Query 047728
Match_columns 474
No_of_seqs 873 out of 2969
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 03:47:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 1.3E-44 4.5E-49 368.3 37.7 385 71-474 20-555 (611)
2 1vyh_C Platelet-activating fac 100.0 4E-44 1.4E-48 346.9 36.7 281 103-432 101-410 (410)
3 3ow8_A WD repeat-containing pr 100.0 6E-44 2E-48 333.9 36.3 285 99-432 21-320 (321)
4 1got_B GT-beta; complex (GTP-b 100.0 5.5E-43 1.9E-47 330.4 40.6 286 100-430 45-340 (340)
5 4gqb_B Methylosome protein 50; 100.0 1.7E-43 5.9E-48 333.4 35.9 284 108-435 28-333 (344)
6 2pbi_B Guanine nucleotide-bind 100.0 5.1E-42 1.8E-46 325.4 39.8 287 101-430 55-354 (354)
7 2ynn_A Coatomer subunit beta'; 100.0 3.7E-42 1.3E-46 319.5 34.9 268 140-461 5-280 (304)
8 2hes_X YDR267CP; beta-propelle 100.0 1.2E-41 3.9E-46 319.9 38.6 298 99-433 3-328 (330)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.4E-41 4.7E-46 321.4 39.1 297 100-437 5-339 (345)
10 3frx_A Guanine nucleotide-bind 100.0 1.2E-41 4.2E-46 318.2 37.7 286 99-434 6-318 (319)
11 3iz6_a 40S ribosomal protein R 100.0 1.6E-42 5.6E-47 332.3 32.4 296 99-434 55-376 (380)
12 2ynn_A Coatomer subunit beta'; 100.0 2.5E-41 8.5E-46 313.9 38.3 286 101-433 4-302 (304)
13 1nr0_A Actin interacting prote 100.0 1.2E-41 4.1E-46 346.5 39.0 356 98-473 178-598 (611)
14 4g56_B MGC81050 protein; prote 100.0 1.1E-41 3.8E-46 323.4 36.0 284 107-434 39-344 (357)
15 2xzm_R RACK1; ribosome, transl 100.0 2.8E-41 9.4E-46 319.2 38.5 286 100-434 11-341 (343)
16 4ery_A WD repeat-containing pr 100.0 4.5E-41 1.5E-45 313.4 39.2 286 99-432 12-311 (312)
17 3ow8_A WD repeat-containing pr 100.0 2.4E-41 8.1E-46 316.2 33.3 274 142-473 26-308 (321)
18 1vyh_C Platelet-activating fac 100.0 2E-41 6.7E-46 328.0 33.3 282 133-474 92-399 (410)
19 2ymu_A WD-40 repeat protein; u 100.0 3.4E-41 1.2E-45 341.3 36.4 309 100-474 252-568 (577)
20 1got_B GT-beta; complex (GTP-b 100.0 4E-40 1.4E-44 310.8 34.2 278 139-474 46-331 (340)
21 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-39 6E-44 318.1 38.6 311 102-474 110-426 (445)
22 4aow_A Guanine nucleotide-bind 100.0 8.6E-39 2.9E-43 301.3 38.9 290 99-435 27-339 (340)
23 1erj_A Transcriptional repress 100.0 1.5E-38 5.3E-43 306.0 39.7 286 105-434 59-390 (393)
24 2ymu_A WD-40 repeat protein; u 100.0 8.3E-39 2.8E-43 323.8 38.5 309 100-474 211-527 (577)
25 2pbi_B Guanine nucleotide-bind 100.0 1.3E-38 4.4E-43 302.0 34.4 278 139-474 55-345 (354)
26 2pm9_A Protein WEB1, protein t 100.0 2.5E-39 8.7E-44 313.8 29.1 283 111-437 13-341 (416)
27 1r5m_A SIR4-interacting protei 100.0 1.7E-38 5.9E-43 308.4 34.3 314 105-473 40-412 (425)
28 3zwl_B Eukaryotic translation 100.0 1.9E-37 6.4E-42 295.3 40.8 289 98-434 20-347 (369)
29 3vl1_A 26S proteasome regulato 100.0 9.7E-39 3.3E-43 310.3 31.3 315 114-474 62-408 (420)
30 3fm0_A Protein CIAO1; WDR39,SG 100.0 3E-38 1E-42 298.5 33.5 290 140-473 7-322 (345)
31 3v7d_B Cell division control p 100.0 9.8E-38 3.3E-42 307.4 38.0 301 101-460 112-442 (464)
32 3dm0_A Maltose-binding peripla 100.0 5.8E-38 2E-42 324.4 37.9 283 101-432 373-692 (694)
33 4ery_A WD repeat-containing pr 100.0 3.4E-38 1.2E-42 293.9 32.3 274 141-473 16-297 (312)
34 3iz6_a 40S ribosomal protein R 100.0 7.1E-39 2.4E-43 307.0 27.6 293 132-474 48-363 (380)
35 1sq9_A Antiviral protein SKI8; 100.0 8E-38 2.7E-42 301.4 35.1 291 100-434 6-396 (397)
36 1gxr_A ESG1, transducin-like e 100.0 6.7E-37 2.3E-41 287.8 40.0 281 101-432 42-336 (337)
37 2hes_X YDR267CP; beta-propelle 100.0 6.8E-38 2.3E-42 294.2 32.6 290 140-474 6-316 (330)
38 4g56_B MGC81050 protein; prote 100.0 1.8E-38 6.1E-43 301.3 28.1 295 121-473 17-330 (357)
39 3frx_A Guanine nucleotide-bind 100.0 8.1E-38 2.8E-42 292.2 31.8 283 141-474 10-305 (319)
40 3ei3_B DNA damage-binding prot 100.0 5.9E-37 2E-41 294.1 37.5 288 98-433 61-382 (383)
41 2xzm_R RACK1; ribosome, transl 100.0 1.5E-37 5E-42 293.7 32.5 289 140-474 13-328 (343)
42 4gqb_B Methylosome protein 50; 100.0 4.3E-38 1.5E-42 296.5 28.8 289 133-473 17-318 (344)
43 1gxr_A ESG1, transducin-like e 100.0 3.5E-37 1.2E-41 289.7 33.0 308 109-473 8-324 (337)
44 4e54_B DNA damage-binding prot 100.0 8.9E-38 3.1E-42 304.9 28.1 290 101-435 110-432 (435)
45 1erj_A Transcriptional repress 100.0 4.7E-37 1.6E-41 295.7 31.8 292 146-474 62-377 (393)
46 3k26_A Polycomb protein EED; W 100.0 4.9E-37 1.7E-41 292.2 31.5 287 104-432 12-365 (366)
47 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.4E-36 1.5E-40 293.9 38.1 285 96-434 145-443 (445)
48 2oaj_A Protein SNI1; WD40 repe 100.0 8.4E-37 2.9E-41 322.1 34.7 204 104-341 11-243 (902)
49 1p22_A F-BOX/WD-repeat protein 100.0 8.7E-37 3E-41 298.0 32.2 277 106-436 129-417 (435)
50 1pgu_A Actin interacting prote 100.0 1.3E-36 4.5E-41 309.8 34.9 377 70-473 19-601 (615)
51 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-36 8.2E-41 288.3 34.2 289 106-434 4-362 (372)
52 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-35 6.5E-40 275.0 38.5 285 97-436 5-299 (313)
53 3i2n_A WD repeat-containing pr 100.0 2.7E-36 9.4E-41 286.1 33.1 289 99-434 7-354 (357)
54 4h5i_A Guanine nucleotide-exch 100.0 5.3E-36 1.8E-40 285.1 34.1 285 111-434 15-344 (365)
55 4aez_A CDC20, WD repeat-contai 100.0 1E-35 3.5E-40 287.3 36.7 284 105-436 86-383 (401)
56 3gre_A Serine/threonine-protei 100.0 1.7E-36 5.8E-41 296.1 30.6 292 100-430 52-437 (437)
57 2pm9_A Protein WEB1, protein t 100.0 3.7E-37 1.3E-41 298.6 25.0 291 107-434 64-415 (416)
58 3dwl_C Actin-related protein 2 100.0 7.7E-37 2.6E-41 292.5 26.2 290 106-431 7-377 (377)
59 4a11_B DNA excision repair pro 100.0 3.3E-35 1.1E-39 283.8 37.4 295 100-437 33-369 (408)
60 3sfz_A APAF-1, apoptotic pepti 100.0 8.7E-36 3E-40 327.9 37.4 288 103-433 608-913 (1249)
61 3mkq_A Coatomer beta'-subunit; 100.0 3.6E-35 1.2E-39 309.3 39.0 287 101-434 4-303 (814)
62 3sfz_A APAF-1, apoptotic pepti 100.0 6.8E-36 2.3E-40 328.7 34.8 346 68-474 614-1104(1249)
63 4gga_A P55CDC, cell division c 100.0 5.2E-35 1.8E-39 284.1 35.5 277 113-436 108-398 (420)
64 3k26_A Polycomb protein EED; W 100.0 5.4E-36 1.8E-40 284.9 26.4 283 143-473 13-353 (366)
65 2pm7_B Protein transport prote 100.0 1.1E-34 3.6E-39 268.3 34.2 246 103-380 2-284 (297)
66 3vl1_A 26S proteasome regulato 100.0 7E-35 2.4E-39 283.1 34.4 276 116-433 105-419 (420)
67 4aow_A Guanine nucleotide-bind 100.0 5.3E-35 1.8E-39 275.4 32.4 285 141-474 31-325 (340)
68 2pm7_B Protein transport prote 100.0 8.9E-35 3E-39 268.8 33.0 250 142-433 3-285 (297)
69 2oaj_A Protein SNI1; WD40 repe 100.0 2.5E-35 8.6E-40 310.9 31.8 351 97-474 86-649 (902)
70 1pgu_A Actin interacting prote 100.0 2.2E-34 7.5E-39 293.4 37.7 339 108-474 16-560 (615)
71 1sq9_A Antiviral protein SKI8; 100.0 2.4E-35 8.3E-40 284.0 27.8 277 141-467 9-366 (397)
72 4ggc_A P55CDC, cell division c 100.0 8.2E-34 2.8E-38 264.6 36.7 276 113-435 28-317 (318)
73 1r5m_A SIR4-interacting protei 100.0 9.9E-35 3.4E-39 281.9 31.6 290 109-432 107-424 (425)
74 2j04_B YDR362CP, TAU91; beta p 100.0 3E-35 1E-39 291.0 28.3 283 104-434 201-518 (524)
75 3zwl_B Eukaryotic translation 100.0 4E-34 1.4E-38 272.2 34.7 277 142-473 26-333 (369)
76 2j04_B YDR362CP, TAU91; beta p 100.0 3.1E-35 1.1E-39 290.9 27.5 265 106-433 129-428 (524)
77 1yfq_A Cell cycle arrest prote 100.0 2.8E-34 9.5E-39 270.8 32.8 276 104-431 5-322 (342)
78 3bg1_A Protein SEC13 homolog; 100.0 5.2E-35 1.8E-39 272.8 27.4 255 105-392 8-305 (316)
79 3dw8_B Serine/threonine-protei 100.0 1.9E-34 6.3E-39 282.4 32.4 311 108-431 26-444 (447)
80 3dm0_A Maltose-binding peripla 100.0 2.2E-34 7.5E-39 297.6 32.8 250 143-435 377-634 (694)
81 3f3f_A Nucleoporin SEH1; struc 100.0 4.2E-34 1.5E-38 269.5 30.4 294 104-435 5-339 (351)
82 3bg1_A Protein SEC13 homolog; 100.0 1.1E-34 3.7E-39 270.6 25.2 250 143-433 8-293 (316)
83 1p22_A F-BOX/WD-repeat protein 100.0 2.6E-33 8.8E-38 273.5 35.7 263 144-459 129-393 (435)
84 3v7d_B Cell division control p 100.0 4.6E-33 1.6E-37 274.0 37.7 305 96-431 148-461 (464)
85 3i2n_A WD repeat-containing pr 100.0 1.2E-34 4.2E-39 274.7 25.4 282 143-473 13-340 (357)
86 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-33 6.2E-38 261.6 31.6 268 139-472 9-283 (313)
87 3ei3_B DNA damage-binding prot 100.0 6.2E-34 2.1E-38 273.0 29.2 273 141-474 66-371 (383)
88 3gre_A Serine/threonine-protei 100.0 9.7E-35 3.3E-39 283.7 23.7 267 117-436 36-362 (437)
89 3jrp_A Fusion protein of prote 100.0 1.4E-33 4.9E-38 269.5 31.1 249 102-382 3-288 (379)
90 3mmy_A MRNA export factor; mRN 100.0 2.1E-33 7.2E-38 267.1 32.0 290 96-434 25-347 (368)
91 1k8k_C P40, ARP2/3 complex 41 100.0 2.2E-33 7.4E-38 267.8 31.9 247 144-433 4-274 (372)
92 3mkq_A Coatomer beta'-subunit; 100.0 1.4E-33 4.7E-38 297.2 32.3 271 140-468 5-283 (814)
93 2aq5_A Coronin-1A; WD40 repeat 100.0 3.7E-33 1.3E-37 269.4 31.4 278 115-434 39-343 (402)
94 2j04_A TAU60, YPL007P, hypothe 100.0 4.2E-34 1.4E-38 276.2 23.9 264 110-432 15-296 (588)
95 3mmy_A MRNA export factor; mRN 100.0 6.4E-33 2.2E-37 263.8 30.5 277 139-474 30-334 (368)
96 4e54_B DNA damage-binding prot 100.0 4E-33 1.4E-37 272.1 29.3 276 142-474 113-419 (435)
97 4aez_A CDC20, WD repeat-contai 100.0 1.3E-32 4.4E-37 265.6 32.0 267 150-474 95-368 (401)
98 3jrp_A Fusion protein of prote 100.0 1.2E-32 4.2E-37 263.0 31.5 253 139-433 2-287 (379)
99 1yfq_A Cell cycle arrest prote 100.0 4.1E-33 1.4E-37 262.7 27.5 276 143-474 6-311 (342)
100 4gga_A P55CDC, cell division c 100.0 3.3E-32 1.1E-36 264.3 33.5 266 150-474 107-383 (420)
101 3dw8_B Serine/threonine-protei 100.0 9.9E-33 3.4E-37 270.1 27.5 257 146-435 26-375 (447)
102 3dwl_C Actin-related protein 2 100.0 7.7E-34 2.6E-38 271.7 17.9 246 144-432 7-280 (377)
103 4ggc_A P55CDC, cell division c 100.0 1.9E-31 6.6E-36 248.5 33.0 268 151-474 28-303 (318)
104 2aq5_A Coronin-1A; WD40 repeat 100.0 3.2E-32 1.1E-36 262.9 27.7 270 152-473 38-331 (402)
105 3jro_A Fusion protein of prote 100.0 4.6E-32 1.6E-36 282.0 28.2 249 103-383 2-287 (753)
106 3lrv_A PRE-mRNA-splicing facto 100.0 1.5E-31 5.2E-36 252.4 26.6 270 118-432 46-332 (343)
107 4h5i_A Guanine nucleotide-exch 100.0 2.8E-32 9.4E-37 259.4 21.5 276 148-474 14-331 (365)
108 3f3f_A Nucleoporin SEH1; struc 100.0 8.7E-31 3E-35 246.8 29.3 249 214-474 5-325 (351)
109 3vu4_A KMHSV2; beta-propeller 100.0 6.6E-31 2.3E-35 249.1 28.3 286 101-435 10-338 (355)
110 4a11_B DNA excision repair pro 100.0 2.5E-30 8.5E-35 249.5 31.7 298 129-473 22-352 (408)
111 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-29 4.3E-34 248.5 35.7 243 147-434 101-392 (450)
112 4gq1_A NUP37; propeller, trans 100.0 7E-31 2.4E-35 252.5 25.7 236 158-432 101-388 (393)
113 3jro_A Fusion protein of prote 100.0 1.1E-30 3.7E-35 271.7 26.8 251 142-434 3-286 (753)
114 2xyi_A Probable histone-bindin 100.0 7.6E-30 2.6E-34 248.4 30.4 261 142-434 122-411 (430)
115 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.1E-30 2.4E-34 250.2 29.4 228 217-461 99-364 (450)
116 2xyi_A Probable histone-bindin 100.0 8.2E-30 2.8E-34 248.2 29.6 253 100-382 118-411 (430)
117 3vu4_A KMHSV2; beta-propeller 100.0 5.5E-29 1.9E-33 235.9 29.6 241 137-435 8-273 (355)
118 2w18_A PALB2, fancn, partner a 100.0 3.5E-29 1.2E-33 227.5 26.7 288 98-431 23-355 (356)
119 3lrv_A PRE-mRNA-splicing facto 100.0 5.3E-30 1.8E-34 241.8 21.6 227 158-435 48-294 (343)
120 1l0q_A Surface layer protein; 100.0 9.3E-28 3.2E-32 230.6 35.8 263 121-435 3-277 (391)
121 3bws_A Protein LP49; two-domai 100.0 1.4E-27 4.6E-32 232.7 34.6 281 101-433 114-432 (433)
122 4gq1_A NUP37; propeller, trans 100.0 1.1E-29 3.6E-34 244.2 19.2 237 219-474 88-378 (393)
123 2j04_A TAU60, YPL007P, hypothe 100.0 9.9E-29 3.4E-33 238.8 20.7 249 146-473 13-285 (588)
124 1l0q_A Surface layer protein; 100.0 3E-26 1E-30 220.0 36.5 293 98-435 20-344 (391)
125 3bws_A Protein LP49; two-domai 100.0 8.6E-28 2.9E-32 234.1 25.7 290 125-472 94-417 (433)
126 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.8E-27 1.3E-31 227.8 29.4 282 120-462 75-408 (415)
127 1nir_A Nitrite reductase; hemo 100.0 3.4E-26 1.2E-30 227.9 27.6 306 113-472 142-495 (543)
128 2w18_A PALB2, fancn, partner a 99.9 9E-24 3.1E-28 192.0 27.5 205 219-474 110-345 (356)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.3E-23 4.4E-28 203.0 27.0 259 104-407 111-410 (415)
130 3u4y_A Uncharacterized protein 99.9 2.1E-22 7.1E-27 188.6 34.1 271 120-434 10-305 (331)
131 1ri6_A Putative isomerase YBHE 99.9 1.5E-22 5.1E-27 190.3 30.3 271 122-433 7-308 (343)
132 2ecf_A Dipeptidyl peptidase IV 99.9 5.1E-23 1.8E-27 214.3 29.4 300 112-472 38-441 (741)
133 2ojh_A Uncharacterized protein 99.9 4.5E-23 1.5E-27 189.3 23.3 252 163-473 17-289 (297)
134 1xfd_A DIP, dipeptidyl aminope 99.9 4.4E-23 1.5E-27 214.2 23.2 308 116-472 24-426 (723)
135 2ojh_A Uncharacterized protein 99.9 3.1E-22 1E-26 183.7 23.3 252 125-424 17-293 (297)
136 1k32_A Tricorn protease; prote 99.9 1.3E-21 4.5E-26 210.9 29.9 334 103-473 45-489 (1045)
137 1nir_A Nitrite reductase; hemo 99.9 4.9E-21 1.7E-25 190.8 31.8 269 157-473 148-438 (543)
138 2z3z_A Dipeptidyl aminopeptida 99.9 5.9E-22 2E-26 205.2 25.7 290 120-472 35-417 (706)
139 1ri6_A Putative isomerase YBHE 99.9 1.4E-20 4.8E-25 176.7 28.3 262 161-472 8-293 (343)
140 1k32_A Tricorn protease; prote 99.9 5.9E-21 2E-25 205.8 27.6 304 110-473 14-438 (1045)
141 1pby_B Quinohemoprotein amine 99.9 8.8E-21 3E-25 177.6 23.9 265 121-435 2-312 (337)
142 3vgz_A Uncharacterized protein 99.9 4.6E-20 1.6E-24 174.1 27.9 262 148-471 40-329 (353)
143 2ecf_A Dipeptidyl peptidase IV 99.9 6.3E-21 2.2E-25 198.5 21.9 287 148-471 36-395 (741)
144 3hfq_A Uncharacterized protein 99.9 2.3E-19 8E-24 169.0 30.6 266 128-433 14-317 (347)
145 3u4y_A Uncharacterized protein 99.9 5.8E-20 2E-24 171.9 25.7 228 159-435 11-254 (331)
146 3vgz_A Uncharacterized protein 99.9 5.4E-19 1.8E-23 166.7 32.2 276 110-423 40-334 (353)
147 1pby_B Quinohemoprotein amine 99.9 4.1E-20 1.4E-24 173.1 21.0 251 159-472 2-296 (337)
148 3hfq_A Uncharacterized protein 99.9 4.3E-19 1.5E-23 167.3 27.6 236 219-472 38-302 (347)
149 2oit_A Nucleoporin 214KDA; NH2 99.9 4.5E-19 1.5E-23 171.8 28.3 297 112-433 40-405 (434)
150 3scy_A Hypothetical bacterial 99.8 7.6E-18 2.6E-22 159.6 33.8 267 128-433 25-337 (361)
151 1z68_A Fibroblast activation p 99.8 8.5E-20 2.9E-24 189.3 20.7 307 115-471 22-425 (719)
152 2z3z_A Dipeptidyl aminopeptida 99.8 5E-19 1.7E-23 183.2 26.5 291 111-435 82-437 (706)
153 2oit_A Nucleoporin 214KDA; NH2 99.8 1.4E-19 4.9E-24 175.4 20.5 202 220-434 36-279 (434)
154 1xfd_A DIP, dipeptidyl aminope 99.8 9E-19 3.1E-23 181.8 27.4 278 100-407 47-422 (723)
155 3o4h_A Acylamino-acid-releasin 99.8 1.2E-18 4E-23 176.2 26.1 262 110-432 21-314 (582)
156 1jmx_B Amine dehydrogenase; ox 99.8 2.2E-18 7.5E-23 162.2 24.5 226 158-434 11-326 (349)
157 3scy_A Hypothetical bacterial 99.8 1.8E-17 6.1E-22 157.0 29.3 236 219-472 48-322 (361)
158 3o4h_A Acylamino-acid-releasin 99.8 2.9E-19 9.8E-24 180.7 17.1 251 148-473 21-299 (582)
159 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.2E-17 1.1E-21 155.6 27.4 242 149-434 40-342 (365)
160 1jmx_B Amine dehydrogenase; ox 99.8 1.4E-17 4.9E-22 156.5 22.4 236 118-384 9-328 (349)
161 2oiz_A Aromatic amine dehydrog 99.8 8.3E-17 2.8E-21 152.2 27.4 288 128-468 29-360 (361)
162 3pe7_A Oligogalacturonate lyas 99.8 3.1E-17 1.1E-21 156.8 22.3 279 139-473 21-368 (388)
163 3pe7_A Oligogalacturonate lyas 99.8 2.2E-16 7.5E-21 151.0 27.7 282 102-433 22-382 (388)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 1E-15 3.5E-20 145.2 28.9 234 221-473 40-327 (365)
165 4a5s_A Dipeptidyl peptidase 4 99.7 2.6E-16 9E-21 163.4 23.0 304 116-471 24-431 (740)
166 3azo_A Aminopeptidase; POP fam 99.7 1.8E-15 6.3E-20 155.2 28.7 286 104-432 17-366 (662)
167 1z68_A Fibroblast activation p 99.7 2.5E-17 8.6E-22 170.8 14.1 223 225-471 20-327 (719)
168 1q7f_A NHL, brain tumor CG1071 99.7 1.5E-14 5E-19 132.1 29.1 241 146-434 27-281 (286)
169 4a5s_A Dipeptidyl peptidase 4 99.7 2.3E-16 8E-21 163.8 18.9 231 222-471 18-334 (740)
170 3fvz_A Peptidyl-glycine alpha- 99.7 3.1E-14 1.1E-18 132.8 27.1 262 110-434 23-323 (329)
171 3c5m_A Oligogalacturonate lyas 99.7 9.6E-16 3.3E-20 146.7 16.6 220 225-473 85-368 (396)
172 3fvz_A Peptidyl-glycine alpha- 99.7 1.5E-14 5E-19 135.0 23.8 240 219-473 22-309 (329)
173 1q7f_A NHL, brain tumor CG1071 99.6 2.6E-13 8.8E-18 123.8 29.6 230 110-382 29-281 (286)
174 3c5m_A Oligogalacturonate lyas 99.6 6.5E-15 2.2E-19 140.9 19.5 283 115-432 42-381 (396)
175 2dg1_A DRP35, lactonase; beta 99.6 9.5E-14 3.3E-18 129.7 26.9 252 113-407 8-292 (333)
176 2gop_A Trilobed protease; beta 99.6 2.3E-13 7.9E-18 127.8 28.3 250 114-432 18-330 (347)
177 3azo_A Aminopeptidase; POP fam 99.6 4.2E-14 1.4E-18 145.1 23.6 265 118-432 88-410 (662)
178 1qks_A Cytochrome CD1 nitrite 99.6 4.3E-13 1.5E-17 133.2 29.4 275 113-434 160-478 (567)
179 3dsm_A Uncharacterized protein 99.6 2.1E-13 7.3E-18 127.0 25.1 256 127-434 14-302 (328)
180 2xdw_A Prolyl endopeptidase; a 99.6 4.7E-13 1.6E-17 138.3 28.8 231 219-471 123-395 (710)
181 2oiz_A Aromatic amine dehydrog 99.6 3.4E-13 1.2E-17 127.3 25.4 270 101-407 42-360 (361)
182 2gop_A Trilobed protease; beta 99.6 2E-13 7E-18 128.1 23.7 183 222-433 60-291 (347)
183 3no2_A Uncharacterized protein 99.6 4.1E-13 1.4E-17 121.5 24.6 210 158-407 5-225 (276)
184 2z2n_A Virginiamycin B lyase; 99.6 2.7E-11 9.1E-16 110.8 36.6 275 108-434 12-296 (299)
185 3e5z_A Putative gluconolactona 99.6 7.6E-13 2.6E-17 121.4 26.0 234 141-433 20-284 (296)
186 3e5z_A Putative gluconolactona 99.6 5.7E-13 1.9E-17 122.2 22.7 225 218-471 25-272 (296)
187 2dg1_A DRP35, lactonase; beta 99.6 2.6E-12 9E-17 119.8 26.7 200 219-432 43-262 (333)
188 1rwi_B Serine/threonine-protei 99.5 1.2E-12 4E-17 118.2 23.2 197 221-434 67-265 (270)
189 2z2n_A Virginiamycin B lyase; 99.5 2.5E-11 8.5E-16 111.1 31.2 263 147-472 13-282 (299)
190 2xdw_A Prolyl endopeptidase; a 99.5 3.1E-12 1.1E-16 132.1 28.0 242 146-435 122-416 (710)
191 2bkl_A Prolyl endopeptidase; m 99.5 1E-12 3.5E-17 135.4 24.0 272 113-435 72-399 (695)
192 2bkl_A Prolyl endopeptidase; m 99.5 1.6E-12 5.4E-17 134.0 24.3 230 219-471 119-378 (695)
193 1rwi_B Serine/threonine-protei 99.5 3.2E-12 1.1E-16 115.4 22.1 225 222-473 25-251 (270)
194 1qks_A Cytochrome CD1 nitrite 99.5 1.1E-10 3.8E-15 116.0 32.7 235 158-435 167-423 (567)
195 2qc5_A Streptogramin B lactona 99.5 5E-10 1.7E-14 102.3 33.4 270 110-431 19-298 (300)
196 3sjl_D Methylamine dehydrogena 99.5 1.1E-10 3.7E-15 109.1 28.6 277 117-435 41-365 (386)
197 3dsm_A Uncharacterized protein 99.4 8.6E-11 2.9E-15 109.3 27.7 231 113-383 46-303 (328)
198 2qc5_A Streptogramin B lactona 99.4 5.2E-10 1.8E-14 102.2 32.6 266 147-473 18-289 (300)
199 3no2_A Uncharacterized protein 99.4 6.7E-12 2.3E-16 113.5 19.5 185 231-436 4-198 (276)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.8E-11 6.3E-16 112.9 22.9 230 219-472 16-285 (314)
201 1yr2_A Prolyl oligopeptidase; 99.4 5E-11 1.7E-15 123.7 27.8 230 219-471 161-422 (741)
202 1yr2_A Prolyl oligopeptidase; 99.4 4.6E-11 1.6E-15 124.0 27.0 276 112-435 110-443 (741)
203 2mad_H Methylamine dehydrogena 99.4 6E-10 2E-14 105.2 32.1 274 118-435 30-352 (373)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 3E-10 1E-14 104.7 29.1 239 112-382 19-300 (314)
205 1xip_A Nucleoporin NUP159; bet 99.4 1.2E-11 4E-16 116.0 17.9 171 114-326 43-230 (388)
206 3hrp_A Uncharacterized protein 99.4 2.4E-10 8.1E-15 109.5 26.7 233 149-431 131-408 (409)
207 1xip_A Nucleoporin NUP159; bet 99.4 4.4E-11 1.5E-15 112.1 19.0 168 222-407 39-226 (388)
208 3g4e_A Regucalcin; six bladed 99.3 1.2E-09 4.2E-14 99.9 28.4 214 150-407 14-254 (297)
209 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1.2E-09 4.1E-14 103.6 28.4 267 114-430 97-375 (376)
210 3q7m_A Lipoprotein YFGL, BAMB; 99.3 4.7E-09 1.6E-13 99.5 31.9 269 118-436 51-340 (376)
211 3c75_H MADH, methylamine dehyd 99.3 2.1E-09 7.3E-14 102.2 27.6 275 119-435 83-404 (426)
212 3hrp_A Uncharacterized protein 99.3 4.2E-10 1.4E-14 107.8 22.5 198 220-434 130-355 (409)
213 3g4e_A Regucalcin; six bladed 99.3 6.8E-09 2.3E-13 94.9 28.7 222 120-370 25-261 (297)
214 1yiq_A Quinohemoprotein alcoho 99.2 1.8E-09 6E-14 110.4 25.1 279 119-436 69-508 (689)
215 3dr2_A Exported gluconolactona 99.2 4.1E-09 1.4E-13 96.8 24.9 232 105-373 39-299 (305)
216 1kb0_A Quinohemoprotein alcoho 99.2 8.9E-10 3E-14 112.4 22.0 274 119-436 76-510 (677)
217 3hxj_A Pyrrolo-quinoline quino 99.2 2.1E-09 7.2E-14 99.7 21.4 264 110-434 59-325 (330)
218 1yiq_A Quinohemoprotein alcoho 99.2 9.8E-09 3.4E-13 104.9 27.5 283 117-408 118-531 (689)
219 2ghs_A AGR_C_1268P; regucalcin 99.2 2.5E-08 8.7E-13 92.4 27.9 210 152-407 52-284 (326)
220 1kb0_A Quinohemoprotein alcoho 99.2 1.6E-08 5.4E-13 103.2 28.7 307 116-433 124-567 (677)
221 2qe8_A Uncharacterized protein 99.2 1.6E-08 5.5E-13 94.5 26.5 264 111-429 17-317 (343)
222 3dr2_A Exported gluconolactona 99.2 1.1E-08 3.6E-13 94.0 24.7 221 147-424 43-298 (305)
223 3iuj_A Prolyl endopeptidase; h 99.2 1.8E-09 6.1E-14 111.0 21.3 203 219-434 127-360 (693)
224 2mad_H Methylamine dehydrogena 99.2 1.2E-07 4E-12 89.5 31.5 248 100-385 57-354 (373)
225 3sjl_D Methylamine dehydrogena 99.2 6E-09 2.1E-13 97.3 22.2 270 98-405 67-384 (386)
226 3hxj_A Pyrrolo-quinoline quino 99.2 6.6E-10 2.3E-14 103.2 15.6 254 116-431 25-282 (330)
227 3iuj_A Prolyl endopeptidase; h 99.1 5.9E-09 2E-13 107.1 23.4 239 147-435 127-407 (693)
228 2ghs_A AGR_C_1268P; regucalcin 99.1 4.9E-08 1.7E-12 90.5 27.5 219 116-370 56-291 (326)
229 1mda_H Methylamine dehydrogena 99.1 5.6E-09 1.9E-13 97.6 19.5 255 131-435 47-348 (368)
230 2hz6_A Endoplasmic reticulum t 99.1 5.2E-11 1.8E-15 112.6 5.8 185 155-384 6-195 (369)
231 3c75_H MADH, methylamine dehyd 99.0 2.5E-08 8.7E-13 94.7 19.3 250 158-471 84-386 (426)
232 2hz6_A Endoplasmic reticulum t 99.0 2.1E-10 7.3E-15 108.3 4.6 184 231-436 8-195 (369)
233 2qe8_A Uncharacterized protein 99.0 8.8E-09 3E-13 96.3 15.2 233 221-473 17-308 (343)
234 2ece_A 462AA long hypothetical 99.0 1.8E-07 6.3E-12 87.9 23.6 192 230-434 93-353 (462)
235 1npe_A Nidogen, entactin; glyc 98.9 2.7E-06 9.2E-11 76.2 27.5 220 222-467 37-266 (267)
236 4a2l_A BT_4663, two-component 98.9 1.7E-05 5.7E-10 82.9 36.4 284 113-434 175-481 (795)
237 1fwx_A Nitrous oxide reductase 98.8 1.3E-07 4.4E-12 92.2 18.1 253 152-473 90-405 (595)
238 4a2l_A BT_4663, two-component 98.8 1E-05 3.5E-10 84.5 33.7 280 111-434 310-615 (795)
239 1npe_A Nidogen, entactin; glyc 98.8 1.1E-05 3.8E-10 72.1 28.4 217 149-407 36-263 (267)
240 1kv9_A Type II quinohemoprotei 98.8 7E-07 2.4E-11 90.9 22.7 273 120-436 66-491 (668)
241 1mda_H Methylamine dehydrogena 98.8 2.2E-07 7.4E-12 86.8 17.0 231 169-469 47-327 (368)
242 1kv9_A Type II quinohemoprotei 98.8 4.1E-06 1.4E-10 85.3 27.6 262 117-385 114-492 (668)
243 2ece_A 462AA long hypothetical 98.8 4.3E-06 1.5E-10 78.7 25.3 221 119-369 94-399 (462)
244 2iwa_A Glutamine cyclotransfer 98.8 2.6E-06 8.8E-11 75.2 22.1 196 222-434 22-238 (266)
245 2ad6_A Methanol dehydrogenase 98.7 2.2E-06 7.5E-11 85.5 24.3 243 154-437 111-498 (571)
246 2ad6_A Methanol dehydrogenase 98.7 7.2E-06 2.4E-10 81.8 27.4 266 117-385 112-498 (571)
247 1w6s_A Methanol dehydrogenase 98.7 2.2E-05 7.4E-10 78.4 28.7 280 123-407 124-528 (599)
248 3v9f_A Two-component system se 98.7 8.2E-05 2.8E-09 77.5 33.8 284 111-434 163-479 (781)
249 3v9f_A Two-component system se 98.7 4.6E-05 1.6E-09 79.3 31.8 284 111-434 258-569 (781)
250 2fp8_A Strictosidine synthase; 98.6 2.7E-05 9.1E-10 71.7 25.1 194 221-434 80-314 (322)
251 1fwx_A Nitrous oxide reductase 98.6 4.5E-05 1.5E-09 74.5 27.1 262 119-389 100-439 (595)
252 3nol_A Glutamine cyclotransfer 98.6 7.8E-06 2.7E-10 71.3 19.4 175 223-407 45-237 (262)
253 1flg_A Protein (quinoprotein e 98.5 7.1E-05 2.4E-09 74.7 27.5 181 225-407 250-541 (582)
254 2fp8_A Strictosidine synthase; 98.5 5.3E-05 1.8E-09 69.7 24.9 231 118-383 28-315 (322)
255 1flg_A Protein (quinoprotein e 98.5 3E-05 1E-09 77.4 24.3 32 155-186 114-145 (582)
256 1w6s_A Methanol dehydrogenase 98.5 1.2E-05 4.1E-10 80.2 21.3 151 161-345 124-347 (599)
257 3nok_A Glutaminyl cyclase; bet 98.5 1.8E-05 6.3E-10 69.0 19.0 180 223-421 57-254 (268)
258 1k3i_A Galactose oxidase precu 98.5 2.2E-05 7.7E-10 79.9 22.5 267 114-422 191-530 (656)
259 2iwa_A Glutamine cyclotransfer 98.4 2.5E-05 8.7E-10 68.9 18.7 167 253-436 10-184 (266)
260 3mbr_X Glutamine cyclotransfer 98.4 0.0002 6.9E-09 61.8 23.0 192 222-432 22-232 (243)
261 3v65_B Low-density lipoprotein 98.4 0.0013 4.5E-08 62.0 30.6 197 220-434 115-319 (386)
262 3v64_C Agrin; beta propeller, 98.3 0.002 7E-08 59.7 31.0 197 221-434 73-276 (349)
263 1k3i_A Galactose oxidase precu 98.3 1.5E-05 5.2E-10 81.2 17.4 198 223-434 245-498 (656)
264 2p4o_A Hypothetical protein; p 98.3 0.001 3.6E-08 60.4 28.1 182 222-407 73-270 (306)
265 3qqz_A Putative uncharacterize 98.3 0.00071 2.4E-08 59.3 25.1 201 218-429 24-249 (255)
266 2p4o_A Hypothetical protein; p 98.3 0.0012 4.1E-08 60.1 27.2 236 98-371 20-278 (306)
267 3nok_A Glutaminyl cyclase; bet 98.2 0.00013 4.5E-09 63.6 19.0 191 101-328 44-253 (268)
268 3tc9_A Hypothetical hydrolase; 98.2 0.0005 1.7E-08 65.9 25.0 197 220-432 178-429 (430)
269 1ijq_A LDL receptor, low-densi 98.2 0.0031 1.1E-07 57.6 32.6 200 220-435 29-240 (316)
270 3nol_A Glutamine cyclotransfer 98.2 0.00036 1.2E-08 60.9 20.8 181 151-370 45-244 (262)
271 3p5b_L Low density lipoprotein 98.2 0.0049 1.7E-07 58.3 31.8 201 219-435 110-322 (400)
272 2xbg_A YCF48-like protein; pho 98.2 0.0046 1.6E-07 56.8 30.9 268 110-430 35-319 (327)
273 2xe4_A Oligopeptidase B; hydro 98.1 0.00034 1.2E-08 72.3 22.2 193 222-432 175-397 (751)
274 3v64_C Agrin; beta propeller, 98.1 0.0058 2E-07 56.6 28.2 213 131-383 54-277 (349)
275 3qqz_A Putative uncharacterize 98.0 0.0035 1.2E-07 54.8 23.6 201 146-379 24-251 (255)
276 3v65_B Low-density lipoprotein 98.0 0.0054 1.9E-07 57.7 26.8 222 122-383 89-320 (386)
277 3mbr_X Glutamine cyclotransfer 98.0 0.0025 8.6E-08 55.0 22.1 182 149-369 21-222 (243)
278 3amr_A 3-phytase; beta-propell 98.0 0.002 6.9E-08 58.7 22.1 195 231-432 39-262 (355)
279 4hw6_A Hypothetical protein, I 98.0 0.0046 1.6E-07 59.1 25.8 231 151-432 141-432 (433)
280 2xbg_A YCF48-like protein; pho 98.0 0.0094 3.2E-07 54.7 27.0 229 111-379 80-320 (327)
281 3m0c_C LDL receptor, low-densi 97.9 0.016 5.5E-07 59.7 30.3 200 219-434 422-633 (791)
282 2p9w_A MAL S 1 allergenic prot 97.9 0.003 1E-07 57.1 21.2 205 152-383 16-267 (334)
283 3sov_A LRP-6, low-density lipo 97.9 0.014 4.6E-07 53.3 28.2 196 222-435 36-240 (318)
284 3p5b_L Low density lipoprotein 97.9 0.019 6.4E-07 54.3 31.1 237 130-403 92-340 (400)
285 3kya_A Putative phosphatase; s 97.9 0.015 5.2E-07 56.0 27.2 201 221-434 186-476 (496)
286 2p9w_A MAL S 1 allergenic prot 97.8 0.0075 2.6E-07 54.4 21.6 159 223-382 15-216 (334)
287 2xe4_A Oligopeptidase B; hydro 97.8 0.0023 7.8E-08 66.1 20.9 235 114-385 179-462 (751)
288 3sov_A LRP-6, low-density lipo 97.8 0.023 8E-07 51.7 26.6 217 130-384 13-241 (318)
289 2ism_A Putative oxidoreductase 97.7 0.0052 1.8E-07 57.0 21.2 235 220-472 30-331 (352)
290 2vpj_A Kelch-like protein 12; 97.7 0.024 8.3E-07 51.0 24.9 150 231-387 112-284 (301)
291 3amr_A 3-phytase; beta-propell 97.7 0.028 9.5E-07 51.2 25.3 141 241-383 98-266 (355)
292 1n7d_A LDL receptor, low-densi 97.7 0.00054 1.8E-08 69.9 14.8 198 221-434 406-615 (699)
293 4hw6_A Hypothetical protein, I 97.7 0.0052 1.8E-07 58.8 20.4 196 221-431 139-372 (433)
294 1ijq_A LDL receptor, low-densi 97.7 0.033 1.1E-06 50.7 29.5 216 130-383 10-240 (316)
295 4a0p_A LRP6, LRP-6, low-densit 97.7 0.063 2.2E-06 53.9 32.0 197 221-435 37-239 (628)
296 3m0c_C LDL receptor, low-densi 97.6 0.066 2.3E-06 55.1 29.4 219 130-383 404-634 (791)
297 3tc9_A Hypothetical hydrolase; 97.6 0.033 1.1E-06 53.1 25.3 141 120-292 149-301 (430)
298 3ii7_A Kelch-like protein 7; p 97.6 0.039 1.3E-06 49.8 25.3 154 231-391 101-282 (306)
299 3sre_A PON1, serum paraoxonase 97.6 0.005 1.7E-07 56.8 18.2 180 222-407 51-279 (355)
300 3ei3_A DNA damage-binding prot 97.6 0.13 4.4E-06 55.4 37.0 301 112-434 515-914 (1158)
301 2xzh_A Clathrin heavy chain 1; 97.5 0.048 1.6E-06 48.9 27.0 197 226-436 72-293 (365)
302 2vpj_A Kelch-like protein 12; 97.5 0.017 6E-07 52.0 20.8 186 231-434 62-279 (301)
303 2xn4_A Kelch-like protein 2; s 97.5 0.027 9.1E-07 50.8 22.0 188 231-434 61-277 (302)
304 1zgk_A Kelch-like ECH-associat 97.4 0.048 1.6E-06 49.3 22.4 151 231-389 121-295 (308)
305 3ii7_A Kelch-like protein 7; p 97.4 0.058 2E-06 48.6 22.7 187 231-434 55-273 (306)
306 2xn4_A Kelch-like protein 2; s 97.4 0.061 2.1E-06 48.4 22.6 148 231-385 108-280 (302)
307 3ei3_A DNA damage-binding prot 97.3 0.25 8.4E-06 53.3 34.0 223 149-407 514-749 (1158)
308 1zgk_A Kelch-like ECH-associat 97.3 0.05 1.7E-06 49.2 20.7 186 231-434 70-288 (308)
309 2ism_A Putative oxidoreductase 97.2 0.13 4.5E-06 47.5 26.6 101 150-279 32-151 (352)
310 3s94_A LRP-6, low-density lipo 97.2 0.23 7.9E-06 49.7 27.0 199 220-436 39-246 (619)
311 3a9g_A Putative uncharacterize 97.1 0.067 2.3E-06 49.5 20.4 243 220-472 28-328 (354)
312 1n7d_A LDL receptor, low-densi 97.1 0.0039 1.3E-07 63.6 12.5 173 223-404 455-635 (699)
313 1bpo_A Protein (clathrin); cla 97.1 0.2 6.7E-06 46.9 27.5 198 225-436 70-292 (494)
314 3kya_A Putative phosphatase; s 97.0 0.063 2.2E-06 51.7 19.1 159 221-380 139-340 (496)
315 3pbp_A Nucleoporin NUP82; beta 97.0 0.11 3.7E-06 48.5 19.7 113 222-336 67-208 (452)
316 4asc_A Kelch repeat and BTB do 96.9 0.21 7.2E-06 45.1 22.0 153 230-388 44-228 (315)
317 3ott_A Two-component system se 96.9 0.51 1.7E-05 48.6 32.2 243 112-383 280-547 (758)
318 3ott_A Two-component system se 96.9 0.52 1.8E-05 48.5 33.9 304 111-434 63-402 (758)
319 2uvk_A YJHT; unknown function, 96.8 0.12 4.2E-06 47.6 19.7 148 242-391 168-352 (357)
320 3s94_A LRP-6, low-density lipo 96.8 0.49 1.7E-05 47.4 30.6 191 112-341 41-244 (619)
321 3das_A Putative oxidoreductase 96.8 0.31 1E-05 44.6 25.0 238 219-472 30-324 (347)
322 3sre_A PON1, serum paraoxonase 96.7 0.14 4.7E-06 47.2 18.4 158 264-433 51-252 (355)
323 4a0p_A LRP6, LRP-6, low-densit 96.6 0.66 2.3E-05 46.4 29.6 194 149-383 37-239 (628)
324 3qhy_B Beta-lactamase inhibito 96.5 0.41 1.4E-05 42.5 23.4 224 149-434 24-247 (282)
325 2woz_A Kelch repeat and BTB do 96.4 0.53 1.8E-05 42.5 21.1 190 229-434 54-288 (318)
326 4asc_A Kelch repeat and BTB do 96.3 0.56 1.9E-05 42.3 21.3 151 231-387 98-283 (315)
327 2g8s_A Glucose/sorbosone dehyd 96.3 0.66 2.3E-05 42.7 22.1 242 220-472 17-339 (353)
328 3pbp_A Nucleoporin NUP82; beta 96.3 0.43 1.5E-05 44.5 18.6 148 229-377 29-208 (452)
329 2be1_A Serine/threonine-protei 96.1 0.082 2.8E-06 48.2 13.1 109 158-295 10-133 (339)
330 1bpo_A Protein (clathrin); cla 96.1 0.9 3.1E-05 42.5 27.0 234 117-382 74-332 (494)
331 1tl2_A L10, protein (tachylect 96.1 0.11 3.6E-06 43.8 12.2 107 221-335 41-158 (236)
332 2xzh_A Clathrin heavy chain 1; 95.8 1 3.6E-05 40.4 27.9 253 129-434 48-333 (365)
333 3qhy_B Beta-lactamase inhibito 95.7 1.1 3.6E-05 39.8 23.5 221 112-382 25-247 (282)
334 2g8s_A Glucose/sorbosone dehyd 95.5 1.5 5.1E-05 40.3 27.6 47 361-407 288-335 (353)
335 3kci_A Probable E3 ubiquitin-p 95.5 1.6 5.6E-05 40.6 31.2 253 150-433 54-345 (389)
336 2uvk_A YJHT; unknown function, 95.5 1.5 5.1E-05 40.2 22.5 69 357-435 248-344 (357)
337 3a9g_A Putative uncharacterize 95.5 1.5 5.3E-05 40.2 29.1 48 360-407 275-324 (354)
338 3das_A Putative oxidoreductase 95.4 0.59 2E-05 42.7 15.7 147 258-407 27-214 (347)
339 2woz_A Kelch repeat and BTB do 95.2 1.6 5.5E-05 39.2 21.0 150 231-387 109-293 (318)
340 1cru_A Protein (soluble quinop 95.1 2.2 7.6E-05 40.7 19.4 110 220-329 26-163 (454)
341 2be1_A Serine/threonine-protei 94.9 0.044 1.5E-06 50.0 6.6 145 232-378 10-181 (339)
342 2zwa_A Leucine carboxyl methyl 94.9 2.7 9.4E-05 42.6 20.6 150 231-385 451-639 (695)
343 1tl2_A L10, protein (tachylect 94.6 0.45 1.5E-05 40.1 11.3 106 223-334 90-204 (236)
344 2zwa_A Leucine carboxyl methyl 94.6 2.9 0.0001 42.4 19.8 192 230-434 396-636 (695)
345 1cru_A Protein (soluble quinop 94.5 3 0.0001 39.8 18.5 107 263-369 27-162 (454)
346 1xi4_A Clathrin heavy chain; a 93.7 4.3 0.00015 44.2 19.0 196 118-345 75-294 (1630)
347 1xi4_A Clathrin heavy chain; a 93.5 6.4 0.00022 42.9 19.8 217 166-434 84-332 (1630)
348 3sbq_A Nitrous-oxide reductase 93.1 4.2 0.00014 39.4 16.1 128 262-389 322-486 (638)
349 4d9s_A UVB-resistance protein 91.0 10 0.00035 35.4 35.1 288 111-433 16-357 (406)
350 3kci_A Probable E3 ubiquitin-p 90.9 9.9 0.00034 35.2 26.3 246 112-381 54-345 (389)
351 3s25_A Hypothetical 7-bladed b 90.4 9.2 0.00032 34.0 22.2 157 227-407 59-235 (302)
352 3mvd_K Regulator of chromosome 89.8 13 0.00045 34.8 29.9 243 112-381 76-374 (423)
353 4d9s_A UVB-resistance protein 88.2 17 0.00056 33.9 28.1 244 112-380 69-356 (406)
354 4gq2_M Nucleoporin NUP120; bet 87.7 15 0.00051 38.7 16.3 39 221-259 236-274 (950)
355 2wg3_C Hedgehog-interacting pr 86.3 23 0.00079 33.7 17.0 111 220-330 13-159 (463)
356 3sbq_A Nitrous-oxide reductase 84.2 3.5 0.00012 40.0 8.4 128 332-472 299-451 (638)
357 3b7f_A Glycosyl hydrolase, BNR 83.0 29 0.00098 32.0 24.4 62 221-283 177-254 (394)
358 3s25_A Hypothetical 7-bladed b 82.4 26 0.00089 31.0 25.0 138 227-383 110-257 (302)
359 1zi0_A DNA gyrase subunit A; b 81.9 28 0.00094 31.0 19.8 192 231-433 2-226 (307)
360 1suu_A DNA gyrase subunit A; t 81.4 29 0.00099 30.9 20.5 195 229-434 5-232 (312)
361 3mvd_K Regulator of chromosome 78.6 43 0.0015 31.2 33.7 251 149-433 75-374 (423)
362 2wg3_C Hedgehog-interacting pr 75.6 38 0.0013 32.2 12.7 108 263-370 14-158 (463)
363 4fhn_B Nucleoporin NUP120; pro 72.5 12 0.00041 40.4 9.4 38 222-259 239-276 (1139)
364 3of7_A Regulator of chromosome 70.5 74 0.0025 30.2 31.7 249 111-380 67-404 (473)
365 3no0_A DNA gyrase subunit A; D 70.0 55 0.0019 28.5 18.3 206 102-339 12-245 (276)
366 3no0_A DNA gyrase subunit A; D 65.8 67 0.0023 27.9 21.6 203 221-434 24-247 (276)
367 3b7f_A Glycosyl hydrolase, BNR 64.8 84 0.0029 28.7 25.0 111 222-336 116-258 (394)
368 3f7f_A Nucleoporin NUP120; nuc 64.2 29 0.00099 34.9 9.3 38 221-260 222-259 (729)
369 3f7f_A Nucleoporin NUP120; nuc 60.5 35 0.0012 34.3 9.0 38 353-390 222-259 (729)
370 3uc1_A DNA gyrase subunit A; D 57.0 1.1E+02 0.0037 27.4 26.5 207 219-434 40-280 (327)
371 1suu_A DNA gyrase subunit A; t 56.9 1.1E+02 0.0036 27.2 27.1 197 158-380 8-230 (312)
372 3uc1_A DNA gyrase subunit A; D 53.3 1.2E+02 0.0043 27.0 23.5 192 120-339 53-278 (327)
373 1zi0_A DNA gyrase subunit A; b 51.4 1.3E+02 0.0044 26.6 26.4 204 221-434 42-278 (307)
374 3l6v_A GYRA, DNA gyrase subuni 48.7 1.6E+02 0.0054 26.9 21.7 150 228-380 3-179 (370)
375 4gq2_M Nucleoporin NUP120; bet 44.1 3.1E+02 0.01 28.8 17.7 32 396-435 237-268 (950)
376 3al9_A Plexin-A2; beta-propell 43.7 68 0.0023 31.1 8.0 71 265-335 402-476 (539)
377 4fhn_B Nucleoporin NUP120; pro 42.6 1.2E+02 0.0039 32.8 10.4 34 311-344 239-272 (1139)
378 1wp5_A Topoisomerase IV; broke 40.3 2E+02 0.0068 25.6 24.8 239 158-433 5-277 (323)
379 3of7_A Regulator of chromosome 37.3 2.7E+02 0.0092 26.2 29.1 228 148-380 66-340 (473)
380 1a12_A RCC1, regulator of chro 36.8 2.5E+02 0.0086 25.7 31.1 244 111-380 59-364 (413)
381 4hvt_A Ritya.17583.B, post-pro 36.5 3.5E+02 0.012 27.3 19.5 197 224-434 132-382 (711)
382 3mez_B Mannose-specific lectin 36.4 1.2E+02 0.0041 21.9 10.5 24 267-291 60-83 (113)
383 3q6k_A 43.2 kDa salivary prote 36.3 2.5E+02 0.0087 25.6 17.9 119 221-340 152-306 (381)
384 3l6v_A GYRA, DNA gyrase subuni 32.6 2.9E+02 0.0098 25.1 28.6 120 219-339 44-179 (370)
385 3q6k_A 43.2 kDa salivary prote 32.1 3E+02 0.01 25.2 21.5 163 243-407 124-336 (381)
386 1q47_A Semaphorin 3A; beta pro 31.7 1.7E+02 0.0058 27.9 8.6 61 275-335 423-487 (495)
387 1a12_A RCC1, regulator of chro 31.3 3.1E+02 0.011 25.1 33.6 248 149-433 59-365 (413)
388 4hvt_A Ritya.17583.B, post-pro 29.1 4.6E+02 0.016 26.4 22.9 101 281-383 318-431 (711)
389 4gz8_A Semaphorin-3A; multi-do 24.8 4.1E+02 0.014 26.5 10.1 61 275-335 431-495 (667)
390 4a9v_A PHOX; hydrolase, beta-p 22.8 3.1E+02 0.01 26.8 8.5 20 309-328 530-549 (592)
391 3nvq_A Semaphorin-7A; beta-pro 21.8 2.8E+02 0.0097 27.1 8.1 58 363-428 381-444 (590)
392 3oky_A Plexin-A2; transmembran 21.7 1.8E+02 0.0061 29.2 6.8 61 275-335 414-475 (681)
393 1zvu_A Topoisomerase IV subuni 21.1 5.3E+02 0.018 25.8 9.9 148 229-381 469-633 (716)
394 4h3o_A Lectin; cadmium, plant 21.0 2.3E+02 0.0078 20.1 10.4 23 267-290 54-76 (105)
395 1q47_A Semaphorin 3A; beta pro 20.3 2.7E+02 0.0091 26.6 7.6 58 363-428 422-487 (495)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.3e-44 Score=368.25 Aligned_cols=385 Identities=16% Similarity=0.188 Sum_probs=277.2
Q ss_pred CCCCCCCCCCCcCccCCCCCCCCCCCCCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc----ccccc
Q 047728 71 SSSPFSKSPWSTHHVSVPTPSNNDDGFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR----EFSGF 144 (474)
Q Consensus 71 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~----~~~~~ 144 (474)
.+..++++|................+.........+.+|.+.|++++|+ |++||+|+.||+|+|||... ....+
T Consensus 20 ~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~ 99 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI 99 (611)
T ss_dssp CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE
T ss_pred ceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee
Confidence 3444566776654443221111122333345677889999999998876 88999999999999999642 23467
Q ss_pred ccCccCEEEEEec--CCEEEEEeCC----CeEEEEecCCCCcce------eeeecccCccce-eeeeecCCCCeEEEeee
Q 047728 145 KSNSGLVKAIVIS--NEKIFSGHQD----GKIRVWKVSSKDASI------HKRVGTLPTFKD-FIKCSMKPSNYIEVRRH 211 (474)
Q Consensus 145 ~~h~~~V~~i~~~--~~~l~s~~~d----g~i~vwd~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 211 (474)
.+|.+.|.+++|+ +++|++++.+ +.|++||........ ...+...+.... ++.+.. ...+.++..
T Consensus 100 ~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~--D~~v~lwd~ 177 (611)
T 1nr0_A 100 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD--DNTVAIFEG 177 (611)
T ss_dssp ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEET--TSCEEEEET
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeC--CCeEEEEEC
Confidence 7899999999998 6688888765 478888754321111 111111122111 222222 222333332
Q ss_pred c----cceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee-------ecCcceeEEEecCCC-eEEEe
Q 047728 212 R----NGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI-------AHDDAVNSIVAGFDG-LVFTG 279 (474)
Q Consensus 212 ~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~v~~~~~~-~l~~~ 279 (474)
. ...+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+. +|.+.|.+++|+|++ +|+++
T Consensus 178 ~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~ 257 (611)
T 1nr0_A 178 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257 (611)
T ss_dssp TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEE
Confidence 2 24567899999999999999999999999999999999999888874 799999999999999 89999
Q ss_pred eCCCcEEEEEcccCCCceee-------------------------------------eeeeeeecccccEEEEEEcCCCC
Q 047728 280 SADGTVKVWRRELQGKGTKH-------------------------------------FFSQTLLKQECAVTALAISPDAA 322 (474)
Q Consensus 280 ~~dg~i~iwd~~~~~~~~~~-------------------------------------~~~~~~~~~~~~v~~l~~~~~~~ 322 (474)
+.|++|++||++........ .....+.+|...|++++|+|+++
T Consensus 258 s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~ 337 (611)
T 1nr0_A 258 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK 337 (611)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC
Confidence 99999999998754321100 01234567899999999999999
Q ss_pred EEEEEcCCCcEEEeecCcccccceeee-----------------------------------------------------
Q 047728 323 IVYCGSSDGLVNFWERELNLSHGGVLR----------------------------------------------------- 349 (474)
Q Consensus 323 ~l~~~~~dg~i~v~d~~~~~~~~~~~~----------------------------------------------------- 349 (474)
+|++++.|+.|++||+.++........
T Consensus 338 ~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 417 (611)
T 1nr0_A 338 TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 417 (611)
T ss_dssp EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEE
T ss_pred EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEE
Confidence 999999999999999875432110000
Q ss_pred ------------------------------ecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEE
Q 047728 350 ------------------------------GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKC 399 (474)
Q Consensus 350 ------------------------------~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~ 399 (474)
......++++|++++|++|+.|++|++||+.++....... .+|...|++
T Consensus 418 ~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~ 496 (611)
T 1nr0_A 418 AVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITS 496 (611)
T ss_dssp EECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEE
T ss_pred EEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEE
Confidence 0112345677899999999999999999998775433444 679999999
Q ss_pred EEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 400 LAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 400 l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
++|+|+++ +|++++.|++|++|++.+..... ......+|...|.++ +|||||++|+++|
T Consensus 497 v~fspdg~--------~las~s~d~~v~~w~~~~~~~~~----~~~~~~~H~~~V~~v----~fspdg~~lasgs 555 (611)
T 1nr0_A 497 VAFSNNGA--------FLVATDQSRKVIPYSVANNFELA----HTNSWTFHTAKVACV----SWSPDNVRLATGS 555 (611)
T ss_dssp EEECTTSS--------EEEEEETTSCEEEEEGGGTTEES----CCCCCCCCSSCEEEE----EECTTSSEEEEEE
T ss_pred EEECCCCC--------EEEEEcCCCCEEEEEcCCCCcee----eeeeeeecccceeEE----EECCCCCEEEEEE
Confidence 99999999 99999999999999998732110 111234588999998 7888999998864
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4e-44 Score=346.88 Aligned_cols=281 Identities=22% Similarity=0.399 Sum_probs=248.5
Q ss_pred eeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecC
Q 047728 103 IGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVS 176 (474)
Q Consensus 103 ~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~ 176 (474)
...+.+|.+.|++++|+ +.+|++|+.||+|+|||.. +....+.+|.+.|.+++|+ +++|++|+.|++|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 45688999999999987 7899999999999999954 5677889999999999998 6799999999999999998
Q ss_pred CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee
Q 047728 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE 256 (474)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 256 (474)
+.+... .+.+|...|.+++|+|++++|++|+.|++|++||++++.++.
T Consensus 181 ~~~~~~--------------------------------~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~ 228 (410)
T 1vyh_C 181 GFECIR--------------------------------TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 228 (410)
T ss_dssp SSCEEE--------------------------------CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCceeE--------------------------------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 765431 234599999999999999999999999999999999999999
Q ss_pred eeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC---------------
Q 047728 257 SVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD--------------- 320 (474)
Q Consensus 257 ~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--------------- 320 (474)
.+.+|...|.++.+++++ .+++|+.|+.|++||++... ....+..|...|.+++|+|+
T Consensus 229 ~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 1vyh_C 229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE------CKAELREHRHVVECISWAPESSYSSISEATGSETK 302 (410)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred EEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc------eeeEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence 999999999999999999 89999999999999997654 34567789999999999996
Q ss_pred -----CCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC
Q 047728 321 -----AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH 393 (474)
Q Consensus 321 -----~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h 393 (474)
+.+|++|+.|+.|++||++++... ..+.+|...+.+ +++++++|++|+.|+.|++||+.+++ ++..+.+|
T Consensus 303 ~~~~~g~~l~sgs~D~~i~iwd~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~--~~~~~~~h 379 (410)
T 1vyh_C 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR--CMKTLNAH 379 (410)
T ss_dssp -----CCEEEEEETTSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC--CCEEEECC
T ss_pred ccCCCCCEEEEEeCCCeEEEEECCCCceE-EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eEEEEcCC
Confidence 678999999999999999987655 456678877754 55679999999999999999998877 46788899
Q ss_pred ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 394 SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 394 ~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
...|++++|+|++. +|++|+.||+|++|+++
T Consensus 380 ~~~v~~l~~~~~~~--------~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 380 EHFVTSLDFHKTAP--------YVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSCEEEEEECSSSS--------CEEEEETTSEEEEEC--
T ss_pred CCcEEEEEEcCCCC--------EEEEEeCCCcEEEEeCC
Confidence 99999999999998 89999999999999863
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6e-44 Score=333.86 Aligned_cols=285 Identities=19% Similarity=0.261 Sum_probs=249.3
Q ss_pred cceeeeeeeeecCcEEEEEEc------CCEEEEeeCCCcEEEEeCCc----cccccccCccCEEEEEec--CCEEEEEeC
Q 047728 99 PNVLIGSLVREEGHIYSLAAA------GDLLYTGSDSKNIRVWKNQR----EFSGFKSNSGLVKAIVIS--NEKIFSGHQ 166 (474)
Q Consensus 99 ~~~~~~~l~~h~~~i~~~~~~------~~~l~tgs~dg~v~vwd~~~----~~~~~~~h~~~V~~i~~~--~~~l~s~~~ 166 (474)
...+++.+.+|++.|++++++ +++|+||+.|++|+||+... ....+.+|...|.+++++ +..+++++.
T Consensus 21 ~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~ 100 (321)
T 3ow8_A 21 YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL 100 (321)
T ss_dssp CEEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred hhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC
Confidence 356667888999999999985 56999999999999999542 234578999999999998 568999999
Q ss_pred CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEE
Q 047728 167 DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKV 246 (474)
Q Consensus 167 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i 246 (474)
|++|++||+.+++... .+..|...+.+++|+|++++|++++.|+.|++
T Consensus 101 D~~i~lWd~~~~~~~~--------------------------------~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i 148 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIK--------------------------------SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNI 148 (321)
T ss_dssp TSEEEEEETTTTEEEE--------------------------------EEECCTTCCCCEEECTTSSEEEEECTTSEEEE
T ss_pred CCcEEEEECCCCCEEE--------------------------------EEeCCCccEEEEEECCCCCEEEEEcCCCcEEE
Confidence 9999999998875432 22337778999999999999999999999999
Q ss_pred EEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728 247 WRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY 325 (474)
Q Consensus 247 wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 325 (474)
||+++++....+..|...|.+++|+|++ +|++|+.||.|++||++... ....+..|...|.+++|+|++++|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~spd~~~l~ 222 (321)
T 3ow8_A 149 FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK------LLHTLEGHAMPIRSLTFSPDSQLLV 222 (321)
T ss_dssp EETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------EEEEECCCSSCCCEEEECTTSCEEE
T ss_pred EEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc------EEEEEcccCCceeEEEEcCCCCEEE
Confidence 9999999999999999999999999999 99999999999999997543 3556778999999999999999999
Q ss_pred EEcCCCcEEEeecCcccccceeeeecceeeEE--EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEe
Q 047728 326 CGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE 403 (474)
Q Consensus 326 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~ 403 (474)
+++.|+.|++||++..... ..+.+|...+.+ +++++.+|++|+.|+.|++||+.+++ ++..+.+|...|.+++|+
T Consensus 223 s~s~dg~i~iwd~~~~~~~-~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~h~~~v~~v~~s 299 (321)
T 3ow8_A 223 TASDDGYIKIYDVQHANLA-GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT--CVHTFFDHQDQVWGVKYN 299 (321)
T ss_dssp EECTTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEC
T ss_pred EEcCCCeEEEEECCCccee-EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE--EEEEEcCCCCcEEEEEEC
Confidence 9999999999999877554 566778877755 55689999999999999999999887 577889999999999999
Q ss_pred eCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 404 KDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 404 ~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
|++. +|++++.||.|+|||+.
T Consensus 300 ~~g~--------~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 300 GNGS--------KIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTSS--------EEEEEETTCCEEEEECC
T ss_pred CCCC--------EEEEEeCCCeEEEEeCC
Confidence 9998 89999999999999963
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.5e-43 Score=330.39 Aligned_cols=286 Identities=19% Similarity=0.330 Sum_probs=245.7
Q ss_pred ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEE
Q 047728 100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVW 173 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vw 173 (474)
.....+|.+|.+.|++++++ +++|++|+.||+|+|||.. +.+..+..|...|.+++|+ +++|++|+.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34567899999999999986 7899999999999999954 5667788899999999998 6799999999999999
Q ss_pred ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc
Q 047728 174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK 253 (474)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 253 (474)
++.+.+...... ..+.+|...|.++.|++++ .+++++.|++|++||+++++
T Consensus 125 ~~~~~~~~~~~~----------------------------~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~ 175 (340)
T 1got_B 125 NLKTREGNVRVS----------------------------RELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQ 175 (340)
T ss_dssp ETTTCSBSCEEE----------------------------EEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTE
T ss_pred ECccCCCcceeE----------------------------EEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCc
Confidence 998764321110 1345699999999999876 58999999999999999999
Q ss_pred eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728 254 CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL 332 (474)
Q Consensus 254 ~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 332 (474)
++..+.+|...|.+++|+|++ .+++|+.|+.|++||++... ....+..|...|.+++|+|++++|++++.|+.
T Consensus 176 ~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~ 249 (340)
T 1got_B 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM------CRQTFTGHESDINAICFFPNGNAFATGSDDAT 249 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS------EEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe------eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc
Confidence 999999999999999999999 89999999999999998654 35567789999999999999999999999999
Q ss_pred EEEeecCcccccceeee-ec--ceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccc
Q 047728 333 VNFWERELNLSHGGVLR-GH--KLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESL 409 (474)
Q Consensus 333 i~v~d~~~~~~~~~~~~-~~--~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 409 (474)
|++||++.......... .+ ....+++++++++|++|+.|+.|++||+.+.+ .+..+.+|.++|.+++|+|++.
T Consensus 250 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~s~dg~-- 325 (340)
T 1got_B 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD--RAGVLAGHDNRVSCLGVTDDGM-- 325 (340)
T ss_dssp EEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSS--
T ss_pred EEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc--EeeEeecCCCcEEEEEEcCCCC--
Confidence 99999987655432221 11 23346677889999999999999999998877 4678899999999999999998
Q ss_pred cccceEEEEEecCCCcEEEEE
Q 047728 410 SREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 410 ~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
+|++|+.|+.|+|||
T Consensus 326 ------~l~s~s~D~~i~iWd 340 (340)
T 1got_B 326 ------AVATGSWDSFLKIWN 340 (340)
T ss_dssp ------CEEEEETTSCEEEEC
T ss_pred ------EEEEEcCCccEEecC
Confidence 899999999999996
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.7e-43 Score=333.37 Aligned_cols=284 Identities=20% Similarity=0.217 Sum_probs=229.3
Q ss_pred eecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC-----c--------cccccccCccCEEEEEec-CCEEEEEeCCCeEE
Q 047728 108 REEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ-----R--------EFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIR 171 (474)
Q Consensus 108 ~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~-----~--------~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~ 171 (474)
.|+..|.+++|+ |++|++++ |+++++||.. . .......|...|.+++|+ ++.|++|+.||+|+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~ 106 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVE 106 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEE
Confidence 467779988876 88998887 7788888621 0 111223456789999998 67899999999999
Q ss_pred EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC
Q 047728 172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD 251 (474)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 251 (474)
|||+++++....... .+.+|.+.|++++|+|++++|++|+.|++|++||+++
T Consensus 107 lWd~~~~~~~~~~~~----------------------------~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 107 LWELDENETLIVSKF----------------------------CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EEEECTTSSCEEEEE----------------------------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EEeccCCCceeEeec----------------------------cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 999998876533221 2346999999999999999999999999999999999
Q ss_pred cceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEc
Q 047728 252 YKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGS 328 (474)
Q Consensus 252 ~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~ 328 (474)
++++..+.+|...|.+++|++++ +|++++.|+.|++||++...... ......+...+.+++|+| ++++|++|+
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~l~sg~ 234 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS----QIGCSAPGYLPTSLAWHPQQSEVFVFGD 234 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE----ECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceee----eeecceeeccceeeeecCCCCcceEEec
Confidence 99999999999999999999987 78999999999999998665311 112234566799999999 567889999
Q ss_pred CCCcEEEeecCcccccceeeeecceeeEEEE--ecC-CEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728 329 SDGLVNFWERELNLSHGGVLRGHKLAILCLV--TAG-NLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405 (474)
Q Consensus 329 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~ 405 (474)
.|+.|++||++++..+ ..+.+|...|.++. +++ ++|++|+.|++|+|||+.+++ +..+.+|.+.|++++|+|+
T Consensus 235 ~dg~v~~wd~~~~~~~-~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---~~~~~~H~~~V~~v~~sp~ 310 (344)
T 4gqb_B 235 ENGTVSLVDTKSTSCV-LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---LFRSQAHRDFVRDATWSPL 310 (344)
T ss_dssp TTSEEEEEESCC--CC-EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---EEEECCCSSCEEEEEECSS
T ss_pred cCCcEEEEECCCCcEE-EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---EEEEcCCCCCEEEEEEeCC
Confidence 9999999999987655 56678888776554 566 689999999999999999886 3467899999999999999
Q ss_pred CccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 406 DESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 406 ~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
+.. +|++++.|++|++|++.+..
T Consensus 311 ~~~-------llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 311 NHS-------LLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp STT-------EEEEEETTSCEEEEECCC--
T ss_pred CCe-------EEEEEcCCCeEEEEECCCCC
Confidence 864 78899999999999998753
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.1e-42 Score=325.40 Aligned_cols=287 Identities=19% Similarity=0.288 Sum_probs=245.5
Q ss_pred eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728 101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWK 174 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd 174 (474)
...+.|.+|.+.|++++++ +++|++|+.||+|+|||.. +....+..|...|.+++|+ +..|++|+.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 5677899999999999987 7899999999999999943 4566677888999999998 77999999999999999
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC 254 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 254 (474)
+......... .....+.+|...|.+++|+|++..|++++.|++|++||++++++
T Consensus 135 ~~~~~~~~~~--------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~ 188 (354)
T 2pbi_B 135 LTFDKNENMA--------------------------AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL 188 (354)
T ss_dssp CCCCTTCCSG--------------------------GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred Eecccccccc--------------------------ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE
Confidence 8764321100 01123456999999999999999999999999999999999999
Q ss_pred eeeeeecCcceeEEEecCC--C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC
Q 047728 255 LESVIAHDDAVNSIVAGFD--G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG 331 (474)
Q Consensus 255 ~~~~~~~~~~v~~v~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 331 (474)
+..+.+|...|.++.++|+ + .|++|+.||.|++||++... ....+..|...|.+++|+|++.+|++++.|+
T Consensus 189 ~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~ 262 (354)
T 2pbi_B 189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ------CVQAFETHESDVNSVRYYPSGDAFASGSDDA 262 (354)
T ss_dssp EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc------EEEEecCCCCCeEEEEEeCCCCEEEEEeCCC
Confidence 9999999999999999874 4 89999999999999998654 3556778999999999999999999999999
Q ss_pred cEEEeecCcccccceeeeec----ceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728 332 LVNFWERELNLSHGGVLRGH----KLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 332 ~i~v~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
.|++||++...... .+..+ ....+++++++.+|++|+.|+.|++||+.+++ .+..+.+|.+.|++++|+|++.
T Consensus 263 ~v~lwd~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~--~~~~l~~h~~~v~~l~~spdg~ 339 (354)
T 2pbi_B 263 TCRLYDLRADREVA-IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS--RVSILFGHENRVSTLRVSPDGT 339 (354)
T ss_dssp CEEEEETTTTEEEE-EECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS--EEEEECCCSSCEEEEEECTTSS
T ss_pred eEEEEECCCCcEEE-EEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc--eEEEEECCCCcEEEEEECCCCC
Confidence 99999998765432 22222 23456777899999999999999999998887 4677889999999999999999
Q ss_pred cccccceEEEEEecCCCcEEEEE
Q 047728 408 SLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 408 ~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
+|++|+.|++|+||+
T Consensus 340 --------~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 340 --------AFCSGSWDHTLRVWA 354 (354)
T ss_dssp --------CEEEEETTSEEEEEC
T ss_pred --------EEEEEcCCCCEEecC
Confidence 899999999999995
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.7e-42 Score=319.48 Aligned_cols=268 Identities=21% Similarity=0.287 Sum_probs=229.5
Q ss_pred cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 140 EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 140 ~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
....+.+|.+.|.+++|+ +.+|++++.||+|++||+.++.... .+.
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~--------------------------------~~~ 52 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR--------------------------------SIQ 52 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--------------------------------EEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE--------------------------------Eee
Confidence 345678899999999998 6689999999999999998765432 234
Q ss_pred eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
.|..+|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ +|++|+.|++|++||++....
T Consensus 53 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~- 131 (304)
T 2ynn_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA- 131 (304)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE-
T ss_pred ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc-
Confidence 488999999999999999999999999999999999999999999999999999999 999999999999999986532
Q ss_pred eeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEe--cCCEEEEEeCC
Q 047728 297 TKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVT--AGNLVFSGSAD 371 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~--~~~~l~sgs~d 371 (474)
....+.+|...|.+++|+| ++.+|++|+.|+.|++||++..........+|...+ +++.+ ++.+|++|+.|
T Consensus 132 ----~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D 207 (304)
T 2ynn_A 132 ----LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207 (304)
T ss_dssp ----EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT
T ss_pred ----hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC
Confidence 3456778999999999999 678999999999999999987766555555555545 44444 67899999999
Q ss_pred CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCC
Q 047728 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHG 451 (474)
Q Consensus 372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 451 (474)
++|++||+++++ ++..+.+|...|.+++|+|++. +|++|+.||+|++||+.+. .....+..|.
T Consensus 208 ~~i~iWd~~~~~--~~~~~~~h~~~v~~~~~~p~~~--------~l~s~s~Dg~i~iWd~~~~-------~~~~~~~~~~ 270 (304)
T 2ynn_A 208 LTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLP--------IIISGSEDGTLKIWNSSTY-------KVEKTLNVGL 270 (304)
T ss_dssp SEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSS--------EEEEEETTSCEEEEETTTC-------CEEEEECCSS
T ss_pred CeEEEEeCCCCc--cceeeCCCCCCEEEEEECCCCC--------EEEEEcCCCeEEEEECCCC-------ceeeeccCCC
Confidence 999999999887 6788999999999999999998 9999999999999999887 4566777788
Q ss_pred CCCCccccCC
Q 047728 452 VAPNSLPYAP 461 (474)
Q Consensus 452 ~~v~~l~~~p 461 (474)
..+.+++|+|
T Consensus 271 ~~~~~~~~~~ 280 (304)
T 2ynn_A 271 ERSWCIATHP 280 (304)
T ss_dssp SSEEEEEECT
T ss_pred ccEEEEEECC
Confidence 8888884443
No 8
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-41 Score=319.90 Aligned_cols=298 Identities=19% Similarity=0.286 Sum_probs=230.8
Q ss_pred cceeeeeeeeecCcEEEEEEcCCEEEEeeCCCcEEEEeCCc----ccccc-cc-CccCEEEEEec--CCEEEEEeCCCeE
Q 047728 99 PNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQR----EFSGF-KS-NSGLVKAIVIS--NEKIFSGHQDGKI 170 (474)
Q Consensus 99 ~~~~~~~l~~h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~~----~~~~~-~~-h~~~V~~i~~~--~~~l~s~~~dg~i 170 (474)
...++..|.+|++.|+++++++++|++|+.|++|++||... ....+ .. |...|.+++|+ +++|++|+.|++|
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 82 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence 34678899999999999999988999999999999999653 23333 34 99999999998 6799999999999
Q ss_pred EEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC
Q 047728 171 RVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS 250 (474)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 250 (474)
++|++......... ......+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus 83 ~iw~~~~~~~~~~~-------------------------~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 83 SIWAKEESADRTFE-------------------------MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137 (330)
T ss_dssp EEEEC-------CC-------------------------CEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred EEEEcccCcCcccc-------------------------ceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence 99998643210000 00012356799999999999999999999999999999994
Q ss_pred C----cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC--CCE
Q 047728 251 D----YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD--AAI 323 (474)
Q Consensus 251 ~----~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~ 323 (474)
. .+++..+.+|...|.+++|+|++ +|++++.|++|++||.+... ......+.+|...|.+++|+|+ +.+
T Consensus 138 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 138 ESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD----WECVAVLNGHEGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred CCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC----eeEEEEccCCCCcEEEEEecCCCCeeE
Confidence 3 25677888999999999999999 99999999999999986431 1245667789999999999998 779
Q ss_pred EEEEcCCCcEEEeecCcccc-------cceeee-ecceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEE-EeecCC
Q 047728 324 VYCGSSDGLVNFWERELNLS-------HGGVLR-GHKLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICL-SMLTGH 393 (474)
Q Consensus 324 l~~~~~dg~i~v~d~~~~~~-------~~~~~~-~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~-~~~~~h 393 (474)
|++++.|++|++||++.... ....+. .|...+.++.+. +.+|++++.||.|+|||..+++.... ....+|
T Consensus 214 l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h 293 (330)
T 2hes_X 214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCH 293 (330)
T ss_dssp EEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred EEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecccccc
Confidence 99999999999999875421 112222 377778777663 56899999999999999987753223 334678
Q ss_pred cc-ceEEEEEee--CCccccccceEEEEEecCCCcEEEEEccC
Q 047728 394 SG-PVKCLAVEK--DDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 394 ~~-~v~~l~~~~--~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
.. .|.+++|+| ++. +|++|+.||+|+||++..
T Consensus 294 ~~~~v~~v~~~~~~~~~--------~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 294 GVYEINVVKWLELNGKT--------ILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEEEEEEC-----C--------CEEEEETTSEEEEEEC--
T ss_pred ccceEEEEEEecCCCce--------EEEEecCCCcEEEEEecc
Confidence 87 899999999 566 899999999999999865
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-41 Score=321.43 Aligned_cols=297 Identities=23% Similarity=0.326 Sum_probs=237.6
Q ss_pred ceeeeeeeeecC-cEEEEEEc--CCEEEEeeCCCcEEEEeCCcc-----ccccccCccCEEEEEec--CCEEEEEeCCCe
Q 047728 100 NVLIGSLVREEG-HIYSLAAA--GDLLYTGSDSKNIRVWKNQRE-----FSGFKSNSGLVKAIVIS--NEKIFSGHQDGK 169 (474)
Q Consensus 100 ~~~~~~l~~h~~-~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~-----~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~ 169 (474)
..++.++.+|.+ .|++++|+ |++||+|+.|++|+|||.... .....+|...|.+++|+ +++|++|+.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 467889999988 89998876 889999999999999985432 12336899999999998 679999999999
Q ss_pred EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728 170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT 249 (474)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~ 249 (474)
|++|++..+..... ..+.+|...|.+++|+|++++|++|+.|++|++||+
T Consensus 85 v~iw~~~~~~~~~~------------------------------~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~ 134 (345)
T 3fm0_A 85 TCIWKKNQDDFECV------------------------------TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134 (345)
T ss_dssp EEEEEECCC-EEEE------------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEEEEccCCCeEEE------------------------------EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEEC
Confidence 99999876643211 134569999999999999999999999999999999
Q ss_pred CCcc---eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728 250 SDYK---CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY 325 (474)
Q Consensus 250 ~~~~---~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 325 (474)
.++. ++..+..|...|.+++|+|++ +|++++.|+.|++||.+... ......+.+|...|.+++|+|++++|+
T Consensus 135 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~----~~~~~~~~~h~~~v~~l~~sp~g~~l~ 210 (345)
T 3fm0_A 135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD----WVCCATLEGHESTVWSLAFDPSGQRLA 210 (345)
T ss_dssp CTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC----EEEEEEecCCCCceEEEEECCCCCEEE
Confidence 8763 456778899999999999999 99999999999999987432 223456778999999999999999999
Q ss_pred EEcCCCcEEEeecCcccccc--------------eeee-ecceeeEE--EEecCCEEEEEeCCCcEEEEECCCCce----
Q 047728 326 CGSSDGLVNFWERELNLSHG--------------GVLR-GHKLAILC--LVTAGNLVFSGSADMSICIWRRKENEH---- 384 (474)
Q Consensus 326 ~~~~dg~i~v~d~~~~~~~~--------------~~~~-~~~~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~---- 384 (474)
+++.|+.|++||........ ..+. .|...+.+ +++++..|++++.|+.|++|+......
T Consensus 211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~ 290 (345)
T 3fm0_A 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP 290 (345)
T ss_dssp EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC
T ss_pred EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee
Confidence 99999999999964321110 1111 25555644 456789999999999999999865421
Q ss_pred ---EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728 385 ---ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP 437 (474)
Q Consensus 385 ---~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~ 437 (474)
.......+|...|++++|+|++.. +|++|+.||+|++|++.+++.+
T Consensus 291 ~~~~~~~~~~~h~~~V~~v~~~p~~~~-------~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 291 TFSLTAHLHQAHSQDVNCVAWNPKEPG-------LLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp CEEEEEEETTSSSSCEEEEEECSSSTT-------EEEEEETTSCEEEEEECC----
T ss_pred eEEEEeeecccccCcEeEeEEeCCCce-------EEEEcCCCCcEEEEEecCCCCc
Confidence 112334689999999999998743 8999999999999999887543
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-41 Score=318.16 Aligned_cols=286 Identities=21% Similarity=0.387 Sum_probs=241.4
Q ss_pred cceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCC-------ccccccccCccCEEEEEec--CCEEEEEeC
Q 047728 99 PNVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQ-------REFSGFKSNSGLVKAIVIS--NEKIFSGHQ 166 (474)
Q Consensus 99 ~~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~-------~~~~~~~~h~~~V~~i~~~--~~~l~s~~~ 166 (474)
...+..+|.+|++.|++++++ +++|++|+.|++|++|+.. ..+..+.+|...|.+++|+ +.+|++|+.
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 356778999999999999986 4799999999999999853 2356788999999999998 679999999
Q ss_pred CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEE
Q 047728 167 DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKV 246 (474)
Q Consensus 167 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i 246 (474)
|++|++||+.+++... .+.+|...|.+++|+|++.+|++|+.|++|++
T Consensus 86 D~~v~~wd~~~~~~~~--------------------------------~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~v 133 (319)
T 3frx_A 86 DKTLRLWDVATGETYQ--------------------------------RFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133 (319)
T ss_dssp TSEEEEEETTTTEEEE--------------------------------EEECCSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCEEEEEECCCCCeeE--------------------------------EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 9999999998875432 34569999999999999999999999999999
Q ss_pred EEcCCcceeeeeeecCcceeEEEecCC------C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC
Q 047728 247 WRTSDYKCLESVIAHDDAVNSIVAGFD------G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP 319 (474)
Q Consensus 247 wd~~~~~~~~~~~~~~~~v~~v~~~~~------~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 319 (474)
||++ ++++..+.+|...|.++.+.|. + .+++++.|+.|++||++... ....+.+|...|.+++|+|
T Consensus 134 wd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~------~~~~~~~h~~~v~~~~~sp 206 (319)
T 3frx_A 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ------IEADFIGHNSNINTLTASP 206 (319)
T ss_dssp EETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE------EEEEECCCCSCEEEEEECT
T ss_pred EECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch------hheeecCCCCcEEEEEEcC
Confidence 9986 5677888899999999999984 3 79999999999999997543 3456678999999999999
Q ss_pred CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee--------c
Q 047728 320 DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML--------T 391 (474)
Q Consensus 320 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--------~ 391 (474)
++++|++++.|+.|++||+.+...............++++|++.+|++++.+ .+++|++..... +..+ .
T Consensus 207 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~--~~~~~~~~~~~~~ 283 (319)
T 3frx_A 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYL--VDDLRPEFAGYSK 283 (319)
T ss_dssp TSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEE--EEEECCCCTTCCG
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCee--eeccCcccccccc
Confidence 9999999999999999999987665444333344557778899999988755 599999987652 2333 2
Q ss_pred CCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 392 GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 392 ~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
.|...+.+++|+|+++ +|++|+.||.|+||++.+.
