee----eecceeeEEEEecCCEEEEEeCC--------------CcEEEE
Q 047728 320 DAAIVYCGSSD----GLVNFWERELNLSHGGVL----RGHKLAILCLVTAGNLVFSGSAD--------------MSICIW 377 (474)
Q Consensus 320 ~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~l~sgs~d--------------g~i~iw 377 (474)
++++++.++.+ ..+.+||+.+..-..... ........+...++++++.|+.+ ..+.+|
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEE
Confidence 56677777655 458889987653221110 01111223344567777777753 247889
Q ss_pred ECCCCceEEEE
Q 047728 378 RRKENEHICLS 388 (474)
Q Consensus 378 d~~~~~~~~~~ 388 (474)
|..+.+...+.
T Consensus 408 D~~t~~W~~~~ 418 (470)
T PLN02193 408 DTETLQWERLD 418 (470)
T ss_pred EcCcCEEEEcc
Confidence 99888765443
No 437
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.75 E-value=1.8 Score=41.57 Aligned_cols=78 Identities=14% Similarity=0.056 Sum_probs=53.6
Q ss_pred eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeE----EEecC-------------C-C--eEE
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNS----IVAGF-------------D-G--LVF 277 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~----v~~~~-------------~-~--~l~ 277 (474)
.....+.+|+.+|++++.++...=|.|.++|+.++..++.+++-.+.-.. ..-.. . . +++
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 34456889999999988888777799999999999888877764332111 11000 1 1 355
Q ss_pred EeeCCCcEEEEEcccCCC
Q 047728 278 TGSADGTVKVWRRELQGK 295 (474)
Q Consensus 278 ~~~~dg~i~iwd~~~~~~ 295 (474)
-+-.-|.|.||.++.+.+
T Consensus 385 yaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPR 402 (415)
T ss_pred EeccCCeEEEEecCCCCE
Confidence 566788899999876543
No 438
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=91.70 E-value=16 Score=36.70 Aligned_cols=248 Identities=9% Similarity=0.095 Sum_probs=114.8
Q ss_pred CCEEEEeeCCCcEEEEeCCccc----cccccC-ccCEEEEEec-CC--EEEEEeCCCeEEEEecCCCCcceeeeecccCc
Q 047728 120 GDLLYTGSDSKNIRVWKNQREF----SGFKSN-SGLVKAIVIS-NE--KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPT 191 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~~~~----~~~~~h-~~~V~~i~~~-~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 191 (474)
++.++.+.++|.+........- ...-+. .....++.+- ++ +|+.|+.-|.=.++.+..........+
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~----- 296 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL----- 296 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----
T ss_pred CCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec-----
Confidence 6688889999988877533211 111111 3334455554 55 899998877666666653322221111
Q ss_pred cceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC----CC------EEEEEE---CCCcEEEEEcCCcceee--
Q 047728 192 FKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED----QN------LLYSAS---WDKTFKVWRTSDYKCLE-- 256 (474)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~----~~------~l~s~s---~dg~i~iwd~~~~~~~~-- 256 (474)
..-++|.++++.+. .. .|++++ .+|.+++..- |-...
T Consensus 297 --------------------------~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~ 348 (504)
T PF10433_consen 297 --------------------------PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGL 348 (504)
T ss_dssp ------------------------------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--
T ss_pred --------------------------cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceee
Confidence 14457777777531 12 566664 5678888742 22222
Q ss_pred e--eeec--CcceeEEEecCC-C-eEEEeeCCCcEEEEEccc-CCCcee-eeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728 257 S--VIAH--DDAVNSIVAGFD-G-LVFTGSADGTVKVWRREL-QGKGTK-HFFSQTLLKQECAVTALAISPDAAIVYCGS 328 (474)
Q Consensus 257 ~--~~~~--~~~v~~v~~~~~-~-~l~~~~~dg~i~iwd~~~-~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 328 (474)
. .... -..++.+..... + +++.... ..-+++.+.. ...... ......+......+.+-.+. +..++=.+
T Consensus 349 ~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~-~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt 425 (504)
T PF10433_consen 349 ELASSELPGVTGIWTLKLSSSDHSYLVLSFP-NETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVT 425 (504)
T ss_dssp EEEEEEESTEEEEEEE-SSSSSBSEEEEEES-SEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEE
T ss_pred eeeccCCCCceEEEEeeecCCCceEEEEEcC-CceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEe
Confidence 1 1111 233444444331 2 4554444 4445555531 000000 00000112222223333332 34444444
Q ss_pred CCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeec---CCccceEEEEEee
Q 047728 329 SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLT---GHSGPVKCLAVEK 404 (474)
Q Consensus 329 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~---~h~~~v~~l~~~~ 404 (474)
.. .|++.+.................+.+.+.++.+++.+..++.+.++.+............ .....|.|+...|
T Consensus 426 ~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 426 PK-GIRLIDLEDGKLTQEWKPPAGSIIVAASINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp SS-EEEEEESSSTSEEEEEE-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred cC-eEEEEECCCCeEEEEEeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 33 377777665544433333455667777778888888888999999998776532111111 1456788887765
No 439
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.68 E-value=1.5 Score=38.30 Aligned_cols=71 Identities=10% Similarity=0.153 Sum_probs=50.5
Q ss_pred eeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEE----e-ec-------CCccceEEEEEeeCCccccccceEEEEEec
Q 047728 354 AILCLVTAGNLVFSGSADMSICIWRRKENEHICLS----M-LT-------GHSGPVKCLAVEKDDESLSREKRWILYSGS 421 (474)
Q Consensus 354 ~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~----~-~~-------~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s 421 (474)
.+..+..++++|++-+.+|.+++||+.+.+..... . +. .....|..+.+..+|. -|++-+
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--------PiV~ls 85 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--------PIVTLS 85 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--------EEEEEe
Confidence 45557788999999999999999999987632111 0 11 3556788899988887 455544
Q ss_pred CCCcEEEEEccC
Q 047728 422 LDKSVKMWRVSE 433 (474)
Q Consensus 422 ~Dg~i~vw~~~~ 433 (474)
+|..+.|+..-
T Consensus 86 -ng~~y~y~~~L 96 (219)
T PF07569_consen 86 -NGDSYSYSPDL 96 (219)
T ss_pred -CCCEEEecccc
Confidence 57788887654
No 440
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.34 E-value=13 Score=35.17 Aligned_cols=198 Identities=14% Similarity=0.182 Sum_probs=105.9
Q ss_pred CCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEec----CCC---eEEEeeC-C---CcEEEEEcccCCCcee
Q 047728 230 EDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAG----FDG---LVFTGSA-D---GTVKVWRRELQGKGTK 298 (474)
Q Consensus 230 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~----~~~---~l~~~~~-d---g~i~iwd~~~~~~~~~ 298 (474)
|...+|+....++-+.+||+. |+.+..+. .+.++.+... -.+ -|++++. + ..|++|.+........
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 456788888888899999985 55566553 2334433321 123 2444443 2 4699998864221110
Q ss_pred eee--eeeeecccccEEEEEEc--C-CCC-EEEEEcCCCcEEEeecCcc---cc----cceeeeecceeeEEEEecCCEE
Q 047728 299 HFF--SQTLLKQECAVTALAIS--P-DAA-IVYCGSSDGLVNFWERELN---LS----HGGVLRGHKLAILCLVTAGNLV 365 (474)
Q Consensus 299 ~~~--~~~~~~~~~~v~~l~~~--~-~~~-~l~~~~~dg~i~v~d~~~~---~~----~~~~~~~~~~~v~~~~~~~~~l 365 (474)
... ...+......+..+|+- + ++. ++++...+|.+..|.+... .. +..+.......-+.+.....+|
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 000 00111222346777764 3 344 6666788899988877532 11 1111112222233344456799
Q ss_pred EEEeCCCcEEEEECCCC---ceEEEEeecC--CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 366 FSGSADMSICIWRRKEN---EHICLSMLTG--HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 366 ~sgs~dg~i~iwd~~~~---~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+.|-++--|.-|+.+.. ....+....+ ....|-.|++..... ...++|+|.-.+++..||+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~----g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSD----GKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CC----C-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCC----CCeEEEEEcCCCCeEEEEecCCC
Confidence 99999988888887622 2222333322 456788888876432 23457888888999999998753
No 441
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.19 E-value=5.5 Score=38.67 Aligned_cols=26 Identities=4% Similarity=-0.071 Sum_probs=21.4
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEE
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVW 247 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iw 247 (474)
.|..+..++.|..++-.+.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 57788889999999999999966654
No 442
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.10 E-value=7.7 Score=37.04 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=68.9
Q ss_pred ceeEEEecCCCeEEEeeC------------CC-cEEEEEcccC-CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC
Q 047728 264 AVNSIVAGFDGLVFTGSA------------DG-TVKVWRRELQ-GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS 329 (474)
Q Consensus 264 ~v~~v~~~~~~~l~~~~~------------dg-~i~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 329 (474)
....|+|.++|.|+++.. .+ .|.+++-... ++..+ ...+...-.....+++.+++ |+++..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~---~~vfa~~l~~p~Gi~~~~~G--lyV~~~ 89 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDK---SNVFAEELSMVTGLAVAVGG--VYVATP 89 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcce---eEEeecCCCCccceeEecCC--EEEeCC
Confidence 456788888885555532 23 5666653321 21111 11222223456889999888 444555
Q ss_pred CCcEEEeecCccc-------ccceeee------ecceeeEEEEecCCEEEEEeCC-------------------CcEEEE
Q 047728 330 DGLVNFWERELNL-------SHGGVLR------GHKLAILCLVTAGNLVFSGSAD-------------------MSICIW 377 (474)
Q Consensus 330 dg~i~v~d~~~~~-------~~~~~~~------~~~~~v~~~~~~~~~l~sgs~d-------------------g~i~iw 377 (474)
....++.|..... .+...+. .|...-+.+.++|.+.++-+.. |.|.-+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 4433344543211 1111111 2334457777888776654421 445556
Q ss_pred ECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728 378 RRKENEHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 378 d~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
+..+.+.. ..-.++ .....++|++++.
T Consensus 170 ~pdg~~~e--~~a~G~-rnp~Gl~~d~~G~ 196 (367)
T TIGR02604 170 NPDGGKLR--VVAHGF-QNPYGHSVDSWGD 196 (367)
T ss_pred ecCCCeEE--EEecCc-CCCccceECCCCC
Confidence 66555422 112232 3457899999987
No 443
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.48 E-value=6.2 Score=42.85 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=26.0
Q ss_pred CCeeEEEecCCCCEEEEEECCCcEEEEEcCC
Q 047728 221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSD 251 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 251 (474)
.....++|+|..++++.++.+|.|+++-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 3456789999999999999999999996543
No 444
>PRK13684 Ycf48-like protein; Provisional
Probab=90.23 E-value=16 Score=34.28 Aligned_cols=154 Identities=9% Similarity=-0.022 Sum_probs=77.1
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEE-EcCCcceeeee-eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCce
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVW-RTSDYKCLESV-IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iw-d~~~~~~~~~~-~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 297 (474)
...+.++.+.+++.+++++ ..|.+..- | ..++.-..+ ..-...++++.+.+++.++..+..|.+++=..+.+.. .