T Consensus 284 ~~~~~v~~~~~spdg~--------~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 284 AAEPHAVSLAWSADGQ--------TLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp GGCCCEEEEEECTTSS--------EEEEEETTSCEEEEEEEEC
T ss_pred CcCcceeEEEECCCCC--------EEEEeecCceEEEEEEeec
Confidence 3567899999999999 9999999999999999764
No 11
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-42 Score=332.26 Aligned_cols=296 Identities=21% Similarity=0.347 Sum_probs=246.9
Q ss_pred cceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEE
Q 047728 99 PNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRV 172 (474)
Q Consensus 99 ~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~v 172 (474)
...+.++|.+|.+.|++++|+ +++|++|+.||+|+|||.. +....+..|...|.+++|+ +++|++|+.|+.|++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 346778899999999999986 7899999999999999954 5667788999999999998 779999999999999
Q ss_pred EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCCcEEEEEcCC
Q 047728 173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDKTFKVWRTSD 251 (474)
Q Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~ 251 (474)
|++......... . .....+.+|...|.++.|.|+ +..|++|+.|++|++||+.+
T Consensus 135 w~~~~~~~~~~~----~---------------------~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~ 189 (380)
T 3iz6_a 135 FNLSSQADRDGN----M---------------------PVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT 189 (380)
T ss_dssp EECCCCSSCCCS----S---------------------TTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT
T ss_pred EECCCCccccCC----c---------------------cceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC
Confidence 999764321000 0 011245679999999999996 56799999999999999999
Q ss_pred cceeeee-----eecCcceeEEEecC-CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEE
Q 047728 252 YKCLESV-----IAHDDAVNSIVAGF-DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIV 324 (474)
Q Consensus 252 ~~~~~~~-----~~~~~~v~~v~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 324 (474)
++.+..+ .+|...|.++.+++ ++ .+++|+.|+.|++||++.... ....+.+|...|.+++|+|++++|
T Consensus 190 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l 264 (380)
T 3iz6_a 190 GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-----AVRTYHGHEGDINSVKFFPDGQRF 264 (380)
T ss_dssp CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-----CCEEECCCSSCCCEEEECTTSSEE
T ss_pred CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-----ceEEECCcCCCeEEEEEecCCCeE
Confidence 9988777 57889999999987 44 999999999999999975433 345677899999999999999999
Q ss_pred EEEcCCCcEEEeecCcccccceeeee------c--ceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee----cC
Q 047728 325 YCGSSDGLVNFWERELNLSHGGVLRG------H--KLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML----TG 392 (474)
Q Consensus 325 ~~~~~dg~i~v~d~~~~~~~~~~~~~------~--~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~----~~ 392 (474)
++++.|++|++||++++......... + ....+++++++++|++|+.||.|++||+..++. +..+ .+
T Consensus 265 ~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~ 342 (380)
T 3iz6_a 265 GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM--VLNLGTLQNS 342 (380)
T ss_dssp EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE--EEEECCSCSS
T ss_pred EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce--EEEEecccCC
Confidence 99999999999999987654322211 1 134578888999999999999999999988773 3344 68
Q ss_pred CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 393 h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
|.+.|++++|+|++. +|++|+.|++|+||++...
T Consensus 343 h~~~v~~l~~s~dg~--------~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 343 HEGRISCLGLSSDGS--------ALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CCCCCCEEEECSSSS--------EEEEECTTSCEEEEECCSS
T ss_pred CCCceEEEEECCCCC--------EEEEeeCCCCEEEEecCCC
Confidence 999999999999999 9999999999999999765
No 12
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.5e-41 Score=313.88 Aligned_cols=286 Identities=19% Similarity=0.239 Sum_probs=241.6
Q ss_pred eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728 101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWK 174 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd 174 (474)
.+.+++.+|.+.|++++|+ +++|++|+.||+|++||.. ..+..+..|...|.++.|. +++|++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 4567899999999999987 8899999999999999965 4567788999999999997 77999999999999999
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc-c
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY-K 253 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~ 253 (474)
+.+++... .+.+|...|.+++|+|++++|++|+.|++|++||++++ .
T Consensus 84 ~~~~~~~~--------------------------------~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~ 131 (304)
T 2ynn_A 84 YNTGEKVV--------------------------------DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131 (304)
T ss_dssp TTTCCEEE--------------------------------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE
T ss_pred CCCCcEEE--------------------------------EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc
Confidence 99876532 34559999999999999999999999999999999877 4
Q ss_pred eeeeeeecCcceeEEEecCC-C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC--CCCEEEEEcC
Q 047728 254 CLESVIAHDDAVNSIVAGFD-G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP--DAAIVYCGSS 329 (474)
Q Consensus 254 ~~~~~~~~~~~v~~v~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~ 329 (474)
....+.+|...|.+++|+|+ + .|++|+.|+.|++||++.... .......+...+..++|.| ++.+|++++.
T Consensus 132 ~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~ 206 (304)
T 2ynn_A 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (304)
T ss_dssp EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC-----SEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc-----cceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence 55678899999999999994 4 899999999999999975543 1223345667899999987 7789999999
Q ss_pred CCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728 330 DGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 330 dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
|+.|++||++++... ..+.+|...+. +++|++.+|++|+.||+|++||+.+.+ ++..+..|...+.+++|+|++.
T Consensus 207 D~~i~iWd~~~~~~~-~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 283 (304)
T 2ynn_A 207 DLTIKIWDYQTKSCV-ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK--VEKTLNVGLERSWCIATHPTGR 283 (304)
T ss_dssp TSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC--EEEEECCSSSSEEEEEECTTCG
T ss_pred CCeEEEEeCCCCccc-eeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--eeeeccCCCccEEEEEECCCCC
Confidence 999999999987654 56677877774 556789999999999999999999887 5678889999999999999875
Q ss_pred cccccceEEEEEecCCCcEEEEEccC
Q 047728 408 SLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 408 ~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
.. ++++|+.|| +.+|++..
T Consensus 284 ~~------~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 284 KN------YIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp GG------CEEEEETTE-EEEEECC-
T ss_pred ce------EEEEecCCc-eEEEEecc
Confidence 32 577777665 77888765
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-41 Score=346.47 Aligned_cols=356 Identities=20% Similarity=0.233 Sum_probs=266.7
Q ss_pred CcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccc-------cCccCEEEEEec--CCEEEEE
Q 047728 98 SPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFK-------SNSGLVKAIVIS--NEKIFSG 164 (474)
Q Consensus 98 ~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~-------~h~~~V~~i~~~--~~~l~s~ 164 (474)
.+..++..+.+|++.|++++|+ |++|++|+.|++|++||.. +....+. +|.+.|.+++|+ +++|+++
T Consensus 178 ~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~ 257 (611)
T 1nr0_A 178 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 257 (611)
T ss_dssp TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEE
Confidence 4556778899999999999986 8899999999999999954 3444442 799999999998 6799999
Q ss_pred eCCCeEEEEecCCCCcceeeeecccCc---------cceeeeeecCCCCeEEEeeec----cceeeeccCCeeEEEecCC
Q 047728 165 HQDGKIRVWKVSSKDASIHKRVGTLPT---------FKDFIKCSMKPSNYIEVRRHR----NGLWIKHFDAISSLSMSED 231 (474)
Q Consensus 165 ~~dg~i~vwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~V~~l~~~~~ 231 (474)
+.|++|++||+.+++............ ...++.... ...+.++... ...+.+|...|++++|+|+
T Consensus 258 s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~--d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spd 335 (611)
T 1nr0_A 258 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA--NGFINFVNPELGSIDQVRYGHNKAITALSSSAD 335 (611)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET--TCCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred eCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC--CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCC
Confidence 999999999999876654333211000 011111111 1122222221 2345689999999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCcceeeee-eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCcee-----------e
Q 047728 232 QNLLYSASWDKTFKVWRTSDYKCLESV-IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTK-----------H 299 (474)
Q Consensus 232 ~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------~ 299 (474)
+++|++++.|++|++||+.++++...+ ..|...|.++++++++.+++++.|+.+++|++........ .
T Consensus 336 g~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~ 415 (611)
T 1nr0_A 336 GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL 415 (611)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE
T ss_pred CCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCc
Confidence 999999999999999999998887665 5789999999999888999999999999999764321100 0
Q ss_pred ee-----------------------eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee-
Q 047728 300 FF-----------------------SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI- 355 (474)
Q Consensus 300 ~~-----------------------~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v- 355 (474)
.. ......+...+.+++|+|++++|++|+.|+.|++||+...........+|...+
T Consensus 416 ~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~ 495 (611)
T 1nr0_A 416 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 495 (611)
T ss_dssp EEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEE
T ss_pred EEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceE
Confidence 00 000112456789999999999999999999999999976532211225676666
Q ss_pred -EEEEecCCEEEEEeCCCcEEEEECCC-CceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 356 -LCLVTAGNLVFSGSADMSICIWRRKE-NEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 356 -~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
++|+|++++|++++.|++|++||+.+ ++......+.+|...|++++|+|+++ +|++|+.|++|+||++..
T Consensus 496 ~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~--------~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 496 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV--------RLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTC
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCC--------EEEEEECCCcEEEEECCC
Confidence 55667899999999999999999987 44211112345999999999999999 999999999999999987
Q ss_pred CCCCCCCCcccccccCC-CCCCCccccCCCCCcCCceeecc
Q 047728 434 QAPPLVSTTQQHPLEGH-GVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 434 ~~~~~~~~~~~~~~~~~-~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
+... ....+.+| ...|.++ +|+|||+ |+++
T Consensus 568 ~~~~-----~~~~~~~h~~~~v~~v----~fs~d~~-l~s~ 598 (611)
T 1nr0_A 568 PSDH-----PIIIKGAHAMSSVNSV----IWLNETT-IVSA 598 (611)
T ss_dssp TTSC-----CEEETTSSTTSCEEEE----EEEETTE-EEEE
T ss_pred cccc-----cchhhccCcccCeeEE----EEcCCCE-EEEe
Confidence 6321 11346688 7888888 6678898 5554
No 14
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-41 Score=323.35 Aligned_cols=284 Identities=20% Similarity=0.237 Sum_probs=228.7
Q ss_pred eeecCcEEEEEEc--CCEEEEeeC------CCcEEEEeCCc------cccccccCccCEEEEEec-CCEEEEEeCCCeEE
Q 047728 107 VREEGHIYSLAAA--GDLLYTGSD------SKNIRVWKNQR------EFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIR 171 (474)
Q Consensus 107 ~~h~~~i~~~~~~--~~~l~tgs~------dg~v~vwd~~~------~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~ 171 (474)
..|++.|++++|+ |++||+|+. |+.|++|+... .......|...|.+++|+ ++.+++++.||+|+
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~ 118 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVE 118 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEE
Confidence 4699999998876 899999997 77899997442 223345788999999998 56888999999999
Q ss_pred EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC
Q 047728 172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD 251 (474)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 251 (474)
|||+.+++....... ...+|...|++++|+|++++|++|+.|++|++||+++
T Consensus 119 lWd~~~~~~~~~~~~----------------------------~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~ 170 (357)
T 4g56_B 119 LWEILEKESLLVNKF----------------------------AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ 170 (357)
T ss_dssp EC--------CCCCE----------------------------EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EeeccccceeEEEee----------------------------ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 999988764322111 1235999999999999999999999999999999999
Q ss_pred cceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC-CCEEEEEc
Q 047728 252 YKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD-AAIVYCGS 328 (474)
Q Consensus 252 ~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~ 328 (474)
++++..+.+|...|++++|++++ .+++++.|+.|++||++...... ......+...+.+++|+|+ +.+|++|+
T Consensus 171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~----~~~~~~~~~~v~~v~~sp~~~~~la~g~ 246 (357)
T 4g56_B 171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT----RIDFCASDTIPTSVTWHPEKDDTFACGD 246 (357)
T ss_dssp TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC----BCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee----eeeeccccccccchhhhhcccceEEEee
Confidence 99999999999999999999987 78999999999999998654311 2233456778999999996 57899999
Q ss_pred CCCcEEEeecCcccccceeeeecceeeEEEE--ecC-CEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEee-
Q 047728 329 SDGLVNFWERELNLSHGGVLRGHKLAILCLV--TAG-NLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK- 404 (474)
Q Consensus 329 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~- 404 (474)
.|+.|++||++++... ..+.+|...+.++. +++ ++|++|+.|++|+|||+++++. + ...+|.+.|++|+|+|
T Consensus 247 ~d~~i~~wd~~~~~~~-~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~--~-~~~~H~~~V~~vafsP~ 322 (357)
T 4g56_B 247 ETGNVSLVNIKNPDSA-QTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV--F-RDLSHRDFVTGVAWSPL 322 (357)
T ss_dssp SSSCEEEEESSCGGGC-EEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE--E-EECCCSSCEEEEEECSS
T ss_pred cccceeEEECCCCcEe-EEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE--e-EECCCCCCEEEEEEeCC
Confidence 9999999999987654 55667877776554 555 6899999999999999998873 3 4458999999999998
Q ss_pred CCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 405 DDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 405 ~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
++. +|++++.||+|++|++...
T Consensus 323 d~~--------~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 323 DHS--------KFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp STT--------EEEEEETTSCEEEEECC--
T ss_pred CCC--------EEEEEcCCCeEEEEECCCC
Confidence 677 8999999999999999765
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.8e-41 Score=319.20 Aligned_cols=286 Identities=20% Similarity=0.309 Sum_probs=234.3
Q ss_pred ceeeeeeeeecCcEEEEEE--------cCCEEEEeeCCCcEEEEeCCc---------cccccccCccCEEEEEec--CCE
Q 047728 100 NVLIGSLVREEGHIYSLAA--------AGDLLYTGSDSKNIRVWKNQR---------EFSGFKSNSGLVKAIVIS--NEK 160 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~--------~~~~l~tgs~dg~v~vwd~~~---------~~~~~~~h~~~V~~i~~~--~~~ 160 (474)
..+...|.+|++.|+++++ ++++|++|+.|++|++||... ....+.+|...|.+++|+ +.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 4567889999999999988 578999999999999999542 345678999999999998 679
Q ss_pred EEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC
Q 047728 161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW 240 (474)
Q Consensus 161 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~ 240 (474)
|++|+.|++|++||+.+++... .+.+|...|.+++|+|++++|++++.
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~--------------------------------~~~~h~~~v~~v~~sp~~~~l~s~~~ 138 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYK--------------------------------RFVGHQSEVYSVAFSPDNRQILSAGA 138 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEE--------------------------------EEECCCSCEEEEEECSSTTEEEEEET
T ss_pred EEEEcCCCcEEEEECCCCcEEE--------------------------------EEcCCCCcEEEEEECCCCCEEEEEcC
Confidence 9999999999999998875432 34569999999999999999999999
Q ss_pred CCcEEEEEcCCcceeeeee---ecCcceeEEEecCCC-----------eEEEeeCCCcEEEEEcccCCCceeeeeeeeee
Q 047728 241 DKTFKVWRTSDYKCLESVI---AHDDAVNSIVAGFDG-----------LVFTGSADGTVKVWRRELQGKGTKHFFSQTLL 306 (474)
Q Consensus 241 dg~i~iwd~~~~~~~~~~~---~~~~~v~~v~~~~~~-----------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 306 (474)
|++|++||+.. ....... .|...|.+++|+|++ .+++++.|+.|++||... . ....+.
T Consensus 139 d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~-----~~~~~~ 210 (343)
T 2xzm_R 139 EREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--Q-----IRYTFK 210 (343)
T ss_dssp TSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--E-----EEEEEE
T ss_pred CCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--c-----eeEEEc
Confidence 99999999974 3333333 688899999999874 799999999999999432 1 345667
Q ss_pred cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee-eecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceE
Q 047728 307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL-RGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHI 385 (474)
Q Consensus 307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~ 385 (474)
.|...|.+++|+|++++|++++.|+.|++||+.........+ .++....+++++++.+++++ .|+.|++||+.+.+..
T Consensus 211 ~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 211 AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKA 289 (343)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSC
T ss_pred CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCC
Confidence 899999999999999999999999999999995443333333 34455567777888887655 5888999999876543
Q ss_pred EEEeec-----------CCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 386 CLSMLT-----------GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 386 ~~~~~~-----------~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
.+..+. +|...|.+++|+|++. +|++|+.||.|++|++.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--------~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 290 PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK--------KLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC--------CEEEEETTSEEEEEEEEEE
T ss_pred ceEEeecCcchhhhhhcCCCCceEEEEECCCCC--------eEEEecCCceEEEEEEEcc
Confidence 222333 6888999999999999 8999999999999999765
No 16
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.5e-41 Score=313.44 Aligned_cols=286 Identities=23% Similarity=0.403 Sum_probs=245.3
Q ss_pred cceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEE
Q 047728 99 PNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRV 172 (474)
Q Consensus 99 ~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~v 172 (474)
...+..++.+|.+.|++++++ +++|++|+.||.|++|+.. +....+.+|...|.+++|+ +++|++++.||.|++
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 346778899999999999987 7899999999999999954 5567788999999999998 679999999999999
Q ss_pred EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc
Q 047728 173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY 252 (474)
Q Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 252 (474)
||+.+++... .+.+|...|.+++|+|++++|++|+.|+.|++||++++
T Consensus 92 wd~~~~~~~~--------------------------------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 139 (312)
T 4ery_A 92 WDVSSGKCLK--------------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 139 (312)
T ss_dssp EETTTCCEEE--------------------------------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EECCCCcEEE--------------------------------EEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Confidence 9998875432 23459999999999999999999999999999999999
Q ss_pred ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC
Q 047728 253 KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG 331 (474)
Q Consensus 253 ~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 331 (474)
+++..+..|..+|.+++|+|++ .+++++.||.|++||++.... .......+...+..++|+|++++|++++.|+
T Consensus 140 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
T 4ery_A 140 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----LKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214 (312)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEEECCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----eeEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence 9999999999999999999998 899999999999999986542 2222345667899999999999999999999
Q ss_pred cEEEeecCcccccceeeeecceee----EEEE-ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728 332 LVNFWERELNLSHGGVLRGHKLAI----LCLV-TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD 406 (474)
Q Consensus 332 ~i~v~d~~~~~~~~~~~~~~~~~v----~~~~-~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 406 (474)
.|++||++++... ..+.+|.... ..+. +++.+|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|++
T Consensus 215 ~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~p~~ 291 (312)
T 4ery_A 215 TLKLWDYSKGKCL-KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE--IVQKLQGHTDVVISTACHPTE 291 (312)
T ss_dssp EEEEEETTTTEEE-EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC--EEEEECCCSSCEEEEEECSSS
T ss_pred eEEEEECCCCcEE-EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch--hhhhhhccCCcEEEEeecCcC
Confidence 9999999887654 3344454322 2333 468899999999999999999887 567889999999999999999
Q ss_pred ccccccceEEEEEec--CCCcEEEEEcc
Q 047728 407 ESLSREKRWILYSGS--LDKSVKMWRVS 432 (474)
Q Consensus 407 ~~~~~~~~~~l~s~s--~Dg~i~vw~~~ 432 (474)
. +|++++ .|++|++|+..
T Consensus 292 ~--------~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 292 N--------IIASAALENDKTIKLWKSD 311 (312)
T ss_dssp S--------EEEEEECTTTCCEEEEECC
T ss_pred C--------ceEEEEccCCccEEEecCC
Confidence 8 888886 69999999964
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-41 Score=316.23 Aligned_cols=274 Identities=23% Similarity=0.309 Sum_probs=237.8
Q ss_pred cccccCccCEEEEEec------CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccce
Q 047728 142 SGFKSNSGLVKAIVIS------NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGL 215 (474)
Q Consensus 142 ~~~~~h~~~V~~i~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (474)
...++|.+.|.+++|+ +++|++|+.|++|+||++........ ..
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~------------------------------~~ 75 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ------------------------------WS 75 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE------------------------------EE
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee------------------------------ee
Confidence 3557899999999996 35899999999999999976543211 12
Q ss_pred eeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCC
Q 047728 216 WIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQG 294 (474)
Q Consensus 216 ~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~ 294 (474)
+.+|...|.+++|++++.++++++.|++|++||+.+++++..+..|...+.+++|+|++ .|++++.||.|++||++...
T Consensus 76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~ 155 (321)
T 3ow8_A 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK 155 (321)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS
T ss_pred eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc
Confidence 45699999999999999999999999999999999999999999999999999999999 99999999999999998654
Q ss_pred CceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCC
Q 047728 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADM 372 (474)
Q Consensus 295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg 372 (474)
. ...+..+...|.+++|+|++++|++++.|+.|++||++++... ..+.+|...+ +++++++++|++|+.|+
T Consensus 156 ~------~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 156 K------EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL-HTLEGHAMPIRSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp E------EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-EEECCCSSCCCEEEECTTSCEEEEECTTS
T ss_pred e------eEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-EEEcccCCceeEEEEcCCCCEEEEEcCCC
Confidence 3 4456677888999999999999999999999999999887654 4556777665 56667899999999999
Q ss_pred cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCC
Q 047728 373 SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGV 452 (474)
Q Consensus 373 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 452 (474)
.|++||++..+ ....+.+|...|.+++|+|++. +|++++.|++|++||+.++ .+...+.+|..
T Consensus 229 ~i~iwd~~~~~--~~~~~~~h~~~v~~~~~sp~~~--------~l~s~s~D~~v~iwd~~~~-------~~~~~~~~h~~ 291 (321)
T 3ow8_A 229 YIKIYDVQHAN--LAGTLSGHASWVLNVAFCPDDT--------HFVSSSSDKSVKVWDVGTR-------TCVHTFFDHQD 291 (321)
T ss_dssp CEEEEETTTCC--EEEEECCCSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTTT-------EEEEEECCCSS
T ss_pred eEEEEECCCcc--eeEEEcCCCCceEEEEECCCCC--------EEEEEeCCCcEEEEeCCCC-------EEEEEEcCCCC
Confidence 99999999887 4678899999999999999999 9999999999999999876 56677888999
Q ss_pred CCCccccCCCCCcCCceeecc
Q 047728 453 APNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 453 ~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
.|.++ +|+|||++|+++
T Consensus 292 ~v~~v----~~s~~g~~l~s~ 308 (321)
T 3ow8_A 292 QVWGV----KYNGNGSKIVSV 308 (321)
T ss_dssp CEEEE----EECTTSSEEEEE
T ss_pred cEEEE----EECCCCCEEEEE
Confidence 99998 667788888765
No 18
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2e-41 Score=327.99 Aligned_cols=282 Identities=23% Similarity=0.400 Sum_probs=244.4
Q ss_pred EEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEe
Q 047728 133 RVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVR 209 (474)
Q Consensus 133 ~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (474)
..|... .....+.+|.+.|++++|+ +.+|++|+.||+|++||+.+++...
T Consensus 92 ~~~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~--------------------------- 144 (410)
T 1vyh_C 92 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--------------------------- 144 (410)
T ss_dssp CCCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---------------------------
T ss_pred cccccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---------------------------
Confidence 345432 3356678999999999998 5799999999999999999876532
Q ss_pred eeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEE
Q 047728 210 RHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVW 288 (474)
Q Consensus 210 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iw 288 (474)
.+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .|++|+.|+.|++|
T Consensus 145 -----~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~w 219 (410)
T 1vyh_C 145 -----TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219 (410)
T ss_dssp -----EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred -----EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 345699999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred EcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe--c-----
Q 047728 289 RRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT--A----- 361 (474)
Q Consensus 289 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--~----- 361 (474)
|++.+. ....+.+|...|.+++++|++.+|++++.|+.|++||+++.... ..+.+|...+.++.+ +
T Consensus 220 d~~~~~------~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~ 292 (410)
T 1vyh_C 220 EVQTGY------CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK-AELREHRHVVECISWAPESSYSS 292 (410)
T ss_dssp ETTTCC------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECCSCGGGG
T ss_pred ECCCCc------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee-eEecCCCceEEEEEEcCcccccc
Confidence 998654 35567789999999999999999999999999999999877554 455677777766654 2
Q ss_pred ---------------CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcE
Q 047728 362 ---------------GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSV 426 (474)
Q Consensus 362 ---------------~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i 426 (474)
+.+|++|+.|+.|++||+++++ ++..+.+|...|++++|+|++. +|++|+.||.|
T Consensus 293 ~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~g~--------~l~s~s~D~~i 362 (410)
T 1vyh_C 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHSGGK--------FILSCADDKTL 362 (410)
T ss_dssp GGGCCSCC-------CCEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSS--------CEEEEETTTEE
T ss_pred hhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc--eEEEEECCCCcEEEEEEcCCCC--------EEEEEeCCCeE
Confidence 5699999999999999999887 5678889999999999999999 89999999999
Q ss_pred EEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 427 KMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 427 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
++||+.++ .+...+.+|...|.++ +|+||+.+++++|
T Consensus 363 ~vwd~~~~-------~~~~~~~~h~~~v~~l----~~~~~~~~l~sgs 399 (410)
T 1vyh_C 363 RVWDYKNK-------RCMKTLNAHEHFVTSL----DFHKTAPYVVTGS 399 (410)
T ss_dssp EEECCTTS-------CCCEEEECCSSCEEEE----EECSSSSCEEEEE
T ss_pred EEEECCCC-------ceEEEEcCCCCcEEEE----EEcCCCCEEEEEe
Confidence 99999776 4556778999999999 5677788887764
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.4e-41 Score=341.31 Aligned_cols=309 Identities=27% Similarity=0.453 Sum_probs=265.2
Q ss_pred ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728 100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWK 174 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd 174 (474)
.+++..+.+|...|.++++. +++|++++.|+.|++|+.. +.+..+.+|...|.+++|+ ++.|++++.|++|++|+
T Consensus 252 ~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~ 331 (577)
T 2ymu_A 252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 45677889999999998876 7899999999999999954 5567788999999999998 66999999999999999
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC 254 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 254 (474)
+...... .+.+|...|.+++|+|++++|++++.|+.|++||. +++.
T Consensus 332 ~~~~~~~---------------------------------~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~ 377 (577)
T 2ymu_A 332 RNGQHLQ---------------------------------TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQL 377 (577)
T ss_dssp TTSCEEE---------------------------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCE
T ss_pred CCCCeeE---------------------------------EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCE
Confidence 8654321 23448899999999999999999999999999995 6788
Q ss_pred eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728 255 LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV 333 (474)
Q Consensus 255 ~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 333 (474)
+..+..|...|.+++|+|++ .|++++.|+.|++||... . ....+..|...|++++|+|++++|++++.|+.|
T Consensus 378 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~--~-----~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v 450 (577)
T 2ymu_A 378 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--Q-----LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV 450 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC--C-----EEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC--C-----EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence 88999999999999999999 899999999999999542 1 356677899999999999999999999999999
Q ss_pred EEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccc
Q 047728 334 NFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSR 411 (474)
Q Consensus 334 ~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 411 (474)
++||.... ....+.+|...+. ++++++++|++++.|+.|++||.. ++ ++..+.+|...|++++|+|+++
T Consensus 451 ~~w~~~~~--~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~--~~~~~~~h~~~v~~l~~s~dg~---- 521 (577)
T 2ymu_A 451 KLWNRNGQ--LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVRGVAFSPDGQ---- 521 (577)
T ss_dssp EEEETTSC--EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SC--EEEEEECCSSCEEEEEECTTSS----
T ss_pred EEEECCCC--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CC--EEEEEeCCCCCEEEEEEcCCCC----
Confidence 99997543 3345667777764 556789999999999999999964 44 4678899999999999999999
Q ss_pred cceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 412 EKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 412 ~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
+|++++.||.|+|||.. + .....+.+|...|+++ +|+|||++|+++|
T Consensus 522 ----~l~s~~~dg~v~lwd~~-~-------~~~~~~~~h~~~v~~~----~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 522 ----TIASASDDKTVKLWNRN-G-------QLLQTLTGHSSSVWGV----AFSPDGQTIASAS 568 (577)
T ss_dssp ----CEEEEETTSEEEEECTT-S-------CEEEEEECCSSCEEEE----EECTTSSCEEEEE
T ss_pred ----EEEEEECcCEEEEEeCC-C-------CEEEEEcCCCCCEEEE----EEcCCCCEEEEEe
Confidence 89999999999999963 3 4566788999999999 6788999998764
No 20
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4e-40 Score=310.83 Aligned_cols=278 Identities=17% Similarity=0.291 Sum_probs=235.4
Q ss_pred ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728 139 REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW 216 (474)
Q Consensus 139 ~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (474)
+....+.+|.+.|.+++|+ +++|++|+.||+|++||+.+++... .+
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~--------------------------------~~ 93 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH--------------------------------AI 93 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE--------------------------------EE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce--------------------------------Ee
Confidence 3456688999999999998 6699999999999999998776432 22
Q ss_pred eeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc----ceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEccc
Q 047728 217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY----KCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRREL 292 (474)
Q Consensus 217 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~ 292 (474)
..|...|.+++|+|++++|++|+.|+.|++||+.+. +....+.+|...|.++.|.+++.+++++.|+.|++||++.
T Consensus 94 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~ 173 (340)
T 1got_B 94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173 (340)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCC
Confidence 348889999999999999999999999999999875 3556778899999999999999999999999999999975
Q ss_pred CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeC
Q 047728 293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSA 370 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~ 370 (474)
.. ....+.+|...|.+++|+|++++|++++.|+.|++||++++... ..+.+|...+ ++++|++++|++|+.
T Consensus 174 ~~------~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~-~~~~~h~~~v~~v~~~p~~~~l~s~s~ 246 (340)
T 1got_B 174 GQ------QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-QTFTGHESDINAICFFPNGNAFATGSD 246 (340)
T ss_dssp TE------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE-EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred Cc------EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeE-EEEcCCcCCEEEEEEcCCCCEEEEEcC
Confidence 43 34566789999999999999999999999999999999887554 4566777666 455678999999999
Q ss_pred CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCC
Q 047728 371 DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH 450 (474)
Q Consensus 371 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 450 (474)
||.|++||++..+.........+...|++++|+|++. +|++|+.||.|++||+.+. .....+.+|
T Consensus 247 d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--------~l~~g~~d~~i~vwd~~~~-------~~~~~~~~h 311 (340)
T 1got_B 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR--------LLLAGYDDFNCNVWDALKA-------DRAGVLAGH 311 (340)
T ss_dssp TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS--------EEEEEETTSEEEEEETTTC-------CEEEEEECC
T ss_pred CCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC--------EEEEECCCCeEEEEEcccC-------cEeeEeecC
Confidence 9999999999887443333334456899999999999 9999999999999999876 455678899
Q ss_pred CCCCCccccCCCCCcCCceeeccC
Q 047728 451 GVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 451 ~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
...|.++ +|+|||++++++|
T Consensus 312 ~~~v~~~----~~s~dg~~l~s~s 331 (340)
T 1got_B 312 DNRVSCL----GVTDDGMAVATGS 331 (340)
T ss_dssp SSCEEEE----EECTTSSCEEEEE
T ss_pred CCcEEEE----EEcCCCCEEEEEc
Confidence 9999999 6788999888764
No 21
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-39 Score=318.10 Aligned_cols=311 Identities=25% Similarity=0.409 Sum_probs=260.7
Q ss_pred eeeeeeeecCc-EEEEEEcCCEEEEeeCCCcEEEEeC--CccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCC
Q 047728 102 LIGSLVREEGH-IYSLAAAGDLLYTGSDSKNIRVWKN--QREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSK 178 (474)
Q Consensus 102 ~~~~l~~h~~~-i~~~~~~~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~ 178 (474)
....+.+|.+. +.|+++++++|++|+.||+|++||. .+.+..+.+|...|.++.++++.|++|+.||+|++||+.++
T Consensus 110 ~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 189 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG 189 (445)
T ss_dssp CCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred eeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC
Confidence 34578899886 6899999999999999999999995 46677888999999999999999999999999999999887
Q ss_pred CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee
Q 047728 179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV 258 (474)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 258 (474)
+... .+.+|...|.+++|+ ++.|++|+.|+.|++||+.+++.+..+
T Consensus 190 ~~~~--------------------------------~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~ 235 (445)
T 2ovr_B 190 ECIH--------------------------------TLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL 235 (445)
T ss_dssp EEEE--------------------------------EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred cEEE--------------------------------EECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 5432 234599999999995 568999999999999999999999999
Q ss_pred eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728 259 IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER 338 (474)
Q Consensus 259 ~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~ 338 (474)
..|...|.++.+. ...+++++.||.|++||++... ....+..|...|.+++| ++.++++++.|+.|++||+
T Consensus 236 ~~~~~~v~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~ 306 (445)
T 2ovr_B 236 MGHVAAVRCVQYD-GRRVVSGAYDFMVKVWDPETET------CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV 306 (445)
T ss_dssp ECCSSCEEEEEEC-SSCEEEEETTSCEEEEEGGGTE------EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEET
T ss_pred cCCcccEEEEEEC-CCEEEEEcCCCEEEEEECCCCc------EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEEC
Confidence 9999999999992 3399999999999999998643 35566788999999999 7899999999999999999
Q ss_pred CcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC---CccceEEEEEeeCCccccccceE
Q 047728 339 ELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG---HSGPVKCLAVEKDDESLSREKRW 415 (474)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~~~~~~~ 415 (474)
+++... ..+.+|...+.++.++++++++|+.||.|++||+++++ ++..+.. |..+|++++|++ .
T Consensus 307 ~~~~~~-~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~--~-------- 373 (445)
T 2ovr_B 307 ETGNCI-HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ--CLQTLQGPNKHQSAVTCLQFNK--N-------- 373 (445)
T ss_dssp TTCCEE-EEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCC--EEEEECSTTSCSSCEEEEEECS--S--------
T ss_pred CCCCEE-EEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc--EEEEEccCCCCCCCEEEEEECC--C--------
Confidence 987655 45678888999999999999999999999999999887 4556665 889999999964 4
Q ss_pred EEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 416 ILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 416 ~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
+|++|+.||.|++||+.+++..... ......+|...|.++ +|+|||.+++.++
T Consensus 374 ~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~v~~~----~~s~~~~~la~~~ 426 (445)
T 2ovr_B 374 FVITSSDDGTVKLWDLKTGEFIRNL--VTLESGGSGGVVWRI----RASNTKLVCAVGS 426 (445)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEE--EECTTGGGTCEEEEE----EECSSEEEEEEEC
T ss_pred EEEEEeCCCeEEEEECCCCceeeee--eccccCCCCceEEEE----EecCCEEEEEEcc
Confidence 8999999999999999987432110 001114566777777 6677888877653
No 22
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8.6e-39 Score=301.34 Aligned_cols=290 Identities=22% Similarity=0.379 Sum_probs=235.0
Q ss_pred cceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCc-------cccccccCccCEEEEEec--CCEEEEEeC
Q 047728 99 PNVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQR-------EFSGFKSNSGLVKAIVIS--NEKIFSGHQ 166 (474)
Q Consensus 99 ~~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~-------~~~~~~~h~~~V~~i~~~--~~~l~s~~~ 166 (474)
...+.++|.+|++.|++++++ +++|+||+.||+|+|||... ....+.+|...|.+++|+ +++|++++.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 346778899999999999986 57999999999999999542 345678999999999998 679999999
Q ss_pred CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEE
Q 047728 167 DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKV 246 (474)
Q Consensus 167 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i 246 (474)
|+.|++|+......... ...+...+..+.+++++.+|++++.|+.+++
T Consensus 107 d~~i~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~ 154 (340)
T 4aow_A 107 DGTLRLWDLTTGTTTRR--------------------------------FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL 154 (340)
T ss_dssp TSEEEEEETTTTEEEEE--------------------------------EECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred cccceEEeecccceeee--------------------------------ecCCCCceeEEEEeecCccceeecCCCeEEE
Confidence 99999999987654321 2236778889999999999999999999999
Q ss_pred EEcCCcce-eeeeeecCcceeEEEecCCC---eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC
Q 047728 247 WRTSDYKC-LESVIAHDDAVNSIVAGFDG---LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA 322 (474)
Q Consensus 247 wd~~~~~~-~~~~~~~~~~v~~v~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 322 (474)
||+..... ...+..|...+..+++++++ .+++++.|+.|++||++... ....+..|...|++++|+|+++
T Consensus 155 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~------~~~~~~~h~~~v~~~~~s~~~~ 228 (340)
T 4aow_A 155 WNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK------LKTNHIGHTGYLNTVTVSPDGS 228 (340)
T ss_dssp ECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEECTTSS
T ss_pred EEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc------eeeEecCCCCcEEEEEECCCCC
Confidence 99876544 34456789999999998876 68899999999999998543 3556678999999999999999
Q ss_pred EEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEE-------EEeecCCcc
Q 047728 323 IVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHIC-------LSMLTGHSG 395 (474)
Q Consensus 323 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~-------~~~~~~h~~ 395 (474)
+|++++.|+.|++||+++...............+++++++. +++++.|+.|++||+++..... .....+|..
T Consensus 229 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~ 307 (340)
T 4aow_A 229 LCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP 307 (340)
T ss_dssp EEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCC
T ss_pred EEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCC
Confidence 99999999999999999876664443333344455556554 5566679999999998775321 122357889
Q ss_pred ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 396 PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 396 ~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
.|++++|+|+++ +|++|+.||.|+|||++++.
T Consensus 308 ~v~~l~~s~dg~--------~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 308 QCTSLAWSADGQ--------TLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CEEEEEECTTSS--------EEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEECCCCC--------EEEEEeCCCEEEEEeCCCcC
Confidence 999999999999 99999999999999999873
No 23
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-38 Score=306.05 Aligned_cols=286 Identities=23% Similarity=0.376 Sum_probs=227.9
Q ss_pred eeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCc------------------cCEEEEEec--CCE
Q 047728 105 SLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNS------------------GLVKAIVIS--NEK 160 (474)
Q Consensus 105 ~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~------------------~~V~~i~~~--~~~ 160 (474)
...+|.+.|.+++|+ |++||+|+ ++.++||+.. +.+..+..|. ..|.+++|+ +++
T Consensus 59 ~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~ 137 (393)
T 1erj_A 59 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 137 (393)
T ss_dssp EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred EecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence 344799999998886 88999987 6899999854 3333343332 349999998 679
Q ss_pred EEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC
Q 047728 161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW 240 (474)
Q Consensus 161 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~ 240 (474)
|++|+.|++|++||+.+++.. ..+.+|...|.+++|+|++++|++++.
T Consensus 138 l~s~~~d~~i~iwd~~~~~~~--------------------------------~~~~~h~~~v~~~~~~p~~~~l~s~s~ 185 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENRKIV--------------------------------MILQGHEQDIYSLDYFPSGDKLVSGSG 185 (393)
T ss_dssp EEEEETTSCEEEEETTTTEEE--------------------------------EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEcCCCeEEEEECCCCcEE--------------------------------EEEccCCCCEEEEEEcCCCCEEEEecC
Confidence 999999999999999876532 134569999999999999999999999
Q ss_pred CCcEEEEEcCCcceeeeeeecCcceeEEEecC-CC-eEEEeeCCCcEEEEEcccCCCceeee-eeeeeecccccEEEEEE
Q 047728 241 DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF-DG-LVFTGSADGTVKVWRRELQGKGTKHF-FSQTLLKQECAVTALAI 317 (474)
Q Consensus 241 dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~l~~ 317 (474)
|++|++||++++++...+. +...+.+++++| ++ ++++|+.|+.|++||++......... ......+|...|.+++|
T Consensus 186 d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 264 (393)
T 1erj_A 186 DRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 264 (393)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred CCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEE
Confidence 9999999999998887775 567899999999 66 89999999999999987644211100 01122578899999999
Q ss_pred cCCCCEEEEEcCCCcEEEeecCcccc-----------cceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECCCCce
Q 047728 318 SPDAAIVYCGSSDGLVNFWERELNLS-----------HGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRKENEH 384 (474)
Q Consensus 318 ~~~~~~l~~~~~dg~i~v~d~~~~~~-----------~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~ 384 (474)
+|++++|++++.|+.|++||++.... ....+.+|...+.++ ++++.+|++|+.|+.|++||+.+++
T Consensus 265 ~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~- 343 (393)
T 1erj_A 265 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN- 343 (393)
T ss_dssp CTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC-
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe-
Confidence 99999999999999999999876422 123455777766554 5679999999999999999999887
Q ss_pred EEEEeecCCccceEEEEEee------CCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 385 ICLSMLTGHSGPVKCLAVEK------DDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 385 ~~~~~~~~h~~~v~~l~~~~------~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
++..+.+|...|.+++|++ ++. +|++|+.||+|+||++...
T Consensus 344 -~~~~l~~h~~~v~~v~~~~~~~~~p~~~--------~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 344 -PLLMLQGHRNSVISVAVANGSSLGPEYN--------VFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp -EEEEEECCSSCEEEEEECSSCTTCTTCE--------EEEEEETTSEEEEEEEEEC
T ss_pred -EEEEECCCCCCEEEEEecCCcCcCCCCC--------EEEEECCCCcEEECccccc
Confidence 4678899999999999987 455 8999999999999999764
No 24
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.3e-39 Score=323.81 Aligned_cols=309 Identities=26% Similarity=0.451 Sum_probs=263.2
Q ss_pred ceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728 100 NVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWK 174 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd 174 (474)
...+..+.+|.+.|.+++++ +++|++++.|+.|++||.. +.+..+.+|...|.+++|. +..|++++.|+.|++|+
T Consensus 211 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~ 290 (577)
T 2ymu_A 211 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEe
Confidence 45677889999999999886 7899999999999999954 5677788999999999998 66999999999999999
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC 254 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 254 (474)
...... ..+.+|...|.+++|+|++++|++++.|+.|++||... +.
T Consensus 291 ~~~~~~---------------------------------~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~ 336 (577)
T 2ymu_A 291 RNGQLL---------------------------------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QH 336 (577)
T ss_dssp TTSCEE---------------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CE
T ss_pred CCCcEE---------------------------------EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-Ce
Confidence 654211 12345999999999999999999999999999999754 55
Q ss_pred eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728 255 LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV 333 (474)
Q Consensus 255 ~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 333 (474)
+..+..|...|.+++++|++ .+++++.|+.|++||... . ....+..|...|.+++|+|++++|++++.|+.|
T Consensus 337 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--~-----~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v 409 (577)
T 2ymu_A 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--Q-----LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 409 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--C-----EEEEEECCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--C-----EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEE
Confidence 67788899999999999999 899999999999999642 1 355677899999999999999999999999999
Q ss_pred EEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccc
Q 047728 334 NFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSR 411 (474)
Q Consensus 334 ~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 411 (474)
++||.... ....+.+|...+. ++++++++|++++.|+.|++||.... .+..+.+|...|++++|+|+++
T Consensus 410 ~~~~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~---~~~~~~~~~~~v~~~~~spd~~---- 480 (577)
T 2ymu_A 410 KLWNRNGQ--LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSPDGQ---- 480 (577)
T ss_dssp EEECTTCC--EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC---EEEEEECCSSCEEEEEECTTSC----
T ss_pred EEEeCCCC--EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC---EEEEEcCCCCCEEEEEEcCCCC----
Confidence 99996533 3355667877775 45678999999999999999997543 4678889999999999999999
Q ss_pred cceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 412 EKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 412 ~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
+|++++.|+.|++|+.. + .....+.+|...|+++ +|+|||++|++++
T Consensus 481 ----~las~~~d~~i~iw~~~-~-------~~~~~~~~h~~~v~~l----~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 481 ----TIASASDDKTVKLWNRN-G-------QLLQTLTGHSSSVRGV----AFSPDGQTIASAS 527 (577)
T ss_dssp ----EEEEEETTSEEEEEETT-S-------CEEEEEECCSSCEEEE----EECTTSSCEEEEE
T ss_pred ----EEEEEeCCCEEEEEcCC-C-------CEEEEEeCCCCCEEEE----EEcCCCCEEEEEE
Confidence 99999999999999963 3 4566788999999999 6788999988753
No 25
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-38 Score=302.01 Aligned_cols=278 Identities=17% Similarity=0.242 Sum_probs=233.2
Q ss_pred ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728 139 REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW 216 (474)
Q Consensus 139 ~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (474)
+....+.+|.+.|.+++|+ +.+|++|+.||+|++||..+++... .+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~--------------------------------~~ 102 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH--------------------------------AV 102 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--------------------------------EE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce--------------------------------EE
Confidence 3455678999999999998 6799999999999999988765432 12
Q ss_pred eeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc------ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEE
Q 047728 217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY------KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWR 289 (474)
Q Consensus 217 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd 289 (474)
..|...|.+++|+|++.+|++|+.|+.+++|++... .....+..|...|.++.|++++ .|++++.|++|++||
T Consensus 103 ~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd 182 (354)
T 2pbi_B 103 TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWD 182 (354)
T ss_dssp ECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred ecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEe
Confidence 337788999999999999999999999999998643 3456677899999999999998 899999999999999
Q ss_pred cccCCCceeeeeeeeeecccccEEEEEEcC--CCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--EEecCCEE
Q 047728 290 RELQGKGTKHFFSQTLLKQECAVTALAISP--DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAGNLV 365 (474)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~l 365 (474)
++... ....+.+|...|.+++|+| ++++|++|+.|+.|++||++++... ..+.+|...+.+ ++|++++|
T Consensus 183 ~~~~~------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~-~~~~~h~~~v~~v~~~p~~~~l 255 (354)
T 2pbi_B 183 VESGQ------LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV-QAFETHESDVNSVRYYPSGDAF 255 (354)
T ss_dssp TTTCC------EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSEE
T ss_pred CCCCe------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEE-EEecCCCCCeEEEEEeCCCCEE
Confidence 98654 3566778999999999988 5789999999999999999987654 456678777755 45689999
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccc
Q 047728 366 FSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQH 445 (474)
Q Consensus 366 ~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~ 445 (474)
++|+.|++|++||++..+.........+...+.+++|+|++. +|++|+.|+.|++||+.++ ....
T Consensus 256 ~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--------~l~~g~~d~~i~vwd~~~~-------~~~~ 320 (354)
T 2pbi_B 256 ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR--------LLFAGYNDYTINVWDVLKG-------SRVS 320 (354)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS--------EEEEEETTSCEEEEETTTC-------SEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC--------EEEEEECCCcEEEEECCCC-------ceEE
Confidence 999999999999999887443333334456799999999999 9999999999999999876 3456
Q ss_pred cccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 446 PLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 446 ~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
.+.+|...|.++ +|+|||++|+++|
T Consensus 321 ~l~~h~~~v~~l----~~spdg~~l~sgs 345 (354)
T 2pbi_B 321 ILFGHENRVSTL----RVSPDGTAFCSGS 345 (354)
T ss_dssp EECCCSSCEEEE----EECTTSSCEEEEE
T ss_pred EEECCCCcEEEE----EECCCCCEEEEEc
Confidence 678999999999 6788999998864
No 26
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-39 Score=313.82 Aligned_cols=283 Identities=14% Similarity=0.231 Sum_probs=229.8
Q ss_pred CcEEEEEEc--CC-EEEEe----------eCCCcEEEEeCCcc----ccccccCccCEEEEEec--CCEEEEEeCCCeEE
Q 047728 111 GHIYSLAAA--GD-LLYTG----------SDSKNIRVWKNQRE----FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIR 171 (474)
Q Consensus 111 ~~i~~~~~~--~~-~l~tg----------s~dg~v~vwd~~~~----~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~ 171 (474)
..|.+++++ ++ +|++| +.||.|+|||.... ......|...|.+++|+ +++|++++.||.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 346666655 55 99999 89999999996532 22234588999999998 67999999999999
Q ss_pred EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCCcEEEEEcC
Q 047728 172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDKTFKVWRTS 250 (474)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~ 250 (474)
+|++........ . ...+.+|...|.+++|+|+ +++|++++.|+.|++||+.
T Consensus 93 vw~~~~~~~~~~-~---------------------------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 93 LYSTNEANNAIN-S---------------------------MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp EECCSSTTSCCC-E---------------------------EEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred Eeeccccccccc-c---------------------------hhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 999987321100 0 0133459999999999998 8999999999999999999
Q ss_pred Ccc------eeee---eeecCcceeEEEecCC-C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc------cccEE
Q 047728 251 DYK------CLES---VIAHDDAVNSIVAGFD-G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ------ECAVT 313 (474)
Q Consensus 251 ~~~------~~~~---~~~~~~~v~~v~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~v~ 313 (474)
+++ .... +..|...|.+++|+|+ + .+++++.||.|++||++.... ...+..+ ...|.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~~~~~v~ 218 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE------VIHLSYTSPNSGIKQQLS 218 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE------EEEECCCCCSSCCCCCEE
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc------ceEEeccccccccCCceE
Confidence 876 3333 3678999999999999 4 899999999999999986432 2233333 78899
Q ss_pred EEEEcCCC-CEEEEEcCCC---cEEEeecCcccccceeee-ecceeeEEEE--e-cCCEEEEEeCCCcEEEEECCCCceE
Q 047728 314 ALAISPDA-AIVYCGSSDG---LVNFWERELNLSHGGVLR-GHKLAILCLV--T-AGNLVFSGSADMSICIWRRKENEHI 385 (474)
Q Consensus 314 ~l~~~~~~-~~l~~~~~dg---~i~v~d~~~~~~~~~~~~-~~~~~v~~~~--~-~~~~l~sgs~dg~i~iwd~~~~~~~ 385 (474)
+++|+|++ .+|++++.|+ .|++||+++.......+. +|...+.++. + ++++|++++.|+.|++||+++++
T Consensus 219 ~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~-- 296 (416)
T 2pm9_A 219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE-- 296 (416)
T ss_dssp EEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC--
T ss_pred EEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc--
Confidence 99999987 6899999998 999999998755555666 7887776655 5 78999999999999999999887
Q ss_pred EEEeecCCccceEEEEEeeCC-ccccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728 386 CLSMLTGHSGPVKCLAVEKDD-ESLSREKRWILYSGSLDKSVKMWRVSEQAPP 437 (474)
Q Consensus 386 ~~~~~~~h~~~v~~l~~~~~~-~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~ 437 (474)
.+..+.+|...|.+++|+|++ . +|++++.|+.|++|++......
T Consensus 297 ~~~~~~~~~~~v~~~~~s~~~~~--------~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 297 QLSQFPARGNWCFKTKFAPEAPD--------LFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp EEEEEECSSSCCCCEEECTTCTT--------EEEECCSSSEEEEEESCCCCCS
T ss_pred cceeecCCCCceEEEEECCCCCC--------EEEEEecCCcEEEEEccCCCCC
Confidence 567888999999999999998 6 8999999999999999887544
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-38 Score=308.42 Aligned_cols=314 Identities=16% Similarity=0.223 Sum_probs=253.3
Q ss_pred eeeeecCcEEEEEEc--CC-EEEEeeCCCcEEEEeC----Ccc--------cccccc----------CccCEEEEEec--
Q 047728 105 SLVREEGHIYSLAAA--GD-LLYTGSDSKNIRVWKN----QRE--------FSGFKS----------NSGLVKAIVIS-- 157 (474)
Q Consensus 105 ~l~~h~~~i~~~~~~--~~-~l~tgs~dg~v~vwd~----~~~--------~~~~~~----------h~~~V~~i~~~-- 157 (474)
....|.+.|++++++ ++ +|++|+.||.|++|+. ... ...+.. |...|.+++|+
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 344566899999887 77 9999999999999998 432 222222 68899999998
Q ss_pred CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728 158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS 237 (474)
Q Consensus 158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 237 (474)
+++|++++.||.|++|+. +++.. ..+.+|...|.+++|+|++++|++
T Consensus 120 ~~~l~~~~~dg~i~i~~~-~~~~~--------------------------------~~~~~~~~~v~~~~~~~~~~~l~~ 166 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWNK-TGALL--------------------------------NVLNFHRAPIVSVKWNKDGTHIIS 166 (425)
T ss_dssp SSEEEEEETTSCEEEEET-TSCEE--------------------------------EEECCCCSCEEEEEECTTSSEEEE
T ss_pred CCEEEEEeCCCeEEEEeC-CCCee--------------------------------eeccCCCccEEEEEECCCCCEEEE
Confidence 679999999999999993 32221 123448999999999999999999
Q ss_pred EECCCcEEEEEcCCcceeeeeeecCcc---------------eeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728 238 ASWDKTFKVWRTSDYKCLESVIAHDDA---------------VNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFS 302 (474)
Q Consensus 238 ~s~dg~i~iwd~~~~~~~~~~~~~~~~---------------v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 302 (474)
++.|+.|++||+.+++.+..+..+... +.++.|++++.+++++.||.|++||++.... .
T Consensus 167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~------~ 240 (425)
T 1r5m_A 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP------T 240 (425)
T ss_dssp EETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC------S
T ss_pred EecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce------e
Confidence 999999999999999999988887776 9999999999999999999999999986543 4
Q ss_pred eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEE--EecCCEEEEEeCCCcEEEEECC
Q 047728 303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~ 380 (474)
..+..|...|.+++|+|++++|++++.|+.|++||++..... ..+..|...+.++ ++++ ++++++.|+.|++||+.
T Consensus 241 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 241 GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ-NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLK 318 (425)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS-EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETT
T ss_pred eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc-eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECC
Confidence 455678899999999999999999999999999999887554 4455676666554 5566 99999999999999999
Q ss_pred CCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCC-------------Ccccccc
Q 047728 381 ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVS-------------TTQQHPL 447 (474)
Q Consensus 381 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~-------------~~~~~~~ 447 (474)
+++ .+..+..|...|.+++|+|++. +|++++.||.|++|++.+....... ......+
T Consensus 319 ~~~--~~~~~~~~~~~i~~~~~s~~~~--------~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (425)
T 1r5m_A 319 QNT--LLALSIVDGVPIFAGRISQDGQ--------KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY 388 (425)
T ss_dssp TTE--EEEEEECTTCCEEEEEECTTSS--------EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE
T ss_pred CCc--EeEecccCCccEEEEEEcCCCC--------EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh
Confidence 887 4667888999999999999998 9999999999999999876411110 1155677
Q ss_pred cCCCC--CCCccccCCCCCcCCceeecc
Q 047728 448 EGHGV--APNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 448 ~~~~~--~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
.+|.. .|.++ +|+|||++|+++
T Consensus 389 ~~~~~~~~v~~~----~~s~~~~~l~~~ 412 (425)
T 1r5m_A 389 QSSQDNDYIFDL----SWNCAGNKISVA 412 (425)
T ss_dssp CCTTCCCCEEEE----EECTTSSEEEEE
T ss_pred cCcccCCceEEE----EccCCCceEEEE
Confidence 78866 88888 677888888654
No 28
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-37 Score=295.27 Aligned_cols=289 Identities=15% Similarity=0.246 Sum_probs=248.3
Q ss_pred CcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEE
Q 047728 98 SPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIR 171 (474)
Q Consensus 98 ~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~ 171 (474)
-.......|.+|++.|.+++++ +++|++|+.||.|++||.. +.+..+.+|...|.+++|+ +++|++++.||.|+
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred ccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 3445667799999999999986 8899999999999999944 5677888999999999998 67999999999999
Q ss_pred EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC-----CcEEE
Q 047728 172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD-----KTFKV 246 (474)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d-----g~i~i 246 (474)
+||+.+++..... .+...|.+++|+|++++|++++.+ +.|++
T Consensus 100 iwd~~~~~~~~~~---------------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~ 146 (369)
T 3zwl_B 100 LWDVSNGQCVATW---------------------------------KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINI 146 (369)
T ss_dssp EEETTTCCEEEEE---------------------------------ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEE
T ss_pred EEECCCCcEEEEe---------------------------------ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEE
Confidence 9999987654322 177789999999999999999999 99999
Q ss_pred EEcCCcc-----------eeeeeeecCc--ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccE
Q 047728 247 WRTSDYK-----------CLESVIAHDD--AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAV 312 (474)
Q Consensus 247 wd~~~~~-----------~~~~~~~~~~--~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 312 (474)
||+.... .+..+..|.. .+.+++|+|++ .+++++.||.|++||++.... ....+..|...|
T Consensus 147 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~v 221 (369)
T 3zwl_B 147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE-----YVDSIDLHEKSI 221 (369)
T ss_dssp EEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE-----EEEEEECCSSCE
T ss_pred EEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE-----eEEEEecCCCce
Confidence 9997654 3344555655 89999999999 899999999999999986332 356667789999
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCC--------------cEEEEE
Q 047728 313 TALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADM--------------SICIWR 378 (474)
Q Consensus 313 ~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg--------------~i~iwd 378 (474)
.+++|+|++++|++++.|+.|++||+++...............++++++++++++++.++ .+++||
T Consensus 222 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 222 SDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred eEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 999999999999999999999999999887665555444555677888999999999988 899999
Q ss_pred CCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 379 RKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 379 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
..+++ .+..+.+|...|++++|+|+++ +|++++.||.|++|++..+
T Consensus 302 ~~~~~--~~~~~~~~~~~v~~~~~s~~~~--------~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 302 KIFEE--EIGRVQGHFGPLNTVAISPQGT--------SYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp TTTCC--EEEEEECCSSCEEEEEECTTSS--------EEEEEETTSEEEEEEECHH
T ss_pred cCCCc--chhheecccCcEEEEEECCCCC--------EEEEEcCCCeEEEEECccc
Confidence 99887 5678889999999999999999 9999999999999999875
No 29
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.7e-39 Score=310.28 Aligned_cols=315 Identities=15% Similarity=0.176 Sum_probs=244.2
Q ss_pred EEEEEcCCEEEEeeCCCcEEEEeCCcc--ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeeccc
Q 047728 114 YSLAAAGDLLYTGSDSKNIRVWKNQRE--FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTL 189 (474)
Q Consensus 114 ~~~~~~~~~l~tgs~dg~v~vwd~~~~--~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 189 (474)
.++++++++|++|+.||.|++||.... ...+..| ..+....++ +++|++++.||.|++||+.+++...
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------- 133 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE------- 133 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE-------
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee-------
Confidence 356777999999999999999996633 3344444 333333444 7799999999999999998664321
Q ss_pred CccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEE
Q 047728 190 PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV 269 (474)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~ 269 (474)
.+.+|...|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++
T Consensus 134 -------------------------~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 188 (420)
T 3vl1_A 134 -------------------------IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIA 188 (420)
T ss_dssp -------------------------ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEE
T ss_pred -------------------------ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEE
Confidence 2235999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccc---------------------ccEEEEEEcCCCCEEEEE
Q 047728 270 AGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQE---------------------CAVTALAISPDAAIVYCG 327 (474)
Q Consensus 270 ~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------------------~~v~~l~~~~~~~~l~~~ 327 (474)
|+|++ .|++++.|+.|++||++...... .......+. ..+.+++|+|++++|+++
T Consensus 189 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 265 (420)
T 3vl1_A 189 IIDRGRNVLSASLDGTIRLWECGTGTTIH---TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG 265 (420)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTTEEEE---EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEE
T ss_pred EcCCCCEEEEEcCCCcEEEeECCCCceeE---EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEE
Confidence 99999 89999999999999997543211 111111233 344455567899999999
Q ss_pred cCCCcEEEeecCcccccceeeeecceeeEEE--EecCC-EEEEEeCCCcEEEEECCCCceEEEEeecC-CccceEEEEEe
Q 047728 328 SSDGLVNFWERELNLSHGGVLRGHKLAILCL--VTAGN-LVFSGSADMSICIWRRKENEHICLSMLTG-HSGPVKCLAVE 403 (474)
Q Consensus 328 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~--~~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~~ 403 (474)
+.||.|++||+++..........|...+.++ ++++. +|++|+.||.|++||+++++.. +..+.. |...|.++.+
T Consensus 266 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~~~~v~~~~~- 343 (420)
T 3vl1_A 266 HVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP-VGEFLINEGTPINNVYF- 343 (420)
T ss_dssp ETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC-SEEEEESTTSCEEEEEE-
T ss_pred cCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc-hhhhhccCCCCceEEEe-
Confidence 9999999999998877766666677666555 45677 9999999999999999987542 344554 6778888855
Q ss_pred eCCccccccceEEEEEecCCCcEEEEEccCCCCCCCC--CcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 404 KDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVS--TTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 404 ~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
+++. +|++++.|+.|++|++.....+... ......+.+|...+.+++|+|..+.||++++.++
T Consensus 344 ~~~~--------~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~ 408 (420)
T 3vl1_A 344 AAGA--------LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK 408 (420)
T ss_dssp ETTE--------EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET
T ss_pred CCCC--------EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcC
Confidence 5777 8999999999999999875433221 1233346678899999988888887887888764
No 30
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3e-38 Score=298.54 Aligned_cols=290 Identities=20% Similarity=0.288 Sum_probs=230.2
Q ss_pred cccccccCcc-CEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728 140 EFSGFKSNSG-LVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW 216 (474)
Q Consensus 140 ~~~~~~~h~~-~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (474)
.+..+.+|.. .|.+++|+ +++|++|+.|++|+||++..+....... ..
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~-----------------------------~~ 57 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV-----------------------------LS 57 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEE-----------------------------EC
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeee-----------------------------ec
Confidence 3456778987 89999998 6799999999999999998764321111 12
Q ss_pred eeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc--ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccC
Q 047728 217 IKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY--KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQ 293 (474)
Q Consensus 217 ~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~ 293 (474)
.+|...|.+++|+|++++|++|+.|++|++||+.++ +++..+.+|...|.+++|+|++ +|++++.|+.|++||++..
T Consensus 58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~ 137 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE 137 (345)
T ss_dssp SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence 359999999999999999999999999999999876 4677888999999999999999 9999999999999999754
Q ss_pred CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc-cceeeeecceeeEE--EEecCCEEEEEeC
Q 047728 294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS-HGGVLRGHKLAILC--LVTAGNLVFSGSA 370 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~~v~~--~~~~~~~l~sgs~ 370 (474)
.. ......+..|...|.+++|+|++++|++++.|+.|++||.+.... ....+.+|...|.+ +++++++|++|+.
T Consensus 138 ~~---~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 138 DE---YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp SC---EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CC---eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC
Confidence 32 223456678899999999999999999999999999999876542 23456778877755 5567999999999
Q ss_pred CCcEEEEECCCC-------------ceEEEEeecC-CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 371 DMSICIWRRKEN-------------EHICLSMLTG-HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 371 dg~i~iwd~~~~-------------~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
|++|+|||.... ...++..+.+ |...|.+++|+|++. .|++++.|+.|++|++.....
T Consensus 215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~--------~l~s~~~d~~i~vw~~~~~~~ 286 (345)
T 3fm0_A 215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG--------ALATACGDDAIRVFQEDPNSD 286 (345)
T ss_dssp TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC--------CEEEEETTSCEEEEEECTTSC
T ss_pred CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC--------EEEEEeCCCeEEEEEeCCCCC
Confidence 999999996321 1123445554 889999999999998 899999999999999976543
Q ss_pred CCCCC--cccccccCCCCCCCccccCCCCCcCC-ceeecc
Q 047728 437 PLVST--TQQHPLEGHGVAPNSLPYAPSFSSQG-RICQKR 473 (474)
Q Consensus 437 ~~~~~--~~~~~~~~~~~~v~~l~~~p~~s~Dg-~~l~~~ 473 (474)
+.... ...+...+|...|++++| +||+ .+++++
T Consensus 287 ~~~~~~~~~~~~~~~h~~~V~~v~~----~p~~~~~laS~ 322 (345)
T 3fm0_A 287 PQQPTFSLTAHLHQAHSQDVNCVAW----NPKEPGLLASC 322 (345)
T ss_dssp TTSCCEEEEEEETTSSSSCEEEEEE----CSSSTTEEEEE
T ss_pred cceeeEEEEeeecccccCcEeEeEE----eCCCceEEEEc
Confidence 32111 122345689999999954 5555 366654
No 31
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.8e-38 Score=307.40 Aligned_cols=301 Identities=20% Similarity=0.267 Sum_probs=252.1
Q ss_pred eeeeeeeeecCc-EEEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecC
Q 047728 101 VLIGSLVREEGH-IYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVS 176 (474)
Q Consensus 101 ~~~~~l~~h~~~-i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~ 176 (474)
.....+.+|.+. +.++.+++++|++|+.||+|++||.. +.+..+.+|.+.|.+++|+ ++.|++|+.||+|++||++
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETT
T ss_pred cceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECC
Confidence 345678899887 68899999999999999999999954 5677788999999999998 4599999999999999998
Q ss_pred CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEec--CCCCEEEEEECCCcEEEEEcCCcce
Q 047728 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMS--EDQNLLYSASWDKTFKVWRTSDYKC 254 (474)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~s~dg~i~iwd~~~~~~ 254 (474)
+++... .+.+|...|.+++|+ +++.+|++|+.|++|++||+.++..
T Consensus 192 ~~~~~~--------------------------------~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 239 (464)
T 3v7d_B 192 KGCCTH--------------------------------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239 (464)
T ss_dssp TTEEEE--------------------------------EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred CCcEEE--------------------------------EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence 875432 234599999999998 5778999999999999999987653
Q ss_pred -----------------------eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc
Q 047728 255 -----------------------LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC 310 (474)
Q Consensus 255 -----------------------~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 310 (474)
+..+.+|...|.++. +++ .+++++.||.|++||++... ....+..|..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~d~~i~vwd~~~~~------~~~~~~~~~~ 311 (464)
T 3v7d_B 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMK------CLYILSGHTD 311 (464)
T ss_dssp C------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EETTEEEEEETTSCEEEEETTTTE------EEEEECCCSS
T ss_pred cccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCCCEEEEEeCCCeEEEEECCCCc------EEEEecCCCC
Confidence 445677888888874 445 99999999999999997543 3556678999
Q ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee
Q 047728 311 AVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML 390 (474)
Q Consensus 311 ~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 390 (474)
.|.+++|+|++++|++++.|+.|++||++++... ..+.+|...+.++.+++++|++|+.||.|++||+.+.... ...
T Consensus 312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~--~~~ 388 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASMDTTIRIWDLENGELM-YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK--FSY 388 (464)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE--EEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-EEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCcee--eee
Confidence 9999999999999999999999999999887654 5667899999999999999999999999999999987633 222
Q ss_pred cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccC
Q 047728 391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYA 460 (474)
Q Consensus 391 ~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 460 (474)
.|...+..++|++++. +|++|+ ||.|++||+.+++.. ...+..|...|.+++|+
T Consensus 389 -~~~~~~~~~~~~~~~~--------~l~~~~-dg~i~iwd~~~g~~~------~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 389 -HHTNLSAITTFYVSDN--------ILVSGS-ENQFNIYNLRSGKLV------HANILKDADQIWSVNFK 442 (464)
T ss_dssp -ECTTCCCEEEEEECSS--------EEEEEE-TTEEEEEETTTCCEE------ESCTTTTCSEEEEEEEE
T ss_pred -cCCCCccEEEEEeCCC--------EEEEec-CCeEEEEECCCCcEE------ehhhccCCCcEEEEEec
Confidence 3667888999999998 899988 899999999987422 11255678888888664
No 32
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.8e-38 Score=324.35 Aligned_cols=283 Identities=24% Similarity=0.390 Sum_probs=232.7
Q ss_pred eeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCc-------cccccccCccCEEEEEec--CCEEEEEeCCC
Q 047728 101 VLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQR-------EFSGFKSNSGLVKAIVIS--NEKIFSGHQDG 168 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~-------~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg 168 (474)
.+.+.+.+|++.|++++++ +++|+||+.||+|++|+... ....+.+|...|.+++|+ +++|++|+.||
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4556799999999999986 46999999999999998643 235678999999999998 67999999999
Q ss_pred eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEE
Q 047728 169 KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWR 248 (474)
Q Consensus 169 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd 248 (474)
+|+|||+.++.... .+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 453 ~v~vwd~~~~~~~~--------------------------------~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 453 ELRLWDLAAGVSTR--------------------------------RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500 (694)
T ss_dssp EEEEEETTTTEEEE--------------------------------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cEEEEECCCCccee--------------------------------EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 99999998765431 3456999999999999999999999999999999
Q ss_pred cCCcceeeee---eecCcceeEEEecCCC---eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC
Q 047728 249 TSDYKCLESV---IAHDDAVNSIVAGFDG---LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA 322 (474)
Q Consensus 249 ~~~~~~~~~~---~~~~~~v~~v~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 322 (474)
+......... .+|...|.+++|+|++ .+++++.|+.|++||++... ....+..|...|++++|+|+++
T Consensus 501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~------~~~~~~~h~~~v~~v~~spdg~ 574 (694)
T 3dm0_A 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK------LRSTLAGHTGYVSTVAVSPDGS 574 (694)
T ss_dssp TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECTTSS
T ss_pred CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc------EEEEEcCCCCCEEEEEEeCCCC
Confidence 8654333222 4688899999999986 79999999999999998543 3566778999999999999999
Q ss_pred EEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC---------
Q 047728 323 IVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH--------- 393 (474)
Q Consensus 323 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h--------- 393 (474)
+|++++.|+.|++||++++..+...........+++++++.+|++++ |+.|+|||+++++.. ..+..+
T Consensus 575 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~ 651 (694)
T 3dm0_A 575 LCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIV--EDLKVDLKAEAEKAD 651 (694)
T ss_dssp EEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEE--EEECCCCC-------
T ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCCh--hhhcccccccccccc
Confidence 99999999999999999887654443333445577778888887766 566999999988733 333221
Q ss_pred ----------ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 394 ----------SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 394 ----------~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
...+++++|+|+++ +|++|+.||+|+||++.
T Consensus 652 ~~~~~~~~~~~~~~~~l~~spdg~--------~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 652 NSGPAATKRKVIYCTSLNWSADGS--------TLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ---------CCCCEEEEEECTTSS--------EEEEEETTSEEEEEEC-
T ss_pred ccccccCCceeEEeeeEEEcCCCC--------EEEEEcCCCeEEEEecc
Confidence 12478999999999 99999999999999985
No 33
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.4e-38 Score=293.95 Aligned_cols=274 Identities=24% Similarity=0.380 Sum_probs=230.4
Q ss_pred ccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728 141 FSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218 (474)
Q Consensus 141 ~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
...+.+|...|.+++|+ +++|++++.||.|++|++.+++... .+.+
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~--------------------------------~~~~ 63 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--------------------------------TISG 63 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--------------------------------EECC
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch--------------------------------hhcc
Confidence 45678899999999998 6799999999999999998765432 2345
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCce
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 297 (474)
|...|.+++|+|++++|++++.|+.|++||+++++++..+..|...|.++.|+|++ .+++++.|+.|++||++...
T Consensus 64 h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--- 140 (312)
T 4ery_A 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK--- 140 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC---
T ss_pred CCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE---
Confidence 99999999999999999999999999999999999999999999999999999998 99999999999999998654
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEE
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSIC 375 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~ 375 (474)
....+..|...|.+++|+|++++|++++.|+.|++||++++.........+...+ +++++++++|++++.|+.|+
T Consensus 141 ---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 217 (312)
T 4ery_A 141 ---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217 (312)
T ss_dssp ---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred ---EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence 3456677889999999999999999999999999999998766655544444444 66778899999999999999
Q ss_pred EEECCCCceEEEEeecCCccceEE--EEEe-eCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCC
Q 047728 376 IWRRKENEHICLSMLTGHSGPVKC--LAVE-KDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGV 452 (474)
Q Consensus 376 iwd~~~~~~~~~~~~~~h~~~v~~--l~~~-~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 452 (474)
+||+.+++ ++..+.+|...+.+ ..++ +++. +|++|+.||.|++||+.++ .....+.+|..
T Consensus 218 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~sg~~dg~i~vwd~~~~-------~~~~~~~~h~~ 280 (312)
T 4ery_A 218 LWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGK--------WIVSGSEDNLVYIWNLQTK-------EIVQKLQGHTD 280 (312)
T ss_dssp EEETTTTE--EEEEECSSCCSSSCCCEEEECSSSC--------EEEECCTTSCEEEEETTTC-------CEEEEECCCSS
T ss_pred EEECCCCc--EEEEEEecCCceEEEEEEEEeCCCc--------EEEEECCCCEEEEEECCCc-------hhhhhhhccCC
Confidence 99999887 46677777765433 3344 4555 8999999999999999876 45667889999
Q ss_pred CCCccccCCCCCcCCceeecc
Q 047728 453 APNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 453 ~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
.|.++ +|+|++++++++
T Consensus 281 ~v~~~----~~~p~~~~l~s~ 297 (312)
T 4ery_A 281 VVIST----ACHPTENIIASA 297 (312)
T ss_dssp CEEEE----EECSSSSEEEEE
T ss_pred cEEEE----eecCcCCceEEE
Confidence 99988 455667766653
No 34
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.1e-39 Score=306.98 Aligned_cols=293 Identities=18% Similarity=0.228 Sum_probs=233.6
Q ss_pred EEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEE
Q 047728 132 IRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIE 207 (474)
Q Consensus 132 v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (474)
+..|+.. .....+.+|.+.|.+++|+ +++|++|+.||+|++||+.+++...
T Consensus 48 ~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~------------------------- 102 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH------------------------- 102 (380)
T ss_dssp CCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE-------------------------
T ss_pred ccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce-------------------------
Confidence 3445533 3456788999999999998 6799999999999999998775432
Q ss_pred EeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc-------eeeeeeecCcceeEEEecCCC--eEEE
Q 047728 208 VRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK-------CLESVIAHDDAVNSIVAGFDG--LVFT 278 (474)
Q Consensus 208 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~v~~~~~~--~l~~ 278 (474)
.+..|...|.+++|+|++++|++|+.|+.|++||+.+.. ....+.+|.+.|.++.|.|++ .|++
T Consensus 103 -------~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s 175 (380)
T 3iz6_a 103 -------AIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175 (380)
T ss_dssp -------EEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE
T ss_pred -------EEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEE
Confidence 234589999999999999999999999999999987532 345678899999999999975 7999
Q ss_pred eeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceee--
Q 047728 279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI-- 355 (474)
Q Consensus 279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v-- 355 (474)
|+.|++|++||++.+.... ........+|...|.+++|++ ++++|++|+.|+.|++||++........+.+|...|
T Consensus 176 ~s~D~~i~~wd~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~ 254 (380)
T 3iz6_a 176 GSGDQTCVLWDVTTGQRIS-IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS 254 (380)
T ss_dssp ECTTSCEEEECTTTCCEEE-EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCE
T ss_pred ECCCCcEEEEEcCCCcEEE-EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEE
Confidence 9999999999998654311 011112257888999999987 889999999999999999986655556777888777
Q ss_pred EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC-------ccceEEEEEeeCCccccccceEEEEEecCCCcEEE
Q 047728 356 LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH-------SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM 428 (474)
Q Consensus 356 ~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v 428 (474)
++++|++++|++|+.|++|++||+++++. +..+..+ ...|++++|+|++. +|++|+.||.|++
T Consensus 255 v~~~p~~~~l~s~s~D~~i~lwd~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~--------~l~~g~~dg~i~v 324 (380)
T 3iz6_a 255 VKFFPDGQRFGTGSDDGTCRLFDMRTGHQ--LQVYNREPDRNDNELPIVTSVAFSISGR--------LLFAGYSNGDCYV 324 (380)
T ss_dssp EEECTTSSEEEEECSSSCEEEEETTTTEE--EEEECCCCSSSCCSSCSCSEEEECSSSS--------EEEEECTTSCEEE
T ss_pred EEEecCCCeEEEEcCCCeEEEEECCCCcE--EEEecccccccccccCceEEEEECCCCC--------EEEEEECCCCEEE
Confidence 45566899999999999999999998874 3444333 23589999999999 9999999999999
Q ss_pred EEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 429 WRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 429 w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
||+..++... .......+|...|+++ +|+|||++|+++|
T Consensus 325 wd~~~~~~~~---~~~~~~~~h~~~v~~l----~~s~dg~~l~sgs 363 (380)
T 3iz6_a 325 WDTLLAEMVL---NLGTLQNSHEGRISCL----GLSSDGSALCTGS 363 (380)
T ss_dssp EETTTCCEEE---EECCSCSSCCCCCCEE----EECSSSSEEEEEC
T ss_pred EECCCCceEE---EEecccCCCCCceEEE----EECCCCCEEEEee
Confidence 9998763221 1112236799999999 7788999998875
No 35
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8e-38 Score=301.41 Aligned_cols=291 Identities=15% Similarity=0.198 Sum_probs=240.0
Q ss_pred ceeeeeeeeecCcEEEEEEcCCEEEEeeCCCcEEEEeCC--c------cccccccCccCEEEEEec------C---CEEE
Q 047728 100 NVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQ--R------EFSGFKSNSGLVKAIVIS------N---EKIF 162 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~--~------~~~~~~~h~~~V~~i~~~------~---~~l~ 162 (474)
......+.+|++.|+++++++++|++|+.||.|++||.. + ....+..|...|.+++|+ + ++|+
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 345677889999999999999999999999999999954 2 466778999999999997 3 6899
Q ss_pred EEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec-----cCCeeEEEec----CCCC
Q 047728 163 SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH-----FDAISSLSMS----EDQN 233 (474)
Q Consensus 163 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~~----~~~~ 233 (474)
+++.||.|++|++.+++....... ..+..| ...|.+++|+ |+++
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 138 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIF---------------------------EKLDLLDSDMKKHSFWALKWGASNDRLLS 138 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEE---------------------------EEECCSCTTGGGSCEEEEEEECCC----C
T ss_pred EEcCCCCEEEEEccCCcccccccc---------------------------eeecccccccCCCcEEEEEEeeccCCCCc
Confidence 999999999999988764211101 122335 5899999999 9999
Q ss_pred E-EEEEECCCcEEEEEcCC------cceee-----eeee-------cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCC
Q 047728 234 L-LYSASWDKTFKVWRTSD------YKCLE-----SVIA-------HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQG 294 (474)
Q Consensus 234 ~-l~s~s~dg~i~iwd~~~------~~~~~-----~~~~-------~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~ 294 (474)
+ |++++.|+.|++||+.+ ++.+. .+.+ |...|.+++|+|++.+++++.||.|++||++...
T Consensus 139 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 218 (397)
T 1sq9_A 139 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLR 218 (397)
T ss_dssp EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTE
T ss_pred eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCc
Confidence 9 99999999999999998 77776 7744 8899999999999888899999999999998543
Q ss_pred Cceeeeeeeeeec---c---cccEEEEEEcCCCCEEEEEcCC---CcEEEeecCcccccceeeee-------------cc
Q 047728 295 KGTKHFFSQTLLK---Q---ECAVTALAISPDAAIVYCGSSD---GLVNFWERELNLSHGGVLRG-------------HK 352 (474)
Q Consensus 295 ~~~~~~~~~~~~~---~---~~~v~~l~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~-------------~~ 352 (474)
....+.. | ...|.+++|+|++++|++++.| +.|++||+++..... .+.. |.
T Consensus 219 ------~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 291 (397)
T 1sq9_A 219 ------PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG-SLSVPTHSSQASLGEFAHS 291 (397)
T ss_dssp ------EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEE-EECBC--------CCBSBS
T ss_pred ------eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccc-eeccCcccccccccccccC
Confidence 2444555 7 8899999999999999999999 999999998876553 4444 77
Q ss_pred eeeEE--EEecCCEEEEEeCCCcEEEEECCCCceEEEEeec------CC---------------ccceEEEEEeeCC---
Q 047728 353 LAILC--LVTAGNLVFSGSADMSICIWRRKENEHICLSMLT------GH---------------SGPVKCLAVEKDD--- 406 (474)
Q Consensus 353 ~~v~~--~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~------~h---------------~~~v~~l~~~~~~--- 406 (474)
..+.+ +++++++|++++.||.|++||+.+++ ++..+. +| ..+|++++|+|++
T Consensus 292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~ 369 (397)
T 1sq9_A 292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE--RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS 369 (397)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc--eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence 66655 45679999999999999999999887 456676 77 9999999999998
Q ss_pred -------ccccccceEEEEEecCCCcEEEEEccCC
Q 047728 407 -------ESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 407 -------~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
. +|++++.||.|++|++.++
T Consensus 370 ~~~~~~~~--------~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 370 GMGADLNE--------SLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp STTCTTSC--------EEEEEETTTEEEEEEEEC-
T ss_pred cccccccc--------eEEEecCCCcEEEEEcCCC
Confidence 5 8999999999999999875
No 36
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.7e-37 Score=287.78 Aligned_cols=281 Identities=18% Similarity=0.289 Sum_probs=235.0
Q ss_pred eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc-----cccccc--cCccCEEEEEec--CCEEEEEeCCCe
Q 047728 101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR-----EFSGFK--SNSGLVKAIVIS--NEKIFSGHQDGK 169 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~-----~~~~~~--~h~~~V~~i~~~--~~~l~s~~~dg~ 169 (474)
.......+|.+.|.+++++ +++|++++ ||.|++||... .+..+. .|...|.+++|+ +++|++++.||.
T Consensus 42 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 120 (337)
T 1gxr_A 42 ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp EEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred cccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence 3444455899999999886 78999999 99999999653 222222 789999999998 668999999999
Q ss_pred EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728 170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRT 249 (474)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~ 249 (474)
|++||+.+++..... .+..|...|.+++|+|++++|++++.|+.|++||+
T Consensus 121 i~~~d~~~~~~~~~~------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~ 170 (337)
T 1gxr_A 121 LSIWDLAAPTPRIKA------------------------------ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL 170 (337)
T ss_dssp EEEEECCCC--EEEE------------------------------EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEECCCCCcceee------------------------------ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence 999999887532211 23448889999999999999999999999999999
Q ss_pred CCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728 250 SDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS 328 (474)
Q Consensus 250 ~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 328 (474)
++++.+..+..|...|.+++|+|++ .+++++.||.|++||++.... .....+...+.+++|+|++++|++++
T Consensus 171 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~ 243 (337)
T 1gxr_A 171 HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-------LQQHDFTSQIFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-------EEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce-------EeeecCCCceEEEEECCCCCEEEEEc
Confidence 9999999999999999999999999 999999999999999985432 22235678899999999999999999
Q ss_pred CCCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728 329 SDGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD 406 (474)
Q Consensus 329 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 406 (474)
.++.|++||++..... ....|...+. ++++++++|++++.||.|++||+.+++.. ....|...|.+++|+|++
T Consensus 244 ~~~~i~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~---~~~~~~~~v~~~~~s~~~ 318 (337)
T 1gxr_A 244 ESSNVEVLHVNKPDKY--QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI---FQSKESSSVLSCDISVDD 318 (337)
T ss_dssp TTSCEEEEETTSSCEE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---EEEECSSCEEEEEECTTS
T ss_pred CCCcEEEEECCCCCeE--EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE---EEecCCCcEEEEEECCCC
Confidence 9999999999887543 4456666664 45567999999999999999999988743 334588899999999999
Q ss_pred ccccccceEEEEEecCCCcEEEEEcc
Q 047728 407 ESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 407 ~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
+ +|++++.||.|++|++.
T Consensus 319 ~--------~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 319 K--------YIVTGSGDKKATVYEVI 336 (337)
T ss_dssp C--------EEEEEETTSCEEEEEEE
T ss_pred C--------EEEEecCCCeEEEEEEe
Confidence 9 99999999999999974
No 37
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-38 Score=294.21 Aligned_cols=290 Identities=20% Similarity=0.271 Sum_probs=218.5
Q ss_pred cccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728 140 EFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH 219 (474)
Q Consensus 140 ~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 219 (474)
.+..+.+|.+.|.+++|++++|++|+.|++|++|++..+......... ..+|
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~----------------------------~~~h 57 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLD----------------------------ETAH 57 (330)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEEC----------------------------TTCC
T ss_pred cceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEe----------------------------cCCc
Confidence 456678999999999999889999999999999999865322111100 0128
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEEEcCC-------cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcc
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSD-------YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRE 291 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~ 291 (474)
...|.+++|+|++++|++|+.|++|++||+.. .+++..+.+|...|.+++|+|++ +|++|+.|+.|++||++
T Consensus 58 ~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137 (330)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECC
T ss_pred cCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEecc
Confidence 99999999999999999999999999999853 35677788999999999999999 99999999999999995
Q ss_pred cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc-ccceeeeecceeeEEEEe--c--CCEEE
Q 047728 292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL-SHGGVLRGHKLAILCLVT--A--GNLVF 366 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~~v~~~~~--~--~~~l~ 366 (474)
.... .......+..|...|.+++|+|++.+|++++.|+.|++||..... .....+.+|...|.++.+ + +.+|+
T Consensus 138 ~~~~--~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 138 ESGE--EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp TTCC--CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred CCCC--CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence 3321 112345677899999999999999999999999999999987542 334567788888866654 4 56899
Q ss_pred EEeCCCcEEEEECCCCc------eEEEEeecC-CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCC
Q 047728 367 SGSADMSICIWRRKENE------HICLSMLTG-HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLV 439 (474)
Q Consensus 367 sgs~dg~i~iwd~~~~~------~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~ 439 (474)
+|+.|++|++||+.... ..+...+.. |...|.+++|++++ +|++++.||.|+||++.++...
T Consensus 216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~---------~l~s~~~dg~v~iw~~~~~~~~-- 284 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG---------LIASVGADGVLAVYEEVDGEWK-- 284 (330)
T ss_dssp EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS---------CEEEEETTSCEEEEEEETTEEE--
T ss_pred EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC---------EEEEEeCCCEEEEEEcCCCceE--
Confidence 99999999999986531 123445554 99999999999654 5999999999999998765210
Q ss_pred CCcccccccCCCC-CCCccccCCCCCcCCceeeccC
Q 047728 440 STTQQHPLEGHGV-APNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 440 ~~~~~~~~~~~~~-~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
.......+|.. .|++++|+|. .|+++|+++|
T Consensus 285 --~~~~~~~~h~~~~v~~v~~~~~--~~~~~las~s 316 (330)
T 2hes_X 285 --VFAKRALCHGVYEINVVKWLEL--NGKTILATGG 316 (330)
T ss_dssp --EEEEESCTTTTSCEEEEEEC-------CCEEEEE
T ss_pred --EEeccccccccceEEEEEEecC--CCceEEEEec
Confidence 11223356776 7888855432 1677777653
No 38
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-38 Score=301.29 Aligned_cols=295 Identities=15% Similarity=0.173 Sum_probs=210.5
Q ss_pred CEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEEEeC------CCeEEEEecCCCCcceeeeecccCcc
Q 047728 121 DLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQ------DGKIRVWKVSSKDASIHKRVGTLPTF 192 (474)
Q Consensus 121 ~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~ 192 (474)
++++.++.+.....|+... .....|...|.+++|+ |.+|++|+. |+.|++|+..++.......
T Consensus 17 ~~~~~~~g~~~~~~w~~p~--~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~------- 87 (357)
T 4g56_B 17 NLYFQSNGSSKGSAWGRPV--TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLC------- 87 (357)
T ss_dssp -------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGC-------
T ss_pred ceEEecCCCccccccCCCC--CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEe-------
Confidence 3445555567788998542 2345799999999998 779999997 7789999887764321111
Q ss_pred ceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee----eeecCcceeEE
Q 047728 193 KDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES----VIAHDDAVNSI 268 (474)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~v~~v 268 (474)
....+|...|.+++|+|++. +++++.||+|++||+.+++.... ..+|...|.++
T Consensus 88 ---------------------~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v 145 (357)
T 4g56_B 88 ---------------------TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL 145 (357)
T ss_dssp ---------------------SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEE
T ss_pred ---------------------cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEE
Confidence 12345899999999999875 56788999999999988775432 34789999999
Q ss_pred EecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCcccccce
Q 047728 269 VAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHGG 346 (474)
Q Consensus 269 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~ 346 (474)
+|+|++ +|++|+.|+.|++||++.+. ....+..|...|++++|++++. ++++++.|+.|++||++++.....
T Consensus 146 ~~spdg~~l~sgs~dg~v~iwd~~~~~------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~ 219 (357)
T 4g56_B 146 SVFSDGTQAVSGGKDFSVKVWDLSQKA------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR 219 (357)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB
T ss_pred EECCCCCEEEEEeCCCeEEEEECCCCc------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee
Confidence 999999 89999999999999998543 3566778999999999999874 788999999999999988765543
Q ss_pred ee-eecceeeEEE--Eec-CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC
Q 047728 347 VL-RGHKLAILCL--VTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL 422 (474)
Q Consensus 347 ~~-~~~~~~v~~~--~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~ 422 (474)
.. ..+...+.++ +|+ +.+|++|+.|+.|++||+++++ ++..+.+|...|++++|+|++.. +|++|+.
T Consensus 220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~l~~sp~~~~-------~lasgs~ 290 (357)
T 4g56_B 220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD--SAQTSAVHSQNITGLAYSYHSSP-------FLASISE 290 (357)
T ss_dssp CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG--GCEEECCCSSCEEEEEECSSSSC-------CEEEEET
T ss_pred eeeccccccccchhhhhcccceEEEeecccceeEEECCCCc--EeEEEeccceeEEEEEEcCCCCC-------EEEEEeC
Confidence 32 3444555554 455 6789999999999999999887 45678899999999999998753 7999999
Q ss_pred CCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCc-CCceeecc
Q 047728 423 DKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSS-QGRICQKR 473 (474)
Q Consensus 423 Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~-Dg~~l~~~ 473 (474)
|++|+|||+.+++ ... ..+|...|++++| +| |+++|+++
T Consensus 291 D~~i~iwd~~~~~-------~~~-~~~H~~~V~~vaf----sP~d~~~l~s~ 330 (357)
T 4g56_B 291 DCTVAVLDADFSE-------VFR-DLSHRDFVTGVAW----SPLDHSKFTTV 330 (357)
T ss_dssp TSCEEEECTTSCE-------EEE-ECCCSSCEEEEEE----CSSSTTEEEEE
T ss_pred CCEEEEEECCCCc-------EeE-ECCCCCCEEEEEE----eCCCCCEEEEE
Confidence 9999999998762 222 3479999999954 54 67777765
No 39
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.1e-38 Score=292.23 Aligned_cols=283 Identities=20% Similarity=0.308 Sum_probs=225.2
Q ss_pred ccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 141 FSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 141 ~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
...+.+|.+.|.+++|+ +++|++|+.|++|++|++......... ....+.
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~---------------------------~~~~~~ 62 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV---------------------------PVRSFK 62 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE---------------------------EEEEEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc---------------------------cceEEe
Confidence 34678999999999997 368999999999999998754322111 112456
Q ss_pred eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .+++|+.|++|++||++..
T Consensus 63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--- 139 (319)
T 3frx_A 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--- 139 (319)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC---
T ss_pred CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Confidence 799999999999999999999999999999999999999999999999999999998 9999999999999998632
Q ss_pred eeeeeeeeeecccccEEEEEEcCC------CCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--EEecCCEEEEE
Q 047728 297 TKHFFSQTLLKQECAVTALAISPD------AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAGNLVFSG 368 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg 368 (474)
....+.+|...|.+++|.|. +..|++++.|+.|++||++..... ..+.+|...+.+ ++|++++|++|
T Consensus 140 ----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 140 ----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp ----EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEE-EEECCCCSCEEEEEECTTSSEEEEE
T ss_pred ----eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhh-eeecCCCCcEEEEEEcCCCCEEEEE
Confidence 35567789999999999995 448999999999999999876543 455678777754 56689999999
Q ss_pred eCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCc-ccccc
Q 047728 369 SADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTT-QQHPL 447 (474)
Q Consensus 369 s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~-~~~~~ 447 (474)
+.||.|++||+.+++ ++..+.. ...|.+++|+|++. +|++++.+ .|++|++........... .....
T Consensus 215 ~~dg~i~iwd~~~~~--~~~~~~~-~~~v~~~~~sp~~~--------~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~ 282 (319)
T 3frx_A 215 GKDGEIMLWNLAAKK--AMYTLSA-QDEVFSLAFSPNRY--------WLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYS 282 (319)
T ss_dssp ETTCEEEEEETTTTE--EEEEEEC-CSCEEEEEECSSSS--------EEEEEETT-EEEEEEETTEEEEEEECCCCTTCC
T ss_pred eCCCeEEEEECCCCc--EEEEecC-CCcEEEEEEcCCCC--------EEEEEcCC-CcEEEEeCcCeeeeccCccccccc
Confidence 999999999999887 3455554 46899999999998 78887755 599999876422111000 11111
Q ss_pred cCCCCCCCccccCCCCCcCCceeeccC
Q 047728 448 EGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 448 ~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
..|...+.++ +|||||++|+++|
T Consensus 283 ~~~~~~v~~~----~~spdg~~l~sg~ 305 (319)
T 3frx_A 283 KAAEPHAVSL----AWSADGQTLFAGY 305 (319)
T ss_dssp GGGCCCEEEE----EECTTSSEEEEEE
T ss_pred cCcCcceeEE----EECCCCCEEEEee
Confidence 2344455666 7899999998764
No 40
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.9e-37 Score=294.05 Aligned_cols=288 Identities=14% Similarity=0.118 Sum_probs=231.4
Q ss_pred CcceeeeeeeeecCcEEEEEEc--C-CEEEEeeCCCcEEEEeCC--cccccc--ccCccCEEEEEecC---CEEEEEeCC
Q 047728 98 SPNVLIGSLVREEGHIYSLAAA--G-DLLYTGSDSKNIRVWKNQ--REFSGF--KSNSGLVKAIVISN---EKIFSGHQD 167 (474)
Q Consensus 98 ~~~~~~~~l~~h~~~i~~~~~~--~-~~l~tgs~dg~v~vwd~~--~~~~~~--~~h~~~V~~i~~~~---~~l~s~~~d 167 (474)
.+..+...+.+|.+.|++++++ + ++|++|+.||.|+|||.. +....+ .+|...|.+++|++ ++|++++.|
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 3456778899999999999987 5 799999999999999965 333333 36999999999974 689999999
Q ss_pred CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEE
Q 047728 168 GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW 247 (474)
Q Consensus 168 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iw 247 (474)
+.|++||+....... .. ...+|...|.+++|+|++++|++++.|+.|++|
T Consensus 141 ~~i~iwd~~~~~~~~-~~-----------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 190 (383)
T 3ei3_B 141 GATTLRDFSGSVIQV-FA-----------------------------KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLL 190 (383)
T ss_dssp TEEEEEETTSCEEEE-EE-----------------------------CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred CEEEEEECCCCceEE-Ee-----------------------------ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEE
Confidence 999999998532211 10 011256889999999999999999999999999
Q ss_pred EcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEE
Q 047728 248 RTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIV 324 (474)
Q Consensus 248 d~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l 324 (474)
|+ +++.+..+..|...|.+++|+|++ .+++++.|+.|++||++....... ... ...|...|.+++|+| ++.+|
T Consensus 191 d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~-~~~~~~~v~~~~~s~~~~~~l 266 (383)
T 3ei3_B 191 GL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNS--YIA-EMPHEKPVNAAYFNPTDSTKL 266 (383)
T ss_dssp ET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTC--EEE-EEECSSCEEEEEECTTTSCEE
T ss_pred EC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccc--eEE-EecCCCceEEEEEcCCCCCEE
Confidence 99 578889999999999999999998 799999999999999987432111 122 226889999999999 99999
Q ss_pred EEEcCCCcEEEeecCcccccceeeeecc-------e------------eeEEEEecCCEEEEEeCCCcEEEEECCCCceE
Q 047728 325 YCGSSDGLVNFWERELNLSHGGVLRGHK-------L------------AILCLVTAGNLVFSGSADMSICIWRRKENEHI 385 (474)
Q Consensus 325 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~-------~------------~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~ 385 (474)
++++.|+.|++||+++....... .+|. . ..+++++++++ +|+.|+.|++||+.+++.
T Consensus 267 ~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~- 342 (383)
T 3ei3_B 267 LTTDQRNEIRVYSSYDWSKPDQI-IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL- 342 (383)
T ss_dssp EEEESSSEEEEEETTBTTSCSEE-EECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE-
T ss_pred EEEcCCCcEEEEECCCCcccccc-ccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCce-
Confidence 99999999999999887655333 2221 1 11444556666 778999999999998884
Q ss_pred EEEeecC--CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 386 CLSMLTG--HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 386 ~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
+..+.+ |...+.+++|+|++. +|++|+ |+.|+||++++
T Consensus 343 -~~~l~~~~~~~~~~~~~~s~~g~--------~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 343 -VHQLRDPNAAGIISLNKFSPTGD--------VLASGM-GFNILIWNRED 382 (383)
T ss_dssp -EEEECBTTBCSCCCEEEECTTSS--------EEEEEE-TTEEEEEECC-
T ss_pred -eeeecCCCCCceEEEEEEecCcc--------EEEEec-CCcEEEEecCC
Confidence 556655 567888889999999 899997 99999999875
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-37 Score=293.67 Aligned_cols=289 Identities=18% Similarity=0.280 Sum_probs=221.4
Q ss_pred cccccccCccCEEEEEe--------cCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeee
Q 047728 140 EFSGFKSNSGLVKAIVI--------SNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRH 211 (474)
Q Consensus 140 ~~~~~~~h~~~V~~i~~--------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (474)
....+.+|.+.|++++| ++.+|++|+.|++|++||+...+...... .
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~-------------------------~ 67 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFG-------------------------I 67 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSE-------------------------E
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccc-------------------------c
Confidence 34568899999999999 35699999999999999997654211000 0
Q ss_pred ccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEc
Q 047728 212 RNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRR 290 (474)
Q Consensus 212 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~ 290 (474)
....+.+|...|.+++|+|++.+|++|+.|++|++||+++++.+..+.+|...|.+++|+|++ .|++++.|+.|++||+
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence 112456799999999999999999999999999999999999999999999999999999999 9999999999999998
Q ss_pred ccCCCceeeeeeeeeecccccEEEEEEcCCC----------CEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--E
Q 047728 291 ELQGKGTKHFFSQTLLKQECAVTALAISPDA----------AIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--L 358 (474)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~ 358 (474)
.... .........|...|.+++|+|++ .+|++++.|+.|++||... .....+.+|...+.+ +
T Consensus 148 ~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v~~~~~ 221 (343)
T 2xzm_R 148 LGEC----KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSI 221 (343)
T ss_dssp SSCE----EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCEEEEEE
T ss_pred cCCc----eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccceEEEE
Confidence 6211 11122233688899999999986 7999999999999999543 233456678777754 5
Q ss_pred EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCC
Q 047728 359 VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPL 438 (474)
Q Consensus 359 ~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~ 438 (474)
++++++|++|+.|+.|++||+...... ...+ .+...|.+++|+|++. +|++ +.|+.|++|++.+.....
T Consensus 222 s~~g~~l~sgs~dg~v~iwd~~~~~~~-~~~~-~~~~~v~~v~~sp~~~--------~la~-~~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 222 SPNGKYIATGGKDKKLLIWDILNLTYP-QREF-DAGSTINQIAFNPKLQ--------WVAV-GTDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp CTTSSEEEEEETTCEEEEEESSCCSSC-SEEE-ECSSCEEEEEECSSSC--------EEEE-EESSCEEEEESSSCCSCS
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCccc-ceee-cCCCcEEEEEECCCCC--------EEEE-ECCCCEEEEEeCCCCCCc
Confidence 568999999999999999999543321 2223 2456799999999987 6654 568889999998764332
Q ss_pred C--CC----cccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 439 V--ST----TQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 439 ~--~~----~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
. .. .......+|...+.++ +|+|||++|++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~v~~~----~~sp~g~~l~sg~ 328 (343)
T 2xzm_R 291 VCTIEAEPITKAEGQKGKNPQCTSL----AWNALGKKLFAGF 328 (343)
T ss_dssp EEECCCCSGGGBTTBCCSCCCEEEE----EECSSSCCEEEEE
T ss_pred eEEeecCcchhhhhhcCCCCceEEE----EECCCCCeEEEec
Confidence 1 00 0111233677778888 6777888887753
No 42
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.3e-38 Score=296.46 Aligned_cols=289 Identities=17% Similarity=0.168 Sum_probs=212.0
Q ss_pred EEEeCCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEee
Q 047728 133 RVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRR 210 (474)
Q Consensus 133 ~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (474)
+.|+.... ....|...|.+++|+ |.+|++++ |+++++||........ ....+. .
T Consensus 17 r~w~~~~~--~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~---~~~~~~------------------~ 72 (344)
T 4gqb_B 17 REWNLPPN--APACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKD---PCAAPN------------------E 72 (344)
T ss_dssp ------CC--SCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESS---GGGTTC------------------G
T ss_pred cccCCCCC--CcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecc---ccccCC------------------c
Confidence 56664322 123467789999998 55677666 7788988742110000 000000 0
Q ss_pred eccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee----eecCcceeEEEecCCC-eEEEeeCCCcE
Q 047728 211 HRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV----IAHDDAVNSIVAGFDG-LVFTGSADGTV 285 (474)
Q Consensus 211 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~~~~~v~~v~~~~~~-~l~~~~~dg~i 285 (474)
........|...|.+++|+|++ .|++|+.||+|+|||+.+++.+..+ .+|.+.|++++|+|++ +|++|+.|++|
T Consensus 73 ~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i 151 (344)
T 4gqb_B 73 GFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICI 151 (344)
T ss_dssp GGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeE
Confidence 0001223477889999999985 7889999999999999998765543 4799999999999999 99999999999
Q ss_pred EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEEEcCCCcEEEeecCcccccceee-eecceee--EEEEe-
Q 047728 286 KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYCGSSDGLVNFWERELNLSHGGVL-RGHKLAI--LCLVT- 360 (474)
Q Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~~v--~~~~~- 360 (474)
++||++.+. ....+.+|...|.+++|++++ .+|++++.|+.|++||++++.....+. ..+...+ +++++
T Consensus 152 ~iwd~~~~~------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~ 225 (344)
T 4gqb_B 152 KVWDLAQQV------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ 225 (344)
T ss_dssp EEEETTTTE------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS
T ss_pred EEEECCCCc------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCC
Confidence 999998643 456778899999999999987 578999999999999999876654432 2333334 45555
Q ss_pred cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCC
Q 047728 361 AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVS 440 (474)
Q Consensus 361 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~ 440 (474)
++++|++|+.||.|+|||+++++ ++..+.+|...|++++|+|++.. +|++|+.|++|+|||+.+++
T Consensus 226 ~~~~l~sg~~dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~fsp~g~~-------~lasgs~D~~i~vwd~~~~~----- 291 (344)
T 4gqb_B 226 QSEVFVFGDENGTVSLVDTKSTS--CVLSSAVHSQCVTGLVFSPHSVP-------FLASLSEDCSLAVLDSSLSE----- 291 (344)
T ss_dssp CTTEEEEEETTSEEEEEESCC----CCEEEECCSSCEEEEEECSSSSC-------CEEEEETTSCEEEECTTCCE-----
T ss_pred CCcceEEeccCCcEEEEECCCCc--EEEEEcCCCCCEEEEEEccCCCe-------EEEEEeCCCeEEEEECCCCc-----
Confidence 46789999999999999999887 56788999999999999999843 79999999999999998762
Q ss_pred CcccccccCCCCCCCccccCCCCCcCCc-eeecc
Q 047728 441 TTQQHPLEGHGVAPNSLPYAPSFSSQGR-ICQKR 473 (474)
Q Consensus 441 ~~~~~~~~~~~~~v~~l~~~p~~s~Dg~-~l~~~ 473 (474)
...+.+|...|+++ +|+|||+ +++++
T Consensus 292 ---~~~~~~H~~~V~~v----~~sp~~~~llas~ 318 (344)
T 4gqb_B 292 ---LFRSQAHRDFVRDA----TWSPLNHSLLTTV 318 (344)
T ss_dssp ---EEEECCCSSCEEEE----EECSSSTTEEEEE
T ss_pred ---EEEEcCCCCCEEEE----EEeCCCCeEEEEE
Confidence 23467899999999 5566665 44443
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.5e-37 Score=289.68 Aligned_cols=308 Identities=16% Similarity=0.176 Sum_probs=247.1
Q ss_pred ecCcEEEEEE--cCCEEEEeeCCCcEEEEeCCc--cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcce
Q 047728 109 EEGHIYSLAA--AGDLLYTGSDSKNIRVWKNQR--EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASI 182 (474)
Q Consensus 109 h~~~i~~~~~--~~~~l~tgs~dg~v~vwd~~~--~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~ 182 (474)
|.+.|.++++ +|++++++..++.+.+|.... .......|...|.+++|+ +++|++++ ||.|++|++.++....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 3455666555 589999998888877776443 233345799999999998 56888888 9999999998765332
Q ss_pred eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc--eeeeeee
Q 047728 183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK--CLESVIA 260 (474)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~ 260 (474)
..... ...+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+..
T Consensus 87 ~~~~~---------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 139 (337)
T 1gxr_A 87 PVSQL---------------------------DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139 (337)
T ss_dssp CSEEE---------------------------ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC
T ss_pred eeecc---------------------------cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeeccc
Confidence 11100 011488999999999999999999999999999999877 5667788
Q ss_pred cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728 261 HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339 (474)
Q Consensus 261 ~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~ 339 (474)
|...|.+++|+|++ .+++++.||.|++||++... ....+..|...|.+++|+|++++|++++.|+.|++||++
T Consensus 140 ~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT------LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc------eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECC
Confidence 99999999999998 89999999999999997543 345566788999999999999999999999999999999
Q ss_pred cccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEE
Q 047728 340 LNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS 419 (474)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s 419 (474)
+...............+++++++++|++++.|+.|++||+.+.+ ...+..|...|.+++|+|+++ +|++
T Consensus 214 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~--------~l~~ 282 (337)
T 1gxr_A 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGK--------WFVS 282 (337)
T ss_dssp TTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSS--------EEEE
T ss_pred CCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC---eEEEcCCccceeEEEECCCCC--------EEEE
Confidence 87665444333334446667789999999999999999999887 346788999999999999999 9999
Q ss_pred ecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728 420 GSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 420 ~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
++.||.|++|++.++... ....|...+.++ +|+|||++++++
T Consensus 283 ~~~dg~i~~~~~~~~~~~--------~~~~~~~~v~~~----~~s~~~~~l~~~ 324 (337)
T 1gxr_A 283 TGKDNLLNAWRTPYGASI--------FQSKESSSVLSC----DISVDDKYIVTG 324 (337)
T ss_dssp EETTSEEEEEETTTCCEE--------EEEECSSCEEEE----EECTTSCEEEEE
T ss_pred ecCCCcEEEEECCCCeEE--------EEecCCCcEEEE----EECCCCCEEEEe
Confidence 999999999999887422 223467778887 667788887764
No 44
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.9e-38 Score=304.94 Aligned_cols=290 Identities=15% Similarity=0.147 Sum_probs=223.5
Q ss_pred eeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCc----cccccccCccCEEEEEec---CCEEEEEeCCCeE
Q 047728 101 VLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQR----EFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKI 170 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~----~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i 170 (474)
.+.....+|...|+|++|+ +++||+|+.||+|+|||... ....+.+|.+.|++|+|+ +++|++|+.||+|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 4455677899999999996 56999999999999999542 234567899999999997 5699999999999
Q ss_pred EEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC
Q 047728 171 RVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS 250 (474)
Q Consensus 171 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 250 (474)
++||+++......... ..+...+.+++|+|++.+|++|+.||.|++||++
T Consensus 190 ~iwd~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~ 239 (435)
T 4e54_B 190 RLQDFKGNILRVFASS------------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD 239 (435)
T ss_dssp EEEETTSCEEEEEECC------------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS
T ss_pred EEeeccCCceeEEecc------------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC
Confidence 9999976533211100 1145568899999999999999999999999986
Q ss_pred CcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728 251 DYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS 328 (474)
Q Consensus 251 ~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 328 (474)
++.+..+.+|...|.+++|+|++ ++++++.|+.|++||++...... .......|...|++++|+|++++|++++
T Consensus 240 -~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~---~~~~~~~h~~~v~~~~~spdg~~l~s~~ 315 (435)
T 4e54_B 240 -GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA---SFLYSLPHRHPVNAACFSPDGARLLTTD 315 (435)
T ss_dssp -SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS---CCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred -cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc---eEEEeeeccccccceeECCCCCeeEEEc
Confidence 46677888999999999999987 78899999999999998654321 1233457889999999999999999999
Q ss_pred CCCcEEEeecCcccccceeeeecce--------eeEEEEecCCEEEEEe------------CCCcEEEEECCCCceEEEE
Q 047728 329 SDGLVNFWERELNLSHGGVLRGHKL--------AILCLVTAGNLVFSGS------------ADMSICIWRRKENEHICLS 388 (474)
Q Consensus 329 ~dg~i~v~d~~~~~~~~~~~~~~~~--------~v~~~~~~~~~l~sgs------------~dg~i~iwd~~~~~~~~~~ 388 (474)
.|+.|++||+++....... ..|.. ...++.+++.+++++. .++.|++||..+++.. ..
T Consensus 316 ~D~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~-~~ 393 (435)
T 4e54_B 316 QKSEIRVYSASQWDCPLGL-IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM-CQ 393 (435)
T ss_dssp SSSCEEEEESSSSSSEEEE-CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE-EE
T ss_pred CCCEEEEEECCCCccceEE-ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE-EE
Confidence 9999999999876544322 12211 1133445555555543 3468999999988743 22
Q ss_pred eecCCccceEEE-EEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 389 MLTGHSGPVKCL-AVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 389 ~~~~h~~~v~~l-~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
...+|...|.++ +|+|++. +|++|+ |+.|+||++++++
T Consensus 394 l~~~~~~~v~s~~~fspdg~--------~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 394 LYDPESSGISSLNEFNPMGD--------TLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp ECCSSCCCCCCEEEECTTSS--------CEEEEC-SSEEEECCCC---
T ss_pred EeCCCCCcEEEEEEECCCCC--------EEEEEc-CCcEEEEECCcCe
Confidence 345788889887 6999998 888876 8899999998874
No 45
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.7e-37 Score=295.67 Aligned_cols=292 Identities=24% Similarity=0.347 Sum_probs=228.2
Q ss_pred cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728 146 SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI 223 (474)
Q Consensus 146 ~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 223 (474)
.|...|.+++|+ +++|++|+ ++.+++|++.+++............ ..+. .........+...|
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~--------~~~~------~~~~~~~~~~~~~v 126 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN--------KDPE------NLNTSSSPSSDLYI 126 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------CCCCBE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccc--------cccc------cccccccCCCceeE
Confidence 599999999998 66888876 6889999999876543221110000 0000 00000111244569
Q ss_pred eEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728 224 SSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS 302 (474)
Q Consensus 224 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 302 (474)
.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++ .|++++.|+.|++||++....
T Consensus 127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~------- 199 (393)
T 1erj_A 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC------- 199 (393)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-------
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-------
Confidence 999999999999999999999999999999999999999999999999999 999999999999999975432
Q ss_pred eeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCccccccee------eeecceeeEE--EEecCCEEEEEeCCCc
Q 047728 303 QTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGV------LRGHKLAILC--LVTAGNLVFSGSADMS 373 (474)
Q Consensus 303 ~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~------~~~~~~~v~~--~~~~~~~l~sgs~dg~ 373 (474)
.....+...+.+++|+| ++++|++++.|+.|++||++++...... ..+|...+.+ +++++++|++|+.|+.
T Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 200 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 12233567899999999 8999999999999999999877554332 1456666655 5568999999999999
Q ss_pred EEEEECCCCc----------eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcc
Q 047728 374 ICIWRRKENE----------HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQ 443 (474)
Q Consensus 374 i~iwd~~~~~----------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~ 443 (474)
|++||++... ..+...+.+|...|.+++|+|++. +|++|+.|+.|++||+.++ ..
T Consensus 280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--------~l~sgs~D~~v~iwd~~~~-------~~ 344 (393)
T 1erj_A 280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--------YILSGSKDRGVLFWDKKSG-------NP 344 (393)
T ss_dssp EEEEEC---------------CEEEEEECCSSCEEEEEECGGGC--------EEEEEETTSEEEEEETTTC-------CE
T ss_pred EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC--------EEEEEeCCCeEEEEECCCC-------eE
Confidence 9999997542 123557789999999999999998 9999999999999999887 45
Q ss_pred cccccCCCCCCCccccCC--CCCcCCceeeccC
Q 047728 444 QHPLEGHGVAPNSLPYAP--SFSSQGRICQKRS 474 (474)
Q Consensus 444 ~~~~~~~~~~v~~l~~~p--~~s~Dg~~l~~~s 474 (474)
...+.+|...|.+++|++ .|+||+.+++++|
T Consensus 345 ~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 345 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred EEEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 567889999999999988 5889999998864
No 46
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.9e-37 Score=292.16 Aligned_cols=287 Identities=16% Similarity=0.199 Sum_probs=229.3
Q ss_pred eeeeeecCcEEEEEEc------CCEEEEeeCCCcEEEEeCC--cccccccc-----CccCEEEEEecC------CEEEEE
Q 047728 104 GSLVREEGHIYSLAAA------GDLLYTGSDSKNIRVWKNQ--REFSGFKS-----NSGLVKAIVISN------EKIFSG 164 (474)
Q Consensus 104 ~~l~~h~~~i~~~~~~------~~~l~tgs~dg~v~vwd~~--~~~~~~~~-----h~~~V~~i~~~~------~~l~s~ 164 (474)
....+|.+.|++++++ ..++++++.++.|++||.. +.+..+.. |...|.+++|+. .+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 3455899999999998 3456666667799999955 33333432 668899999983 389999
Q ss_pred eCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCc
Q 047728 165 HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKT 243 (474)
Q Consensus 165 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~ 243 (474)
+.||.|++||+.+++... .+.+|...|.+++|+| ++.+|++++.|+.
T Consensus 92 ~~dg~i~v~d~~~~~~~~--------------------------------~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~ 139 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIK--------------------------------HYVGHGNAINELKFHPRDPNLLLSVSKDHA 139 (366)
T ss_dssp ETTCEEEEECTTTCCEEE--------------------------------EEESCCSCEEEEEECSSCTTEEEEEETTSC
T ss_pred cCCCEEEEEEchhceEee--------------------------------eecCCCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 999999999998875432 2345999999999999 9999999999999
Q ss_pred EEEEEcCCcceeeee---eecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCcee---------------------
Q 047728 244 FKVWRTSDYKCLESV---IAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTK--------------------- 298 (474)
Q Consensus 244 i~iwd~~~~~~~~~~---~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~--------------------- 298 (474)
|++||+++++.+..+ ..|...|.+++|+|++ .|++++.||.|++||++.......
T Consensus 140 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T 3k26_A 140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219 (366)
T ss_dssp EEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred EEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence 999999999998888 6899999999999998 999999999999999875321100
Q ss_pred -eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc-------------cceeeeecceee--EEEEec-
Q 047728 299 -HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS-------------HGGVLRGHKLAI--LCLVTA- 361 (474)
Q Consensus 299 -~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~-------------~~~~~~~~~~~v--~~~~~~- 361 (474)
.........|...|.+++|+ +++|++++.|+.|++||+++... ....+..|...+ ++++++
T Consensus 220 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 297 (366)
T 3k26_A 220 HFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 297 (366)
T ss_dssp CCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT
T ss_pred ccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC
Confidence 00112223488999999999 77999999999999999877643 123334455444 566778
Q ss_pred -CCEEEEEeCCCcEEEEECCCCceE--EEEeecCC--ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 362 -GNLVFSGSADMSICIWRRKENEHI--CLSMLTGH--SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 362 -~~~l~sgs~dg~i~iwd~~~~~~~--~~~~~~~h--~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
+++|++|+.||.|++||+.+++.. ....+.+| ...|++++|+|+++ +|++++.||.|++||+.
T Consensus 298 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--------~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 298 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS--------ILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS--------EEEEEETTSEEEEEEC-
T ss_pred CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC--------eEEEEeCCCEEEEEEec
Confidence 999999999999999999887521 34567777 79999999999999 99999999999999985
No 47
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.4e-36 Score=293.95 Aligned_cols=285 Identities=21% Similarity=0.428 Sum_probs=247.6
Q ss_pred CCCcceeeeeeeeecCcEEEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecCCEEEEEeCCCeEEEE
Q 047728 96 GFSPNVLIGSLVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVW 173 (474)
Q Consensus 96 ~~~~~~~~~~l~~h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vw 173 (474)
+......+..+.+|.+.|+++++++++|++|+.||+|++||.. +.+..+.+|...|.++.++++.|++|+.||.|++|
T Consensus 145 d~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~w 224 (445)
T 2ovr_B 145 SAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 224 (445)
T ss_dssp ETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred ECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEE
Confidence 4445677888999999999999999999999999999999954 56777889999999999999999999999999999
Q ss_pred ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc
Q 047728 174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK 253 (474)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~ 253 (474)
|+.+++... .+.+|...|.+++| ++++|++|+.|+.|++||+++++
T Consensus 225 d~~~~~~~~--------------------------------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~ 270 (445)
T 2ovr_B 225 DIETGQCLH--------------------------------VLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETET 270 (445)
T ss_dssp ESSSCCEEE--------------------------------EEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTE
T ss_pred ECCCCcEEE--------------------------------EEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCc
Confidence 998875432 23458999999999 67899999999999999999999
Q ss_pred eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728 254 CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL 332 (474)
Q Consensus 254 ~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 332 (474)
++..+..|...|.++.+ ++ .+++++.|+.|++||++... ....+..|...+.++.++ ++++++++.||.
T Consensus 271 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~ 340 (445)
T 2ovr_B 271 CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN------CIHTLTGHQSLTSGMELK--DNILVSGNADST 340 (445)
T ss_dssp EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC------EEEEECCCCSCEEEEEEE--TTEEEEEETTSC
T ss_pred EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC------EEEEEcCCcccEEEEEEe--CCEEEEEeCCCe
Confidence 99999999999999999 44 99999999999999998654 345667788889888874 679999999999
Q ss_pred EEEeecCcccccceeee--ecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee-----cCCccceEEEEEeeC
Q 047728 333 VNFWERELNLSHGGVLR--GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML-----TGHSGPVKCLAVEKD 405 (474)
Q Consensus 333 i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-----~~h~~~v~~l~~~~~ 405 (474)
|++||++++........ .|...+.++.+++++|++|+.||.|++||+.+++. +..+ ..|.+.|++++|+|+
T Consensus 341 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~ 418 (445)
T 2ovr_B 341 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF--IRNLVTLESGGSGGVVWRIRASNT 418 (445)
T ss_dssp EEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE--EEEEEECTTGGGTCEEEEEEECSS
T ss_pred EEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCce--eeeeeccccCCCCceEEEEEecCC
Confidence 99999988765533322 37888999999999999999999999999998874 3444 478899999999999
Q ss_pred CccccccceEEEEEecCCCc----EEEEEccCC
Q 047728 406 DESLSREKRWILYSGSLDKS----VKMWRVSEQ 434 (474)
Q Consensus 406 ~~~~~~~~~~~l~s~s~Dg~----i~vw~~~~~ 434 (474)
+. +|++|+.||+ |.|||+...
T Consensus 419 ~~--------~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 419 KL--------VCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EE--------EEEEECSSSSSCCEEEEEECCCC
T ss_pred EE--------EEEEcccCCCCccEEEEEECCCC
Confidence 98 9999999998 999999764
No 48
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-37 Score=322.13 Aligned_cols=204 Identities=11% Similarity=0.038 Sum_probs=163.0
Q ss_pred eeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcccc-ccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCC
Q 047728 104 GSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFS-GFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKD 179 (474)
Q Consensus 104 ~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~-~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~ 179 (474)
....+|.+.|++++|+ +++||+|+.||+|+||+...... ....|...|.+++|+ +++|++++.|++|++||+.+++
T Consensus 11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCS
T ss_pred ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCc
Confidence 3456899999999987 88999999999999999654322 223478899999998 6689999999999999999876
Q ss_pred cceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee----
Q 047728 180 ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL---- 255 (474)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---- 255 (474)
..... .|...|++++|+|++++|++|+.||+|++||++++++.
T Consensus 91 ~~~~~---------------------------------~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i 137 (902)
T 2oaj_A 91 VLTTV---------------------------------FVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL 137 (902)
T ss_dssp EEEEE---------------------------------ECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred EEEEE---------------------------------cCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence 43211 16678999999999999999999999999999988754
Q ss_pred -------eeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeee------------eeeecccccEEE
Q 047728 256 -------ESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFS------------QTLLKQECAVTA 314 (474)
Q Consensus 256 -------~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~v~~ 314 (474)
..+.+|...|.+++|+|++ .+++|+.||.| +||++........... .....|...|.+
T Consensus 138 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~ 216 (902)
T 2oaj_A 138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQ 216 (902)
T ss_dssp CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEE
T ss_pred ccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEE
Confidence 2345688999999999974 89999999999 9999854321100000 001223578999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEeecCcc
Q 047728 315 LAISPDAAIVYCGSSDGLVNFWERELN 341 (474)
Q Consensus 315 l~~~~~~~~l~~~~~dg~i~v~d~~~~ 341 (474)
++|+|++++|++++.|+.|++||++++
T Consensus 217 v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 217 SLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp EEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 999999999999999999999998543
No 49
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=8.7e-37 Score=298.04 Aligned_cols=277 Identities=24% Similarity=0.443 Sum_probs=234.2
Q ss_pred eeeecCcEEEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCccee
Q 047728 106 LVREEGHIYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIH 183 (474)
Q Consensus 106 l~~h~~~i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 183 (474)
..+|...|+|+++++++|++|+.||.|++||.. +....+.+|.+.|.++.+++++|++|+.||+|++||+.+++...
T Consensus 129 ~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~- 207 (435)
T 1p22_A 129 RSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLN- 207 (435)
T ss_dssp CCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEE-
T ss_pred ccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEE-
Confidence 345667799999999999999999999999954 56777889999999999999999999999999999999876432
Q ss_pred eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee---eeeee
Q 047728 184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL---ESVIA 260 (474)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~ 260 (474)
.+.+|...|.+++|++ ..|++|+.|+.|++||+.+++.. ..+.+
T Consensus 208 -------------------------------~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 254 (435)
T 1p22_A 208 -------------------------------TLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVG 254 (435)
T ss_dssp -------------------------------EECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred -------------------------------EEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecC
Confidence 2345899999999974 59999999999999999987765 66778
Q ss_pred cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc
Q 047728 261 HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL 340 (474)
Q Consensus 261 ~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~ 340 (474)
|...|.++.+. ...+++|+.||.|++||++... ....+..|...|.+++++ +.++++|+.||.|++||+++
T Consensus 255 ~~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~ 325 (435)
T 1p22_A 255 HRAAVNVVDFD-DKYIVSASGDRTIKVWNTSTCE------FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC 325 (435)
T ss_dssp CSSCEEEEEEE-TTEEEEEETTSEEEEEETTTCC------EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeC-CCEEEEEeCCCeEEEEECCcCc------EEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCC
Confidence 99999999993 3399999999999999998654 355667889999999994 68999999999999999998
Q ss_pred ccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCce-------EEEEeecCCccceEEEEEeeCCccccccc
Q 047728 341 NLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEH-------ICLSMLTGHSGPVKCLAVEKDDESLSREK 413 (474)
Q Consensus 341 ~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 413 (474)
+... ..+.+|...+.++.+++++|++|+.||.|++||+.++.. .++..+.+|.+.|++++| ++.
T Consensus 326 ~~~~-~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~------ 396 (435)
T 1p22_A 326 GACL-RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEF------ 396 (435)
T ss_dssp CCEE-EEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSS------
T ss_pred CCEE-EEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCC------
Confidence 7654 566789999999999999999999999999999865431 146788899999999999 566
Q ss_pred eEEEEEecCCCcEEEEEccCCCC
Q 047728 414 RWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 414 ~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
+|++++.||.|++||+.+...
T Consensus 397 --~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 397 --QIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp --CEEECCSSSEEEEEC------
T ss_pred --EEEEEeCCCEEEEEECCCCCC
Confidence 799999999999999987643
No 50
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-36 Score=309.77 Aligned_cols=377 Identities=12% Similarity=0.106 Sum_probs=261.1
Q ss_pred CCCCCCCCCCCCcCccCCCCCCCCCCCCCcc----eeeeeeeeecCc-EEEEEE----cCCEEEEeeCCCcEEEEeCC--
Q 047728 70 DSSSPFSKSPWSTHHVSVPTPSNNDDGFSPN----VLIGSLVREEGH-IYSLAA----AGDLLYTGSDSKNIRVWKNQ-- 138 (474)
Q Consensus 70 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~h~~~-i~~~~~----~~~~l~tgs~dg~v~vwd~~-- 138 (474)
..+..++++|..................... ..+..+.+|.+. |.++++ ++++|++|+.||.|++||..
T Consensus 19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~ 98 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 98 (615)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred CceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCC
Confidence 4455666677665443322221222222333 677889999999 999887 45899999999999999974
Q ss_pred --------ccccccccCccCEEEEEec--CCEEEEEeCC----CeEEEEecCCCCcceeee--------ecccCccc-ee
Q 047728 139 --------REFSGFKSNSGLVKAIVIS--NEKIFSGHQD----GKIRVWKVSSKDASIHKR--------VGTLPTFK-DF 195 (474)
Q Consensus 139 --------~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d----g~i~vwd~~~~~~~~~~~--------~~~~~~~~-~~ 195 (474)
+....+..|...|.+++|+ +++|++++.+ +.|++||. ++...... +...+... .+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~~~~~~~~~~~~v~~~~~~~~~~~~l 176 (615)
T 1pgu_A 99 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GNSLGEVSGHSQRINACHLKQSRPMRS 176 (615)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CCEEEECCSCSSCEEEEEECSSSSCEE
T ss_pred cccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CCcceeeecCCccEEEEEECCCCCcEE
Confidence 4456677899999999998 6689999887 68888883 22221111 00111111 11
Q ss_pred eeeecCCCCeEEEeeecc----ceeeeccC---CeeEEEecCC-CCEEEEEECCCcEEEEEcCCcceeeee-e---ecCc
Q 047728 196 IKCSMKPSNYIEVRRHRN----GLWIKHFD---AISSLSMSED-QNLLYSASWDKTFKVWRTSDYKCLESV-I---AHDD 263 (474)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~----~~~~~h~~---~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~-~---~~~~ 263 (474)
+... ....+.++.... ..+.+|.. .|.+++|+|+ +++|++++.|+.|++||+.+++.+..+ . .|..
T Consensus 177 ~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 254 (615)
T 1pgu_A 177 MTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 254 (615)
T ss_dssp EEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred EEEe--CCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCC
Confidence 1111 122333333222 34567888 9999999999 999999999999999999999999998 6 8999
Q ss_pred ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCcee---------------------------------------eeeee
Q 047728 264 AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTK---------------------------------------HFFSQ 303 (474)
Q Consensus 264 ~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~---------------------------------------~~~~~ 303 (474)
.|.+++|+ ++ .+++++.|+.|++||++....... .....
T Consensus 255 ~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~ 333 (615)
T 1pgu_A 255 GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLK 333 (615)
T ss_dssp CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEE
T ss_pred ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEE
Confidence 99999999 77 999999999999999874321100 01112
Q ss_pred eeecccc---------------------------------cEEEEEEcCCCCEEEEEcCCCcEEEeecC-----------
Q 047728 304 TLLKQEC---------------------------------AVTALAISPDAAIVYCGSSDGLVNFWERE----------- 339 (474)
Q Consensus 304 ~~~~~~~---------------------------------~v~~l~~~~~~~~l~~~~~dg~i~v~d~~----------- 339 (474)
.+..|.. .|.+++| +++..|++++.|+.|++||+.
T Consensus 334 ~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~ 412 (615)
T 1pgu_A 334 TISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVA 412 (615)
T ss_dssp EECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEE
T ss_pred EEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEE
Confidence 2223333 3444444 224555555555555555543
Q ss_pred ---------------------------------------------------------------cccccceeeeecceeeE
Q 047728 340 ---------------------------------------------------------------LNLSHGGVLRGHKLAIL 356 (474)
Q Consensus 340 ---------------------------------------------------------------~~~~~~~~~~~~~~~v~ 356 (474)
........+..|...+.
T Consensus 413 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~ 492 (615)
T 1pgu_A 413 SANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS 492 (615)
T ss_dssp EECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEE
T ss_pred EEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceE
Confidence 22111122334555554
Q ss_pred --EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC-CccceEEEEEee----------CCccccccceEEEEEecCC
Q 047728 357 --CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG-HSGPVKCLAVEK----------DDESLSREKRWILYSGSLD 423 (474)
Q Consensus 357 --~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~~~----------~~~~~~~~~~~~l~s~s~D 423 (474)
++++++++|++|+.||.|++||+.+++ .+..+.+ |...|++++|+| ++. +|++++.|
T Consensus 493 ~~~~s~~g~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~--------~l~~~~~d 562 (615)
T 1pgu_A 493 YISISPSETYIAAGDVMGKILLYDLQSRE--VKTSRWAFRTSKINAISWKPAEKGANEEEIEED--------LVATGSLD 562 (615)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTE--EEECCSCCCSSCEEEEEECCCC------CCSCC--------EEEEEETT
T ss_pred EEEECCCCCEEEEcCCCCeEEEeeCCCCc--ceeEeecCCCCceeEEEEcCccccccccccCCC--------EEEEEcCC
Confidence 455689999999999999999999887 4567777 999999999999 888 99999999
Q ss_pred CcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728 424 KSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 424 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
|.|++|++.++. .....+.+|...|+++ +|+|||+ |+++
T Consensus 563 g~i~iw~~~~~~------~~~~~~~~h~~~v~~l----~~s~~~~-l~s~ 601 (615)
T 1pgu_A 563 TNIFIYSVKRPM------KIIKALNAHKDGVNNL----LWETPST-LVSS 601 (615)
T ss_dssp SCEEEEESSCTT------CCEEETTSSTTCEEEE----EEEETTE-EEEE
T ss_pred CcEEEEECCCCc------eechhhhcCccceEEE----EEcCCCC-eEEe
Confidence 999999998763 3455678899999999 6788898 6654
No 51
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-36 Score=288.26 Aligned_cols=289 Identities=13% Similarity=0.135 Sum_probs=232.9
Q ss_pred eeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc----cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCC
Q 047728 106 LVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR----EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSS 177 (474)
Q Consensus 106 l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~----~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~ 177 (474)
+..|++.|++++++ +++|++|+.||.|++||... .+..+.+|...|.+++|+ +++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 44588999999886 78999999999999999542 677788999999999998 77999999999999999987
Q ss_pred CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce---
Q 047728 178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC--- 254 (474)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~--- 254 (474)
++..... .+..|...|.+++|+|++++|++++.|+.|++||+..++.
T Consensus 84 ~~~~~~~------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~ 133 (372)
T 1k8k_C 84 RTWKPTL------------------------------VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 133 (372)
T ss_dssp TEEEEEE------------------------------ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred CeeeeeE------------------------------EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCccee
Confidence 6532221 1234888999999999999999999999999999988763
Q ss_pred eee-eeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc------------eeeeeeeeeecccccEEEEEEcCC
Q 047728 255 LES-VIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG------------TKHFFSQTLLKQECAVTALAISPD 320 (474)
Q Consensus 255 ~~~-~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~v~~l~~~~~ 320 (474)
... ...|...|.+++|+|++ .+++++.||.|++||++..... ........+..|...|.+++|+|+
T Consensus 134 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 213 (372)
T 1k8k_C 134 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 213 (372)
T ss_dssp EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC
Confidence 223 35678999999999998 8999999999999997522100 011234556688899999999999
Q ss_pred CCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCC--CceEEE---------
Q 047728 321 AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKE--NEHICL--------- 387 (474)
Q Consensus 321 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~--~~~~~~--------- 387 (474)
+++|++++.|+.|++||+++.... ..+..|...+ +++++++.+|++| .|+.|++|++.. ++..++
T Consensus 214 ~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 291 (372)
T 1k8k_C 214 GSRVAWVSHDSTVCLADADKKMAV-ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQS 291 (372)
T ss_dssp SSEEEEEETTTEEEEEEGGGTTEE-EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC---
T ss_pred CCEEEEEeCCCEEEEEECCCCcee-EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccc
Confidence 999999999999999999887655 4455666555 5566788888877 899999999987 431111
Q ss_pred ---------------------------Eee-cCCccceEEEEEee-CC---ccccccceEEEEEecCCCcEEEEEccCC
Q 047728 388 ---------------------------SML-TGHSGPVKCLAVEK-DD---ESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 388 ---------------------------~~~-~~h~~~v~~l~~~~-~~---~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
..+ .+|..+|++++|.+ ++ . +|++|+.||.|++|++.+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~--------~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 292 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS--------QFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp -----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS--------EEEEEETTSEEEEEEHHHH
T ss_pred hhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee--------eEEEecCCCceEEEEecCh
Confidence 223 48999999999775 44 6 8999999999999999875
No 52
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=274.95 Aligned_cols=285 Identities=20% Similarity=0.306 Sum_probs=239.3
Q ss_pred CCcceeeeeeeeecCcEEEEEEc-CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEE
Q 047728 97 FSPNVLIGSLVREEGHIYSLAAA-GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIR 171 (474)
Q Consensus 97 ~~~~~~~~~l~~h~~~i~~~~~~-~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~ 171 (474)
+.+.+++..+.+|.+.|.++++. +++|++|+.||.|++||.. +....+..|...|.+++|+ +++|++++.||.|+
T Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 5 FTGYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp CCCCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred cccHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 45568889999999999998864 8899999999999999954 4566778899999999998 67999999999999
Q ss_pred EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC
Q 047728 172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD 251 (474)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 251 (474)
+|++........ ...+.+|...|.+++| ++++|++++.|+.|++|| .
T Consensus 85 ~~~~~~~~~~~~-----------------------------~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~ 131 (313)
T 3odt_A 85 GVPLFATSGEDP-----------------------------LYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--E 131 (313)
T ss_dssp EEETTCCTTSCC------------------------------CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--T
T ss_pred EEEeeecCCCCc-----------------------------ccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--C
Confidence 999977542211 1233459999999999 577999999999999999 6
Q ss_pred cceeeeeeecCcceeEEEecC-CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeec-ccccEEEEEEcCCCCEEEEEc
Q 047728 252 YKCLESVIAHDDAVNSIVAGF-DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK-QECAVTALAISPDAAIVYCGS 328 (474)
Q Consensus 252 ~~~~~~~~~~~~~v~~v~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~ 328 (474)
++.+..+..|...+.++.+.+ ++ .+++++.||.|++||... ....... +...+.+++|+|++. +++++
T Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~ 202 (313)
T 3odt_A 132 GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--------VIKTFSGIHNDVVRHLAVVDDGH-FISCS 202 (313)
T ss_dssp TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--------EEEEECSSCSSCEEEEEEEETTE-EEEEE
T ss_pred CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--------eEEEEeccCcccEEEEEEcCCCe-EEEcc
Confidence 788888899999999999988 55 999999999999999432 2333444 888999999999998 88999
Q ss_pred CCCcEEEeecCcccccceeeeecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC
Q 047728 329 SDGLVNFWERELNLSHGGVLRGHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD 406 (474)
Q Consensus 329 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 406 (474)
.|+.|++||++++... ..+.+|...+.++.+ ++ .|++++.||.|++||+.+++ .+..+..|...|.+++|+|++
T Consensus 203 ~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~ 278 (313)
T 3odt_A 203 NDGLIKLVDMHTGDVL-RTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS--LKQVITLPAISIWSVDCMSNG 278 (313)
T ss_dssp TTSEEEEEETTTCCEE-EEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC--EEEEEECSSSCEEEEEECTTS
T ss_pred CCCeEEEEECCchhhh-hhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc--eeEEEeccCceEEEEEEccCC
Confidence 9999999999987654 455678777766654 56 69999999999999999887 567788899999999999999
Q ss_pred ccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 407 ESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 407 ~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
. +++++.||.|++|++.++..
T Consensus 279 ~---------~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 279 D---------IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp C---------EEEEETTSCEEEEESCGGGC
T ss_pred C---------EEEEeCCCcEEEEeCCCCce
Confidence 7 55689999999999988643
No 53
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=286.08 Aligned_cols=289 Identities=14% Similarity=0.216 Sum_probs=231.5
Q ss_pred cceeeeeeeeecCcEEEEEEc--C-CEEEEeeC---CCcEEEEeCCcc--c-cccccCccCEEEEEecC-----CEEEEE
Q 047728 99 PNVLIGSLVREEGHIYSLAAA--G-DLLYTGSD---SKNIRVWKNQRE--F-SGFKSNSGLVKAIVISN-----EKIFSG 164 (474)
Q Consensus 99 ~~~~~~~l~~h~~~i~~~~~~--~-~~l~tgs~---dg~v~vwd~~~~--~-~~~~~h~~~V~~i~~~~-----~~l~s~ 164 (474)
|......+.+|.+.|.+++++ + .++++|+. ||.|+|||.... . .....|...|.+++|++ ++|+++
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 445555678899999999987 4 36667776 999999996532 2 22337899999999982 789999
Q ss_pred eCCCeEEEEecCCCC-cceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEE------ecCCCCEEEE
Q 047728 165 HQDGKIRVWKVSSKD-ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLS------MSEDQNLLYS 237 (474)
Q Consensus 165 ~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~------~~~~~~~l~s 237 (474)
+.||.|++||+.+++ .. ..+.+|...|.+++ |+|++++|++
T Consensus 87 ~~dg~i~iwd~~~~~~~~--------------------------------~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~ 134 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPEMPV--------------------------------YSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134 (357)
T ss_dssp ETTSCEEEECTTSCSSCS--------------------------------EEECCCSSCEEEEEEESGGGCC-CCCEEEE
T ss_pred cCCCeEEEEeCCCCCccE--------------------------------EEEEecccceEEEeeccccccCCCccEEEE
Confidence 999999999999876 22 12345999999995 5678999999
Q ss_pred EECCCcEEEEEcCCcc-eeeeeeecCc----ceeEEE----ecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeec
Q 047728 238 ASWDKTFKVWRTSDYK-CLESVIAHDD----AVNSIV----AGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK 307 (474)
Q Consensus 238 ~s~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~v~----~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 307 (474)
++.|+.|++||+++++ .+..+..|.. .+.+++ |++++ .+++++.||.|++||++... ......
T Consensus 135 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~ 207 (357)
T 3i2n_A 135 GSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-------LRWETN 207 (357)
T ss_dssp EETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-------EEEEEE
T ss_pred EeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-------eeeecC
Confidence 9999999999999887 6777766554 788888 67788 89999999999999998543 233466
Q ss_pred ccccEEEEEEcC---CCCEEEEEcCCCcEEEeecCcccccceee----eecceeeEEE--EecCC-EEEEEeCCCcEEEE
Q 047728 308 QECAVTALAISP---DAAIVYCGSSDGLVNFWERELNLSHGGVL----RGHKLAILCL--VTAGN-LVFSGSADMSICIW 377 (474)
Q Consensus 308 ~~~~v~~l~~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----~~~~~~v~~~--~~~~~-~l~sgs~dg~i~iw 377 (474)
+...|.+++|+| ++.+|++++.||.|++||+++........ .+|...+.++ ++++. +|++|+.||.|++|
T Consensus 208 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 287 (357)
T 3i2n_A 208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW 287 (357)
T ss_dssp CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence 788999999999 99999999999999999998775543332 3677777554 55666 89999999999999
Q ss_pred ECCCCce-----------------EEEEeecCCccceEEEEEeeCCccccccceEEEE-EecCCCcEEEEEccCC
Q 047728 378 RRKENEH-----------------ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY-SGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 378 d~~~~~~-----------------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~-s~s~Dg~i~vw~~~~~ 434 (474)
|++.... ..+..+.+|..+|++++|+|+++ +|+ +++.||.|++|++.+.
T Consensus 288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--------~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR--------GLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST--------TEEEEEETTSEEEEEEECC-
T ss_pred ecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC--------eEEEEecCCCcEEEEECCCc
Confidence 9975432 35678889999999999999998 676 8999999999999865
No 54
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.3e-36 Score=285.08 Aligned_cols=285 Identities=14% Similarity=0.119 Sum_probs=216.9
Q ss_pred CcEEEEEEc--CCEEEEeeCCC-------cEEEEeCCcc------------ccccccCccCEEEEEecCCEEEEEe----
Q 047728 111 GHIYSLAAA--GDLLYTGSDSK-------NIRVWKNQRE------------FSGFKSNSGLVKAIVISNEKIFSGH---- 165 (474)
Q Consensus 111 ~~i~~~~~~--~~~l~tgs~dg-------~v~vwd~~~~------------~~~~~~h~~~V~~i~~~~~~l~s~~---- 165 (474)
-+|+|++|. +++|++|+.+. .|++|+.... ...+..|...|.+++++++.+++|.
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~ 94 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENS 94 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCH
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCc
Confidence 379998875 88999987543 5999985421 1235678889999999998888775
Q ss_pred -------CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE
Q 047728 166 -------QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA 238 (474)
Q Consensus 166 -------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 238 (474)
.|+.+|+|++............ ........+...+.+++|+|||++++++
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~v~fSpDg~~la~a 151 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKVNDQLEFLTS-----------------------VDFDASTNADDYTKLVYISREGTVAAIA 151 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETTTTEEEEEEE-----------------------ECSSCCCCTTCCEEEEEECTTSSCEEEE
T ss_pred cEEEEecCCCcEEEEEecCCCceEEEeee-----------------------eceeecCCcccCEEEEEEcCCCCEEEEE
Confidence 4677888888765433211100 0001122356678999999999998765
Q ss_pred E--CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728 239 S--WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL 315 (474)
Q Consensus 239 s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 315 (474)
+ .|++|+|||+++++++..+. |...|.+++|+|++ ++++++ ++.+++|+...+.. ........|...|.++
T Consensus 152 s~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~v 225 (365)
T 4h5i_A 152 SSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSC----IARKTDFDKNWSLSKI 225 (365)
T ss_dssp ESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCE----EEEECCCCTTEEEEEE
T ss_pred ECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecc-ceeEEEEEeccCcc----eeeeecCCCCCCEEEE
Confidence 5 78999999999999988885 77889999999999 666666 55667776654332 1233455688899999
Q ss_pred EEcCCCCEEEEEcCCC----cEEEeecCccccc---ceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEE
Q 047728 316 AISPDAAIVYCGSSDG----LVNFWERELNLSH---GGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHIC 386 (474)
Q Consensus 316 ~~~~~~~~l~~~~~dg----~i~v~d~~~~~~~---~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~ 386 (474)
+|+|+++++++++.|+ .+++|++...... ...+.+|...| ++++|+|++|++|+.|++|+|||+++++ +
T Consensus 226 ~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~--~ 303 (365)
T 4h5i_A 226 NFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS--M 303 (365)
T ss_dssp EEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE--E
T ss_pred EEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc--E
Confidence 9999999999998887 5788887655322 23345666666 4567799999999999999999999987 4
Q ss_pred EEe-ecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 387 LSM-LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 387 ~~~-~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+.. +.+|..+|++|+|+||++ +|+|||.|++|+||++...
T Consensus 304 ~~~~~~gH~~~V~~v~fSpdg~--------~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 304 SKIFKQAHSFAITEVTISPDST--------YVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSSSSCEEEEEECTTSC--------EEEEEETTSEEEEEECCTT
T ss_pred EEEecCcccCCEEEEEECCCCC--------EEEEEeCCCeEEEEEcCCC
Confidence 444 578999999999999999 9999999999999999754
No 55
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-35 Score=287.26 Aligned_cols=284 Identities=19% Similarity=0.251 Sum_probs=233.3
Q ss_pred eeeeecCc--EEEEEEcCCEEEEeeCCCcEEEEeCC--cccccccc-CccCEEEEEec--CCEEEEEeCCCeEEEEecCC
Q 047728 105 SLVREEGH--IYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKS-NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSS 177 (474)
Q Consensus 105 ~l~~h~~~--i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~-h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~ 177 (474)
...+|... +.+++++++.+++++.||.|++||.. +....+.. |...|.+++|+ +++|++|+.||.|++||+.+
T Consensus 86 ~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp ECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 33455544 66788988888999999999999954 33334443 88999999998 67999999999999999988
Q ss_pred CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC-Ccceee
Q 047728 178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS-DYKCLE 256 (474)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~ 256 (474)
++... .+.+|...|.+++| ++++|++++.|+.|++||++ ....+.
T Consensus 166 ~~~~~--------------------------------~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~ 211 (401)
T 4aez_A 166 QTKLR--------------------------------TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIG 211 (401)
T ss_dssp CCEEE--------------------------------EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred CeEEE--------------------------------EecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceee
Confidence 75432 23359999999999 45799999999999999998 567788
Q ss_pred eeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEEEc--CCCc
Q 047728 257 SVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYCGS--SDGL 332 (474)
Q Consensus 257 ~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~--~dg~ 332 (474)
.+..|...|.+++|+|++ .|++++.|+.|++||++... ....+..|...|.+++|+|++ .++++++ .|+.
T Consensus 212 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~ 285 (401)
T 4aez_A 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ 285 (401)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE
Confidence 889999999999999998 99999999999999998643 345566789999999999966 5666654 7999
Q ss_pred EEEeecCcccccceeeeecceeeEEEEecCCEEEE--EeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcccc
Q 047728 333 VNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFS--GSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLS 410 (474)
Q Consensus 333 i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s--gs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 410 (474)
|++||++++..............++++++++++++ |+.||.|++||+.+++......+.+|...|.+++|+|++.
T Consensus 286 i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--- 362 (401)
T 4aez_A 286 IHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGR--- 362 (401)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSS---
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCC---
Confidence 99999998876654443344455667778999999 4489999999999887666677889999999999999999
Q ss_pred ccceEEEEEecCCCcEEEEEccCCCC
Q 047728 411 REKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 411 ~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
+|++++.||.|++|++.+++.
T Consensus 363 -----~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 363 -----ILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp -----EEEEECTTSEEEEEECCC---
T ss_pred -----EEEEEeCCCcEEEEECCCCcc
Confidence 999999999999999988753
No 56
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-36 Score=296.15 Aligned_cols=292 Identities=17% Similarity=0.276 Sum_probs=224.9
Q ss_pred ceeeeee-eeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCc---c--c-cccc-cCccCEEEEEec--CCEEEEEeC
Q 047728 100 NVLIGSL-VREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQR---E--F-SGFK-SNSGLVKAIVIS--NEKIFSGHQ 166 (474)
Q Consensus 100 ~~~~~~l-~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~---~--~-~~~~-~h~~~V~~i~~~--~~~l~s~~~ 166 (474)
..++.++ .+|.+.|++++++ +++|++|+.||+|+|||... . . ..+. .|...|.+++|+ +++|++++.
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeC
Confidence 4677788 8899999998875 57999999999999998543 1 1 1222 599999999998 579999999
Q ss_pred CCeEEEEecC---CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee--ccCCeeEEE--ecCCCCEEEEEE
Q 047728 167 DGKIRVWKVS---SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK--HFDAISSLS--MSEDQNLLYSAS 239 (474)
Q Consensus 167 dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~l~--~~~~~~~l~s~s 239 (474)
||.|++||++ .++.......... ....+.. +...+.++. +++++.+|++++
T Consensus 132 dg~i~vwd~~~~~~~~~~~~~~~~~i----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVKFLNCECI----------------------RKINLKNFGKNEYAVRMRAFVNEEKSLLVALT 189 (437)
T ss_dssp TSEEEEEEEEEEEETTEEEEEEEEEE----------------------EEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE
T ss_pred CCEEEEEEeccccCCceeecccccee----------------------EEEEccCcccccCceEEEEEEcCCCCEEEEEe
Confidence 9999999995 3333221111000 0001111 566788887 568899999999
Q ss_pred CCCcEEEEEcCCcceeeeeee--cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeee-ecccccEEEE
Q 047728 240 WDKTFKVWRTSDYKCLESVIA--HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL-LKQECAVTAL 315 (474)
Q Consensus 240 ~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~l 315 (474)
.|+.|++||+++++++..+.. |...|.+++|+|++ .|++|+.||.|++||++... ....+ ..+...|.++
T Consensus 190 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~ 263 (437)
T 3gre_A 190 NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV------LIRSWSFGDHAPITHV 263 (437)
T ss_dssp TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE------EEEEEBCTTCEEEEEE
T ss_pred CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc------EEEEEecCCCCceEEE
Confidence 999999999999999999988 89999999999999 89999999999999998533 23333 2677899999
Q ss_pred EEcC----CCCEEEEEcCCCcEEEeecCcccccceee-----------------------ee--cceee--EEEEecCCE
Q 047728 316 AISP----DAAIVYCGSSDGLVNFWERELNLSHGGVL-----------------------RG--HKLAI--LCLVTAGNL 364 (474)
Q Consensus 316 ~~~~----~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-----------------------~~--~~~~v--~~~~~~~~~ 364 (474)
+|+| ++.+|++++.|+.|++||++++....... .+ |...+ ++++ ++++
T Consensus 264 ~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~ 342 (437)
T 3gre_A 264 EVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKI 342 (437)
T ss_dssp EECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEE
T ss_pred EeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceE
Confidence 6665 67799999999999999998775433222 11 44444 4455 6789
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeec-------------------------------------CCccceEEEEEeeC--
Q 047728 365 VFSGSADMSICIWRRKENEHICLSMLT-------------------------------------GHSGPVKCLAVEKD-- 405 (474)
Q Consensus 365 l~sgs~dg~i~iwd~~~~~~~~~~~~~-------------------------------------~h~~~v~~l~~~~~-- 405 (474)
|++|+.|+.|++||+.+++.. ..+. .|...|++++|.++
T Consensus 343 l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~ 420 (437)
T 3gre_A 343 LLTDEATSSIVMFSLNELSSS--KAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE 420 (437)
T ss_dssp EEEEGGGTEEEEEETTCGGGC--EEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS
T ss_pred EEecCCCCeEEEEECCCcccc--eEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC
Confidence 999999999999999887632 2222 28999999999998
Q ss_pred CccccccceEEEEEecCCCcEEEEE
Q 047728 406 DESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 406 ~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
+. +|++|+.||.|+||+
T Consensus 421 ~~--------~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 421 TP--------LLVACDNSGLIGIFQ 437 (437)
T ss_dssp SE--------EEEEEETTSCEEEEC
T ss_pred ce--------EEEEEcCCceEEEeC
Confidence 55 899999999999995
No 57
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-37 Score=298.56 Aligned_cols=291 Identities=14% Similarity=0.156 Sum_probs=237.1
Q ss_pred eeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc------cccccccCccCEEEEEec---CCEEEEEeCCCeEEEEec
Q 047728 107 VREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR------EFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKV 175 (474)
Q Consensus 107 ~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~------~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~ 175 (474)
..|.+.|.+++++ +++|++|+.||.|++||... ....+..|...|.+++|+ +++|++++.||.|++||+
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 3588899999986 78999999999999999654 667788999999999998 568999999999999999
Q ss_pred CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCCcEEEEEcCCcce
Q 047728 176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDKTFKVWRTSDYKC 254 (474)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iwd~~~~~~ 254 (474)
.+.+........ .....+..|...|.+++|+|+ +.+|++++.|+.|++||+++++.
T Consensus 144 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 200 (416)
T 2pm9_A 144 NKCTESPSNYTP-----------------------LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE 200 (416)
T ss_dssp TTTSSCTTTCCC-----------------------BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred CCCccccccccc-----------------------cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence 887521000000 000122458999999999998 78999999999999999999999
Q ss_pred eeeeeec------CcceeEEEecCCC--eEEEeeCCC---cEEEEEcccCCCceeeeeeeeee-cccccEEEEEEcC-CC
Q 047728 255 LESVIAH------DDAVNSIVAGFDG--LVFTGSADG---TVKVWRRELQGKGTKHFFSQTLL-KQECAVTALAISP-DA 321 (474)
Q Consensus 255 ~~~~~~~------~~~v~~v~~~~~~--~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~-~~ 321 (474)
+..+..+ ...|.+++|+|++ .+++++.|+ .|++||++.... ....+. .|...|.+++|+| ++
T Consensus 201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~ 275 (416)
T 2pm9_A 201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-----PLQTLNQGHQKGILSLDWCHQDE 275 (416)
T ss_dssp EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-----CSBCCCSCCSSCEEEEEECSSCS
T ss_pred ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-----CcEEeecCccCceeEEEeCCCCC
Confidence 9888776 7899999999997 899999998 999999986533 234455 7889999999999 99
Q ss_pred CEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecC-CEEEEEeCCCcEEEEECCCCceEEE-----------
Q 047728 322 AIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAG-NLVFSGSADMSICIWRRKENEHICL----------- 387 (474)
Q Consensus 322 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~----------- 387 (474)
++|++++.|+.|++||+++.... ..+..|...+ +++++++ .+|++++.|+.|++||+........
T Consensus 276 ~~l~s~~~dg~v~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 354 (416)
T 2pm9_A 276 HLLLSSGRDNTVLLWNPESAEQL-SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQES 354 (416)
T ss_dssp SCEEEEESSSEEEEECSSSCCEE-EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------
T ss_pred CeEEEEeCCCCEEEeeCCCCccc-eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCC
Confidence 99999999999999999987654 4556676666 5666777 8999999999999999976542110
Q ss_pred ----E------------------eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 388 ----S------------------MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 388 ----~------------------~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
. ....|..++.+++|+|+++ +|++++.|+.|+||++.+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--------~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 355 ETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK--------LVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE--------EECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccccccccccccccCCccccCCccceEEeeCCe--------EEEEeCCCCeEEEEEeccC
Confidence 0 0111677888999999999 9999999999999999764
No 58
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.7e-37 Score=292.53 Aligned_cols=290 Identities=14% Similarity=0.114 Sum_probs=218.2
Q ss_pred eeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC----ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCC
Q 047728 106 LVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ----REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSS 177 (474)
Q Consensus 106 l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~ 177 (474)
+..|.+.|++++++ +++|++|+.||.|+|||.. +....+.+|...|.+++|+ +++|++++.|++|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 34467789888876 8899999999999999854 5677888999999999998 67999999999999999988
Q ss_pred CC-cceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc---
Q 047728 178 KD-ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK--- 253 (474)
Q Consensus 178 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--- 253 (474)
++ .... ..+.+|...|.+++|+|++++|++++.|+.|++||+++++
T Consensus 87 ~~~~~~~------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 136 (377)
T 3dwl_C 87 DGTWKQT------------------------------LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW 136 (377)
T ss_dssp --CCCCE------------------------------EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC
T ss_pred CCceeee------------------------------eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce
Confidence 75 1111 1234599999999999999999999999999999999877
Q ss_pred eeeeeee-cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc------------eeeeeeeeeecccccEEEEEEcC
Q 047728 254 CLESVIA-HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG------------TKHFFSQTLLKQECAVTALAISP 319 (474)
Q Consensus 254 ~~~~~~~-~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~v~~l~~~~ 319 (474)
....+.. |...|.+++|+|++ +|++++.|+.|++||++..... ........+ .|...|.+++|+|
T Consensus 137 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp 215 (377)
T 3dwl_C 137 VSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP 215 (377)
T ss_dssp CCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT
T ss_pred eeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC
Confidence 4677777 99999999999998 9999999999999998633211 112233444 8899999999999
Q ss_pred CCCEEEEEcCCCcEEEeecCccccc---ceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceE---------
Q 047728 320 DAAIVYCGSSDGLVNFWERELNLSH---GGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHI--------- 385 (474)
Q Consensus 320 ~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~--------- 385 (474)
++++|++++.|+.|++||++++... ...+.+|...+ +++++++++|++|+.|+.+ +|+.......
T Consensus 216 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 294 (377)
T 3dwl_C 216 SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGT 294 (377)
T ss_dssp TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCC
T ss_pred CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccc
Confidence 9999999999999999999987652 34566777666 5566789999998866665 6665421100
Q ss_pred -------------------EE------E----------------eecCCccceEEEEEeeCCccccccceEEEEEecCCC
Q 047728 386 -------------------CL------S----------------MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424 (474)
Q Consensus 386 -------------------~~------~----------------~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg 424 (474)
.. . ....|...|+++++.+.... ....|+||+.||
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~----~~~~~~s~g~Dg 370 (377)
T 3dwl_C 295 SKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPG----NITAFTSSGTDG 370 (377)
T ss_dssp CCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETT----EEEEEEEEETTS
T ss_pred cccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCC----ceEEEEeecCCC
Confidence 00 0 11239999999998776531 112599999999
Q ss_pred cEEEEEc
Q 047728 425 SVKMWRV 431 (474)
Q Consensus 425 ~i~vw~~ 431 (474)
.|+|||+
T Consensus 371 ~i~iWdl 377 (377)
T 3dwl_C 371 RVVLWTL 377 (377)
T ss_dssp EEEEECC
T ss_pred cEEEecC
Confidence 9999986
No 59
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.3e-35 Score=283.76 Aligned_cols=295 Identities=17% Similarity=0.187 Sum_probs=234.2
Q ss_pred ceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCCcc--cccc-------------ccCccCEEEEEec---C
Q 047728 100 NVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQRE--FSGF-------------KSNSGLVKAIVIS---N 158 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~~~--~~~~-------------~~h~~~V~~i~~~---~ 158 (474)
......+.+|.+.|++++++ +++|++|+.||.|++||.... ...+ .+|...|.+++|+ +
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence 34556677899999999985 689999999999999996532 2222 3599999999997 3
Q ss_pred CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC---CCCEE
Q 047728 159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE---DQNLL 235 (474)
Q Consensus 159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~l 235 (474)
.+|++++.||.|++||+.+++..... .+...+.++.+.+ ++.++
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~ 159 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTADVF---------------------------------NFEETVYSHHMSPVSTKHCLV 159 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEEEEE---------------------------------ECSSCEEEEEECSSCSSCCEE
T ss_pred cEEEEEeCCCeEEEeeCCCCccceec---------------------------------cCCCceeeeEeecCCCCCcEE
Confidence 58999999999999999987543221 2677889999988 44599
Q ss_pred EEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceee----------eeee
Q 047728 236 YSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKH----------FFSQ 303 (474)
Q Consensus 236 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~----------~~~~ 303 (474)
++++.|+.|++||+++++.+..+..|...|.+++|+|++ .+++++.||.|++||++........ ....
T Consensus 160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 239 (408)
T 4a11_B 160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES 239 (408)
T ss_dssp EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTT
T ss_pred EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecc
Confidence 999999999999999999999999999999999999998 5889999999999999865421110 0112
Q ss_pred eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-----cceeeEEE-EecCCEEEEEeCCCcEEEE
Q 047728 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-----HKLAILCL-VTAGNLVFSGSADMSICIW 377 (474)
Q Consensus 304 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----~~~~v~~~-~~~~~~l~sgs~dg~i~iw 377 (474)
....|...|.+++|+|++++|++++.|+.|++||++++......... .......+ ...+..+++++.|+.|++|
T Consensus 240 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 319 (408)
T 4a11_B 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVY 319 (408)
T ss_dssp SSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEE
T ss_pred ccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEE
Confidence 22578889999999999999999999999999999887554322111 11111222 2245677777889999999
Q ss_pred ECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728 378 RRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPP 437 (474)
Q Consensus 378 d~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~ 437 (474)
|+.+++ .+..+.+|...|++++|+|++. +|++++.||.|++|++.+.++.
T Consensus 320 d~~~~~--~~~~~~~~~~~v~~~~~s~~~~--------~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 320 TVYSGE--QITMLKGHYKTVDCCVFQSNFQ--------ELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp ETTTCC--EEEEECCCSSCEEEEEEETTTT--------EEEEEETTSCEEEEEECC----
T ss_pred ECcCCc--ceeeeccCCCeEEEEEEcCCCC--------EEEEECCCCeEEEEeCCCCCcc
Confidence 999888 5678899999999999999998 9999999999999999987544
No 60
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.7e-36 Score=327.86 Aligned_cols=288 Identities=17% Similarity=0.275 Sum_probs=244.0
Q ss_pred eeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecC
Q 047728 103 IGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVS 176 (474)
Q Consensus 103 ~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~ 176 (474)
...+.+|.+.|++++++ +++|++|+.||+|++||.. +.+..+.+|...|.+++|+ +++|++++.||+|++||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 34678999999998886 8899999999999999954 5677888999999999998 6799999999999999999
Q ss_pred CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC--CCCEEEEEECCCcEEEEEcCCcce
Q 047728 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE--DQNLLYSASWDKTFKVWRTSDYKC 254 (474)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~ 254 (474)
+++... .+.+|...|.+++|+| ++.++++|+.|+.|++||+.++++
T Consensus 688 ~~~~~~--------------------------------~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~ 735 (1249)
T 3sfz_A 688 TGKLVH--------------------------------TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC 735 (1249)
T ss_dssp TCCEEE--------------------------------EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred CCceEE--------------------------------EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence 876532 2345999999999999 566899999999999999999999
Q ss_pred eeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeee-------eeecccccEEEEEEcCCCCEEEE
Q 047728 255 LESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQ-------TLLKQECAVTALAISPDAAIVYC 326 (474)
Q Consensus 255 ~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~v~~l~~~~~~~~l~~ 326 (474)
+..+.+|...|.+++|+|++ .+++++.||.|++||++............ ........+.+++|+|++..+++
T Consensus 736 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1249)
T 3sfz_A 736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 815 (1249)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE
T ss_pred hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEE
Confidence 99999999999999999999 99999999999999998653211111100 11123447889999999999998
Q ss_pred EcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEee
Q 047728 327 GSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK 404 (474)
Q Consensus 327 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~ 404 (474)
++ ++.+.+||+.++........+|...+ +++++++.++++++.||.|++||+.++. .+..+.+|...|++++|+|
T Consensus 816 ~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~--~~~~~~~h~~~v~~v~~sp 892 (1249)
T 3sfz_A 816 AA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL--KVADCRGHLSWVHGVMFSP 892 (1249)
T ss_dssp EE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE--EEEEECCCSSCEEEEEECT
T ss_pred Ec-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc--eeeecCCCccceEEEEECC
Confidence 87 68999999998877766666776665 5566789999999999999999999887 5678889999999999999
Q ss_pred CCccccccceEEEEEecCCCcEEEEEccC
Q 047728 405 DDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 405 ~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
++. +|++++.||.|++|++..
T Consensus 893 dg~--------~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 893 DGS--------SFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp TSS--------EEEEEETTSCEEEEEHHH
T ss_pred CCC--------EEEEEeCCCeEEEEEccc
Confidence 998 899999999999999753
No 61
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.6e-35 Score=309.28 Aligned_cols=287 Identities=18% Similarity=0.254 Sum_probs=241.9
Q ss_pred eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728 101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWK 174 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd 174 (474)
.+.+.+.+|.+.|.+++++ +++|++|+.||.|+|||.. +.+..+..|...|.+++|+ +++|++++.||.|++|+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 3567889999999999987 8899999999999999954 5677888999999999998 67999999999999999
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc-c
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY-K 253 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~ 253 (474)
+.+++... .+.+|...|++++|+|++++|++++.|+.|++||+.++ .
T Consensus 84 ~~~~~~~~--------------------------------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 131 (814)
T 3mkq_A 84 YNTGEKVV--------------------------------DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131 (814)
T ss_dssp TTTCCEEE--------------------------------EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE
T ss_pred CCCCcEEE--------------------------------EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce
Confidence 98876432 23459999999999999999999999999999999886 6
Q ss_pred eeeeeeecCcceeEEEecC-CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC--CCCEEEEEcC
Q 047728 254 CLESVIAHDDAVNSIVAGF-DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP--DAAIVYCGSS 329 (474)
Q Consensus 254 ~~~~~~~~~~~v~~v~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~ 329 (474)
....+..|...|.+++|+| ++ .+++++.||.|++||++.... .......+...+.+++|+| ++.+|++++.
T Consensus 132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 206 (814)
T 3mkq_A 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (814)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC-----SEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----eeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence 7778889999999999999 66 899999999999999975543 1222234458899999999 9999999999
Q ss_pred CCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728 330 DGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 330 dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
||.|++||++++... ..+.+|...+ +++++++++|++++.||.|++||+.+++ .+..+..|...|.+++|+|++.
T Consensus 207 dg~i~~~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~ 283 (814)
T 3mkq_A 207 DLTIKIWDYQTKSCV-ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK--VEKTLNVGLERSWCIATHPTGR 283 (814)
T ss_dssp TSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS--EEEEECCSSSSEEEEEECTTCG
T ss_pred CCEEEEEECCCCcEE-EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEeecCCCcEEEEEEccCCC
Confidence 999999999887654 4556676666 4566789999999999999999999887 5678888999999999999986
Q ss_pred cccccceEEEEEecCCCcEEEEEccCC
Q 047728 408 SLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 408 ~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
. ++++++.|+.+.+|++...
T Consensus 284 ~-------~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 284 K-------NYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp G-------GEEEEEETTEEEEEECSCC
T ss_pred c-------eEEEEEeCCCEEEEEcCCC
Confidence 4 3344555677889987654
No 62
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.8e-36 Score=328.71 Aligned_cols=346 Identities=20% Similarity=0.250 Sum_probs=270.6
Q ss_pred CCCCCCCCCCCCCCcCccCCCC-CCCCCCCCCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeC--Ccccc
Q 047728 68 HNDSSSPFSKSPWSTHHVSVPT-PSNNDDGFSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKN--QREFS 142 (474)
Q Consensus 68 ~~~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~--~~~~~ 142 (474)
|...+..++++|......+... .....++......+..+.+|.+.|.+++++ +++|++|+.||.|+|||. ++.+.
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~ 693 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH 693 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 3345556677777665544322 223334455667888999999999999986 889999999999999995 46677
Q ss_pred ccccCccCEEEEEecC----CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728 143 GFKSNSGLVKAIVISN----EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218 (474)
Q Consensus 143 ~~~~h~~~V~~i~~~~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
.+.+|...|.+++|++ ..+++|+.||.|++||+.+++... .+.+
T Consensus 694 ~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~--------------------------------~~~~ 741 (1249)
T 3sfz_A 694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN--------------------------------TMFG 741 (1249)
T ss_dssp EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE--------------------------------EECC
T ss_pred EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh--------------------------------eecC
Confidence 8889999999999973 379999999999999998876432 2335
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee----------------------------------------
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV---------------------------------------- 258 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---------------------------------------- 258 (474)
|...|++++|+|++++|++++.||.|++||+.+++....+
T Consensus 742 h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v 821 (1249)
T 3sfz_A 742 HTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKV 821 (1249)
T ss_dssp CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEE
T ss_pred CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcE
Confidence 8888999999998888999999999999988765443322
Q ss_pred --------------e-ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC
Q 047728 259 --------------I-AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA 322 (474)
Q Consensus 259 --------------~-~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 322 (474)
. +|...|.+++|+|++ .+++++.||.|++||+.... ......+|...|.+++|+|+++
T Consensus 822 ~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~------~~~~~~~h~~~v~~v~~spdg~ 895 (1249)
T 3sfz_A 822 LLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL------KVADCRGHLSWVHGVMFSPDGS 895 (1249)
T ss_dssp EEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE------EEEEECCCSSCEEEEEECTTSS
T ss_pred EEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc------eeeecCCCccceEEEEECCCCC
Confidence 1 577889999999999 99999999999999987543 3456678888999999999999
Q ss_pred EEEEEcCCCcEEEeecCccc------------------------------------------------------------
Q 047728 323 IVYCGSSDGLVNFWERELNL------------------------------------------------------------ 342 (474)
Q Consensus 323 ~l~~~~~dg~i~v~d~~~~~------------------------------------------------------------ 342 (474)
+|++++.|+.|++||+....
T Consensus 896 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 975 (1249)
T 3sfz_A 896 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY 975 (1249)
T ss_dssp EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSE
T ss_pred EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCE
Confidence 99999999999999854210
Q ss_pred ------------------ccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEE
Q 047728 343 ------------------SHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAV 402 (474)
Q Consensus 343 ------------------~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~ 402 (474)
.......+|...+ +++++++++|++++.||.|++||+.+++. ..+..|...|.+++|
T Consensus 976 l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~v~~~~~ 1052 (1249)
T 3sfz_A 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY---VFLQAHQETVKDFRL 1052 (1249)
T ss_dssp EEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE---ECCBCCSSCEEEEEE
T ss_pred EEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce---EEEecCCCcEEEEEE
Confidence 0011122454444 55667899999999999999999998863 356789999999999
Q ss_pred eeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 403 EKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 403 ~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
++++. +++++.||.|++||+.++ .....+.+|...|.++ +|+|||++++++|
T Consensus 1053 ~~~~~---------l~~~~~dg~v~vwd~~~~-------~~~~~~~~~~~~v~~~----~~s~d~~~l~s~s 1104 (1249)
T 3sfz_A 1053 LQDSR---------LLSWSFDGTVKVWNVITG-------RIERDFTCHQGTVLSC----AISSDATKFSSTS 1104 (1249)
T ss_dssp CSSSE---------EEEEESSSEEEEEETTTT-------CCCEEEECCSSCCCCE----EECSSSSSCEEEC
T ss_pred cCCCc---------EEEEECCCcEEEEECCCC-------ceeEEEcccCCcEEEE----EECCCCCEEEEEc
Confidence 99764 889999999999999887 3455678899999988 6678888887754
No 63
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.2e-35 Score=284.05 Aligned_cols=277 Identities=19% Similarity=0.301 Sum_probs=226.5
Q ss_pred EEEEEEc-CCEEEEeeCCCcEEEEeCC--ccccc--cccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728 113 IYSLAAA-GDLLYTGSDSKNIRVWKNQ--REFSG--FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKR 185 (474)
Q Consensus 113 i~~~~~~-~~~l~tgs~dg~v~vwd~~--~~~~~--~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 185 (474)
++.|+++ +++||+|. |++|+|||.. +.... +.+|...|++|+|+ +++|++|+.||+|++||+.+++...
T Consensus 108 ~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~--- 183 (420)
T 4gga_A 108 LNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR--- 183 (420)
T ss_dssp CBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---
T ss_pred ceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE---
Confidence 5667887 67888876 8999999954 33333 45678899999998 6799999999999999999876432
Q ss_pred ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc-ceeeeeeecCcc
Q 047728 186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY-KCLESVIAHDDA 264 (474)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~ 264 (474)
.+.+|...+.+++++ +.+|++|+.|+.+++||.... ..+..+.+|...
T Consensus 184 -----------------------------~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~ 232 (420)
T 4gga_A 184 -----------------------------NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 232 (420)
T ss_dssp -----------------------------EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred -----------------------------EEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccc
Confidence 234589999998875 679999999999999998764 456778899999
Q ss_pred eeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEE--EcCCCcEEEeecCc
Q 047728 265 VNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYC--GSSDGLVNFWEREL 340 (474)
Q Consensus 265 v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~--~~~dg~i~v~d~~~ 340 (474)
+..+.+.+++ .+++++.|+.+++|+....... .........+...|.+++|+|.+ .++++ |+.|+.|++||+.+
T Consensus 233 ~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~--~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t 310 (420)
T 4gga_A 233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 310 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCCSSC--SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred eeeeeecCCCCeeeeeeccccceEEeecccccc--ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc
Confidence 9999999999 9999999999999998765432 12345567788999999999955 45554 46899999999998
Q ss_pred ccccceeeeecceeeEEEEecCCEEEEEe--CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEE
Q 047728 341 NLSHGGVLRGHKLAILCLVTAGNLVFSGS--ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY 418 (474)
Q Consensus 341 ~~~~~~~~~~~~~~v~~~~~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~ 418 (474)
+................++++++.+++++ .|+.|+|||+.+++ ++..+.+|.+.|++++|+|++. +|+
T Consensus 311 ~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~--~v~~l~gH~~~V~~l~~spdg~--------~l~ 380 (420)
T 4gga_A 311 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGA--------TVA 380 (420)
T ss_dssp TEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSS--------CEE
T ss_pred cccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCC--------EEE
Confidence 87765554444445566778888888765 79999999999888 5788999999999999999999 899
Q ss_pred EecCCCcEEEEEccCCCC
Q 047728 419 SGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 419 s~s~Dg~i~vw~~~~~~~ 436 (474)
||+.|++|+|||+.+..+
T Consensus 381 S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 381 SAAADETLRLWRCFELDP 398 (420)
T ss_dssp EEETTTEEEEECCSCSSC
T ss_pred EEecCCeEEEEECCCCCc
Confidence 999999999999987643
No 64
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.4e-36 Score=284.94 Aligned_cols=283 Identities=14% Similarity=0.196 Sum_probs=230.3
Q ss_pred ccccCccCEEEEEecC------CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728 143 GFKSNSGLVKAIVISN------EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW 216 (474)
Q Consensus 143 ~~~~h~~~V~~i~~~~------~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (474)
...+|...|.+++|++ ..+++++.++.|++|++.+++......... .