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~s-W 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLES-W 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCc-c
Confidence 3467889999987665554 45655432 2 122222222 2234678889999888555556677765321221111 1
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee--eecceeeEEEE-ecCCEEEEEeCCCcE
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL--RGHKLAILCLV-TAGNLVFSGSADMSI 374 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~~v~~~~-~~~~~l~sgs~dg~i 374 (474)
.. ...........+..+.+.+++..+++ +.+|.+.. ....+..-.... ..-......+. .+++..+..+..|.|
T Consensus 249 ~~-~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 249 SK-PIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cc-ccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 10 00110112345788999998776654 45665543 333332221111 11111222222 244555666678888
Q ss_pred EEEEC
Q 047728 375 CIWRR 379 (474)
Q Consensus 375 ~iwd~ 379 (474)
.-|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 77753
No 445
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.89 E-value=14 Score=33.09 Aligned_cols=101 Identities=15% Similarity=0.181 Sum_probs=59.6
Q ss_pred eeEEEecCCC--eEEEeeCCCc-EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-----CcEEEe
Q 047728 265 VNSIVAGFDG--LVFTGSADGT-VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-----GLVNFW 336 (474)
Q Consensus 265 v~~v~~~~~~--~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~v~ 336 (474)
-..|+++|.. -++.+-.-|+ ..++|.......... .........-.-.|+|||.+|++.-.| |.|-||
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~----~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL----VSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE----ecccCceeecccccCCCCcEEEeecCCCCCCCceEEEE
Confidence 3456667665 3444444444 567777654431111 001111112234699999999976443 679999
Q ss_pred ecCcccccceeeeecceee--EEEEecCCEEEEEe
Q 047728 337 ERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGS 369 (474)
Q Consensus 337 d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs 369 (474)
|.+........+..|...- +.+..||+.++.+.
T Consensus 146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 9987766655555554333 66778999888764
No 446
>PRK10115 protease 2; Provisional
Probab=89.74 E-value=29 Score=36.38 Aligned_cols=194 Identities=9% Similarity=0.019 Sum_probs=96.1
Q ss_pred CeeEEEecCCCCEEEEEEC-----CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eE-EEeeCC-----CcEEEEE
Q 047728 222 AISSLSMSEDQNLLYSASW-----DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTGSAD-----GTVKVWR 289 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~~~d-----g~i~iwd 289 (474)
.+..+.++|++++|+.+.. ...|++.|+.+++.+....... -..++|.+|+ .| ++...+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4667889999998876532 3458889998886433222111 1458999887 44 443322 2455566
Q ss_pred cccCCCceeeeeeeeeecccccEE-EEEEcCCCCEEEEEcC---CCcEEEeecCcccccceeeeecc-eeeEEEEecCCE
Q 047728 290 RELQGKGTKHFFSQTLLKQECAVT-ALAISPDAAIVYCGSS---DGLVNFWERELNLSHGGVLRGHK-LAILCLVTAGNL 364 (474)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~ 364 (474)
+.+....... .+........ .+..+.++++++..+. ++.+.+|+..........+..+. .....+...+..
T Consensus 206 lgt~~~~d~l----v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (686)
T PRK10115 206 IGTPASQDEL----VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHR 281 (686)
T ss_pred CCCChhHCeE----EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCE
Confidence 6544221111 1111112222 3333447776655443 35688888532211111111111 111222222333
Q ss_pred EEEEeCC----CcEEEEECC-CCceEEEEeecCC-c-cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 365 VFSGSAD----MSICIWRRK-ENEHICLSMLTGH-S-GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 365 l~sgs~d----g~i~iwd~~-~~~~~~~~~~~~h-~-~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
++.-+.. ..|...++. .++. ..+..+ . ..|..+.+..+ . ++++...+|.-+++-+..
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~---~~l~~~~~~~~i~~~~~~~~-~--------l~~~~~~~g~~~l~~~~~ 345 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQW---EELIPPRENIMLEGFTLFTD-W--------LVVEERQRGLTSLRQINR 345 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccC---eEEECCCCCCEEEEEEEECC-E--------EEEEEEeCCEEEEEEEcC
Confidence 3333322 234444444 2221 223333 2 36778888733 3 778888888877776653
No 447
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.68 E-value=2.1 Score=40.58 Aligned_cols=162 Identities=12% Similarity=0.073 Sum_probs=95.4
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee-ee-eecCc----cee-EEEecCCC-eEEEeeCCCcEEEE-E
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE-SV-IAHDD----AVN-SIVAGFDG-LVFTGSADGTVKVW-R 289 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~-~~~~~----~v~-~v~~~~~~-~l~~~~~dg~i~iw-d 289 (474)
-...|..+-..||++.++.-+. .++.++++.+..... .+ ....+ .|+ .+.....+ .++++..||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 4456778888999999988765 778888876533211 11 11111 122 11112234 68889999999887 5
Q ss_pred cccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEe
Q 047728 290 RELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS 369 (474)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs 369 (474)
.+.... ........+.-....+..+.-..+.+-+++-+..|++.++.....+...............+++.+.++++-.
T Consensus 298 vr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~ 376 (733)
T COG4590 298 VRRDGQ-PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED 376 (733)
T ss_pred eecCCC-CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeec
Confidence 554332 1111122222223344444433455667778888888887654443332222233556788999999888654
Q ss_pred CCCcEEEEECCCCc
Q 047728 370 ADMSICIWRRKENE 383 (474)
Q Consensus 370 ~dg~i~iwd~~~~~ 383 (474)
.|.|+++.+++..
T Consensus 377 -~gki~~~~l~Nr~ 389 (733)
T COG4590 377 -QGKIRLAQLENRN 389 (733)
T ss_pred -CCceEEEEecCCC
Confidence 5789999887765
No 448
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=89.24 E-value=34 Score=36.56 Aligned_cols=175 Identities=17% Similarity=0.123 Sum_probs=99.1
Q ss_pred EEEEEcCCcceeeeeeecCc----ceeEEEecCCC---eEEEee-----------CCCcEEEEEcccCCCceeeeeeeee
Q 047728 244 FKVWRTSDYKCLESVIAHDD----AVNSIVAGFDG---LVFTGS-----------ADGTVKVWRRELQGKGTKHFFSQTL 305 (474)
Q Consensus 244 i~iwd~~~~~~~~~~~~~~~----~v~~v~~~~~~---~l~~~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~ 305 (474)
|++.|..+++.+..+....+ .+.++.|+... .++++. .+|.++.|++-..+. +.. ....
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~--~le-llh~ 931 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGD--KLE-LLHK 931 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCc--eee-eeec
Confidence 67777766665554432222 34455555443 233332 245577776654333 110 1111
Q ss_pred ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeec-ceeeEEEEecCCEEEEEeCCCcEEEE--ECCCC
Q 047728 306 LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGH-KLAILCLVTAGNLVFSGSADMSICIW--RRKEN 382 (474)
Q Consensus 306 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sgs~dg~i~iw--d~~~~ 382 (474)
..-.+.| .++.|-..++++| ....+++||+...+.+.+....+ ...|..+...+..+++|...-.+.++ +...+
T Consensus 932 T~~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n 1008 (1205)
T KOG1898|consen 932 TEIPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDN 1008 (1205)
T ss_pred cCCCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCC
Confidence 1222333 4556655566644 56789999998776554443333 56678888889999999877666654 44444
Q ss_pred ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 383 EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 383 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+.. +..-..-...|+++.+-..+. +|.+..=|.+.+-++...
T Consensus 1009 ~l~-~fadD~~pR~Vt~~~~lD~~t---------vagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1009 QLI-VFADDPVPRHVTALELLDYDT---------VAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred eEE-EEeCCCccceeeEEEEecCCc---------eeeccccCcEEEEECCCc
Confidence 422 222222334678887776664 777777777777766543
No 449
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.02 E-value=3.1 Score=34.82 Aligned_cols=38 Identities=11% Similarity=0.062 Sum_probs=31.5
Q ss_pred cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 395 GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
..|..++|+|.|- ..+++.+|++...++.|.||.-...
T Consensus 86 ~~vv~~aWSP~Gl--~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGL--GPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCC--CCCCceEEEEEcCCCeEEEEecCCC
Confidence 3799999999874 3556779999999999999987643
No 450
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.60 E-value=19 Score=32.77 Aligned_cols=209 Identities=12% Similarity=0.092 Sum_probs=114.2
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEEcC------Cc-ceeeeeee-----cCcceeEEEecCCC-------------eE
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWRTS------DY-KCLESVIA-----HDDAVNSIVAGFDG-------------LV 276 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~v~~~~~~-------------~l 276 (474)
.-+.|+++|.+.+-++....+...+||.. .. .++.++.. .....+.+.|+... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999998888888888999999986 12 22333321 12356666665321 46
Q ss_pred EEeeCCCcEEEEEcccCCCceeeeeeeeeec-ccccEEEEEEcC--CCCEEEEE-cCCCcEEEeecCcccccc-eeeeec
Q 047728 277 FTGSADGTVKVWRRELQGKGTKHFFSQTLLK-QECAVTALAISP--DAAIVYCG-SSDGLVNFWERELNLSHG-GVLRGH 351 (474)
Q Consensus 277 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~--~~~~l~~~-~~dg~i~v~d~~~~~~~~-~~~~~~ 351 (474)
+.+++||+|.-|................-.. ....-..+++.. .+.+|+.+ -..++|.+||-.-..... .-+..-
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 8889999999998543322100001111111 122334566654 35555554 567899999865332110 000000
Q ss_pred -----ce--ee--------EEEE---ecCCEEEEEeCCCcEEEEECCCCceEEEEee--cCCccceEEEEEeeCCccccc
Q 047728 352 -----KL--AI--------LCLV---TAGNLVFSGSADMSICIWRRKENEHICLSML--TGHSGPVKCLAVEKDDESLSR 411 (474)
Q Consensus 352 -----~~--~v--------~~~~---~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~ 411 (474)
-. .| +.+. ++...=+.|..-|.|-+||....- +..+ .+.-..-+.|+..|..-. .
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l---~~r~as~g~LNaPWG~a~APa~FG--~ 258 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQL---LRRVASSGRLNAPWGLAIAPESFG--S 258 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcE---EEEeccCCcccCCceeeeChhhhC--C
Confidence 00 00 0111 112222334445789999987543 3333 344455677887664210 1
Q ss_pred cceEEEEEecCCCcEEEEEccCCC
Q 047728 412 EKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 412 ~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
-...+|+---.||+|..+|..++.
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCc
Confidence 111177777789999999988764
No 451
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.53 E-value=15 Score=35.18 Aligned_cols=104 Identities=11% Similarity=0.091 Sum_probs=67.3
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee----eeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCC
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL----ESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQG 294 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~ 294 (474)
..++|.++.|++|.+.|++--.+++|.+++....+.. .+.+.....|...+|.....++.....| +-+|-.....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pek 143 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEK 143 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhh
Confidence 5669999999999999999999999999987433222 2223334457888888665555444433 4555433222
Q ss_pred CceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS 328 (474)
Q Consensus 295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 328 (474)
. .......+...|.-..|.++.+.++.++
T Consensus 144 r-----slRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 144 R-----SLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred h-----hhhhhhhcccCccEEEEccccceEeeec
Confidence 2 1334455666777788888777554443
No 452
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.39 E-value=3.8 Score=38.42 Aligned_cols=107 Identities=16% Similarity=0.098 Sum_probs=58.1
Q ss_pred ceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceee-eeeeeeecccccEEEEEEcCC---CCEEEEEcCC---------
Q 047728 264 AVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKH-FFSQTLLKQECAVTALAISPD---AAIVYCGSSD--------- 330 (474)
Q Consensus 264 ~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~---~~~l~~~~~d--------- 330 (474)
..+.|+|.|++.++++...|.|++++.. +...... ...............++++|+ ..+|++....
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 3578999999977778889999999832 1110111 111223445678899999994 3444443331
Q ss_pred CcEEEeecCcc-------ccccee-----eeecceeeEEEEecCCEEEEEeCC
Q 047728 331 GLVNFWERELN-------LSHGGV-----LRGHKLAILCLVTAGNLVFSGSAD 371 (474)
Q Consensus 331 g~i~v~d~~~~-------~~~~~~-----~~~~~~~v~~~~~~~~~l~sgs~d 371 (474)
..|.-|..... +.+... ...|....+.|.++|.+.++.+..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 13333433322 111111 124777778899999766665543
No 453
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.30 E-value=23 Score=36.28 Aligned_cols=151 Identities=10% Similarity=-0.021 Sum_probs=75.3
Q ss_pred ecCcEEEEEEc-CCEEEEeeCCCcEEEEeCCcccccc-----ccCccCEEEEEecCCEEEEEeCCCeEEE-EecCCCCcc
Q 047728 109 EEGHIYSLAAA-GDLLYTGSDSKNIRVWKNQREFSGF-----KSNSGLVKAIVISNEKIFSGHQDGKIRV-WKVSSKDAS 181 (474)
Q Consensus 109 h~~~i~~~~~~-~~~l~tgs~dg~v~vwd~~~~~~~~-----~~h~~~V~~i~~~~~~l~s~~~dg~i~v-wd~~~~~~~ 181 (474)
..+.+..+.|+ ..-|+.-..+|+++||+.-.+.... ......|..+.+..+-++.-..+|.+.+ -++......
T Consensus 82 ~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~ 161 (829)
T KOG2280|consen 82 KHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLR 161 (829)
T ss_pred cCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhh
Confidence 44578899998 6678888999999999855333222 2222233333333233333333443333 233221111
Q ss_pred eeeeecccCccceeeeeecCCCCeEEEee--------------ec--cceeeeccCCeeEEEecCCCCEEEEEECCCcEE
Q 047728 182 IHKRVGTLPTFKDFIKCSMKPSNYIEVRR--------------HR--NGLWIKHFDAISSLSMSEDQNLLYSASWDKTFK 245 (474)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~ 245 (474)
....+...........+.-.+.....+.. .. ...+..-...+..+.++|+.++|+--..+|.|.
T Consensus 162 ~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~ 241 (829)
T KOG2280|consen 162 KMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIW 241 (829)
T ss_pred hCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEE
Confidence 11111111111111111111111000000 00 001111234577888999999999999999999
Q ss_pred EEEcCCcceeeeee
Q 047728 246 VWRTSDYKCLESVI 259 (474)
Q Consensus 246 iwd~~~~~~~~~~~ 259 (474)
+-+....++...+.
T Consensus 242 ~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 242 VVSIDLSQILCEFN 255 (829)
T ss_pred EEecchhhhhhccC
Confidence 99887766666554
No 454
>PRK13684 Ycf48-like protein; Provisional
Probab=88.27 E-value=23 Score=33.32 Aligned_cols=152 Identities=10% Similarity=0.087 Sum_probs=78.9
Q ss_pred CcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc
Q 047728 262 DDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN 341 (474)
Q Consensus 262 ~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~ 341 (474)
...+.++.+.+++.++..+..|.+..- .+.... . ...........++.+.+.++++.++++ ..|.+.+=..+.+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~--t--W~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G 245 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQT--A--WTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL 245 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCC--e--EEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC
Confidence 456788899998866666666755431 111111 1 111222345678999999998877765 5576653223333
Q ss_pred cccceeeee---cceeeE--EEEecCCEEEEEeCCCcEEEEECCCCce-EEEEeecCCccceEEEEEeeCCccccccceE
Q 047728 342 LSHGGVLRG---HKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEH-ICLSMLTGHSGPVKCLAVEKDDESLSREKRW 415 (474)
Q Consensus 342 ~~~~~~~~~---~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 415 (474)
..-.....+ ....+. .+.+++.. +.++.+|.|.. ....++. ..+.....-....+.+.|..++.
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~-------- 315 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK-------- 315 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCc--------
Confidence 221111111 111233 34445554 44555776553 3444332 11111122234578888887766
Q ss_pred EEEEecCCCcEEEEE
Q 047728 416 ILYSGSLDKSVKMWR 430 (474)
Q Consensus 416 ~l~s~s~Dg~i~vw~ 430 (474)
.+ ..+..|.|-.|+
T Consensus 316 ~~-~~G~~G~il~~~ 329 (334)
T PRK13684 316 GF-VLGQRGVLLRYV 329 (334)
T ss_pred eE-EECCCceEEEec
Confidence 44 456678887765
No 455
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.16 E-value=20 Score=32.43 Aligned_cols=162 Identities=11% Similarity=0.067 Sum_probs=91.0
Q ss_pred ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728 260 AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER 338 (474)
Q Consensus 260 ~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~ 338 (474)
+-...+.++.|+|+. .|++......-.++= ...+..... .....-.....+.+..+++++++--.++.+.++.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl-t~~Gdlirt----iPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL-TKEGDLIRT----IPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEE-ecCCceEEE----ecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence 334559999999998 666666555554542 222221111 11112334556777778888887777888888765
Q ss_pred Ccccccceee----------e-ecceeeEEEEecCCEEEEEeCCCcEEEEECCCCc-eEEEEeecCCc-------cceEE
Q 047728 339 ELNLSHGGVL----------R-GHKLAILCLVTAGNLVFSGSADMSICIWRRKENE-HICLSMLTGHS-------GPVKC 399 (474)
Q Consensus 339 ~~~~~~~~~~----------~-~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~~~h~-------~~v~~ 399 (474)
.......... + ...-.-+++.+....|+.+-+-.-+.||.+.... .........+. ..|.+
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 5432111110 1 1112236777778888888888888888775332 11111111221 24667
Q ss_pred EEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 400 LAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 400 l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
+.|.+.... +|+-+.+++.+.-.+...
T Consensus 238 l~~~~~~~~-------LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 238 LEFNAITNS-------LLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ceecCCCCc-------EEEEecCCceEEEEecCC
Confidence 777765553 666666777666666543
No 456
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.77 E-value=22 Score=32.67 Aligned_cols=152 Identities=12% Similarity=0.153 Sum_probs=69.8
Q ss_pred ecCcceeEEEecCCCeEEEeeCCCcE-EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728 260 AHDDAVNSIVAGFDGLVFTGSADGTV-KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER 338 (474)
Q Consensus 260 ~~~~~v~~v~~~~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~ 338 (474)
.-...+..+.-.+++.+++.+..|.+ .-||.-... -..........|..+.|.|++.+.+++ ..|.|++=+.
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~------w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT------WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-------EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc------ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 34567888888899955555555554 567643111 122333356789999999998876655 8888888762
Q ss_pred -Cccccccee---eeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCceE-EEEeecCCccceEEEEEeeCCccccc
Q 047728 339 -ELNLSHGGV---LRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHI-CLSMLTGHSGPVKCLAVEKDDESLSR 411 (474)
Q Consensus 339 -~~~~~~~~~---~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~~ 411 (474)
......... .......++.+.+ ++...++| ..|.+ +...+.++.- .......-...+..+.|..+.+
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~g-g~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~---- 288 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVG-GSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK---- 288 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEE-STT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE----
T ss_pred CCCccccccccCCcccCceeeEEEEecCCCCEEEEe-CCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc----
Confidence 211111110 1112223455554 44555544 45544 3444444421 1111223345688999987765
Q ss_pred cceEEEEEecCCCcEEEE
Q 047728 412 EKRWILYSGSLDKSVKMW 429 (474)
Q Consensus 412 ~~~~~l~s~s~Dg~i~vw 429 (474)
-++ -+.+|.|--|
T Consensus 289 ----gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 289 ----GFV-LGQDGVLLRY 301 (302)
T ss_dssp ----EEE-E-STTEEEEE
T ss_pred ----eEE-ECCCcEEEEe
Confidence 344 4567876554
No 457
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.70 E-value=9.5 Score=41.41 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=55.2
Q ss_pred ecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc-------eee------------eeeeeeecccccEEEEEEcCC
Q 047728 260 AHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG-------TKH------------FFSQTLLKQECAVTALAISPD 320 (474)
Q Consensus 260 ~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------~~~------------~~~~~~~~~~~~v~~l~~~~~ 320 (474)
...-.|+++....+|.++.++.|| .+|.+...... .+. .+......+..+|..++++..
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 345678899988888888888888 55554321110 000 011111255779999999999
Q ss_pred CCEEEEEcCCCcEEEeecCc
Q 047728 321 AAIVYCGSSDGLVNFWEREL 340 (474)
Q Consensus 321 ~~~l~~~~~dg~i~v~d~~~ 340 (474)
.+.+++-++.|.|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 99999999999999999876
No 458
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.54 E-value=24 Score=32.86 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=15.2
Q ss_pred CCCCEEEEEcCCC----cEEEeecCcc
Q 047728 319 PDAAIVYCGSSDG----LVNFWERELN 341 (474)
Q Consensus 319 ~~~~~l~~~~~dg----~i~v~d~~~~ 341 (474)
.++++.+.|+.++ .+.+||.++.