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~---------------------------~ 65 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYV---------------------------D 65 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEE---------------------------C
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecc---------------------------c
Confidence 3457999999999983 457777778899999998765543221110 0
Q ss_pred eeccCCeeEEEecCC----CCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecC-CC-eEEEeeCCCcEEEEEc
Q 047728 217 IKHFDAISSLSMSED----QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF-DG-LVFTGSADGTVKVWRR 290 (474)
Q Consensus 217 ~~h~~~V~~l~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~-~l~~~~~dg~i~iwd~ 290 (474)
..|...|.+++|+|+ +.+|++|+.|+.|++||+.+++.+..+..|...|.+++|+| ++ .|++++.||.|++||+
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 66 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 127788999999998 67999999999999999999999999999999999999999 66 8999999999999999
Q ss_pred ccCCCceeeeeeeee---ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccce---------------------
Q 047728 291 ELQGKGTKHFFSQTL---LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG--------------------- 346 (474)
Q Consensus 291 ~~~~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~--------------------- 346 (474)
+.... ...+ ..|...|.+++|+|++++|++++.|+.|++||+++......
T Consensus 146 ~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T 3k26_A 146 QTDTL------VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219 (366)
T ss_dssp TTTEE------EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred ecCeE------EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence 75432 2333 57899999999999999999999999999999987643321
Q ss_pred ------eeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCce------------EEEEeecCCccceEEEEEeeC--C
Q 047728 347 ------VLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEH------------ICLSMLTGHSGPVKCLAVEKD--D 406 (474)
Q Consensus 347 ------~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~------------~~~~~~~~h~~~v~~l~~~~~--~ 406 (474)
....|...+.++.+++++|++++.|+.|++||+.+.+. ..+..+..|...|++++|+|+ +
T Consensus 220 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 299 (366)
T 3k26_A 220 HFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ 299 (366)
T ss_dssp CCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS
T ss_pred ccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC
Confidence 11237788888888899999999999999999987643 346788899999999999999 8
Q ss_pred ccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCC--CCCCCccccCCCCCcCCceeecc
Q 047728 407 ESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH--GVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 407 ~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
. +|++|+.||.|++||+.++.... .....+.+| ...|.++ +|+|||++|+++
T Consensus 300 ~--------~l~~~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~v~~~----~~s~~~~~l~s~ 353 (366)
T 3k26_A 300 K--------MLALGNQVGKLYVWDLEVEDPHK---AKCTTLTHHKCGAAIRQT----SFSRDSSILIAV 353 (366)
T ss_dssp S--------EEEEECTTSCEEEEECCSSSGGG---CEEEEECCTTCCSCEEEE----EECTTSSEEEEE
T ss_pred c--------EEEEEecCCcEEEEECCCCCCcc---ccceEEcccccCCceEEE----EeCCCCCeEEEE
Confidence 8 99999999999999998874321 233356666 6888888 667789888875
No 65
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.1e-34 Score=268.28 Aligned_cols=246 Identities=20% Similarity=0.235 Sum_probs=200.9
Q ss_pred eeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC----ccccccccCccCEEEEEec----CCEEEEEeCCCeEEE
Q 047728 103 IGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ----REFSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIRV 172 (474)
Q Consensus 103 ~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~v 172 (474)
+..+.+|++.|++++|+ |++||+|+.|++|+|||.. +.+..+.+|.+.|.+++|+ +++|++|+.|++|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 34577899999999976 8899999999999999964 4567889999999999995 579999999999999
Q ss_pred EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC--CCEEEEEECCCcEEEEEcC
Q 047728 173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED--QNLLYSASWDKTFKVWRTS 250 (474)
Q Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~~ 250 (474)
||+.+++.... ..+.+|...|.+++|+|+ +.+|++++.|++|++||++
T Consensus 82 Wd~~~~~~~~~------------------------------~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~ 131 (297)
T 2pm7_B 82 WKEENGRWSQI------------------------------AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFK 131 (297)
T ss_dssp EEBSSSCBCCC------------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBC
T ss_pred EEcCCCceEEE------------------------------EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEec
Confidence 99987642211 123458999999999997 8899999999999999998
Q ss_pred Ccce--eeeeeecCcceeEEEecCC-------------C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEE
Q 047728 251 DYKC--LESVIAHDDAVNSIVAGFD-------------G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTA 314 (474)
Q Consensus 251 ~~~~--~~~~~~~~~~v~~v~~~~~-------------~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 314 (474)
++.. ...+.+|...|.+++|+|+ + .|++|+.|+.|++||++.... .......+.+|...|.+
T Consensus 132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~--~~~~~~~l~~H~~~V~~ 209 (297)
T 2pm7_B 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWVRD 209 (297)
T ss_dssp SSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCEEE
T ss_pred CCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc--eEEEEEEecCCCCceEE
Confidence 7632 4567789999999999996 3 899999999999999985432 12234567789999999
Q ss_pred EEEcCCC---CEEEEEcCCCcEEEeecCccccc--ceee--eecceee--EEEEecCCEEEEEeCCCcEEEEECC
Q 047728 315 LAISPDA---AIVYCGSSDGLVNFWERELNLSH--GGVL--RGHKLAI--LCLVTAGNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 315 l~~~~~~---~~l~~~~~dg~i~v~d~~~~~~~--~~~~--~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~ 380 (474)
++|+|++ .+|++++.|++|++||++..... ...+ ..|...+ +++++++++|++++.|+.|+||+..
T Consensus 210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9999984 89999999999999998764311 1122 3455555 5667789999999999999999986
No 66
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7e-35 Score=283.07 Aligned_cols=276 Identities=18% Similarity=0.250 Sum_probs=221.9
Q ss_pred EEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCc
Q 047728 116 LAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPT 191 (474)
Q Consensus 116 ~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 191 (474)
+.+++++|++|+.||.|++||.. +....+.+|...|.+++|+ +++|++++.|+.|++||+.+++...
T Consensus 105 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--------- 175 (420)
T 3vl1_A 105 AKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR--------- 175 (420)
T ss_dssp ECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE---------
T ss_pred EecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce---------
Confidence 34569999999999999999954 4455667999999999998 6699999999999999998876532
Q ss_pred cceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeec---C------
Q 047728 192 FKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH---D------ 262 (474)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~------ 262 (474)
.+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..| .
T Consensus 176 -----------------------~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~ 232 (420)
T 3vl1_A 176 -----------------------TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSI 232 (420)
T ss_dssp -----------------------EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEE
T ss_pred -----------------------EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEE
Confidence 23459999999999999999999999999999999999998888753 2
Q ss_pred ---------------cceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC-EEE
Q 047728 263 ---------------DAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA-IVY 325 (474)
Q Consensus 263 ---------------~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~ 325 (474)
..+.+++|+|++ .+++++.||.|++||++.... .......|...|.+++|+|++. +|+
T Consensus 233 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~ 307 (420)
T 3vl1_A 233 ALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ-----TIQLPSKFTCSCNSLTVDGNNANYIY 307 (420)
T ss_dssp EEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE-----EEEECCTTSSCEEEEEECSSCTTEEE
T ss_pred EEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce-----eEEcccccCCCceeEEEeCCCCCEEE
Confidence 444555567888 899999999999999986543 2333446788999999999998 999
Q ss_pred EEcCCCcEEEeecCcccccceeeee-cceeeEEE-EecCCEEEEEeCCCcEEEEECCCCceE-------EEEeecCCccc
Q 047728 326 CGSSDGLVNFWERELNLSHGGVLRG-HKLAILCL-VTAGNLVFSGSADMSICIWRRKENEHI-------CLSMLTGHSGP 396 (474)
Q Consensus 326 ~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~-~~~~~~l~sgs~dg~i~iwd~~~~~~~-------~~~~~~~h~~~ 396 (474)
+++.||.|++||+++.......+.. |...+.++ .+++++|++++.|+.|++||+...... ....+..|.+.
T Consensus 308 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (420)
T 3vl1_A 308 AGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDA 387 (420)
T ss_dssp EEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCC
T ss_pred EEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcc
Confidence 9999999999999987664455555 55556544 347889999999999999998763110 12345678899
Q ss_pred eEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 397 VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 397 v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
|.+++|+|++... . .|++.+.+|.+.+|++++
T Consensus 388 v~~~~~s~~~~~~----g-~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 388 VSQFCYVSDDESN----G-EVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCEEEEECCSSSS----C-EEEEEETTTEEEEEESCC
T ss_pred eEEEEEccCCCCc----c-eEEEEcCCceEEEEeccC
Confidence 9999999998610 0 255666789999999865
No 67
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.3e-35 Score=275.39 Aligned_cols=285 Identities=20% Similarity=0.299 Sum_probs=226.9
Q ss_pred ccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 141 FSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 141 ~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
..++++|.+.|++|+|+ +++|+||+.||+|+|||+...+....... ..+.
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~---------------------------~~l~ 83 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ---------------------------RALR 83 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEE---------------------------EEEC
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceee---------------------------EEEe
Confidence 44688999999999998 46899999999999999987654322211 2345
Q ss_pred eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
+|...|.+++|+|++++|++++.|+.|++|+............+...+..+.+.+++ .+++++.|+.+++||+.....
T Consensus 84 ~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~- 162 (340)
T 4aow_A 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK- 162 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-
T ss_pred CCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce-
Confidence 699999999999999999999999999999999999888888888999999999988 899999999999999864322
Q ss_pred eeeeeeeeeecccccEEEEEEcCCC--CEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--EEecCCEEEEEeCCC
Q 047728 297 TKHFFSQTLLKQECAVTALAISPDA--AIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAGNLVFSGSADM 372 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sgs~dg 372 (474)
.......|...+..++|++++ .++++++.|+.|++||+++.... ..+.+|...|.+ +++++++|++|+.|+
T Consensus 163 ----~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg 237 (340)
T 4aow_A 163 ----YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK-TNHIGHTGYLNTVTVSPDGSLCASGGKDG 237 (340)
T ss_dssp ----EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred ----EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee-eEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 344556788999999999854 57889999999999999987654 456678777755 456899999999999
Q ss_pred cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCC--CCcccccccCC
Q 047728 373 SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLV--STTQQHPLEGH 450 (474)
Q Consensus 373 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~--~~~~~~~~~~~ 450 (474)
.|++||+++.+ .+..+. +...|.+++|+|++. +++++.|+.|++||+........ .........+|
T Consensus 238 ~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~---------~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h 305 (340)
T 4aow_A 238 QAMLWDLNEGK--HLYTLD-GGDIINALCFSPNRY---------WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE 305 (340)
T ss_dssp EEEEEETTTTE--EEEEEE-CSSCEEEEEECSSSS---------EEEEEETTEEEEEETTTTEEEEEECCC-------CC
T ss_pred eEEEEEeccCc--eeeeec-CCceEEeeecCCCCc---------eeeccCCCEEEEEECCCCeEEEeccccceeeeccCC
Confidence 99999999887 345555 446899999999876 56677899999999986532211 11222345578
Q ss_pred CCCCCccccCCCCCcCCceeeccC
Q 047728 451 GVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 451 ~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
...|+++ +|+|||++|+++|
T Consensus 306 ~~~v~~l----~~s~dg~~l~sgs 325 (340)
T 4aow_A 306 PPQCTSL----AWSADGQTLFAGY 325 (340)
T ss_dssp CCCEEEE----EECTTSSEEEEEE
T ss_pred CCCEEEE----EECCCCCEEEEEe
Confidence 8889988 6788899888763
No 68
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.9e-35 Score=268.78 Aligned_cols=250 Identities=16% Similarity=0.265 Sum_probs=203.9
Q ss_pred cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728 142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH 219 (474)
Q Consensus 142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 219 (474)
..+.+|.+.|.+++|+ +++|++|+.|++|+||++....... ...+.+|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~------------------------------~~~l~gH 52 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKL------------------------------IDTLTGH 52 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCC------------------------------CEEECCC
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEE------------------------------EEEEccc
Confidence 4567899999999998 7799999999999999997542111 1234569
Q ss_pred cCCeeEEEecC--CCCEEEEEECCCcEEEEEcCCcc--eeeeeeecCcceeEEEecCC--C-eEEEeeCCCcEEEEEccc
Q 047728 220 FDAISSLSMSE--DQNLLYSASWDKTFKVWRTSDYK--CLESVIAHDDAVNSIVAGFD--G-LVFTGSADGTVKVWRREL 292 (474)
Q Consensus 220 ~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~--~-~l~~~~~dg~i~iwd~~~ 292 (474)
..+|.+++|++ ++++|++|+.|++|++||+++++ .+..+..|...|.+++|+|+ + +|++++.|+.|++||++.
T Consensus 53 ~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~ 132 (297)
T 2pm7_B 53 EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE 132 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence 99999999986 48999999999999999998874 56667789999999999997 5 899999999999999976
Q ss_pred CCCceeeeeeeeeecccccEEEEEEcCC-------------CCEEEEEcCCCcEEEeecCcccc---cceeeeecceeeE
Q 047728 293 QGKGTKHFFSQTLLKQECAVTALAISPD-------------AAIVYCGSSDGLVNFWERELNLS---HGGVLRGHKLAIL 356 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~-------------~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~~v~ 356 (474)
.... ....+..|...|.+++|+|+ +++|++|+.|+.|++||++.... ....+.+|...|.
T Consensus 133 ~~~~----~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~ 208 (297)
T 2pm7_B 133 NGTT----SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (297)
T ss_dssp SSCB----CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred CCce----eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceE
Confidence 4321 12456688999999999996 57999999999999999976542 3345678888776
Q ss_pred EEE--ec---CCEEEEEeCCCcEEEEECCCCce-EEEEee--cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEE
Q 047728 357 CLV--TA---GNLVFSGSADMSICIWRRKENEH-ICLSML--TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM 428 (474)
Q Consensus 357 ~~~--~~---~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v 428 (474)
++. |+ +.+|++|+.|++|+|||++.... .....+ ..|...|.+++|+|+++ +|++++.|+.|+|
T Consensus 209 ~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--------~las~~~D~~v~l 280 (297)
T 2pm7_B 209 DVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN--------VLALSGGDNKVTL 280 (297)
T ss_dssp EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC--------CEEEEETTSCEEE
T ss_pred EEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC--------EEEEEcCCCcEEE
Confidence 655 45 37999999999999999976431 112233 57889999999999999 8999999999999
Q ss_pred EEccC
Q 047728 429 WRVSE 433 (474)
Q Consensus 429 w~~~~ 433 (474)
|+...
T Consensus 281 w~~~~ 285 (297)
T 2pm7_B 281 WKENL 285 (297)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 99864
No 69
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-35 Score=310.86 Aligned_cols=351 Identities=8% Similarity=0.062 Sum_probs=239.9
Q ss_pred CCcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCccc-------------cccccCccCEEEEEecC---
Q 047728 97 FSPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREF-------------SGFKSNSGLVKAIVISN--- 158 (474)
Q Consensus 97 ~~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~-------------~~~~~h~~~V~~i~~~~--- 158 (474)
.....++..+. |.+.|++++++ +++|++|+.||+|++||..... ..+.+|.+.|.+++|++
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~ 164 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI 164 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred CCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence 33445566664 77889999986 8899999999999999965322 34577999999999985
Q ss_pred CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE
Q 047728 159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA 238 (474)
Q Consensus 159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 238 (474)
..|++|+.||.| +||+.+++..........+... .... .......|...|++++|+|++++|++|
T Consensus 165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~-------~~~~-------~~~~~~~h~~~V~~v~fspdg~~lasg 229 (902)
T 2oaj_A 165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAP-------GGDF-------SEKTNEKRTPKVIQSLYHPNSLHIITI 229 (902)
T ss_dssp EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCC-------CSTT-------CCCTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCC-------Cccc-------ccccccccCCCeEEEEEcCCCCEEEEE
Confidence 489999999999 9999987654332211000000 0000 001223477899999999999999999
Q ss_pred ECCCcEEEEEcCCcceeee--e---ee-------------cCcceeEEEec----CCC--eEEEeeCC-----CcEEEEE
Q 047728 239 SWDKTFKVWRTSDYKCLES--V---IA-------------HDDAVNSIVAG----FDG--LVFTGSAD-----GTVKVWR 289 (474)
Q Consensus 239 s~dg~i~iwd~~~~~~~~~--~---~~-------------~~~~v~~v~~~----~~~--~l~~~~~d-----g~i~iwd 289 (474)
+.|++|++||+++++++.. + .. |...|.+++|+ |++ .+++|+.| ..+++|+
T Consensus 230 s~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~ 309 (902)
T 2oaj_A 230 HEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID 309 (902)
T ss_dssp ETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred ECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence 9999999999999887653 2 11 34578999994 443 56666554 2677776
Q ss_pred cccC-----------------------------CC-----------------------------ceeee--------ee-
Q 047728 290 RELQ-----------------------------GK-----------------------------GTKHF--------FS- 302 (474)
Q Consensus 290 ~~~~-----------------------------~~-----------------------------~~~~~--------~~- 302 (474)
+... .. ..... ..
T Consensus 310 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~ 389 (902)
T 2oaj_A 310 LGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDK 389 (902)
T ss_dssp EEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECC
T ss_pred cCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccc
Confidence 3100 00 00000 00
Q ss_pred -----eeeecccccEEE----------------------------------EEEcCCCCEEEEEcCCCcEEEeecCcccc
Q 047728 303 -----QTLLKQECAVTA----------------------------------LAISPDAAIVYCGSSDGLVNFWERELNLS 343 (474)
Q Consensus 303 -----~~~~~~~~~v~~----------------------------------l~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 343 (474)
..+..|...|++ ++|+|++++|++|+.|++|++||+..+..
T Consensus 390 ~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~ 469 (902)
T 2oaj_A 390 ASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDI 469 (902)
T ss_dssp GGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTT
T ss_pred cccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccc
Confidence 000112233444 44578899999999999999999987742
Q ss_pred cc-eee---------eecceee--EEEEecCCEEEEEeCCCcEEEEECCCCce---------------------------
Q 047728 344 HG-GVL---------RGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEH--------------------------- 384 (474)
Q Consensus 344 ~~-~~~---------~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~--------------------------- 384 (474)
.. ..+ .+|...| ++|+|++++||+|+.||+|+|||+.+++.
T Consensus 470 ~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (902)
T 2oaj_A 470 QDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGV 549 (902)
T ss_dssp TTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCS
T ss_pred cCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccc
Confidence 21 111 1565555 66777899999999999999999976521
Q ss_pred ----------------EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCccccccc
Q 047728 385 ----------------ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLE 448 (474)
Q Consensus 385 ----------------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~ 448 (474)
.++..+.+|.++|++|+|+|++ +||+|+.|++|+|||+.++... .......+.
T Consensus 550 ~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG---------~lAsgs~D~tv~lwd~~~~~~~--~~~~~~~~~ 618 (902)
T 2oaj_A 550 LVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG---------FVGIAYAAGSLMLIDRRGPAII--YMENIREIS 618 (902)
T ss_dssp EEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS---------EEEEEETTSEEEEEETTTTEEE--EEEEGGGTC
T ss_pred cccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc---------EEEEEeCCCcEEEEECCCCeEE--EEeehhHhc
Confidence 2467788999999999999998 4999999999999998765321 001123454
Q ss_pred -CCCCCCCccccC-CCCCcCC---ceeeccC
Q 047728 449 -GHGVAPNSLPYA-PSFSSQG---RICQKRS 474 (474)
Q Consensus 449 -~~~~~v~~l~~~-p~~s~Dg---~~l~~~s 474 (474)
+|...|++++|+ ...+||| ++|+++|
T Consensus 619 ~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs 649 (902)
T 2oaj_A 619 GAQSACVTCIEFVIMEYGDDGYSSILMVCGT 649 (902)
T ss_dssp SSCCCCEEEEEEEEEECTTSSSEEEEEEEEE
T ss_pred cccccceEEEEEEEEecCCCCCcceEEEEEe
Confidence 899999999544 1122775 7887764
No 70
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.2e-34 Score=293.38 Aligned_cols=339 Identities=13% Similarity=0.146 Sum_probs=248.5
Q ss_pred eecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC------ccccccccCccC-EEEEEecC----CEEEEEeCCCeEEEEe
Q 047728 108 REEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ------REFSGFKSNSGL-VKAIVISN----EKIFSGHQDGKIRVWK 174 (474)
Q Consensus 108 ~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~------~~~~~~~~h~~~-V~~i~~~~----~~l~s~~~dg~i~vwd 174 (474)
.|.+.|.+++++ +++|++++ ++.|+|||.. +....+.+|... |.+++|++ ++|++++.||.|++||
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 567788876665 88999998 7899999954 467778899999 99999976 6899999999999999
Q ss_pred cCCC------Ccceeeeecc----------cCccceeeeeecCCC--CeEEEee--eccceeeeccCCeeEEEecCCCC-
Q 047728 175 VSSK------DASIHKRVGT----------LPTFKDFIKCSMKPS--NYIEVRR--HRNGLWIKHFDAISSLSMSEDQN- 233 (474)
Q Consensus 175 ~~~~------~~~~~~~~~~----------~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~h~~~V~~l~~~~~~~- 233 (474)
+.++ +......... .+....++....+.. ..+.++. .....+.+|...|.+++|+|++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~ 174 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM 174 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCc
Confidence 9754 1111111111 111111111111111 1222222 12245568999999999999987
Q ss_pred EEEEEECCCcEEEEEcCCcceeeeeeecCc---ceeEEEecCC-C-eEEEeeCCCcEEEEEcccCCCceeeeeeeee-e-
Q 047728 234 LLYSASWDKTFKVWRTSDYKCLESVIAHDD---AVNSIVAGFD-G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL-L- 306 (474)
Q Consensus 234 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~v~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~- 306 (474)
+|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+ + .+++++.||.|++||++.... ...+ .
T Consensus 175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~ 248 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF------LKYIEDD 248 (615)
T ss_dssp EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE------EEECCBT
T ss_pred EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE------eEEeccc
Confidence 899999999999999999999999999999 9999999999 7 899999999999999976542 3334 4
Q ss_pred --cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee------------------------------------
Q 047728 307 --KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL------------------------------------ 348 (474)
Q Consensus 307 --~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~------------------------------------ 348 (474)
.|...|.+++|+ ++.+|++++.|+.|++||++++.......
T Consensus 249 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 249 QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECC
Confidence 788999999999 99999999999999999987553221111
Q ss_pred --------eeccee---------------------------------eEEEE----------------------------
Q 047728 349 --------RGHKLA---------------------------------ILCLV---------------------------- 359 (474)
Q Consensus 349 --------~~~~~~---------------------------------v~~~~---------------------------- 359 (474)
.+|... +.++.
T Consensus 328 ~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~ 407 (615)
T 1pgu_A 328 HDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGS 407 (615)
T ss_dssp EEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSS
T ss_pred CCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccC
Confidence 111111 11111
Q ss_pred ----------------------------------------------ecCCEEEEEeC-CCcEEEEECCCCceEEEEeecC
Q 047728 360 ----------------------------------------------TAGNLVFSGSA-DMSICIWRRKENEHICLSMLTG 392 (474)
Q Consensus 360 ----------------------------------------------~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~ 392 (474)
+.+++|++++. |+.|++||+.+++... ..+.+
T Consensus 408 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~ 486 (615)
T 1pgu_A 408 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTP 486 (615)
T ss_dssp CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE-ECSSC
T ss_pred CceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc-cccCC
Confidence 11445555665 6666666666554221 56778
Q ss_pred CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccC-CCCCCCccccCCCCCc------
Q 047728 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEG-HGVAPNSLPYAPSFSS------ 465 (474)
Q Consensus 393 h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~p~~s~------ 465 (474)
|...|++++|+|+++ +|++++.||.|++|++.++ .....+.+ |...|+++ +|+|
T Consensus 487 ~~~~v~~~~~s~~g~--------~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~h~~~v~~~----~~sp~~~~~~ 547 (615)
T 1pgu_A 487 LRAKPSYISISPSET--------YIAAGDVMGKILLYDLQSR-------EVKTSRWAFRTSKINAI----SWKPAEKGAN 547 (615)
T ss_dssp CSSCEEEEEECTTSS--------EEEEEETTSCEEEEETTTT-------EEEECCSCCCSSCEEEE----EECCCC----
T ss_pred ccCceEEEEECCCCC--------EEEEcCCCCeEEEeeCCCC-------cceeEeecCCCCceeEE----EEcCcccccc
Confidence 999999999999999 9999999999999999887 44455666 89999999 5556
Q ss_pred ----CCceeeccC
Q 047728 466 ----QGRICQKRS 474 (474)
Q Consensus 466 ----Dg~~l~~~s 474 (474)
||++|++++
T Consensus 548 ~~~~~~~~l~~~~ 560 (615)
T 1pgu_A 548 EEEIEEDLVATGS 560 (615)
T ss_dssp --CCSCCEEEEEE
T ss_pred ccccCCCEEEEEc
Confidence 888888753
No 71
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.4e-35 Score=284.04 Aligned_cols=277 Identities=16% Similarity=0.180 Sum_probs=221.8
Q ss_pred ccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc
Q 047728 141 FSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF 220 (474)
Q Consensus 141 ~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 220 (474)
...+.+|.+.|.+++|++++|++|+.||.|++|++...+...... ....+.+|.
T Consensus 9 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--------------------------~~~~~~~h~ 62 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKD--------------------------KSYSHFVHK 62 (397)
T ss_dssp EEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGG--------------------------GEEEEECCT
T ss_pred hhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCC--------------------------cceEEecCC
Confidence 445778999999999999999999999999999999876211000 002334599
Q ss_pred CCeeEEEecCC----C---CEEEEEECCCcEEEEEcCCcce-----eeeeeec-----CcceeEEEec----CCC-e-EE
Q 047728 221 DAISSLSMSED----Q---NLLYSASWDKTFKVWRTSDYKC-----LESVIAH-----DDAVNSIVAG----FDG-L-VF 277 (474)
Q Consensus 221 ~~V~~l~~~~~----~---~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~v~~~----~~~-~-l~ 277 (474)
..|.+++|+|+ + ++|++++.|+.|++||+.+++. +..+..| ...|.+++|+ |++ . |+
T Consensus 63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 142 (397)
T 1sq9_A 63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLV 142 (397)
T ss_dssp TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEE
T ss_pred CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEE
Confidence 99999999999 9 9999999999999999998887 8888888 5899999999 888 7 99
Q ss_pred EeeCCCcEEEEEccc------CCCceeeeeeeee-------ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc
Q 047728 278 TGSADGTVKVWRREL------QGKGTKHFFSQTL-------LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH 344 (474)
Q Consensus 278 ~~~~dg~i~iwd~~~------~~~~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 344 (474)
+++.||.|++||++. ..... ......+ ..|...|.+++|+|++ +|++++.|+.|++||+++....
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~ 220 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPL 220 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEE
T ss_pred EEeCCCcEEEEeCCccccccccceee-ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCcee
Confidence 999999999999986 33311 0011133 4578899999999999 9999999999999999887554
Q ss_pred ceeeee---c---ceee--EEEEecCCEEEEEeCC---CcEEEEECCCCceEEEEeecC-------------CccceEEE
Q 047728 345 GGVLRG---H---KLAI--LCLVTAGNLVFSGSAD---MSICIWRRKENEHICLSMLTG-------------HSGPVKCL 400 (474)
Q Consensus 345 ~~~~~~---~---~~~v--~~~~~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~~~-------------h~~~v~~l 400 (474)
..+.. | ...+ +++++++++|++++.| +.|++||+.+++ .+..+.+ |...|.++
T Consensus 221 -~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 297 (397)
T 1sq9_A 221 -YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE--RIGSLSVPTHSSQASLGEFAHSSWVMSL 297 (397)
T ss_dssp -EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC--EEEEECBC--------CCBSBSSCEEEE
T ss_pred -EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc--ccceeccCcccccccccccccCCcEEEE
Confidence 34444 6 5555 4555689999999999 999999999887 4567777 99999999
Q ss_pred EEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCccccccc------CC---------------CCCCCcccc
Q 047728 401 AVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLE------GH---------------GVAPNSLPY 459 (474)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~------~~---------------~~~v~~l~~ 459 (474)
+|+|++. +|++++.||.|++||+.+++ ....+. +| ...|.++
T Consensus 298 ~~~~~~~--------~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~-- 360 (397)
T 1sq9_A 298 SFNDSGE--------TLCSAGWDGKLRFWDVKTKE-------RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV-- 360 (397)
T ss_dssp EECSSSS--------EEEEEETTSEEEEEETTTTE-------EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE--
T ss_pred EECCCCC--------EEEEEeCCCeEEEEEcCCCc-------eeEEEecccCcccchhhhhccccccccccCCceeEE--
Confidence 9999999 99999999999999998873 333444 45 8888888
Q ss_pred CCCCCcCC
Q 047728 460 APSFSSQG 467 (474)
Q Consensus 460 ~p~~s~Dg 467 (474)
+|+|||
T Consensus 361 --~~~~~g 366 (397)
T 1sq9_A 361 --KFLKKG 366 (397)
T ss_dssp --EEECTT
T ss_pred --Eecccc
Confidence 556676
No 72
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.2e-34 Score=264.62 Aligned_cols=276 Identities=18% Similarity=0.281 Sum_probs=223.0
Q ss_pred EEEEEEc-CCEEEEeeCCCcEEEEeCC--cccccc--ccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728 113 IYSLAAA-GDLLYTGSDSKNIRVWKNQ--REFSGF--KSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKR 185 (474)
Q Consensus 113 i~~~~~~-~~~l~tgs~dg~v~vwd~~--~~~~~~--~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 185 (474)
.++|+++ +++||+|. |++|+|||.. +.+..+ .+|...|.+++|+ +++|++|+.||+|++|++++++...
T Consensus 28 ~~~l~WS~~~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~--- 103 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR--- 103 (318)
T ss_dssp CBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE---
T ss_pred ceEEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE---
Confidence 3567777 55777775 8999999954 444444 4688899999998 6799999999999999999876542
Q ss_pred ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc-ceeeeeeecCcc
Q 047728 186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY-KCLESVIAHDDA 264 (474)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~ 264 (474)
.+.+|...+.++.+ ++..+++++.++.+++|+.... ..+..+.+|...
T Consensus 104 -----------------------------~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (318)
T 4ggc_A 104 -----------------------------NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 152 (318)
T ss_dssp -----------------------------EEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred -----------------------------EecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCc
Confidence 23448888877655 5679999999999999998865 456677889999
Q ss_pred eeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCE---EEEEcCCCcEEEeecCc
Q 047728 265 VNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAI---VYCGSSDGLVNFWEREL 340 (474)
Q Consensus 265 v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~---l~~~~~dg~i~v~d~~~ 340 (474)
+..+.+.+++ .+++++.|+.|++||++...... ........+...|.+++++|++.. +++++.++.|++||.+.
T Consensus 153 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~ 230 (318)
T 4ggc_A 153 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW--VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 230 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBS--CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT
T ss_pred eEEEEEcCCCCEEEEEecCcceeEEECCCCcccc--cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc
Confidence 9999999999 99999999999999998654321 223455667888999999996653 34677889999999988
Q ss_pred ccccceeeeecceeeEEEEecCCEEEEEe--CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEE
Q 047728 341 NLSHGGVLRGHKLAILCLVTAGNLVFSGS--ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY 418 (474)
Q Consensus 341 ~~~~~~~~~~~~~~v~~~~~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~ 418 (474)
................++.++++.+++++ .|+.|++||+++++ ++..+.+|.+.|++++|+|++. +|+
T Consensus 231 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~--~~~~l~gH~~~V~~l~~spdg~--------~l~ 300 (318)
T 4ggc_A 231 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGA--------TVA 300 (318)
T ss_dssp CCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSS--------CEE
T ss_pred ccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCC--------EEE
Confidence 77665555555556677888888877655 79999999999888 5778999999999999999999 899
Q ss_pred EecCCCcEEEEEccCCC
Q 047728 419 SGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 419 s~s~Dg~i~vw~~~~~~ 435 (474)
||+.||+|+|||+.+..
T Consensus 301 S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 301 SAAADETLRLWRCFELD 317 (318)
T ss_dssp EEETTTEEEEECCSCCC
T ss_pred EEecCCeEEEEECCCCC
Confidence 99999999999997653
No 73
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-35 Score=281.88 Aligned_cols=290 Identities=12% Similarity=0.140 Sum_probs=233.7
Q ss_pred ecCcEEEEEEc--CCEEEEeeCCCcEEEEeC-CccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCccee
Q 047728 109 EEGHIYSLAAA--GDLLYTGSDSKNIRVWKN-QREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIH 183 (474)
Q Consensus 109 h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~-~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~ 183 (474)
|.+.|.+++++ +++|++|+.||.|++||. .+.+..+..|...|.+++|+ +++|++++.||.|++||+.+++....
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence 68899999987 789999999999999994 35667788899999999998 67899999999999999988765433
Q ss_pred eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCc
Q 047728 184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD 263 (474)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 263 (474)
......... . ............+.+++|++++ .+++++.|+.|++||+.+++.+..+..|..
T Consensus 187 ~~~~~~~~~------------~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 248 (425)
T 1r5m_A 187 FELKETGGS------------S-----INAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHG 248 (425)
T ss_dssp ECCC--------------------------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSS
T ss_pred eeccccCcc------------c-----eeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCC
Confidence 221110000 0 0000011223338899999874 688999999999999999999999999999
Q ss_pred ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc
Q 047728 264 AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL 342 (474)
Q Consensus 264 ~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~ 342 (474)
.|.+++|+|++ .|++++.|+.|++||++.... ...+..|...|.+++|+|++ ++++++.|+.|++||+++..
T Consensus 249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS------QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT 321 (425)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEECSSSBSC------SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc------ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc
Confidence 99999999999 999999999999999886543 44556788999999999999 99999999999999998776
Q ss_pred ccceeeeecceeeE--EEEecCCEEEEEeCCCcEEEEECCCCce------------------EEEEeecCCcc--ceEEE
Q 047728 343 SHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEH------------------ICLSMLTGHSG--PVKCL 400 (474)
Q Consensus 343 ~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~------------------~~~~~~~~h~~--~v~~l 400 (474)
.. ..+..|...+. ++++++++|++++.||.|++||+.+.+. ..+..+.+|.. .|+++
T Consensus 322 ~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 400 (425)
T 1r5m_A 322 LL-ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDL 400 (425)
T ss_dssp EE-EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEE
T ss_pred Ee-EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEE
Confidence 54 44556666664 5566799999999999999999986650 13577888876 99999
Q ss_pred EEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 401 AVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
+|+|+++ +|++++.||.|++|+++
T Consensus 401 ~~s~~~~--------~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 401 SWNCAGN--------KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EECTTSS--------EEEEEESSSCCEEEECC
T ss_pred EccCCCc--------eEEEEecCceEEEEeec
Confidence 9999999 89999999999999985
No 74
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-35 Score=290.95 Aligned_cols=283 Identities=12% Similarity=0.107 Sum_probs=211.2
Q ss_pred eeeeeecCcEEEEEEcC--------CEEEEeeCCCcEEEEeCCcc-------------ccccccCccCEEEEEec-CCEE
Q 047728 104 GSLVREEGHIYSLAAAG--------DLLYTGSDSKNIRVWKNQRE-------------FSGFKSNSGLVKAIVIS-NEKI 161 (474)
Q Consensus 104 ~~l~~h~~~i~~~~~~~--------~~l~tgs~dg~v~vwd~~~~-------------~~~~~~h~~~V~~i~~~-~~~l 161 (474)
..+.+|.+.|++++|+. ++||+|+.||+|+|||.... ...+.+|...|.+++|+ ++.|
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~l 280 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTV 280 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEE
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeE
Confidence 34667889999999873 59999999999999996532 22567899999999997 6799
Q ss_pred EEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEE--EecCCC-CEEEEE
Q 047728 162 FSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL--SMSEDQ-NLLYSA 238 (474)
Q Consensus 162 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l--~~~~~~-~~l~s~ 238 (474)
++|+.||+|++||+.++.... ..+.+|...|.++ +|++++ .+|++|
T Consensus 281 asgs~DgtV~lWD~~~~~~~~-------------------------------~~~~~H~~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPS-------------------------------FYDQVHDSYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCS-------------------------------EEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred EEEeCCCEEEEEECCCCCCce-------------------------------EEeecccccEEEEEEEcCCCCCeEEEEe
Confidence 999999999999998653211 1235599999999 578887 899999
Q ss_pred ECCCcEEEEEcCCcceeeeeeecCc--ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728 239 SWDKTFKVWRTSDYKCLESVIAHDD--AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL 315 (474)
Q Consensus 239 s~dg~i~iwd~~~~~~~~~~~~~~~--~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 315 (474)
+.|++|+|||+++++++..+.+|.. .|.+++|+|++ .+++++.|++|++||++.... ...+.+|...|+++
T Consensus 330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~------~~~l~gH~~~V~sv 403 (524)
T 2j04_B 330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA------VHPLVSRETTITAI 403 (524)
T ss_dssp ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC------CEEEEECSSCEEEE
T ss_pred ccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc------ceeeecCCCceEEE
Confidence 9999999999999988888877764 58899999988 899999999999999986543 34566899999999
Q ss_pred EEcCCCCEEEEEcCCCcEEEeecCcccccceeee---ec-ceee--EEEEecCCEEEEEeCCCcEEEEECC-CCceEEEE
Q 047728 316 AISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR---GH-KLAI--LCLVTAGNLVFSGSADMSICIWRRK-ENEHICLS 388 (474)
Q Consensus 316 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~-~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~-~~~~~~~~ 388 (474)
+|+|++++|++|+.|++|++||+.... ...... .+ ...+ ++++++++.+. ...+ +.+|+.. ++. ++.
T Consensus 404 a~Sp~g~~l~Sgs~Dgtv~lwd~~~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~--~~~ 477 (524)
T 2j04_B 404 GVSRLHPMVLAGSADGSLIITNAARRL-LHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDV--SKA 477 (524)
T ss_dssp ECCSSCCBCEEEETTTEEECCBSCSST-TTCC------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC-----------
T ss_pred EeCCCCCeEEEEECCCEEEEEechHhh-ccccccCccceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCc--cee
Confidence 999999999999999999999986542 211110 11 1123 44566777442 2222 3333332 223 466
Q ss_pred eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 389 MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 389 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
.+.+|..+|.+|+|+|++... .+|++|+.||.|+||++.-.
T Consensus 478 ~l~gh~~~V~~Vafsp~~~~~-----~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 478 KIDAHGINITCTKWNETSAGG-----KCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp ----CCCSCCCEEECCSTTTT-----TEEEEECTTSEEEEEECSCC
T ss_pred eecCCCceEEEEECCCCCCcc-----HHHHhhccCceEEEEEcccc
Confidence 888999999999999995300 07999999999999998653
No 75
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-34 Score=272.19 Aligned_cols=277 Identities=14% Similarity=0.173 Sum_probs=231.5
Q ss_pred cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728 142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH 219 (474)
Q Consensus 142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 219 (474)
..+.+|...|++++|+ +++|++++.||.|++||+.+++... .+.+|
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--------------------------------~~~~h 73 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG--------------------------------TLDGH 73 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE--------------------------------EECCC
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh--------------------------------hhhhc
Confidence 4478899999999998 6799999999999999998875432 23459
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCC-----CcEEEEEcccC
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSAD-----GTVKVWRRELQ 293 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~d-----g~i~iwd~~~~ 293 (474)
...|.+++|+|++++|++++.|+.|++||+.+++.+..+. +...+.+++|+|++ .+++++.+ +.|++||++..
T Consensus 74 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~ 152 (369)
T 3zwl_B 74 TGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD 152 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence 9999999999999999999999999999999999988887 88999999999999 88888888 99999999865
Q ss_pred CCceeee-----eeeeeecccc--cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--EEecCCE
Q 047728 294 GKGTKHF-----FSQTLLKQEC--AVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAGNL 364 (474)
Q Consensus 294 ~~~~~~~-----~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~ 364 (474)
....... .......+.. .+.+++|+|++++|++++.||.|++||+++.......+..|...+.+ +++++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTY 232 (369)
T ss_dssp TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCE
Confidence 4322111 1223334444 89999999999999999999999999999855555667777777655 4568999
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC--------------cEEEEE
Q 047728 365 VFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK--------------SVKMWR 430 (474)
Q Consensus 365 l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg--------------~i~vw~ 430 (474)
|++++.|+.|++||+.+++. +..+. +...+.+++|+|++. ++++++.++ .|++|+
T Consensus 233 l~~~~~d~~i~v~d~~~~~~--~~~~~-~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 233 FITSSRDTNSFLVDVSTLQV--LKKYE-TDCPLNTAVITPLKE--------FIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp EEEEETTSEEEEEETTTCCE--EEEEE-CSSCEEEEEECSSSS--------EEEEEECCC-------------CEEEEEE
T ss_pred EEEecCCceEEEEECCCCce--eeeec-CCCCceeEEecCCCc--------eEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 99999999999999998874 34444 778999999999999 899999888 899999
Q ss_pred ccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728 431 VSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
+.++ .....+.+|...|.++ +|+|||++|+++
T Consensus 302 ~~~~-------~~~~~~~~~~~~v~~~----~~s~~~~~l~s~ 333 (369)
T 3zwl_B 302 KIFE-------EEIGRVQGHFGPLNTV----AISPQGTSYASG 333 (369)
T ss_dssp TTTC-------CEEEEEECCSSCEEEE----EECTTSSEEEEE
T ss_pred cCCC-------cchhheecccCcEEEE----EECCCCCEEEEE
Confidence 9887 4556778899999999 667788888775
No 76
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-35 Score=290.87 Aligned_cols=265 Identities=12% Similarity=0.054 Sum_probs=199.3
Q ss_pred eeeecCcEEEEEEc--C---------CEEEEeeCCCcEEEEeCCccccccccCccCEEEEEecCCEEEEEeCCCeEEEEe
Q 047728 106 LVREEGHIYSLAAA--G---------DLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWK 174 (474)
Q Consensus 106 l~~h~~~i~~~~~~--~---------~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd 174 (474)
+..+.+.|++++|. + ++||+|+.++.. . .-...+..|++++.|++|+||+
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------------~-------~~~~~~~~laS~s~D~tI~iWd 189 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------------E-------PLNEHLEMFDKEKHSSCIQIFK 189 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-------------------------------------CEEEEEEE
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccC------------C-------ccchhhhhhccCCCCceEEEEE
Confidence 34467889887765 4 689998876531 0 0012356789999999999999
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC------CCEEEEEECCCcEEEEE
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED------QNLLYSASWDKTFKVWR 248 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~------~~~l~s~s~dg~i~iwd 248 (474)
+.+++...... ..+..|.+.|.+++|+|+ +.+|++++.||+|++||
T Consensus 190 ~~~~~~~~~~~----------------------------~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd 241 (524)
T 2j04_B 190 MNTSTLHCVKV----------------------------QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLE 241 (524)
T ss_dssp EETTTCCEEEE----------------------------EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEE
T ss_pred ccCCCCCceEE----------------------------EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEE
Confidence 98765421110 123347889999999996 57999999999999999
Q ss_pred cCCcce-----------eeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEE--
Q 047728 249 TSDYKC-----------LESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL-- 315 (474)
Q Consensus 249 ~~~~~~-----------~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l-- 315 (474)
+.+++. ...+.+|...|.+++|++++.|++|+.||+|++||++.... ....+..|...|.++
T Consensus 242 ~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~-----~~~~~~~H~~~V~sv~~ 316 (524)
T 2j04_B 242 IIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEV-----PSFYDQVHDSYILSVST 316 (524)
T ss_dssp CCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSS-----CSEEEECSSSCEEEEEE
T ss_pred cCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCC-----ceEEeecccccEEEEEE
Confidence 987642 23677899999999999888999999999999999986432 234567899999999
Q ss_pred EEcCCC-CEEEEEcCCCcEEEeecCcccccceeeeecc----eeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee
Q 047728 316 AISPDA-AIVYCGSSDGLVNFWERELNLSHGGVLRGHK----LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML 390 (474)
Q Consensus 316 ~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 390 (474)
+|+|++ .+|++++.|++|++||+++..... .+.+|. ...++++|+++.+++++.|++|++||++.+. ++..+
T Consensus 317 ~~s~~g~~~laS~S~D~tvklWD~~~~~~~~-~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~--~~~~l 393 (524)
T 2j04_B 317 AYSDFEDTVVSTVAVDGYFYIFNPKDIATTK-TTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF--AVHPL 393 (524)
T ss_dssp ECCTTSCCEEEEEETTSEEEEECGGGHHHHC-EEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT--CCEEE
T ss_pred EcCCCCCeEEEEeccCCeEEEEECCCCCccc-ccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc--cceee
Confidence 568887 899999999999999998876543 333443 2347888999999999999999999999877 34567
Q ss_pred cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 391 ~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
.+|.+.|++|+|+|+++ +|++|+.||+|++|++..
T Consensus 394 ~gH~~~V~sva~Sp~g~--------~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 394 VSRETTITAIGVSRLHP--------MVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EECSSCEEEEECCSSCC--------BCEEEETTTEEECCBSCS
T ss_pred ecCCCceEEEEeCCCCC--------eEEEEECCCEEEEEechH
Confidence 78999999999999999 899999999999998654
No 77
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.8e-34 Score=270.78 Aligned_cols=276 Identities=15% Similarity=0.161 Sum_probs=230.9
Q ss_pred eeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc-----cccccccCccCEEEEEec--CC-EEEEEeCCCeEEEE
Q 047728 104 GSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR-----EFSGFKSNSGLVKAIVIS--NE-KIFSGHQDGKIRVW 173 (474)
Q Consensus 104 ~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~-----~~~~~~~h~~~V~~i~~~--~~-~l~s~~~dg~i~vw 173 (474)
....+|.+.|++++++ +++|++|+.||.|++|+... ....+..|...|.+++|+ ++ +|++++.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 3345899999998876 88999999999999998442 245667899999999997 77 89999999999999
Q ss_pred ec-CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee--ccCCeeEEEecCCCCEEEEEECCCcEEEEEcC
Q 047728 174 KV-SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK--HFDAISSLSMSEDQNLLYSASWDKTFKVWRTS 250 (474)
Q Consensus 174 d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~ 250 (474)
++ ..++.. .+.+ |...|.+++|+| +++|++++.|+.|++||++
T Consensus 85 d~~~~~~~~---------------------------------~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~ 130 (342)
T 1yfq_A 85 DLIGSPSFQ---------------------------------ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPR 130 (342)
T ss_dssp CSSSSSSEE---------------------------------ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHH
T ss_pred EeccCCceE---------------------------------eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccc
Confidence 99 776431 2345 889999999999 9999999999999999998
Q ss_pred C---------cceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEccc-CCCceeeeeeeeeecccccEEEEEEcC-
Q 047728 251 D---------YKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRREL-QGKGTKHFFSQTLLKQECAVTALAISP- 319 (474)
Q Consensus 251 ~---------~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~- 319 (474)
+ ++++..+. |...|.+++|++++ +++++.|+.|++||++. .... .......+...+.+++|+|
T Consensus 131 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~~~i~~i~~~~~ 204 (342)
T 1yfq_A 131 NYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDN----GTIEESGLKYQIRDVALLPK 204 (342)
T ss_dssp HHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCC----CEEEECSCSSCEEEEEECSG
T ss_pred ccccccccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEECCcccccc----ceeeecCCCCceeEEEECCC
Confidence 8 77777776 88999999999987 99999999999999986 3321 1234456778999999999
Q ss_pred CCCEEEEEcCCCcEEEeecCcc-----cccceeeeecce---------ee--EEEEecCCEEEEEeCCCcEEEEECCCCc
Q 047728 320 DAAIVYCGSSDGLVNFWERELN-----LSHGGVLRGHKL---------AI--LCLVTAGNLVFSGSADMSICIWRRKENE 383 (474)
Q Consensus 320 ~~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~~~~~~---------~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~ 383 (474)
+++++++++.||.|++|+++.. ......+..|.. .+ +++++++++|++|+.||.|++||+.+++
T Consensus 205 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred CCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 9999999999999999999876 344456666633 55 5556689999999999999999999887
Q ss_pred eEEEEeecCC-ccceEEEEEeeCCccccccceEEEEEecCCCc-EEEEEc
Q 047728 384 HICLSMLTGH-SGPVKCLAVEKDDESLSREKRWILYSGSLDKS-VKMWRV 431 (474)
Q Consensus 384 ~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~-i~vw~~ 431 (474)
.+..+.+| ..+|++++ |++. +|++++.||. .+.|..
T Consensus 285 --~~~~~~~~h~~~v~~~~--~~~~--------~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 285 --KIKNFAKFNEDSVVKIA--CSDN--------ILCLATSDDTFKTNAAI 322 (342)
T ss_dssp --EEEECCCCSSSEEEEEE--ECSS--------EEEEEEECTHHHHCSSS
T ss_pred --HhhhhhcccCCCceEec--CCCC--------eEEEEecCCcccccccc
Confidence 46778888 99999999 9998 9999999998 655554
No 78
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.2e-35 Score=272.79 Aligned_cols=255 Identities=16% Similarity=0.231 Sum_probs=198.7
Q ss_pred eeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc----cccccccCccCEEEEEec----CCEEEEEeCCCeEEEEe
Q 047728 105 SLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR----EFSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIRVWK 174 (474)
Q Consensus 105 ~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~----~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~vwd 174 (474)
.+.+|++.|++++|+ |++||+|+.|++|+|||... .+..+.+|.+.|.+++|+ +++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456899999999986 89999999999999999542 356788999999999995 57999999999999999
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC--CCEEEEEECCCcEEEEEcCCc
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED--QNLLYSASWDKTFKVWRTSDY 252 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~ 252 (474)
+.++...... .+.+|...|.+++|+|+ +.+|++|+.|++|++||++++
T Consensus 88 ~~~~~~~~~~------------------------------~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 88 EENGTWEKSH------------------------------EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp CSSSCCCEEE------------------------------EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred CCCCcceEEE------------------------------EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 9876432111 23459999999999997 789999999999999999875
Q ss_pred ce---eeeeeecCcceeEEEecCC-----------------C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc
Q 047728 253 KC---LESVIAHDDAVNSIVAGFD-----------------G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA 311 (474)
Q Consensus 253 ~~---~~~~~~~~~~v~~v~~~~~-----------------~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 311 (474)
.. ...+.+|...|.+++|+|+ + .|++|+.|+.|++||++.... ......+.+|...
T Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---~~~~~~l~~h~~~ 214 (316)
T 3bg1_A 138 GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ---WKEEQKLEAHSDW 214 (316)
T ss_dssp SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC---EEEEECCBCCSSC
T ss_pred CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc---cceeeecccCCCc
Confidence 32 3456678999999999987 3 799999999999999864321 1134567789999
Q ss_pred EEEEEEcCCC----CEEEEEcCCCcEEEeecCcc---cccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECC-C
Q 047728 312 VTALAISPDA----AIVYCGSSDGLVNFWERELN---LSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRK-E 381 (474)
Q Consensus 312 v~~l~~~~~~----~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~-~ 381 (474)
|.+++|+|++ .+|++++.|++|++||++.. ......+..|...+ +++++++++|++++.|+.|+||+.. .
T Consensus 215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 9999999986 89999999999999998763 12223455666666 4556789999999999999999975 3
Q ss_pred CceEEEEeecC
Q 047728 382 NEHICLSMLTG 392 (474)
Q Consensus 382 ~~~~~~~~~~~ 392 (474)
++..++..+..
T Consensus 295 g~~~~~~~~~~ 305 (316)
T 3bg1_A 295 GQWVCISDVNK 305 (316)
T ss_dssp SCEEEEEECC-
T ss_pred CcEEEeeeccC
Confidence 34344444443
No 79
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=282.38 Aligned_cols=311 Identities=15% Similarity=0.235 Sum_probs=224.0
Q ss_pred eecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc-------------cccccccCc------------cCEEEEEec--C
Q 047728 108 REEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR-------------EFSGFKSNS------------GLVKAIVIS--N 158 (474)
Q Consensus 108 ~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~-------------~~~~~~~h~------------~~V~~i~~~--~ 158 (474)
.|.+.|.+++|+ |++||+|+.||.|+|||... ....+.+|. ..|.+++|+ +
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999987 88999999999999999542 356778898 889999998 3
Q ss_pred --CEEEEEeCCCeEEEEecCCCCcceeeee-----cc---cCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728 159 --EKIFSGHQDGKIRVWKVSSKDASIHKRV-----GT---LPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM 228 (474)
Q Consensus 159 --~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 228 (474)
..|++++.|++|++|++..+........ +. ......+......+...............+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 5899999999999999986543210000 00 0000000000000000111111111223579999999999
Q ss_pred cCCCCEEEEEECCCcEEEEEcCC-cceee-------eeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCcee
Q 047728 229 SEDQNLLYSASWDKTFKVWRTSD-YKCLE-------SVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTK 298 (474)
Q Consensus 229 ~~~~~~l~s~s~dg~i~iwd~~~-~~~~~-------~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~ 298 (474)
+|++++|++| .|+.|++||+++ ++.+. .+..|...|.+++|+|++ .|++|+.||.|++||++.......
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 899999999984 44444 255789999999999986 899999999999999986543110
Q ss_pred eeeeeeeecccc------------cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeeccee------------
Q 047728 299 HFFSQTLLKQEC------------AVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLA------------ 354 (474)
Q Consensus 299 ~~~~~~~~~~~~------------~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~------------ 354 (474)
....+..+.. .|.+++|+|++++|++++. +.|++||++........+.+|...
T Consensus 265 --~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 265 --HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp --TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred --eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence 1233444443 8999999999999999999 999999998733444555666421
Q ss_pred -----eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee------------------------------cCCccceEE
Q 047728 355 -----ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML------------------------------TGHSGPVKC 399 (474)
Q Consensus 355 -----v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~------------------------------~~h~~~v~~ 399 (474)
.+++++++++|++|+.||.|++||+.+++...+... ..+...|..
T Consensus 342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 421 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILH 421 (447)
T ss_dssp GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCE
T ss_pred cccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeE
Confidence 278999999999999999999999998874321110 123457899
Q ss_pred EEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728 400 LAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431 (474)
Q Consensus 400 l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~ 431 (474)
++|+|++. +||+++.++ +.+|.-
T Consensus 422 ~~~~p~~~--------~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 422 TAWHPKEN--------IIAVATTNN-LYIFQD 444 (447)
T ss_dssp EEECSSSS--------EEEEECSSC-EEEEEC
T ss_pred EEECCCCC--------EEEEEecce-eeeecc
Confidence 99999999 899988876 788864
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.2e-34 Score=297.58 Aligned_cols=250 Identities=21% Similarity=0.360 Sum_probs=206.0
Q ss_pred ccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728 143 GFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH 219 (474)
Q Consensus 143 ~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 219 (474)
.+++|.+.|++++++ +++|+||+.|++|++|++.......... ...+.+|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~---------------------------~~~~~~h 429 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVA---------------------------QRRLTGH 429 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEE---------------------------EEEEECC
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccc---------------------------cceecCC
Confidence 467899999999997 3589999999999999998754321110 0234669
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCcee
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTK 298 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~ 298 (474)
...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++ .|++++.|++|++||..... .
T Consensus 430 ~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~---~ 506 (694)
T 3dm0_A 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC---K 506 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE---E
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc---c
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999975321 1
Q ss_pred eeeeeeeecccccEEEEEEcCCC--CEEEEEcCCCcEEEeecCcccccceeeeecceeeE--EEEecCCEEEEEeCCCcE
Q 047728 299 HFFSQTLLKQECAVTALAISPDA--AIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAIL--CLVTAGNLVFSGSADMSI 374 (474)
Q Consensus 299 ~~~~~~~~~~~~~v~~l~~~~~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sgs~dg~i 374 (474)
.........|...|.+++|+|++ ..|++++.|+.|++||++..... ..+.+|...+. ++++++++|++|+.||.|
T Consensus 507 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~-~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i 585 (694)
T 3dm0_A 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR-STLAGHTGYVSTVAVSPDGSLCASGGKDGVV 585 (694)
T ss_dssp EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE-EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 11222335688899999999986 68999999999999999876544 56677887775 455689999999999999
Q ss_pred EEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 375 CIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 375 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
++||+.+++ ++..+. +...|.+++|+|++. +|++++ |+.|+|||+.++.
T Consensus 586 ~iwd~~~~~--~~~~~~-~~~~v~~~~~sp~~~--------~l~~~~-~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 586 LLWDLAEGK--KLYSLE-ANSVIHALCFSPNRY--------WLCAAT-EHGIKIWDLESKS 634 (694)
T ss_dssp EEEETTTTE--EEECCB-CSSCEEEEEECSSSS--------EEEEEE-TTEEEEEETTTTE
T ss_pred EEEECCCCc--eEEEec-CCCcEEEEEEcCCCc--------EEEEEc-CCCEEEEECCCCC
Confidence 999999887 344554 456899999999987 666655 5669999998763
No 81
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=4.2e-34 Score=269.50 Aligned_cols=294 Identities=13% Similarity=0.133 Sum_probs=214.4
Q ss_pred eeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc------cccccccCccCEEEEEec----CCEEEEEeCCCeEE
Q 047728 104 GSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR------EFSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIR 171 (474)
Q Consensus 104 ~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~------~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~ 171 (474)
..+.+|++.|++++++ +++|++|+.||.|++||... ....+.+|...|.+++|+ +++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 3467899999999986 88999999999999999552 455678899999999996 57999999999999
Q ss_pred EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC--CCEEEEEECCCcEEEEEc
Q 047728 172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED--QNLLYSASWDKTFKVWRT 249 (474)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~ 249 (474)
+||+..++....... . .....+.+|...|.+++|+|+ +.+|++++.|+.|++||+
T Consensus 85 vwd~~~~~~~~~~~~------------------~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 85 LWEEDPDQEECSGRR------------------W-----NKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 141 (351)
T ss_dssp EEEECTTSCTTSSCS------------------E-----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEEC
T ss_pred EEecCCCcccccccC------------------c-----ceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecC
Confidence 999988753210000 0 001234459999999999999 999999999999999999
Q ss_pred CCcceeeeee-------------ecCcceeEEEecCC---C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccE
Q 047728 250 SDYKCLESVI-------------AHDDAVNSIVAGFD---G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAV 312 (474)
Q Consensus 250 ~~~~~~~~~~-------------~~~~~v~~v~~~~~---~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 312 (474)
++++.+..+. .|...+.++.|+|+ + .+++++.++.+.+|+..... ......+..|...|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~i 217 (351)
T 3f3f_A 142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK----LHVAAKLPGHKSLI 217 (351)
T ss_dssp SSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC----EEEEEECCCCCSCE
T ss_pred CChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc----eeeeeecCCCCcce
Confidence 9887665543 57789999999997 5 89999999999777765432 12345667789999
Q ss_pred EEEEEcCCC----CEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEE----EeCCCcEEEEECCCC
Q 047728 313 TALAISPDA----AIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFS----GSADMSICIWRRKEN 382 (474)
Q Consensus 313 ~~l~~~~~~----~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s----gs~dg~i~iwd~~~~ 382 (474)
++++|+|++ ++|++++.||.|++||++......... .+.... .........+.. +.....+.+|+....
T Consensus 218 ~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (351)
T 3f3f_A 218 RSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASE-ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV 296 (351)
T ss_dssp EEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------------------------CCSEEE
T ss_pred eEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccC-CcccceeccCCCcccccccccccccccceeeeecccccc
Confidence 999999998 899999999999999998764432221 111111 112222223333 333445555554443
Q ss_pred ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 383 EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 383 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
+ .+..+.+|...|++++|+|++. +|++++.||.|++|++..+.
T Consensus 297 ~--~~~~~~~h~~~v~~~~~s~~~~--------~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 297 E--LLSEHDDHNGEVWSVSWNLTGT--------ILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp E--EEEEECTTSSCEEEEEECSSSC--------CEEEEETTSCEEEEEECTTS
T ss_pred c--EEEEEecccccEEEEEEcCCCC--------EEEEecCCCcEEEEecCcCc
Confidence 3 5678889999999999999998 89999999999999998764
No 82
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.1e-34 Score=270.64 Aligned_cols=250 Identities=18% Similarity=0.255 Sum_probs=198.5
Q ss_pred ccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc
Q 047728 143 GFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF 220 (474)
Q Consensus 143 ~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 220 (474)
.+.+|.+.|.+++|+ +++|++|+.|++|+|||+.++..... ..+.+|.
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~------------------------------~~l~gH~ 57 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI------------------------------ADLRGHE 57 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE------------------------------EEEECCS
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE------------------------------EEEcCCC
Confidence 456899999999998 78999999999999999986532111 2345699
Q ss_pred CCeeEEEecC--CCCEEEEEECCCcEEEEEcCCcc--eeeeeeecCcceeEEEecCC--C-eEEEeeCCCcEEEEEcccC
Q 047728 221 DAISSLSMSE--DQNLLYSASWDKTFKVWRTSDYK--CLESVIAHDDAVNSIVAGFD--G-LVFTGSADGTVKVWRRELQ 293 (474)
Q Consensus 221 ~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~--~-~l~~~~~dg~i~iwd~~~~ 293 (474)
..|.+++|++ ++++|++|+.|++|++||+++++ .+..+.+|...|.+++|+|+ + +|++|+.|+.|++||++..
T Consensus 58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 9999999986 48999999999999999998873 56677889999999999997 5 8999999999999998754
Q ss_pred CCceeeeeeeeeecccccEEEEEEcCC-----------------CCEEEEEcCCCcEEEeecCccc--ccceeeeeccee
Q 047728 294 GKGTKHFFSQTLLKQECAVTALAISPD-----------------AAIVYCGSSDGLVNFWERELNL--SHGGVLRGHKLA 354 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~-----------------~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~~ 354 (474)
.. .........|...|.+++|+|+ +++|++++.|+.|++||++... .....+.+|...
T Consensus 138 ~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~ 214 (316)
T 3bg1_A 138 GQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW 214 (316)
T ss_dssp SC---EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC
T ss_pred CC---cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc
Confidence 32 1123445678889999999997 4789999999999999997542 233456788888
Q ss_pred eEEEEe--cC----CEEEEEeCCCcEEEEECCCCc--eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcE
Q 047728 355 ILCLVT--AG----NLVFSGSADMSICIWRRKENE--HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSV 426 (474)
Q Consensus 355 v~~~~~--~~----~~l~sgs~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i 426 (474)
|.++.+ ++ .+|++|+.|++|+|||+.... ......+..|...|.+++|+|++. +|++++.|++|
T Consensus 215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~--------~las~~~D~~v 286 (316)
T 3bg1_A 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN--------ILAVSGGDNKV 286 (316)
T ss_dssp EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC--------CEEEEESSSCE
T ss_pred eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC--------EEEEEcCCCeE
Confidence 876654 44 789999999999999997621 111223456889999999999998 89999999999
Q ss_pred EEEEccC
Q 047728 427 KMWRVSE 433 (474)
Q Consensus 427 ~vw~~~~ 433 (474)
+||+...
T Consensus 287 ~lw~~~~ 293 (316)
T 3bg1_A 287 TLWKESV 293 (316)
T ss_dssp EEEEECT
T ss_pred EEEEECC
Confidence 9999863
No 83
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.6e-33 Score=273.46 Aligned_cols=263 Identities=26% Similarity=0.441 Sum_probs=225.5
Q ss_pred cccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728 144 FKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI 223 (474)
Q Consensus 144 ~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 223 (474)
...|...|.++.+++++|++|+.||.|++||+.+++... .+.+|...|
T Consensus 129 ~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~--------------------------------~~~~h~~~v 176 (435)
T 1p22_A 129 RSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR--------------------------------ILTGHTGSV 176 (435)
T ss_dssp CCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEE--------------------------------EECCCSSCE
T ss_pred ccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEE--------------------------------EEcCCCCcE
Confidence 345778899999999999999999999999998876432 234599999
Q ss_pred eEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeee
Q 047728 224 SSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQ 303 (474)
Q Consensus 224 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 303 (474)
.+++| ++++|++|+.||+|++||+.+++.+..+..|...|.+++|++ +.+++|+.||.|++||++..... ....
T Consensus 177 ~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~---~~~~ 250 (435)
T 1p22_A 177 LCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDI---TLRR 250 (435)
T ss_dssp EEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCC---EEEE
T ss_pred EEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCc---eeee
Confidence 99999 788999999999999999999999999999999999999974 49999999999999999865432 1235
Q ss_pred eeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCc
Q 047728 304 TLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENE 383 (474)
Q Consensus 304 ~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~ 383 (474)
...+|...|.+++| ++++|++++.||.|++||++++... ..+.+|...+.++.++++++++|+.||.|++||+++++
T Consensus 251 ~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~ 327 (435)
T 1p22_A 251 VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFV-RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA 327 (435)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCC
T ss_pred EecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEE-EEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCC
Confidence 66788999999999 7889999999999999999987654 55678999999999999999999999999999999887
Q ss_pred eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCC--CcccccccCCCCCCCcccc
Q 047728 384 HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVS--TTQQHPLEGHGVAPNSLPY 459 (474)
Q Consensus 384 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~ 459 (474)
++..+.+|...|.+++| ++. +|++|+.||.|++||+..+..+... ......+.+|...|.+++|
T Consensus 328 --~~~~~~~h~~~v~~~~~--~~~--------~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 393 (435)
T 1p22_A 328 --CLRVLEGHEELVRCIRF--DNK--------RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF 393 (435)
T ss_dssp --EEEEECCCSSCEEEEEC--CSS--------EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE
T ss_pred --EEEEEeCCcCcEEEEEe--cCC--------EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe
Confidence 56788999999999999 566 8999999999999999876432211 1256678899999999976
No 84
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.6e-33 Score=274.04 Aligned_cols=305 Identities=19% Similarity=0.325 Sum_probs=241.6
Q ss_pred CCCcceeeeeeeeecCcEEEEEEc-CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec----CCEEEEEeCCC
Q 047728 96 GFSPNVLIGSLVREEGHIYSLAAA-GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS----NEKIFSGHQDG 168 (474)
Q Consensus 96 ~~~~~~~~~~l~~h~~~i~~~~~~-~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg 168 (474)
+......+..+.+|.+.|+++++. +.+|++|+.||+|++||.. +.+..+.+|...|.++++. +.+|++++.||
T Consensus 148 d~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~ 227 (464)
T 3v7d_B 148 DSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTS
T ss_pred ECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCC
Confidence 445567888999999999999998 4599999999999999954 5677788999999999986 36899999999
Q ss_pred eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEE
Q 047728 169 KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWR 248 (474)
Q Consensus 169 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd 248 (474)
+|++||+.+............ .. ..........+ ....+.+|...|.++ ++++++|++++.|+.|++||
T Consensus 228 ~i~vwd~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~------~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd 296 (464)
T 3v7d_B 228 TLHVWKLPKESSVPDHGEEHD--YP-LVFHTPEENPY------FVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWD 296 (464)
T ss_dssp CEEEEECCCCCCC------CC--SS-EEESCGGGCTT------EEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEE
T ss_pred cEEEeeCCCCcccccccccCC--cc-eEeeccCCCeE------EEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEE
Confidence 999999998764432111100 00 00000000000 012456688889888 56788999999999999999
Q ss_pred cCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE
Q 047728 249 TSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG 327 (474)
Q Consensus 249 ~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 327 (474)
+.+++++..+.+|...|.+++|+|++ .+++|+.||.|++||++.+. ....+..|...|.+++|+ +.+|+++
T Consensus 297 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~--~~~l~s~ 368 (464)
T 3v7d_B 297 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE------LMYTLQGHTALVGLLRLS--DKFLVSA 368 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE------EEEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred CCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------EEEEEeCCCCcEEEEEEc--CCEEEEE
Confidence 99999999999999999999999998 99999999999999997643 356677899999999997 5899999
Q ss_pred cCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEE-eecCCccceEEEEEeeCC
Q 047728 328 SSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLS-MLTGHSGPVKCLAVEKDD 406 (474)
Q Consensus 328 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~~~h~~~v~~l~~~~~~ 406 (474)
+.||.|++||+++..........+...+.+++++++++++|+ ||.|++||+.+++. +. .+..|...|.+++|+ ..
T Consensus 369 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~--~~~~~~~~~~~v~~v~~~-~~ 444 (464)
T 3v7d_B 369 AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKL--VHANILKDADQIWSVNFK-GK 444 (464)
T ss_dssp ETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCE--EESCTTTTCSEEEEEEEE-TT
T ss_pred eCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcE--EehhhccCCCcEEEEEec-CC
Confidence 999999999999876655554556677789999999999999 99999999999884 34 367789999999997 33
Q ss_pred ccccccceEEEEEecCCCcEEEEEc
Q 047728 407 ESLSREKRWILYSGSLDKSVKMWRV 431 (474)
Q Consensus 407 ~~~~~~~~~~l~s~s~Dg~i~vw~~ 431 (474)
. ++++++.||.+.+|-+
T Consensus 445 ~--------l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 445 T--------LVAAVEKDGQSFLEIL 461 (464)
T ss_dssp E--------EEEEEEETTEEEEEEE
T ss_pred E--------EEEEEEeCCeEEEEEe
Confidence 3 6777778887666544
No 85
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=274.72 Aligned_cols=282 Identities=15% Similarity=0.172 Sum_probs=219.1
Q ss_pred ccccCccCEEEEEec--CC-EEEEEeC---CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728 143 GFKSNSGLVKAIVIS--NE-KIFSGHQ---DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW 216 (474)
Q Consensus 143 ~~~~h~~~V~~i~~~--~~-~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (474)
.+.+|...|.+++|+ +. .+++++. ||.|++|++.+++..... .
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~-------------------------------~ 61 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR-------------------------------E 61 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE-------------------------------E
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee-------------------------------e
Confidence 456799999999998 33 4456665 999999999987643221 1
Q ss_pred eeccCCeeEEEecCC---CCEEEEEECCCcEEEEEcCCcc-eeeeeeecCcceeEEEe------cCCC-eEEEeeCCCcE
Q 047728 217 IKHFDAISSLSMSED---QNLLYSASWDKTFKVWRTSDYK-CLESVIAHDDAVNSIVA------GFDG-LVFTGSADGTV 285 (474)
Q Consensus 217 ~~h~~~V~~l~~~~~---~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~v~~------~~~~-~l~~~~~dg~i 285 (474)
.+|...|.+++|+|+ +.+|++++.|+.|++||+.+++ .+..+..|...|.++.| ++++ .|++++.||.|
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 248999999999998 6999999999999999999988 88889999999999955 5677 99999999999
Q ss_pred EEEEcccCCCceeeeeeeeeecc----cccEEEEE----EcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--
Q 047728 286 KVWRRELQGKGTKHFFSQTLLKQ----ECAVTALA----ISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI-- 355 (474)
Q Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~----~~~v~~l~----~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v-- 355 (474)
++||++..... ...+..+ ...+.+++ |+|++++|++++.|+.|++||+++.... ....|...+
T Consensus 142 ~vwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~v~~ 214 (357)
T 3i2n_A 142 KVWDPRQKDDP-----VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR--WETNIKNGVCS 214 (357)
T ss_dssp EEECTTSCSSC-----SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE--EEEECSSCEEE
T ss_pred EEEeCCCCCCc-----ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee--eecCCCCceEE
Confidence 99999865421 2222222 34788988 7889999999999999999999987653 334555555
Q ss_pred EEEEe---cCCEEEEEeCCCcEEEEECCCCceE---EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEE
Q 047728 356 LCLVT---AGNLVFSGSADMSICIWRRKENEHI---CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429 (474)
Q Consensus 356 ~~~~~---~~~~l~sgs~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw 429 (474)
+++++ ++++|++|+.||.|++||+++++.. ....+.+|...|++++|+|++.. +|++++.||.|++|
T Consensus 215 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~l~~~~~dg~i~iw 287 (357)
T 3i2n_A 215 LEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRE-------LFLTAGGAGGLHLW 287 (357)
T ss_dssp EEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEE-------EEEEEETTSEEEEE
T ss_pred EEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCc-------EEEEEeCCCcEEEe
Confidence 45556 7899999999999999999765421 12244589999999999999863 69999999999999
Q ss_pred EccCCCCCCCC------------CcccccccCCCCCCCccccCCCCCcCCceee-cc
Q 047728 430 RVSEQAPPLVS------------TTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ-KR 473 (474)
Q Consensus 430 ~~~~~~~~~~~------------~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~-~~ 473 (474)
++......... ......+.+|...|.++ +|+|||++++ ++
T Consensus 288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~----~~s~~~~~l~~s~ 340 (357)
T 3i2n_A 288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL----DWSPDKRGLCVCS 340 (357)
T ss_dssp EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEE----EECSSSTTEEEEE
T ss_pred ecCCCcccccccCCCCccccccccceeeccccCCCCeeEE----EEcCCCCeEEEEe
Confidence 99876443211 12455677899999998 6778888886 44
No 86
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=261.56 Aligned_cols=268 Identities=20% Similarity=0.289 Sum_probs=219.9
Q ss_pred ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 139 REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 139 ~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
+....+.+|.+.|.+++|. +++|++++.||.|++||+.++.... .+.
T Consensus 9 ~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~--------------------------------~~~ 56 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGT--------------------------------VVY 56 (313)
T ss_dssp EEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEE--------------------------------EEE
T ss_pred HHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEE--------------------------------Eee
Confidence 4566788999999999996 7799999999999999997754321 234
Q ss_pred eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc---ceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCC
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY---KCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQG 294 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~ 294 (474)
.|...|.+++|+|++++|++++.|+.|++|++... +.+..+..|...|.++.|. ...+++++.||.|++||..
T Consensus 57 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d~~--- 132 (313)
T 3odt_A 57 TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWKEG--- 132 (313)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETT---
T ss_pred cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEcCC---
Confidence 58999999999999999999999999999998754 5677888899999999993 3499999999999999921
Q ss_pred CceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEEEeCC
Q 047728 295 KGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSAD 371 (474)
Q Consensus 295 ~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~d 371 (474)
. .......|...+.+++|.| +++++++++.|+.|++||.... .......|...+ +++++++. +++++.|
T Consensus 133 ~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d 204 (313)
T 3odt_A 133 S-----LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV--IKTFSGIHNDVVRHLAVVDDGH-FISCSND 204 (313)
T ss_dssp E-----EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE--EEEECSSCSSCEEEEEEEETTE-EEEEETT
T ss_pred c-----EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce--EEEEeccCcccEEEEEEcCCCe-EEEccCC
Confidence 1 3556677899999999998 9999999999999999994432 222222255555 45556666 9999999
Q ss_pred CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCC
Q 047728 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHG 451 (474)
Q Consensus 372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 451 (474)
|.|++||+++++ .+..+.+|...|++++|+|++. |++++.||.|++||+.++ .....+..|.
T Consensus 205 g~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~---------l~~~~~dg~v~iwd~~~~-------~~~~~~~~~~ 266 (313)
T 3odt_A 205 GLIKLVDMHTGD--VLRTYEGHESFVYCIKLLPNGD---------IVSCGEDRTVRIWSKENG-------SLKQVITLPA 266 (313)
T ss_dssp SEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSC---------EEEEETTSEEEEECTTTC-------CEEEEEECSS
T ss_pred CeEEEEECCchh--hhhhhhcCCceEEEEEEecCCC---------EEEEecCCEEEEEECCCC-------ceeEEEeccC
Confidence 999999999887 5677889999999999999985 789999999999999887 4556677788
Q ss_pred CCCCccccCCCCCcCCceeec
Q 047728 452 VAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 452 ~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
..|.++ +|+|||++++.
T Consensus 267 ~~i~~~----~~~~~~~~~~~ 283 (313)
T 3odt_A 267 ISIWSV----DCMSNGDIIVG 283 (313)
T ss_dssp SCEEEE----EECTTSCEEEE
T ss_pred ceEEEE----EEccCCCEEEE
Confidence 888888 66778887654
No 87
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.2e-34 Score=273.03 Aligned_cols=273 Identities=12% Similarity=0.136 Sum_probs=211.8
Q ss_pred ccccccCccCEEEEEec--C-CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 141 FSGFKSNSGLVKAIVIS--N-EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 141 ~~~~~~h~~~V~~i~~~--~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
...+.+|...|.+++|+ + ++|++|+.||.|++||+.+++...... ..
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------------~~ 115 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ------------------------------GM 115 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC------------------------------CC
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee------------------------------cC
Confidence 44567899999999998 4 689999999999999999776543221 12
Q ss_pred eccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeec---CcceeEEEecCCC-eEEEeeCCCcEEEEEccc
Q 047728 218 KHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAH---DDAVNSIVAGFDG-LVFTGSADGTVKVWRREL 292 (474)
Q Consensus 218 ~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~ 292 (474)
+|...|.+++|+| ++++|++++.|+.|++||+++ ..+..+..+ ...|.+++|+|++ .|++++.|+.|++||++.
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 194 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG 194 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC
Confidence 4999999999999 789999999999999999986 555555544 4789999999999 999999999999999842
Q ss_pred CCCceeeeeeeeeecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCcccccc--eeeeecceeeEE--EEe-cCCEEE
Q 047728 293 QGKGTKHFFSQTLLKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHG--GVLRGHKLAILC--LVT-AGNLVF 366 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~~v~~--~~~-~~~~l~ 366 (474)
. ....+..|...|.+++|+|+++ +|++++.|+.|++||+++..... ....+|...+.+ +++ ++++|+
T Consensus 195 -~------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~ 267 (383)
T 3ei3_B 195 -H------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLL 267 (383)
T ss_dssp -C------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEE
T ss_pred -C------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEE
Confidence 1 3556678999999999999998 99999999999999998732211 112257666654 556 789999
Q ss_pred EEeCCCcEEEEECCCCceEEEEeecC-------Ccc----------ceEEEEEeeCCccccccceEEEEEecCCCcEEEE
Q 047728 367 SGSADMSICIWRRKENEHICLSMLTG-------HSG----------PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429 (474)
Q Consensus 367 sgs~dg~i~iwd~~~~~~~~~~~~~~-------h~~----------~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw 429 (474)
+++.|+.|++||+++++.. ..+.+ |.. .+..++|+|++. + +++.|+.|++|
T Consensus 268 ~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~--------~--s~s~d~~i~iw 335 (383)
T 3ei3_B 268 TTDQRNEIRVYSSYDWSKP--DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ--------L--LLNDKRTIDIY 335 (383)
T ss_dssp EEESSSEEEEEETTBTTSC--SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT--------T--CTTCCCCEEEE
T ss_pred EEcCCCcEEEEECCCCccc--cccccccccccccccceEEeccCCCCceEEEecCCcc--------c--ccCCCCeEEEE
Confidence 9999999999999877532 22222 223 344466666665 4 78899999999
Q ss_pred EccCCCCCCCCCcccccccC--CCCCCCccccCCCCCcCCceeeccC
Q 047728 430 RVSEQAPPLVSTTQQHPLEG--HGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
|+.+++ ....+.+ |...+..+ +|+|||++|+++|
T Consensus 336 d~~~~~-------~~~~l~~~~~~~~~~~~----~~s~~g~~l~s~s 371 (383)
T 3ei3_B 336 DANSGG-------LVHQLRDPNAAGIISLN----KFSPTGDVLASGM 371 (383)
T ss_dssp ETTTCC-------EEEEECBTTBCSCCCEE----EECTTSSEEEEEE
T ss_pred ecCCCc-------eeeeecCCCCCceEEEE----EEecCccEEEEec
Confidence 998873 4455555 45556666 6788999998763
No 88
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-35 Score=283.72 Aligned_cols=267 Identities=13% Similarity=0.252 Sum_probs=205.9
Q ss_pred EEcCCEEEEeeCCCcEEEEeC-Ccccccc-ccCccCEEEEEecC---CEEEEEeCCCeEEEEecCC---CCcceeeeecc
Q 047728 117 AAAGDLLYTGSDSKNIRVWKN-QREFSGF-KSNSGLVKAIVISN---EKIFSGHQDGKIRVWKVSS---KDASIHKRVGT 188 (474)
Q Consensus 117 ~~~~~~l~tgs~dg~v~vwd~-~~~~~~~-~~h~~~V~~i~~~~---~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~ 188 (474)
.++++.+++++ .|+. ++.+..+ .+|.+.|++++|++ ++|++|+.||+|++||+.+ +.....
T Consensus 36 ~~~~~~~~~~~------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----- 104 (437)
T 3gre_A 36 GPIQEIVRSPN------MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS----- 104 (437)
T ss_dssp CCCCCCCCCCC------GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC-----
T ss_pred CCccccccccc------cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce-----
Confidence 34455555544 3773 3556667 88999999999975 5999999999999999876 321100
Q ss_pred cCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC---Ccceeeeeee-----
Q 047728 189 LPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS---DYKCLESVIA----- 260 (474)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~----- 260 (474)
....+|...|.+++|+|++++|++++.|+.|++||+. +++.+..+..
T Consensus 105 -------------------------~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~ 159 (437)
T 3gre_A 105 -------------------------SLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK 159 (437)
T ss_dssp -------------------------SEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -------------------------eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence 0112489999999999999999999999999999994 5555554433
Q ss_pred -------cCcceeEEE--ecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeec--ccccEEEEEEcCCCCEEEEEc
Q 047728 261 -------HDDAVNSIV--AGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK--QECAVTALAISPDAAIVYCGS 328 (474)
Q Consensus 261 -------~~~~v~~v~--~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~~ 328 (474)
+...+.++. +++++ .+++++.|+.|++||++.... ...+.. |...|++++|+|++++|++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 233 (437)
T 3gre_A 160 INLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER------LQIIENSPRHGAVSSICIDEECCVLILGT 233 (437)
T ss_dssp EEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE------EEEEECCGGGCCEEEEEECTTSCEEEEEE
T ss_pred EEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee------eEEEccCCCCCceEEEEECCCCCEEEEEc
Confidence 334555555 44667 999999999999999986542 344444 788999999999999999999
Q ss_pred CCCcEEEeecCcccccceeeeecceeeEEEE------ecCCEEEEEeCCCcEEEEECCCCceEEEEeecC----------
Q 047728 329 SDGLVNFWERELNLSHGGVLRGHKLAILCLV------TAGNLVFSGSADMSICIWRRKENEHICLSMLTG---------- 392 (474)
Q Consensus 329 ~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~------~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~---------- 392 (474)
.||.|++||++.+.........|...+.++. +++.+|++|+.||.|++||+++++. +..+.+
T Consensus 234 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~ 311 (437)
T 3gre_A 234 TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC--QYAFINSDEQPSMEHF 311 (437)
T ss_dssp TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE--EEEEESSSSCCCGGGG
T ss_pred CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE--EEEEEcCCCCCcccee
Confidence 9999999999987665444446777777663 3467999999999999999998873 333332
Q ss_pred ----------------CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 393 ----------------HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 393 ----------------h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
|...|++++|+ ++. +|++|+.|+.|++||+.+++.
T Consensus 312 ~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~--------~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 312 LPIEKGLEELNFCGIRSLNALSTISVS-NDK--------ILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp SCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE--------EEEEEGGGTEEEEEETTCGGG
T ss_pred cccccccccceecccccCCceEEEEEC-Cce--------EEEecCCCCeEEEEECCCccc
Confidence 66778899999 666 899999999999999988743
No 89
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=269.53 Aligned_cols=249 Identities=20% Similarity=0.217 Sum_probs=204.7
Q ss_pred eeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC----ccccccccCccCEEEEEec----CCEEEEEeCCCeEE
Q 047728 102 LIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ----REFSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIR 171 (474)
Q Consensus 102 ~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~ 171 (474)
++..+.+|++.|.+++++ +++|++|+.||.|+|||.. +....+.+|...|.+++|+ +++|++++.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 456789999999999987 8899999999999999854 3456788999999999997 67999999999999
Q ss_pred EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC--CCEEEEEECCCcEEEEEc
Q 047728 172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED--QNLLYSASWDKTFKVWRT 249 (474)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~ 249 (474)
+||+.+++.... ..+..|...|.+++|+|+ +.+|++++.|+.|++||+
T Consensus 83 iwd~~~~~~~~~------------------------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~ 132 (379)
T 3jrp_A 83 IWKEENGRWSQI------------------------------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 132 (379)
T ss_dssp EEEEETTEEEEE------------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred EEEcCCCceeEe------------------------------eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEec
Confidence 999988752211 123348899999999998 999999999999999999
Q ss_pred CCcc--eeeeeeecCcceeEEEecC-------------CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEE
Q 047728 250 SDYK--CLESVIAHDDAVNSIVAGF-------------DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVT 313 (474)
Q Consensus 250 ~~~~--~~~~~~~~~~~v~~v~~~~-------------~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 313 (474)
.+.. ....+..|...|.+++|+| ++ .+++++.||.|++||++.... .......+..|...|.
T Consensus 133 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~h~~~v~ 210 (379)
T 3jrp_A 133 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWVR 210 (379)
T ss_dssp CTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCEE
T ss_pred CCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc--ceeeEEEEecccCcEe
Confidence 8874 3445678999999999999 46 899999999999999986543 2234556778999999
Q ss_pred EEEEcCC---CCEEEEEcCCCcEEEeecCcccccc----eeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCC
Q 047728 314 ALAISPD---AAIVYCGSSDGLVNFWERELNLSHG----GVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKEN 382 (474)
Q Consensus 314 ~l~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~~----~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~ 382 (474)
+++|+|+ +.+|++++.||.|++||++...... .....|...+ +++++++++|++++.||.|++|++...