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCEEEEEcCCCCccccceEEEecCCC
Confidence 3567777777654 2567887765
No 459
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=87.27 E-value=14 Score=35.99 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=24.9
Q ss_pred cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 395 GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
..|..++..+..+ +|++...+|.|++|++..+
T Consensus 190 ~~I~~v~~d~~r~--------~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSRR--------LLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTTT--------EEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCcC--------EEEEEeCCCcEEEEEEeCC
Confidence 3488888888877 8999999999999999863
No 460
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.06 E-value=3.9 Score=24.36 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=27.5
Q ss_pred CCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEe
Q 047728 230 EDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVA 270 (474)
Q Consensus 230 ~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~ 270 (474)
|++++|+++. .+++|.++|..+++.+..+... .....+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 4677676655 5789999999998888877653 33344443
No 461
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.03 E-value=13 Score=29.20 Aligned_cols=107 Identities=11% Similarity=0.063 Sum_probs=62.4
Q ss_pred EEecCCCCEEEEEECCCcEEEEEcCCc--------ceeeeeeecCcceeEEEecC---CC--eEEEeeCCCcEEEEEccc
Q 047728 226 LSMSEDQNLLYSASWDKTFKVWRTSDY--------KCLESVIAHDDAVNSIVAGF---DG--LVFTGSADGTVKVWRREL 292 (474)
Q Consensus 226 l~~~~~~~~l~s~s~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~v~~~~---~~--~l~~~~~dg~i~iwd~~~ 292 (474)
-.|......|++++.-+.|.|++.... ..+..+. -...|++++..+ +. -++.-+....|..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 355566668888999999999986533 2333343 366788886443 22 334444567789999875
Q ss_pred CCCceeeeeeeeeecccccEEEEEEcC----CCCEEEEEcCCCcEEEeecCcc
Q 047728 293 QGKGTKHFFSQTLLKQECAVTALAISP----DAAIVYCGSSDGLVNFWERELN 341 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~l~~~~~dg~i~v~d~~~~ 341 (474)
... ...+.-...|.++.+-. ...+++ .+.+..|.-||.+..
T Consensus 83 N~d-------~Fyke~~DGvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 83 NSD-------LFYKEVPDGVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEGN 127 (136)
T ss_pred Cch-------hhhhhCccceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCCc
Confidence 432 22233345677776643 233333 334455666665543
No 462
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.69 E-value=7.3 Score=42.23 Aligned_cols=166 Identities=16% Similarity=0.253 Sum_probs=87.4
Q ss_pred ECCCcEEEEEcCCcceeeeeeecCcceeEEEec-CC-C-------eEEEeeCCCcEEEEEcccCCCceee-ee--eeeee
Q 047728 239 SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAG-FD-G-------LVFTGSADGTVKVWRRELQGKGTKH-FF--SQTLL 306 (474)
Q Consensus 239 s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~-~~-~-------~l~~~~~dg~i~iwd~~~~~~~~~~-~~--~~~~~ 306 (474)
+-|+.+.+|+.+++.....+.+-...|..+..- |. | .++.-..--.|.++-+......... .+ .....
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 458899999999987777777766666665432 21 1 3444444555666544322111100 00 11222
Q ss_pred cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEE
Q 047728 307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHIC 386 (474)
Q Consensus 307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~ 386 (474)
.....|.++....+|+.+++| .|| .+|.+.....-. . .+......|++ .+.-..+.=| .
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~g-W-f~~rc~Kiclt--------~s~ls~lvPs--------~ 234 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDG-W-FGSRCRKICLT--------KSVLSSLVPS--------L 234 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCc-h-hhcccccccCc--------hhHHHHhhhh--------h
Confidence 335568888877788877755 455 444432111100 0 00001111111 1000000000 0
Q ss_pred EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 387 LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 387 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
......+..+|..++...... ++++-+..|+|++|++..
T Consensus 235 ~~~~~~~~dpI~qi~ID~SR~--------IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 235 LSVPGSSKDPIRQITIDNSRN--------ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hcCCCCCCCcceeeEeccccc--------eeeeeccCceEEEEEccC
Confidence 111135677899999887776 899999999999999987
No 463
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=86.65 E-value=31 Score=33.08 Aligned_cols=16 Identities=6% Similarity=0.221 Sum_probs=10.2
Q ss_pred EEEEecCCEEEEEeCC
Q 047728 356 LCLVTAGNLVFSGSAD 371 (474)
Q Consensus 356 ~~~~~~~~~l~sgs~d 371 (474)
.++..++++++.|+..
T Consensus 338 ~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 338 VSVSWNNGVLLIGGET 353 (376)
T ss_pred EEEEeCCEEEEEcCCC
Confidence 3555667777777753
No 464
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.45 E-value=4.7 Score=40.96 Aligned_cols=37 Identities=30% Similarity=0.684 Sum_probs=28.3
Q ss_pred CeeEEEecC----CCCEEEEEECCCcEEEEEcCCcceeeee
Q 047728 222 AISSLSMSE----DQNLLYSASWDKTFKVWRTSDYKCLESV 258 (474)
Q Consensus 222 ~V~~l~~~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 258 (474)
.+..+++.. +..+|++.+.|+++|+||+.+++++.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 445555555 6789999999999999999999996655
No 465
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.36 E-value=23 Score=31.37 Aligned_cols=138 Identities=16% Similarity=0.170 Sum_probs=73.2
Q ss_pred EEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeC-C--CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC
Q 047728 244 FKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA-D--GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP 319 (474)
Q Consensus 244 i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 319 (474)
-.+||+.+.+....-....-...+-.+.+|| ++.+|+. + ..+++++......................-.....-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 3568887765432211112222333567888 6666654 2 3478887543111111111111133444555666778
Q ss_pred CCCEEEEEcCCCc-EEEeecCcc-cccce--ee-------eecceeeEEEEecCCEEEEEeCCCcEEEEECCCCc
Q 047728 320 DAAIVYCGSSDGL-VNFWERELN-LSHGG--VL-------RGHKLAILCLVTAGNLVFSGSADMSICIWRRKENE 383 (474)
Q Consensus 320 ~~~~l~~~~~dg~-i~v~d~~~~-~~~~~--~~-------~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~ 383 (474)
||+.|+.|+.... ..+|..... ..... .+ ...--+.+-+.|+|++++.+..+ -.|||..+.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~ 200 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNT 200 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCe
Confidence 9999999988753 344543221 11111 11 11223457778899999988865 4566887765
No 466
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.07 E-value=0.1 Score=49.39 Aligned_cols=141 Identities=11% Similarity=0.065 Sum_probs=89.5
Q ss_pred eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeee
Q 047728 223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHF 300 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~ 300 (474)
.....|-+.+.-++.++.+..|..||- .++.+..+. ..+....++|..++ .++.+-..+.+.+||+......
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq---- 110 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ---- 110 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH----
Confidence 334567777767888888999999984 344444332 24455667787777 5667778899999998754321
Q ss_pred eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEec-CCEEEEEeCCC
Q 047728 301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTA-GNLVFSGSADM 372 (474)
Q Consensus 301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sgs~dg 372 (474)
+...+....-.-+.|++....++.+...|.+.+|+..+.+... ....|...++++... .++.+.++.|.
T Consensus 111 --qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii-v~Gkh~RRgtq~av~lEd~vil~dcd~ 180 (615)
T KOG2247|consen 111 --QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII-VMGKHQRRGTQIAVTLEDYVILCDCDN 180 (615)
T ss_pred --HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhh-hhcccccceeEEEecccceeeecCcHH
Confidence 1111111122227888888899999999999999987665432 222266666666554 44555555443
No 467
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=85.84 E-value=25 Score=31.39 Aligned_cols=114 Identities=9% Similarity=-0.027 Sum_probs=65.1
Q ss_pred cceeEEEecCCC-eEEEeeCCC--cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728 263 DAVNSIVAGFDG-LVFTGSADG--TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339 (474)
Q Consensus 263 ~~v~~v~~~~~~-~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~ 339 (474)
.....+.+..++ ++-+.+.-| .|+.+|+.+++......+ ....--..++.. +++.....-.++...+||..
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-----~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-----PPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE------TTT--EEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-----CccccceeEEEE-CCEEEEEEecCCeEEEEccc
Confidence 345677786677 556666666 588888886553222111 111122233333 33444445678899999998
Q ss_pred cccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCce
Q 047728 340 LNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEH 384 (474)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~ 384 (474)
+-+....+.....+ ..+..+++.|+.......|+++|..+.+.
T Consensus 119 tl~~~~~~~y~~EG--WGLt~dg~~Li~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 119 TLKKIGTFPYPGEG--WGLTSDGKRLIMSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp TTEEEEEEE-SSS----EEEECSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred cceEEEEEecCCcc--eEEEcCCCEEEEECCccceEEECCcccce
Confidence 76655444333333 44447888888888888999999877653
No 468
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.74 E-value=31 Score=32.21 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=37.3
Q ss_pred CCCEEEEEcC-----CCcEEEeecCcccccce-eeee-cceeeEEEEecCCEEEEEeCCC----cEEEEECCCCceEE
Q 047728 320 DAAIVYCGSS-----DGLVNFWERELNLSHGG-VLRG-HKLAILCLVTAGNLVFSGSADM----SICIWRRKENEHIC 386 (474)
Q Consensus 320 ~~~~l~~~~~-----dg~i~v~d~~~~~~~~~-~~~~-~~~~v~~~~~~~~~l~sgs~dg----~i~iwd~~~~~~~~ 386 (474)
++++.+.|+. ...+..||+.+..-... .+.. ......+...++++.+.|+.++ .+.+||..+.+...
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~ 200 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQK 200 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEE
Confidence 4566666664 23578888876532211 0111 1122233455677777787654 35688988876543
No 469
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=85.36 E-value=37 Score=32.87 Aligned_cols=146 Identities=18% Similarity=0.252 Sum_probs=80.9
Q ss_pred CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC----CCC
Q 047728 158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE----DQN 233 (474)
Q Consensus 158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~----~~~ 233 (474)
.+.|++|+..|.++||+............-+ ..-..+|..+..-. ...
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE----------------------------~~l~~PILqv~~G~F~s~~~~ 88 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE----------------------------TQLKDPILQVECGKFVSGSED 88 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEE----------------------------EecCCcEEEEEeccccCCCCc
Confidence 4689999999999999985543221100000 01234555554432 122
Q ss_pred EEEEEECCCcEEEEEcCC--cc-------eeeeeeecC--cceeEEEecCCC------eEEEeeCCCcEEEEEcccCCCc
Q 047728 234 LLYSASWDKTFKVWRTSD--YK-------CLESVIAHD--DAVNSIVAGFDG------LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 234 ~l~s~s~dg~i~iwd~~~--~~-------~~~~~~~~~--~~v~~v~~~~~~------~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
..++.-.-..+.||.+.. +. .+..+..|. .....+++.+-| .+.+-+-||.+.+|+-+...
T Consensus 89 ~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-- 166 (418)
T PF14727_consen 89 LQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-- 166 (418)
T ss_pred ceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--
Confidence 223334456677776621 11 222333333 223333333221 78889999999999865221
Q ss_pred eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728 297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER 338 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~ 338 (474)
+ .......--.-.+++.+....|++++.+..+..|..
T Consensus 167 ----f-~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 167 ----F-SRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred ----E-EEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 1 111112223345788888889999999989998864
No 470
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=84.82 E-value=17 Score=28.55 Aligned_cols=107 Identities=18% Similarity=0.133 Sum_probs=60.0
Q ss_pred eEEEeeCCCcEEEEEcccCCCcee-eeeeeeeecccccEEEEEEcC-----CCCEEEEEcCCCcEEEeecCcccccceee
Q 047728 275 LVFTGSADGTVKVWRRELQGKGTK-HFFSQTLLKQECAVTALAISP-----DAAIVYCGSSDGLVNFWERELNLSHGGVL 348 (474)
Q Consensus 275 ~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~-----~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 348 (474)
.|++++.-|+|.|++......... ......+..-...|++|+-.+ +...|+.|+. ..+..||+..+..+....
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyke 90 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYKE 90 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhhh
Confidence 788888899999998764332111 111223334455677776544 3456666654 579999998775543322
Q ss_pred eecceeeEEEE---e-cCCEEEEEeCCCcEEEEECCCCc
Q 047728 349 RGHKLAILCLV---T-AGNLVFSGSADMSICIWRRKENE 383 (474)
Q Consensus 349 ~~~~~~v~~~~---~-~~~~l~sgs~dg~i~iwd~~~~~ 383 (474)
.......+.+- . ...++++|+ +..|.-||.+..+
T Consensus 91 ~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e 128 (136)
T PF14781_consen 91 VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNE 128 (136)
T ss_pred CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcE
Confidence 22222222221 1 234444444 6677778777655
No 471
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.73 E-value=16 Score=35.61 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=78.9
Q ss_pred eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC-------EEEEEcCCCcEEEeecCccccccee
Q 047728 275 LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA-------IVYCGSSDGLVNFWERELNLSHGGV 347 (474)
Q Consensus 275 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-------~l~~~~~dg~i~v~d~~~~~~~~~~ 347 (474)
.+..|.....++--|++.+.. ......+... -+.|.|..+ .-++|-++..|.-.|.+-.......
T Consensus 482 i~~dg~~~~kLykmDIErGkv------veeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKV------VEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred EEecCCCcccceeeeccccee------eeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence 444556666666666665432 2333333332 456666321 2233555666666665533211111
Q ss_pred ee-----ecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC
Q 047728 348 LR-----GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL 422 (474)
Q Consensus 348 ~~-----~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~ 422 (474)
.. +.............++++++..|.|++||.-..+ ....+.+....|..+....+|.. +|+||
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r--AKtalP~lG~aIk~idvta~Gk~-------ilaTC-- 622 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR--AKTALPGLGDAIKHIDVTANGKH-------ILATC-- 622 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcch--hhhcCcccccceeeeEeecCCcE-------EEEee--
Confidence 10 1111112223357799999999999999986554 34466777889999999999983 56665
Q ss_pred CCcEEEEEcc
Q 047728 423 DKSVKMWRVS 432 (474)
Q Consensus 423 Dg~i~vw~~~ 432 (474)
...+.+-|+.
T Consensus 623 k~yllL~d~~ 632 (776)
T COG5167 623 KNYLLLTDVP 632 (776)
T ss_pred cceEEEEecc
Confidence 3456666654
No 472
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=83.85 E-value=31 Score=33.76 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=62.0
Q ss_pred CcceeEEEecCCCeEEEeeC-CCcEEEEEcccCCCceeeeeeeeee-cccccEEEEEEcCCC------CEEEEEc-----
Q 047728 262 DDAVNSIVAGFDGLVFTGSA-DGTVKVWRRELQGKGTKHFFSQTLL-KQECAVTALAISPDA------AIVYCGS----- 328 (474)
Q Consensus 262 ~~~v~~v~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~------~~l~~~~----- 328 (474)
-...+.|+|.|++.+++.-. .|.|++++...........+..... ........|+++|+- .+|++..
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 44568999999996666666 6999999754322111111111111 246778999999874 3455442
Q ss_pred -----CCCcEEEeecCcc----cccceee------eecceeeEEEEecCCEEEEEeCC
Q 047728 329 -----SDGLVNFWERELN----LSHGGVL------RGHKLAILCLVTAGNLVFSGSAD 371 (474)
Q Consensus 329 -----~dg~i~v~d~~~~----~~~~~~~------~~~~~~v~~~~~~~~~l~sgs~d 371 (474)
....|.-|.+... .....++ ..|...-+.|.++|.+.++.+..
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1233444544311 0011111 24667778899999876655543
No 473
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=83.36 E-value=42 Score=31.91 Aligned_cols=139 Identities=17% Similarity=0.260 Sum_probs=79.4
Q ss_pred CcEEEEEcC--Ccceeeeeee-------cCcceeEEEec--C-CC--eEEEeeCCCcEEEEEcccCCCce-eeeeeeeee
Q 047728 242 KTFKVWRTS--DYKCLESVIA-------HDDAVNSIVAG--F-DG--LVFTGSADGTVKVWRRELQGKGT-KHFFSQTLL 306 (474)
Q Consensus 242 g~i~iwd~~--~~~~~~~~~~-------~~~~v~~v~~~--~-~~--~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~ 306 (474)
.+|++|.+. ++. +..+.. ....++.+|.- + ++ ++++...+|.+..|.+....... ...+.+.+
T Consensus 127 n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f- 204 (381)
T PF02333_consen 127 NSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF- 204 (381)
T ss_dssp -EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE-
T ss_pred CeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe-
Confidence 468888764 332 222221 12345667653 3 34 77788899999999987544432 22233333
Q ss_pred cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc-ceee---ee--c--ceeeEEEEe--cC-CEEEEEe-CCCcE
Q 047728 307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH-GGVL---RG--H--KLAILCLVT--AG-NLVFSGS-ADMSI 374 (474)
Q Consensus 307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~---~~--~--~~~v~~~~~--~~-~~l~sgs-~dg~i 374 (474)
.-...+..+..+.....|+.+-++.-|.-|+.+..... ...+ .+ . ...-+++-. ++ .||++.+ .+++.
T Consensus 205 ~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf 284 (381)
T PF02333_consen 205 KVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF 284 (381)
T ss_dssp E-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred cCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence 34557999999999999999999988888887633211 1111 11 1 112244433 33 3555444 67899
Q ss_pred EEEECCCC
Q 047728 375 CIWRRKEN 382 (474)
Q Consensus 375 ~iwd~~~~ 382 (474)
.||+.+..
T Consensus 285 ~Vy~r~~~ 292 (381)
T PF02333_consen 285 AVYDREGP 292 (381)
T ss_dssp EEEESSTT
T ss_pred EEEecCCC
Confidence 99999754
No 474
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=83.04 E-value=34 Score=30.61 Aligned_cols=111 Identities=20% Similarity=0.105 Sum_probs=66.6
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEE-cCCcceee-eeeec--CcceeEEEecCCC-eEEEe---eCCCcEEEEEcccC
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWR-TSDYKCLE-SVIAH--DDAVNSIVAGFDG-LVFTG---SADGTVKVWRRELQ 293 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd-~~~~~~~~-~~~~~--~~~v~~v~~~~~~-~l~~~---~~dg~i~iwd~~~~ 293 (474)
.+..-.|.+++...+....+...+++. ..+++... .+... ...|..+.++||| .++.. ..++.|.+=-+...
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 566778888877766666666667663 23332221 12111 1289999999999 44333 34577777766544
Q ss_pred CCceeee---eeeeeecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728 294 GKGTKHF---FSQTLLKQECAVTALAISPDAAIVYCGSSDGL 332 (474)
Q Consensus 294 ~~~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 332 (474)
....... ...........+..++|.+++.+++.+...+.
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence 4331111 12222233568999999999988877766544
No 475
>PRK13613 lipoprotein LpqB; Provisional
Probab=82.64 E-value=46 Score=34.06 Aligned_cols=148 Identities=17% Similarity=0.155 Sum_probs=76.2
Q ss_pred cEEEEEEcCCCCEEEEEcCCC-cEEEeecCcccc----cceeeeecceeeEEEEecCCEEEEEeC--CC--cEEEEECCC
Q 047728 311 AVTALAISPDAAIVYCGSSDG-LVNFWERELNLS----HGGVLRGHKLAILCLVTAGNLVFSGSA--DM--SICIWRRKE 381 (474)
Q Consensus 311 ~v~~l~~~~~~~~l~~~~~dg-~i~v~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~l~sgs~--dg--~i~iwd~~~ 381 (474)
.+.+.+.++++..++....++ .+++..+..+.. ....+.+....--+|..++ .+.+... ++ .+++..- .
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~ 441 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-D 441 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-C
Confidence 678899999999888877666 455544332222 1123333333334444445 4555422 22 2555543 4
Q ss_pred CceEEEEeecCCcc-ceEEEEEeeCCccccccceEEEEEe-cCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCcccc
Q 047728 382 NEHICLSMLTGHSG-PVKCLAVEKDDESLSREKRWILYSG-SLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPY 459 (474)
Q Consensus 382 ~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~~~~l~s~-s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 459 (474)
++...+... ...+ .|..+.+++|+-.. .++.. ...+.|.|=-+.....-.........+..--..+.++
T Consensus 442 G~~~~V~~~-~l~g~~I~~lrvSrDG~Rv------Avv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~-- 512 (599)
T PRK13613 442 GEPVEVRTP-ELDGHRVVAVRVARDGVRV------ALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDM-- 512 (599)
T ss_pred CcEEEeecc-ccCCCEeEEEEECCCccEE------EEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCcccee--
Confidence 443322222 2333 79999999999732 22222 2335666666554322211111222222222236777
Q ss_pred CCCCCcCCceee
Q 047728 460 APSFSSQGRICQ 471 (474)
Q Consensus 460 ~p~~s~Dg~~l~ 471 (474)
+|..|+++++
T Consensus 513 --~W~~~~sL~V 522 (599)
T PRK13613 513 --SWAGDSQLVV 522 (599)
T ss_pred --EEcCCCEEEE
Confidence 6777888877
No 476
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=81.77 E-value=86 Score=34.34 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=89.3
Q ss_pred eEEEeeC---------CCcEEEEEccc----CC-Cceeeeeee-eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728 275 LVFTGSA---------DGTVKVWRREL----QG-KGTKHFFSQ-TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339 (474)
Q Consensus 275 ~l~~~~~---------dg~i~iwd~~~----~~-~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~ 339 (474)
++++|.. -|.+.|+|+-. ++ ...+..+.. ......+.|..++= -+|.++. +....|.+|+++
T Consensus 1048 ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G~l~~--~~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRGHLLS--SQGQKIIVRKLD 1124 (1366)
T ss_pred eEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-eccEEEE--ccCcEEEEEEec
Confidence 6776653 48899999643 11 112222222 22334566665553 2454443 344578999984
Q ss_pred c-ccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeec--CCccceEEEEEeeCCccccccceEE
Q 047728 340 L-NLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLT--GHSGPVKCLAVEKDDESLSREKRWI 416 (474)
Q Consensus 340 ~-~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~~~~ 416 (474)
. ......-+..-...+.++..-.++|+.|..-..|.+.-....... +..+. ...-.+.++.|--++..+ .