T Consensus 211 ~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 211 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred EEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 9999999 8999999999999999998763221 1122355555 566678999999999999999999754
No 90
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=267.11 Aligned_cols=290 Identities=18% Similarity=0.248 Sum_probs=232.5
Q ss_pred CCCcceeeeeeeeecCcEEEEEEc-----CCEEEEeeCCCcEEEEeCCc---cc-cccccCccCEEEEEec--CCEEEEE
Q 047728 96 GFSPNVLIGSLVREEGHIYSLAAA-----GDLLYTGSDSKNIRVWKNQR---EF-SGFKSNSGLVKAIVIS--NEKIFSG 164 (474)
Q Consensus 96 ~~~~~~~~~~l~~h~~~i~~~~~~-----~~~l~tgs~dg~v~vwd~~~---~~-~~~~~h~~~V~~i~~~--~~~l~s~ 164 (474)
...+...+..+.+|.+.|++++++ |++|++|+.||.|+|||... .+ ..+.+|...|.+++|+ +++|+++
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence 345566777889999999999987 27999999999999999542 33 6778899999999998 6699999
Q ss_pred eCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe--cCCCCEEEEEECCC
Q 047728 165 HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM--SEDQNLLYSASWDK 242 (474)
Q Consensus 165 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~s~dg 242 (474)
+.||.|++||+.+++... +.+|...|.+++| ++++.+|++++.|+
T Consensus 105 ~~dg~v~iwd~~~~~~~~---------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 151 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQ---------------------------------IAQHDAPVKTIHWIKAPNYSCVMTGSWDK 151 (368)
T ss_dssp ETTSEEEEEETTTTEEEE---------------------------------EEECSSCEEEEEEEECSSCEEEEEEETTS
T ss_pred cCCCcEEEEEcCCCCcee---------------------------------eccccCceEEEEEEeCCCCCEEEEccCCC
Confidence 999999999998875432 2349999999999 88999999999999
Q ss_pred cEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC
Q 047728 243 TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA 322 (474)
Q Consensus 243 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 322 (474)
.|++||+++++.+..+..+. .+.++.+.++ .+++++.++.+++|+++..... ...........+.++++.++..
T Consensus 152 ~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 225 (368)
T 3mmy_A 152 TLKFWDTRSSNPMMVLQLPE-RCYCADVIYP-MAVVATAERGLIVYQLENQPSE----FRRIESPLKHQHRCVAIFKDKQ 225 (368)
T ss_dssp EEEEECSSCSSCSEEEECSS-CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEE----EEECCCSCSSCEEEEEEEECTT
T ss_pred cEEEEECCCCcEEEEEecCC-CceEEEecCC-eeEEEeCCCcEEEEEeccccch----hhhccccccCCCceEEEcccCC
Confidence 99999999999998887654 5666766644 7888999999999999754321 1222223444566666665544
Q ss_pred E----EEEEcCCCcEEEeecCccc--ccceeeeecce------------ee--EEEEecCCEEEEEeCCCcEEEEECCCC
Q 047728 323 I----VYCGSSDGLVNFWERELNL--SHGGVLRGHKL------------AI--LCLVTAGNLVFSGSADMSICIWRRKEN 382 (474)
Q Consensus 323 ~----l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~------------~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~ 382 (474)
. +++++.|+.|++||++... .....+..|.. .+ +++++++++|++|+.||.|++||+.++
T Consensus 226 ~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 226 NKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp SCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred CCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 3 9999999999999998763 22344455543 34 556678999999999999999999988
Q ss_pred ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 383 EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 383 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+ ++..+.+|..+|++++|+|++. +|++++.|+..+.|++...
T Consensus 306 ~--~~~~~~~~~~~v~~~~~s~~g~--------~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 306 T--KLKTSEQLDQPISACCFNHNGN--------IFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp E--EEEECCCCSSCEEEEEECTTSS--------CEEEEECCCSTTCGGGCCT
T ss_pred c--EEEEecCCCCCceEEEECCCCC--------eEEEEecccccccccccCC
Confidence 7 5678889999999999999999 8999999987777776544
No 91
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.2e-33 Score=267.77 Aligned_cols=247 Identities=11% Similarity=0.096 Sum_probs=203.9
Q ss_pred cccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC
Q 047728 144 FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD 221 (474)
Q Consensus 144 ~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 221 (474)
+..|...|.+++|+ +++|++++.|+.|++||+.+++.... ..+.+|..
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~------------------------------~~~~~h~~ 53 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV------------------------------HELKEHNG 53 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEE------------------------------EEEECCSS
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEee------------------------------eeecCCCC
Confidence 45589999999998 66999999999999999987642111 13345999
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee--eecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCcee
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV--IAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTK 298 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~ 298 (474)
.|.+++|+|++++|++++.|+.|++||+.+++....+ ..|...|.+++|+|++ .|++++.|+.|++||++.... .
T Consensus 54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~--~ 131 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND--W 131 (372)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT--E
T ss_pred cccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc--c
Confidence 9999999999999999999999999999888755443 5688999999999999 999999999999999986542 1
Q ss_pred eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc-----------------ccccceeeeecceeeEE--EE
Q 047728 299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL-----------------NLSHGGVLRGHKLAILC--LV 359 (474)
Q Consensus 299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~-----------------~~~~~~~~~~~~~~v~~--~~ 359 (474)
.........|...|.+++|+|++++|++++.|+.|++||++. .......+..|...+.+ ++
T Consensus 132 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 211 (372)
T 1k8k_C 132 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 211 (372)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred eeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC
Confidence 112233456788999999999999999999999999999642 11222344466666654 55
Q ss_pred ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 360 TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 360 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
+++++|++++.|+.|++||+++++ ++..+..|..+|.+++|+|++. +|++| .|+.|++|++..
T Consensus 212 ~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~--------~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 212 ANGSRVAWVSHDSTVCLADADKKM--AVATLASETLPLLAVTFITESS--------LVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp SSSSEEEEEETTTEEEEEEGGGTT--EEEEEECSSCCEEEEEEEETTE--------EEEEE-TTSSCEEEEEET
T ss_pred CCCCEEEEEeCCCEEEEEECCCCc--eeEEEccCCCCeEEEEEecCCC--------EEEEE-eCCeEEEEEccC
Confidence 689999999999999999999887 5677889999999999999998 78777 899999999987
No 92
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.4e-33 Score=297.18 Aligned_cols=271 Identities=21% Similarity=0.286 Sum_probs=232.1
Q ss_pred cccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 140 EFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 140 ~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
....+.+|.+.|.+++|+ +.+|++++.||.|++||+.+++... .+.
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~--------------------------------~~~ 52 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR--------------------------------SIQ 52 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--------------------------------EEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE--------------------------------EEe
Confidence 345678999999999998 6799999999999999998875432 234
Q ss_pred eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++ .|++++.||.|++||++....
T Consensus 53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~- 131 (814)
T 3mkq_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA- 131 (814)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE-
T ss_pred cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce-
Confidence 599999999999999999999999999999999999999999999999999999999 899999999999999986532
Q ss_pred eeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecce--eeEEEEe--cCCEEEEEeCC
Q 047728 297 TKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL--AILCLVT--AGNLVFSGSAD 371 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~sgs~d 371 (474)
.......|...|.+++|+| ++..|++++.||.|++||+............+.. ..+++++ ++.+|++|+.|
T Consensus 132 ----~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 207 (814)
T 3mkq_A 132 ----LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207 (814)
T ss_dssp ----EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred ----EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC
Confidence 4556778899999999999 8899999999999999999877665544444434 4466666 89999999999
Q ss_pred CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCC
Q 047728 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHG 451 (474)
Q Consensus 372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 451 (474)
|.|++||+.+++ .+..+.+|...|.+++|+|++. +|++++.||.|++|++.++ .....+..|.
T Consensus 208 g~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~--------~l~~~~~dg~v~vwd~~~~-------~~~~~~~~~~ 270 (814)
T 3mkq_A 208 LTIKIWDYQTKS--CVATLEGHMSNVSFAVFHPTLP--------IIISGSEDGTLKIWNSSTY-------KVEKTLNVGL 270 (814)
T ss_dssp SEEEEEETTTTE--EEEEEECCSSCEEEEEECSSSS--------EEEEEETTSCEEEEETTTC-------SEEEEECCSS
T ss_pred CEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCC--------EEEEEeCCCeEEEEECCCC-------cEEEEeecCC
Confidence 999999999887 5677889999999999999999 9999999999999999876 4455666777
Q ss_pred CCCCccccCCCCCcCCc
Q 047728 452 VAPNSLPYAPSFSSQGR 468 (474)
Q Consensus 452 ~~v~~l~~~p~~s~Dg~ 468 (474)
..+.++ +|+|||+
T Consensus 271 ~~v~~~----~~~~~~~ 283 (814)
T 3mkq_A 271 ERSWCI----ATHPTGR 283 (814)
T ss_dssp SSEEEE----EECTTCG
T ss_pred CcEEEE----EEccCCC
Confidence 777777 4455554
No 93
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.7e-33 Score=269.44 Aligned_cols=278 Identities=17% Similarity=0.201 Sum_probs=218.6
Q ss_pred EEEEcCCE---EEEeeCCCcEEEEeCCc------cccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcce
Q 047728 115 SLAAAGDL---LYTGSDSKNIRVWKNQR------EFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASI 182 (474)
Q Consensus 115 ~~~~~~~~---l~tgs~dg~v~vwd~~~------~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~ 182 (474)
.++++.++ +++|+.||.|+||+..+ .+..+.+|.+.|.+++|+ +++|++|+.||+|++|++..+....
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~ 118 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL 118 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence 35666553 44578899999999643 455678999999999996 5699999999999999998874321
Q ss_pred eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC-CEEEEEECCCcEEEEEcCCcceeeee--e
Q 047728 183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ-NLLYSASWDKTFKVWRTSDYKCLESV--I 259 (474)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~--~ 259 (474)
... .....+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+ .
T Consensus 119 ~~~-------------------------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 173 (402)
T 2aq5_A 119 PLR-------------------------EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD 173 (402)
T ss_dssp CBC-------------------------SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTT
T ss_pred ccC-------------------------CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecC
Confidence 100 0113456699999999999997 69999999999999999999999998 7
Q ss_pred ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeee-eccccc-EEEEEEcCCCCEEEEE---cCCCcE
Q 047728 260 AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL-LKQECA-VTALAISPDAAIVYCG---SSDGLV 333 (474)
Q Consensus 260 ~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~-v~~l~~~~~~~~l~~~---~~dg~i 333 (474)
.|...|.+++|+|++ .|++++.||.|++||++.... ...+ ..|... +.+++|+|++.+|++| +.|+.|
T Consensus 174 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i 247 (402)
T 2aq5_A 174 VHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV------VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQV 247 (402)
T ss_dssp TCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE------EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEE
T ss_pred CCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce------eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceE
Confidence 899999999999999 999999999999999986432 3333 456554 8999999999999999 899999
Q ss_pred EEeecCcccccceeee-ecceee--EEEEecCCEEE-EEeCCCcEEEEECCCCce--EEEEeecCCccceEEEEEeeCCc
Q 047728 334 NFWERELNLSHGGVLR-GHKLAI--LCLVTAGNLVF-SGSADMSICIWRRKENEH--ICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 334 ~v~d~~~~~~~~~~~~-~~~~~v--~~~~~~~~~l~-sgs~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
++||+++......... .+...+ +++++++++|+ +|+.|+.|++||+.+++. ..+..+. |..+|.+++|+|++.
T Consensus 248 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~ 326 (402)
T 2aq5_A 248 ALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRG 326 (402)
T ss_dssp EEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGG
T ss_pred EEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEecccc
Confidence 9999988655333322 344444 56677888886 455799999999998773 2223333 678999999999988
Q ss_pred cccccceEEEEEecCCCcEEEEEccCC
Q 047728 408 SLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 408 ~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
++++ .|+.+++|++.++
T Consensus 327 --------~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 327 --------LEVN--KCEIARFYKLHER 343 (402)
T ss_dssp --------SCGG--GTEEEEEEEEETT
T ss_pred --------ccee--cceeEEEEEcCCC
Confidence 5554 5679999999875
No 94
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-34 Score=276.15 Aligned_cols=264 Identities=13% Similarity=0.057 Sum_probs=203.7
Q ss_pred cCcEEEEEEc--CCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728 110 EGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVG 187 (474)
Q Consensus 110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 187 (474)
+..|.+++++ |+++|+++.|++|+ | .+....+.+|...|.+++|+++- .+ +.|++.+++......
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d-~~~~~~l~gh~~~v~~V~FsPdg-----~~---~~~~~~~~~~~~~~~-- 81 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--Q-PKYAKDINCNSKNLFHVKEFPLE-----FE---NKLDFELAQQNGLLN-- 81 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--E-ECCCSCCSSBGGGTEEEEEECCC-----CC---CTTTTSCCCSSCSST--
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--c-ccccceecCCCccEEEEEECCCC-----Cc---ceEEEEeCCCceEee--
Confidence 4556666655 99999999999999 6 34445558999999999998543 34 445554433211110
Q ss_pred ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCc----
Q 047728 188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD---- 263 (474)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---- 263 (474)
..|...|.+++|+|+|.+|++++.||.|++||.+. ++..+. |..
T Consensus 82 -----------------------------~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 82 -----------------------------SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS 129 (588)
T ss_dssp -----------------------------TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred -----------------------------cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence 12678899999999999999999999999999644 666666 665
Q ss_pred -ceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCcee-eeeeeee----ecccccEEEEEEcCCCCEEEEEcCCCcEEEe
Q 047728 264 -AVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTK-HFFSQTL----LKQECAVTALAISPDAAIVYCGSSDGLVNFW 336 (474)
Q Consensus 264 -~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~----~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~ 336 (474)
.|.+++|+||| .|++|+.||+|++||+..+..... ......+ .+|...|.+++|+|++ +++++.|+.|++|
T Consensus 130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlW 207 (588)
T 2j04_A 130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSM 207 (588)
T ss_dssp TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEE
T ss_pred ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEE
Confidence 49999999999 999999999999999986432111 0112332 5678899999999999 8888999999999
Q ss_pred ecCccccc--ceee-eecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEE--eeCCccccc
Q 047728 337 ERELNLSH--GGVL-RGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAV--EKDDESLSR 411 (474)
Q Consensus 337 d~~~~~~~--~~~~-~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~~~ 411 (474)
|+..+... ...+ .+|...|.++.+.++.|++++ +++|++||+.+++.. ....+|.+.|..++| +|++.
T Consensus 208 d~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~--~~~~gh~~~V~~va~~~s~d~~---- 280 (588)
T 2j04_A 208 TVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSIS--SLKTGSLENFHIIPLNHEKEST---- 280 (588)
T ss_dssp CCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEE--EEECSCCSCCCEEEETTCSSCE----
T ss_pred ECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEE--EEEcCCCceEEEEEeeeCCCCC----
Confidence 99877632 1234 477777766666578999997 699999999988732 223379999999999 99998
Q ss_pred cceEEEEEecCCCcEEEEEcc
Q 047728 412 EKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 412 ~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
.|++++.||+ ++|.+.
T Consensus 281 ----~La~a~edG~-klw~~d 296 (588)
T 2j04_A 281 ----ILLMSNKTSY-KVLLED 296 (588)
T ss_dssp ----EEEECSSCEE-EEEESS
T ss_pred ----EEEEEcCCCC-EEEeec
Confidence 8999999999 999974
No 95
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.4e-33 Score=263.80 Aligned_cols=277 Identities=18% Similarity=0.205 Sum_probs=222.3
Q ss_pred ccccccccCccCEEEEEecC-----CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecc
Q 047728 139 REFSGFKSNSGLVKAIVISN-----EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRN 213 (474)
Q Consensus 139 ~~~~~~~~h~~~V~~i~~~~-----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (474)
+.+..+.+|.+.|.+++|++ ++|++|+.||.|++||+.+......
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~------------------------------ 79 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP------------------------------ 79 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE------------------------------
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE------------------------------
Confidence 45677889999999999983 5899999999999999987332211
Q ss_pred ceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEe--cCCC-eEEEeeCCCcEEEEEc
Q 047728 214 GLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVA--GFDG-LVFTGSADGTVKVWRR 290 (474)
Q Consensus 214 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~--~~~~-~l~~~~~dg~i~iwd~ 290 (474)
..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+. +..|...|.+++| ++++ .|++++.||.|++||+
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 1234599999999999999999999999999999999988766 5679999999999 8888 8999999999999999
Q ss_pred ccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccccee---eeecceeeEEEEecCCE---
Q 047728 291 ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV---LRGHKLAILCLVTAGNL--- 364 (474)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~--- 364 (474)
+.... ...+.. ...+.++.+. ...+++++.++.+.+|+++........ ...+...+.++.++...
T Consensus 159 ~~~~~------~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (368)
T 3mmy_A 159 RSSNP------MMVLQL-PERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPT 229 (368)
T ss_dssp SCSSC------SEEEEC-SSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEE
T ss_pred CCCcE------EEEEec-CCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCC
Confidence 86543 222222 3356666665 458888999999999999876433222 22455666777766544
Q ss_pred -EEEEeCCCcEEEEECCCCce-EEEEeecCCcc------------ceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728 365 -VFSGSADMSICIWRRKENEH-ICLSMLTGHSG------------PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 365 -l~sgs~dg~i~iwd~~~~~~-~~~~~~~~h~~------------~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
+++++.||.|++||++.... ..+..+.+|.. +|++++|+|++. +|++++.||.|++||
T Consensus 230 ~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--------~l~s~~~dg~i~iwd 301 (368)
T 3mmy_A 230 GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG--------TLATVGSDGRFSFWD 301 (368)
T ss_dssp EEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC--------CEEEEETTSCEEEEE
T ss_pred eEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCC--------EEEEEccCCeEEEEE
Confidence 99999999999999987632 23556777776 799999999998 899999999999999
Q ss_pred ccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 431 VSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
+.++ .....+.+|...|.++ +|+|||++|+++|
T Consensus 302 ~~~~-------~~~~~~~~~~~~v~~~----~~s~~g~~l~~~s 334 (368)
T 3mmy_A 302 KDAR-------TKLKTSEQLDQPISAC----CFNHNGNIFAYAS 334 (368)
T ss_dssp TTTT-------EEEEECCCCSSCEEEE----EECTTSSCEEEEE
T ss_pred CCCC-------cEEEEecCCCCCceEE----EECCCCCeEEEEe
Confidence 9876 5566778899999999 7788999988764
No 96
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4e-33 Score=272.06 Aligned_cols=276 Identities=14% Similarity=0.131 Sum_probs=208.8
Q ss_pred cccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728 142 SGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218 (474)
Q Consensus 142 ~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
.....|...|++|+|+ +++|++|+.||+|+|||+..++..... .+.+
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~------------------------------~~~g 162 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI------------------------------KGIG 162 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE------------------------------CCCS
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE------------------------------EccC
Confidence 3456788899999997 458999999999999999877643221 1245
Q ss_pred ccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeee--cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCC
Q 047728 219 HFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIA--HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQG 294 (474)
Q Consensus 219 h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~ 294 (474)
|.+.|++|+|+| ++++|++|+.|++|++||+++......... +...+.+++|++++ +|++|+.||.|++||++..
T Consensus 163 H~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~- 241 (435)
T 4e54_B 163 AGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK- 241 (435)
T ss_dssp SSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-
Confidence 999999999998 789999999999999999987554333322 34467899999999 9999999999999998632
Q ss_pred CceeeeeeeeeecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCcccccce--eeeecceeeEEE--EecCCEEEEEe
Q 047728 295 KGTKHFFSQTLLKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHGG--VLRGHKLAILCL--VTAGNLVFSGS 369 (474)
Q Consensus 295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~--~~~~~~~~v~~~--~~~~~~l~sgs 369 (474)
....+..|...|.+++|+|++. +|++++.|+.|++||++....... ...+|...|.++ ++++++|++|+
T Consensus 242 ------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~ 315 (435)
T 4e54_B 242 ------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD 315 (435)
T ss_dssp ------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred ------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence 2456678999999999999875 788999999999999987654432 234677777654 56899999999
Q ss_pred CCCcEEEEECCCCceEEEEeecCCcc------ceEEEEEeeCCccccccceEEEEEe------------cCCCcEEEEEc
Q 047728 370 ADMSICIWRRKENEHICLSMLTGHSG------PVKCLAVEKDDESLSREKRWILYSG------------SLDKSVKMWRV 431 (474)
Q Consensus 370 ~dg~i~iwd~~~~~~~~~~~~~~h~~------~v~~l~~~~~~~~~~~~~~~~l~s~------------s~Dg~i~vw~~ 431 (474)
.||.|+|||+.+++. ...+..|.. .+..+.|+|++. +++++ ..++.|++||+
T Consensus 316 ~D~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~i~iwd~ 385 (435)
T 4e54_B 316 QKSEIRVYSASQWDC--PLGLIPHPHRHFQHLTPIKAAWHPRYN--------LIVVGRYPDPNFKSCTPYELRTIDVFDG 385 (435)
T ss_dssp SSSCEEEEESSSSSS--EEEECCCCCCCCSSSCCCBCEECSSSS--------CEEEECCCCTTSCCSSTTCCCCEEEECS
T ss_pred CCCEEEEEECCCCcc--ceEEecccccccccceeEEEEEcCCCC--------EEEEEEcCCCCeEEEEecCCCEEEEEEC
Confidence 999999999998763 333433332 233456666665 34333 34568999999
Q ss_pred cCCCCCCCCCccccc-ccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 432 SEQAPPLVSTTQQHP-LEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 432 ~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
.++. .... ..+|...|.++. +|+|||++|++++
T Consensus 386 ~~g~-------~~~~l~~~~~~~v~s~~---~fspdg~~lasg~ 419 (435)
T 4e54_B 386 NSGK-------MMCQLYDPESSGISSLN---EFNPMGDTLASAM 419 (435)
T ss_dssp SSCC-------EEEEECCSSCCCCCCEE---EECTTSSCEEEEC
T ss_pred CCCc-------EEEEEeCCCCCcEEEEE---EECCCCCEEEEEc
Confidence 8873 2233 346777777763 4788999998864
No 97
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-32 Score=265.57 Aligned_cols=267 Identities=18% Similarity=0.269 Sum_probs=219.1
Q ss_pred CEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEec
Q 047728 150 LVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMS 229 (474)
Q Consensus 150 ~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 229 (474)
.+.++.|+++.+++++.||.|++|++.+++...... ..|...|.+++|+
T Consensus 95 ~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~-------------------------------~~~~~~v~~v~~s 143 (401)
T 4aez_A 95 YLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAE-------------------------------TDESTYVASVKWS 143 (401)
T ss_dssp TCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEE-------------------------------CCTTCCEEEEEEC
T ss_pred eEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeee-------------------------------cCCCCCEEEEEEC
Confidence 466788888889999999999999999876543221 1278899999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccc
Q 047728 230 EDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQE 309 (474)
Q Consensus 230 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 309 (474)
|++++|++|+.||.|++||+.+++.+..+..|...|.++.|.+ ..+++++.||.|++||++.... ....+..|.
T Consensus 144 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~ 217 (401)
T 4aez_A 144 HDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANH-----QIGTLQGHS 217 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSC-----EEEEEECCS
T ss_pred CCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcc-----eeeEEcCCC
Confidence 9999999999999999999999999999999999999999953 3999999999999999985443 356677899
Q ss_pred ccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEE--EEecC-CEEEEEe--CCCcEEEEECCCCce
Q 047728 310 CAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILC--LVTAG-NLVFSGS--ADMSICIWRRKENEH 384 (474)
Q Consensus 310 ~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~--~~~~~-~~l~sgs--~dg~i~iwd~~~~~~ 384 (474)
..|.+++|+|++++|++++.|+.|++||+++.... ..+..|...+.+ +++++ .++++|+ .|+.|++||+.+++.
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK-FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR 296 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEE-EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE
T ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCcc-EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE
Confidence 99999999999999999999999999999986554 344567666654 45544 5677765 799999999998873
Q ss_pred EEEEeecCCccceEEEEEeeCCccccccceEEEEE--ecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCC
Q 047728 385 ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS--GSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPS 462 (474)
Q Consensus 385 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s--~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~ 462 (474)
+..+. +...|.+++|+|++. +|++ |+.||.|++|++.++.. .....+.+|...|.++ +
T Consensus 297 --~~~~~-~~~~v~~~~~s~~~~--------~l~~~~g~~dg~i~v~~~~~~~~-----~~~~~~~~h~~~v~~~----~ 356 (401)
T 4aez_A 297 --VNTVD-AGSQVTSLIWSPHSK--------EIMSTHGFPDNNLSIWSYSSSGL-----TKQVDIPAHDTRVLYS----A 356 (401)
T ss_dssp --EEEEE-CSSCEEEEEECSSSS--------EEEEEECTTTCEEEEEEEETTEE-----EEEEEEECCSSCCCEE----E
T ss_pred --EEEEe-CCCcEEEEEECCCCC--------eEEEEeecCCCcEEEEecCCccc-----eeEEEecCCCCCEEEE----E
Confidence 44444 667899999999998 7777 55899999999987532 2333467899999999 6
Q ss_pred CCcCCceeeccC
Q 047728 463 FSSQGRICQKRS 474 (474)
Q Consensus 463 ~s~Dg~~l~~~s 474 (474)
|+|||+++++++
T Consensus 357 ~s~dg~~l~s~~ 368 (401)
T 4aez_A 357 LSPDGRILSTAA 368 (401)
T ss_dssp ECTTSSEEEEEC
T ss_pred ECCCCCEEEEEe
Confidence 677888887754
No 98
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=263.01 Aligned_cols=253 Identities=17% Similarity=0.258 Sum_probs=208.1
Q ss_pred ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecccee
Q 047728 139 REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLW 216 (474)
Q Consensus 139 ~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (474)
+.+..+.+|.+.|.+++|+ +++|++|+.||.|++|++........ ..+
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~------------------------------~~~ 51 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI------------------------------DTL 51 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE------------------------------EEE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceee------------------------------eEe
Confidence 3456788999999999998 67999999999999999975432211 133
Q ss_pred eeccCCeeEEEecCC--CCEEEEEECCCcEEEEEcCCcc--eeeeeeecCcceeEEEecCC--C-eEEEeeCCCcEEEEE
Q 047728 217 IKHFDAISSLSMSED--QNLLYSASWDKTFKVWRTSDYK--CLESVIAHDDAVNSIVAGFD--G-LVFTGSADGTVKVWR 289 (474)
Q Consensus 217 ~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~--~-~l~~~~~dg~i~iwd 289 (474)
.+|...|++++|+++ +++|++++.|+.|++||+.+++ .+..+..|...|.+++|+|+ + .+++++.|+.|++||
T Consensus 52 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d 131 (379)
T 3jrp_A 52 TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 131 (379)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEe
Confidence 459999999999976 8999999999999999999987 77778889999999999998 6 999999999999999
Q ss_pred cccCCCceeeeeeeeeecccccEEEEEEcC-------------CCCEEEEEcCCCcEEEeecCcccc---cceeeeecce
Q 047728 290 RELQGKGTKHFFSQTLLKQECAVTALAISP-------------DAAIVYCGSSDGLVNFWERELNLS---HGGVLRGHKL 353 (474)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-------------~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~ 353 (474)
++..... .......|...|.+++|+| ++.+|++++.|+.|++||++.... ....+.+|..
T Consensus 132 ~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~ 207 (379)
T 3jrp_A 132 FKENGTT----SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 207 (379)
T ss_dssp CCTTSCC----CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred cCCCCce----eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC
Confidence 9865332 2335567889999999999 699999999999999999986643 2234556777
Q ss_pred eeEE--EEec---CCEEEEEeCCCcEEEEECCCCce---EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCc
Q 047728 354 AILC--LVTA---GNLVFSGSADMSICIWRRKENEH---ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKS 425 (474)
Q Consensus 354 ~v~~--~~~~---~~~l~sgs~dg~i~iwd~~~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~ 425 (474)
.+.+ ++++ +++|++++.||.|++||+..+.. ..+.....|...|++++|+|++. +|++++.||.
T Consensus 208 ~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--------~l~~~~~dg~ 279 (379)
T 3jrp_A 208 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN--------VLALSGGDNK 279 (379)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC--------CEEEEESSSS
T ss_pred cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC--------EEEEecCCCc
Confidence 6655 4566 88999999999999999987642 22333445889999999999999 8999999999
Q ss_pred EEEEEccC
Q 047728 426 VKMWRVSE 433 (474)
Q Consensus 426 i~vw~~~~ 433 (474)
|++|++..
T Consensus 280 i~iw~~~~ 287 (379)
T 3jrp_A 280 VTLWKENL 287 (379)
T ss_dssp EEEEEEEE
T ss_pred EEEEeCCC
Confidence 99999974
No 99
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.1e-33 Score=262.72 Aligned_cols=276 Identities=12% Similarity=0.143 Sum_probs=219.7
Q ss_pred ccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc
Q 047728 143 GFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF 220 (474)
Q Consensus 143 ~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 220 (474)
...+|.+.|.+++|+ +++|++++.||.|++|++..+...... ..+.+|.
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~-----------------------------~~~~~~~ 56 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-----------------------------LQSLRYK 56 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE-----------------------------EEEEECS
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccc-----------------------------eeeeecC
Confidence 345799999999998 679999999999999999877521111 1223599
Q ss_pred CCeeEEEecCCCC-EEEEEECCCcEEEEEc-CCcceeeeeee--cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc
Q 047728 221 DAISSLSMSEDQN-LLYSASWDKTFKVWRT-SDYKCLESVIA--HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 221 ~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~-~~~~~~~~~~~--~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
..|.+++|+|+++ +|++++.|+.|++||+ .+++. ..+.. |...|.+++|+|...+++++.|+.|++||++.....
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG 135 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB
T ss_pred CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccc
Confidence 9999999999999 9999999999999999 77654 67778 999999999999339999999999999999851110
Q ss_pred ee---eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc-cccc-ceeeeecceee--EEEEe-cCCEEEEE
Q 047728 297 TK---HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL-NLSH-GGVLRGHKLAI--LCLVT-AGNLVFSG 368 (474)
Q Consensus 297 ~~---~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~-~~~~~~~~~~v--~~~~~-~~~~l~sg 368 (474)
.. ......+ .+...|.+++|+|++ +++++.|+.|++||++. .... ......|...+ +++++ ++++++++
T Consensus 136 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 212 (342)
T 1yfq_A 136 VIAVKNLNSNNT-KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS 212 (342)
T ss_dssp CEEEEESCSSSS-SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred cccccCCeeeEE-eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE
Confidence 00 0012222 378899999999987 88999999999999987 4432 22333455455 55667 88999999
Q ss_pred eCCCcEEEEECCCC------ceEEEEeecCCcc---------ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 369 SADMSICIWRRKEN------EHICLSMLTGHSG---------PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 369 s~dg~i~iwd~~~~------~~~~~~~~~~h~~---------~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
+.||.|++|+++.. + ....+..|.. .|.+++|+|++. +|++++.||.|++||+.+
T Consensus 213 ~~dg~i~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--------~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 213 SIDGRVAVEFFDDQGDDYNSS--KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK--------FLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp ETTSEEEEEECCTTCCSTTCT--TCEEEECCCCCTTCCSSCCCEEEEEECTTTC--------CEEEEETTSCEEEEETTT
T ss_pred ecCCcEEEEEEcCCCcccccc--cceeeecccccccccccceeEEEEEEcCCCC--------EEEEecCCceEEEEcCcc
Confidence 99999999999876 4 3456666755 999999999998 899999999999999988
Q ss_pred CCCCCCCCcccccccCC-CCCCCccccCCCCCcCCceeeccC
Q 047728 434 QAPPLVSTTQQHPLEGH-GVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 434 ~~~~~~~~~~~~~~~~~-~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
+ .....+.+| ...|.+++ |||++++++|
T Consensus 283 ~-------~~~~~~~~~h~~~v~~~~------~~~~~l~s~s 311 (342)
T 1yfq_A 283 R-------KKIKNFAKFNEDSVVKIA------CSDNILCLAT 311 (342)
T ss_dssp T-------EEEEECCCCSSSEEEEEE------ECSSEEEEEE
T ss_pred H-------hHhhhhhcccCCCceEec------CCCCeEEEEe
Confidence 7 455667787 88898884 8999988764
No 100
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.3e-32 Score=264.30 Aligned_cols=266 Identities=21% Similarity=0.292 Sum_probs=216.2
Q ss_pred CEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728 150 LVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM 228 (474)
Q Consensus 150 ~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 228 (474)
.++.|+|+ ++.|++ +.|++|+|||+.+++....... .+|...|++|+|
T Consensus 107 y~~~l~wS~~n~lAv-gld~tV~lWd~~tg~~~~~~~~------------------------------~~~~~~V~sv~f 155 (420)
T 4gga_A 107 YLNLVDWSSGNVLAV-ALDNSVYLWSASSGDILQLLQM------------------------------EQPGEYISSVAW 155 (420)
T ss_dssp TCBCEEECTTSEEEE-EETTEEEEEETTTCCEEEEEEC------------------------------CSTTCCEEEEEE
T ss_pred cceeEEECCCCEEEE-EeCCEEEEEECCCCCEEEEEEe------------------------------cCCCCcEEEEEE
Confidence 45678998 455555 5599999999999876543322 238889999999
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc
Q 047728 229 SEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ 308 (474)
Q Consensus 229 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 308 (474)
+|++++|++|+.|++|++||+++++++..+.+|...+.++.+++. .+++|+.|+.+++||.+.... ....+..|
T Consensus 156 spdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~-~l~sgs~d~~i~~~d~~~~~~-----~~~~~~~h 229 (420)
T 4gga_A 156 IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEH-----HVATLSGH 229 (420)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSC-----EEEEEECC
T ss_pred CCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCC-EEEEEeCCCceeEeeecccce-----eeEEeccc
Confidence 999999999999999999999999999999999999999988643 899999999999999876544 45667889
Q ss_pred cccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc---ceeeeecceeeEEEEe--c-CCEEEEE--eCCCcEEEEECC
Q 047728 309 ECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH---GGVLRGHKLAILCLVT--A-GNLVFSG--SADMSICIWRRK 380 (474)
Q Consensus 309 ~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~~v~~~~~--~-~~~l~sg--s~dg~i~iwd~~ 380 (474)
...+..+.++|++.++++++.|+.+++|+...+... ......|...|.++.+ . ..+++++ +.|+.|++||+.
T Consensus 230 ~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~ 309 (420)
T 4gga_A 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 309 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred ccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence 999999999999999999999999999999776432 2345567777766554 3 5666654 579999999999
Q ss_pred CCceEEEEeecCCccceEEEEEeeCCccccccceEEEEE--ecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccc
Q 047728 381 ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS--GSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLP 458 (474)
Q Consensus 381 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s--~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 458 (474)
+++ +...+.. ...+.++.|++++. .+++ |+.|+.|+|||+.++ .+...+.+|...|.++
T Consensus 310 t~~--~~~~~~~-~~~v~~~~~~~~~~--------~lv~~sg~~d~~I~iwd~~~~-------~~v~~l~gH~~~V~~l- 370 (420)
T 4gga_A 310 SGA--CLSAVDA-HSQVCSILWSPHYK--------ELISGHGFAQNQLVIWKYPTM-------AKVAELKGHTSRVLSL- 370 (420)
T ss_dssp TTE--EEEEEEC-SSCEEEEEEETTTT--------EEEEEECTTTCCEEEEETTTC-------CEEEEECCCSSCEEEE-
T ss_pred ccc--cceeecc-ccceeeeeecCCCC--------eEEEEEecCCCEEEEEECCCC-------cEEEEEcCCCCCEEEE-
Confidence 987 3445554 45789999999988 5554 448999999999887 5667789999999999
Q ss_pred cCCCCCcCCceeeccC
Q 047728 459 YAPSFSSQGRICQKRS 474 (474)
Q Consensus 459 ~~p~~s~Dg~~l~~~s 474 (474)
+|||||++|+++|
T Consensus 371 ---~~spdg~~l~S~s 383 (420)
T 4gga_A 371 ---TMSPDGATVASAA 383 (420)
T ss_dssp ---EECTTSSCEEEEE
T ss_pred ---EEcCCCCEEEEEe
Confidence 6788999998864
No 101
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=9.9e-33 Score=270.11 Aligned_cols=257 Identities=15% Similarity=0.263 Sum_probs=193.9
Q ss_pred cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc---
Q 047728 146 SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF--- 220 (474)
Q Consensus 146 ~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--- 220 (474)
.+.+.|.+++|+ +++|++|+.||.|+||++.+++........ .+ .....+.+|.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~----------------~~-----~~~~~~~~h~~~~ 84 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRG----------------EY-----NVYSTFQSHEPEF 84 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCC----------------CE-----EEEEEEECCCCEE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccc----------------ce-----eEecccccccccc
Confidence 468899999998 679999999999999999876531100000 00 0012344576
Q ss_pred ---------CCeeEEEecCCC--CEEEEEECCCcEEEEEcCCccee----------------------------------
Q 047728 221 ---------DAISSLSMSEDQ--NLLYSASWDKTFKVWRTSDYKCL---------------------------------- 255 (474)
Q Consensus 221 ---------~~V~~l~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~---------------------------------- 255 (474)
..|++++|+|++ .+|++++.|++|++||+.+++..
T Consensus 85 ~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 164 (447)
T 3dw8_B 85 DYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMV 164 (447)
T ss_dssp EGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEE
T ss_pred cccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheee
Confidence 889999999988 79999999999999999764432
Q ss_pred -----ee-eeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeee--eeeeeecccccEEEEEEcCCC-CEEE
Q 047728 256 -----ES-VIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHF--FSQTLLKQECAVTALAISPDA-AIVY 325 (474)
Q Consensus 256 -----~~-~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~v~~l~~~~~~-~~l~ 325 (474)
.. ..+|...|.+++|+|++ .|++| .|+.|++||++......... ....+..|...|.+++|+|++ ++|+
T Consensus 165 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 243 (447)
T 3dw8_B 165 EASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFV 243 (447)
T ss_dssp EEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEE
T ss_pred eccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEE
Confidence 12 35799999999999999 78887 89999999997432211000 011356788999999999998 9999
Q ss_pred EEcCCCcEEEeecCccccc---ceeeeecce------------ee--EEEEecCCEEEEEeCCCcEEEEECCC-CceEEE
Q 047728 326 CGSSDGLVNFWERELNLSH---GGVLRGHKL------------AI--LCLVTAGNLVFSGSADMSICIWRRKE-NEHICL 387 (474)
Q Consensus 326 ~~~~dg~i~v~d~~~~~~~---~~~~~~~~~------------~v--~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~ 387 (474)
+++.||.|++||+++.... ...+..|.. .+ +++++++++|++++. +.|++||++. ++ ++
T Consensus 244 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~--~~ 320 (447)
T 3dw8_B 244 YSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR--PV 320 (447)
T ss_dssp EEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS--CS
T ss_pred EEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc--cc
Confidence 9999999999999887642 345555543 44 556678999999999 9999999986 55 35
Q ss_pred EeecCCccc---------------eEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 388 SMLTGHSGP---------------VKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 388 ~~~~~h~~~---------------v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
..+.+|... +..++|+|++. +|++|+.||.|++||+.++.
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~--------~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS--------VVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS--------EEEEECSTTEEEEEETTTCC
T ss_pred ceeeccccccccccccccccccccceEEEECCCCC--------EEEEeccCCEEEEEEcCCCc
Confidence 667777642 33499999999 89999999999999998764
No 102
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.7e-34 Score=271.70 Aligned_cols=246 Identities=11% Similarity=0.096 Sum_probs=191.4
Q ss_pred cccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC
Q 047728 144 FKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD 221 (474)
Q Consensus 144 ~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 221 (474)
+..+.+.|.+++|+ +++|++++.|+.|++|++.++.... ...+.+|..
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~------------------------------~~~~~~h~~ 56 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKH------------------------------ARTFSDHDK 56 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEE------------------------------CCCBCCCSS
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEE------------------------------EEEEecCCc
Confidence 34567789999998 6799999999999999998762111 023455999
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEEcCCcc---eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCce
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYK---CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~ 297 (474)
.|.+++|+|++++|++++.|++|++||+.+++ ....+..|...|.+++|+|++ .|++++.|+.|++||++.....
T Consensus 57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~- 135 (377)
T 3dwl_C 57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW- 135 (377)
T ss_dssp CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C-
T ss_pred eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc-
Confidence 99999999999999999999999999999877 667778899999999999998 8999999999999999865421
Q ss_pred eeeeeeeeec-ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc-----------------ccceeeeecceeeE--E
Q 047728 298 KHFFSQTLLK-QECAVTALAISPDAAIVYCGSSDGLVNFWERELNL-----------------SHGGVLRGHKLAIL--C 357 (474)
Q Consensus 298 ~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~-----------------~~~~~~~~~~~~v~--~ 357 (474)
.....+.. |...|.+++|+|++++|++++.|+.|++||++... .....+ +|...+. +
T Consensus 136 --~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 212 (377)
T 3dwl_C 136 --WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG 212 (377)
T ss_dssp --CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred --eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence 11334445 89999999999999999999999999999985321 111222 6766665 4
Q ss_pred EEecCCEEEEEeCCCcEEEEECCCCce--EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 358 LVTAGNLVFSGSADMSICIWRRKENEH--ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 358 ~~~~~~~l~sgs~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
+++++++|++++.||.|++||+.+++. ..+..+.+|..+|.+++|+|++. +|++++.|+.+ +|+..
T Consensus 213 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--------~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 213 FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA--------IVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE--------EEEEESSSSEE-EECCC
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC--------EEEEEcCCcEE-EEEeC
Confidence 566899999999999999999998874 12567889999999999999998 89998876655 77665
No 103
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.9e-31 Score=248.54 Aligned_cols=268 Identities=19% Similarity=0.264 Sum_probs=212.8
Q ss_pred EEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC
Q 047728 151 VKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE 230 (474)
Q Consensus 151 V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~ 230 (474)
+++|+|+.+.+++.+.|++|+|||+.+++....... .+|...|++++|+|
T Consensus 28 ~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~------------------------------~~~~~~V~~v~~~~ 77 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQM------------------------------EQPGEYISSVAWIK 77 (318)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEEC------------------------------CSTTCCEEEEEECT
T ss_pred ceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEe------------------------------cCCCCeEEEEEECC
Confidence 467899844344555699999999999876543322 23888999999999
Q ss_pred CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc
Q 047728 231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC 310 (474)
Q Consensus 231 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 310 (474)
++++|++|+.|++|++||+++++++..+.+|...+.++.+.+. .+++++.++.+++|+...... .......|..
T Consensus 78 ~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~-~l~s~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 151 (318)
T 4ggc_A 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEH-----HVATLSGHSQ 151 (318)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSC-----EEEEEECCSS
T ss_pred CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCC-EEEEEecCCceEeeecCCCce-----eEEEEcCccC
Confidence 9999999999999999999999999999999998888776533 899999999999999876544 4566778999
Q ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc---eeeeecceeeEEEEe--c-CCEE--EEEeCCCcEEEEECCCC
Q 047728 311 AVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG---GVLRGHKLAILCLVT--A-GNLV--FSGSADMSICIWRRKEN 382 (474)
Q Consensus 311 ~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~~v~~~~~--~-~~~l--~sgs~dg~i~iwd~~~~ 382 (474)
.+..+.+.+++++|++++.|+.|++||++++.... .....+...+.++.. . ...+ ++++.++.|++||....
T Consensus 152 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~ 231 (318)
T 4ggc_A 152 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG 231 (318)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC
T ss_pred ceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc
Confidence 99999999999999999999999999998765332 233345555555543 3 3333 46678899999999887
Q ss_pred ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCC
Q 047728 383 EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPS 462 (474)
Q Consensus 383 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~ 462 (474)
... ....+...+..+.|++++... ++++|+.|+.|+|||+.++ .+...+.+|...|+++ +
T Consensus 232 ~~~---~~~~~~~~v~~~~~~~~~~~~------~~~sg~~d~~i~iwd~~~~-------~~~~~l~gH~~~V~~l----~ 291 (318)
T 4ggc_A 232 ACL---SAVDAHSQVCSILWSPHYKEL------ISGHGFAQNQLVIWKYPTM-------AKVAELKGHTSRVLSL----T 291 (318)
T ss_dssp CEE---EEEECSSCEEEEEEETTTTEE------EEEECTTTCCEEEEETTTC-------CEEEEECCCSSCEEEE----E
T ss_pred ccc---ccccceeeeeeeeecccccce------EEEEEcCCCEEEEEECCCC-------cEEEEEcCCCCCEEEE----E
Confidence 733 334577789999999998831 2334558999999999887 5667789999999999 6
Q ss_pred CCcCCceeeccC
Q 047728 463 FSSQGRICQKRS 474 (474)
Q Consensus 463 ~s~Dg~~l~~~s 474 (474)
|+|||++|+++|
T Consensus 292 ~spdg~~l~S~s 303 (318)
T 4ggc_A 292 MSPDGATVASAA 303 (318)
T ss_dssp ECTTSSCEEEEE
T ss_pred EcCCCCEEEEEe
Confidence 778999998864
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.2e-32 Score=262.87 Aligned_cols=270 Identities=17% Similarity=0.212 Sum_probs=212.1
Q ss_pred EEEEecCCE---EEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728 152 KAIVISNEK---IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM 228 (474)
Q Consensus 152 ~~i~~~~~~---l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 228 (474)
..++++++. +++++.||.|+||++....... .....+.+|...|++++|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~----------------------------~~~~~~~~h~~~V~~~~~ 89 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD----------------------------KNVPLVCGHTAPVLDIAW 89 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC----------------------------TTCCCBCCCSSCEEEEEE
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC----------------------------CCCceEecCCCCEEEEEe
Confidence 346677554 3357899999999996642210 001234569999999999
Q ss_pred cC-CCCEEEEEECCCcEEEEEcCCc-------ceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCcee
Q 047728 229 SE-DQNLLYSASWDKTFKVWRTSDY-------KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTK 298 (474)
Q Consensus 229 ~~-~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~ 298 (474)
+| ++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++ .|++++.|+.|++||++...
T Consensus 90 ~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~---- 165 (402)
T 2aq5_A 90 CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA---- 165 (402)
T ss_dssp CTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE----
T ss_pred CCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC----
Confidence 99 9999999999999999999987 6678889999999999999996 89999999999999998543
Q ss_pred eeeeeee--ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecce---eeEEEEecCCEEEEE---eC
Q 047728 299 HFFSQTL--LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL---AILCLVTAGNLVFSG---SA 370 (474)
Q Consensus 299 ~~~~~~~--~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~---~v~~~~~~~~~l~sg---s~ 370 (474)
....+ ..|...|.+++|+|++++|++++.|+.|++||++++.........|.. ..+++++++.+|++| +.
T Consensus 166 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~ 243 (402)
T 2aq5_A 166 --AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS 243 (402)
T ss_dssp --EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTC
T ss_pred --ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCC
Confidence 23444 678999999999999999999999999999999987766544356654 346677889999999 79
Q ss_pred CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEE-EecCCCcEEEEEccCCCCCCCCCcccccccC
Q 047728 371 DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY-SGSLDKSVKMWRVSEQAPPLVSTTQQHPLEG 449 (474)
Q Consensus 371 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~-s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~ 449 (474)
|+.|++||+++.+.........|...|.+++|+|++. +|+ +|+.||.|++|++.++.+. ...+..
T Consensus 244 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--------~l~~~g~~dg~i~i~d~~~~~~~------~~~l~~ 309 (402)
T 2aq5_A 244 ERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTN--------IVYLCGKGDSSIRYFEITSEAPF------LHYLSM 309 (402)
T ss_dssp CEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTT--------EEEEEETTCSCEEEEEECSSTTC------EEEEEE
T ss_pred CceEEEEcCccccCCceEEeccCCCceeEEEEcCCCC--------EEEEEEcCCCeEEEEEecCCCcc------eEeecc
Confidence 9999999998765421222335778899999999998 664 6668999999999887431 222222
Q ss_pred --CCCCCCccccCCCCCcCCceeecc
Q 047728 450 --HGVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 450 --~~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
|...+.++ +|+||+++++++
T Consensus 310 ~~~~~~v~~~----~~sp~~~~~~s~ 331 (402)
T 2aq5_A 310 FSSKESQRGM----GYMPKRGLEVNK 331 (402)
T ss_dssp ECCSSCCSEE----EECCGGGSCGGG
T ss_pred cccCCcccce----EEecccccceec
Confidence 55788888 667788887754
No 105
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-32 Score=281.97 Aligned_cols=249 Identities=20% Similarity=0.208 Sum_probs=201.6
Q ss_pred eeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC----ccccccccCccCEEEEEec----CCEEEEEeCCCeEEE
Q 047728 103 IGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ----REFSGFKSNSGLVKAIVIS----NEKIFSGHQDGKIRV 172 (474)
Q Consensus 103 ~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~----~~~l~s~~~dg~i~v 172 (474)
+..+.+|.+.|++++++ +++|++|+.||.|+|||.. +....+.+|.+.|.+++|+ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45678999999999976 8899999999999999854 4566788999999999996 579999999999999
Q ss_pred EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC--CCEEEEEECCCcEEEEEcC
Q 047728 173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED--QNLLYSASWDKTFKVWRTS 250 (474)
Q Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~~ 250 (474)
||+.+++.... ..+.+|...|.+++|+|+ +++|++|+.||.|++||++
T Consensus 82 wd~~~~~~~~~------------------------------~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 82 WKEENGRWSQI------------------------------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp EEEETTEEEEE------------------------------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred EECCCCccccc------------------------------ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 99988642211 123459999999999998 9999999999999999998
Q ss_pred Ccc--eeeeeeecCcceeEEEecCC-------------C-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEE
Q 047728 251 DYK--CLESVIAHDDAVNSIVAGFD-------------G-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTA 314 (474)
Q Consensus 251 ~~~--~~~~~~~~~~~v~~v~~~~~-------------~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 314 (474)
++. ....+..|...|.+++|+|. + .+++|+.||.|++||++.... .......+..|...|++
T Consensus 132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~~~~h~~~V~~ 209 (753)
T 3jro_A 132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWVRD 209 (753)
T ss_dssp SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCEEE
T ss_pred cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc--cceeeeeecCCCCcEEE
Confidence 873 44566789999999999993 5 899999999999999986543 22345667789999999
Q ss_pred EEEcCC---CCEEEEEcCCCcEEEeecCccccc----ceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCc
Q 047728 315 LAISPD---AAIVYCGSSDGLVNFWERELNLSH----GGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENE 383 (474)
Q Consensus 315 l~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~ 383 (474)
++|+|+ +.+|++++.||.|++||++..... ......|...+ +++++++++|++|+.||.|++||+....
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 999999 899999999999999999876321 11223344444 6777899999999999999999998543
No 106
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-31 Score=252.44 Aligned_cols=270 Identities=10% Similarity=0.026 Sum_probs=200.6
Q ss_pred EcCCEEEEeeCCCcEEEEeCCc--cccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCcccee
Q 047728 118 AAGDLLYTGSDSKNIRVWKNQR--EFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDF 195 (474)
Q Consensus 118 ~~~~~l~tgs~dg~v~vwd~~~--~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 195 (474)
+++++|++|+.||+|++||... .+..+. ...|.++.+++. +++++.|++|++|+.+.........
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~---------- 112 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSK---------- 112 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETT----------
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecC----------
Confidence 4588999999999999999553 333333 456777777766 9999999999999887532110000
Q ss_pred eeeecCCCCeEEEeeeccceeeeccCCeeEEEecC--CCCEEEEEECCCcEEEEEcCCcceeeeeee-cCcceeEEEecC
Q 047728 196 IKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE--DQNLLYSASWDKTFKVWRTSDYKCLESVIA-HDDAVNSIVAGF 272 (474)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~ 272 (474)
.... +. ....+|...|.+++|+| ++++|++++.|++|++||+++++++..... |...+.+++|+|
T Consensus 113 ------~~~~--~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p 180 (343)
T 3lrv_A 113 ------TNKV--LR----EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK 180 (343)
T ss_dssp ------TCCE--EE----EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT
T ss_pred ------Ccce--eE----EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC
Confidence 0000 00 11124678999999999 999999999999999999999998766643 456899999999
Q ss_pred CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeec-ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee--
Q 047728 273 DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK-QECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL-- 348 (474)
Q Consensus 273 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-- 348 (474)
++ +|++|+.||.|++||++..... ...+.. |...|++++|+|++.+|++++ |+.|++||+++......+.
T Consensus 181 dg~~lasg~~dg~i~iwd~~~~~~~-----~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~ 254 (343)
T 3lrv_A 181 DSLLLALYSPDGILDVYNLSSPDQA-----SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTY 254 (343)
T ss_dssp TSCEEEEECTTSCEEEEESSCTTSC-----CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCC
T ss_pred CCCEEEEEcCCCEEEEEECCCCCCC-----ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccc
Confidence 99 8999999999999999876541 134455 899999999999999999999 5599999999875542221
Q ss_pred eecce----eeEEEEecCCEEEEEeC-CCcEEEEECCCCceEEEEeecCCccceEEEEEee---CCccccccceEEEEEe
Q 047728 349 RGHKL----AILCLVTAGNLVFSGSA-DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK---DDESLSREKRWILYSG 420 (474)
Q Consensus 349 ~~~~~----~v~~~~~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~---~~~~~~~~~~~~l~s~ 420 (474)
..|.. ..+++++++++|++++. |+.|++|++...... ... .++..++|.+ +.. .++++
T Consensus 255 ~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~--------~l~~~ 320 (343)
T 3lrv_A 255 TIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--WTK----DEESALCLQSDTADFT--------DMDVV 320 (343)
T ss_dssp BC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS--EEE----EEEEECCC----CCCC--------EEEEE
T ss_pred ccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc--eEe----cCceeEecCccccccc--------eeEEE
Confidence 11222 24788889999999998 999999999765422 111 5678888888 666 78888
Q ss_pred cCCCcEEEEEcc
Q 047728 421 SLDKSVKMWRVS 432 (474)
Q Consensus 421 s~Dg~i~vw~~~ 432 (474)
+.||.+.++-..
T Consensus 321 ~~d~~~~~~~~~ 332 (343)
T 3lrv_A 321 CGDGGIAAILKT 332 (343)
T ss_dssp EETTEEEEEEEC
T ss_pred ecCCceEEEEec
Confidence 899999887644
No 107
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.8e-32 Score=259.41 Aligned_cols=276 Identities=10% Similarity=0.102 Sum_probs=200.3
Q ss_pred ccCEEEEEec--CCEEEEEeCCC-------eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728 148 SGLVKAIVIS--NEKIFSGHQDG-------KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218 (474)
Q Consensus 148 ~~~V~~i~~~--~~~l~s~~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
..+|.+++|+ +.+|++|+.|. .|++|+++........... ......+.+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~----------------------~~~~~~l~~ 71 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH----------------------ILSEFALED 71 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE----------------------EEEEEECCT
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeee----------------------eeeEEEccC
Confidence 4579999998 55788887543 5999999876543211110 001123445
Q ss_pred ccCCeeEEEecCCCCEEEEEE-----------CCCcEEEEEcCCcceeee-e--------eecCcceeEEEecCCC-eEE
Q 047728 219 HFDAISSLSMSEDQNLLYSAS-----------WDKTFKVWRTSDYKCLES-V--------IAHDDAVNSIVAGFDG-LVF 277 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s-----------~dg~i~iwd~~~~~~~~~-~--------~~~~~~v~~v~~~~~~-~l~ 277 (474)
|.+.|.+++++ ++.+++|. .|+.+++|++.+...... . ..+...+.+++|+||| +++
T Consensus 72 ~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la 149 (365)
T 4h5i_A 72 NDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAA 149 (365)
T ss_dssp TSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE
T ss_pred CCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEE
Confidence 88889888765 45666653 578899999865432211 1 1244568899999999 544
Q ss_pred --EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc-cceeeeeccee
Q 047728 278 --TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS-HGGVLRGHKLA 354 (474)
Q Consensus 278 --~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~~ 354 (474)
+++.|++|+|||++.... .. ...|...|.+++|+|++++|++++.++ +.+|+..++.. .......|...
T Consensus 150 ~as~~~d~~i~iwd~~~~~~------~~-~~~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~ 221 (365)
T 4h5i_A 150 IASSKVPAIMRIIDPSDLTE------KF-EIETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWS 221 (365)
T ss_dssp EEESCSSCEEEEEETTTTEE------EE-EEECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEE
T ss_pred EEECCCCCEEEEeECCCCcE------EE-EeCCCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCC
Confidence 455799999999975432 22 234777899999999999999998665 55555544433 33344556655
Q ss_pred e--EEEEecCCEEEEEeCCC----cEEEEECCCCceE--EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcE
Q 047728 355 I--LCLVTAGNLVFSGSADM----SICIWRRKENEHI--CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSV 426 (474)
Q Consensus 355 v--~~~~~~~~~l~sgs~dg----~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i 426 (474)
+ ++++++++++++++.|+ .+++|++...... ....+.+|..+|++++|+|+++ +||+|+.|++|
T Consensus 222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~--------~lasgs~D~~V 293 (365)
T 4h5i_A 222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE--------LAVLASNDNSI 293 (365)
T ss_dssp EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC--------EEEEEETTSCE
T ss_pred EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC--------ceEEEcCCCEE
Confidence 5 56778999999999887 6888998766532 2456788999999999999999 99999999999
Q ss_pred EEEEccCCCCCCCCCccccc-ccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 427 KMWRVSEQAPPLVSTTQQHP-LEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 427 ~vw~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
+|||+.++ .+... +.+|...|+++ +|||||++|+++|
T Consensus 294 ~iwd~~~~-------~~~~~~~~gH~~~V~~v----~fSpdg~~laS~S 331 (365)
T 4h5i_A 294 ALVKLKDL-------SMSKIFKQAHSFAITEV----TISPDSTYVASVS 331 (365)
T ss_dssp EEEETTTT-------EEEEEETTSSSSCEEEE----EECTTSCEEEEEE
T ss_pred EEEECCCC-------cEEEEecCcccCCEEEE----EECCCCCEEEEEe
Confidence 99999887 34444 57899999999 7889999999876
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.7e-31 Score=246.76 Aligned_cols=249 Identities=17% Similarity=0.245 Sum_probs=201.3
Q ss_pred ceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc----ceeeeeeecCcceeEEEecC--CC-eEEEeeCCCcEE
Q 047728 214 GLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY----KCLESVIAHDDAVNSIVAGF--DG-LVFTGSADGTVK 286 (474)
Q Consensus 214 ~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~~v~~v~~~~--~~-~l~~~~~dg~i~ 286 (474)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +.+..+..|...|.+++|+| ++ +|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 355679999999999999999999999999999999876 46677788999999999999 45 999999999999
Q ss_pred EEEcccCCCc---eeeeeeeeeecccccEEEEEEcCC--CCEEEEEcCCCcEEEeecCcccccceeee------------
Q 047728 287 VWRRELQGKG---TKHFFSQTLLKQECAVTALAISPD--AAIVYCGSSDGLVNFWERELNLSHGGVLR------------ 349 (474)
Q Consensus 287 iwd~~~~~~~---~~~~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~v~d~~~~~~~~~~~~------------ 349 (474)
+||++..... ........+..|...|.+++|+|+ +.+|++++.|+.|++||+++.........
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999865321 111345666789999999999999 99999999999999999987765433221
Q ss_pred ecceeeEEE--Eec---CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCC----ccccccceEEEEEe
Q 047728 350 GHKLAILCL--VTA---GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDD----ESLSREKRWILYSG 420 (474)
Q Consensus 350 ~~~~~v~~~--~~~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~----~~~~~~~~~~l~s~ 420 (474)
.|...+.++ +++ +.++++++.|+.+.+|+...++...+..+.+|...|++++|+|++ . +|+++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~--------~l~s~ 236 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ--------LIATG 236 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE--------EEEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce--------EEEEE
Confidence 344445444 454 899999999999999998888766678889999999999999998 6 89999
Q ss_pred cCCCcEEEEEccCCCCCCC---------------------------------------CCcccccccCCCCCCCccccCC
Q 047728 421 SLDKSVKMWRVSEQAPPLV---------------------------------------STTQQHPLEGHGVAPNSLPYAP 461 (474)
Q Consensus 421 s~Dg~i~vw~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~v~~l~~~p 461 (474)
+.||.|++||+..+..... .......+.+|...|+++
T Consensus 237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~---- 312 (351)
T 3f3f_A 237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV---- 312 (351)
T ss_dssp ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEE----
T ss_pred cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEE----
Confidence 9999999999987532211 013455677899999999
Q ss_pred CCCcCCceeeccC
Q 047728 462 SFSSQGRICQKRS 474 (474)
Q Consensus 462 ~~s~Dg~~l~~~s 474 (474)
+|+|||++|+++|
T Consensus 313 ~~s~~~~~l~s~~ 325 (351)
T 3f3f_A 313 SWNLTGTILSSAG 325 (351)
T ss_dssp EECSSSCCEEEEE
T ss_pred EEcCCCCEEEEec
Confidence 5677888887753
No 109
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6.6e-31 Score=249.05 Aligned_cols=286 Identities=10% Similarity=0.089 Sum_probs=202.2
Q ss_pred eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEE-EEEeCCCeEEEEec
Q 047728 101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKI-FSGHQDGKIRVWKV 175 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l-~s~~~dg~i~vwd~ 175 (474)
..+..+..|.+.|++++|+ |++|++|+.+| ++||+..........+...+..+.+. ++.+ ++++.|++|++||+
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 3455668899999999987 88999998876 78999664433333222234455554 6655 67888899999999
Q ss_pred CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc-ce
Q 047728 176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY-KC 254 (474)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~~ 254 (474)
.+++..... .+...|.+++|+++. ++++ .|+.|++||+.++ +.
T Consensus 89 ~~~~~~~~~---------------------------------~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~ 132 (355)
T 3vu4_A 89 VKKQDVSRI---------------------------------KVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKR 132 (355)
T ss_dssp TTTEEEEEE---------------------------------ECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCB
T ss_pred CCCcEEEEE---------------------------------ECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCcee
Confidence 887654321 266789999998763 4444 4789999999988 77
Q ss_pred eeeeeecCcceeEEEecCCCeEEE--eeCCCcEEEEEcccCCCc---------eeeee-eeeeecccccEEEEEEcCCCC
Q 047728 255 LESVIAHDDAVNSIVAGFDGLVFT--GSADGTVKVWRRELQGKG---------TKHFF-SQTLLKQECAVTALAISPDAA 322 (474)
Q Consensus 255 ~~~~~~~~~~v~~v~~~~~~~l~~--~~~dg~i~iwd~~~~~~~---------~~~~~-~~~~~~~~~~v~~l~~~~~~~ 322 (474)
+..+.. +...+++++ ..+++ |+.||.|++||++..... ..... ...+.+|...|++++|+|+++
T Consensus 133 ~~~~~~---~~~~~~~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~ 208 (355)
T 3vu4_A 133 ITDDIR---FGGVCEFSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD 208 (355)
T ss_dssp SSCCEE---EEEEEEEET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS
T ss_pred eEEecc---CCceEEEEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC
Confidence 777665 334455666 54444 789999999999864310 00011 456788999999999999999
Q ss_pred EEEEEcCCCc-EEEeecCcccccceeeee-cceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEee--------
Q 047728 323 IVYCGSSDGL-VNFWERELNLSHGGVLRG-HKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSML-------- 390 (474)
Q Consensus 323 ~l~~~~~dg~-i~v~d~~~~~~~~~~~~~-~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-------- 390 (474)
+|++++.|++ |++||++++.....+..+ |...+. ++++++++|++++.|++|++||+..........+
T Consensus 209 ~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T 3vu4_A 209 MVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY 288 (355)
T ss_dssp EEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence 9999999998 999999988776555434 777664 5566899999999999999999976532111111
Q ss_pred -------------cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 391 -------------TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 391 -------------~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
..+..+...++|++++. +|++++.||.+++|++..+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~--------~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 289 FQSEWSLCNFKLSVDKHVRGCKIAWISESS--------LVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCSSCSEEEECCCCTTCCCCEEEESSSSE--------EEEEETTTTEEEEEEEEEET
T ss_pred cccccceeEEEeccCCCCCceEEEEeCCCC--------EEEEEeCCCeEEEEEEEcCC
Confidence 11223347799999998 89999999999999998764
No 110
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.5e-30 Score=249.55 Aligned_cols=298 Identities=17% Similarity=0.200 Sum_probs=224.6
Q ss_pred CCcEEEEe--CCccccccccCccCEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCC
Q 047728 129 SKNIRVWK--NQREFSGFKSNSGLVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPS 203 (474)
Q Consensus 129 dg~v~vwd--~~~~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (474)
++.+++|+ ..+....+.+|.+.|.+++|+ +++|++|+.||.|++|++.++...........
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-------------- 87 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV-------------- 87 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE--------------
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc--------------
Confidence 34566775 456677788899999999997 47999999999999999998765433221110
Q ss_pred CeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC----eEEE
Q 047728 204 NYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG----LVFT 278 (474)
Q Consensus 204 ~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~----~l~~ 278 (474)
.........+|...|.+++|+| ++.+|++++.|+.|++||+.+++.+..+. +...+.++.+.+.+ .+++
T Consensus 88 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (408)
T 4a11_B 88 -----CSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAV 161 (408)
T ss_dssp -----EEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEE
T ss_pred -----ccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEE
Confidence 0000111234999999999999 78899999999999999999998888775 67889999998854 7999
Q ss_pred eeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCcccccceee---------
Q 047728 279 GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHGGVL--------- 348 (474)
Q Consensus 279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~--------- 348 (474)
++.|+.|++||++.... ...+..|...|.+++|+|++. +|++++.||.|++||++........+
T Consensus 162 ~~~~~~v~~~d~~~~~~------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 235 (408)
T 4a11_B 162 GTRGPKVQLCDLKSGSC------SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235 (408)
T ss_dssp EESSSSEEEEESSSSCC------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred EcCCCeEEEEeCCCcce------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce
Confidence 99999999999986543 455667899999999999988 58999999999999998765332222
Q ss_pred ------eecceeeE--EEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC-----ccceEEEEEeeCCccccccceE
Q 047728 349 ------RGHKLAIL--CLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH-----SGPVKCLAVEKDDESLSREKRW 415 (474)
Q Consensus 349 ------~~~~~~v~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~~~~~~~~ 415 (474)
..|...+. ++++++++|++++.||.|++||+.+++... ....+ ...+..........
T Consensus 236 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------- 305 (408)
T 4a11_B 236 AVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTL--VNYGKVCNNSKKGLKFTVSCGCSS-------- 305 (408)
T ss_dssp CTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCC--CCCCCCCCCCSSCCCCEECCSSSS--------
T ss_pred eeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccce--eccccccccccccceeEEecCCCc--------
Confidence 45666664 455689999999999999999999876421 22111 11122122222223
Q ss_pred EEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728 416 ILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 416 ~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
.++.++.|+.|++||+.++ .....+.+|...|.++ +|+|||++|+++
T Consensus 306 ~~~~~~~~~~i~v~d~~~~-------~~~~~~~~~~~~v~~~----~~s~~~~~l~s~ 352 (408)
T 4a11_B 306 EFVFVPYGSTIAVYTVYSG-------EQITMLKGHYKTVDCC----VFQSNFQELYSG 352 (408)
T ss_dssp CEEEEEETTEEEEEETTTC-------CEEEEECCCSSCEEEE----EEETTTTEEEEE
T ss_pred eEEEEecCCEEEEEECcCC-------cceeeeccCCCeEEEE----EEcCCCCEEEEE
Confidence 5777788999999999887 5566788899999999 667788888765
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.2e-29 Score=248.46 Aligned_cols=243 Identities=12% Similarity=0.085 Sum_probs=191.0
Q ss_pred CccCEEEEEec--CCEE-EEEeCCCeEEEEecC--CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC
Q 047728 147 NSGLVKAIVIS--NEKI-FSGHQDGKIRVWKVS--SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD 221 (474)
Q Consensus 147 h~~~V~~i~~~--~~~l-~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 221 (474)
|...|.+++|+ +++| ++++.||.|++|++. +++....... ..|..
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------------------~~~~~ 150 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR------------------------------FCFSK 150 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE------------------------------EECSS
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec------------------------------ccCCC
Confidence 44479999998 5675 899999999999998 5544322111 13778
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee----eeeecCcceeEEEecCC---C-eEEEeeCCCcEEEEEcccC
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE----SVIAHDDAVNSIVAGFD---G-LVFTGSADGTVKVWRRELQ 293 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~v~~v~~~~~---~-~l~~~~~dg~i~iwd~~~~ 293 (474)
.|.+++|+|++++|++|+.|+.|++|++.+++... .+.+|...|.+++|+|+ + +|++++.|+.|++||++..
T Consensus 151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 99999999999999999999999999998877554 78889999999999999 8 8999999999999999865
Q ss_pred CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-----------------------
Q 047728 294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG----------------------- 350 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----------------------- 350 (474)
.. ......+|...|.+++|+ ++++|++++.|+.|++||++++.....+...
T Consensus 231 ~~-----~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
T 2vdu_B 231 FI-----VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND 304 (450)
T ss_dssp TC-----EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred ce-----eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc
Confidence 43 222355789999999999 9999999999999999999887654333211
Q ss_pred -cc--eeeEEEEecCCEEEEEe-CCCcEEEEEC--CCC-ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC-
Q 047728 351 -HK--LAILCLVTAGNLVFSGS-ADMSICIWRR--KEN-EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL- 422 (474)
Q Consensus 351 -~~--~~v~~~~~~~~~l~sgs-~dg~i~iwd~--~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~- 422 (474)
.. ...+++.+++++|++++ .|+.|++|++ ..+ ....+..+..| +.|.+++|+|++. +++.++.
T Consensus 305 ~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~--------~v~~~~~~ 375 (450)
T 2vdu_B 305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEF--------QVTLDNKE 375 (450)
T ss_dssp CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEE--------EEEECCTT
T ss_pred cceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcE--------EEEEeccc
Confidence 11 22355667899999999 8999999999 443 23356677777 8899999999643 4444443
Q ss_pred -----CCcEEEEEccCC
Q 047728 423 -----DKSVKMWRVSEQ 434 (474)
Q Consensus 423 -----Dg~i~vw~~~~~ 434 (474)
+..|.+|.+...
T Consensus 376 ~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 376 SSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp CCSSCCCSEEEEEEETT
T ss_pred CCCCCCcceEEEEEEcC
Confidence 566899988754
No 112
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=7e-31 Score=252.46 Aligned_cols=236 Identities=12% Similarity=0.119 Sum_probs=175.8
Q ss_pred CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-------
Q 047728 158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE------- 230 (474)
Q Consensus 158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~------- 230 (474)
+.+|++++.|++|+|||+..++....... ..+.+|.+.|++++|+|
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~---------------------------~~~~gH~~~v~~v~~~p~~~~~~~ 153 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVL---------------------------GGKSGHHNFVNDIDIADVYSADNR 153 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEE---------------------------CTTTSCSSCEEEEEEEEEECTTCS
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeee---------------------------cccCCCCCceEEEEEccccccccC
Confidence 34799999999999999988765433222 23456999999999997
Q ss_pred -CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeee-------
Q 047728 231 -DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHF------- 300 (474)
Q Consensus 231 -~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~------- 300 (474)
++++|++|+.|++|+|||++++.++..+..|...|.+++|+|++ +|++++.|++|++||++.........
T Consensus 154 ~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~ 233 (393)
T 4gq1_A 154 LAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN 233 (393)
T ss_dssp EEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred CCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence 78999999999999999999988888888999999999999987 79999999999999998654321100
Q ss_pred ------------eeeeeecccccEEEEEEc-CCCCEEEEEcCCCcEEEeecCcccccceeeeecceee------------
Q 047728 301 ------------FSQTLLKQECAVTALAIS-PDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI------------ 355 (474)
Q Consensus 301 ------------~~~~~~~~~~~v~~l~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v------------ 355 (474)
.......|...+.++.|. ++++.|++++.|+.+++||+........ +..|...+
T Consensus 234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNE-ISDSTMKLGPKNLLPNVQGI 312 (393)
T ss_dssp CCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEE
T ss_pred ceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCce-EeeecCccccEEEccccccc
Confidence 011224567788999987 7999999999999999999876543321 11121111
Q ss_pred --------EEEEe--cCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCc
Q 047728 356 --------LCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKS 425 (474)
Q Consensus 356 --------~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~ 425 (474)
.++.+ ++.++++|+.||.|+|||+.+++. ...+..|..+|.+++|+||++ +||+++.||
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--~~~~~~~~~~V~svafspdG~--------~LA~as~~G- 381 (393)
T 4gq1_A 313 SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS--NSIPIQLGMPIVDFCWHQDGS--------HLAIATEGS- 381 (393)
T ss_dssp CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC--CEEEEECSSCEEEEEECTTSS--------EEEEEESSE-
T ss_pred cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE--EEEecCCCCcEEEEEEcCCCC--------EEEEEeCCC-
Confidence 12222 345778888999999999998873 456667889999999999999 999998776
Q ss_pred EEEEEcc
Q 047728 426 VKMWRVS 432 (474)
Q Consensus 426 i~vw~~~ 432 (474)
+.+|++.
T Consensus 382 v~lvrL~ 388 (393)
T 4gq1_A 382 VLLTRLM 388 (393)
T ss_dssp EEEEEEG
T ss_pred eEEEEEe
Confidence 6677764
No 113
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-30 Score=271.68 Aligned_cols=251 Identities=17% Similarity=0.268 Sum_probs=205.5
Q ss_pred cccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728 142 SGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH 219 (474)
Q Consensus 142 ~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 219 (474)
..+.+|.+.|++++|+ +++|++|+.||.|++|++..+..... ..+.+|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~------------------------------~~l~~h 52 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI------------------------------DTLTGH 52 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEE------------------------------EEECCC
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccc------------------------------eeccCC
Confidence 4578999999999998 67999999999999999975432111 234569
Q ss_pred cCCeeEEEecCC--CCEEEEEECCCcEEEEEcCCcc--eeeeeeecCcceeEEEecCC--C-eEEEeeCCCcEEEEEccc
Q 047728 220 FDAISSLSMSED--QNLLYSASWDKTFKVWRTSDYK--CLESVIAHDDAVNSIVAGFD--G-LVFTGSADGTVKVWRREL 292 (474)
Q Consensus 220 ~~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~--~-~l~~~~~dg~i~iwd~~~ 292 (474)
...|++++|+++ +++|++|+.||.|++||+.+++ .+..+..|...|.+++|+|+ + .+++|+.||.|++||++.
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~ 132 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 132 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec
Confidence 999999999987 9999999999999999999887 67778889999999999998 7 999999999999999986
Q ss_pred CCCceeeeeeeeeecccccEEEEEEcC-------------CCCEEEEEcCCCcEEEeecCcccc---cceeeeecceeeE
Q 047728 293 QGKGTKHFFSQTLLKQECAVTALAISP-------------DAAIVYCGSSDGLVNFWERELNLS---HGGVLRGHKLAIL 356 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-------------~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~~v~ 356 (474)
.... .......|...|.+++|+| ++.+|++++.||.|++||++.... ....+.+|...+.
T Consensus 133 ~~~~----~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 208 (753)
T 3jro_A 133 NGTT----SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (753)
T ss_dssp SSCC----CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred CCCc----ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEE
Confidence 5332 2344567889999999999 589999999999999999987642 3344567777775
Q ss_pred EE--Eec---CCEEEEEeCCCcEEEEECCCCceE---EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEE
Q 047728 357 CL--VTA---GNLVFSGSADMSICIWRRKENEHI---CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM 428 (474)
Q Consensus 357 ~~--~~~---~~~l~sgs~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v 428 (474)
++ +++ +.+|++|+.||.|++||+.+++.. .......|...|++++|+|++. +|++++.||.|++
T Consensus 209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~--------~l~s~s~Dg~I~v 280 (753)
T 3jro_A 209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN--------VLALSGGDNKVTL 280 (753)
T ss_dssp EEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC--------CEEEECSSSCEEC
T ss_pred EEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC--------EEEEEcCCCEEEE
Confidence 55 556 889999999999999999876421 1234456889999999999999 8999999999999
Q ss_pred EEccCC
Q 047728 429 WRVSEQ 434 (474)
Q Consensus 429 w~~~~~ 434 (474)
|++...
T Consensus 281 wd~~~~ 286 (753)
T 3jro_A 281 WKENLE 286 (753)
T ss_dssp CBCCSS
T ss_pred EecCCC
Confidence 999853
No 114
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=7.6e-30 Score=248.39 Aligned_cols=261 Identities=18% Similarity=0.214 Sum_probs=206.7
Q ss_pred cccccCccCEEEEEecC---CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728 142 SGFKSNSGLVKAIVISN---EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218 (474)
Q Consensus 142 ~~~~~h~~~V~~i~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
.....|.+.|++++|++ .+|++++.||.|++|++.......... . .......+.+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~-~---------------------~~~~~~~~~~ 179 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS-G---------------------ECQPDLRLRG 179 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTT-C---------------------CCCCSEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCcc-c---------------------cCCCcEEecC
Confidence 34567899999999984 489999999999999998632110000 0 0011124456
Q ss_pred ccCCeeEEEecCCCC-EEEEEECCCcEEEEEcCCcce-------eeeeeecCcceeEEEecCC-C-eEEEeeCCCcEEEE
Q 047728 219 HFDAISSLSMSEDQN-LLYSASWDKTFKVWRTSDYKC-------LESVIAHDDAVNSIVAGFD-G-LVFTGSADGTVKVW 288 (474)
Q Consensus 219 h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~v~~~~~-~-~l~~~~~dg~i~iw 288 (474)
|...|.+++|+|++. +|++|+.||.|++||+.++.. ...+..|...|.+++|+|+ + .|++++.||.|++|
T Consensus 180 h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~ 259 (430)
T 2xyi_A 180 HQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259 (430)
T ss_dssp CSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred CCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence 999999999999888 999999999999999987322 4556689999999999994 4 89999999999999
Q ss_pred EcccCCCceeeeeeeeeecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCcccccceeeeecceeeEEEE--ecC-CE
Q 047728 289 RRELQGKGTKHFFSQTLLKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLV--TAG-NL 364 (474)
Q Consensus 289 d~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~--~~~-~~ 364 (474)
|++...... ....+..|...|++++|+|++. +|++|+.||.|++||++........+..|...+.++. +++ .+
T Consensus 260 d~~~~~~~~---~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 260 DTRNNNTSK---PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI 336 (430)
T ss_dssp ETTCSCSSS---CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTE
T ss_pred ECCCCCCCc---ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCE
Confidence 998653111 2344568889999999999887 7889999999999999986556667777887776655 556 57
Q ss_pred EEEEeCCCcEEEEECCCCc------------eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 365 VFSGSADMSICIWRRKENE------------HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 365 l~sgs~dg~i~iwd~~~~~------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
|++++.|+.|+|||+.... ...+..+.+|...|++++|+|++.. +|++++.||.|+||++.
T Consensus 337 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-------~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 337 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW-------IICSVSEDNIMQVWQMA 409 (430)
T ss_dssp EEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTT-------EEEEEETTSEEEEEEEC
T ss_pred EEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCC-------EEEEEECCCCEEEeEcc
Confidence 9999999999999997621 1256778899999999999999874 79999999999999997
Q ss_pred CC
Q 047728 433 EQ 434 (474)
Q Consensus 433 ~~ 434 (474)
..
T Consensus 410 ~~ 411 (430)
T 2xyi_A 410 EN 411 (430)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.1e-30 Score=250.17 Aligned_cols=228 Identities=16% Similarity=0.135 Sum_probs=183.7
Q ss_pred eeccCCeeEEEecCCCCEE-EEEECCCcEEEEEcC--Ccceeeeee--ecCcceeEEEecCCC-eEEEeeCCCcEEEEEc
Q 047728 217 IKHFDAISSLSMSEDQNLL-YSASWDKTFKVWRTS--DYKCLESVI--AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRR 290 (474)
Q Consensus 217 ~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~ 290 (474)
.+|...|++++|+|++++| ++++.|+.|++||+. +++.+..+. .|...|.+++|+|++ .|++++.+|.|++|++
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 4577889999999999996 889999999999999 888888886 567899999999999 9999999999999998
Q ss_pred ccCCCceeeeeeeeeecccccEEEEEEcCC---CCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEe-cCCEEE
Q 047728 291 ELQGKGTKHFFSQTLLKQECAVTALAISPD---AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVT-AGNLVF 366 (474)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~ 366 (474)
....... .....+..|...|++++|+|+ +++|++++.|+.|++||++++........+|...+.++.+ ++++|+
T Consensus 179 ~~~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~ 256 (450)
T 2vdu_B 179 NSIPEEK--FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLL 256 (450)
T ss_dssp TSCCCSS--CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEE
T ss_pred CCccccc--ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEE
Confidence 7654311 012355678899999999999 9999999999999999999887665556688877766555 799999
Q ss_pred EEeCCCcEEEEECCCCceEEEEeec-------------------------CCccceEEEEEeeCCccccccceEEEEEec
Q 047728 367 SGSADMSICIWRRKENEHICLSMLT-------------------------GHSGPVKCLAVEKDDESLSREKRWILYSGS 421 (474)
Q Consensus 367 sgs~dg~i~iwd~~~~~~~~~~~~~-------------------------~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s 421 (474)
+|+.|+.|++||+.+++.. ..+. .+...|.+++|+|++. +|++++
T Consensus 257 s~~~d~~v~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~--------~l~~~~ 326 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNL--STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP--------FVAFFV 326 (450)
T ss_dssp EEESSSEEEEEETTTCCEE--EEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS--------EEEEEE
T ss_pred EEeCCCeEEEEECCCCcEe--eeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC--------EEEEEE
Confidence 9999999999999988743 3333 2345799999999998 788887
Q ss_pred -CCCcEEEEEc--cCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728 422 -LDKSVKMWRV--SEQAPPLVSTTQQHPLEGHGVAPNSLPYAP 461 (474)
Q Consensus 422 -~Dg~i~vw~~--~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p 461 (474)
.|+.|+||++ ..... ......+..| ..|.+++|+|
T Consensus 327 ~~d~~i~iw~~~~~~~~~----l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 327 EATKCIIILEMSEKQKGD----LALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp TTCSEEEEEEECSSSTTC----EEEEEEEECS-SCEEEEEEET
T ss_pred CCCCeEEEEEeccCCCCc----eeeccEeccC-CceEEEEecC
Confidence 8999999999 33211 1344456666 6788885554
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=8.2e-30 Score=248.16 Aligned_cols=253 Identities=17% Similarity=0.230 Sum_probs=204.4
Q ss_pred ceeeeeeeeecCcEEEEEEc---CCEEEEeeCCCcEEEEeCC------------ccccccccCccCEEEEEec--CC-EE
Q 047728 100 NVLIGSLVREEGHIYSLAAA---GDLLYTGSDSKNIRVWKNQ------------REFSGFKSNSGLVKAIVIS--NE-KI 161 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~---~~~l~tgs~dg~v~vwd~~------------~~~~~~~~h~~~V~~i~~~--~~-~l 161 (474)
...+..+..|.+.|++++++ +++|++|+.||.|++|+.. .....+.+|...|.+++|+ +. +|
T Consensus 118 ~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 197 (430)
T 2xyi_A 118 KIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 197 (430)
T ss_dssp CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEE
T ss_pred ceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeE
Confidence 34456778899999999987 4589999999999999854 3456678999999999998 34 99
Q ss_pred EEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEEC
Q 047728 162 FSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASW 240 (474)
Q Consensus 162 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~ 240 (474)
++|+.||.|++|++.......... .....+.+|...|.+++|+| ++.+|++++.
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~-------------------------~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~ 252 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVI-------------------------DAKNIFTGHTAVVEDVAWHLLHESLFGSVAD 252 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEE-------------------------ECSEEECCCSSCEEEEEECSSCTTEEEEEET
T ss_pred EEEeCCCeEEEEeCCCCCCCCcee-------------------------ccceeecCCCCCEeeeEEeCCCCCEEEEEeC
Confidence 999999999999998753211000 00123446999999999999 7789999999
Q ss_pred CCcEEEEEcCCc---ceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728 241 DKTFKVWRTSDY---KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL 315 (474)
Q Consensus 241 dg~i~iwd~~~~---~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 315 (474)
|+.|++||++++ +.+..+..|...|++++|+|++ .+++|+.||.|++||++.... ....+..|...|.++
T Consensus 253 dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----~~~~~~~h~~~v~~i 327 (430)
T 2xyi_A 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----KLHSFESHKDEIFQV 327 (430)
T ss_dssp TSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----CSEEEECCSSCEEEE
T ss_pred CCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----CeEEeecCCCCEEEE
Confidence 999999999987 5777888999999999999988 688999999999999986443 345666789999999
Q ss_pred EEcCCCC-EEEEEcCCCcEEEeecCccc-------------ccceeeeecceeeEEE--EecCC-EEEEEeCCCcEEEEE
Q 047728 316 AISPDAA-IVYCGSSDGLVNFWERELNL-------------SHGGVLRGHKLAILCL--VTAGN-LVFSGSADMSICIWR 378 (474)
Q Consensus 316 ~~~~~~~-~l~~~~~dg~i~v~d~~~~~-------------~~~~~~~~~~~~v~~~--~~~~~-~l~sgs~dg~i~iwd 378 (474)
+|+|++. +|++++.|+.|++||+.... .......+|...+.++ ++++. +|++++.||.|+||+
T Consensus 328 ~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 9999884 79999999999999998632 2233445677666555 45677 999999999999999
Q ss_pred CCCC
Q 047728 379 RKEN 382 (474)
Q Consensus 379 ~~~~ 382 (474)
+...
T Consensus 408 ~~~~ 411 (430)
T 2xyi_A 408 MAEN 411 (430)
T ss_dssp ECHH
T ss_pred cccc
Confidence 8643
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=5.5e-29 Score=235.87 Aligned_cols=241 Identities=12% Similarity=0.147 Sum_probs=177.1
Q ss_pred CCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccc
Q 047728 137 NQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNG 214 (474)
Q Consensus 137 ~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (474)
..+.+.....|...|.+++|+ +.+|++|+.++ +++|++++.+....