T Consensus 1125 r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~r-lsL~srd~~~l~v~s~EFLVdg~~L------~ 1197 (1366)
T KOG1896|consen 1125 RDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYR-LSLLSRDFEPLNVYSTEFLVDGSNL------S 1197 (1366)
T ss_pred cCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceE-EEEeecCCchhhceeeeeEEcCCee------E
Confidence 3 333333333344445555556889999988788877666543221 22221 222357888888888755 8
Q ss_pred EEEecCCCcEEEEEccCCC
Q 047728 417 LYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 417 l~s~s~Dg~i~vw~~~~~~ 435 (474)
++.+..|+.|+++-.....
T Consensus 1198 flvsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1198 FLVSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred EEEEcCCCcEEEEEeCCCC
Confidence 9999999999999876543
No 477
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=81.63 E-value=14 Score=30.81 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=25.4
Q ss_pred ccEEEEEEcCCC------CEEEEEcCCCcEEEeecCc
Q 047728 310 CAVTALAISPDA------AIVYCGSSDGLVNFWEREL 340 (474)
Q Consensus 310 ~~v~~l~~~~~~------~~l~~~~~dg~i~v~d~~~ 340 (474)
..+..++|+|.| -+|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999943 3788899999999997654
No 478
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=81.34 E-value=1.1e+02 Score=35.07 Aligned_cols=293 Identities=16% Similarity=0.234 Sum_probs=136.7
Q ss_pred EEEcCCE-EEEeeCCCcEEEEeCCcccc----------ccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceee
Q 047728 116 LAAAGDL-LYTGSDSKNIRVWKNQREFS----------GFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHK 184 (474)
Q Consensus 116 ~~~~~~~-l~tgs~dg~v~vwd~~~~~~----------~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 184 (474)
++++|.. +.++.+...+.+|+...... .+.+......+|.++++.|+++..+|.++.=++...+... .
T Consensus 445 v~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~drLFvADseGkLYsa~l~~~~~~~-~ 523 (1774)
T PF11725_consen 445 VAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSNDRLFVADSEGKLYSADLPAAQDNE-P 523 (1774)
T ss_pred ccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCCeEEEEeCCCCEEecccccccCCC-c
Confidence 3444665 66777777779997543311 1222334677888889999999999988877766543210 0
Q ss_pred eecccCccc-eeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-CC-cE-EEEEcCCcceeeeeee
Q 047728 185 RVGTLPTFK-DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-DK-TF-KVWRTSDYKCLESVIA 260 (474)
Q Consensus 185 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg-~i-~iwd~~~~~~~~~~~~ 260 (474)
.+...+... ......+... ..-.+.+.+..+.+.++.=+..|..-.+.-. ++ .+ -=|++..--.+..-.+
T Consensus 524 ~l~~~p~~~~~~~~~~~G~~------~~VtGF~~gd~G~lhAlikd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~G 597 (1774)
T PF11725_consen 524 KLKLMPEPAYQLLGSALGGD------HKVTGFISGDDGQLHALIKDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRG 597 (1774)
T ss_pred ceEecccccccccccccccc------ceeeccccCCCCeeeEEEeccCCceeeccccccCCccCCCCcccceeEeeccCC
Confidence 000000000 0000000000 0000111122222333322222211111111 00 00 0144433222211111
Q ss_pred cC-----cceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeee----------eeeeeecccccEEEEEEcCCCCEEE
Q 047728 261 HD-----DAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHF----------FSQTLLKQECAVTALAISPDAAIVY 325 (474)
Q Consensus 261 ~~-----~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~v~~l~~~~~~~~l~ 325 (474)
-. .+-..+.+...|.+ |-.||.|..||-....-..... -...+.-.++.|..+.+++...-++
T Consensus 598 L~~~~~p~~~~~ldl~r~G~v--~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~ 675 (1774)
T PF11725_consen 598 LPKPPAPAPHEILDLGRAGLV--GLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIA 675 (1774)
T ss_pred CCCCCCCChHHhhccccccce--eeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccc
Confidence 11 11122333444433 4457999999865322100000 0111222356677777777655554
Q ss_pred EEcCCCcEEEeecCcccccceeeeec-ceeeEEEEe-cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEe
Q 047728 326 CGSSDGLVNFWERELNLSHGGVLRGH-KLAILCLVT-AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE 403 (474)
Q Consensus 326 ~~~~dg~i~v~d~~~~~~~~~~~~~~-~~~v~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~ 403 (474)
-+.. ..+.+=-.++.......+.+- ...+.+|.. +++.+++....|.+.... ..+.+. .....+-.+.|..+++.
T Consensus 676 ~g~~-~~~a~~~~r~~~e~G~~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~-~l~~~gl~G~ik~l~lD 752 (1774)
T PF11725_consen 676 HGDN-NVFALPQRRNKVELGDALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPV-PLSRPGLSGEIKDLALD 752 (1774)
T ss_pred cCCC-cccccccccCCCCCCccccCCCcCcceeEEEEcCCceEEeccCCcccccc-CCCCCc-cCCCCCCCcchhheeec
Confidence 4322 222222222222222222222 233445543 677888889999999998 555543 22344567899999999
Q ss_pred eCCccccccceEEEEEecCCCcEEEE
Q 047728 404 KDDESLSREKRWILYSGSLDKSVKMW 429 (474)
Q Consensus 404 ~~~~~~~~~~~~~l~s~s~Dg~i~vw 429 (474)
.+.. |+.-..+|.++--
T Consensus 753 ~~~n---------L~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 753 EKQN---------LYALTSTGELFRL 769 (1774)
T ss_pred cccc---------eeEecCCCceeec
Confidence 8876 6666677866543
No 479
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=80.29 E-value=11 Score=38.25 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=41.0
Q ss_pred ecCCEEEEEeCCCcEEEEECCC----CceEEEEeecCC--------------------ccceEEEEEee----CCccccc
Q 047728 360 TAGNLVFSGSADMSICIWRRKE----NEHICLSMLTGH--------------------SGPVKCLAVEK----DDESLSR 411 (474)
Q Consensus 360 ~~~~~l~sgs~dg~i~iwd~~~----~~~~~~~~~~~h--------------------~~~v~~l~~~~----~~~~~~~ 411 (474)
.+...++.+..||.+....... +.......+..+ .+.+..++++. +..
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 231 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDT---- 231 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTT----
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCC----
Confidence 3777888888999988887764 211111111111 23455566655 444
Q ss_pred cceEEEEEecCCCcEEEEEccCCCC
Q 047728 412 EKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 412 ~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
+|++.+.|+.+|+|++.++..
T Consensus 232 ----~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 232 ----FLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp ----EEEEEETTSEEEEEETTTTCE
T ss_pred ----EEEEEeCCCeEEEEECCCCeE
Confidence 899999999999999998855
No 480
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=80.23 E-value=20 Score=35.06 Aligned_cols=31 Identities=23% Similarity=0.538 Sum_probs=25.3
Q ss_pred ccEEEEEEcCCCCEEEEEcCCCcEEEeecCc
Q 047728 310 CAVTALAISPDAAIVYCGSSDGLVNFWEREL 340 (474)
Q Consensus 310 ~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~ 340 (474)
..|..++..+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999999889999999999999999964
No 481
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=79.41 E-value=67 Score=31.58 Aligned_cols=55 Identities=9% Similarity=0.010 Sum_probs=37.5
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce--eeeee-----ecCcceeEEEecCC
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC--LESVI-----AHDDAVNSIVAGFD 273 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~-----~~~~~v~~v~~~~~ 273 (474)
.-..-+.|+|.|++++|++--..|.|++++..++.. +..+. ........|+++|+
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 455678999999997777655469999998655432 21111 12466788999876
No 482
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=79.31 E-value=57 Score=30.74 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=18.6
Q ss_pred EEEecCCEEEEEeCC----------------------CcEEEEECCCCceE
Q 047728 357 CLVTAGNLVFSGSAD----------------------MSICIWRRKENEHI 385 (474)
Q Consensus 357 ~~~~~~~~l~sgs~d----------------------g~i~iwd~~~~~~~ 385 (474)
+...++++.+.|+.+ ..+.+||..+.+..
T Consensus 253 a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~ 303 (346)
T TIGR03547 253 AGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWS 303 (346)
T ss_pred eeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccc
Confidence 344577777887753 14678888766644
No 483
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=79.25 E-value=6 Score=21.28 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=15.5
Q ss_pred cEEEEEEcCCEEEEeeCCCcEEEE
Q 047728 112 HIYSLAAAGDLLYTGSDSKNIRVW 135 (474)
Q Consensus 112 ~i~~~~~~~~~l~tgs~dg~v~vw 135 (474)
.|.+++....+++.+.+.+.+|+|
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEec
Confidence 356666666666666666666665
No 484
>PLN02193 nitrile-specifier protein
Probab=79.06 E-value=71 Score=31.72 Aligned_cols=68 Identities=4% Similarity=-0.059 Sum_probs=37.2
Q ss_pred CCCEEEEEcCCC-----cEEEeecCccccccee----eeecceeeEEEEecCCEEEEEeCC----CcEEEEECCCCceEE
Q 047728 320 DAAIVYCGSSDG-----LVNFWERELNLSHGGV----LRGHKLAILCLVTAGNLVFSGSAD----MSICIWRRKENEHIC 386 (474)
Q Consensus 320 ~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~l~sgs~d----g~i~iwd~~~~~~~~ 386 (474)
++++++.|+.++ .+..||+.+..-.... .............++++++.|+.+ ..+.+||+.+.+...
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~ 357 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQ 357 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEE
Confidence 456666676543 3667777654321100 001111122233467777777755 468999998887654
Q ss_pred E
Q 047728 387 L 387 (474)
Q Consensus 387 ~ 387 (474)
+
T Consensus 358 ~ 358 (470)
T PLN02193 358 V 358 (470)
T ss_pred e
Confidence 3
No 485
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=78.59 E-value=66 Score=31.07 Aligned_cols=150 Identities=11% Similarity=0.054 Sum_probs=75.0
Q ss_pred eeEEEecCCCCEEEEEECCCcEEEEEcCCcce--eeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCcee-e
Q 047728 223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC--LESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTK-H 299 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~ 299 (474)
...+...+++.+++.+..-..++-||- +.. ...-......+..+.+.+++.++..+..|.+..=+ ..+..... .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~-d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSK-GTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEec-CCCCcccccc
Confidence 445566778777766654333333442 221 11112234567889998888666666777754422 21110000 0
Q ss_pred eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee--eecceeeEEEEe-cCCEEEEEeCCCcEEE
Q 047728 300 FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL--RGHKLAILCLVT-AGNLVFSGSADMSICI 376 (474)
Q Consensus 300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~~v~~~~~-~~~~l~sgs~dg~i~i 376 (474)
+...........+..+.|.+++..+++| ..|.+.... ..++.-.... ..-......+.+ +.+..+..+.+|.|.-
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~ 395 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLR 395 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEE
Confidence 0111111123458889999887776655 567665543 2222211111 112233445553 3455666666787765
Q ss_pred E
Q 047728 377 W 377 (474)
Q Consensus 377 w 377 (474)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 5
No 486
>PLN02153 epithiospecifier protein
Probab=78.26 E-value=61 Score=30.49 Aligned_cols=68 Identities=4% Similarity=-0.076 Sum_probs=35.5
Q ss_pred CCCEEEEEcCC-----------CcEEEeecCcccccceeee----ecceeeEEEEecCCEEEEEeCC-------------
Q 047728 320 DAAIVYCGSSD-----------GLVNFWERELNLSHGGVLR----GHKLAILCLVTAGNLVFSGSAD------------- 371 (474)
Q Consensus 320 ~~~~l~~~~~d-----------g~i~v~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~l~sgs~d------------- 371 (474)
++++++.|+.+ ..+.+||..+..-...... ...........++++++.|+.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~ 216 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYES 216 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceec
Confidence 55666666653 2467788776532110000 1111112233566666655432
Q ss_pred CcEEEEECCCCceEEE
Q 047728 372 MSICIWRRKENEHICL 387 (474)
Q Consensus 372 g~i~iwd~~~~~~~~~ 387 (474)
..+.+||..+.+...+
T Consensus 217 ~~v~~yd~~~~~W~~~ 232 (341)
T PLN02153 217 NAVQFFDPASGKWTEV 232 (341)
T ss_pred CceEEEEcCCCcEEec
Confidence 4688999988876543
No 487
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=76.42 E-value=8.8 Score=20.66 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=22.6
Q ss_pred cCEEEEEecCCEEEEEeCCCeEEEEe
Q 047728 149 GLVKAIVISNEKIFSGHQDGKIRVWK 174 (474)
Q Consensus 149 ~~V~~i~~~~~~l~s~~~dg~i~vwd 174 (474)
..|.+|+..+++++.+..-+.+|+|.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 45889999999999999999999974
No 488
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=74.90 E-value=7.1 Score=21.72 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=21.3
Q ss_pred CEEEEEECCCcEEEEEcCCcceeeee
Q 047728 233 NLLYSASWDKTFKVWRTSDYKCLESV 258 (474)
Q Consensus 233 ~~l~s~s~dg~i~iwd~~~~~~~~~~ 258 (474)
..++.++.++.+..+|.++|+.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36888889999999999998876543
No 489
>PRK13615 lipoprotein LpqB; Provisional
Probab=74.75 E-value=66 Score=32.57 Aligned_cols=148 Identities=14% Similarity=0.105 Sum_probs=77.5
Q ss_pred EEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCC-CceEEEEee
Q 047728 312 VTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKE-NEHICLSML 390 (474)
Q Consensus 312 v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~~ 390 (474)
..+++.++++..++....++.+.++..... ......+....--+|..++ .+.+.-.+...++..... +....+..-
T Consensus 336 ~~s~avS~dg~~~A~v~~~~~l~vg~~~~~--~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~ 412 (557)
T PRK13615 336 ADAATLSADGRQAAVRNASGVWSVGDGDRD--AVLLDTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVS 412 (557)
T ss_pred cccceEcCCCceEEEEcCCceEEEecCCCc--ceeeccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecc
Confidence 378899999999988887887777765522 1122333333334444555 565555444445444332 332222111
Q ss_pred cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC-CCCCCC-CcccccccCCCCCCCccccCCCCCcCCc
Q 047728 391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ-APPLVS-TTQQHPLEGHGVAPNSLPYAPSFSSQGR 468 (474)
Q Consensus 391 ~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~-~~~~~~-~~~~~~~~~~~~~v~~l~~~p~~s~Dg~ 468 (474)
-.-...|..+.+++||-... +++.....+.|.|=-+... ..+... ........+.. .+.++ +|..|++
T Consensus 413 ~~~~~~I~~lrvSrDG~R~A-----vi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~-~v~sl----~W~~~~~ 482 (557)
T PRK13615 413 WTATGRVVSLEVARDGARVL-----VQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPG-TPLDA----TWVDELD 482 (557)
T ss_pred ccCCCeeEEEEeCCCccEEE-----EEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcC-cceee----EEcCCCE
Confidence 12235799999999997321 2222334466777665542 211111 11111112233 66777 5666677
Q ss_pred eeec
Q 047728 469 ICQK 472 (474)
Q Consensus 469 ~l~~ 472 (474)
+++-
T Consensus 483 laVl 486 (557)
T PRK13615 483 VATL 486 (557)
T ss_pred EEEE
Confidence 7553
No 490
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.33 E-value=89 Score=30.87 Aligned_cols=96 Identities=18% Similarity=0.145 Sum_probs=53.1
Q ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe-cCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 047728 311 AVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT-AGNLVFSGSADMSICIWRRKENEHICLSM 389 (474)
Q Consensus 311 ~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 389 (474)
.|..+..++.|..++..+.+|.+..+=.+ ..-....+...+..|.|-.. -+..+++.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~-rwG~~s~~eDgk~~v~CRt~~i~~~~fts--------------------- 162 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPK-RWGKNSEFEDGKSTVNCRTTPVAERFFTS--------------------- 162 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchh-hcCccceecCCCceEEEEeecccceeecc---------------------
Confidence 47788899999999999999866554322 11122222222223333211 11111111
Q ss_pred ecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 390 ~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
. -.-.+..++|+|+.-.. ..|..-+.|..||+|++....
T Consensus 163 -s-~~ltl~Qa~WHP~S~~D-----~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 163 -S-TSLTLKQAAWHPSSILD-----PHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred -C-CceeeeeccccCCccCC-----ceEEEEecCcEEEEEecCCcc
Confidence 1 11235667888876100 056777789999999988753
No 491
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=74.04 E-value=80 Score=29.74 Aligned_cols=12 Identities=17% Similarity=0.194 Sum_probs=8.5
Q ss_pred CcEEEEEcCCcc
Q 047728 242 KTFKVWRTSDYK 253 (474)
Q Consensus 242 g~i~iwd~~~~~ 253 (474)
..+.+||..+.+
T Consensus 168 ~~v~~YDp~t~~ 179 (346)
T TIGR03547 168 KNVLSYDPSTNQ 179 (346)
T ss_pred ceEEEEECCCCc
Confidence 468888887654
No 492
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=74.01 E-value=24 Score=36.66 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=84.0
Q ss_pred EEEEeeCCCcEEEEeCC----cc--ccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCcccee
Q 047728 122 LLYTGSDSKNIRVWKNQ----RE--FSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDF 195 (474)
Q Consensus 122 ~l~tgs~dg~v~vwd~~----~~--~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 195 (474)
.+..|++++.|.|+... ++ ...+......+.++.+....+..|.-||++-.+--..... ....
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gS-wd~e---------- 617 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGS-WDGE---------- 617 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCC-CCCC----------
Confidence 56778888888888632 11 1223334566778887777777777777766543222111 0000
Q ss_pred eeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee---cCcceeEEEecC
Q 047728 196 IKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA---HDDAVNSIVAGF 272 (474)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~v~~v~~~~ 272 (474)
.......-..+|...++..| ++.++.+|.|.++...+......+.. |...|+++....
T Consensus 618 ----------------p~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~ 678 (925)
T KOG3522|consen 618 ----------------PNISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLD 678 (925)
T ss_pred ----------------CccccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeC
Confidence 00001113456777777654 56678899999999887666555544 456789999887
Q ss_pred CCeEEEeeCCCcEEEEEcc
Q 047728 273 DGLVFTGSADGTVKVWRRE 291 (474)
Q Consensus 273 ~~~l~~~~~dg~i~iwd~~ 291 (474)
.+..++-.....+++++.+
T Consensus 679 ~gVwvafasG~~~rlfhte 697 (925)
T KOG3522|consen 679 NGVWVAFASGDEERLFHTE 697 (925)
T ss_pred CceEEEEcCCCEEEEeccc
Confidence 7754444444556666544
No 493
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=73.99 E-value=88 Score=30.22 Aligned_cols=147 Identities=8% Similarity=0.016 Sum_probs=73.7
Q ss_pred eEEEecCCCeEEEeeCCCcEE-EEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc--
Q 047728 266 NSIVAGFDGLVFTGSADGTVK-VWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL-- 342 (474)
Q Consensus 266 ~~v~~~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~-- 342 (474)
..+...+++.++..+..|.+. -||-- .. . -..........+..+.+.+++..++++ ..|.+.. ....+.
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~---~-W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~ 313 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPG--QP---Y-WQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTE 313 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCC--Cc---c-eEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcc
Confidence 344556677444455555433 33321 00 0 011222334568899999999888766 5555443 222221
Q ss_pred ---ccceeeee-cceeeEEEEe-cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEE
Q 047728 343 ---SHGGVLRG-HKLAILCLVT-AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWIL 417 (474)
Q Consensus 343 ---~~~~~~~~-~~~~v~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l 417 (474)
........ ....+..+.+ +.+.++.++..|.+....-.............-....+.+.|.++++ .