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~------------------------------- 55 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS------------------------------- 55 (355)
T ss_dssp -----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-------------------------------
T ss_pred ccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-------------------------------
Confidence 334555668899999999998 66888887775 88999876543211
Q ss_pred eeeeccCCeeEEEecCCCCEE-EEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccC
Q 047728 215 LWIKHFDAISSLSMSEDQNLL-YSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQ 293 (474)
Q Consensus 215 ~~~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~ 293 (474)
.+...+..+++.++++.+ ++++.|++|++||+.+++++..+. +...|.++.++++..+++ .|+.|++||+...
T Consensus 56 ---~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~--~~~~i~i~d~~~~ 129 (355)
T 3vu4_A 56 ---QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVS--YGDVISVFKFGNP 129 (355)
T ss_dssp ---EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEE--ETTEEEEEESSTT
T ss_pred ---eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEE--EcCEEEEEECCCC
Confidence 122357788888888777 567788999999999999998886 677999999998754332 4889999999865
Q ss_pred CCceeeeeeeeeecccccEEEEEEcCCCCEEEE--EcCCCcEEEeecCcccc--------------c-ceeeeecceeeE
Q 047728 294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYC--GSSDGLVNFWERELNLS--------------H-GGVLRGHKLAIL 356 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~--~~~dg~i~v~d~~~~~~--------------~-~~~~~~~~~~v~ 356 (474)
... ...+.. ....+++++ .++++ |+.||.|++||+++... . ...+.+|...|.
T Consensus 130 ~~~-----~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~ 199 (355)
T 3vu4_A 130 WKR-----ITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK 199 (355)
T ss_dssp CCB-----SSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEE
T ss_pred cee-----eEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE
Confidence 221 111111 344566666 56665 68999999999987541 1 456778888775
Q ss_pred E--EEecCCEEEEEeCCCc-EEEEECCCCceEEEEeec-C-CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728 357 C--LVTAGNLVFSGSADMS-ICIWRRKENEHICLSMLT-G-HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431 (474)
Q Consensus 357 ~--~~~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~-~-h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~ 431 (474)
+ +++++++|++|+.|++ |++||+++++ ++..+. + |...|++++|+|++. +|++++.|++|++||+
T Consensus 200 ~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~--~~~~~~~g~h~~~v~~~~~s~~~~--------~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 200 MVRLNRKSDMVATCSQDGTIIRVFKTEDGV--LVREFRRGLDRADVVDMKWSTDGS--------KLAVVSDKWTLHVFEI 269 (355)
T ss_dssp EEEECTTSSEEEEEETTCSEEEEEETTTCC--EEEEEECTTCCSCEEEEEECTTSC--------EEEEEETTCEEEEEES
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEEcCCCCCcEEEEEECCCCC--------EEEEEECCCEEEEEEc
Confidence 5 4568999999999998 9999999888 456676 5 999999999999999 9999999999999999
Q ss_pred cCCC
Q 047728 432 SEQA 435 (474)
Q Consensus 432 ~~~~ 435 (474)
....
T Consensus 270 ~~~~ 273 (355)
T 3vu4_A 270 FNDQ 273 (355)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 8753
No 118
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=3.5e-29 Score=227.49 Aligned_cols=288 Identities=14% Similarity=0.108 Sum_probs=197.5
Q ss_pred CcceeeeeeeeecCc----EEEEEEc--C--C-EEEEeeCCCcEEEEeCC-----ccccccccCccCEEEEEecCC---E
Q 047728 98 SPNVLIGSLVREEGH----IYSLAAA--G--D-LLYTGSDSKNIRVWKNQ-----REFSGFKSNSGLVKAIVISNE---K 160 (474)
Q Consensus 98 ~~~~~~~~l~~h~~~----i~~~~~~--~--~-~l~tgs~dg~v~vwd~~-----~~~~~~~~h~~~V~~i~~~~~---~ 160 (474)
...+++..|+.-.+. +.++-+. + + .++++++ ..|++|+.. +.+..++.|..+|..|.+.++ .
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 101 (356)
T 2w18_A 23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL 101 (356)
T ss_dssp -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC
T ss_pred ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce
Confidence 445778888876654 3344333 2 2 5677775 579999844 457788899999999999852 3
Q ss_pred EEEEeCC-CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE
Q 047728 161 IFSGHQD-GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS 239 (474)
Q Consensus 161 l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 239 (474)
+..+-.+ ..-.++.+.-.... ... .... .-.+|...|..+ ++++++.+++
T Consensus 102 ~~~~~~~~~~~~v~sla~spd~--------~~~-----------~~~l-------~s~g~~~~v~~l---~~g~lv~ss~ 152 (356)
T 2w18_A 102 VCVALGNLEIREIRALFCSSDD--------ESE-----------KQVL-------LKSGNIKAVLGL---TKRRLVSSSG 152 (356)
T ss_dssp EEEEECSSSEEEEEEECC--------------C-----------CEEE-------EEEEEEEEEEEE---TTTEEEEEES
T ss_pred eeeeeccccccceEEEEECCCc--------ccc-----------ccEE-------EeCCCeEEEEec---CCCcEEEecc
Confidence 3222211 11112221111000 000 0000 001244445554 4555555543
Q ss_pred --CCCcEEEEEc-CCcceeeeeeecCcceeEEEecC---CC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc---c
Q 047728 240 --WDKTFKVWRT-SDYKCLESVIAHDDAVNSIVAGF---DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ---E 309 (474)
Q Consensus 240 --~dg~i~iwd~-~~~~~~~~~~~~~~~v~~v~~~~---~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~ 309 (474)
.|+.|++|++ .+++.+..+..|...+..++|++ ++ .|++++.|++|+|||+++++. ...+.+| .
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~------l~tL~g~~~~v 226 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL------LKKMHIDDSYQ 226 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE------EEEEECCC---
T ss_pred cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE------EEEEcCCCcce
Confidence 5999999999 55888899999999999999998 55 999999999999999987653 3444433 3
Q ss_pred ccEEEEEEcCCCCEE------------EEEcCCCcEEEeecCccccccee----eeecceeeEEEEecCCEEEEEeCCCc
Q 047728 310 CAVTALAISPDAAIV------------YCGSSDGLVNFWERELNLSHGGV----LRGHKLAILCLVTAGNLVFSGSADMS 373 (474)
Q Consensus 310 ~~v~~l~~~~~~~~l------------~~~~~dg~i~v~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~l~sgs~dg~ 373 (474)
..+.+++|+|++.++ ++|+.|++|++||..++...... ..+|....++.+.++.++++|+.|++
T Consensus 227 ~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgT 306 (356)
T 2w18_A 227 ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGT 306 (356)
T ss_dssp CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSC
T ss_pred eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCc
Confidence 467888999999876 56788999999999888655322 23666666677777899999999999
Q ss_pred EEEEECCCCceEEEEeecCCccceE-EEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728 374 ICIWRRKENEHICLSMLTGHSGPVK-CLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431 (474)
Q Consensus 374 i~iwd~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~ 431 (474)
|+|||+.+++ ++.++.+|...+. .++|+||++ +|++|+.|++|+|||+
T Consensus 307 IkIWDl~tGk--~l~tL~gH~~~vvs~vafSPDG~--------~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 307 IAIWDLLLGQ--CTALLPPVSDQHWSFVKWSGTDS--------HLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTTCS--EEEEECCC--CCCCEEEECSSSS--------EEEEECTTSCEEEEEE
T ss_pred EEEEECCCCc--EEEEecCCCCCeEEEEEECCCCC--------EEEEEECCCcEEEecC
Confidence 9999999998 6788889987665 589999999 9999999999999996
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.3e-30 Score=241.83 Aligned_cols=227 Identities=8% Similarity=0.070 Sum_probs=173.3
Q ss_pred CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728 158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS 237 (474)
Q Consensus 158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 237 (474)
+..|++|+.||+|++||+.+++...... ...|.++.|+|+ +++
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----------------------------------~~~v~~~~~~~~---~~s 90 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTIT----------------------------------TPNPRTGGEHPA---IIS 90 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEE----------------------------------EECCCTTCCCCS---EEE
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEe----------------------------------cCCceeeeeCCc---eEE
Confidence 6789999999999999999886543221 345677788887 999
Q ss_pred EECCCcEEEEEcC---------Ccceeeeee-ecCcceeEEEecC--CC-eEEEeeCCCcEEEEEcccCCCceeeeeeee
Q 047728 238 ASWDKTFKVWRTS---------DYKCLESVI-AHDDAVNSIVAGF--DG-LVFTGSADGTVKVWRRELQGKGTKHFFSQT 304 (474)
Q Consensus 238 ~s~dg~i~iwd~~---------~~~~~~~~~-~~~~~v~~v~~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 304 (474)
++.|++|++|+.. +++.+..+. .|...|.+++++| ++ ++++++.||.|++||++.... ....
T Consensus 91 ~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-----~~~~ 165 (343)
T 3lrv_A 91 RGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-----YIVH 165 (343)
T ss_dssp ECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-----EEEE
T ss_pred ecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-----EEEE
Confidence 9999999999765 444444443 5668899999999 88 899999999999999986543 1112
Q ss_pred eecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-cceeeEEE--EecCCEEEEEeCCCcEEEEECCC
Q 047728 305 LLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-HKLAILCL--VTAGNLVFSGSADMSICIWRRKE 381 (474)
Q Consensus 305 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~--~~~~~~l~sgs~dg~i~iwd~~~ 381 (474)
...+...+.+++|+|++.+|++|+.||.|++||++++......+.. |...+.++ ++++.+|++++ |+.|++||+++
T Consensus 166 ~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~ 244 (343)
T 3lrv_A 166 SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRK 244 (343)
T ss_dssp CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTS
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCC
Confidence 2345667999999999999999999999999999988766344555 88777655 55799999999 55999999988
Q ss_pred CceEE-EEeecCCccceE--EEEEeeCCccccccceEEEEEecC-CCcEEEEEccCCC
Q 047728 382 NEHIC-LSMLTGHSGPVK--CLAVEKDDESLSREKRWILYSGSL-DKSVKMWRVSEQA 435 (474)
Q Consensus 382 ~~~~~-~~~~~~h~~~v~--~l~~~~~~~~~~~~~~~~l~s~s~-Dg~i~vw~~~~~~ 435 (474)
.+... +..+..|...+. +++|+|+++ +|++++. |+.|+||++....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 245 DVGTLAYPTYTIPEFKTGTVTYDIDDSGK--------NMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp STTCBSSCCCBC-----CCEEEEECTTSS--------EEEEEETTTTEEEEEEECTTT
T ss_pred CCcceeecccccccccccceEEEECCCCC--------EEEEecCCCCcEEEEEEcccc
Confidence 76321 112222444444 699999999 8999888 9999999997654
No 120
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=9.3e-28 Score=230.58 Aligned_cols=263 Identities=14% Similarity=0.128 Sum_probs=201.7
Q ss_pred CEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEE-EEEeCCCeEEEEecCCCCcceeeeecccCcccee
Q 047728 121 DLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKI-FSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDF 195 (474)
Q Consensus 121 ~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 195 (474)
.++++++.|+.|++||.. +.+..+..|. .+.+++|+ +++| ++++.|+.|++||+.+++......
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~---------- 71 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---------- 71 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE----------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE----------
Confidence 468899999999999954 4455555554 58999998 5555 677799999999998876532211
Q ss_pred eeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC
Q 047728 196 IKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG 274 (474)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~ 274 (474)
+...+.+++|+|++++|++++ .++.|++||+.+++.+..+.. ...+.+++|+|++
T Consensus 72 -----------------------~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg 127 (391)
T 1l0q_A 72 -----------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDG 127 (391)
T ss_dssp -----------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTS
T ss_pred -----------------------CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCC
Confidence 334899999999999886555 679999999999998887765 4568999999998
Q ss_pred -eE-EEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEE-EEEcCCCcEEEeecCcccccceeeeec
Q 047728 275 -LV-FTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIV-YCGSSDGLVNFWERELNLSHGGVLRGH 351 (474)
Q Consensus 275 -~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~ 351 (474)
.+ ++++.++.|++||++.... ...+. ....+.+++|+|+++.| ++++.++.|++||++++..........
T Consensus 128 ~~l~~~~~~~~~v~~~d~~~~~~------~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 200 (391)
T 1l0q_A 128 KKLYVTNNGDKTVSVINTVTKAV------INTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA 200 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEE------EEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred CEEEEEeCCCCEEEEEECCCCcE------EEEEe-cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC
Confidence 45 7888899999999875432 22222 24567999999999887 577889999999998876553333222
Q ss_pred ceeeEEEEecCCEEEEEe---CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEE
Q 047728 352 KLAILCLVTAGNLVFSGS---ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM 428 (474)
Q Consensus 352 ~~~v~~~~~~~~~l~sgs---~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v 428 (474)
....+++++++++|++++ .++.|++||+.+++ .+..+..|. .+.+++|+|+++. ++++++.|+.|++
T Consensus 201 ~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~-~~~~~~~s~dg~~-------l~~s~~~d~~v~v 270 (391)
T 1l0q_A 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK--ITARIPVGP-DPAGIAVTPDGKK-------VYVALSFXNTVSV 270 (391)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE--EEEEEECCS-SEEEEEECTTSSE-------EEEEETTTTEEEE
T ss_pred CccceEECCCCCEEEEEecCcCCCcEEEEECCCCe--EEEEEecCC-CccEEEEccCCCE-------EEEEcCCCCEEEE
Confidence 334466778899999888 68999999999887 345566554 5789999999982 3478899999999
Q ss_pred EEccCCC
Q 047728 429 WRVSEQA 435 (474)
Q Consensus 429 w~~~~~~ 435 (474)
||+.+++
T Consensus 271 ~d~~~~~ 277 (391)
T 1l0q_A 271 IDTATNT 277 (391)
T ss_dssp EETTTTE
T ss_pred EECCCCc
Confidence 9998763
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.4e-27 Score=232.68 Aligned_cols=281 Identities=11% Similarity=0.113 Sum_probs=214.5
Q ss_pred eeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCC--cccc-----ccccCccCEEEEEec--CCEEEEEeCCCe
Q 047728 101 VLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQ--REFS-----GFKSNSGLVKAIVIS--NEKIFSGHQDGK 169 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~--~~~~-----~~~~h~~~V~~i~~~--~~~l~s~~~dg~ 169 (474)
..+..+..+. .+.+++++ +.++++++.++.|++||.. +... .+.+|...|.+++|+ +..+++++.|+.
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 4444554443 34466665 6688888889999999955 3333 456889999999996 668899999999
Q ss_pred EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEEE
Q 047728 170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVWR 248 (474)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd 248 (474)
|++||+++++.... +..|...+.+++|+|+++.+++++ .|+.|++||
T Consensus 193 v~~~d~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d 240 (433)
T 3bws_A 193 VHVFDLKTLAYKAT--------------------------------VDLTGKWSKILLYDPIRDLVYCSNWISEDISVID 240 (433)
T ss_dssp EEEEETTTCCEEEE--------------------------------EECSSSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEECCCceEEEE--------------------------------EcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE
Confidence 99999987654321 223788999999999999886555 799999999
Q ss_pred cCCcceeeeeeecCcceeEEEecCCC-eEEEee--------CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC
Q 047728 249 TSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS--------ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP 319 (474)
Q Consensus 249 ~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 319 (474)
+++++.+..+..+ ..+.+++|+|++ .+++++ .|+.|++||++.... .....+...+.+++|+|
T Consensus 241 ~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~ 312 (433)
T 3bws_A 241 RKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL-------IDTIGPPGNKRHIVSGN 312 (433)
T ss_dssp TTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE-------EEEEEEEECEEEEEECS
T ss_pred CCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE-------EeeccCCCCcceEEECC
Confidence 9999888877654 458999999999 777777 588999999975421 22234455789999999
Q ss_pred CCCEE-EEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeC---------------CCcEEEEECCCCc
Q 047728 320 DAAIV-YCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSA---------------DMSICIWRRKENE 383 (474)
Q Consensus 320 ~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~---------------dg~i~iwd~~~~~ 383 (474)
+++.+ ++++.++.|++||++++..............++++++++++++++. ||.|++||+.+++
T Consensus 313 ~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 313 TENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp STTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred CCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 99755 5668999999999987765544433333445677788998888876 5799999999887
Q ss_pred eEEEEeecCCccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEccC
Q 047728 384 HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRVSE 433 (474)
Q Consensus 384 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~ 433 (474)
. +..+.. ...+.+++|+|+++ +|++++ .|+.|++|++..
T Consensus 393 ~--~~~~~~-~~~~~~~~~s~dg~--------~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 393 V--KEFWEA-GNQPTGLDVSPDNR--------YLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp E--EEEEEC-SSSEEEEEECTTSC--------EEEEEETTTTEEEEEEETT
T ss_pred E--EEEecC-CCCCceEEEcCCCC--------EEEEEECCCCeEEEEEecC
Confidence 3 444544 45799999999998 777665 599999999863
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.1e-29 Score=244.22 Aligned_cols=237 Identities=14% Similarity=0.125 Sum_probs=161.2
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee-----eeeeecCcceeEEEecC--------CC-eEEEeeCCCc
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL-----ESVIAHDDAVNSIVAGF--------DG-LVFTGSADGT 284 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~v~~~~--------~~-~l~~~~~dg~ 284 (474)
|...+....+.+++.+|++++.|++|++||+++++.. ..+.+|.+.|++++|+| ++ +|++++.|++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 5555555666678889999999999999999887653 34578999999999987 56 8999999999
Q ss_pred EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCC-CEEEEEcCCCcEEEeecCccccccee----------------
Q 047728 285 VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDA-AIVYCGSSDGLVNFWERELNLSHGGV---------------- 347 (474)
Q Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~---------------- 347 (474)
|+|||++... .......|...|.+++|+|++ .+|++++.|+.|++||++++......
T Consensus 168 v~~Wd~~~~~------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~ 241 (393)
T 4gq1_A 168 LIIWRLTDEG------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT 241 (393)
T ss_dssp EEEEEEETTE------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred EEEEECCCCc------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence 9999997543 245667788999999999987 58999999999999999876432211
Q ss_pred --------eeecceeeEEE--E-ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcccc------
Q 047728 348 --------LRGHKLAILCL--V-TAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLS------ 410 (474)
Q Consensus 348 --------~~~~~~~v~~~--~-~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~------ 410 (474)
..+|...+.++ . ++++.|++++.|+++++||+..++ ....+..|...+..+.+.|+.....
T Consensus 242 ~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
T 4gq1_A 242 LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN--DYNEISDSTMKLGPKNLLPNVQGISLFPSLL 319 (393)
T ss_dssp GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSS
T ss_pred ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC--CCceEeeecCccccEEEccccccccccCcce
Confidence 12344444333 3 579999999999999999998776 3445566666666666655432110
Q ss_pred ------ccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeeccC
Q 047728 411 ------REKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 411 ------~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~s 474 (474)
...+.++++|+.||.|++||+.++. ....+.+|...|.++ +|||||++|+++|
T Consensus 320 ~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~-------~~~~~~~~~~~V~sv----afspdG~~LA~as 378 (393)
T 4gq1_A 320 GACPHPRYMDYFATAHSQHGLIQLINTYEKD-------SNSIPIQLGMPIVDF----CWHQDGSHLAIAT 378 (393)
T ss_dssp CCEECSSCTTEEEEEETTTTEEEEEETTCTT-------CCEEEEECSSCEEEE----EECTTSSEEEEEE
T ss_pred eEEEccCCCCEEEEEECCCCEEEEEECCCCc-------EEEEecCCCCcEEEE----EEcCCCCEEEEEe
Confidence 1223478899999999999998873 334456788889988 7889999998764
No 123
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.9e-29 Score=238.82 Aligned_cols=249 Identities=10% Similarity=0.029 Sum_probs=188.1
Q ss_pred cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728 146 SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI 223 (474)
Q Consensus 146 ~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 223 (474)
.-...|.+++|+ |.++++++.|++|+ |....+. +.+|...|
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~-----------------------------------l~gh~~~v 55 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD-----------------------------------INCNSKNL 55 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC-----------------------------------CSSBGGGT
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccce-----------------------------------ecCCCccE
Confidence 345788999998 77999999999999 6443322 13499999
Q ss_pred eEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728 224 SSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS 302 (474)
Q Consensus 224 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 302 (474)
.+++|+|+| .++.+.+|+.+.. .+..+ .|...|.+++|+|+| .|++++.||.|++||... ..
T Consensus 56 ~~V~FsPdg-------~~~~~~~~~~~~~-~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--------~l 118 (588)
T 2j04_A 56 FHVKEFPLE-------FENKLDFELAQQN-GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--------ML 118 (588)
T ss_dssp EEEEEECCC-------CCCTTTTSCCCSS-CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--------EE
T ss_pred EEEEECCCC-------CcceEEEEeCCCc-eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--------ee
Confidence 999999998 4666666654322 22232 458899999999999 899999999999999542 22
Q ss_pred eeeecccc-----cEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc------cceee----eecceeeEE--EEecCCEE
Q 047728 303 QTLLKQEC-----AVTALAISPDAAIVYCGSSDGLVNFWERELNLS------HGGVL----RGHKLAILC--LVTAGNLV 365 (474)
Q Consensus 303 ~~~~~~~~-----~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~------~~~~~----~~~~~~v~~--~~~~~~~l 365 (474)
..+. |.. .|.+++|+|+|++|++|+.||+|++||+..+.. ....+ .+|...|.+ ++|+| +
T Consensus 119 ~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--L 195 (588)
T 2j04_A 119 TNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--L 195 (588)
T ss_dssp EECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--E
T ss_pred eecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--E
Confidence 3333 443 599999999999999999999999999988743 12333 456667755 45566 8
Q ss_pred EEEeCCCcEEEEECCCCceE-EEEee-cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcc
Q 047728 366 FSGSADMSICIWRRKENEHI-CLSML-TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQ 443 (474)
Q Consensus 366 ~sgs~dg~i~iwd~~~~~~~-~~~~~-~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~ 443 (474)
++++.|+.|++||+.++... ...++ .+|...|.+++|+ +. +|++++ |++|++|++..+. .
T Consensus 196 aass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~--------~LASa~-~~tIkLWd~~~~~-------~ 257 (588)
T 2j04_A 196 VAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY--------KVVLTC-PGYVHKIDLKNYS-------I 257 (588)
T ss_dssp EEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT--------EEEEEC-SSEEEEEETTTTE-------E
T ss_pred EEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC--------EEEEEe-CCeEEEEECCCCe-------E
Confidence 89999999999999877632 12345 4788999999999 45 788887 6999999998762 2
Q ss_pred cccccCCCCCCCccccCCCC--CcCCceeecc
Q 047728 444 QHPLEGHGVAPNSLPYAPSF--SSQGRICQKR 473 (474)
Q Consensus 444 ~~~~~~~~~~v~~l~~~p~~--s~Dg~~l~~~ 473 (474)
.....+|...+.++ +| +|||+.++++
T Consensus 258 ~~~~~gh~~~V~~v----a~~~s~d~~~La~a 285 (588)
T 2j04_A 258 SSLKTGSLENFHII----PLNHEKESTILLMS 285 (588)
T ss_dssp EEEECSCCSCCCEE----EETTCSSCEEEEEC
T ss_pred EEEEcCCCceEEEE----EeeeCCCCCEEEEE
Confidence 12233799999999 56 8888877765
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=3e-26 Score=220.01 Aligned_cols=293 Identities=14% Similarity=0.153 Sum_probs=210.5
Q ss_pred CcceeeeeeeeecCcEEEEEEc--CCEE-EEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEE-EEeCCCe
Q 047728 98 SPNVLIGSLVREEGHIYSLAAA--GDLL-YTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIF-SGHQDGK 169 (474)
Q Consensus 98 ~~~~~~~~l~~h~~~i~~~~~~--~~~l-~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~-s~~~dg~ 169 (474)
...+++..+..|.. +.+++++ +++| ++++.|+.|++||.. +.+..+..+. .+.+++|+ +++|+ +++.++.
T Consensus 20 ~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~ 97 (391)
T 1l0q_A 20 TSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASST 97 (391)
T ss_dssp TTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCE
Confidence 34466667766654 7888876 6665 678899999999954 4444454444 89999998 55665 5557799
Q ss_pred EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEE-EEEECCCcEEEEE
Q 047728 170 IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLL-YSASWDKTFKVWR 248 (474)
Q Consensus 170 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~dg~i~iwd 248 (474)
|++||+.+++..... .+...+.+++|+|+++.| ++++.|+.|++||
T Consensus 98 v~v~d~~~~~~~~~~---------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 144 (391)
T 1l0q_A 98 LSVIDTTSNTVAGTV---------------------------------KTGKSPLGLALSPDGKKLYVTNNGDKTVSVIN 144 (391)
T ss_dssp EEEEETTTTEEEEEE---------------------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCeEEEEE---------------------------------eCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 999999887543211 144568999999999977 6777899999999
Q ss_pred cCCcceeeeeeecCcceeEEEecCCC-eE-EEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE
Q 047728 249 TSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC 326 (474)
Q Consensus 249 ~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 326 (474)
+.+++.+..+..+ ..+.+++|+|++ .+ ++++.++.|++||++.... .....+...+.+++|+|++++|++
T Consensus 145 ~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~g~~l~~ 216 (391)
T 1l0q_A 145 TVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-------IDTVKVEAAPSGIAVNPEGTKAYV 216 (391)
T ss_dssp TTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-------EEEEECSSEEEEEEECTTSSEEEE
T ss_pred CCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE-------EEEEecCCCccceEECCCCCEEEE
Confidence 9999988888765 456999999999 55 6778899999999975431 222334567899999999999998
Q ss_pred Ec---CCCcEEEeecCcccccceeeeecceeeEEEEecCCEE-EEEeCCCcEEEEECCCCceEEEEeecCCccceE---E
Q 047728 327 GS---SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLV-FSGSADMSICIWRRKENEHICLSMLTGHSGPVK---C 399 (474)
Q Consensus 327 ~~---~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~---~ 399 (474)
++ .++.|++||++++.....+........+++++++++| ++++.|+.|++||+.+++ .+..+..|..+.. .
T Consensus 217 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~--~~~~~~~~~~~~~~~~~ 294 (391)
T 1l0q_A 217 TNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT--ITATMAVGKNPYASGQF 294 (391)
T ss_dssp EEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEECSSSEECCSSC
T ss_pred EecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCc--EEEEEECCcCCCcccee
Confidence 88 6899999999887655433333333346778889877 677889999999999887 3455555544321 1
Q ss_pred EEEeeCCcccc--------------ccceEEEEEecCCCcEEEEEccCCC
Q 047728 400 LAVEKDDESLS--------------REKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 400 l~~~~~~~~~~--------------~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
+.+.|++.... -.....|...+.|..+++|++.++.
T Consensus 295 ~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~ 344 (391)
T 1l0q_A 295 IGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS 344 (391)
T ss_dssp EEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred eecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCc
Confidence 33333221100 0011357778889999999998763
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=8.6e-28 Score=234.08 Aligned_cols=290 Identities=14% Similarity=0.105 Sum_probs=210.7
Q ss_pred EeeCCCcEEEE--eC--C--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceee
Q 047728 125 TGSDSKNIRVW--KN--Q--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFI 196 (474)
Q Consensus 125 tgs~dg~v~vw--d~--~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 196 (474)
+++.++.++|| |. . +.+..+..+ ..+.+++|+ +..+++++.|+.|++||+.+++.......
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------- 162 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP---------- 162 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC----------
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc----------
Confidence 34455544455 43 2 223334333 345588887 34667777888999999998765422111
Q ss_pred eeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-e
Q 047728 197 KCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-L 275 (474)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~ 275 (474)
..+.+|...|.+++|++++.++++++.|+.|++||+++++.+..+..|...+.+++|+|++ .
T Consensus 163 -----------------~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (433)
T 3bws_A 163 -----------------EKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDL 225 (433)
T ss_dssp -----------------HHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTE
T ss_pred -----------------ccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCE
Confidence 1234588899999999999999999999999999999999999999899999999999998 5
Q ss_pred E-EEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc--------CCCcEEEeecCcccccce
Q 047728 276 V-FTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS--------SDGLVNFWERELNLSHGG 346 (474)
Q Consensus 276 l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--------~dg~i~v~d~~~~~~~~~ 346 (474)
+ ++++.|+.|++||++.... ... ......+.+++|+|+++.|++++ .|+.|++||++++.....
T Consensus 226 l~~~~~~~~~i~~~d~~~~~~------~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~ 298 (433)
T 3bws_A 226 VYCSNWISEDISVIDRKTKLE------IRK-TDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT 298 (433)
T ss_dssp EEEEETTTTEEEEEETTTTEE------EEE-CCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred EEEEecCCCcEEEEECCCCcE------EEE-ecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence 5 5666899999999875431 222 22345699999999999999888 588999999987755433
Q ss_pred eeeecceeeEEEEecCCE-EEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC---
Q 047728 347 VLRGHKLAILCLVTAGNL-VFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL--- 422 (474)
Q Consensus 347 ~~~~~~~~v~~~~~~~~~-l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~--- 422 (474)
.........++++++++. +++++.|+.|++||+.+++. +..+. +...+.+++|+|+++ +|++++.
T Consensus 299 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~--~~~~~-~~~~~~~~~~s~dg~--------~l~~~~~~~~ 367 (433)
T 3bws_A 299 IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV--QKSIP-VFDKPNTIALSPDGK--------YLYVSCRGPN 367 (433)
T ss_dssp EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE--EEEEE-CSSSEEEEEECTTSS--------EEEEEECCCC
T ss_pred ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE--EEEec-CCCCCCeEEEcCCCC--------EEEEEecCCC
Confidence 322333344667778865 46668999999999998773 34443 677899999999998 6777665
Q ss_pred ------------CCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728 423 ------------DKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 423 ------------Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
||.|++||+.+++ ....+.. ...+.++ +|+|||+.++.
T Consensus 368 ~~~~~~~~~g~~dg~v~~~d~~~~~-------~~~~~~~-~~~~~~~----~~s~dg~~l~~ 417 (433)
T 3bws_A 368 HPTEGYLKKGLVLGKVYVIDTTTDT-------VKEFWEA-GNQPTGL----DVSPDNRYLVI 417 (433)
T ss_dssp CTTTCTTSCCSSCCEEEEEETTTTE-------EEEEEEC-SSSEEEE----EECTTSCEEEE
T ss_pred ccccccccccccceEEEEEECCCCc-------EEEEecC-CCCCceE----EEcCCCCEEEE
Confidence 6799999998763 3333333 2345566 67888988764
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=3.8e-27 Score=227.78 Aligned_cols=282 Identities=11% Similarity=0.043 Sum_probs=212.5
Q ss_pred CCEEEEee----CCC----cEEEEeC--Cc--cc--cccccCccCEEEEEec----------------CCEEEEEeCC--
Q 047728 120 GDLLYTGS----DSK----NIRVWKN--QR--EF--SGFKSNSGLVKAIVIS----------------NEKIFSGHQD-- 167 (474)
Q Consensus 120 ~~~l~tgs----~dg----~v~vwd~--~~--~~--~~~~~h~~~V~~i~~~----------------~~~l~s~~~d-- 167 (474)
.+++++|+ .+| .|++||. .. .+ ..+.+|...+..+++. +..++.++.+
T Consensus 75 ~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~ 154 (415)
T 2hqs_A 75 IDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNG 154 (415)
T ss_dssp CCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSS
T ss_pred CCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCC
Confidence 34677776 467 8999998 43 33 3467777777666554 5677776664
Q ss_pred ----CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCC-
Q 047728 168 ----GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDK- 242 (474)
Q Consensus 168 ----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg- 242 (474)
+.|++||++..... .+.+|...|.+++|+|++++|++++.++
T Consensus 155 ~~~~~~i~i~d~~g~~~~---------------------------------~l~~~~~~v~~~~~Spdg~~la~~s~~~~ 201 (415)
T 2hqs_A 155 GQFPYELRVSDYDGYNQF---------------------------------VVHRSPQPLMSPAWSPDGSKLAYVTFESG 201 (415)
T ss_dssp SSCCEEEEEEETTSCSCE---------------------------------EEEEESSCEEEEEECTTSSEEEEEECTTS
T ss_pred CCccceEEEEcCCCCCCE---------------------------------EEeCCCCcceeeEEcCCCCEEEEEEecCC
Confidence 79999999754321 2345888999999999999999999885
Q ss_pred --cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEE-EeeCCCc--EEEEEcccCCCceeeeeeeeeecccccEEEEE
Q 047728 243 --TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF-TGSADGT--VKVWRRELQGKGTKHFFSQTLLKQECAVTALA 316 (474)
Q Consensus 243 --~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~ 316 (474)
.|++||+.+++.. .+..|...+.+++|+|++ .|+ +++.++. |++||++... ...+..+...+.+++
T Consensus 202 ~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~ 273 (415)
T 2hqs_A 202 RSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-------IRQVTDGRSNNTEPT 273 (415)
T ss_dssp SCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-------EEECCCCSSCEEEEE
T ss_pred CcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-------EEeCcCCCCcccceE
Confidence 9999999998775 566788899999999999 555 6666665 8899987543 234556778899999
Q ss_pred EcCCCCEEEEEcC-CC--cEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC---CcEEEEECCCCceEEEEee
Q 047728 317 ISPDAAIVYCGSS-DG--LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD---MSICIWRRKENEHICLSML 390 (474)
Q Consensus 317 ~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~ 390 (474)
|+|+++.|++++. ++ .|.+||+.++........++.....+++++|++|++++.+ ..|++||+.+++. ..+
T Consensus 274 ~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---~~l 350 (415)
T 2hqs_A 274 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVL 350 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---EEC
T ss_pred ECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---EEe
Confidence 9999999888776 45 6777888776532212222333446788899999988864 5899999998873 345
Q ss_pred cCCccceEEEEEeeCCccccccceEEEEEecCCC---cEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCC
Q 047728 391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK---SVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPS 462 (474)
Q Consensus 391 ~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~ 462 (474)
..|. .+.+++|+|+++ +|++++.|+ .|++|++..+ ....+..|...|.+++|+|.
T Consensus 351 ~~~~-~~~~~~~spdg~--------~l~~~s~~~~~~~l~~~d~~g~--------~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 351 SSTF-LDETPSLAPNGT--------MVIYSSSQGMGSVLNLVSTDGR--------FKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp CCSS-SCEEEEECTTSS--------EEEEEEEETTEEEEEEEETTSC--------CEEECCCSSSEEEEEEECCC
T ss_pred cCCC-CcCCeEEcCCCC--------EEEEEEcCCCccEEEEEECCCC--------cEEEeeCCCCCCcCCccccc
Confidence 5554 899999999999 788887776 7999998643 45567888889999988775
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=3.4e-26 Score=227.90 Aligned_cols=306 Identities=12% Similarity=0.086 Sum_probs=224.5
Q ss_pred EEEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEec--CCCCcceeeee
Q 047728 113 IYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKV--SSKDASIHKRV 186 (474)
Q Consensus 113 i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~ 186 (474)
+..+.+++.++++++.|++|.+||.. +.+..+..+.. +..++++ +++|++++.|++|++||+ .+.+.....
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i-- 218 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-- 218 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE--
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE--
Confidence 44466778899999999999999954 55666663333 8888887 779999999999999999 554332111
Q ss_pred cccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC----CCCEEEEEE-CCCcEEEEEcCCcceeeeeeec
Q 047728 187 GTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE----DQNLLYSAS-WDKTFKVWRTSDYKCLESVIAH 261 (474)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~----~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~ 261 (474)
.+...+..++|+| ++++|++++ .+++|.+||..+++++..+..+
T Consensus 219 -------------------------------~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~ 267 (543)
T 1nir_A 219 -------------------------------KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 267 (543)
T ss_dssp -------------------------------ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred -------------------------------ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence 1344578999999 999999988 4899999999999998888652
Q ss_pred ----------C-cceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-
Q 047728 262 ----------D-DAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG- 327 (474)
Q Consensus 262 ----------~-~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~- 327 (474)
. ..+..+.+++++ .+++...++.|.+||+....... .....+...+..++|+|++++|+++
T Consensus 268 g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~-----~~~i~~~~~~~~~~~spdg~~l~va~ 342 (543)
T 1nir_A 268 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT-----VTSIGAAPFLHDGGWDSSHRYFMTAA 342 (543)
T ss_dssp EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE-----EEEEECCSSCCCEEECTTSCEEEEEE
T ss_pred CcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce-----eEEeccCcCccCceECCCCCEEEEEe
Confidence 2 268899999987 67788889999999997654311 1122345668889999999987655
Q ss_pred cCCCcEEEeecCcccccceeee---ecceeeEEE-Eec-CCEEEEEe-CCCcEEEEECCC-------CceEEEEeecCCc
Q 047728 328 SSDGLVNFWERELNLSHGGVLR---GHKLAILCL-VTA-GNLVFSGS-ADMSICIWRRKE-------NEHICLSMLTGHS 394 (474)
Q Consensus 328 ~~dg~i~v~d~~~~~~~~~~~~---~~~~~v~~~-~~~-~~~l~sgs-~dg~i~iwd~~~-------~~~~~~~~~~~h~ 394 (474)
..++.|.+||..+++....+.. .|......+ .++ +.+++++. .|++|.+||+.+ .+ ++.++.+|.
T Consensus 343 ~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~--~v~~l~~~g 420 (543)
T 1nir_A 343 NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK--KVAELQGQG 420 (543)
T ss_dssp GGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTS--EEEEEECSC
T ss_pred cCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCe--EEEEEEcCC
Confidence 4688999999998865543332 254333333 566 56666765 689999999987 44 678899999
Q ss_pred cceEEEEEeeCCccccccceEEEEEec-------CCCcEEEEEccCCCCCCCCCcccc---cccCCCCCCCccccCCCCC
Q 047728 395 GPVKCLAVEKDDESLSREKRWILYSGS-------LDKSVKMWRVSEQAPPLVSTTQQH---PLEGHGVAPNSLPYAPSFS 464 (474)
Q Consensus 395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s-------~Dg~i~vw~~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~~p~~s 464 (474)
+.+..++|+|+++ .|++++ .+++|.|||+.+.+..... .... .+..+.. -.+++.|+
T Consensus 421 ~~~~~v~~~pdg~--------~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~-~~v~~~~~~~~~~~----~~~~~~~~ 487 (543)
T 1nir_A 421 GGSLFIKTHPKSS--------HLYVDTTFNPDARISQSVAVFDLKNLDAKYQV-LPIAEWADLGEGAK----RVVQPEYN 487 (543)
T ss_dssp SCCCCEECCTTCC--------EEEECCTTCSSHHHHTCEEEEETTCTTSCCEE-ECHHHHHCCCSSCC----EEEEEEEC
T ss_pred CCceEEEcCCCCC--------cEEEecCCCCCcccCceEEEEECCCCCCCeEE-eechhhcccCCCCC----ceEeccCC
Confidence 8999999999999 888887 2789999999987533110 0011 1223333 34556899
Q ss_pred cCCceeec
Q 047728 465 SQGRICQK 472 (474)
Q Consensus 465 ~Dg~~l~~ 472 (474)
|||+.+..
T Consensus 488 ~~g~~~~~ 495 (543)
T 1nir_A 488 KRGDEVWF 495 (543)
T ss_dssp SSSSEEEE
T ss_pred CCCCEEEE
Confidence 99998763
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=9e-24 Score=192.02 Aligned_cols=205 Identities=13% Similarity=0.065 Sum_probs=138.4
Q ss_pred ccCCeeEEEecCC----CCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEee---CCCcEEEEEcc
Q 047728 219 HFDAISSLSMSED----QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGS---ADGTVKVWRRE 291 (474)
Q Consensus 219 h~~~V~~l~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~---~dg~i~iwd~~ 291 (474)
+...|+.|+++|+ ++.+++++.+ +.+|++. ++.++..+ .|+.|++|++.
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~----------------------~g~lv~ss~~g~d~~V~~~~~s 165 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT----------------------KRRLVSSSGTLSDQQVEVMTFA 165 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEET----------------------TTEEEEEESSSTTCEEEEEEEC
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEecC----------------------CCcEEEecccCCCCcEEEEEEC
Confidence 4445666666666 6666665533 5555443 44333332 37777777774
Q ss_pred cCCCceeeeeeeeeecccccEEEEEEcC---CCCEEEEEcCCCcEEEeecCcccccceeeeecc---eee--EEEEecCC
Q 047728 292 LQGKGTKHFFSQTLLKQECAVTALAISP---DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK---LAI--LCLVTAGN 363 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~---~~v--~~~~~~~~ 363 (474)
..++ .......|...++.++|++ ++..|++++.|++|++||+++++.+..+ .+|. ..+ .+|+|++.
T Consensus 166 ~dG~-----~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL-~g~~~~v~~v~~vafSpdG~ 239 (356)
T 2w18_A 166 EDGG-----GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKM-HIDDSYQASVCHKAYSEMGL 239 (356)
T ss_dssp TTSC-----EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEE-ECCC---CCCEEEEEEETTE
T ss_pred CCCc-----eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEE-cCCCcceeeeEEEEECCCCC
Confidence 4332 2345557777888889998 7899999999999999999998766544 3332 122 46888888
Q ss_pred EE------------EEEeCCCcEEEEECCCCceEEEEe---ecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEE
Q 047728 364 LV------------FSGSADMSICIWRRKENEHICLSM---LTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM 428 (474)
Q Consensus 364 ~l------------~sgs~dg~i~iwd~~~~~~~~~~~---~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v 428 (474)
++ ++|+.|++|++||..+++...+.. ..+|...+.+..++ +. ++++++.|++|+|
T Consensus 240 ~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~--------~lASgS~DgTIkI 309 (356)
T 2w18_A 240 LFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH--------CAAAILTSGTIAI 309 (356)
T ss_dssp EEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT--------EEEEEETTSCEEE
T ss_pred EEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC--------EEEEEcCCCcEEE
Confidence 76 668899999999999887432222 14777665544444 55 8999999999999
Q ss_pred EEccCCCCCCCCCcccccccCCCCCCCc-cccCCCCCcCCceeeccC
Q 047728 429 WRVSEQAPPLVSTTQQHPLEGHGVAPNS-LPYAPSFSSQGRICQKRS 474 (474)
Q Consensus 429 w~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~p~~s~Dg~~l~~~s 474 (474)
||+.++ ++.+.+.+|...+.+ + +|||||++|+++|
T Consensus 310 WDl~tG-------k~l~tL~gH~~~vvs~v----afSPDG~~LaSGS 345 (356)
T 2w18_A 310 WDLLLG-------QCTALLPPVSDQHWSFV----KWSGTDSHLLAGQ 345 (356)
T ss_dssp EETTTC-------SEEEEECCC--CCCCEE----EECSSSSEEEEEC
T ss_pred EECCCC-------cEEEEecCCCCCeEEEE----EECCCCCEEEEEE
Confidence 999988 667778888876654 6 7889999999876
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.3e-23 Score=203.04 Aligned_cols=259 Identities=11% Similarity=-0.039 Sum_probs=197.2
Q ss_pred eeeeeecCcEEEEEEc----------------CCEEEEeeCC------CcEEEEeCC-ccccccccCccCEEEEEec--C
Q 047728 104 GSLVREEGHIYSLAAA----------------GDLLYTGSDS------KNIRVWKNQ-REFSGFKSNSGLVKAIVIS--N 158 (474)
Q Consensus 104 ~~l~~h~~~i~~~~~~----------------~~~l~tgs~d------g~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~ 158 (474)
..+.+|...+.++++. +..++.++.+ +.|++||.. .....+..|...|.+++|+ +
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg 190 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDG 190 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTS
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCC
Confidence 4577787777665543 5666666554 799999955 4566778899999999998 6
Q ss_pred CEEEEEeCCC---eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEE
Q 047728 159 EKIFSGHQDG---KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLL 235 (474)
Q Consensus 159 ~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l 235 (474)
++|++++.++ .|++||+.+++... +..|...+.+++|+|+++.|
T Consensus 191 ~~la~~s~~~~~~~i~~~d~~tg~~~~---------------------------------l~~~~~~~~~~~~spdg~~l 237 (415)
T 2hqs_A 191 SKLAYVTFESGRSALVIQTLANGAVRQ---------------------------------VASFPRHNGAPAFSPDGSKL 237 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEEE---------------------------------EECCSSCEEEEEECTTSSEE
T ss_pred CEEEEEEecCCCcEEEEEECCCCcEEE---------------------------------eecCCCcccCEEEcCCCCEE
Confidence 7899999885 99999999876421 22377789999999999988
Q ss_pred E-EEECCCc--EEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeC-CC--cEEEEEcccCCCceeeeeeeeeecc
Q 047728 236 Y-SASWDKT--FKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA-DG--TVKVWRRELQGKGTKHFFSQTLLKQ 308 (474)
Q Consensus 236 ~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~ 308 (474)
+ +++.++. |++||+.+++. ..+..|...+.+++|+|++ .|++++. ++ .|.+||+..... ..+..+
T Consensus 238 a~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-------~~l~~~ 309 (415)
T 2hqs_A 238 AFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-------QRITWE 309 (415)
T ss_dssp EEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-------EECCCS
T ss_pred EEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-------EEEecC
Confidence 7 6666655 99999988775 5667788899999999999 6776665 45 566667764431 223345
Q ss_pred cccEEEEEEcCCCCEEEEEcCC---CcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCC---cEEEEECCCC
Q 047728 309 ECAVTALAISPDAAIVYCGSSD---GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADM---SICIWRRKEN 382 (474)
Q Consensus 309 ~~~v~~l~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg---~i~iwd~~~~ 382 (474)
...+.+++|+|++++|++++.+ ..|.+||+.++... .+.........+++|+|++|++++.++ .|++||+..+
T Consensus 310 ~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 310 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 6678999999999999988764 58999999877543 222223345577888999999988877 7999999866
Q ss_pred ceEEEEeecCCccceEEEEEeeCCc
Q 047728 383 EHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 383 ~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
. ...+..|.+.|.+++|+|...
T Consensus 389 ~---~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 389 F---KARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp C---EEECCCSSSEEEEEEECCCCC
T ss_pred c---EEEeeCCCCCCcCCccccccc
Confidence 5 567888999999999999754
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=2.1e-22 Score=188.59 Aligned_cols=271 Identities=8% Similarity=0.133 Sum_probs=190.8
Q ss_pred CCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeC-CCeEEEEecCCCCc-ceeeeecccCccc
Q 047728 120 GDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQ-DGKIRVWKVSSKDA-SIHKRVGTLPTFK 193 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~ 193 (474)
+.++++++.++.|++||.. +....+..+...+ .++|+ ++++++++. ++.|.+||+.+++. ...
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~---------- 78 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA---------- 78 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE----------
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe----------
Confidence 4467888889999999954 4444555555566 88887 556666655 89999999988765 211
Q ss_pred eeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCC---cEEEEEcCCcceeeeeeecCcceeEEEe
Q 047728 194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDK---TFKVWRTSDYKCLESVIAHDDAVNSIVA 270 (474)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~v~~v~~ 270 (474)
+..+..+..+++|+|++++|+++..++ .|.+||+.+++.+..+.. ...+.+++|
T Consensus 79 ----------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~ 135 (331)
T 3u4y_A 79 ----------------------IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAI 135 (331)
T ss_dssp ----------------------EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEE
T ss_pred ----------------------cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEE
Confidence 122445555599999999999555553 899999999998887765 445689999
Q ss_pred cCCC-eEE-EeeCCCc-EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE-EcCCCcEEEeecCcccc---
Q 047728 271 GFDG-LVF-TGSADGT-VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC-GSSDGLVNFWERELNLS--- 343 (474)
Q Consensus 271 ~~~~-~l~-~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~v~d~~~~~~--- 343 (474)
+|++ .++ +...++. |.+|++...+...... .........+..++|+|+++++++ +..++.|.+||+.++..
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~ 213 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTG--QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITL 213 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred CCCCCEEEEEecCCCceEEEEEECCCCcEeecC--CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccce
Confidence 9999 444 4455688 9999988543321111 222244556899999999996655 45688999999987765
Q ss_pred cceeeeecceeeEEEEecCCEEEEEe-CCCcEEEEECCCCceEEEEeecCC----ccc---eEEEEEeeCCccccccceE
Q 047728 344 HGGVLRGHKLAILCLVTAGNLVFSGS-ADMSICIWRRKENEHICLSMLTGH----SGP---VKCLAVEKDDESLSREKRW 415 (474)
Q Consensus 344 ~~~~~~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~h----~~~---v~~l~~~~~~~~~~~~~~~ 415 (474)
...+..+....-+++++++++++++. .++.|.+||..+++...+..+..+ ..+ ...++|+|+++
T Consensus 214 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-------- 285 (331)
T 3u4y_A 214 LNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTET-------- 285 (331)
T ss_dssp EEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSS--------
T ss_pred eeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCC--------
Confidence 43333333344578899999776655 578899999998875334443322 222 35689999998
Q ss_pred EE-EEecCCCcEEEEEccCC
Q 047728 416 IL-YSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 416 ~l-~s~s~Dg~i~vw~~~~~ 434 (474)
+| +++..++.|++|++...
T Consensus 286 ~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 286 KLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEEEEETTTTEEEEEETTSC
T ss_pred EEEEecCCCCcEEEEEecCC
Confidence 55 55566779999999865
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.5e-22 Score=190.27 Aligned_cols=271 Identities=11% Similarity=0.203 Sum_probs=183.2
Q ss_pred EEEEeeCCCcEEEEeCC--c--cccccccCccCEEEEEec--CCEEEEEeCC-CeEEEEecC--CCCcceeeeecccCcc
Q 047728 122 LLYTGSDSKNIRVWKNQ--R--EFSGFKSNSGLVKAIVIS--NEKIFSGHQD-GKIRVWKVS--SKDASIHKRVGTLPTF 192 (474)
Q Consensus 122 ~l~tgs~dg~v~vwd~~--~--~~~~~~~h~~~V~~i~~~--~~~l~s~~~d-g~i~vwd~~--~~~~~~~~~~~~~~~~ 192 (474)
++++++.|+.|++|+.. . .......+...+.+++|+ +++|++++.+ +.|++|+++ +++.......
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~------ 80 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES------ 80 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc------
Confidence 44555789999999863 2 122223567788889997 6678888876 999999998 3332211111
Q ss_pred ceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC-CCcEEEEEcC---CcceeeeeeecCcceeEE
Q 047728 193 KDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW-DKTFKVWRTS---DYKCLESVIAHDDAVNSI 268 (474)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~v 268 (474)
. ....+.+++|+|++++|++++. ++.|.+||+. ..+.+..+.. ...+.++
T Consensus 81 ------------------------~-~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~ 134 (343)
T 1ri6_A 81 ------------------------A-LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSA 134 (343)
T ss_dssp ------------------------E-CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCC
T ss_pred ------------------------c-cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEE
Confidence 1 1237889999999998877765 8889999994 3444444443 3458899
Q ss_pred EecCCC-eEEEee-CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCc--ccc
Q 047728 269 VAGFDG-LVFTGS-ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWEREL--NLS 343 (474)
Q Consensus 269 ~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~--~~~ 343 (474)
+|+|++ .+++++ .++.|++||+.....................+..++|+|++++++++ ..++.|.+||++. +..
T Consensus 135 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~ 214 (343)
T 1ri6_A 135 NISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI 214 (343)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred EECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence 999999 666666 89999999997533211110001222234578899999999977655 4789999999954 211
Q ss_pred c-ceeee----ec----ceeeEEEEecCCEEEE-EeCCCcEEEEECC--CCceEEEEeecCCccceEEEEEeeCCccccc
Q 047728 344 H-GGVLR----GH----KLAILCLVTAGNLVFS-GSADMSICIWRRK--ENEHICLSMLTGHSGPVKCLAVEKDDESLSR 411 (474)
Q Consensus 344 ~-~~~~~----~~----~~~v~~~~~~~~~l~s-gs~dg~i~iwd~~--~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 411 (474)
. ..... ++ ....+++++++++|++ +..++.|.+||+. ++....+..+..+.. +.+++|+|+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~---- 289 (343)
T 1ri6_A 215 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGK---- 289 (343)
T ss_dssp EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSS----
T ss_pred EEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCC----
Confidence 1 11111 11 1123778888988775 4478999999998 444334555555544 89999999998
Q ss_pred cceEEEEEec-CCCcEEEEEccC
Q 047728 412 EKRWILYSGS-LDKSVKMWRVSE 433 (474)
Q Consensus 412 ~~~~~l~s~s-~Dg~i~vw~~~~ 433 (474)
+|++++ .|+.|.+|++..
T Consensus 290 ----~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 290 ----YLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp ----EEEEECTTTCEEEEEEEET
T ss_pred ----EEEEecCCCCeEEEEEEcC
Confidence 666666 689999997763
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=5.1e-23 Score=214.32 Aligned_cols=300 Identities=9% Similarity=0.051 Sum_probs=209.6
Q ss_pred cEEEEEE--cCCEEEEeeC-CC-----cEEEEeCC--ccccccccCc------------------------cCEEEEEec
Q 047728 112 HIYSLAA--AGDLLYTGSD-SK-----NIRVWKNQ--REFSGFKSNS------------------------GLVKAIVIS 157 (474)
Q Consensus 112 ~i~~~~~--~~~~l~tgs~-dg-----~v~vwd~~--~~~~~~~~h~------------------------~~V~~i~~~ 157 (474)
.|.++++ +|++|++++. |+ .|++||.. +....+..+. ..|.+++|+
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 4666555 5899999998 88 89999954 2223333222 237788888
Q ss_pred --CCEEEEEeCCCeEEEEecCCC---CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC
Q 047728 158 --NEKIFSGHQDGKIRVWKVSSK---DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ 232 (474)
Q Consensus 158 --~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 232 (474)
+++|++++. +.|++||+.++ ... .+..|...+.+++|+|||
T Consensus 118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~---------------------------------~l~~~~~~~~~~~~SPDG 163 (741)
T 2ecf_A 118 PDAQRLLFPLG-GELYLYDLKQEGKAAVR---------------------------------QLTHGEGFATDAKLSPKG 163 (741)
T ss_dssp TTSSEEEEEET-TEEEEEESSSCSTTSCC---------------------------------BCCCSSSCEEEEEECTTS
T ss_pred CCCCEEEEEeC-CcEEEEECCCCCcceEE---------------------------------EcccCCcccccccCCCCC
Confidence 668888886 89999999887 322 122367789999999999
Q ss_pred CEEEEEECCCcEEEEEcCCcceeeeeeecCcc----------------eeEEEecCCC-eEEEeeCCC------------
Q 047728 233 NLLYSASWDKTFKVWRTSDYKCLESVIAHDDA----------------VNSIVAGFDG-LVFTGSADG------------ 283 (474)
Q Consensus 233 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----------------v~~v~~~~~~-~l~~~~~dg------------ 283 (474)
++|+.++ ++.|++||+.+++.......+... +..+.|+||| .|++++.|+
T Consensus 164 ~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~ 242 (741)
T 2ecf_A 164 GFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVY 242 (741)
T ss_dssp SEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEEC
T ss_pred CEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCC
Confidence 9999887 468999999988766554443332 4789999999 788777665
Q ss_pred ---------------------cEEEEEccc-CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-----CCcEEEe
Q 047728 284 ---------------------TVKVWRREL-QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-----DGLVNFW 336 (474)
Q Consensus 284 ---------------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-----dg~i~v~ 336 (474)
.|.+||+.. +... .......+...+..++| ||++.|++++. +..|++|
T Consensus 243 p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~ 317 (741)
T 2ecf_A 243 ADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQ----WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEV 317 (741)
T ss_dssp SSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCE----EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEE
T ss_pred CCcccceEeecCCCCCCCCeeEEEEEECCCCCceE----EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEE
Confidence 788888875 4321 01111246778999999 99999987654 5679999
Q ss_pred ecCcccccceeeeecce------eeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEE-EEeeCCccc
Q 047728 337 ERELNLSHGGVLRGHKL------AILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCL-AVEKDDESL 409 (474)
Q Consensus 337 d~~~~~~~~~~~~~~~~------~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~ 409 (474)
|+.++... .....+.. ....++++|+++++++.||.++||.+..... ...+..|...|..+ .|+|+++.
T Consensus 318 d~~~g~~~-~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~--~~~l~~~~~~v~~~~~~s~dg~~- 393 (741)
T 2ecf_A 318 TLASNQQR-VLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK--AAALTHGNWSVDELLAVDEKAGL- 393 (741)
T ss_dssp ETTTCCEE-EEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC--EEESCCSSSCEEEEEEEETTTTE-
T ss_pred ECCCCceE-EEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC--eeeeeecceEEEeEeEEeCCCCE-
Confidence 99887544 23333321 3467889999999999999888887753222 45677788888887 59999972
Q ss_pred cccceEEEEEecCCC--cEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728 410 SREKRWILYSGSLDK--SVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 410 ~~~~~~~l~s~s~Dg--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
++++++.|+ .++||++..... ....+.. ...+. .++|||||+.++.
T Consensus 394 ------l~~~~~~~~~~~~~l~~~~~~g~------~~~~l~~-~~~~~----~~~~spdg~~l~~ 441 (741)
T 2ecf_A 394 ------AYFRAGIESARESQIYAVPLQGG------QPQRLSK-APGMH----SASFARNASVYVD 441 (741)
T ss_dssp ------EEEEECSSCTTCBEEEEEETTCC------CCEECCC-SCSEE----EEEECTTSSEEEE
T ss_pred ------EEEEEeCCCCceEEEEEEEcCCC------Ceeeccc-CCCce----EEEECCCCCEEEE
Confidence 445666666 899999975321 1222322 22233 4488999998764
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=4.5e-23 Score=189.27 Aligned_cols=252 Identities=13% Similarity=0.109 Sum_probs=181.2
Q ss_pred EEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCC
Q 047728 163 SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDK 242 (474)
Q Consensus 163 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg 242 (474)
.++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~---------------------------------~~~~~~~~v~~~~~spdg~~l~~~~-~~ 62 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR---------------------------------VVWQTPELFEAPNWSPDGKYLLLNS-EG 62 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE---------------------------------EEEEESSCCEEEEECTTSSEEEEEE-TT
T ss_pred CCCcceeEEEEeCCCCcee---------------------------------eeccCCcceEeeEECCCCCEEEEEc-CC
Confidence 3467899999999876542 1234788999999999999999987 78
Q ss_pred cEEEEEcCC-cceeeeeeec-CcceeEEEecCCC-eEEEee--CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEE
Q 047728 243 TFKVWRTSD-YKCLESVIAH-DDAVNSIVAGFDG-LVFTGS--ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAI 317 (474)
Q Consensus 243 ~i~iwd~~~-~~~~~~~~~~-~~~v~~v~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 317 (474)
.|++||+.+ ++.......+ ...+.+++|+|++ .|++++ .++...||.++..... ...+ .....+..++|
T Consensus 63 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-----~~~~-~~~~~~~~~~~ 136 (297)
T 2ojh_A 63 LLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-----PRLM-TKNLPSYWHGW 136 (297)
T ss_dssp EEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-----CEEC-CSSSSEEEEEE
T ss_pred eEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-----eEEe-ecCCCccceEE
Confidence 999999998 8777666555 3678999999999 777777 4466777766543321 1122 22334889999
Q ss_pred cCCCCEEE-EEcCCCcEEEeecCcccccceeeeeccee--eEEEEecCCEEEEEe-CCCcEEEEECC-CCceEEEEeecC
Q 047728 318 SPDAAIVY-CGSSDGLVNFWERELNLSHGGVLRGHKLA--ILCLVTAGNLVFSGS-ADMSICIWRRK-ENEHICLSMLTG 392 (474)
Q Consensus 318 ~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~l~sgs-~dg~i~iwd~~-~~~~~~~~~~~~ 392 (474)
+|+++.|+ ++..++.+.+|+++........+..+... ..++++++++|+.++ .++.++||++. ... ....+..
T Consensus 137 spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~--~~~~~~~ 214 (297)
T 2ojh_A 137 SPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS--SVERITD 214 (297)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--CEEECCC
T ss_pred CCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC--CcEEEec
Confidence 99999877 67789999999864332222333344433 456677899887766 58999999886 333 2456777
Q ss_pred CccceEEEEEeeCCccccccceEEEEEecCC-----------CcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCC
Q 047728 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLD-----------KSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAP 461 (474)
Q Consensus 393 h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D-----------g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p 461 (474)
|...+..++|+|+++ +|+.++.+ +.|.+|++.+++. .....+.+|...+..+
T Consensus 215 ~~~~~~~~~~s~dg~--------~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-----~~~~~~~~~~~~~~~~---- 277 (297)
T 2ojh_A 215 SAYGDWFPHPSPSGD--------KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-----ETLFDLFGGQGTMNSP---- 277 (297)
T ss_dssp CSEEEEEEEECTTSS--------EEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-----EEEEEEEESTTTSCSC----
T ss_pred CCcccCCeEECCCCC--------EEEEEEcCCCCCcccccCceEEEEEecCCCCc-----eeeeccCCCCcccccc----
Confidence 888999999999998 77777765 5699999987632 2233344566666666
Q ss_pred CCCcCCceeecc
Q 047728 462 SFSSQGRICQKR 473 (474)
Q Consensus 462 ~~s~Dg~~l~~~ 473 (474)
+|+|||+.|+..
T Consensus 278 ~~spdg~~l~~~ 289 (297)
T 2ojh_A 278 NWSPDGDEFAYV 289 (297)
T ss_dssp CBCTTSSEEEEE
T ss_pred eECCCCCEEEEE
Confidence 889999988754
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=4.4e-23 Score=214.23 Aligned_cols=308 Identities=10% Similarity=0.041 Sum_probs=199.8
Q ss_pred EEEcCCEEEEeeCCCcEEEEeCC--ccccccccCcc---CEEEEEec--CCEEEEEeCC---------CeEEEEecCCCC
Q 047728 116 LAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSG---LVKAIVIS--NEKIFSGHQD---------GKIRVWKVSSKD 179 (474)
Q Consensus 116 ~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~---~V~~i~~~--~~~l~s~~~d---------g~i~vwd~~~~~ 179 (474)
++++|+++++ +.||+|++||.. +....+..|.. .|.+++|+ +++|++++.+ +.|.+||+.+++
T Consensus 24 ~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 102 (723)
T 1xfd_A 24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD 102 (723)
T ss_dssp BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred EcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCc
Confidence 3445787766 689999999843 44445555554 48899998 6789988764 788899999876
Q ss_pred cceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee
Q 047728 180 ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI 259 (474)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 259 (474)
... +.. ..+|...+..++|+|||+.|+.++. +.|++||+.+++......
T Consensus 103 ~~~---l~~---------------------------~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 103 PQS---LDP---------------------------PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp CEE---CCC---------------------------TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred eEe---ccC---------------------------CccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec
Confidence 421 110 0125556889999999999999886 789999999888766555
Q ss_pred ecCcce------------------eEEEecCCC-eEEEeeCCC----------------------------------cEE
Q 047728 260 AHDDAV------------------NSIVAGFDG-LVFTGSADG----------------------------------TVK 286 (474)
Q Consensus 260 ~~~~~v------------------~~v~~~~~~-~l~~~~~dg----------------------------------~i~ 286 (474)
.+...+ .+++|+||| .|++++.|+ .|+
T Consensus 152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~ 231 (723)
T 1xfd_A 152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLH 231 (723)
T ss_dssp CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEE
T ss_pred CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEE
Confidence 444333 789999999 777776543 788
Q ss_pred EEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC----CCcEEEeecCcccccceeeeecce------eeE
Q 047728 287 VWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS----DGLVNFWERELNLSHGGVLRGHKL------AIL 356 (474)
Q Consensus 287 iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~------~v~ 356 (474)
+||+.................+...+..++|+||+++|++... +..|++||+.++.........+.. ...
T Consensus 232 ~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 311 (723)
T 1xfd_A 232 VIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEP 311 (723)
T ss_dssp EEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCC
T ss_pred EEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCc
Confidence 8988754421111000111223667999999999998876643 357999999877544322222222 246
Q ss_pred EEEecCCEEEE--EeCCC------cEEEEE-CCCCceEEEEeecCCccceEE-EEEeeCCccccccceEEEEEe-cCC--
Q 047728 357 CLVTAGNLVFS--GSADM------SICIWR-RKENEHICLSMLTGHSGPVKC-LAVEKDDESLSREKRWILYSG-SLD-- 423 (474)
Q Consensus 357 ~~~~~~~~l~s--gs~dg------~i~iwd-~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~~~~~l~s~-s~D-- 423 (474)
.++++|+.|+. +..++ .|.+|| ..+++..+...+..+...+.. ++|+|+++ .|+.. ..+
T Consensus 312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~--------~l~~~~~~~~~ 383 (723)
T 1xfd_A 312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN--------KIYFLSTEDLP 383 (723)
T ss_dssp EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTT--------EEEEEESSSCT
T ss_pred eEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCC--------EEEEEEcCCCC
Confidence 78999997664 45667 577777 344331012234433344554 69999998 66544 444
Q ss_pred CcEEEEEccCCCCCCCCCcccccccC---CCCCCCccccCCCCCcCCceeec
Q 047728 424 KSVKMWRVSEQAPPLVSTTQQHPLEG---HGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 424 g~i~vw~~~~~~~~~~~~~~~~~~~~---~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
+.++||++...... ....+.. |...+..+ +|||||+.++.
T Consensus 384 ~~~~l~~~~~~~~~-----~~~~l~~~~~~~~~~~~~----~~spdg~~l~~ 426 (723)
T 1xfd_A 384 RRRQLYSANTVGNF-----NRQCLSCDLVENCTYFSA----SFSHSMDFFLL 426 (723)
T ss_dssp TCCEEEEECSSTTC-----CCBCSSTTSSSSCCCCEE----EECTTSSEEEE
T ss_pred cceEEEEEeCCCCC-----CcceecccccCCCCeEEE----EECCCCCEEEE
Confidence 88999999754211 1111221 34445555 78899987763
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=3.1e-22 Score=183.70 Aligned_cols=252 Identities=13% Similarity=0.089 Sum_probs=182.7
Q ss_pred EeeCCCcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCC-CCcceeeeecccCccceeeeeec
Q 047728 125 TGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSS-KDASIHKRVGTLPTFKDFIKCSM 200 (474)
Q Consensus 125 tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 200 (474)
.++.|+.|++||.. .....+..|...|.+++|+ +++|++++ ++.|++||+.+ ++.....
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~---------------- 79 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD---------------- 79 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC----------------
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec----------------
Confidence 45678999999965 3445566788999999998 56788776 78999999988 6543211
Q ss_pred CCCCeEEEeeeccceeeec-cCCeeEEEecCCCCEEEEEE--CCCcEEEE--EcCCcceeeeeeecCcceeEEEecCCC-
Q 047728 201 KPSNYIEVRRHRNGLWIKH-FDAISSLSMSEDQNLLYSAS--WDKTFKVW--RTSDYKCLESVIAHDDAVNSIVAGFDG- 274 (474)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s--~dg~i~iw--d~~~~~~~~~~~~~~~~v~~v~~~~~~- 274 (474)
..+ ...+.+++|+|++++|++++ .++.+.|| +..+++ ...+.. ...+..++|+|++
T Consensus 80 ----------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~ 141 (297)
T 2ojh_A 80 ----------------TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPDGK 141 (297)
T ss_dssp ----------------CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTTSS
T ss_pred ----------------cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCCCC
Confidence 112 46788999999999999998 33445555 545544 334433 3348889999999
Q ss_pred eEE-EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccccceeeeecc
Q 047728 275 LVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHGGVLRGHK 352 (474)
Q Consensus 275 ~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~ 352 (474)
.++ ++..++.+++|+++.... ....+..+...+.+++|+|+++.|++++ .++.+.+|+++........+..+.
T Consensus 142 ~l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 216 (297)
T 2ojh_A 142 SFTYCGIRDQVFDIYSMDIDSG-----VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA 216 (297)
T ss_dssp EEEEEEEETTEEEEEEEETTTC-----CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS
T ss_pred EEEEEECCCCceEEEEEECCCC-----cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC
Confidence 444 788899999999764332 1234456677899999999999887665 588999998763322223444444
Q ss_pred eee--EEEEecCCEEEEEeCC-----------CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEE
Q 047728 353 LAI--LCLVTAGNLVFSGSAD-----------MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS 419 (474)
Q Consensus 353 ~~v--~~~~~~~~~l~sgs~d-----------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s 419 (474)
..+ .++++++++|++++.+ +.|++||+.+++...+..+.+|...+.+++|+|+++ .|++
T Consensus 217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~--------~l~~ 288 (297)
T 2ojh_A 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGD--------EFAY 288 (297)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSS--------EEEE
T ss_pred cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCC--------EEEE
Confidence 444 5677889999888866 569999999887655666668888999999999998 6776
Q ss_pred ecCCC
Q 047728 420 GSLDK 424 (474)
Q Consensus 420 ~s~Dg 424 (474)
++.|.
T Consensus 289 ~~~~~ 293 (297)
T 2ojh_A 289 VRYFP 293 (297)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 66543
No 136
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=1.3e-21 Score=210.86 Aligned_cols=334 Identities=7% Similarity=0.009 Sum_probs=224.9
Q ss_pred eeeeeeecCcEEEEEEc--CCEEEEeeCC------CcEEEEeCC-ccccccccCccCE-------EEEEec--CCEEEEE
Q 047728 103 IGSLVREEGHIYSLAAA--GDLLYTGSDS------KNIRVWKNQ-REFSGFKSNSGLV-------KAIVIS--NEKIFSG 164 (474)
Q Consensus 103 ~~~l~~h~~~i~~~~~~--~~~l~tgs~d------g~v~vwd~~-~~~~~~~~h~~~V-------~~i~~~--~~~l~s~ 164 (474)
...|..|.+.+.+++++ |++||.++.+ ..|++|+.. .....+..|...+ ..++|+ ++.++++
T Consensus 45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~ 124 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST 124 (1045)
T ss_dssp EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEE
Confidence 45677899999988775 8899987643 378999854 3466778888888 899998 5566777
Q ss_pred eCC------CeEEEEecCCCCcceeeeecc-----cC------------------------------c------------
Q 047728 165 HQD------GKIRVWKVSSKDASIHKRVGT-----LP------------------------------T------------ 191 (474)
Q Consensus 165 ~~d------g~i~vwd~~~~~~~~~~~~~~-----~~------------------------------~------------ 191 (474)
+.+ ..|.+|++.++.......... .+ .
T Consensus 125 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~ 204 (1045)
T 1k32_A 125 DAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST 204 (1045)
T ss_dssp CTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS
T ss_pred CCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCC
Confidence 654 357778876654321100000 00 0
Q ss_pred --------cceeeeeecCCCCeEEEee-----eccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee
Q 047728 192 --------FKDFIKCSMKPSNYIEVRR-----HRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV 258 (474)
Q Consensus 192 --------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 258 (474)
...+.... .......++. .....+..|. .+...+|+|+++.|+.+. ++.|++||+...+ +..+
T Consensus 205 ~v~~~~~s~d~l~~~~-~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l 280 (1045)
T 1k32_A 205 HVSSPVIVGHRIYFIT-DIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKI 280 (1045)
T ss_dssp CCEEEEEETTEEEEEE-CTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEEC
T ss_pred cccceEEeCCEEEEEE-eccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeee
Confidence 00000000 0001111111 1112222333 466789999999888874 8899999985433 3344
Q ss_pred ee-----------cCcceeEEEec-CCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccc-cEEEEEEcCCCCEE
Q 047728 259 IA-----------HDDAVNSIVAG-FDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQEC-AVTALAISPDAAIV 324 (474)
Q Consensus 259 ~~-----------~~~~v~~v~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l 324 (474)
.. |...+.+++|+ |++ .+++++ ++.|.+|++.... ...+..+.. .+..++|+ +++.|
T Consensus 281 ~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 281 EIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-------VLKVPEPLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp CCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-------EEECSCCSCEEEEEECSS-SEEEE
T ss_pred ccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-------eEEccCCCcceEEeeeEc-CCCeE
Confidence 43 34578999999 999 666666 8899999986432 122345555 79999999 99999
Q ss_pred EEEcCCCcEE-EeecCcccccceeeeecce--eeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEE
Q 047728 325 YCGSSDGLVN-FWERELNLSHGGVLRGHKL--AILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLA 401 (474)
Q Consensus 325 ~~~~~dg~i~-v~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~ 401 (474)
+.++.++.+. +||+..+... .+. +|.. ...+++|+|++|++++.++.|++||+.+++. .....+|...+.+++
T Consensus 352 ~~~s~~~~l~~~~d~~~~~~~-~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~--~~~~~~~~~~v~~~~ 427 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP--TVIERSREAMITDFT 427 (1045)
T ss_dssp EEEETTEEEEEEEETTTCCEE-ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECSSSCCCCEE
T ss_pred EEEECCCceEEEEECCCCCce-Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce--EEeccCCCCCccceE
Confidence 9988888888 8998766432 222 4433 4467788999999999999999999998873 344557899999999
Q ss_pred EeeCCccccccceEEEEEecCCC----------cEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728 402 VEKDDESLSREKRWILYSGSLDK----------SVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ 471 (474)
Q Consensus 402 ~~~~~~~~~~~~~~~l~s~s~Dg----------~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~ 471 (474)
|+||++ +|++++.++ .|++||+.++. ...+..|...+.. ++|+|||+.|+
T Consensus 428 ~SpDG~--------~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--------~~~l~~~~~~~~~----~~~spdG~~l~ 487 (1045)
T 1k32_A 428 ISDNSR--------FIAYGFPLKHGETDGYVMQAIHVYDMEGRK--------IFAATTENSHDYA----PAFDADSKNLY 487 (1045)
T ss_dssp ECTTSC--------EEEEEEEECSSTTCSCCEEEEEEEETTTTE--------EEECSCSSSBEEE----EEECTTSCEEE
T ss_pred ECCCCC--------eEEEEecCccccccCCCCCeEEEEECCCCc--------EEEeeCCCcccCC----ceEcCCCCEEE
Confidence 999999 787776644 89999998762 2344455444444 58899999776
Q ss_pred cc
Q 047728 472 KR 473 (474)
Q Consensus 472 ~~ 473 (474)
..
T Consensus 488 ~~ 489 (1045)
T 1k32_A 488 YL 489 (1045)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=4.9e-21 Score=190.76 Aligned_cols=269 Identities=11% Similarity=0.029 Sum_probs=190.3
Q ss_pred cCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEE
Q 047728 157 SNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY 236 (474)
Q Consensus 157 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~ 236 (474)
.+..+++++.|++|.+||..+++....... ++. +..++|+|++++|+
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-------------------------------g~~--~~~v~~spdg~~l~ 194 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDT-------------------------------GYA--VHISRMSASGRYLL 194 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTCCEEEEEEC-------------------------------STT--EEEEEECTTSCEEE
T ss_pred CCEEEEEEcCCCeEEEEECCCceEEEEEec-------------------------------Ccc--cceEEECCCCCEEE
Confidence 366788899999999999998876432211 132 88999999999999
Q ss_pred EEECCCcEEEEEc--CCcceeeeeeecCcceeEEEecC----CC-eEEEee-CCCcEEEEEcccCCCceeeeeeee-e--
Q 047728 237 SASWDKTFKVWRT--SDYKCLESVIAHDDAVNSIVAGF----DG-LVFTGS-ADGTVKVWRRELQGKGTKHFFSQT-L-- 305 (474)
Q Consensus 237 s~s~dg~i~iwd~--~~~~~~~~~~~~~~~v~~v~~~~----~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-~-- 305 (474)
+++.|++|.+||+ .+++++..+.. ...+..++|+| ++ ++++++ .+++|.+||..+............ .
T Consensus 195 v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 195 VIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT 273 (543)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred EECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence 9999999999999 88888888874 55679999999 88 777776 489999999875442111100000 0
Q ss_pred --ecccccEEEEEEcCCCC-EEEEEcCCCcEEEeecCcccccc--eeeeecceeeEEEEecCCEEEEEe-CCCcEEEEEC
Q 047728 306 --LKQECAVTALAISPDAA-IVYCGSSDGLVNFWERELNLSHG--GVLRGHKLAILCLVTAGNLVFSGS-ADMSICIWRR 379 (474)
Q Consensus 306 --~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~ 379 (474)
......+..+.++|++. ++++...++.|.+||..+..... .+..+....-..|+++++++++++ .+++|.+||.
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~ 353 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDS 353 (543)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEEC
Confidence 01133789999999765 55667788999999998764433 111122233477889999877655 6899999999
Q ss_pred CCCceEEEEeecC----CccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEccCCCCCCCCCcccccccCCCCCC
Q 047728 380 KENEHICLSMLTG----HSGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAP 454 (474)
Q Consensus 380 ~~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v 454 (474)
.+++. +..+.. |.+....+ ++|++.. +++++. .|++|.||++.+...+....+..+.+.+|...+
T Consensus 354 ~tg~l--~~~i~~g~~ph~g~g~~~-~~p~~g~-------~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~ 423 (543)
T 1nir_A 354 KDRRL--SALVDVGKTPHPGRGANF-VHPKYGP-------VWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS 423 (543)
T ss_dssp TTTEE--EEEEECSSSBCCTTCEEE-EETTTEE-------EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC
T ss_pred CCCeE--EEeeccCCCCCCCCCccc-CCCCCcc-------EEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCc
Confidence 99873 444443 55444443 4676332 677775 689999999987433322236777888888777
Q ss_pred CccccCCCCCcCCceeecc
Q 047728 455 NSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 455 ~~l~~~p~~s~Dg~~l~~~ 473 (474)
..+ +|+|||+.|...
T Consensus 424 ~~v----~~~pdg~~l~v~ 438 (543)
T 1nir_A 424 LFI----KTHPKSSHLYVD 438 (543)
T ss_dssp CCE----ECCTTCCEEEEC
T ss_pred eEE----EcCCCCCcEEEe
Confidence 777 678888887654
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=5.9e-22 Score=205.18 Aligned_cols=290 Identities=12% Similarity=0.097 Sum_probs=197.2
Q ss_pred CCEEEEeeCCCcEEEEeCC--ccc-cccccCc-----------------cCEEEEEecCC-EEEEEeCCCeEEEEecCCC
Q 047728 120 GDLLYTGSDSKNIRVWKNQ--REF-SGFKSNS-----------------GLVKAIVISNE-KIFSGHQDGKIRVWKVSSK 178 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~--~~~-~~~~~h~-----------------~~V~~i~~~~~-~l~s~~~dg~i~vwd~~~~ 178 (474)
|+.+++++.|+ | +||.. +.+ ..+..|. ..|.+++|+++ .++.+ .++.|++||+.++
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~ 111 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF-TQGGLVGFDMLAR 111 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE-ETTEEEEEETTTT
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE-ECCEEEEEECCCC
Confidence 77777777788 8 99954 221 3333332 46999999844 44444 5699999999876
Q ss_pred CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC-----cc
Q 047728 179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD-----YK 253 (474)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-----~~ 253 (474)
+... +..+...+.+++|+|||+.|+.+ .|+.|++||+.+ ++
T Consensus 112 ~~~~---------------------------------l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 112 KVTY---------------------------------LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp EEEE---------------------------------EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred ceEE---------------------------------ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 4321 12255678889999999999985 679999999998 77
Q ss_pred eeeeeeecCcc--------------eeEEEecCCC-eEEEee---------------------------------CCCcE
Q 047728 254 CLESVIAHDDA--------------VNSIVAGFDG-LVFTGS---------------------------------ADGTV 285 (474)
Q Consensus 254 ~~~~~~~~~~~--------------v~~v~~~~~~-~l~~~~---------------------------------~dg~i 285 (474)
.......+... +.++.|+||+ .|++++ .+..|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 66544443332 4899999999 777776 44679
Q ss_pred EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-----cEEEeecCcccccceeeee-cce-----e
Q 047728 286 KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-----LVNFWERELNLSHGGVLRG-HKL-----A 354 (474)
Q Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~-~~~-----~ 354 (474)
++||+..+.. ........+...+.+++|+|+++.|++++.++ .|.+||+.++......... +.. .
T Consensus 238 ~~~d~~~~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~ 313 (706)
T 2z3z_A 238 GIYHLATGKT----VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLH 313 (706)
T ss_dssp EEEETTTTEE----EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCS
T ss_pred EEEECCCCce----EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccC
Confidence 9999875431 01111124667899999999999999887765 8999999887333333322 221 2
Q ss_pred eEEEEe--cCCEEEEEeCCCcEEEEECC-CCceEEEEeecCCccceEE-EEEeeCCccccccceEEEEEecCCC----cE
Q 047728 355 ILCLVT--AGNLVFSGSADMSICIWRRK-ENEHICLSMLTGHSGPVKC-LAVEKDDESLSREKRWILYSGSLDK----SV 426 (474)
Q Consensus 355 v~~~~~--~~~~l~sgs~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~~~~~l~s~s~Dg----~i 426 (474)
...+++ +|+++++++.|+.++||++. .+. .+..+..|...+.. ++|+|+++. ++++++.++ .|
T Consensus 314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~--~~~~l~~~~~~v~~~~~~spdg~~-------l~~~~~~~~~~~~~l 384 (706)
T 2z3z_A 314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR--LIRQVTKGEWEVTNFAGFDPKGTR-------LYFESTEASPLERHF 384 (706)
T ss_dssp CCEECTTCSSEEEEEECTTSSCEEEEEETTSC--EEEECCCSSSCEEEEEEECTTSSE-------EEEEESSSCTTCBEE
T ss_pred CceeecCCCCEEEEEEccCCccEEEEEECCCC--EEEecCCCCeEEEeeeEEcCCCCE-------EEEEecCCCCceEEE
Confidence 358889 99999999999999999876 343 35567778878877 799999982 445555555 45
Q ss_pred EEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728 427 KMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 427 ~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
..|++.++.. ..+. +...+.+ ++|||||+.++.
T Consensus 385 ~~~d~~~~~~--------~~l~-~~~~~~~----~~~spdg~~l~~ 417 (706)
T 2z3z_A 385 YCIDIKGGKT--------KDLT-PESGMHR----TQLSPDGSAIID 417 (706)
T ss_dssp EEEETTCCCC--------EESC-CSSSEEE----EEECTTSSEEEE
T ss_pred EEEEcCCCCc--------eecc-CCCceEE----EEECCCCCEEEE
Confidence 5555555421 1121 3333444 488999997764
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=1.4e-20 Score=176.69 Aligned_cols=262 Identities=15% Similarity=0.229 Sum_probs=170.3
Q ss_pred EEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC
Q 047728 161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW 240 (474)
Q Consensus 161 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~ 240 (474)
+++++.|+.|++|+++......... ...+...+.+++|+|++++|++++.
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~spdg~~l~~~~~ 57 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQ------------------------------VVDVPGQVQPMVVSPDKRYLYVGVR 57 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEE------------------------------EEECSSCCCCEEECTTSSEEEEEET
T ss_pred EEeCCCCCeEEEEEECCCCcEEEee------------------------------eEecCCCCceEEECCCCCEEEEeec
Confidence 4444789999999996422111110 1226678899999999999999888
Q ss_pred C-CcEEEEEcC--Ccc--eeeeeeecCcceeEEEecCCC-eEEEee-CCCcEEEEEcccCCCceeeeeeeeeecccccEE
Q 047728 241 D-KTFKVWRTS--DYK--CLESVIAHDDAVNSIVAGFDG-LVFTGS-ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVT 313 (474)
Q Consensus 241 d-g~i~iwd~~--~~~--~~~~~~~~~~~v~~v~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 313 (474)
+ +.|.+|++. +++ .+..+..+. .+..++|+|++ .+++++ .++.|.+||+. ... ....... ......+.
T Consensus 58 ~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~--~~~~~~~-~~~~~~~~ 132 (343)
T 1ri6_A 58 PEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGL--PVGVVDV-VEGLDGCH 132 (343)
T ss_dssp TTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTE--EEEEEEE-ECCCTTBC
T ss_pred CCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC-CCc--ccccccc-ccCCCCce
Confidence 7 999999997 444 334444434 78999999999 565554 58899999995 111 1112222 23344688
Q ss_pred EEEEcCCCCEEEEEc-CCCcEEEeecCc-ccccce---eee---ecceeeEEEEecCCEEEEEe-CCCcEEEEECCC--C
Q 047728 314 ALAISPDAAIVYCGS-SDGLVNFWEREL-NLSHGG---VLR---GHKLAILCLVTAGNLVFSGS-ADMSICIWRRKE--N 382 (474)
Q Consensus 314 ~l~~~~~~~~l~~~~-~dg~i~v~d~~~-~~~~~~---~~~---~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~~--~ 382 (474)
+++|+|+++++++++ .++.|.+||+.. +..... ... +.....++++++++++++++ .++.|.+||+.. +
T Consensus 133 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g 212 (343)
T 1ri6_A 133 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG 212 (343)
T ss_dssp CCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS
T ss_pred EEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 999999999888777 899999999986 322110 111 11233467888999776555 889999999953 4
Q ss_pred ceEEEEeec---C-C--ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCc
Q 047728 383 EHICLSMLT---G-H--SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNS 456 (474)
Q Consensus 383 ~~~~~~~~~---~-h--~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~ 456 (474)
+........ . + ...+..++|+|+++. +++++..|+.|++|++....... .....+..+.. +..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~-------l~v~~~~~~~i~v~d~~~~~~~~---~~~~~~~~~~~-~~~ 281 (343)
T 1ri6_A 213 NIECVQTLDMMPENFSDTRWAADIHITPDGRH-------LYACDRTASLITVFSVSEDGSVL---SKEGFQPTETQ-PRG 281 (343)
T ss_dssp CCEEEEEEECSCTTCCSCCCEEEEEECTTSSE-------EEEEETTTTEEEEEEECTTSCCE---EEEEEEECSSS-CCC
T ss_pred cEEEEeeccccCccccccCCccceEECCCCCE-------EEEEecCCCEEEEEEEcCCCCce---EEeeeecCCCc-cce
Confidence 322222222 1 1 235778999999972 34466689999999997421111 22223333333 666
Q ss_pred cccCCCCCcCCceeec
Q 047728 457 LPYAPSFSSQGRICQK 472 (474)
Q Consensus 457 l~~~p~~s~Dg~~l~~ 472 (474)
+ +|+|||+.|..