T Consensus 314 ~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~---------g 384 (398)
T PLN00033 314 EDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKK---------G 384 (398)
T ss_pred cccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCc---------e
Confidence 11111111 1123444443 34455666667877766533333222111123345688999988776 4
Q ss_pred EEecCCCcEEEE
Q 047728 418 YSGSLDKSVKMW 429 (474)
Q Consensus 418 ~s~s~Dg~i~vw 429 (474)
+..+.+|.|.-|
T Consensus 385 ~~~G~~G~il~~ 396 (398)
T PLN00033 385 FVLGNDGVLLRY 396 (398)
T ss_pred EEEeCCcEEEEe
Confidence 455577876554
No 494
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.70 E-value=58 Score=27.97 Aligned_cols=174 Identities=13% Similarity=0.048 Sum_probs=83.8
Q ss_pred CCCEEEEEEC--CCcEEEEEcCCcceeeeeeecCccee--EEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeee
Q 047728 231 DQNLLYSASW--DKTFKVWRTSDYKCLESVIAHDDAVN--SIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLL 306 (474)
Q Consensus 231 ~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~v~--~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (474)
++.++.+.+. ...|++||+.+++.+.+..-....+. .+.-..+......=.+|.-..+|.++.+... ..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg-------~~ 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG-------RF 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhc-------cc
Confidence 4566666654 34699999999988766543211111 1111122233344467777788776433211 11
Q ss_pred cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-cceeeEEE---Ee-cCCEEEEEeCCCcEEEEECCC
Q 047728 307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-HKLAILCL---VT-AGNLVFSGSADMSICIWRRKE 381 (474)
Q Consensus 307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~---~~-~~~~l~sgs~dg~i~iwd~~~ 381 (474)
.-++.=+.++- ++..|+.+....+++.-|.++-.....+... ...+|..+ .+ +|...|-.-.+..|...|..+
T Consensus 128 ~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~s 205 (262)
T COG3823 128 SYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDS 205 (262)
T ss_pred ccCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCC
Confidence 11222233332 4445666655566777676544333222211 11222111 11 344433333333444444444
Q ss_pred CceEE----------EEeecCCccceEEEEEeeCCccccccceEEEEEe
Q 047728 382 NEHIC----------LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSG 420 (474)
Q Consensus 382 ~~~~~----------~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~ 420 (474)
++... ...-..|..-.+.+++.|+... +++||
T Consensus 206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r-------~~iTG 247 (262)
T COG3823 206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDR-------FLITG 247 (262)
T ss_pred CcEEEEEEccCCchhcCccccccccccceeecCcCCe-------EEEec
Confidence 44221 1122335567788999998752 67776
No 495
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=73.42 E-value=1.3 Score=22.76 Aligned_cols=10 Identities=50% Similarity=0.933 Sum_probs=8.5
Q ss_pred CCCcCCceee
Q 047728 462 SFSSQGRICQ 471 (474)
Q Consensus 462 ~~s~Dg~~l~ 471 (474)
.|||||++..
T Consensus 7 ~FSp~Grl~Q 16 (23)
T PF10584_consen 7 TFSPDGRLFQ 16 (23)
T ss_dssp SBBTTSSBHH
T ss_pred eECCCCeEEe
Confidence 6999999864
No 496
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=73.35 E-value=40 Score=35.12 Aligned_cols=219 Identities=12% Similarity=0.020 Sum_probs=108.0
Q ss_pred CEEEEEECCCcEEEEEcCCcceeee----eeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc
Q 047728 233 NLLYSASWDKTFKVWRTSDYKCLES----VIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ 308 (474)
Q Consensus 233 ~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 308 (474)
..+..|+.++.|.++.-..+..... .......+.++.+++. -+..|.-||++-.+-...... ....+.......
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~-Slgagl~dgt~a~y~rap~gS-wd~ep~~~~~~g 625 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG-SLGAGLIDGTLAVYGRAPSGS-WDGEPNISIPTG 625 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc-ccccCccCCccccccCCCCCC-CCCCCccccccC
Confidence 3577888899999987652221111 1123345666666543 455566666665553221111 000012233344
Q ss_pred cccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccce--eeeecceeeEEEEecCCEEEEEeCCC-cEEEEECCCCceE
Q 047728 309 ECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG--VLRGHKLAILCLVTAGNLVFSGSADM-SICIWRRKENEHI 385 (474)
Q Consensus 309 ~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sgs~dg-~i~iwd~~~~~~~ 385 (474)
..+|...++..| ++.++.+|.|.++...+...... ....|...|.++...+.-+..+-..| .+++++.++....
T Consensus 626 ~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl~hl 702 (925)
T KOG3522|consen 626 SLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETLWHL 702 (925)
T ss_pred Cccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccccCCc
Confidence 556777776544 55588999999998876533322 12234456666666555444444344 4455544433211
Q ss_pred E---E-----EeecCCc-cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCc
Q 047728 386 C---L-----SMLTGHS-GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNS 456 (474)
Q Consensus 386 ~---~-----~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~ 456 (474)
+ + .....|. -.|....|+. + +|..++.++..-.--+.-.+.+......+-...+|..+|..
T Consensus 703 qd~niaT~vt~~lP~~kllsv~~rl~c~-g---------l~~V~~~~~l~v~~~v~~~q~~k~~~~~~vS~~~~~~~vk~ 772 (925)
T KOG3522|consen 703 QDSNIATSVTVDLPFGKLLSVPGRLWCQ-G---------LLMVLTSLTLLVALPVPRLQDSKVTGRMMVSYHAVWSPVKF 772 (925)
T ss_pred cccccCcceeecCCCcccccCCCccccc-c---------eeEEeccceeEEEeeeeeccCCceeeeeeeecccccccchh
Confidence 1 0 0111111 1233334442 1 57777777765444444333333333344444556666655
Q ss_pred cccCCCCCcC
Q 047728 457 LPYAPSFSSQ 466 (474)
Q Consensus 457 l~~~p~~s~D 466 (474)
.+..-+|.++
T Consensus 773 ~~~~~~~H~~ 782 (925)
T KOG3522|consen 773 SAHATALHEK 782 (925)
T ss_pred hhhhhhhccc
Confidence 5555555444
No 497
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=72.74 E-value=16 Score=21.26 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=21.8
Q ss_pred ecCCccceEEEEEeeCCccccccceEEEEEecCC--CcEEEE
Q 047728 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD--KSVKMW 429 (474)
Q Consensus 390 ~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D--g~i~vw 429 (474)
+......-....|+||++. ++++...+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~-------i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKY-------IYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSE-------EEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCE-------EEEEecCCCCCCcCEE
Confidence 3344556788899999984 56666666 777776
No 498
>PRK10115 protease 2; Provisional
Probab=72.59 E-value=1.3e+02 Score=31.60 Aligned_cols=69 Identities=14% Similarity=0.016 Sum_probs=38.4
Q ss_pred eEEEecCCCCEEEEEECC------CcEEEEEcCCc--ceeeeeeecCccee-EEEecCCC-eEEEee---CCCcEEEEEc
Q 047728 224 SSLSMSEDQNLLYSASWD------KTFKVWRTSDY--KCLESVIAHDDAVN-SIVAGFDG-LVFTGS---ADGTVKVWRR 290 (474)
Q Consensus 224 ~~l~~~~~~~~l~s~s~d------g~i~iwd~~~~--~~~~~~~~~~~~v~-~v~~~~~~-~l~~~~---~dg~i~iwd~ 290 (474)
..++|.+|++.|+....+ ..|+.+++.++ +....+........ .+..+.++ .++..+ .++.+.+++.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 458999988776655432 36788888877 33333433233333 22334355 333332 2457888885
Q ss_pred cc
Q 047728 291 EL 292 (474)
Q Consensus 291 ~~ 292 (474)
..
T Consensus 255 ~~ 256 (686)
T PRK10115 255 EL 256 (686)
T ss_pred cC
Confidence 43
No 499
>PRK13614 lipoprotein LpqB; Provisional
Probab=72.53 E-value=88 Score=31.84 Aligned_cols=148 Identities=13% Similarity=0.102 Sum_probs=77.1
Q ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCC--cEEEEECC-CCce---
Q 047728 311 AVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADM--SICIWRRK-ENEH--- 384 (474)
Q Consensus 311 ~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg--~i~iwd~~-~~~~--- 384 (474)
.+.+.+.++++..++....++. .+|-...+......+.+....--+|..++ .+.+...+. .|..+.-. +++.
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~~ 421 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQA 421 (573)
T ss_pred cccceeecCCCceEEEecCCCc-EEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCCCceEEEEecCCCcccccc
Confidence 6788899999999888877662 33322223233334445444445555555 666655433 44444322 1110
Q ss_pred -EEEEeecCCcc-ceEEEEEeeCCccccccceEEEEEecCCCc--EEEEEccCCCCC--CCCCcccccccCCCCCCCccc
Q 047728 385 -ICLSMLTGHSG-PVKCLAVEKDDESLSREKRWILYSGSLDKS--VKMWRVSEQAPP--LVSTTQQHPLEGHGVAPNSLP 458 (474)
Q Consensus 385 -~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~--i~vw~~~~~~~~--~~~~~~~~~~~~~~~~v~~l~ 458 (474)
..........+ .|+.+.+++||-. .++....||. |.|=-+.....- ... .....+ +....+.++
T Consensus 422 ~~~~v~~~~l~g~~I~~lrvSrDG~R-------~Avi~~~~g~~~V~va~V~R~~~G~P~~L-~~~~~~-~~~~~~~sl- 491 (573)
T PRK13614 422 PTVTLTADWLAGRTVKELRVSREGVR-------ALVISEQNGKSRVQVAGIVRNEDGTPREL-TAPITL-AADSDADTG- 491 (573)
T ss_pred cceeecccccCCCeeEEEEECCCccE-------EEEEEEeCCccEEEEEEEEeCCCCCeEEc-cCceec-ccCCCccee-
Confidence 00111222333 4999999999974 3333434555 777655442211 111 111222 223566777
Q ss_pred cCCCCCcCCceeecc
Q 047728 459 YAPSFSSQGRICQKR 473 (474)
Q Consensus 459 ~~p~~s~Dg~~l~~~ 473 (474)
+|-.|+++++.+
T Consensus 492 ---~W~~~~sl~V~~ 503 (573)
T PRK13614 492 ---AWVGDSTVVVTK 503 (573)
T ss_pred ---EEcCCCEEEEEe
Confidence 566677776653
No 500
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=72.45 E-value=81 Score=29.09 Aligned_cols=86 Identities=12% Similarity=0.105 Sum_probs=51.8
Q ss_pred CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC--------------------CcEEEEEC
Q 047728 320 DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD--------------------MSICIWRR 379 (474)
Q Consensus 320 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d--------------------g~i~iwd~ 379 (474)
++++.++-+..|.+..+|.+++.........+ ....+.+.|+++++|-.. .-|.+.|+
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG--~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl 289 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPG--FTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDL 289 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEECCC--CCcccceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEEC
Confidence 67777778888999999987553322222222 223334447777665431 23566777
Q ss_pred CCCceEEEEeecCCccceEEEEEeeCCc
Q 047728 380 KENEHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
++++.+....+.+--..+.++++-|.-+
T Consensus 290 ~tG~vv~~l~feg~v~EifdV~vLPg~r 317 (335)
T TIGR03032 290 NSGDVVHWLRFEGVIEEIYDVAVLPGVR 317 (335)
T ss_pred CCCCEEEEEEeCCceeEEEEEEEecCCC
Confidence 7777555555666666777777777644
Done!