T Consensus 282 ~----~~s~dg~~l~~ 293 (343)
T 1ri6_A 282 F----NVDHSGKYLIA 293 (343)
T ss_dssp E----EECTTSSEEEE
T ss_pred E----EECCCCCEEEE
Confidence 6 67888886543
No 140
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=5.9e-21 Score=205.78 Aligned_cols=304 Identities=11% Similarity=0.063 Sum_probs=204.1
Q ss_pred cCcEEEEEEcCCEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCC------CeEEEEecCCCCc
Q 047728 110 EGHIYSLAAAGDLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQD------GKIRVWKVSSKDA 180 (474)
Q Consensus 110 ~~~i~~~~~~~~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d------g~i~vwd~~~~~~ 180 (474)
.+.+.+.+++++.|+.++. +.|++|+.. .....+..|...+.+++|+ +++|++++.+ ..|++|++.+++.
T Consensus 14 ~~~~~~~~~S~~~iaf~~~-~~l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~ 92 (1045)
T 1k32_A 14 PNLLLNPDIHGDRIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI 92 (1045)
T ss_dssp CCCCEEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred cceEeCcEEeCCEEEEEEC-CcEEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe
Confidence 4567788888899988876 689999964 4566778899999999998 6788877643 3799999987653
Q ss_pred ceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe-------eEEEecCCCCEEEEEECC------CcEEEE
Q 047728 181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI-------SSLSMSEDQNLLYSASWD------KTFKVW 247 (474)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-------~~l~~~~~~~~l~s~s~d------g~i~iw 247 (474)
.. + ..|...+ ..++|+||++++++++.+ ..|.+|
T Consensus 93 ~~---l------------------------------t~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~ 139 (1045)
T 1k32_A 93 KR---I------------------------------TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRV 139 (1045)
T ss_dssp EE---C------------------------------CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEE
T ss_pred EE---c------------------------------ccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEE
Confidence 21 1 1133333 455555555544444322 234444
Q ss_pred EcCCcc-------------------------------------------------eeeeeeecCcceeEEEecCCCeEEE
Q 047728 248 RTSDYK-------------------------------------------------CLESVIAHDDAVNSIVAGFDGLVFT 278 (474)
Q Consensus 248 d~~~~~-------------------------------------------------~~~~~~~~~~~v~~v~~~~~~~l~~ 278 (474)
|+.+++ ....+..|...+.++.|+++..+++
T Consensus 140 ~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~ 219 (1045)
T 1k32_A 140 ENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFI 219 (1045)
T ss_dssp EGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEE
T ss_pred ECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEE
Confidence 443322 2233456778888899988866677
Q ss_pred eeCCCcEEEEEcccCCCceeee----------e------------------------eeeeec-----------ccccEE
Q 047728 279 GSADGTVKVWRRELQGKGTKHF----------F------------------------SQTLLK-----------QECAVT 313 (474)
Q Consensus 279 ~~~dg~i~iwd~~~~~~~~~~~----------~------------------------~~~~~~-----------~~~~v~ 313 (474)
++.++.++||.+.......... . ...+.. +...+.
T Consensus 220 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~ 299 (1045)
T 1k32_A 220 TDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKF 299 (1045)
T ss_dssp ECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGG
T ss_pred EeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccc
Confidence 8888999999865422110000 0 000000 122577
Q ss_pred EEEEc-CCCCEEEEEcCCCcEEEeecCcccccceeeeecce-ee--EEEEecCCEEEEEeCCCcEE-EEECCCCceEEEE
Q 047728 314 ALAIS-PDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL-AI--LCLVTAGNLVFSGSADMSIC-IWRRKENEHICLS 388 (474)
Q Consensus 314 ~l~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-~v--~~~~~~~~~l~sgs~dg~i~-iwd~~~~~~~~~~ 388 (474)
+++|+ |+++.|++++ ++.|.+|+...+... .+..|.. .+ .+++ +++.|+.++.++.+. +||+.+++. .
T Consensus 300 ~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~---~ 372 (1045)
T 1k32_A 300 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL--KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA---E 372 (1045)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEE--ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE---E
T ss_pred eeeecCCCCCEEEEEE-cCEEEEEcCCCCceE--EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc---e
Confidence 88888 8888887776 778888888765432 1223333 33 4556 788899988888888 999988763 3
Q ss_pred eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCc
Q 047728 389 MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGR 468 (474)
Q Consensus 389 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~ 468 (474)
.+.+|...+..++|+||++ +|++++.++.|++||+.+++ ....+.+|...+.++ +|||||+
T Consensus 373 ~l~~~~~~~~~~~~SpDG~--------~la~~~~~~~v~~~d~~tg~-------~~~~~~~~~~~v~~~----~~SpDG~ 433 (1045)
T 1k32_A 373 KFEENLGNVFAMGVDRNGK--------FAVVANDRFEIMTVDLETGK-------PTVIERSREAMITDF----TISDNSR 433 (1045)
T ss_dssp ECCCCCCSEEEEEECTTSS--------EEEEEETTSEEEEEETTTCC-------EEEEEECSSSCCCCE----EECTTSC
T ss_pred EecCCccceeeeEECCCCC--------EEEEECCCCeEEEEECCCCc-------eEEeccCCCCCccce----EECCCCC
Confidence 4447888999999999999 89999999999999998773 223344677777766 7899999
Q ss_pred eeecc
Q 047728 469 ICQKR 473 (474)
Q Consensus 469 ~l~~~ 473 (474)
.|+..
T Consensus 434 ~la~~ 438 (1045)
T 1k32_A 434 FIAYG 438 (1045)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 88654
No 141
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=8.8e-21 Score=177.64 Aligned_cols=265 Identities=9% Similarity=0.032 Sum_probs=184.6
Q ss_pred CEEEEeeCCCcEEEEeCC--ccccccccCc-c-CEEEEEec--CCEE-EEEeCCCeEEEEecCCCCcceeeeecccCccc
Q 047728 121 DLLYTGSDSKNIRVWKNQ--REFSGFKSNS-G-LVKAIVIS--NEKI-FSGHQDGKIRVWKVSSKDASIHKRVGTLPTFK 193 (474)
Q Consensus 121 ~~l~tgs~dg~v~vwd~~--~~~~~~~~h~-~-~V~~i~~~--~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 193 (474)
++|++++.++.|++||.. +.+..+.... . .+..++|+ ++++ +++..++.|.+||+.+++..........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~---- 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT----
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc----
Confidence 578999999999999964 3333343222 1 47788887 4455 5566788999999988765432221100
Q ss_pred eeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE------------CCCcEEEEEcCCcceeeeeeec
Q 047728 194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS------------WDKTFKVWRTSDYKCLESVIAH 261 (474)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~ 261 (474)
..|...+.+++|+|++++|+++. .++.|.+||+.+++.+..+..
T Consensus 78 -----------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~- 133 (337)
T 1pby_B 78 -----------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA- 133 (337)
T ss_dssp -----------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred -----------------------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-
Confidence 00233567899999999999886 579999999999888877765
Q ss_pred CcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC---------
Q 047728 262 DDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG--------- 331 (474)
Q Consensus 262 ~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--------- 331 (474)
...+.+++|+|++ .++++ ++.|.+||+..... ......+. ....+.|+|++..+++.+..+
T Consensus 134 ~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 134 PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTL------VEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEE------EEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcE------eeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeec
Confidence 5567889999999 56666 68999999875432 11111111 001237889888766554333
Q ss_pred ---------------cEEEeecCcccccceeeeeccee--eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCc
Q 047728 332 ---------------LVNFWERELNLSHGGVLRGHKLA--ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHS 394 (474)
Q Consensus 332 ---------------~i~v~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~ 394 (474)
.|.+||+.++.........+... .+++++++++++++ ++.|.+||+.+++.. ..+.. .
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~--~~~~~-~ 279 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASI--KRVPL-P 279 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEE--EEEEC-S
T ss_pred cccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCc--ceecC-C
Confidence 46889998776542223333323 37778899999988 799999999988743 33432 3
Q ss_pred cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 395 GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
..+.+++|+|+++ +|++++.|+.|++||+.+++
T Consensus 280 ~~~~~~~~s~dg~--------~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 280 HSYYSVNVSTDGS--------TVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp SCCCEEEECTTSC--------EEEEESBSSEEEEEETTTCC
T ss_pred CceeeEEECCCCC--------EEEEEcCCCcEEEEECcCCc
Confidence 4678999999998 78888889999999998873
No 142
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=4.6e-20 Score=174.07 Aligned_cols=262 Identities=10% Similarity=0.094 Sum_probs=183.1
Q ss_pred ccCEEEEEec--CCEEEEEeC-------CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728 148 SGLVKAIVIS--NEKIFSGHQ-------DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218 (474)
Q Consensus 148 ~~~V~~i~~~--~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
...+..++++ ++++++++. ++.|.+||..+++......
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------------------- 86 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------------------- 86 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE---------------------------------
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe---------------------------------
Confidence 3456677776 456776663 5689999998876543222
Q ss_pred ccCCeeEEEecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcc---------eeEEEecCCC-eEEEee--CCCcE
Q 047728 219 HFDAISSLSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDA---------VNSIVAGFDG-LVFTGS--ADGTV 285 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~---------v~~v~~~~~~-~l~~~~--~dg~i 285 (474)
....+..++|+|++++++++ ..++.|.+||..+++.+..+..+... +.+++++|++ .+++++ .++.|
T Consensus 87 ~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i 166 (353)
T 3vgz_A 87 NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVI 166 (353)
T ss_dssp ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEE
T ss_pred cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceE
Confidence 22346788999999966555 45799999999999988887765432 6889999998 555554 58889
Q ss_pred EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee---ecc--eeeEEEEe
Q 047728 286 KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR---GHK--LAILCLVT 360 (474)
Q Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~--~~v~~~~~ 360 (474)
.+||+..... ......+...+..++|+|+++++++++.++.|.+||+.++........ ++. ...+++++
T Consensus 167 ~~~d~~~~~~------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 240 (353)
T 3vgz_A 167 WVVDGGNIKL------KTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT 240 (353)
T ss_dssp EEEETTTTEE------EEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred EEEcCCCCce------EEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence 9999875432 223333455578899999999999999999999999988765543332 122 23367888
Q ss_pred cCCEEEEEeC-CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCC
Q 047728 361 AGNLVFSGSA-DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLV 439 (474)
Q Consensus 361 ~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~ 439 (474)
+++++++++. ++.|.+||..+++.. ..+.... ...++|+|+++. ++++...++.|.+||+.+++
T Consensus 241 dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~~~~--~~~~~~s~dg~~-------l~v~~~~~~~v~~~d~~~~~---- 305 (353)
T 3vgz_A 241 ARQRAFITDSKAAEVLVVDTRNGNIL--AKVAAPE--SLAVLFNPARNE-------AYVTHRQAGKVSVIDAKSYK---- 305 (353)
T ss_dssp TTTEEEEEESSSSEEEEEETTTCCEE--EEEECSS--CCCEEEETTTTE-------EEEEETTTTEEEEEETTTTE----
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEE--EEEEcCC--CceEEECCCCCE-------EEEEECCCCeEEEEECCCCe----
Confidence 9997777665 499999999988743 3333322 257999999883 45555579999999998763
Q ss_pred CCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728 440 STTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ 471 (474)
Q Consensus 440 ~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~ 471 (474)
....+... ..+.++ +|+|||+.+.
T Consensus 306 ---~~~~~~~~-~~~~~~----~~s~dg~~l~ 329 (353)
T 3vgz_A 306 ---VVKTFDTP-THPNSL----ALSADGKTLY 329 (353)
T ss_dssp ---EEEEEECC-SEEEEE----EECTTSCEEE
T ss_pred ---EEEEEecC-CCCCeE----EEcCCCCEEE
Confidence 22222222 234444 7899998543
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=6.3e-21 Score=198.55 Aligned_cols=287 Identities=10% Similarity=0.039 Sum_probs=188.6
Q ss_pred ccCEEEEEec--CCEEEEEeC-CC-----eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728 148 SGLVKAIVIS--NEKIFSGHQ-DG-----KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH 219 (474)
Q Consensus 148 ~~~V~~i~~~--~~~l~s~~~-dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 219 (474)
...|..++|+ +++|++++. |+ .|++||+.+++................+.. .... .+ +...+ ..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~--~~~~----~~-~~~~~-~~ 107 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSD--EEKA----RR-ERQRI-AA 107 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC----------------------------C
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccc--hhhh----hh-hhhhh-cc
Confidence 5568999998 678999998 88 899999998865433221111000000000 0000 00 00000 01
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc--eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK--CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
...|.+++|+||+++|++++. +.|++||+.++. ....+..|...+..++|+||| .|+.++ ++.|++||+..+..
T Consensus 108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~- 184 (741)
T 2ecf_A 108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ- 184 (741)
T ss_dssp CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-
T ss_pred ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-
Confidence 134789999999999999886 999999999873 455666788889999999999 566665 67999999875321
Q ss_pred eeeeeeeeeecccc----------------cEEEEEEcCCCCEEEEEcCCC-----------------------------
Q 047728 297 TKHFFSQTLLKQEC----------------AVTALAISPDAAIVYCGSSDG----------------------------- 331 (474)
Q Consensus 297 ~~~~~~~~~~~~~~----------------~v~~l~~~~~~~~l~~~~~dg----------------------------- 331 (474)
......+.. .+..++|+|||++|++++.|+
T Consensus 185 -----~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 259 (741)
T 2ecf_A 185 -----MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA 259 (741)
T ss_dssp -----EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred -----EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence 111111221 247899999999999987765
Q ss_pred ----cEEEeecCc-ccccceeee-ecce--eeEEEEecCCEEEEEeC-----CCcEEEEECCCCceEEEEeecCCcc---
Q 047728 332 ----LVNFWEREL-NLSHGGVLR-GHKL--AILCLVTAGNLVFSGSA-----DMSICIWRRKENEHICLSMLTGHSG--- 395 (474)
Q Consensus 332 ----~i~v~d~~~-~~~~~~~~~-~~~~--~v~~~~~~~~~l~sgs~-----dg~i~iwd~~~~~~~~~~~~~~h~~--- 395 (474)
.|.+||+.+ +........ .|.. ...++ ++|++|+.++. +..|++||+.+++.. ..+..+..
T Consensus 260 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~ 336 (741)
T 2ecf_A 260 NVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR--VLAHETSPTWV 336 (741)
T ss_dssp CCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE--EEEEEECSSCC
T ss_pred CCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE--EEEEcCCCCcC
Confidence 788899887 653321111 2333 34778 99999987764 578999999988743 33333332
Q ss_pred -ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728 396 -PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ 471 (474)
Q Consensus 396 -~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~ 471 (474)
.+..++|+||++ ++++++.||.++||.+.... . ...+..+...+.++ ..|||||+.++
T Consensus 337 ~~~~~~~~spdg~--------~~~~~~~~g~~~l~~~~~~~------~-~~~l~~~~~~v~~~---~~~s~dg~~l~ 395 (741)
T 2ecf_A 337 PLHNSLRFLDDGS--------ILWSSERTGFQHLYRIDSKG------K-AAALTHGNWSVDEL---LAVDEKAGLAY 395 (741)
T ss_dssp CCCSCCEECTTSC--------EEEEECTTSSCEEEEECSSS------C-EEESCCSSSCEEEE---EEEETTTTEEE
T ss_pred CcCCceEECCCCe--------EEEEecCCCccEEEEEcCCC------C-eeeeeecceEEEeE---eEEeCCCCEEE
Confidence 456899999998 89999999999999886321 1 33455555555443 14788997654
No 144
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=2.3e-19 Score=169.04 Aligned_cols=266 Identities=12% Similarity=0.178 Sum_probs=175.0
Q ss_pred CCCcEEEEeCCc---ccc--ccccCccCEEEEEec-CCEEEEEeC---CCeEEEEecCCCCcceeeeecccCccceeeee
Q 047728 128 DSKNIRVWKNQR---EFS--GFKSNSGLVKAIVIS-NEKIFSGHQ---DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKC 198 (474)
Q Consensus 128 ~dg~v~vwd~~~---~~~--~~~~h~~~V~~i~~~-~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 198 (474)
.++.|.+|+... .+. ....+...+..++|+ +..|++++. ++.|++|+++.+......
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~-------------- 79 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLN-------------- 79 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEE--------------
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEee--------------
Confidence 355688886331 111 223455667788888 233666654 689999999766432111
Q ss_pred ecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCC-c--ceeeeeeec---------Ccce
Q 047728 199 SMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSD-Y--KCLESVIAH---------DDAV 265 (474)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~-~--~~~~~~~~~---------~~~v 265 (474)
.+..+...+..++|+|++++|++++ .++.|.+||+.. + +.+..+... ...+
T Consensus 80 ----------------~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~ 143 (347)
T 3hfq_A 80 ----------------TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHI 143 (347)
T ss_dssp ----------------EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCE
T ss_pred ----------------eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCc
Confidence 1123667788999999999999888 779999999963 2 223333221 1247
Q ss_pred eEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE-EcCCCcEEEeecCc--c
Q 047728 266 NSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC-GSSDGLVNFWEREL--N 341 (474)
Q Consensus 266 ~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~v~d~~~--~ 341 (474)
.+++|+|++ .+++...++.|++|++....... ............+..++|+|+++++++ ...++.|.+|+++. +
T Consensus 144 ~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~--~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g 221 (347)
T 3hfq_A 144 HYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLS--EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG 221 (347)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEEEECTTSCEE--EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred eEEEECCCCcEEEEeCCCCEEEEEEECCCCcEE--EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 889999999 66666678899999998322211 111112223346788999999996665 56788999999874 2
Q ss_pred cc-cceeeee--------cceeeEEEEecCCEEE-EEeCCCcEEEEECCC-CceEEEEeecCCccceEEEEEeeCCcccc
Q 047728 342 LS-HGGVLRG--------HKLAILCLVTAGNLVF-SGSADMSICIWRRKE-NEHICLSMLTGHSGPVKCLAVEKDDESLS 410 (474)
Q Consensus 342 ~~-~~~~~~~--------~~~~v~~~~~~~~~l~-sgs~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 410 (474)
.. ....... ....-++++++|++|+ +...++.|.+|++.. +....+..+..+...+..++|+|+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~--- 298 (347)
T 3hfq_A 222 AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEA--- 298 (347)
T ss_dssp EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSS---
T ss_pred ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCC---
Confidence 21 1111111 1133477889999774 556689999999963 33344566666677789999999998
Q ss_pred ccceEEEEEecC-CCcEEEEEccC
Q 047728 411 REKRWILYSGSL-DKSVKMWRVSE 433 (474)
Q Consensus 411 ~~~~~~l~s~s~-Dg~i~vw~~~~ 433 (474)
+|++++. ++.|.+|++..
T Consensus 299 -----~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 299 -----FVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp -----EEEEEETTTTEEEEEEECT
T ss_pred -----EEEEEEcCCCcEEEEEEeC
Confidence 6666654 58999997653
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=5.8e-20 Score=171.91 Aligned_cols=228 Identities=13% Similarity=0.077 Sum_probs=162.2
Q ss_pred CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE
Q 047728 159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA 238 (474)
Q Consensus 159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~ 238 (474)
..+++++.++.|++||+.+++...... .+...+ +++|+|++++++++
T Consensus 11 ~~~v~~~~~~~v~~~d~~~~~~~~~~~--------------------------------~~~~~~-~~~~s~dg~~l~~~ 57 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTDTLEILNQIT--------------------------------LGYDFV-DTAITSDCSNVVVT 57 (331)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEE--------------------------------CCCCEE-EEEECSSSCEEEEE
T ss_pred EEEEEecCCCeEEEEeCcccceeeeEE--------------------------------ccCCcc-eEEEcCCCCEEEEE
Confidence 357788899999999999886543222 134445 99999999977777
Q ss_pred EC-CCcEEEEEcCCcce-eeeeeecCcceeEEEecCCC-eEEEeeCCC---cEEEEEcccCCCceeeeeeeeeecccccE
Q 047728 239 SW-DKTFKVWRTSDYKC-LESVIAHDDAVNSIVAGFDG-LVFTGSADG---TVKVWRRELQGKGTKHFFSQTLLKQECAV 312 (474)
Q Consensus 239 s~-dg~i~iwd~~~~~~-~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 312 (474)
+. ++.|.+||+.+++. ...+..+..+..+++|+|++ +++++..++ .|.+||+..... ... ......+
T Consensus 58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~------~~~-~~~~~~~ 130 (331)
T 3u4y_A 58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF------IST-IPIPYDA 130 (331)
T ss_dssp ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE------EEE-EECCTTE
T ss_pred eCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe------EEE-EECCCCc
Confidence 65 89999999999988 77777777766669999999 666555443 899999875432 122 2234457
Q ss_pred EEEEEcCCCCEEEEE-cCCCc-EEEeecCcccccc----e-eeeecceeeEEEEecCCEEEEE-eCCCcEEEEECCCCce
Q 047728 313 TALAISPDAAIVYCG-SSDGL-VNFWERELNLSHG----G-VLRGHKLAILCLVTAGNLVFSG-SADMSICIWRRKENEH 384 (474)
Q Consensus 313 ~~l~~~~~~~~l~~~-~~dg~-i~v~d~~~~~~~~----~-~~~~~~~~v~~~~~~~~~l~sg-s~dg~i~iwd~~~~~~ 384 (474)
..++|+|++++++++ ..++. |.+|++....... . ...+.....+++++++++++++ ..++.|.+||+.+++.
T Consensus 131 ~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 131 VGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp EEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred cceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 899999999855554 55588 9999987543221 1 1112334457788899866554 4689999999988774
Q ss_pred -EEEEeecCCccceEEEEEeeCCccccccceEEEE-EecCCCcEEEEEccCCC
Q 047728 385 -ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILY-SGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 385 -~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~-s~s~Dg~i~vw~~~~~~ 435 (474)
..+..+.. ...+..++|+|+++ +|+ +...++.|.+||+.+++
T Consensus 211 ~~~~~~~~~-~~~~~~~~~spdg~--------~l~v~~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 211 ITLLNAVGT-NNLPGTIVVSRDGS--------TVYVLTESTVDVFNFNQLSGT 254 (331)
T ss_dssp CEEEEEEEC-SSCCCCEEECTTSS--------EEEEECSSEEEEEEEETTTTE
T ss_pred cceeeeccC-CCCCceEEECCCCC--------EEEEEEcCCCEEEEEECCCCc
Confidence 11334443 36678999999998 554 44568889999998764
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=5.4e-19 Score=166.70 Aligned_cols=276 Identities=9% Similarity=0.036 Sum_probs=189.7
Q ss_pred cCcEEEEEEc--CCEEEEeeC-------CCcEEEEeCC--ccccccccCccCEEEEEec--CCEEE-EEeCCCeEEEEec
Q 047728 110 EGHIYSLAAA--GDLLYTGSD-------SKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIF-SGHQDGKIRVWKV 175 (474)
Q Consensus 110 ~~~i~~~~~~--~~~l~tgs~-------dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~-s~~~dg~i~vwd~ 175 (474)
...+..++++ +++|++++. ++.|.+||.. +....+.. ...+..++++ +++++ +...++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3456665554 778887774 5689999954 33333332 3345667776 56454 5556799999999
Q ss_pred CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE--CCCcEEEEEcCCcc
Q 047728 176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS--WDKTFKVWRTSDYK 253 (474)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~ 253 (474)
.+++............. -......+.+++|+|+++++++++ .++.|.+||..+++
T Consensus 119 ~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~ 175 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRT-----------------------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK 175 (353)
T ss_dssp TTCCEEEEEESCCCCCC-----------------------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE
T ss_pred CCCeeEEEEecCCCccc-----------------------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc
Confidence 98875433322110000 000111267899999999888776 47889999999999
Q ss_pred eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CC
Q 047728 254 CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DG 331 (474)
Q Consensus 254 ~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg 331 (474)
.+..+..+...+.+++|+|++ .+++++.++.|.+||+....... ........+...+..++|+|+++++++++. ++
T Consensus 176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 253 (353)
T 3vgz_A 176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILS--RKKLLDDGKEHFFINISLDTARQRAFITDSKAA 253 (353)
T ss_dssp EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEE--EEECCCSSSCCCEEEEEEETTTTEEEEEESSSS
T ss_pred eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEE--EEEcCCCCCCcccceEEECCCCCEEEEEeCCCC
Confidence 988887566678999999998 78888899999999987543211 111111124556889999999997777665 48
Q ss_pred cEEEeecCcccccceeeeecceeeEEEEecCCEEEEEe-CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcccc
Q 047728 332 LVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS-ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLS 410 (474)
Q Consensus 332 ~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 410 (474)
.|.+||..++........+ ....+++++++++++++. .++.|.+||..+++. +..+.. ...+.+++|+|+++
T Consensus 254 ~v~~~d~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--~~~~~~-~~~~~~~~~s~dg~--- 326 (353)
T 3vgz_A 254 EVLVVDTRNGNILAKVAAP-ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV--VKTFDT-PTHPNSLALSADGK--- 326 (353)
T ss_dssp EEEEEETTTCCEEEEEECS-SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEEEC-CSEEEEEEECTTSC---
T ss_pred EEEEEECCCCcEEEEEEcC-CCceEEECCCCCEEEEEECCCCeEEEEECCCCeE--EEEEec-CCCCCeEEEcCCCC---
Confidence 9999999887655444333 335588899999666555 689999999998874 334443 34679999999998
Q ss_pred ccceEEEEEecCC
Q 047728 411 REKRWILYSGSLD 423 (474)
Q Consensus 411 ~~~~~~l~s~s~D 423 (474)
+|+.+..+
T Consensus 327 -----~l~v~~~~ 334 (353)
T 3vgz_A 327 -----TLYVSVKQ 334 (353)
T ss_dssp -----EEEEEEEC
T ss_pred -----EEEEEEcc
Confidence 55555544
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=4.1e-20 Score=173.07 Aligned_cols=251 Identities=10% Similarity=0.009 Sum_probs=175.3
Q ss_pred CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccC-CeeEEEecCCCCEEE-
Q 047728 159 EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFD-AISSLSMSEDQNLLY- 236 (474)
Q Consensus 159 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~- 236 (474)
++|++++.++.|++||+.+++....... ++.. .+..++|+|+++.++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~s~dg~~l~v 50 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITI-------------------------------ADAGPTPMVPMVAPGGRIAYA 50 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC-------------------------------TTCTTCCCCEEECTTSSEEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEc-------------------------------CCCCCCccceEEcCCCCEEEE
Confidence 4789999999999999988754322211 0211 477899999998765
Q ss_pred EEECCCcEEEEEcCCcceeeeeeec-----CcceeEEEecCCC-eEEEee------------CCCcEEEEEcccCCCcee
Q 047728 237 SASWDKTFKVWRTSDYKCLESVIAH-----DDAVNSIVAGFDG-LVFTGS------------ADGTVKVWRRELQGKGTK 298 (474)
Q Consensus 237 s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~v~~~~~~-~l~~~~------------~dg~i~iwd~~~~~~~~~ 298 (474)
++..++.|.+||+.+++.+..+... ...+..++|+|++ .++++. .++.|.+||+.....
T Consensus 51 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--- 127 (337)
T 1pby_B 51 TVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR--- 127 (337)
T ss_dssp EETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE---
T ss_pred EeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE---
Confidence 4556789999999999888776532 2367889999999 777765 579999999874321
Q ss_pred eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCC------
Q 047728 299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADM------ 372 (474)
Q Consensus 299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg------ 372 (474)
.... .....+..++|+|++++|+++ ++.|.+||+.++................+++++..++..+.++
T Consensus 128 ---~~~~-~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 201 (337)
T 1pby_B 128 ---RKAF-EAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATP 201 (337)
T ss_dssp ---EEEE-ECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred ---EEEE-eCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeee
Confidence 1122 224457889999999988887 6889999998776543332222112236778877665544332
Q ss_pred ------------------cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 373 ------------------SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 373 ------------------~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
.|.+||+.+++.. ...+..+...+.+++|+|+++ +|+++ ++.|.+||+.++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~--------~l~~~--~~~v~~~d~~~~ 270 (337)
T 1pby_B 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKT--------RAFGA--YNVLESFDLEKN 270 (337)
T ss_dssp EEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSS--------EEEEE--ESEEEEEETTTT
T ss_pred eeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCC--------EEEEe--CCeEEEEECCCC
Confidence 4689999988754 445556777889999999998 77777 799999999876
Q ss_pred CCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728 435 APPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
+. ...+.. ...+.++ +|+|||+.+..
T Consensus 271 ~~-------~~~~~~-~~~~~~~----~~s~dg~~l~~ 296 (337)
T 1pby_B 271 AS-------IKRVPL-PHSYYSV----NVSTDGSTVWL 296 (337)
T ss_dssp EE-------EEEEEC-SSCCCEE----EECTTSCEEEE
T ss_pred cC-------cceecC-CCceeeE----EECCCCCEEEE
Confidence 32 222222 2334555 77888986654
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=4.3e-19 Score=167.26 Aligned_cols=236 Identities=14% Similarity=0.183 Sum_probs=158.3
Q ss_pred ccCCeeEEEecCCCCEEEEEEC---CCcEEEEEcCCcc--eeeeeeecCcceeEEEecCCC-eEEEee-CCCcEEEEEcc
Q 047728 219 HFDAISSLSMSEDQNLLYSASW---DKTFKVWRTSDYK--CLESVIAHDDAVNSIVAGFDG-LVFTGS-ADGTVKVWRRE 291 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~--~~~~~~~~~~~v~~v~~~~~~-~l~~~~-~dg~i~iwd~~ 291 (474)
+...+..++|+|+++ |++++. ++.|.+||+.+++ .+..+..+...+..++|+|++ .|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 556778899999998 665554 6899999997665 444555677889999999999 677766 78999999996
Q ss_pred cCCCceeeeeeeeeec-------ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccccee--ee---ecceeeEEEE
Q 047728 292 LQGKGTKHFFSQTLLK-------QECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV--LR---GHKLAILCLV 359 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--~~---~~~~~v~~~~ 359 (474)
......... .....+ ....+.+++|+|+++++++...++.|.+|++......... .. +.....++++
T Consensus 117 ~~g~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s 195 (347)
T 3hfq_A 117 ADGALTLTD-TVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS 195 (347)
T ss_dssp TTSCEEEEE-EEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred CCCCeeecc-eeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence 433211111 111111 2235889999999997776777889999999832211111 11 1123347888
Q ss_pred ecCCEEEE-EeCCCcEEEEECCC--CceEEEEeecCCc------cceEEEEEeeCCccccccceEEE-EEecCCCcEEEE
Q 047728 360 TAGNLVFS-GSADMSICIWRRKE--NEHICLSMLTGHS------GPVKCLAVEKDDESLSREKRWIL-YSGSLDKSVKMW 429 (474)
Q Consensus 360 ~~~~~l~s-gs~dg~i~iwd~~~--~~~~~~~~~~~h~------~~v~~l~~~~~~~~~~~~~~~~l-~s~s~Dg~i~vw 429 (474)
++|+++++ +..++.|.+|++.. ++...+..+.... ..+..++|+|+++ +| ++...++.|.+|
T Consensus 196 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~--------~l~v~~~~~~~v~v~ 267 (347)
T 3hfq_A 196 PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH--------FLYVSNRGYNTLAVF 267 (347)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC--------EEEEEEETTTEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC--------EEEEEeCCCCEEEEE
Confidence 99996665 55788999999874 5433333333322 3588999999998 55 566678999999
Q ss_pred EccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728 430 RVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
++..... ......+..+...+..+ +|+|||+.|..
T Consensus 268 ~~~~~g~----~~~~~~~~~~~~~~~~~----~~spdg~~l~v 302 (347)
T 3hfq_A 268 AVTADGH----LTLIQQISTEGDFPRDF----DLDPTEAFVVV 302 (347)
T ss_dssp EECGGGC----EEEEEEEECSSSCCCEE----EECTTSSEEEE
T ss_pred EECCCCc----EEEeEEEecCCCCcCeE----EECCCCCEEEE
Confidence 9974211 12333444455556666 78999986643
No 149
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=4.5e-19 Score=171.83 Aligned_cols=297 Identities=12% Similarity=0.094 Sum_probs=183.9
Q ss_pred cEEEEEEcCCEEEEeeCCCcEEEEeCCccc------------c-----ccccCccCEEEEEec--CCEEE----EEeCCC
Q 047728 112 HIYSLAAAGDLLYTGSDSKNIRVWKNQREF------------S-----GFKSNSGLVKAIVIS--NEKIF----SGHQDG 168 (474)
Q Consensus 112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~~~~------------~-----~~~~h~~~V~~i~~~--~~~l~----s~~~dg 168 (474)
...++++.+.+|++|+.++ |+||+..... . ....+...|.+++|+ +++|+ +++.|+
T Consensus 40 n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~ 118 (434)
T 2oit_A 40 SLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGS 118 (434)
T ss_dssp BCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEE
T ss_pred cEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCc
Confidence 3445556688999999988 8998632110 0 012345679999998 67888 788999
Q ss_pred eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCC-CCEEEEEECCCcEEEE
Q 047728 169 KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSED-QNLLYSASWDKTFKVW 247 (474)
Q Consensus 169 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~dg~i~iw 247 (474)
.|+|||+.+.......... .. .....+.+|...|.+++|+|+ +.+|++++.||+|++|
T Consensus 119 ~v~iwd~~~~~~~~~~~~~----------------~~-----~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iw 177 (434)
T 2oit_A 119 IIAFFDVRTFSNEAKQQKR----------------PF-----AYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVL 177 (434)
T ss_dssp EEEEEEHHHHHCTTCSSCC----------------CS-----EEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred eEEEEEccccccCCcCCcc----------------ee-----eeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEE
Confidence 9999998754100000000 00 000133459999999999997 8899999999999999
Q ss_pred EcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeee---ecccccEEEEEEcCCCCE
Q 047728 248 RTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL---LKQECAVTALAISPDAAI 323 (474)
Q Consensus 248 d~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~ 323 (474)
|++++..+.....|...|.+++|+|++ +|++|+.||.|++||++ ... . ....... ..|...|.+++|++++.+
T Consensus 178 D~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~-~-~~~~~~~~~~~~~~~~v~~v~w~~~~~~ 254 (434)
T 2oit_A 178 QVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE-K-KVIPCPPFYESDHPVRVLDVLWIGTYVF 254 (434)
T ss_dssp EESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE-E-EEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred EcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc-c-ccccCCcccCCCCceeEEEEEEecCceE
Confidence 999987777777889999999999999 99999999999999987 221 1 1111111 123448999999998877
Q ss_pred EEEE-cCCC------cEEEeecCccccc-ceeee----------ecceeeEEEE--ecCCEEEEEe-CCCcEEEEECCCC
Q 047728 324 VYCG-SSDG------LVNFWERELNLSH-GGVLR----------GHKLAILCLV--TAGNLVFSGS-ADMSICIWRRKEN 382 (474)
Q Consensus 324 l~~~-~~dg------~i~v~d~~~~~~~-~~~~~----------~~~~~v~~~~--~~~~~l~sgs-~dg~i~iwd~~~~ 382 (474)
+++. ..+| .+++|+++..... ...+. +.+.....+. ++.+++++++ ..+.|.|......
T Consensus 255 l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~ 334 (434)
T 2oit_A 255 AIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSD 334 (434)
T ss_dssp EEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTT
T ss_pred EEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCC
Confidence 7543 3333 3889998754211 01111 1111222222 4555555544 4455666654321
Q ss_pred ce-EEEEee------------cCCccceEEEEEeeCCccc---c----ccceEEEEEecCCCcEEEEEccC
Q 047728 383 EH-ICLSML------------TGHSGPVKCLAVEKDDESL---S----REKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 383 ~~-~~~~~~------------~~h~~~v~~l~~~~~~~~~---~----~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
.. .....+ .........+++.-..... . -..-.+|+.-+.||.+..|.+-.
T Consensus 335 ~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 335 QINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp SSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred CCccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 10 001111 1122234455553322210 0 01224788889999999999876
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=7.6e-18 Score=159.62 Aligned_cols=267 Identities=8% Similarity=0.082 Sum_probs=171.9
Q ss_pred CCCcEEEEeCC----ccccccccCccCEEEEEec--CCEEEEEeCC----CeEEEEecCCCCcceeeeecccCccceeee
Q 047728 128 DSKNIRVWKNQ----REFSGFKSNSGLVKAIVIS--NEKIFSGHQD----GKIRVWKVSSKDASIHKRVGTLPTFKDFIK 197 (474)
Q Consensus 128 ~dg~v~vwd~~----~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 197 (474)
.++.|.+|+.. +.......+...+..++|+ +++|++++.+ +.|.+|+++........ +.
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~-~~---------- 93 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL-LN---------- 93 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE-EE----------
T ss_pred CCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE-ee----------
Confidence 46679998632 1111111156667778887 6688888876 79999998864211100 00
Q ss_pred eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeee---ec-----------C
Q 047728 198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVI---AH-----------D 262 (474)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~---~~-----------~ 262 (474)
....+......+++ ++++|++++ .++.|.+|++.....+..+. .+ .
T Consensus 94 -----------------~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~ 154 (361)
T 3scy_A 94 -----------------TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTM 154 (361)
T ss_dssp -----------------EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSS
T ss_pred -----------------EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCC
Confidence 01113445667777 788787776 57899999997543332221 11 2
Q ss_pred cceeEEEecCCC-eEEE-eeCCCcEEEEEcccCCC------ceee-eeeeeeecccccEEEEEEcCCCCEEEEEc-CCCc
Q 047728 263 DAVNSIVAGFDG-LVFT-GSADGTVKVWRRELQGK------GTKH-FFSQTLLKQECAVTALAISPDAAIVYCGS-SDGL 332 (474)
Q Consensus 263 ~~v~~v~~~~~~-~l~~-~~~dg~i~iwd~~~~~~------~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~ 332 (474)
..+.+++|+|++ .+++ ...++.|.+|++..... .... ............+..++|+|+++++++++ .++.
T Consensus 155 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 234 (361)
T 3scy_A 155 PHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT 234 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred CcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence 234789999999 4544 44588999999875432 1110 01122234456688999999999887776 6899
Q ss_pred EEEeecCcccccc-eeeee-----cceeeEEEEecCCEEEEEeCC--CcEEEEECC--CCceEEEEeecCCccceEEEEE
Q 047728 333 VNFWERELNLSHG-GVLRG-----HKLAILCLVTAGNLVFSGSAD--MSICIWRRK--ENEHICLSMLTGHSGPVKCLAV 402 (474)
Q Consensus 333 i~v~d~~~~~~~~-~~~~~-----~~~~v~~~~~~~~~l~sgs~d--g~i~iwd~~--~~~~~~~~~~~~h~~~v~~l~~ 402 (474)
|.+||+.++.... ..... .....++++++|++|+++..+ +.|.+|++. +++...+..+.. ...+.+++|
T Consensus 235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~ 313 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFII 313 (361)
T ss_dssp EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEE
T ss_pred EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEE
Confidence 9999987553211 11111 112357788999998776654 899999996 455444445544 557889999
Q ss_pred eeCCccccccceEEEEEec-CCCcEEEEEccC
Q 047728 403 EKDDESLSREKRWILYSGS-LDKSVKMWRVSE 433 (474)
Q Consensus 403 ~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~ 433 (474)
+|+++ +|++++ .++.|.+|++..
T Consensus 314 spdg~--------~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 314 TPNGK--------YLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp CTTSC--------EEEEEETTTTEEEEEEECT
T ss_pred CCCCC--------EEEEEECCCCCEEEEEEEC
Confidence 99998 666665 779999987753
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=8.5e-20 Score=189.33 Aligned_cols=307 Identities=8% Similarity=0.033 Sum_probs=191.0
Q ss_pred EEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCcc---CEEEEEec--CCEEEEEeC---------CCeEEEEecCCC
Q 047728 115 SLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSG---LVKAIVIS--NEKIFSGHQ---------DGKIRVWKVSSK 178 (474)
Q Consensus 115 ~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~---~V~~i~~~--~~~l~s~~~---------dg~i~vwd~~~~ 178 (474)
+++++|++++++ .|++|++||.. +....+..|.. .|.+++|+ +++|++++. ++.|++||+.++
T Consensus 22 ~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g 100 (719)
T 1z68_A 22 NWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG 100 (719)
T ss_dssp EESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred EECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence 344567655555 59999999954 33333333433 38889998 678888876 789999999887
Q ss_pred CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee
Q 047728 179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV 258 (474)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 258 (474)
+...... ....+..++|+|||+.|+.+. ++.|++||+.+++.....
T Consensus 101 ~~~~~~~---------------------------------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~ 146 (719)
T 1z68_A 101 EFVRGNE---------------------------------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQIT 146 (719)
T ss_dssp EECCSSC---------------------------------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC
T ss_pred cccccee---------------------------------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEe
Confidence 5411000 123578899999999999886 789999999887765432
Q ss_pred -eecCcc-----------------eeEEEecCCC-eEEEeeCCC----------------------------------cE
Q 047728 259 -IAHDDA-----------------VNSIVAGFDG-LVFTGSADG----------------------------------TV 285 (474)
Q Consensus 259 -~~~~~~-----------------v~~v~~~~~~-~l~~~~~dg----------------------------------~i 285 (474)
.++... ..+++|+||| .|++++.|. .|
T Consensus 147 ~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l 226 (719)
T 1z68_A 147 FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI 226 (719)
T ss_dssp CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence 222221 2589999999 777776552 67
Q ss_pred EEEEcccCCCc--eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC----CcEEEee----cCcccccceee---eecc
Q 047728 286 KVWRRELQGKG--TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD----GLVNFWE----RELNLSHGGVL---RGHK 352 (474)
Q Consensus 286 ~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~v~d----~~~~~~~~~~~---~~~~ 352 (474)
++||+..+... ........+..+...+..++|+||++++++.... ..|.+|| ..++....... ..|.
T Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~ 306 (719)
T 1z68_A 227 FIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT 306 (719)
T ss_dssp EEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS
T ss_pred EEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC
Confidence 88888643210 0000001233577789999999998777764322 2488899 76664432221 3444
Q ss_pred ee-------eEEEEecCCEEEE--EeCCC--cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEec
Q 047728 353 LA-------ILCLVTAGNLVFS--GSADM--SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421 (474)
Q Consensus 353 ~~-------v~~~~~~~~~l~s--gs~dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s 421 (474)
.. ...++++|+.++. ...+| .|.+||+.+++ ...+..+...+..+.+. +++. +++++.
T Consensus 307 ~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~---~~~lt~~~~~v~~~~~~-d~~~-------i~~~~~ 375 (719)
T 1z68_A 307 GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN---AIQITSGKWEAINIFRV-TQDS-------LFYSSN 375 (719)
T ss_dssp SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---CEECSCSSSCEEEEEEE-CSSE-------EEEEES
T ss_pred ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---eEecccCceEEEEEEEE-eCCE-------EEEEEe
Confidence 32 4578899985544 44555 56777777665 33555666678888877 6662 455554
Q ss_pred C----CCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728 422 L----DKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ 471 (474)
Q Consensus 422 ~----Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~ 471 (474)
. ++.+++|.+...............+.+|...+.. ++||+||+.++
T Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~----~~~s~dg~~l~ 425 (719)
T 1z68_A 376 EFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYT----ASFSDYAKYYA 425 (719)
T ss_dssp CGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEE----EEECGGGSSEE
T ss_pred cCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEE----EEECCCCCEEE
Confidence 4 5889999987521100000111112223333333 47888888766
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.84 E-value=5e-19 Score=183.15 Aligned_cols=291 Identities=10% Similarity=0.080 Sum_probs=190.7
Q ss_pred CcEEEEEEcC-CEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCC-----CCcc
Q 047728 111 GHIYSLAAAG-DLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSS-----KDAS 181 (474)
Q Consensus 111 ~~i~~~~~~~-~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~-----~~~~ 181 (474)
..|.+++++. +.++.+. ++.|++||.. .....+..+...+..++|+ +++|+++ .|+.|++|++.+ ++..
T Consensus 82 ~~v~~~~~spd~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~ 159 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI 159 (706)
T ss_dssp CCCEEEEETTTTEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE
T ss_pred cCceeEEECCCCeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE
Confidence 4578877763 4555543 5999999965 3344455567778888898 5678774 689999999988 5543
Q ss_pred eeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE----------------------
Q 047728 182 IHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS---------------------- 239 (474)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s---------------------- 239 (474)
........ .+. .... +...+...+.+++|+||+++|++++
T Consensus 160 ~~~~~~~~----~~~------------~g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~ 221 (706)
T 2z3z_A 160 AVTIDGTE----TLV------------YGQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESK 221 (706)
T ss_dssp ESCSCCBT----TEE------------ESSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEE
T ss_pred EeccCCCC----CeE------------cccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceE
Confidence 21110000 000 0000 1122334578999999999999987
Q ss_pred -----------CCCcEEEEEcCCcceeeeee--ecCcceeEEEecCCC-eEEEeeCCC-----cEEEEEcccCCCceeee
Q 047728 240 -----------WDKTFKVWRTSDYKCLESVI--AHDDAVNSIVAGFDG-LVFTGSADG-----TVKVWRRELQGKGTKHF 300 (474)
Q Consensus 240 -----------~dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~-~l~~~~~dg-----~i~iwd~~~~~~~~~~~ 300 (474)
.+..|++||+.+++...... .|...+.+++|+||+ .|++++.++ .|++||+..+..... .
T Consensus 222 ~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~-~ 300 (706)
T 2z3z_A 222 PLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT-L 300 (706)
T ss_dssp EECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE-E
T ss_pred EeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE-E
Confidence 44779999999887654432 466789999999999 688777665 899999875422111 0
Q ss_pred eeeeeecccccEEEEEEcC--CCCEEEEEcCCCcEEEeecC-cccccceeeeecceee---EEEEecCCEEEEEeC-CC-
Q 047728 301 FSQTLLKQECAVTALAISP--DAAIVYCGSSDGLVNFWERE-LNLSHGGVLRGHKLAI---LCLVTAGNLVFSGSA-DM- 372 (474)
Q Consensus 301 ~~~~~~~~~~~v~~l~~~~--~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~v---~~~~~~~~~l~sgs~-dg- 372 (474)
...........+..++|+| ++++++++..|+.+++|+++ .+... ..+..+...+ .+++++++.|+.++. ++
T Consensus 301 ~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~-~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~ 379 (706)
T 2z3z_A 301 FVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI-RQVTKGEWEVTNFAGFDPKGTRLYFESTEASP 379 (706)
T ss_dssp EEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE-EECCCSSSCEEEEEEECTTSSEEEEEESSSCT
T ss_pred EEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE-EecCCCCeEEEeeeEEcCCCCEEEEEecCCCC
Confidence 0001011112346789999 99999999999999999876 33222 3334444333 577888987766554 44
Q ss_pred ---cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEe-cCC---CcEEEEEccCCC
Q 047728 373 ---SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSG-SLD---KSVKMWRVSEQA 435 (474)
Q Consensus 373 ---~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~-s~D---g~i~vw~~~~~~ 435 (474)
.|..||..+++. ..+. |...+.+++|+|+++ +|+.. +.+ +.|++||+.+++
T Consensus 380 ~~~~l~~~d~~~~~~---~~l~-~~~~~~~~~~spdg~--------~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 380 LERHFYCIDIKGGKT---KDLT-PESGMHRTQLSPDGS--------AIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TCBEEEEEETTCCCC---EESC-CSSSEEEEEECTTSS--------EEEEEEECSSCSCEEEEEESSSCE
T ss_pred ceEEEEEEEcCCCCc---eecc-CCCceEEEEECCCCC--------EEEEEecCCCCCcEEEEEECCCCe
Confidence 667777776652 2333 667799999999998 55554 333 569999987763
No 153
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=1.4e-19 Score=175.35 Aligned_cols=202 Identities=10% Similarity=0.130 Sum_probs=147.6
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc----------eee-----eeeecCcceeEEEecCCC-eEE----Ee
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK----------CLE-----SVIAHDDAVNSIVAGFDG-LVF----TG 279 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~----------~~~-----~~~~~~~~v~~v~~~~~~-~l~----~~ 279 (474)
...++.+++++++.++++++.|+ +++|+..... .+. ....+...|.+++|++++ +|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34678999999999999999888 9998753210 010 112345679999999999 777 78
Q ss_pred eCCCcEEEEEcccCC-----CceeeeeeeeeecccccEEEEEEcCC-CCEEEEEcCCCcEEEeecCcccccceeeeecce
Q 047728 280 SADGTVKVWRRELQG-----KGTKHFFSQTLLKQECAVTALAISPD-AAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL 353 (474)
Q Consensus 280 ~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 353 (474)
+.|+.|++||++... ............+|...|.+++|+|+ +.+|++++.||.|++||+++.... ....+|..
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-~~~~~~~~ 193 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-CATLPSTV 193 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-EEEECGGG
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-eeccCCCC
Confidence 899999999987641 11111123455678999999999997 899999999999999999887443 23345655
Q ss_pred ee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC-------CccceEEEEEeeCCccccccceEEEE-EecCC
Q 047728 354 AI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG-------HSGPVKCLAVEKDDESLSREKRWILY-SGSLD 423 (474)
Q Consensus 354 ~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~~~~~~~~l~-s~s~D 423 (474)
.+ ++++++|++|++|+.||.|++||.+ ++. ...+.. |...|.+++|+++.. +++ ....|
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~--~~~~~~~~~~~~~~~~~v~~v~w~~~~~--------~l~~~~~~d 262 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE--KKVIPCPPFYESDHPVRVLDVLWIGTYV--------FAIVYAAAD 262 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-CCE--EEEECCCTTCCTTSCEEEEEEEEEETTE--------EEEEEEETT
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc--cccccCCcccCCCCceeEEEEEEecCce--------EEEEEccCC
Confidence 55 5556689999999999999999998 332 223322 334899999999876 443 34455
Q ss_pred Cc------EEEEEccCC
Q 047728 424 KS------VKMWRVSEQ 434 (474)
Q Consensus 424 g~------i~vw~~~~~ 434 (474)
|. +++|++...
T Consensus 263 g~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 263 GTLETSPDVVMALLPKK 279 (434)
T ss_dssp CCSSSCCEEEEEECCCT
T ss_pred CccCCCCceEEEEeccC
Confidence 43 899999865
No 154
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=9e-19 Score=181.76 Aligned_cols=278 Identities=8% Similarity=-0.024 Sum_probs=177.7
Q ss_pred ceeeeeeeeecC---cEEEEE--EcCCEEEEeeCC---------CcEEEEeCCcc----ccccccCccCEEEEEec--CC
Q 047728 100 NVLIGSLVREEG---HIYSLA--AAGDLLYTGSDS---------KNIRVWKNQRE----FSGFKSNSGLVKAIVIS--NE 159 (474)
Q Consensus 100 ~~~~~~l~~h~~---~i~~~~--~~~~~l~tgs~d---------g~v~vwd~~~~----~~~~~~h~~~V~~i~~~--~~ 159 (474)
.+....+.+|.. .|.+++ ++|++|++++.+ +.|++||.... +.....|...+..++|+ ++
T Consensus 47 g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~ 126 (723)
T 1xfd_A 47 NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQ 126 (723)
T ss_dssp CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTT
T ss_pred CcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCC
Confidence 344445555554 266655 559999998764 77889995532 23334455568888898 66
Q ss_pred EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc---------CCeeEEEecC
Q 047728 160 KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF---------DAISSLSMSE 230 (474)
Q Consensus 160 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~V~~l~~~~ 230 (474)
.|+.++. +.|++|++.+++.......... ..++.++. ..+.+++|+|
T Consensus 127 ~la~~~~-~~i~~~~~~~g~~~~~~~~~~~-----------------------~~~~~g~~~~v~~ee~~~~~~~~~~Sp 182 (723)
T 1xfd_A 127 QLIFIFE-NNIYYCAHVGKQAIRVVSTGKE-----------------------GVIYNGLSDWLYEEEILKTHIAHWWSP 182 (723)
T ss_dssp CEEEEET-TEEEEESSSSSCCEEEECCCBT-----------------------TTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred EEEEEEC-CeEEEEECCCCceEEEecCCCC-----------------------CceECcccceeEEEEeccCcceEEECC
Confidence 8888876 7899999988765422111000 00111222 2348999999
Q ss_pred CCCEEEEEECCC----------------------------------cEEEEEcCCcceeeeeeec------CcceeEEEe
Q 047728 231 DQNLLYSASWDK----------------------------------TFKVWRTSDYKCLESVIAH------DDAVNSIVA 270 (474)
Q Consensus 231 ~~~~l~s~s~dg----------------------------------~i~iwd~~~~~~~~~~~~~------~~~v~~v~~ 270 (474)
||+.|++++.|+ .|++||+.+++....+..+ ...+..++|
T Consensus 183 Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 262 (723)
T 1xfd_A 183 DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKW 262 (723)
T ss_dssp TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEE
T ss_pred CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEE
Confidence 999999887653 7999999988865666544 567899999
Q ss_pred cCCC-eEEEeeC----CCcEEEEEcccCCCceeeeeeeee-ecccccE----EEEEEcCCCCEEEE--EcCCC------c
Q 047728 271 GFDG-LVFTGSA----DGTVKVWRRELQGKGTKHFFSQTL-LKQECAV----TALAISPDAAIVYC--GSSDG------L 332 (474)
Q Consensus 271 ~~~~-~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v----~~l~~~~~~~~l~~--~~~dg------~ 332 (474)
+||+ .+++... +..|++||+..+.. .... ..+...+ ..++|+|+|+.|+. +..++ .
T Consensus 263 SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~------~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 336 (723)
T 1xfd_A 263 ATSTKVAVTWLNRAQNVSILTLCDATTGVC------TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH 336 (723)
T ss_dssp SSSSEEEEEEEETTSCEEEEEEEETTTCCE------EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred eCCCeEEEEEEcCCCCeEEEEEEeCCCCcc------eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE
Confidence 9999 5545433 35799999875432 1111 1222333 37899999997765 45666 5
Q ss_pred EEEee-cCcccc--cceeeeecce--eeEEEEecCCEEEEEeCC---CcEEEEECCCCceEEEEeecC---CccceEEEE
Q 047728 333 VNFWE-RELNLS--HGGVLRGHKL--AILCLVTAGNLVFSGSAD---MSICIWRRKENEHICLSMLTG---HSGPVKCLA 401 (474)
Q Consensus 333 i~v~d-~~~~~~--~~~~~~~~~~--~v~~~~~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~~~---h~~~v~~l~ 401 (474)
|.+|| ...+.. ...+..++.. .+.+++++++.|+..+.+ +.++||++..........+.. |...+..++
T Consensus 337 l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 416 (723)
T 1xfd_A 337 ITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSAS 416 (723)
T ss_dssp EEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEE
T ss_pred EEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEE
Confidence 77777 343330 2222222222 235789999998766555 789999986432111223433 677789999
Q ss_pred EeeCCc
Q 047728 402 VEKDDE 407 (474)
Q Consensus 402 ~~~~~~ 407 (474)
|+|+++
T Consensus 417 ~spdg~ 422 (723)
T 1xfd_A 417 FSHSMD 422 (723)
T ss_dssp ECTTSS
T ss_pred ECCCCC
Confidence 999998
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=1.2e-18 Score=176.21 Aligned_cols=262 Identities=11% Similarity=0.062 Sum_probs=182.2
Q ss_pred cCcEEEEE--EcCCEEEEeeC-CCcEEEEeCC-ccccccccCc-cCEEEEEecCCE-EEEEeC---CCeEEEEecCC--C
Q 047728 110 EGHIYSLA--AAGDLLYTGSD-SKNIRVWKNQ-REFSGFKSNS-GLVKAIVISNEK-IFSGHQ---DGKIRVWKVSS--K 178 (474)
Q Consensus 110 ~~~i~~~~--~~~~~l~tgs~-dg~v~vwd~~-~~~~~~~~h~-~~V~~i~~~~~~-l~s~~~---dg~i~vwd~~~--~ 178 (474)
..+|++++ ++|++||+++. ||+++||+.. .....+..|. ..+..++|+++. +++++. +...++|.++. .
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCC
Confidence 45677766 56999999887 9999999843 2334444555 689999998554 455554 45567776654 2
Q ss_pred CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCE-EEEEECCCcEEEEEcCCcceeee
Q 047728 179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNL-LYSASWDKTFKVWRTSDYKCLES 257 (474)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~ 257 (474)
.... .+. ....+...+|+|+++. +++.+.++.+.+||+.+++....
T Consensus 101 g~~~--~l~-------------------------------~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l 147 (582)
T 3o4h_A 101 GEEQ--RLE-------------------------------AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL 147 (582)
T ss_dssp TCCE--ECT-------------------------------TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE
T ss_pred Cccc--ccc-------------------------------CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe
Confidence 2111 111 1123345677887753 34444455566999998876555
Q ss_pred eeecCcceeEEEecCCC-eEEEeeCC----CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-
Q 047728 258 VIAHDDAVNSIVAGFDG-LVFTGSAD----GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG- 331 (474)
Q Consensus 258 ~~~~~~~v~~v~~~~~~-~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg- 331 (474)
...+ . .+++|+||| .+++++.+ +.|++||+..+.. ..+..+...+..++|+|||+.|+++..++
T Consensus 148 ~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~-------~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~ 217 (582)
T 3o4h_A 148 ARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-------RVFDSGEGSFSSASISPGMKVTAGLETARE 217 (582)
T ss_dssp EEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-------EEECCSSCEEEEEEECTTSCEEEEEECSSC
T ss_pred ecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-------eEeecCCCccccceECCCCCEEEEccCCCe
Confidence 4433 3 889999999 77777766 7799999875542 34566778899999999999999888888
Q ss_pred -cEEEeecCcccccceeeeecceee--EE--------EEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEE
Q 047728 332 -LVNFWERELNLSHGGVLRGHKLAI--LC--------LVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCL 400 (474)
Q Consensus 332 -~i~v~d~~~~~~~~~~~~~~~~~v--~~--------~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l 400 (474)
.|++||+.++... ....|...+ .. ++++|.++++++.|+.+++|++ ++. .. ...+.|.++
T Consensus 218 ~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~--~~---~~~~~v~~~ 288 (582)
T 3o4h_A 218 ARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GER--VE---APQGNHGRV 288 (582)
T ss_dssp EEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEE--EC---CCSSEEEEE
T ss_pred eEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCe--ec---cCCCceEEE
Confidence 8999999877654 444443322 23 8899999999999999999999 542 22 344678999
Q ss_pred EEeeCCccccccceEEEEEecCCCc---EEEEEcc
Q 047728 401 AVEKDDESLSREKRWILYSGSLDKS---VKMWRVS 432 (474)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~s~s~Dg~---i~vw~~~ 432 (474)
+|+ ++. ++++++.+.. |.+|+..
T Consensus 289 ~~s-dg~--------~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 289 VLW-RGK--------LVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEE-TTE--------EEEEEEETTEEEEEEEETTC
T ss_pred Eec-CCE--------EEEEEcCCCCCCeEEEEcCC
Confidence 999 887 7788777654 5555544
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=2.2e-18 Score=162.18 Aligned_cols=226 Identities=11% Similarity=0.044 Sum_probs=159.5
Q ss_pred CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728 158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS 237 (474)
Q Consensus 158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 237 (474)
+..+++++.++.|++||+.+++........ ....+..++|+|+++++++
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~-------------------------------~~~~~~~~~~s~dg~~~~v 59 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMP-------------------------------DKFGPGTAMMAPDNRTAYV 59 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECS-------------------------------SCCSSCEEEECTTSSEEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecC-------------------------------CCCCCceeEECCCCCEEEE
Confidence 557889999999999999887543222110 1124678999999987654
Q ss_pred -EECCCcEEEEEcCCcceeeeeeecC------cceeEEEecCCC-eEEEeeCC------------CcEEEEEcccCCCce
Q 047728 238 -ASWDKTFKVWRTSDYKCLESVIAHD------DAVNSIVAGFDG-LVFTGSAD------------GTVKVWRRELQGKGT 297 (474)
Q Consensus 238 -~s~dg~i~iwd~~~~~~~~~~~~~~------~~v~~v~~~~~~-~l~~~~~d------------g~i~iwd~~~~~~~~ 297 (474)
...++.|.+||+.+++.+..+.... ..+..++|+|++ .+++++.+ +.|.+||+.......
T Consensus 60 ~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 60 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred EeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc
Confidence 4568999999999998887775432 337899999999 77777755 899999997633211
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeec--------------------------
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGH-------------------------- 351 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-------------------------- 351 (474)
.. ....+...+.+++|+|+++ +++++. .|.+||+.++........+.
T Consensus 140 ---~~-~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 140 ---PV-RTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp ---CS-EEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ---ee-eeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 11 1122334688999999999 665544 49999987764332211110
Q ss_pred -------------------------------------------ceeeEEEEe-cCCEEEEEeCCCcEEEEECCCCceEEE
Q 047728 352 -------------------------------------------KLAILCLVT-AGNLVFSGSADMSICIWRRKENEHICL 387 (474)
Q Consensus 352 -------------------------------------------~~~v~~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~ 387 (474)
.....++++ ++++++++ ++.|.+||+.+++..
T Consensus 213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~-- 288 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI-- 288 (349)
T ss_dssp EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE--
T ss_pred eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE--
Confidence 011234557 89999888 889999999988743
Q ss_pred EeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 388 SMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 388 ~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
..+.. ...+.+++|+|+++ +|++++.++.|++||+.++
T Consensus 289 ~~~~~-~~~~~~~~~s~dg~--------~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 289 KAANL-DHTYYCVAFDKKGD--------KLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EEEEC-SSCCCEEEECSSSS--------CEEEESBSSEEEEEETTTT
T ss_pred EEEcC-CCCccceEECCCCC--------EEEEecCCCeEEEEecccc
Confidence 33332 34578999999998 6777888999999999876
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=1.8e-17 Score=157.02 Aligned_cols=236 Identities=14% Similarity=0.152 Sum_probs=152.0
Q ss_pred ccCCeeEEEecCCCCEEEEEECC----CcEEEEEcCC--cce--eeeeeecCcceeEEEecCCC-eEEEee-CCCcEEEE
Q 047728 219 HFDAISSLSMSEDQNLLYSASWD----KTFKVWRTSD--YKC--LESVIAHDDAVNSIVAGFDG-LVFTGS-ADGTVKVW 288 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~d----g~i~iwd~~~--~~~--~~~~~~~~~~v~~v~~~~~~-~l~~~~-~dg~i~iw 288 (474)
+...+..++|+|++++|++++.+ +.|.+|++.. ++. +.....+......+++ ++ .+++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 55667789999999999999886 7999998865 432 3333445556777787 55 555544 68899999
Q ss_pred EcccCCCceeeeeeeee--------ecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccc------cc------ee
Q 047728 289 RRELQGKGTKHFFSQTL--------LKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLS------HG------GV 347 (474)
Q Consensus 289 d~~~~~~~~~~~~~~~~--------~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~------~~------~~ 347 (474)
++............... ..+...+.+++|+|++++|++++ .++.|.+|++..... +. ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 99754322111110011 11233468899999999766554 588999998875431 10 11
Q ss_pred ee--ecceeeEEEEecCCEEEEEe-CCCcEEEEECCCCceEEEEee---cCCccceEEEEEeeCCccccccceEEEEEec
Q 047728 348 LR--GHKLAILCLVTAGNLVFSGS-ADMSICIWRRKENEHICLSML---TGHSGPVKCLAVEKDDESLSREKRWILYSGS 421 (474)
Q Consensus 348 ~~--~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s 421 (474)
.. +.....++++++++++++++ .++.|.+||+.+++...+..+ ..+......++|+|+++ +|+++.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~--------~l~v~~ 277 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGK--------YLYASN 277 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSS--------EEEEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCC--------EEEEEC
Confidence 11 22233478889999888777 689999999987754333333 33345578999999998 675555
Q ss_pred C--CCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728 422 L--DKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 422 ~--Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
. ++.|.+|++....... .....+.. ...+..+ +|+|||++|..
T Consensus 278 ~~~~~~i~v~~~~~~~g~~---~~~~~~~~-g~~~~~~----~~spdg~~l~~ 322 (361)
T 3scy_A 278 RLKADGVAIFKVDETNGTL---TKVGYQLT-GIHPRNF----IITPNGKYLLV 322 (361)
T ss_dssp CSSSCEEEEEEECTTTCCE---EEEEEEEC-SSCCCEE----EECTTSCEEEE
T ss_pred CCCCCEEEEEEEcCCCCcE---EEeeEecC-CCCCceE----EECCCCCEEEE
Confidence 4 5899999996321111 12222222 3345556 78899986654
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=2.9e-19 Score=180.70 Aligned_cols=251 Identities=6% Similarity=-0.000 Sum_probs=174.2
Q ss_pred ccCEEEEEec--CCEEEEEeC-CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc-CCe
Q 047728 148 SGLVKAIVIS--NEKIFSGHQ-DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF-DAI 223 (474)
Q Consensus 148 ~~~V~~i~~~--~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V 223 (474)
..+|.+++++ +++|++++. ||+++||+++.++... +..|. ..+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~---------------------------------lt~~~~~~~ 67 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK---------------------------------LNREPINSV 67 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE---------------------------------CCSSCCSEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe---------------------------------eeccccccc
Confidence 5579999887 789998877 9999999986654321 11133 578
Q ss_pred eEEEecCCCCEEEEEEC---CCcEEEEEcCC---cceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCC
Q 047728 224 SSLSMSEDQNLLYSASW---DKTFKVWRTSD---YKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGK 295 (474)
Q Consensus 224 ~~l~~~~~~~~l~s~s~---dg~i~iwd~~~---~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~ 295 (474)
..++|+|| +++++++. +....+|.+.. +... .+.. ...+...+|+|++ .+++...++.+.+||+..+..
T Consensus 68 ~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~ 144 (582)
T 3o4h_A 68 LDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL 144 (582)
T ss_dssp CEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE
T ss_pred ccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE
Confidence 99999999 77777775 45556655432 2222 3322 2233456777777 455555556666999875421
Q ss_pred ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC----CcEEEeecCcccccceeeeecce--eeEEEEecCCEEEEEe
Q 047728 296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD----GLVNFWERELNLSHGGVLRGHKL--AILCLVTAGNLVFSGS 369 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sgs 369 (474)
..+..+.. .+++|+|||++|++++.+ +.|++||+.++... .+..|.. ...+++|||++|+++.
T Consensus 145 -------~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~--~l~~~~~~~~~~~~SpDG~~l~~~~ 213 (582)
T 3o4h_A 145 -------RELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR--VFDSGEGSFSSASISPGMKVTAGLE 213 (582)
T ss_dssp -------EEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE--EECCSSCEEEEEEECTTSCEEEEEE
T ss_pred -------EEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce--EeecCCCccccceECCCCCEEEEcc
Confidence 11112222 789999999999988777 78999998877543 3444544 3467888999999888
Q ss_pred CCC--cEEEEECCCCceEEEEeecCCccceEEEE--------EeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCC
Q 047728 370 ADM--SICIWRRKENEHICLSMLTGHSGPVKCLA--------VEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLV 439 (474)
Q Consensus 370 ~dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~--------~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~ 439 (474)
.++ .|++||+.+++. . .+.+|...+..++ |+||+. ++++++.|+.+++|++ ++.
T Consensus 214 ~~~~~~i~~~d~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~spdg~--------~~~~~~~~g~~~l~~~--g~~--- 277 (582)
T 3o4h_A 214 TAREARLVTVDPRDGSV--E-DLELPSKDFSSYRPTAITWLGYLPDGR--------LAVVARREGRSAVFID--GER--- 277 (582)
T ss_dssp CSSCEEEEEECTTTCCE--E-ECCCSCSHHHHHCCSEEEEEEECTTSC--------EEEEEEETTEEEEEET--TEE---
T ss_pred CCCeeEEEEEcCCCCcE--E-EccCCCcChhhhhhccccceeEcCCCc--------EEEEEEcCCcEEEEEE--CCe---
Confidence 888 899999998874 3 6677877777777 999996 8999999999999999 321
Q ss_pred CCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728 440 STTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 440 ~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
.. .....+.++ +|+ ||+++++.
T Consensus 278 ----~~---~~~~~v~~~----~~s-dg~~l~~~ 299 (582)
T 3o4h_A 278 ----VE---APQGNHGRV----VLW-RGKLVTSH 299 (582)
T ss_dssp ----EC---CCSSEEEEE----EEE-TTEEEEEE
T ss_pred ----ec---cCCCceEEE----Eec-CCEEEEEE
Confidence 11 112334444 677 89888754
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=3.2e-17 Score=155.57 Aligned_cols=242 Identities=11% Similarity=0.094 Sum_probs=161.0
Q ss_pred cCEEEEEec--CCEEEEEeCCCeEEEEecC-CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728 149 GLVKAIVIS--NEKIFSGHQDGKIRVWKVS-SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS 225 (474)
Q Consensus 149 ~~V~~i~~~--~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 225 (474)
..+..++++ +++|++++.+ .|.+|+++ +++....... ..+ +.+.+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~------------------------------~~~-g~~~~ 87 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH------------------------------PIG-GHPRA 87 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE------------------------------ECC-SSGGG
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe------------------------------ecC-CCCcc
Confidence 457788887 6688888888 89999997 5533211100 001 12455
Q ss_pred EEecCCCCE--EEEEE-------------CCCcEEEEEcC-Ccceeeeeee----cCcceeEEEecCCC-eEEEee-CCC
Q 047728 226 LSMSEDQNL--LYSAS-------------WDKTFKVWRTS-DYKCLESVIA----HDDAVNSIVAGFDG-LVFTGS-ADG 283 (474)
Q Consensus 226 l~~~~~~~~--l~s~s-------------~dg~i~iwd~~-~~~~~~~~~~----~~~~v~~v~~~~~~-~l~~~~-~dg 283 (474)
++|+|++++ ++++. .++.+.+|++. +++....+.. +...+.+++|+|+| .++++. .++
T Consensus 88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~ 167 (365)
T 1jof_A 88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTAN 167 (365)
T ss_dssp GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCC
Confidence 889999984 44543 68999999997 4665544432 45678999999999 566655 468
Q ss_pred cEEEEEcc-cCCCceeeeeeeeee--cccccEEEEEEcCCCCEEEEEcC-CCcEEEeecC--cccccc-----eee----
Q 047728 284 TVKVWRRE-LQGKGTKHFFSQTLL--KQECAVTALAISPDAAIVYCGSS-DGLVNFWERE--LNLSHG-----GVL---- 348 (474)
Q Consensus 284 ~i~iwd~~-~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~--~~~~~~-----~~~---- 348 (474)
.|++||+. .+.. ....... .+...+..++|+|++++|++++. ++.|.+|+++ ++.... ..+
T Consensus 168 ~v~~~~~~~~g~~----~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 168 KLWTHRKLASGEV----ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp EEEEEEECTTSCE----EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred EEEEEEECCCCCE----EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 99999997 3221 1111222 23567999999999999887765 6899999765 332210 111
Q ss_pred eecc--------eeeEE-EEecCCEEEEEeCCC------cEEEEECC-CCceEEEE-eecCCccceEEEEEee---CCcc
Q 047728 349 RGHK--------LAILC-LVTAGNLVFSGSADM------SICIWRRK-ENEHICLS-MLTGHSGPVKCLAVEK---DDES 408 (474)
Q Consensus 349 ~~~~--------~~v~~-~~~~~~~l~sgs~dg------~i~iwd~~-~~~~~~~~-~~~~h~~~v~~l~~~~---~~~~ 408 (474)
.+|. ..-++ ++++|++|+++..+. .|.+|++. +++...+. ....+...+..++|+| +++
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~- 322 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE- 322 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT-
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC-
Confidence 1222 33467 889999988776432 89999996 55533222 2334555677899999 788
Q ss_pred ccccceEEEEEecC-CCcEEEEEccCC
Q 047728 409 LSREKRWILYSGSL-DKSVKMWRVSEQ 434 (474)
Q Consensus 409 ~~~~~~~~l~s~s~-Dg~i~vw~~~~~ 434 (474)
+|++++. ++.|++|++...
T Consensus 323 -------~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 323 -------WMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -------EEEEECSSSCEEEEEEEETT
T ss_pred -------EEEEEEcCCCeEEEEEEchh
Confidence 7877775 589999999765
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=1.4e-17 Score=156.54 Aligned_cols=236 Identities=11% Similarity=0.087 Sum_probs=161.1
Q ss_pred EcCCEEEEeeCCCcEEEEeCC--ccccccccCc-cCEEEEEec--CCEE-EEEeCCCeEEEEecCCCCcceeeeecccCc
Q 047728 118 AAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNS-GLVKAIVIS--NEKI-FSGHQDGKIRVWKVSSKDASIHKRVGTLPT 191 (474)
Q Consensus 118 ~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~-~~V~~i~~~--~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 191 (474)
.+++++++++.++.|++||.. +....+..+. ..+..++++ ++++ +++..++.|.+||+.+++..........+
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~- 87 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP- 87 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST-
T ss_pred CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc-
Confidence 346789999999999999964 3334444332 246678887 5555 45567899999999887544322211000
Q ss_pred cceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC------------CcEEEEEcCCccee---e
Q 047728 192 FKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD------------KTFKVWRTSDYKCL---E 256 (474)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d------------g~i~iwd~~~~~~~---~ 256 (474)
......+.+++|+|++++|++++.+ +.|.+||+.+++.. .
T Consensus 88 -------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 142 (349)
T 1jmx_B 88 -------------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR 142 (349)
T ss_dssp -------------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE
T ss_pred -------------------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee
Confidence 0012347789999999999998865 89999999885543 3
Q ss_pred eeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeee---------------------------------
Q 047728 257 SVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQ--------------------------------- 303 (474)
Q Consensus 257 ~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------------------------------- 303 (474)
.+. +...+.+++|+|++.+++++ +.|.+||+.............
T Consensus 143 ~~~-~~~~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (349)
T 1jmx_B 143 TFP-MPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 219 (349)
T ss_dssp EEE-CCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred ecc-CCCcccceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec
Confidence 333 34468899999999655544 349999986543211000000
Q ss_pred -----------------------------eeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeecce
Q 047728 304 -----------------------------TLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL 353 (474)
Q Consensus 304 -----------------------------~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 353 (474)
........+..++|+| ++++++++ ++.|.+||+.+.........++..
T Consensus 220 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~ 297 (349)
T 1jmx_B 220 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTY 297 (349)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCC
T ss_pred CCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCc
Confidence 0000122466788899 99999988 889999999887655444445555
Q ss_pred eeEEEEecCCEEEEEeCCCcEEEEECCCCce
Q 047728 354 AILCLVTAGNLVFSGSADMSICIWRRKENEH 384 (474)
Q Consensus 354 ~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~ 384 (474)
..+++++++++|++++.++.|.+||..+++.
T Consensus 298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 298 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred cceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 5678889999888888899999999998874
No 161
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=8.3e-17 Score=152.16 Aligned_cols=288 Identities=13% Similarity=0.128 Sum_probs=187.1
Q ss_pred CCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEe----------CCCeEEEEecCCCCcceeeeecccCccc
Q 047728 128 DSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGH----------QDGKIRVWKVSSKDASIHKRVGTLPTFK 193 (474)
Q Consensus 128 ~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 193 (474)
.|+.|.+||.. +.+..+..+..+ .++++ +++++++. .++.|.+||..+.+..........
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~---- 102 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK---- 102 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT----
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc----
Confidence 47799999943 445555555554 78887 66888876 367899999987665433322100
Q ss_pred eeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC--CCcEEEEEcCCcceeee-eeecCcceeEEEe
Q 047728 194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW--DKTFKVWRTSDYKCLES-VIAHDDAVNSIVA 270 (474)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~v~~ 270 (474)
. ..+......++++|++++|+++.. ++.|.+||+.+++.+.. +.. .. ...+.+
T Consensus 103 ---------------------~-~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~ 158 (361)
T 2oiz_A 103 ---------------------R-VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIP 158 (361)
T ss_dssp ---------------------B-CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEE
T ss_pred ---------------------c-cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEE
Confidence 0 002345668999999999998874 58999999999988776 532 22 223556
Q ss_pred cCCC--eEEEeeCCCcEEEEEcccCCCceeeeee-eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc-e
Q 047728 271 GFDG--LVFTGSADGTVKVWRRELQGKGTKHFFS-QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG-G 346 (474)
Q Consensus 271 ~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-~ 346 (474)
.|++ .+++.+.||.+.+|++....+....... ..+.....+ ..+.+.+++..++..+.++.|.++|+....... .
T Consensus 159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~ 237 (361)
T 2oiz_A 159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG 237 (361)
T ss_dssp CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence 7766 7888899999999998643321100000 111111112 123345667777777888999999986442111 0
Q ss_pred ee------------eecceeeEEEEecCCEEEEEeC-----------CCcEEEEECCCCceEEEEeecCCccceEEEEEe
Q 047728 347 VL------------RGHKLAILCLVTAGNLVFSGSA-----------DMSICIWRRKENEHICLSMLTGHSGPVKCLAVE 403 (474)
Q Consensus 347 ~~------------~~~~~~v~~~~~~~~~l~sgs~-----------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~ 403 (474)
.. .......++++++++.++++.. .+.|.+||+.+.+ .+..+..+. +.+++|+
T Consensus 238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~~~--p~~ia~s 313 (361)
T 2oiz_A 238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPGRD--ALSMTID 313 (361)
T ss_dssp EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEECTT--CCEEEEE
T ss_pred cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEecCC--eeEEEEC
Confidence 00 0111223688999888877643 3589999999987 456677666 9999999
Q ss_pred eCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCc
Q 047728 404 KDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGR 468 (474)
Q Consensus 404 ~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~ 468 (474)
|+++ +|++++. +.|.+||..++.. +....+..+...+..+ +++|||+
T Consensus 314 pdg~--------~l~v~n~-~~v~v~D~~t~~l-----~~~~~i~~~G~~P~~~----~~~p~G~ 360 (361)
T 2oiz_A 314 QQRN--------LMLTLDG-GNVNVYDISQPEP-----KLLRTIEGAAEASLQV----QFHPVGG 360 (361)
T ss_dssp TTTT--------EEEEECS-SCEEEEECSSSSC-----EEEEEETTSCSSEEEE----EECCCSC
T ss_pred CCCC--------EEEEeCC-CeEEEEECCCCcc-----eeeEEeccCCCCcEEE----EecCCCC
Confidence 9999 7888776 9999999988622 1223333444555566 6788886
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=3.1e-17 Score=156.85 Aligned_cols=279 Identities=11% Similarity=0.003 Sum_probs=176.4
Q ss_pred ccccccccCccCEEE-----EEec--CCEEEEEeC-CCe--EEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEE
Q 047728 139 REFSGFKSNSGLVKA-----IVIS--NEKIFSGHQ-DGK--IRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEV 208 (474)
Q Consensus 139 ~~~~~~~~h~~~V~~-----i~~~--~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (474)
..+..+..|...... .+|+ +++|+.++. +|. |.+||+.+++.....
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt------------------------ 76 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT------------------------ 76 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC------------------------
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee------------------------
Confidence 445556666655555 5676 678888877 674 777888776543211
Q ss_pred eeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEE--ecCCC-eEEE-------
Q 047728 209 RRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV--AGFDG-LVFT------- 278 (474)
Q Consensus 209 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~--~~~~~-~l~~------- 278 (474)
.++...+..++|+|+++.|+.++.++.|++||+.+++....+..+...+.... +++++ .++.
T Consensus 77 --------~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~ 148 (388)
T 3pe7_A 77 --------EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRRED 148 (388)
T ss_dssp --------CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGG
T ss_pred --------eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcc
Confidence 12444455678999999999999999999999999987776666665554333 47888 4432
Q ss_pred ---------------eeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCC------CcEEEe
Q 047728 279 ---------------GSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSD------GLVNFW 336 (474)
Q Consensus 279 ---------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d------g~i~v~ 336 (474)
...+..|.+||+..+. ...+..+...+..++|+| +++.|+....+ ..|.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~ 221 (388)
T 3pe7_A 149 WVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLI 221 (388)
T ss_dssp CCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEE
T ss_pred cccccccchhhhhhccCCcceEEEEECCCCc-------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEE
Confidence 2244678999987543 223334556789999999 99988877653 378888
Q ss_pred ecCcccccceeeeec---ceeeEEEEecCCEEEEEeC-CC----cEEEEECCCCceEEEEeecCCccc---eEEEEEeeC
Q 047728 337 ERELNLSHGGVLRGH---KLAILCLVTAGNLVFSGSA-DM----SICIWRRKENEHICLSMLTGHSGP---VKCLAVEKD 405 (474)
Q Consensus 337 d~~~~~~~~~~~~~~---~~~v~~~~~~~~~l~sgs~-dg----~i~iwd~~~~~~~~~~~~~~h~~~---v~~l~~~~~ 405 (474)
|....... .+.... ......++|+|+.|+..+. ++ .|++||+.+++...+..+.++... ...++|+||
T Consensus 222 d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd 300 (388)
T 3pe7_A 222 NEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD 300 (388)
T ss_dssp ETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE
T ss_pred eCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC
Confidence 87654322 222222 1223568889987755443 22 399999998876555555442111 122379999
Q ss_pred CccccccceEEEEEe---------cCCCcEEEEEccCCCCCCCCCcccccccCCCCCCC-------ccccCCCCCcCCce
Q 047728 406 DESLSREKRWILYSG---------SLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPN-------SLPYAPSFSSQGRI 469 (474)
Q Consensus 406 ~~~~~~~~~~~l~s~---------s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~-------~l~~~p~~s~Dg~~ 469 (474)
++ .|+.. ..+..|++|++.++.. ..+..+..... ....+|+|||||+.
T Consensus 301 g~--------~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~ 364 (388)
T 3pe7_A 301 GS--------DAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--------HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQ 364 (388)
T ss_dssp EC--------CC------------CCCCEEEEEETTTTEE--------EEEEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred CC--------cceeEeeeccccccCCCCEEEEEeccCCce--------EEeccccCcccccccccccCCCCccCCCCCCE
Confidence 88 44432 5567899999987632 22333332111 02456789999998
Q ss_pred eecc
Q 047728 470 CQKR 473 (474)
Q Consensus 470 l~~~ 473 (474)
|+..
T Consensus 365 l~~~ 368 (388)
T 3pe7_A 365 ILFT 368 (388)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7753
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=2.2e-16 Score=150.95 Aligned_cols=282 Identities=9% Similarity=0.025 Sum_probs=180.3
Q ss_pred eeeeeeeecCcEEE-------EEEcCCEEEEeeC-CCc--EEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCC
Q 047728 102 LIGSLVREEGHIYS-------LAAAGDLLYTGSD-SKN--IRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQD 167 (474)
Q Consensus 102 ~~~~l~~h~~~i~~-------~~~~~~~l~tgs~-dg~--v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~d 167 (474)
.+..|..|.+.... ++|+|++|+.++. +|. |.+||.. +.......+...+..+.|+ ++.|+.++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 34455566655544 6777998888887 674 7777744 3333344455555455676 7789999999
Q ss_pred CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEE--EecCCCCEEEEE-------
Q 047728 168 GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL--SMSEDQNLLYSA------- 238 (474)
Q Consensus 168 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l--~~~~~~~~l~s~------- 238 (474)
+.|++||+.+++...... .+...+... .+++++.+++..
T Consensus 102 ~~l~~~d~~~g~~~~~~~--------------------------------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~ 149 (388)
T 3pe7_A 102 RNLMRVDLATLEENVVYQ--------------------------------VPAEWVGYGTWVANSDCTKLVGIEIRREDW 149 (388)
T ss_dssp TEEEEEETTTCCEEEEEE--------------------------------CCTTEEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred CeEEEEECCCCcceeeee--------------------------------chhhcccccceeECCCCCeeccccccCccc
Confidence 999999999876532211 122223222 347888887643
Q ss_pred ---------------ECCCcEEEEEcCCcceeeeeeecCcceeEEEecC-CC-eEEEeeCC------CcEEEEEcccCCC
Q 047728 239 ---------------SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF-DG-LVFTGSAD------GTVKVWRRELQGK 295 (474)
Q Consensus 239 ---------------s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~-~~-~l~~~~~d------g~i~iwd~~~~~~ 295 (474)
..+..|.+||+.+++.. .+..+...+..+.|+| ++ .|+....+ ..|.++|+.....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM 228 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce
Confidence 23477999999988654 4445677889999999 88 56655543 3677777653321
Q ss_pred ceeeeeeeeeeccc--ccEEEEEEcCCCCEEEEEcC-CC----cEEEeecCcccccce-eeeecc-----eeeEEEEecC
Q 047728 296 GTKHFFSQTLLKQE--CAVTALAISPDAAIVYCGSS-DG----LVNFWERELNLSHGG-VLRGHK-----LAILCLVTAG 362 (474)
Q Consensus 296 ~~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~~~~~-dg----~i~v~d~~~~~~~~~-~~~~~~-----~~v~~~~~~~ 362 (474)
..+..+. ..+..++|+|+|+.|+..+. ++ .|++||+.++..... ...++. ..-..++++|
T Consensus 229 -------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg 301 (388)
T 3pe7_A 229 -------RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDG 301 (388)
T ss_dssp -------EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE
T ss_pred -------EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCC
Confidence 1222222 35778899999997755433 22 399999987753211 111110 1113689999
Q ss_pred CEEEEE---------eCCCcEEEEECCCCceEEEEeecCCcc-----------ceEEEEEeeCCccccccceEEEEEecC
Q 047728 363 NLVFSG---------SADMSICIWRRKENEHICLSMLTGHSG-----------PVKCLAVEKDDESLSREKRWILYSGSL 422 (474)
Q Consensus 363 ~~l~sg---------s~dg~i~iwd~~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~~~~~~~~~l~s~s~ 422 (474)
+.|+.. ..+..|++||+.+++. ..+..+.. .+.+++|+||++. +++++..
T Consensus 302 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~-------l~~~s~~ 371 (388)
T 3pe7_A 302 SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ---HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQ-------ILFTSDV 371 (388)
T ss_dssp CCC------------CCCCEEEEEETTTTEE---EEEEECCCCCCCBTTBSSTTCCCCEECTTSSE-------EEEEECT
T ss_pred CcceeEeeeccccccCCCCEEEEEeccCCce---EEeccccCcccccccccccCCCCccCCCCCCE-------EEEEecC
Confidence 877754 4567899999998763 34444544 5788999999983 4445556
Q ss_pred CCcEEEEEccC
Q 047728 423 DKSVKMWRVSE 433 (474)
Q Consensus 423 Dg~i~vw~~~~ 433 (474)
+|...||.+.-
T Consensus 372 ~g~~~l~~~~l 382 (388)
T 3pe7_A 372 HGKPALYLATL 382 (388)
T ss_dssp TSSCEEEEEEC
T ss_pred CCceeEEEEEC
Confidence 88888887754
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=1e-15 Score=145.17 Aligned_cols=234 Identities=10% Similarity=0.140 Sum_probs=150.7
Q ss_pred CCeeEEEecCCCCEEEEEECCCcEEEEEcC-Ccceeeeeeec-CcceeEEEecCCCe---EEEee-------------CC
Q 047728 221 DAISSLSMSEDQNLLYSASWDKTFKVWRTS-DYKCLESVIAH-DDAVNSIVAGFDGL---VFTGS-------------AD 282 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~v~~~~~~~---l~~~~-------------~d 282 (474)
..+..++|+|++++|++++.+ .|.+||+. +++........ .+.+.+++++|++. ++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 467889999999999999988 99999997 77665433211 13466789999993 33443 68
Q ss_pred CcEEEEEcccCCCceeeeeeeee-ecccccEEEEEEcCCCCEEEEEcC-CCcEEEeecC-ccccc-ceeee----eccee
Q 047728 283 GTVKVWRRELQGKGTKHFFSQTL-LKQECAVTALAISPDAAIVYCGSS-DGLVNFWERE-LNLSH-GGVLR----GHKLA 354 (474)
Q Consensus 283 g~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~-~~~~~-~~~~~----~~~~~ 354 (474)
+.+.+|++........ ..... ..+...+.+++|+|+|++|+++.. ++.|.+||+. ++... ..... +....
T Consensus 119 g~v~v~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 119 GYGNVFSVSETGKLEK--NVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp CEEEEEEECTTCCEEE--EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred ceEEEEccCCCCcCcc--eEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 9999999974332111 11111 124567999999999998887654 6799999997 55322 11121 22234
Q ss_pred eEEEEecCCEEEEEeC-CCcEEEEECC--CCceEE----EEeec----CCcc------ceEEEE-EeeCCccccccceEE
Q 047728 355 ILCLVTAGNLVFSGSA-DMSICIWRRK--ENEHIC----LSMLT----GHSG------PVKCLA-VEKDDESLSREKRWI 416 (474)
Q Consensus 355 v~~~~~~~~~l~sgs~-dg~i~iwd~~--~~~~~~----~~~~~----~h~~------~v~~l~-~~~~~~~~~~~~~~~ 416 (474)
-++++++|+++++++. ++.|.+|++. +++... +..+. +|.. .+..++ |+||++ +
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~--------~ 268 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK--------Y 268 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS--------E
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC--------E
Confidence 4678899999988775 6899999875 444221 12222 2222 588999 999998 6
Q ss_pred EEEecCC-C-----cEEEEEccC-CCCCCCCCcccccccCCCCCCCccccCCCCCc---CCceeecc
Q 047728 417 LYSGSLD-K-----SVKMWRVSE-QAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSS---QGRICQKR 473 (474)
Q Consensus 417 l~s~s~D-g-----~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~---Dg~~l~~~ 473 (474)
|+++..+ . .|.+|++.. +... .....+..+...+..+ +|+| ||++|...
T Consensus 269 l~v~~~~~~~~~~~~i~v~~~~~~g~~~----~~~~~~~~~~~~~~~~----a~sp~~~dg~~l~v~ 327 (365)
T 1jof_A 269 MFASSRANKFELQGYIAGFKLRDCGSIE----KQLFLSPTPTSGGHSN----AVSPCPWSDEWMAIT 327 (365)
T ss_dssp EEEEEEESSTTSCCEEEEEEECTTSCEE----EEEEEEECSSCCTTCC----CEEECTTCTTEEEEE
T ss_pred EEEECCCCCCCCCCeEEEEEECCCCCEE----EeeeeeecCCCCcccc----eecCCCcCCCEEEEE
Confidence 6665432 2 899999963 3210 0000122234445566 6677 89887653
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.73 E-value=2.6e-16 Score=163.38 Aligned_cols=304 Identities=10% Similarity=0.077 Sum_probs=181.0
Q ss_pred EEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccC-----EEEEEec--CCEEEEEeCC---------CeEEEEecCC
Q 047728 116 LAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGL-----VKAIVIS--NEKIFSGHQD---------GKIRVWKVSS 177 (474)
Q Consensus 116 ~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~-----V~~i~~~--~~~l~s~~~d---------g~i~vwd~~~ 177 (474)
+.++|++|+++ ||+|++||.. +....+..|... ...+.|+ +++|+.++.+ +.+.+||+.+
T Consensus 24 w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~ 101 (740)
T 4a5s_A 24 WISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK 101 (740)
T ss_dssp ECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred ECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCC
Confidence 34457788886 8999999954 444445555432 2335666 7788888876 5667999998
Q ss_pred CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee
Q 047728 178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES 257 (474)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 257 (474)
++... +..|...+...+|+|||+.|+.+. |+.|++||+.+++....
T Consensus 102 ~~~~~---------------------------------l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 102 RQLIT---------------------------------EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp TEECC---------------------------------SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred CcEEE---------------------------------cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEE
Confidence 76431 122667899999999999999885 68999999988775432
Q ss_pred e-eecCcc-----------------eeEEEecCCC-eEEEeeCCC-----------------------------------
Q 047728 258 V-IAHDDA-----------------VNSIVAGFDG-LVFTGSADG----------------------------------- 283 (474)
Q Consensus 258 ~-~~~~~~-----------------v~~v~~~~~~-~l~~~~~dg----------------------------------- 283 (474)
. .++... ...+.|+||| .|+.++.|.
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~ 227 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPT 227 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCE
T ss_pred cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCe
Confidence 1 122221 2358999999 676664332
Q ss_pred -cEEEEEccc---CCCceeeeeee--eeecccccEEEEEEcCCCCEEEEEcC----CCcEEEeecCccc----c--ccee
Q 047728 284 -TVKVWRREL---QGKGTKHFFSQ--TLLKQECAVTALAISPDAAIVYCGSS----DGLVNFWERELNL----S--HGGV 347 (474)
Q Consensus 284 -~i~iwd~~~---~~~~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~~----dg~i~v~d~~~~~----~--~~~~ 347 (474)
.|++||+.. +.......+.. ....+...+..++|+||++.++.... +..|.+||+.++. + ....
T Consensus 228 ~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l 307 (740)
T 4a5s_A 228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH 307 (740)
T ss_dssp EEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE
T ss_pred eEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEe
Confidence 366677664 32101100000 01136777999999999996665432 3469999998775 1 1111
Q ss_pred -eeecce-------eeEEEEecCCEEE-EEeC-C--CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceE
Q 047728 348 -LRGHKL-------AILCLVTAGNLVF-SGSA-D--MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRW 415 (474)
Q Consensus 348 -~~~~~~-------~v~~~~~~~~~l~-sgs~-d--g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 415 (474)
...+.. ....+++||+.|+ ..+. + ..|++||..+++. ..+......|..+.. ++++.
T Consensus 308 ~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~---~~lT~g~~~v~~~~~-~d~~~------- 376 (740)
T 4a5s_A 308 IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC---TFITKGTWEVIGIEA-LTSDY------- 376 (740)
T ss_dssp EEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC---EESCCSSSCEEEEEE-ECSSE-------
T ss_pred eeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce---EecccCCEEEEEEEE-EeCCE-------
Confidence 123332 2356889999877 6653 3 4688889887763 244444555666543 44442
Q ss_pred EEEEecC----CCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728 416 ILYSGSL----DKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ 471 (474)
Q Consensus 416 ~l~s~s~----Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~ 471 (474)
+++++.. .+...||.+...... ....+...-....+-.+.++|||||+.++
T Consensus 377 i~f~~~~~~~~~~~~~ly~v~~~g~~-----~~~~lt~~~~~~~~~~~~~~~S~dg~~~~ 431 (740)
T 4a5s_A 377 LYYISNEYKGMPGGRNLYKIQLIDYT-----KVTCLSCELNPERCQYYSVSFSKEAKYYQ 431 (740)
T ss_dssp EEEEESCGGGCTTCBEEEEEETTEEE-----EEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred EEEEEecCCCCCceeEEEEEECCCCC-----cceeeccccCCCCCceEEEEECCCCCEEE
Confidence 5555554 345667766532110 00011100000112334568899998765
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=1.8e-15 Score=155.23 Aligned_cols=286 Identities=9% Similarity=0.038 Sum_probs=181.6
Q ss_pred eeeeeecCcEEEEEEcCCEEE--Ee--eCCCcEEEEeC--CccccccccCccCEE---------EEEec----CCE-EEE
Q 047728 104 GSLVREEGHIYSLAAAGDLLY--TG--SDSKNIRVWKN--QREFSGFKSNSGLVK---------AIVIS----NEK-IFS 163 (474)
Q Consensus 104 ~~l~~h~~~i~~~~~~~~~l~--tg--s~dg~v~vwd~--~~~~~~~~~h~~~V~---------~i~~~----~~~-l~s 163 (474)
..+.+|...+..++++++.++ .. +.++...||.. ......+..|...+. ...|+ ++. |+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 346678889999999977443 34 44788999972 333445555555544 44333 667 665
Q ss_pred EeC-CCeEEEEecC--C-CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE
Q 047728 164 GHQ-DGKIRVWKVS--S-KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS 239 (474)
Q Consensus 164 ~~~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 239 (474)
++. +..|.+|++. . ++... +...+ ...|...+.+++|+|||+.|+.++
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~---l~~~~-------------------------~~~~~~~~~~~~~spDg~~l~~~~ 148 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRP---LTPVS-------------------------AVGGGLRWADPVLLPERGEVWCMA 148 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEE---CSCCC-------------------------CSTTCEEEEEEEEETTTTEEEEEE
T ss_pred EECCCCeEEEEcCCCCCCCCCEe---ccCCc-------------------------cCCCCccccCcEECCCCCEEEEEE
Confidence 543 5556666665 2 32211 00000 000455688999999999999988
Q ss_pred CC----------CcEEEEEcCC------cceeeeee-ecCcceeEEEecCCC-eEEEeeCC--------CcEEEEEcccC
Q 047728 240 WD----------KTFKVWRTSD------YKCLESVI-AHDDAVNSIVAGFDG-LVFTGSAD--------GTVKVWRRELQ 293 (474)
Q Consensus 240 ~d----------g~i~iwd~~~------~~~~~~~~-~~~~~v~~v~~~~~~-~l~~~~~d--------g~i~iwd~~~~ 293 (474)
.+ ..|++||+.+ ++. ..+. .+...+..++|+||| .|+.++.+ ..|.+||+...
T Consensus 149 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 149 EEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp EEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred ecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 77 5899999987 554 4444 556778889999999 67766654 37999998732
Q ss_pred CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC--cEEEeecCcccccceeeeecc----------eeeEEEEec
Q 047728 294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG--LVNFWERELNLSHGGVLRGHK----------LAILCLVTA 361 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~----------~~v~~~~~~ 361 (474)
+. ..........+...+..++|+||+++++++..++ .|.+||+.++... .+...+. ...++++++
T Consensus 228 g~--~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~~~~~~~~~~~ 304 (662)
T 3azo_A 228 GR--FADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTPGMRWFAPLAN 304 (662)
T ss_dssp SC--EEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCSTTCCSEEECTT
T ss_pred Cc--ccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccccCceEeEeCC
Confidence 21 0012223334567899999999999888888888 5666676544322 2222221 123566678
Q ss_pred CCEEEEEeCCCcEEEE--ECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 362 GNLVFSGSADMSICIW--RRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 362 ~~~l~sgs~dg~i~iw--d~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
+.+++++.. +.++|| |..+++ +..+..|...+..+. ++++... ++++++.+....||.+.
T Consensus 305 ~~~~~~~~~-~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~-s~~~~~~------~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 305 GLIAVVHGK-GAAVLGILDPESGE---LVDAAGPWTEWAATL-TVSGTRA------VGVAASPRTAYEVVELD 366 (662)
T ss_dssp SCEEEEEBS-SSCEEEEEETTTTE---EEECCSSCCEEEEEE-EEETTEE------EEEEEETTEEEEEEEEE
T ss_pred CEEEEEEEc-CccEEEEEECCCCc---EEEecCCCCeEEEEE-ecCCCEE------EEEEcCCCCCCEEEEEE
Confidence 999999998 999999 555554 456777777787771 3444321 56666666655555443
No 167
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=170.77 Aligned_cols=223 Identities=11% Similarity=0.024 Sum_probs=153.9
Q ss_pred EEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCc---ceeEEEecCCC-eEEEeeC---------CCcEEEEEcc
Q 047728 225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDD---AVNSIVAGFDG-LVFTGSA---------DGTVKVWRRE 291 (474)
Q Consensus 225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~v~~~~~~-~l~~~~~---------dg~i~iwd~~ 291 (474)
+++|+|++++++ .+.|+.|++||+.+++....+..+.. .+.+++|+||| .|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 779999995544 55799999999999988777665544 48999999999 7777765 7899999987
Q ss_pred cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecce------------------
Q 047728 292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL------------------ 353 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~------------------ 353 (474)
.+.... ...+ ...+..++|+|||+.|+.+. ++.|++||+.++........++..
T Consensus 99 ~g~~~~----~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~ 170 (719)
T 1z68_A 99 NGEFVR----GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT 170 (719)
T ss_dssp TTEECC----SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred CCcccc----ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence 543200 0111 24588899999999999885 789999999876543222122211
Q ss_pred -eeEEEEecCCEEEEEeCCC----------------------------------cEEEEECCCCceE---EE---EeecC
Q 047728 354 -AILCLVTAGNLVFSGSADM----------------------------------SICIWRRKENEHI---CL---SMLTG 392 (474)
Q Consensus 354 -~v~~~~~~~~~l~sgs~dg----------------------------------~i~iwd~~~~~~~---~~---~~~~~ 392 (474)
...+++|||++|++++.|. .|++||+.+++.. .+ ..+.+
T Consensus 171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 250 (719)
T 1z68_A 171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS 250 (719)
T ss_dssp SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence 3588999999999988652 7889999887631 11 12346
Q ss_pred CccceEEEEEeeCCccccccceEEEEEecCC----CcEEEEE----ccCCCCCCCCCcccccc----cCCCCCCCc-ccc
Q 047728 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLD----KSVKMWR----VSEQAPPLVSTTQQHPL----EGHGVAPNS-LPY 459 (474)
Q Consensus 393 h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D----g~i~vw~----~~~~~~~~~~~~~~~~~----~~~~~~v~~-l~~ 459 (474)
|...+..++|+||++ ++++.... ..|.+|| +.+++. ...+ .+|...+.. ...
T Consensus 251 ~~~~~~~~~~SpD~~--------~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~ 315 (719)
T 1z68_A 251 SDYYFSWLTWVTDER--------VCLQWLKRVQNVSVLSICDFREDWQTWDC-------PKTQEHIEESRTGWAGGFFVS 315 (719)
T ss_dssp SCEEEEEEEESSSSE--------EEEEEEESSTTEEEEEEEEECSSSSSEEC-------CGGGEEEEECSSSCSSSSSCC
T ss_pred CcceEEEeEEeCCCe--------EEEEEeccccCeEEEEEEcccCCCCCCce-------EEEEecccccCCceEccccCC
Confidence 888999999999987 67764322 2488888 655422 1222 245544441 112
Q ss_pred CCCCCcCCceee
Q 047728 460 APSFSSQGRICQ 471 (474)
Q Consensus 460 ~p~~s~Dg~~l~ 471 (474)
.|+|||||+.++
T Consensus 316 ~~~~spdg~~l~ 327 (719)
T 1z68_A 316 TPVFSYDAISYY 327 (719)
T ss_dssp CCEECTTSSCEE
T ss_pred ccEECCCCCeEE
Confidence 568999999553
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=1.5e-14 Score=132.12 Aligned_cols=241 Identities=9% Similarity=0.122 Sum_probs=161.1
Q ss_pred cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728 146 SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI 223 (474)
Q Consensus 146 ~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 223 (474)
++-....+++++ +..+++...++.|.+|+.+. +........ ..-.++...+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~--------------------------~~~~~~~~~p 79 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGEC--------------------------GKRDSQLLYP 79 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCB--------------------------SSSTTCBSSE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEeccc--------------------------CCCcccccCc
Confidence 455668888887 55666667888999998763 222111000 0001245678
Q ss_pred eEEEec-CCCCEEEEEEC-CCcEEEEEcCCcceeeeeee-cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceee
Q 047728 224 SSLSMS-EDQNLLYSASW-DKTFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKH 299 (474)
Q Consensus 224 ~~l~~~-~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~ 299 (474)
.++++. +++.++++... ++.|.+|| .+++.+..+.. +...+.++++.+++ ++++...++.|.+||... .
T Consensus 80 ~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~---- 152 (286)
T 1q7f_A 80 NRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG--N---- 152 (286)
T ss_dssp EEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS--C----
T ss_pred eEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC--C----
Confidence 899994 66665555533 88999999 56777666643 34568899999999 556666788999998642 1
Q ss_pred eeeeee--ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceee-ee--cceeeEEEEecCCEEEEEeCCC-c
Q 047728 300 FFSQTL--LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVL-RG--HKLAILCLVTAGNLVFSGSADM-S 373 (474)
Q Consensus 300 ~~~~~~--~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~--~~~~v~~~~~~~~~l~sgs~dg-~ 373 (474)
..... ..+...+..++++++++++++...++.|++||..... ...+. .+ ....-++++++|+++++...++ .
T Consensus 153 -~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~ 230 (286)
T 1q7f_A 153 -VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY-LRQIGGEGITNYPIGVGINSNGEILIADNHNNFN 230 (286)
T ss_dssp -EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE-EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE
T ss_pred -EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCE-EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE
Confidence 11111 1344568999999999988888889999999975432 21111 11 1233466777898888888776 9
Q ss_pred EEEEECCCCceEEEEeecCC--ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 374 ICIWRRKENEHICLSMLTGH--SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 374 i~iwd~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
|.+||..... +..+..+ ...+.+++++|++. ++++ +.|++|++|++...
T Consensus 231 i~~~~~~g~~---~~~~~~~~~~~~~~~i~~~~~g~--------l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 231 LTIFTQDGQL---ISALESKVKHAQCFDVALMDDGS--------VVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEECTTSCE---EEEEEESSCCSCEEEEEEETTTE--------EEEE-ETTTEEEEEECSCC
T ss_pred EEEECCCCCE---EEEEcccCCCCcceeEEECCCCc--------EEEE-CCCCeEEEEEcccc
Confidence 9999965432 3333333 33478999999997 6776 56999999998664
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.71 E-value=2.3e-16 Score=163.79 Aligned_cols=231 Identities=10% Similarity=-0.004 Sum_probs=157.7
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcc-----eeEEEecCCC-eEEEeeCC---------CcEE
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDA-----VNSIVAGFDG-LVFTGSAD---------GTVK 286 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~v~~~~~~-~l~~~~~d---------g~i~ 286 (474)
...++.|+|++++|+++ |++|++||+.++++...+..|... ...+.|+||+ .|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 46689999999888886 999999999999988777776543 2347889999 77777765 5677
Q ss_pred EEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecce-------------
Q 047728 287 VWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKL------------- 353 (474)
Q Consensus 287 iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~------------- 353 (474)
+||+..+. ...+..+...+...+|+|||+.|+.+ .++.|++||+.++....-...++..
T Consensus 96 ~~d~~~~~-------~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 96 IYDLNKRQ-------LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEETTTTE-------ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEECCCCc-------EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 99998643 22344566789999999999999887 5689999999876543222222221
Q ss_pred ------eeEEEEecCCEEEEEeCCC------------------------------------cEEEEECCC---CceEEEE
Q 047728 354 ------AILCLVTAGNLVFSGSADM------------------------------------SICIWRRKE---NEHICLS 388 (474)
Q Consensus 354 ------~v~~~~~~~~~l~sgs~dg------------------------------------~i~iwd~~~---~~~~~~~ 388 (474)
....++|||++|+.++.|. .|++||+.+ ++.....
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence 1267999999999875332 488899988 6210122
Q ss_pred eec------CCccceEEEEEeeCCccccccceEEEEEe----cCCCcEEEEEccCCCCCCCCCcccccc--cCCCCCCCc
Q 047728 389 MLT------GHSGPVKCLAVEKDDESLSREKRWILYSG----SLDKSVKMWRVSEQAPPLVSTTQQHPL--EGHGVAPNS 456 (474)
Q Consensus 389 ~~~------~h~~~v~~l~~~~~~~~~~~~~~~~l~s~----s~Dg~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~v~~ 456 (474)
.+. +|...+..++|+||++ +++.. +.+..|++||+.+++..... .....+ .+|...+..
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg~--------~~~~~~~r~~~~~~i~~~d~~tg~~~~~~-~~~~~l~~~~~~~~v~~ 318 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQER--------ISLQWLRRIQNYSVMDICDYDESSGRWNC-LVARQHIEMSTTGWVGR 318 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTE--------EEEEEEESSTTEEEEEEEEEETTTTEEEE-CGGGCEEEECSSSCSSS
T ss_pred EecCCccCCCCCeEEEEEEEeCCCe--------EEEEEeCCCCCEEEEEEEECCCCccccce-eEEEEeeeccCCceEcc
Confidence 232 3788899999999998 45543 23447999999887410000 011112 334444431
Q ss_pred -cccCCCCCcCCceee
Q 047728 457 -LPYAPSFSSQGRICQ 471 (474)
Q Consensus 457 -l~~~p~~s~Dg~~l~ 471 (474)
....|+|||||+.++
T Consensus 319 ~~~~~p~fspDG~~l~ 334 (740)
T 4a5s_A 319 FRPSEPHFTLDGNSFY 334 (740)
T ss_dssp SSCCCCEECTTSSEEE
T ss_pred CcCCCceEcCCCCEEE
Confidence 123678999999765
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=3.1e-14 Score=132.79 Aligned_cols=262 Identities=10% Similarity=0.095 Sum_probs=175.7
Q ss_pred cCcEEEEEEc--CCEEEEeeCCCcEEEEeCCccccccccCc-cCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeee
Q 047728 110 EGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGFKSNS-GLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRV 186 (474)
Q Consensus 110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~~~h~-~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 186 (474)
-+.+.+++++ |+++++...++.+.+++.... ..+..+. .++ .++.|.+||..+++......
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~i~~~d~~~g~~~~~~~- 86 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSK-FVYQQRGLGPI--------------EEDTILVIDPNNAEILQSSG- 86 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTT-SCBSCGGGCSC--------------CSCCEEEECTTTCCEEEEEC-
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcc-eeecccccccc--------------cCCcEEEEECCCCeEEeccC-
Confidence 4788888877 778888888876666543322 1122221 111 47889999988776432110
Q ss_pred cccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc-eeeeee------
Q 047728 187 GTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK-CLESVI------ 259 (474)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~------ 259 (474)
.++......++++++++++++...++.|++||..... .+..+.
T Consensus 87 ------------------------------~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g 136 (329)
T 3fvz_A 87 ------------------------------KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG 136 (329)
T ss_dssp ------------------------------TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC
T ss_pred ------------------------------CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC
Confidence 0144578899999999988888889999999975442 444442
Q ss_pred ---ecCcceeEEEecC-CC-eEEEee-CCCcEEEEEcccCCCceeeeeeeeee----------cccccEEEEEEcCC-CC
Q 047728 260 ---AHDDAVNSIVAGF-DG-LVFTGS-ADGTVKVWRRELQGKGTKHFFSQTLL----------KQECAVTALAISPD-AA 322 (474)
Q Consensus 260 ---~~~~~v~~v~~~~-~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~----------~~~~~v~~l~~~~~-~~ 322 (474)
.+-.....++++| ++ ++++.+ .++.|++||.. +.. ...+. .+-.....++++|+ +.
T Consensus 137 ~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~------~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~ 209 (329)
T 3fvz_A 137 SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKF------VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQ 209 (329)
T ss_dssp CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCE------EEEECEECCSSSCCTTEESCEEEEEEETTTTE
T ss_pred CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCE------EEEeccCCCCCCCCCcccCCCcEEEEECCCCE
Confidence 2334688999999 67 555554 58999999943 211 11111 12234899999998 77
Q ss_pred EEEEEcCCCcEEEeecCcccccceeee-ecc--eeeEEEEe------cCCEEEEEeCCCcEEEEECCCCceEEEEee---
Q 047728 323 IVYCGSSDGLVNFWERELNLSHGGVLR-GHK--LAILCLVT------AGNLVFSGSADMSICIWRRKENEHICLSML--- 390 (474)
Q Consensus 323 ~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~--~~v~~~~~------~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--- 390 (474)
++++...++.|++||..++.....+.. .+. ...+++.| +++..++...+..|++||..+++. +..+
T Consensus 210 l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--~~~~~~~ 287 (329)
T 3fvz_A 210 LCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI--IDVFKPV 287 (329)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCE--EEEECCS
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeE--EEEEcCC
Confidence 777778889999999985544332211 122 22234444 444444445566999999988873 4444
Q ss_pred cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 391 TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 391 ~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
.++...+.+|+++|++. ++++...+++|++|++...
T Consensus 288 ~~~~~~p~~ia~~~dG~--------lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 288 RKHFDMPHDIVASEDGT--------VYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp SSCCSSEEEEEECTTSE--------EEEEESSSCCEEEEEEEEC
T ss_pred CCccCCeeEEEECCCCC--------EEEEECCCCEEEEEeCCcc
Confidence 36677899999999997 8999999999999998754
No 171
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.67 E-value=9.6e-16 Score=146.74 Aligned_cols=220 Identities=8% Similarity=-0.065 Sum_probs=139.8
Q ss_pred EEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeE-------------------EEecCCC-eEEEe-----
Q 047728 225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNS-------------------IVAGFDG-LVFTG----- 279 (474)
Q Consensus 225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------------------v~~~~~~-~l~~~----- 279 (474)
.+.|+|+++.|+.++.++.|++||+.+++.......+...... +.++|++ .++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 4789999999999999999999999988766555444332222 2456666 33322
Q ss_pred eCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCC------CcEEEeecCcccccceeeeec-
Q 047728 280 SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSD------GLVNFWERELNLSHGGVLRGH- 351 (474)
Q Consensus 280 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~- 351 (474)
..+..|.+||+..+.. ..+..+...+..+.|+| ++..|+..+.+ ..|.+||+...... .+....
T Consensus 165 ~~~~~l~~~d~~~g~~-------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~ 236 (396)
T 3c5m_A 165 NPTCRLIKVDIETGEL-------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAE 236 (396)
T ss_dssp CCCEEEEEEETTTCCE-------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCT
T ss_pred CCcceEEEEECCCCcE-------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCC
Confidence 4566789999875432 12224566789999999 78877665543 36888888654322 222211
Q ss_pred --ceeeEEEEecCCEEEEEeCC-----CcEEEEECCCCceEEEEeecCCccceEEEEEee-CCccccccceEEEEEec--
Q 047728 352 --KLAILCLVTAGNLVFSGSAD-----MSICIWRRKENEHICLSMLTGHSGPVKCLAVEK-DDESLSREKRWILYSGS-- 421 (474)
Q Consensus 352 --~~~v~~~~~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~~~~~~~~l~s~s-- 421 (474)
......++++|++|+.++.+ +.|++||+.+++...+....+ .. +.|+| +++ +++.++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~--------~l~~~~~~ 303 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGS--------LMVGDGCD 303 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSS--------EEEEEECC
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCc--------eEEEecCC
Confidence 22336788899987776544 449999998887544433332 23 88999 988 666644
Q ss_pred --------------CCCcEEEEEccCCCCCCCCCcccccccCCCCCC-------CccccCCCCCcCCceeecc
Q 047728 422 --------------LDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAP-------NSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 422 --------------~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v-------~~l~~~p~~s~Dg~~l~~~ 473 (474)
.+..|++||+.++... .+..+...+ ......|+|+|||+.|+..
T Consensus 304 ~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 368 (396)
T 3c5m_A 304 APVDVADADSYNIENDPFLYVLNTKAKSAQ--------KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFT 368 (396)
T ss_dssp C----------CCCCCCEEEEEETTTTBCC--------EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred cceeeccccccccCCCCcEEEEecccCceE--------EccCCCCccccccccccCCCCCceEccCCCeEEEE
Confidence 3478999999776321 222222211 1123456899999877643
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=1.5e-14 Score=135.04 Aligned_cols=240 Identities=13% Similarity=0.053 Sum_probs=158.8
Q ss_pred ccCCeeEEEecCCCCEEEEEECC------------------------CcEEEEEcCCcceeeeee-ecCcceeEEEecCC
Q 047728 219 HFDAISSLSMSEDQNLLYSASWD------------------------KTFKVWRTSDYKCLESVI-AHDDAVNSIVAGFD 273 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~v~~~~~ 273 (474)
....+.+++++++++++++...+ ++|.+||..+++.+..+. .+-..+..+++.++
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 34679999999999998888777 479999998888876654 23457889999999
Q ss_pred C-eEEEeeCCCcEEEEEcccCCCceeeeeeee-----eecccccEEEEEEcC-CCCEEEEEc-CCCcEEEeecCcccccc
Q 047728 274 G-LVFTGSADGTVKVWRRELQGKGTKHFFSQT-----LLKQECAVTALAISP-DAAIVYCGS-SDGLVNFWERELNLSHG 345 (474)
Q Consensus 274 ~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~v~~l~~~~-~~~~l~~~~-~dg~i~v~d~~~~~~~~ 345 (474)
+ ++++...++.|++||........ ..+... ...+......++++| ++.++++.+ .++.|++||.... ...
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~-~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~-~~~ 179 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPL-LILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK-FVT 179 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCS-EEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC-EEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEE-EEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC-EEE
Confidence 9 67777778999999975331110 000000 023344689999999 788888876 6899999995433 222
Q ss_pred eeee-e----------cceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccc
Q 047728 346 GVLR-G----------HKLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREK 413 (474)
Q Consensus 346 ~~~~-~----------~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 413 (474)
.... + ....-+++.++ +.++++...++.|++||..+++.........+...+.+++|+| +.....++
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g 258 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG 258 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence 2211 1 11334677777 6777777788999999998777443333345677889999999 33000000
Q ss_pred eEEEEEecCCCcEEEEEccCCCCCCCCCcccccc---cCCCCCCCccccCCCCCcCCceeecc
Q 047728 414 RWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPL---EGHGVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 414 ~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
+ .+++...+..|++|++.+++. ...+ .++...+.++ +++|||.++++.
T Consensus 259 ~-~~v~~~~~~~v~~~~~~~g~~-------~~~~~~~~~~~~~p~~i----a~~~dG~lyvad 309 (329)
T 3fvz_A 259 K-PYFGDQEPVQGFVMNFSSGEI-------IDVFKPVRKHFDMPHDI----VASEDGTVYIGD 309 (329)
T ss_dssp C-CCTTCSCCCCEEEEETTTCCE-------EEEECCSSSCCSSEEEE----EECTTSEEEEEE
T ss_pred C-EEeccCCCcEEEEEEcCCCeE-------EEEEcCCCCccCCeeEE----EECCCCCEEEEE
Confidence 0 222333455899999987732 2222 3444456666 678899888764
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.65 E-value=2.6e-13 Score=123.82 Aligned_cols=230 Identities=12% Similarity=0.162 Sum_probs=156.7
Q ss_pred cCcEEEEEEc--CCEEEEeeCCCcEEEEeCCc-cccccc------cCccCEEEEEe-c-CCEEEEEeC--CCeEEEEecC
Q 047728 110 EGHIYSLAAA--GDLLYTGSDSKNIRVWKNQR-EFSGFK------SNSGLVKAIVI-S-NEKIFSGHQ--DGKIRVWKVS 176 (474)
Q Consensus 110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~-~~~~~~------~h~~~V~~i~~-~-~~~l~s~~~--dg~i~vwd~~ 176 (474)
-..+.+++++ ++++++...++.|.+||... .+..+. .+...+..+++ . ++.|+.+.. ++.|++|+.
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~- 107 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ- 107 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-
Confidence 3456777765 77888888899999998553 222222 34467889999 3 455665553 889999994
Q ss_pred CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee
Q 047728 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE 256 (474)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 256 (474)
.++..... . ..+...+.++++.++++++++...++.|.+||. +++.+.
T Consensus 108 ~g~~~~~~--~-----------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~ 155 (286)
T 1q7f_A 108 YGQFVRKF--G-----------------------------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLH 155 (286)
T ss_dssp TSCEEEEE--C-----------------------------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEE
T ss_pred CCcEEEEe--c-----------------------------CccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEE
Confidence 33322111 0 013456789999999988887777899999995 456555
Q ss_pred eee--ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeee--cccccEEEEEEcCCCCEEEEEcCCC
Q 047728 257 SVI--AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLL--KQECAVTALAISPDAAIVYCGSSDG 331 (474)
Q Consensus 257 ~~~--~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~dg 331 (474)
.+. .+...+..+++++++ ++++...++.|++||.... ....+. ++...+..++++++++++++...++
T Consensus 156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~ 228 (286)
T 1q7f_A 156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-------YLRQIGGEGITNYPIGVGINSNGEILIADNHNN 228 (286)
T ss_dssp EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCC
Confidence 554 334568999999999 5566667899999997421 112222 2235789999999999888887776
Q ss_pred -cEEEeecCcccccceeeeecc----eeeEEEEecCCEEEEEeCCCcEEEEECCCC
Q 047728 332 -LVNFWERELNLSHGGVLRGHK----LAILCLVTAGNLVFSGSADMSICIWRRKEN 382 (474)
Q Consensus 332 -~i~v~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~ 382 (474)
.|.+||.... ... .+..+. ...+++.++|+++++ +.|+.|++|+....
T Consensus 229 ~~i~~~~~~g~-~~~-~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 229 FNLTIFTQDGQ-LIS-ALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CEEEEECTTSC-EEE-EEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEEEECCCCC-EEE-EEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 9999996543 222 222221 224667788887776 67999999998654
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.65 E-value=6.5e-15 Score=140.92 Aligned_cols=283 Identities=10% Similarity=-0.004 Sum_probs=167.6
Q ss_pred EEEEcCCEEEEeeCC-C--cEEEEeCCc-cccccccCccC-EEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728 115 SLAAAGDLLYTGSDS-K--NIRVWKNQR-EFSGFKSNSGL-VKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVG 187 (474)
Q Consensus 115 ~~~~~~~~l~tgs~d-g--~v~vwd~~~-~~~~~~~h~~~-V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 187 (474)
+++++|++|+..... + .|.+||... ....+..+... ...+.|+ +++|+.++.++.|.+|++.+++........
T Consensus 42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~ 121 (396)
T 3c5m_A 42 CFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD 121 (396)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred cCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc
Confidence 355678887766543 3 577778542 22333333333 2225566 778999999999999999887643322211
Q ss_pred ccC-ccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE-----ECCCcEEEEEcCCcceeeeeeec
Q 047728 188 TLP-TFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA-----SWDKTFKVWRTSDYKCLESVIAH 261 (474)
Q Consensus 188 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~~ 261 (474)
... .....+.... ...... . ....+.|+|+++.++.+ ..+..|.+||+.+++..... .+
T Consensus 122 ~~~~~~g~~l~~~~-~~~~~~-------~------~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~ 186 (396)
T 3c5m_A 122 EEWKGYGTWVANSD-CTKLVG-------I------EILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QD 186 (396)
T ss_dssp TTEEEEEEEEECTT-SSEEEE-------E------EEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EE
T ss_pred cccCCCCCEEEecc-CCcccc-------c------cccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cC
Confidence 000 0000000000 000000 0 00124578888877654 35678999999988765444 56
Q ss_pred CcceeEEEecC-CC-eEEEeeCC------CcEEEEEcccCCCceeeeeeeeeecc--cccEEEEEEcCCCCEEEEEcCC-
Q 047728 262 DDAVNSIVAGF-DG-LVFTGSAD------GTVKVWRRELQGKGTKHFFSQTLLKQ--ECAVTALAISPDAAIVYCGSSD- 330 (474)
Q Consensus 262 ~~~v~~v~~~~-~~-~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~~~~d- 330 (474)
...+..+.|+| ++ .|+..+.+ ..|.+||+..... ..+..+ ...+..++|+|+++.|+.++.+
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-------RKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-------EESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-------eEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 77889999999 66 55555443 3577787753321 111112 3358889999999987766543
Q ss_pred ----CcEEEeecCcccccceeeeecceeeEEEEe-cCCEEEEEe----------------CCCcEEEEECCCCceEEEEe
Q 047728 331 ----GLVNFWERELNLSHGGVLRGHKLAILCLVT-AGNLVFSGS----------------ADMSICIWRRKENEHICLSM 389 (474)
Q Consensus 331 ----g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sgs----------------~dg~i~iwd~~~~~~~~~~~ 389 (474)
+.|++||+.++.... +....... ..+++ ++++++.++ .+..|++||+.+++.. .
T Consensus 260 ~~~~~~l~~~d~~~g~~~~-l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~ 334 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEE-VMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ---K 334 (396)
T ss_dssp TTCCEEEEEECTTTCCEEE-EEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC---E
T ss_pred CCccceEEEEECCCCCeEE-eeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE---E
Confidence 449999998764321 11111122 77888 999888765 3478999999887643 3
Q ss_pred ecCCcc-----------ceEEEEEeeCCccccccceEEEEEe-cCCCcEEEEEcc
Q 047728 390 LTGHSG-----------PVKCLAVEKDDESLSREKRWILYSG-SLDKSVKMWRVS 432 (474)
Q Consensus 390 ~~~h~~-----------~v~~l~~~~~~~~~~~~~~~~l~s~-s~Dg~i~vw~~~ 432 (474)
+..+.. .+..++|+|+++ .|+.+ ..++...||.+.
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~s~dg~--------~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 335 LCKHSTSWDVLDGDRQITHPHPSFTPNDD--------GVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp EEECCCCCCCBTTBSSTTCCCCEECTTSS--------EEEEEECTTSSCEEEEEE
T ss_pred ccCCCCccccccccccCCCCCceEccCCC--------eEEEEecCCCCceEEEEE
Confidence 333433 256788999998 45444 456777777665
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.65 E-value=9.5e-14 Score=129.68 Aligned_cols=252 Identities=8% Similarity=0.094 Sum_probs=162.2
Q ss_pred EEEEEEc--CCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecc
Q 047728 113 IYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGT 188 (474)
Q Consensus 113 i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 188 (474)
|.+++++ +..++..+.++.++.| ..+....+..+...+.+++|+ ++.++++..++.|.+||.++++.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~---- 82 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTI-TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF---- 82 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEE-ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE----
T ss_pred cceeeecCCccceeEEeecccCccc-ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe----
Confidence 3444444 3345555667888888 444555566677778899997 455667788899999998876542111
Q ss_pred cCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC----CcEEEEEcCCcceeeeee--ecC
Q 047728 189 LPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD----KTFKVWRTSDYKCLESVI--AHD 262 (474)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~--~~~ 262 (474)
..+...+.+++++++++++++...+ +.|.+||..+++....+. .+.
T Consensus 83 ----------------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 134 (333)
T 2dg1_A 83 ----------------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA 134 (333)
T ss_dssp ----------------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred ----------------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence 1145679999999999888777666 689999988776543332 234
Q ss_pred cceeEEEecCCCeEEEeeCC-------CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE-EcCCCcEE
Q 047728 263 DAVNSIVAGFDGLVFTGSAD-------GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC-GSSDGLVN 334 (474)
Q Consensus 263 ~~v~~v~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~ 334 (474)
..+.++++.+++.++.+... +.|..+|..... . ..+......+..++|+|+++.|++ ...++.|.
T Consensus 135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~-----~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~ 207 (333)
T 2dg1_A 135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--V-----TPIIQNISVANGIALSTDEKVLWVTETTANRLH 207 (333)
T ss_dssp CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--E-----EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE--E-----EEeecCCCcccceEECCCCCEEEEEeCCCCeEE
Confidence 57899999999954444442 345445443211 1 111122345788999999986654 45678999
Q ss_pred EeecCcc-cccce----ee---eec-ceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCcc------ceEE
Q 047728 335 FWERELN-LSHGG----VL---RGH-KLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG------PVKC 399 (474)
Q Consensus 335 v~d~~~~-~~~~~----~~---~~~-~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~------~v~~ 399 (474)
+||+... ..... .. .++ ...-+++.++|+++++...++.|.+||.. ++. +..+..+.. .+.+
T Consensus 208 ~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~--~~~~~~~~~~~g~~~~~~~ 284 (333)
T 2dg1_A 208 RIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYP--IGQILIPGRDEGHMLRSTH 284 (333)
T ss_dssp EEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCE--EEEEECTTGGGTCSCBCCE
T ss_pred EEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCE--EEEEEcCCCccccccCcce
Confidence 9998642 21111 01 111 12235666778888888788999999985 442 333333322 6899
Q ss_pred EEEeeCCc
Q 047728 400 LAVEKDDE 407 (474)
Q Consensus 400 l~~~~~~~ 407 (474)
++|+|++.
T Consensus 285 ~~~~~dg~ 292 (333)
T 2dg1_A 285 PQFIPGTN 292 (333)
T ss_dssp EEECTTSC
T ss_pred EEECCCCC
Confidence 99999876
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.63 E-value=2.3e-13 Score=127.77 Aligned_cols=250 Identities=14% Similarity=0.114 Sum_probs=161.0
Q ss_pred EEEEEcCCEEEEee---------CCCcEEEEeCCcc-ccccccCccCEEEEEec--CCEEEEEeCC---Ce--EEEEecC
Q 047728 114 YSLAAAGDLLYTGS---------DSKNIRVWKNQRE-FSGFKSNSGLVKAIVIS--NEKIFSGHQD---GK--IRVWKVS 176 (474)
Q Consensus 114 ~~~~~~~~~l~tgs---------~dg~v~vwd~~~~-~~~~~~h~~~V~~i~~~--~~~l~s~~~d---g~--i~vwd~~ 176 (474)
...+++|+.|+... .++.|.+|+.... ...+ ..+..+.|+ +++|+..+.+ +. |.+|++.
T Consensus 18 ~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~ 93 (347)
T 2gop_A 18 SDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLE 93 (347)
T ss_dssp EEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETT
T ss_pred ccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECC
Confidence 33334887766542 2567888985532 2223 567788888 6678877654 33 6777776
Q ss_pred CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC---------------
Q 047728 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD--------------- 241 (474)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d--------------- 241 (474)
+++.... ..+.. +..++|+|+++.|+.++.+
T Consensus 94 ~g~~~~l---------------------------------~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~ 139 (347)
T 2gop_A 94 TLSSKKI---------------------------------LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPA 139 (347)
T ss_dssp TTEEEEE---------------------------------EEESE-EEEEEECTTSSEEEEEEECCCC---------CCC
T ss_pred CCceEEE---------------------------------EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccce
Confidence 6543211 11223 8899999999998887642
Q ss_pred ------------CcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCC-------cEEEEEcccCCCceeeeee
Q 047728 242 ------------KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADG-------TVKVWRRELQGKGTKHFFS 302 (474)
Q Consensus 242 ------------g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~ 302 (474)
..|.+||+.+++.+..+.. . .+..+.|+|++.++++..++ ...||.+. ... .
T Consensus 140 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~~--~---- 210 (347)
T 2gop_A 140 WFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DGK--E---- 210 (347)
T ss_dssp C---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TTE--E----
T ss_pred eecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC-CCc--e----
Confidence 5799999998887455555 4 88899999999545554432 45666655 221 1
Q ss_pred eeeecccccEEEEEEcCCCCEEEEEcCC--------CcEEEeecCcccccceeeeecceee---EEEEecCCEEEEEeCC
Q 047728 303 QTLLKQECAVTALAISPDAAIVYCGSSD--------GLVNFWERELNLSHGGVLRGHKLAI---LCLVTAGNLVFSGSAD 371 (474)
Q Consensus 303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~d--------g~i~v~d~~~~~~~~~~~~~~~~~v---~~~~~~~~~l~sgs~d 371 (474)
..+..+ ..+..+ +|+|+.|+.++.+ ..|.+|| ++. ...+...+...+ ..++ ++ ++++++.+
T Consensus 211 ~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~ 282 (347)
T 2gop_A 211 EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKD-GK-VYFTLFEE 282 (347)
T ss_dssp EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc-eEeccccCCcccCCccEEc-Cc-EEEEEecC
Confidence 111222 344444 8999988877644 3688888 332 222333333333 4455 66 88999999
Q ss_pred CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcE-EEEEcc
Q 047728 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSV-KMWRVS 432 (474)
Q Consensus 372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i-~vw~~~ 432 (474)
+.++|| +.+++. ..+..+...|.+++|+| . ++++++.++.. .||.+.
T Consensus 283 ~~~~l~-~~~g~~---~~~~~~~~~v~~~~~s~--~--------~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 283 GSVNLY-IWDGEI---KPIAKGRHWIMGFDVDE--I--------VVYLKETATRLRELFTWD 330 (347)
T ss_dssp TEEEEE-EESSSE---EEEECSSSEEEEEEESS--S--------EEEEEECSSSCCEEEEES
T ss_pred CcEEEE-EcCCce---EEEecCCCeEEeeeeeC--c--------EEEEEcCCCChHHheEeC
Confidence 999999 875542 23344577899999998 4 67777777765 888886
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.62 E-value=4.2e-14 Score=145.11 Aligned_cols=265 Identities=11% Similarity=0.058 Sum_probs=165.8
Q ss_pred EcCCE-EEEeeC-CCcEEEEeCC----cccccccc-----CccCEEEEEec--CCEEEEEeCC----------CeEEEEe
Q 047728 118 AAGDL-LYTGSD-SKNIRVWKNQ----REFSGFKS-----NSGLVKAIVIS--NEKIFSGHQD----------GKIRVWK 174 (474)
Q Consensus 118 ~~~~~-l~tgs~-dg~v~vwd~~----~~~~~~~~-----h~~~V~~i~~~--~~~l~s~~~d----------g~i~vwd 174 (474)
|+|++ |+..+. +..|.+|+.. .....+.. |...+..++|+ ++.|+.++.| ..|++|+
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~ 167 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP 167 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence 78887 665554 6677777765 55555655 67788899998 6788888876 5899999
Q ss_pred cCC------CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee-eccCCeeEEEecCCCCEEEEEECCC-----
Q 047728 175 VSS------KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI-KHFDAISSLSMSEDQNLLYSASWDK----- 242 (474)
Q Consensus 175 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~dg----- 242 (474)
+.+ ++... +. .+...+..++|+|||++|+.++.++
T Consensus 168 ~~~~~~~~~~~~~~---------------------------------l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~ 214 (662)
T 3azo_A 168 LDGSAAADRSAVRE---------------------------------LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPW 214 (662)
T ss_dssp TTSTTTTCGGGSEE---------------------------------SSCSCSSEECCCEECTTSSEEEEEEECTTCCTT
T ss_pred CCCCccccCCceeE---------------------------------EEecCCCcccCceECCCCCEEEEEECCCCCCCC
Confidence 987 33211 11 2445677889999999999887553
Q ss_pred ---cEEEEEcC-Cc---ceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc---
Q 047728 243 ---TFKVWRTS-DY---KCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA--- 311 (474)
Q Consensus 243 ---~i~iwd~~-~~---~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--- 311 (474)
.|++||+. ++ +.......+...+..+.|+||| +++++..++..+||.+....... ......+...
T Consensus 215 ~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~----~~l~~~~~~~~~p 290 (662)
T 3azo_A 215 EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA----TQLCRREEEFAGP 290 (662)
T ss_dssp TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE----EESSCCSSBSSCC
T ss_pred CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce----eecccccccccCc
Confidence 79999998 56 4444444557889999999999 77777888854554443211111 1111111111
Q ss_pred -----EEEEEEcCCCCEEEEEcCCCcEEEe--ecCcccccceeeeecceeeEEE-EecCCEEE--EEeCCC--cEEEEEC
Q 047728 312 -----VTALAISPDAAIVYCGSSDGLVNFW--ERELNLSHGGVLRGHKLAILCL-VTAGNLVF--SGSADM--SICIWRR 379 (474)
Q Consensus 312 -----v~~l~~~~~~~~l~~~~~dg~i~v~--d~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~--sgs~dg--~i~iwd~ 379 (474)
+..++|+|++.+++++.. +.+++| |+..+. ...+..+...+..+ +++++.++ +++.+. .|.+||+
T Consensus 291 ~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~ 367 (662)
T 3azo_A 291 LWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE--LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDT 367 (662)
T ss_dssp CCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE--EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred cccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc--EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence 567899999999999998 999999 544443 23444555566666 77766443 334444 4556677
Q ss_pred CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
.+++... ....+...+....+.+... +.+....+..|..|-+.
T Consensus 368 ~~g~~~~--l~~~~~~~~~~~~~~~~~~--------~~~~~~dg~~i~~~~~~ 410 (662)
T 3azo_A 368 VTGRART--IGARHTDPVDPAYYPEPQI--------RTFTAPDGREIHAHIYP 410 (662)
T ss_dssp TTCCEEE--EESCCCCSSCGGGSCCCEE--------EEEECTTSCEEEEEEEC
T ss_pred CCCceEE--eecCCcccCCccccCcceE--------EEEEcCCCCEEEEEEEC
Confidence 6776322 2233333333222332222 44454444467666553
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.62 E-value=4.3e-13 Score=133.24 Aligned_cols=275 Identities=10% Similarity=0.050 Sum_probs=185.5
Q ss_pred EEEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEeCCCeEEEEecC--CCCcceeeee
Q 047728 113 IYSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVS--SKDASIHKRV 186 (474)
Q Consensus 113 i~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~ 186 (474)
++...+.+.++++...++.|.++|.. +.+..+.. ...+..+.++ ++++++++.|+.|.+||+. +.+......
T Consensus 160 ~~~~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~- 237 (567)
T 1qks_A 160 MNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK- 237 (567)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE-
T ss_pred ccccCCCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe-
Confidence 33334445677788889999999954 34444443 3356678887 7799999999999999996 443322111
Q ss_pred cccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEec----CCCCEEEEEEC-CCcEEEEEcCCcceeeeeeec
Q 047728 187 GTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMS----EDQNLLYSASW-DKTFKVWRTSDYKCLESVIAH 261 (474)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~----~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~ 261 (474)
.......++|+ |+|++++++.. +++|.++|..+.+.+..+...
T Consensus 238 --------------------------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~ 285 (567)
T 1qks_A 238 --------------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR 285 (567)
T ss_dssp --------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred --------------------------------cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecc
Confidence 11234689999 69998887764 599999999999988876532
Q ss_pred ----------Cc-ceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc
Q 047728 262 ----------DD-AVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS 328 (474)
Q Consensus 262 ----------~~-~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 328 (474)
.. .+..+..++++ .++....+|.|.++|...... +.............+.|+|++++++++.
T Consensus 286 ~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-----~~v~~i~~~~~~~d~~~~pdgr~~~va~ 360 (567)
T 1qks_A 286 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-----LKTTEISAERFLHDGGLDGSHRYFITAA 360 (567)
T ss_dssp EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----EEEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred ccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-----ceeeeeeccccccCceECCCCCEEEEEe
Confidence 12 56788888876 566667789999999864332 1122223445677899999999887655
Q ss_pred -CCCcEEEeecCcccccceeee----ecceeeEE-EEecCCEE-EEEe-CCCcEEEEECCCCc-----eEEEEeecCCcc
Q 047728 329 -SDGLVNFWERELNLSHGGVLR----GHKLAILC-LVTAGNLV-FSGS-ADMSICIWRRKENE-----HICLSMLTGHSG 395 (474)
Q Consensus 329 -~dg~i~v~d~~~~~~~~~~~~----~~~~~v~~-~~~~~~~l-~sgs-~dg~i~iwd~~~~~-----~~~~~~~~~h~~ 395 (474)
.++.|.++|..+++....+.. .|...... +.+++..+ +++. .++.|.++|....+ ...+..+.....
T Consensus 361 ~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~ 440 (567)
T 1qks_A 361 NARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG 440 (567)
T ss_dssp GGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS
T ss_pred CCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC
Confidence 578899999998765443333 34322223 46664444 4443 46899999998722 223455554433
Q ss_pred ceEEEEEeeCCccccccceEEEEEecC-------CCcEEEEEccCC
Q 047728 396 PVKCLAVEKDDESLSREKRWILYSGSL-------DKSVKMWRVSEQ 434 (474)
Q Consensus 396 ~v~~l~~~~~~~~~~~~~~~~l~s~s~-------Dg~i~vw~~~~~ 434 (474)
.-..+..+|+++ +|+.... ..+|.|+|+.+.
T Consensus 441 g~~~i~~~p~~~--------~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 441 GSLFIKTHPNSQ--------YLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CCCCEECCTTCS--------EEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCEEEEeCCCCC--------eEEEecCCCCCcccCceEEEEECCcc
Confidence 334577899988 5666442 459999999876
No 179
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.61 E-value=2.1e-13 Score=127.00 Aligned_cols=256 Identities=9% Similarity=0.053 Sum_probs=171.5
Q ss_pred eCCCcEEEEeCCc--ccccc-c-----cCccCEEEEEecCCEEEEE-eCCCeEEEEecCCCCcceeeeecccCccceeee
Q 047728 127 SDSKNIRVWKNQR--EFSGF-K-----SNSGLVKAIVISNEKIFSG-HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIK 197 (474)
Q Consensus 127 s~dg~v~vwd~~~--~~~~~-~-----~h~~~V~~i~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 197 (474)
+.++.|.+||... ....+ . ........+.+.++.++.+ ..++.|.+||..+++......
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~------------ 81 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT------------ 81 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE------------
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC------------
Confidence 3478999999552 22211 1 1234567788886655544 457899999999876543221
Q ss_pred eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecC-----cceeEEEec
Q 047728 198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHD-----DAVNSIVAG 271 (474)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~v~~~ 271 (474)
.......+++++++ .++++. .++.|.+||..+++....+.... .....+++
T Consensus 82 ---------------------~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~- 138 (328)
T 3dsm_A 82 ---------------------GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ- 138 (328)
T ss_dssp ---------------------CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-
T ss_pred ---------------------CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-
Confidence 23457789998888 455555 89999999999998887776433 14567777
Q ss_pred CCCeEEEee--CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC----------CcEEEeecC
Q 047728 272 FDGLVFTGS--ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD----------GLVNFWERE 339 (474)
Q Consensus 272 ~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----------g~i~v~d~~ 339 (474)
.++.++++. .++.|.+||+.+... ..... .......++++|++++++++..+ +.|.++|..
T Consensus 139 ~~~~lyv~~~~~~~~v~viD~~t~~~------~~~i~-~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 139 YGKYVYVNCWSYQNRILKIDTETDKV------VDELT-IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp ETTEEEEEECTTCCEEEEEETTTTEE------EEEEE-CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred ECCEEEEEcCCCCCEEEEEECCCCeE------EEEEE-cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 455555554 488999999875432 11111 12345678999999977776554 789999998
Q ss_pred cccccceeee--ecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEE
Q 047728 340 LNLSHGGVLR--GHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWIL 417 (474)
Q Consensus 340 ~~~~~~~~~~--~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l 417 (474)
+......+.. +....-+++++++++|+++.. .|.+||..+++......+........+++++|++.. ++
T Consensus 212 t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~-------ly 282 (328)
T 3dsm_A 212 TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGE-------VY 282 (328)
T ss_dssp TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCC-------EE
T ss_pred CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCe-------EE
Confidence 7754433322 223455788888999888765 899999987763211112222456889999995442 66
Q ss_pred EEe----cCCCcEEEEEccCC
Q 047728 418 YSG----SLDKSVKMWRVSEQ 434 (474)
Q Consensus 418 ~s~----s~Dg~i~vw~~~~~ 434 (474)
++. ..++.|.+|+.. +
T Consensus 283 va~~~~y~~~~~V~v~d~~-g 302 (328)
T 3dsm_A 283 VADAIDYQQQGIVYRYSPQ-G 302 (328)
T ss_dssp EEECTTSSSEEEEEEECTT-C
T ss_pred EEcccccccCCEEEEECCC-C
Confidence 666 678999999987 5
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=4.7e-13 Score=138.29 Aligned_cols=231 Identities=10% Similarity=-0.007 Sum_probs=151.1
Q ss_pred ccCCeeEEEecCCCCEEEEEECCC-----cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCc--------
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDK-----TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGT-------- 284 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~-------- 284 (474)
|...+..++|+|||++|+.+..++ .|++||+.+++.+.....+ ..+..++|+||+ .|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 444688999999999998776543 8999999999876643322 236789999999 7777777665
Q ss_pred --------EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-----CCcEEEeecCc------ccccc
Q 047728 285 --------VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-----DGLVNFWEREL------NLSHG 345 (474)
Q Consensus 285 --------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-----dg~i~v~d~~~------~~~~~ 345 (474)
|++|++....... ........+...+..+.|+|++++|+..+. +..|++||+.+ +....
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~--~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSED--ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGC--EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccCCCCEEEEEECCCCcccc--eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 9999986543211 111122234556889999999999887764 56899999976 42222
Q ss_pred eeeeecc-eeeEEEEecCCEEEEEeCC----CcEEEEECCCCceEEEEeecCCcc--ceEEEEEeeCCccccccceEEEE
Q 047728 346 GVLRGHK-LAILCLVTAGNLVFSGSAD----MSICIWRRKENEHICLSMLTGHSG--PVKCLAVEKDDESLSREKRWILY 418 (474)
Q Consensus 346 ~~~~~~~-~~v~~~~~~~~~l~sgs~d----g~i~iwd~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~l~ 418 (474)
..+..+. .....++++|+.|+..+.+ +.|.+||+.++.......+..|.. .+..++|++++. +++
T Consensus 280 ~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------lv~ 351 (710)
T 2xdw_A 280 VKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF--------LVL 351 (710)
T ss_dssp EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE--------EEE
T ss_pred EEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE--------EEE
Confidence 3333333 2334578888887776653 369999998764201123334433 688899987766 888
Q ss_pred EecCCCcEEE--EEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728 419 SGSLDKSVKM--WRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ 471 (474)
Q Consensus 419 s~s~Dg~i~v--w~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~ 471 (474)
+...|+..+| |++.++. ..+.+..+...+..+ +++||++.+.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~-------~~~~l~~~~~~v~~~----~~s~d~~~l~ 395 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGA-------LLKIFPLEVGSVVGY----SGQKKDTEIF 395 (710)
T ss_dssp EEEETTEEEEEEEETTTCC-------EEEEECCCSSEEEEE----ECCTTCSEEE
T ss_pred EEEECCEEEEEEEECCCCC-------EEEecCCCCceEEEE----ecCCCCCEEE
Confidence 8888986555 5554442 223344444455555 5566775443
No 181
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.60 E-value=3.4e-13 Score=127.29 Aligned_cols=270 Identities=11% Similarity=0.041 Sum_probs=171.4
Q ss_pred eeeeeeeeecCcEEEEEEcCCEEEEeeC----------CCcEEEEeCC--cccccccc------CccCEEEEEec--CCE
Q 047728 101 VLIGSLVREEGHIYSLAAAGDLLYTGSD----------SKNIRVWKNQ--REFSGFKS------NSGLVKAIVIS--NEK 160 (474)
Q Consensus 101 ~~~~~l~~h~~~i~~~~~~~~~l~tgs~----------dg~v~vwd~~--~~~~~~~~------h~~~V~~i~~~--~~~ 160 (474)
+++.++..+..+=..++++|++|+++.. ++.|.+||.. +.+..+.. +......++++ +++
T Consensus 42 ~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~ 121 (361)
T 2oiz_A 42 KFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF 121 (361)
T ss_dssp CEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE
T ss_pred eEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE
Confidence 3455565555552345556889988863 6779999965 33333322 12334567776 778
Q ss_pred EEEEeC--CCeEEEEecCCCCccee-eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC-CEEE
Q 047728 161 IFSGHQ--DGKIRVWKVSSKDASIH-KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ-NLLY 236 (474)
Q Consensus 161 l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~ 236 (474)
|+++.. ++.|.+||+.+++.... .. + .....+.+.|++ ..++
T Consensus 122 l~v~n~~~~~~v~v~d~~~~~~~~~~i~---------------------------------~-~~~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 122 IVLQNASPATSIGIVDVAKGDYVEDVTA---------------------------------A-AGCWSVIPQPNRPRSFM 167 (361)
T ss_dssp EEEEEESSSEEEEEEETTTTEEEEEEGG---------------------------------G-TTEEEEEECTTSSSEEE
T ss_pred EEEECCCCCCeEEEEECCCCcEEEEEec---------------------------------C-CCcceeEEcCCCCeeEE
Confidence 888764 68999999998754321 11 1 112234566754 6778
Q ss_pred EEECCCcEEEEEcCC-cceeee------eeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeee--e
Q 047728 237 SASWDKTFKVWRTSD-YKCLES------VIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL--L 306 (474)
Q Consensus 237 s~s~dg~i~iwd~~~-~~~~~~------~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~ 306 (474)
+.+.||.+.+|+... ++.... +.....++ .+.+.+++ .++..+.++.|.++|+............... .
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~ 246 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDED 246 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHH
T ss_pred EECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccc
Confidence 888999999999865 554422 11222222 22334555 5666678899999998643321100000000 0
Q ss_pred cc----cccEEEEEEcCCCCEEEEEcC-----------CCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCC
Q 047728 307 KQ----ECAVTALAISPDAAIVYCGSS-----------DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSAD 371 (474)
Q Consensus 307 ~~----~~~v~~l~~~~~~~~l~~~~~-----------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d 371 (474)
.. ......++|+|+++.++++.. .+.|.+||+.+.+.+..+..+. ...+.++++|++|++++.
T Consensus 247 ~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 247 KAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp HHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-
T ss_pred cccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-
Confidence 00 111123789999888887643 3479999999887766555555 667889999999998887
Q ss_pred CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
+.|.+||..+++...+..+..+......++++|++.
T Consensus 325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999999983225667666777789999999975
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.60 E-value=2e-13 Score=128.13 Aligned_cols=183 Identities=11% Similarity=0.080 Sum_probs=123.5
Q ss_pred CeeEEEecCCCCEEEEEECC---C--cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCC-------------
Q 047728 222 AISSLSMSEDQNLLYSASWD---K--TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSAD------------- 282 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~d---g--~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~d------------- 282 (474)
.+..++|+|||+.|+.++.+ + .|.+||+.+++....... .. +..+.|+|++ .|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 57789999999999887754 2 488889888776554443 34 8999999999 66666532
Q ss_pred --------------CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-------cEEEeecCcc
Q 047728 283 --------------GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-------LVNFWERELN 341 (474)
Q Consensus 283 --------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-------~i~v~d~~~~ 341 (474)
..|.+||+..+.. ...+.. . .+..++|+|++ +++++..+. ...+|.++++
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~------~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~ 208 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEV------IEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG 208 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEE------EEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT
T ss_pred ceeecCcccccCccceEEEEECCCCeE------EeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC
Confidence 5688888864321 011112 2 67889999999 777775542 3445444433
Q ss_pred cccceeeeecceeeEEEEecCCEEEEEeCC--------CcEEEEECCCCceEEEEeecCCccceEE-EEEeeCCcccccc
Q 047728 342 LSHGGVLRGHKLAILCLVTAGNLVFSGSAD--------MSICIWRRKENEHICLSMLTGHSGPVKC-LAVEKDDESLSRE 412 (474)
Q Consensus 342 ~~~~~~~~~~~~~v~~~~~~~~~l~sgs~d--------g~i~iwd~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~ 412 (474)
. ...+ ..+ ..+..++++|++|+.++.+ ..|.+|| +++ .......|...+.. +.|+ ++
T Consensus 209 ~-~~~l-~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~--~~~l~~~~~~~~~~~~~~s-dg------ 274 (347)
T 2gop_A 209 K-EEKM-FEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE--VMGILDEVDRGVGQAKIKD-GK------ 274 (347)
T ss_dssp E-EEEE-EEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC--EEESSTTCCSEEEEEEEET-TE------
T ss_pred c-eEEe-ccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCc--eEeccccCCcccCCccEEc-Cc------
Confidence 2 2222 233 5556669999988877754 3688888 444 23344566778886 8898 54
Q ss_pred ceEEEEEecCCCcEEEEEccC
Q 047728 413 KRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 413 ~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
++++++.++.++|| +.+
T Consensus 275 ---~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 275 ---VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp ---EEEEEEETTEEEEE-EES
T ss_pred ---EEEEEecCCcEEEE-EcC
Confidence 58888899999999 874
No 183
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.59 E-value=4.1e-13 Score=121.50 Aligned_cols=210 Identities=10% Similarity=0.022 Sum_probs=147.8
Q ss_pred CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeecc-CCeeEEEecCCCCEEE
Q 047728 158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHF-DAISSLSMSEDQNLLY 236 (474)
Q Consensus 158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~ 236 (474)
++.|++++.|+.|.+||.++++....... +. ..+.++.+.|+|++|+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~--------------------------------~~~~~~~~~~~~pdG~ilv 52 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPL--------------------------------EKGWECNSVAATKAGEILF 52 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEEC--------------------------------CTTCCCCEEEECTTSCEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCC--------------------------------CccCCCcCeEECCCCCEEE
Confidence 56788999999999999988876544332 22 3578899999999888
Q ss_pred EEECCCcEEEEEcCCcceeeeeeecC-cceeEEEecCCC-eEEEeeC-CCcEEEEEcccCCCceeeeeee-eeecccccE
Q 047728 237 SASWDKTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDG-LVFTGSA-DGTVKVWRRELQGKGTKHFFSQ-TLLKQECAV 312 (474)
Q Consensus 237 s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~-~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v 312 (474)
+.++.|..||. +++.+..+..+. ..+.++.+.+++ .+++.+. ++.|..+|.. .+........ ....+....
T Consensus 53 --s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~~~~~~~~~~ 127 (276)
T 3no2_A 53 --SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFETGIERPHAQF 127 (276)
T ss_dssp --ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECCSCSSGGGSC
T ss_pred --eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccCCCCcccccc
Confidence 45788999998 899999888753 478888999999 6666565 6667666642 2211111111 111222345
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecC
Q 047728 313 TALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTG 392 (474)
Q Consensus 313 ~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~ 392 (474)
..+++.++++++++...++.|.+||.+ ++.+.............+.+++++++++..++.|..+|..+++. +..+..
T Consensus 128 ~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~--~w~~~~ 204 (276)
T 3no2_A 128 RQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI--VRRVNA 204 (276)
T ss_dssp SCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE--EEEEEG
T ss_pred cCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE--EEEecC
Confidence 566789999999999999999999998 65554433322233345567899999999889999999998874 444433
Q ss_pred Cc------cceEEEEEeeCCc
Q 047728 393 HS------GPVKCLAVEKDDE 407 (474)
Q Consensus 393 h~------~~v~~l~~~~~~~ 407 (474)
+. ..+..++..+++.
T Consensus 205 ~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 205 NDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp GGSBSCCCSEEEEEEECTTSC
T ss_pred CCCCCccccccccceEcCCCC
Confidence 21 2378888888887
No 184
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=2.7e-11 Score=110.83 Aligned_cols=275 Identities=11% Similarity=0.051 Sum_probs=176.8
Q ss_pred eecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCccccccc--cCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcc
Q 047728 108 REEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGFK--SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDAS 181 (474)
Q Consensus 108 ~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~~--~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~ 181 (474)
.+...+.+++.+ |+++++...++.|.+||....+..+. .+...+.+++++ +..+++...++.|..|+.+ ++.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~- 89 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII- 89 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-
Confidence 344568888876 66666666678899998664443332 245678899997 4455555557889999875 221
Q ss_pred eeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee-eee
Q 047728 182 IHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES-VIA 260 (474)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~ 260 (474)
..... ......+.++++.+++.++++...++.|.+||. +++.... ...
T Consensus 90 ~~~~~------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~ 138 (299)
T 2z2n_A 90 KEYTL------------------------------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPN 138 (299)
T ss_dssp EEEEC------------------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred EEEeC------------------------------CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCC
Confidence 11100 013446889999999988877777889999998 5544322 222
Q ss_pred cCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728 261 HDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339 (474)
Q Consensus 261 ~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~ 339 (474)
....+..+++.+++ .+++...++.|..||. .+.. . ..........+..+++++++.++++...++.|.+||.
T Consensus 139 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~- 211 (299)
T 2z2n_A 139 KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI-T----EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT- 211 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-E----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-
T ss_pred CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE-E----EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-
Confidence 34568899999998 4444555788999987 3221 1 1112233456889999999998777777889999998
Q ss_pred cccccceeeeecceee--EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEE
Q 047728 340 LNLSHGGVLRGHKLAI--LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWIL 417 (474)
Q Consensus 340 ~~~~~~~~~~~~~~~v--~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l 417 (474)
++.........+...+ +++.++|++.++...++.|..||.. ++.. ...+..+...+.++++ +++. ++
T Consensus 212 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~-~~~~~~~~~~~~~i~~-~~g~--------l~ 280 (299)
T 2z2n_A 212 SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NIIE-EYPIQIKSAEPHGICF-DGET--------IW 280 (299)
T ss_dssp TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEEE-EEECSSSSCCEEEEEE-CSSC--------EE
T ss_pred CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-CceE-EEeCCCCCCccceEEe-cCCC--------EE
Confidence 4432211112222333 4455677766666578999999983 4422 2234455677999999 8887 55
Q ss_pred EEecCCCcEEEEEccCC
Q 047728 418 YSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 418 ~s~s~Dg~i~vw~~~~~ 434 (474)
++.. .+.|..++..+.
T Consensus 281 v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 281 FAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEET-TTEEEEEEEC--
T ss_pred EEec-CCcEEEEEcCcc
Confidence 5554 566777776554
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.59 E-value=7.6e-13 Score=121.37 Aligned_cols=234 Identities=12% Similarity=0.127 Sum_probs=156.1
Q ss_pred ccccccCccCEEEEEec--CC-EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceee
Q 047728 141 FSGFKSNSGLVKAIVIS--NE-KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI 217 (474)
Q Consensus 141 ~~~~~~h~~~V~~i~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (474)
+..+..+.....+++|+ ++ .++++..++.|..|+..++ .. .+.
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~---------------------------------~~~ 65 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS---------------------------------PEM 65 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE---------------------------------EEE
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE---------------------------------EEE
Confidence 34444556677888997 55 6788888999999998876 21 111
Q ss_pred eccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeec----CcceeEEEecCCC-eEEE----eeC-------
Q 047728 218 KHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH----DDAVNSIVAGFDG-LVFT----GSA------- 281 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~v~~v~~~~~~-~l~~----~~~------- 281 (474)
.+...+.+++++++++++++...++.|.+||..+++........ ...+..+++.++| ++++ |+.
T Consensus 66 ~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~ 145 (296)
T 3e5z_A 66 HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG 145 (296)
T ss_dssp SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC
T ss_pred CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccc
Confidence 25567889999999998777766789999999887754433221 2356789999999 4444 331
Q ss_pred ------CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC-cccc-c-ceeeeecc
Q 047728 282 ------DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE-LNLS-H-GGVLRGHK 352 (474)
Q Consensus 282 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~-~~~~-~-~~~~~~~~ 352 (474)
.+.|..++.. .. ......+......++|+|+++.+++.+.++.|.+|++. .+.. . ...+..+.
T Consensus 146 ~~~~~~~~~l~~~~~~--g~------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 217 (296)
T 3e5z_A 146 GEMELPGRWVFRLAPD--GT------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEP 217 (296)
T ss_dssp CCCCSSSCEEEEECTT--SC------EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSS
T ss_pred ccccCCCcEEEEECCC--CC------EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCC
Confidence 2344444433 22 12233455667899999999998777888999999986 2221 0 11221111
Q ss_pred --eeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEe-eCCccccccceEEEEEecCCCcEEEE
Q 047728 353 --LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE-KDDESLSREKRWILYSGSLDKSVKMW 429 (474)
Q Consensus 353 --~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~~~~~~~~l~s~s~Dg~i~vw 429 (474)
..-+++.++|++.++. ++.|.+||.. ++ .+..+..+.. +++++|. |++. .|+.++.++ +|
T Consensus 218 ~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~--~~~~~~~~~~-~~~~~f~~~d~~--------~L~v~t~~~---l~ 280 (296)
T 3e5z_A 218 GKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD--ELGRVLTPQT-TSNLCFGGPEGR--------TLYMTVSTE---FW 280 (296)
T ss_dssp SCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC--EEEEEECSSC-CCEEEEESTTSC--------EEEEEETTE---EE
T ss_pred CCCCeEEECCCCCEEEEc--CCeEEEECCC-CC--EEEEEECCCC-ceeEEEECCCCC--------EEEEEcCCe---EE
Confidence 2236777888866666 8899999987 44 3455666666 9999994 7777 677777663 55
Q ss_pred EccC
Q 047728 430 RVSE 433 (474)
Q Consensus 430 ~~~~ 433 (474)
.+..
T Consensus 281 ~~~~ 284 (296)
T 3e5z_A 281 SIET 284 (296)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5544
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.56 E-value=5.7e-13 Score=122.21 Aligned_cols=225 Identities=14% Similarity=0.149 Sum_probs=149.9
Q ss_pred eccCCeeEEEecCCCC-EEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC
Q 047728 218 KHFDAISSLSMSEDQN-LLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK 295 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~ 295 (474)
.+.....+++|+|+++ +++++..++.|..||..++ ...+..+...+.++++++++ ++++...++.|.+||...+..
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence 3566778999999998 7778888999999999876 56666677889999999999 444444568999999864432
Q ss_pred ceeeeeeeeee-cccccEEEEEEcCCCCEEEE----Ec-------------CCCcEEEeecCcccccceeeee-cceeeE
Q 047728 296 GTKHFFSQTLL-KQECAVTALAISPDAAIVYC----GS-------------SDGLVNFWERELNLSHGGVLRG-HKLAIL 356 (474)
Q Consensus 296 ~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~----~~-------------~dg~i~v~d~~~~~~~~~~~~~-~~~~v~ 356 (474)
. ....... .....+..++++|+|+++++ ++ ..+.|..++.. +. ....... ....-+
T Consensus 103 ~---~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi 177 (296)
T 3e5z_A 103 E---SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGL 177 (296)
T ss_dssp E---EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEE
T ss_pred E---EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccE
Confidence 1 1111111 11234678999999998887 33 13456666655 22 2112111 122347
Q ss_pred EEEecCCEEEEEeCCCcEEEEECC-CCce-EEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 357 CLVTAGNLVFSGSADMSICIWRRK-ENEH-ICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 357 ~~~~~~~~l~sgs~dg~i~iwd~~-~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+++++++.+++.+.++.|.+|++. .++. .....+..+...+.++++++++. ++++. ++.|.+|+.. +
T Consensus 178 ~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~--------l~v~~--~~~v~~~~~~-g 246 (296)
T 3e5z_A 178 AFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL--------IWASA--GDGVHVLTPD-G 246 (296)
T ss_dssp EECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC--------EEEEE--TTEEEEECTT-S
T ss_pred EECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC--------EEEEc--CCeEEEECCC-C
Confidence 788899988777888999999996 4443 11222244556678899999998 56555 7889999975 3
Q ss_pred CCCCCCCcccccccCCCCCCCccccCCCCCcCCceee
Q 047728 435 APPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQ 471 (474)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~ 471 (474)
.....+..+.. +++++|. ++|++.|.
T Consensus 247 -------~~~~~~~~~~~-~~~~~f~---~~d~~~L~ 272 (296)
T 3e5z_A 247 -------DELGRVLTPQT-TSNLCFG---GPEGRTLY 272 (296)
T ss_dssp -------CEEEEEECSSC-CCEEEEE---STTSCEEE
T ss_pred -------CEEEEEECCCC-ceeEEEE---CCCCCEEE
Confidence 23334444555 7777443 67887543
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.55 E-value=2.6e-12 Score=119.83 Aligned_cols=200 Identities=11% Similarity=0.106 Sum_probs=135.6
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCC----CcEEEEEcccC
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSAD----GTVKVWRRELQ 293 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~d----g~i~iwd~~~~ 293 (474)
+...+.+++|++++++++++..++.|.+||..+++.......+...+.++++++++ ++++...+ +.|.+||....
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 122 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence 55677899999999988888889999999998887655444566789999999999 44444444 58999997654
Q ss_pred CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC------CCcEEEeecCcccccceeee-ecceeeEEEEecCCEEE
Q 047728 294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS------DGLVNFWERELNLSHGGVLR-GHKLAILCLVTAGNLVF 366 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~ 366 (474)
... .. . ........+..++++|+++++++... .+.|..||...+... .... ......++++++++.|+
T Consensus 123 ~~~--~~-~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~ 197 (333)
T 2dg1_A 123 NLQ--DI-I-EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLW 197 (333)
T ss_dssp SCE--EE-E-CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEE
T ss_pred EEE--EE-E-ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEE
Confidence 321 00 0 11123457899999999988876654 356777776543322 1111 12233466778888665
Q ss_pred -EEeCCCcEEEEECCC-CceE-E-----EEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 367 -SGSADMSICIWRRKE-NEHI-C-----LSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 367 -sgs~dg~i~iwd~~~-~~~~-~-----~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
+...++.|.+||... +... . ...+.++ ..+..+++++++. ++++...++.|.+|+..
T Consensus 198 v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~--------l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 198 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDN--------LYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCC--------EEEEEETTTEEEEECTT
T ss_pred EEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCC--------EEEEEcCCCEEEEECCC
Confidence 445678999999963 2211 1 1112222 4678899999998 77777778899999974
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.55 E-value=1.2e-12 Score=118.25 Aligned_cols=197 Identities=8% Similarity=-0.010 Sum_probs=135.6
Q ss_pred CCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceee
Q 047728 221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKH 299 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~ 299 (474)
..+.++++.++++++++.. ++.|.+||................+..+++.+++ .+++...++.|.+|+......
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---- 141 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ---- 141 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC----
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee----
Confidence 4567899999988655554 8899999987654332211223568899999998 555556678899996543211
Q ss_pred eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-cceeeEEEEecCCEEEEEeCCCcEEEEE
Q 047728 300 FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-HKLAILCLVTAGNLVFSGSADMSICIWR 378 (474)
Q Consensus 300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sgs~dg~i~iwd 378 (474)
..........+..++++++++++++...++.|.+||............. .....+++.++|.++++...++.|.+||
T Consensus 142 --~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~ 219 (270)
T 1rwi_B 142 --TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL 219 (270)
T ss_dssp --EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred --EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence 1111222345788999999997777777889999998765432211111 2223356666787777777789999999
Q ss_pred CCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 379 RKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 379 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
....... .....+...+.++++++++. ++++...++.|+++++...
T Consensus 220 ~~~~~~~--~~~~~~~~~p~~i~~~~~g~--------l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 220 AGSTTST--VLPFTGLNTPLAVAVDSDRT--------VYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp TTCSCCE--ECCCCSCSCEEEEEECTTCC--------EEEEEGGGTEEEEECCCGG
T ss_pred CCCCcce--eeccCCCCCceeEEECCCCC--------EEEEECCCCEEEEEcCCCc
Confidence 8765422 22223345789999999998 8889999999999998765
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.54 E-value=2.5e-11 Score=111.05 Aligned_cols=263 Identities=10% Similarity=0.052 Sum_probs=170.1
Q ss_pred CccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728 147 NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS 224 (474)
Q Consensus 147 h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 224 (474)
+...+.+++++ +..+++...++.|.+|+.. +.... ... ..+...+.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~------------------------------~~~~~~~~ 60 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE-YPL------------------------------PTPDAKVM 60 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EEC------------------------------SSTTCCEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecC------------------------------CcccCcee
Confidence 45678899987 4444444457889999987 43211 100 01345688
Q ss_pred EEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee--ecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeee
Q 047728 225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI--AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFF 301 (474)
Q Consensus 225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~ 301 (474)
++++.+++.++++...++.|..||.. ++. ..+. .....+..+++.+++ ++++...++.|.+||. .+.. .
T Consensus 61 ~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~---- 132 (299)
T 2z2n_A 61 CLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI-R---- 132 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-E----
T ss_pred eEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE-E----
Confidence 99999999887777668889999976 332 2232 244578899999988 4455556788999987 2221 1
Q ss_pred eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecc--eeeEEEEecCCEEEEEeCCCcEEEEEC
Q 047728 302 SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK--LAILCLVTAGNLVFSGSADMSICIWRR 379 (474)
Q Consensus 302 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~sgs~dg~i~iwd~ 379 (474)
..........+..++++++++++++...++.|..||. ++........... ...+++.+++.+.++...++.|.+||.
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence 1112223457899999999988887777889999998 4432211111122 223555667887777667889999999
Q ss_pred CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCcccc
Q 047728 380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPY 459 (474)
Q Consensus 380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 459 (474)
+++.. ......+...+.++++.+++. ++++...++.|.+|+. ++. .....+..+...+.++
T Consensus 212 -~g~~~-~~~~~~~~~~~~~i~~~~~g~--------l~v~~~~~~~i~~~d~-~g~------~~~~~~~~~~~~~~~i-- 272 (299)
T 2z2n_A 212 -SGEIT-EFKIPTPNARPHAITAGAGID--------LWFTEWGANKIGRLTS-NNI------IEEYPIQIKSAEPHGI-- 272 (299)
T ss_dssp -TCCEE-EEECSSTTCCEEEEEECSTTC--------EEEEETTTTEEEEEET-TTE------EEEEECSSSSCCEEEE--
T ss_pred -CCcEE-EEECCCCCCCceeEEECCCCC--------EEEeccCCceEEEECC-CCc------eEEEeCCCCCCccceE--
Confidence 55532 223444556789999999988 6777667889999997 331 1111122333445566
Q ss_pred CCCCCcCCceeec
Q 047728 460 APSFSSQGRICQK 472 (474)
Q Consensus 460 ~p~~s~Dg~~l~~ 472 (474)
++ ++|++.+.
T Consensus 273 --~~-~~g~l~v~ 282 (299)
T 2z2n_A 273 --CF-DGETIWFA 282 (299)
T ss_dssp --EE-CSSCEEEE
T ss_pred --Ee-cCCCEEEE
Confidence 45 78888765
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.53 E-value=3.1e-12 Score=132.15 Aligned_cols=242 Identities=10% Similarity=0.017 Sum_probs=157.3
Q ss_pred cCccCEEEEEec--CCEEEEEeCCC-----eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeee
Q 047728 146 SNSGLVKAIVIS--NEKIFSGHQDG-----KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIK 218 (474)
Q Consensus 146 ~h~~~V~~i~~~--~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (474)
+|...+..++|+ +++|+.+..++ .|++||+.+++......
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--------------------------------- 168 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--------------------------------- 168 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE---------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc---------------------------------
Confidence 344568888998 56777665443 89999999886532110
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCc----------------EEEEEcCCccee--eeee--ecCcceeEEEecCCC-eEE
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKT----------------FKVWRTSDYKCL--ESVI--AHDDAVNSIVAGFDG-LVF 277 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~----------------i~iwd~~~~~~~--~~~~--~~~~~v~~v~~~~~~-~l~ 277 (474)
....+..++|+||++.|+.++.++. |++|++.+++.. ..+. .+...+..+.|+||+ .|+
T Consensus 169 ~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~ 248 (710)
T 2xdw_A 169 ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVL 248 (710)
T ss_dssp EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEE
T ss_pred cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEE
Confidence 1112668999999999999988766 999999887632 2222 244557889999999 555
Q ss_pred EeeC-----CCcEEEEEccc------CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC----CcEEEeecCccc
Q 047728 278 TGSA-----DGTVKVWRREL------QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD----GLVNFWERELNL 342 (474)
Q Consensus 278 ~~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~v~d~~~~~ 342 (474)
..+. +..|.+||+.. +.. ....+..+...+.. .|++++..|+..+.. +.|.+||+.+..
T Consensus 249 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-----~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 249 LSIREGCDPVNRLWYCDLQQESNGITGIL-----KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp EEEECSSSSCCEEEEEEGGGSSSSSCSSC-----CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred EEEEccCCCccEEEEEECcccccccCCcc-----ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 5543 56899999875 221 11223334444443 488888877766553 359999987753
Q ss_pred c-cceeeeecce--eeE--EEEecCCEEEEEeCCCc--EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceE
Q 047728 343 S-HGGVLRGHKL--AIL--CLVTAGNLVFSGSADMS--ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRW 415 (474)
Q Consensus 343 ~-~~~~~~~~~~--~v~--~~~~~~~~l~sgs~dg~--i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 415 (474)
. ....+..+.. .+. ++.+++.++++...|+. |.+||+.+++ .+..+..+.+.|..+.++|++..
T Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~--~~~~l~~~~~~v~~~~~s~d~~~------- 393 (710)
T 2xdw_A 323 ESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA--LLKIFPLEVGSVVGYSGQKKDTE------- 393 (710)
T ss_dssp GGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCC--EEEEECCCSSEEEEEECCTTCSE-------
T ss_pred cccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC--EEEecCCCCceEEEEecCCCCCE-------
Confidence 2 1123333322 343 34445667788888885 5566775665 34556667778899999998762
Q ss_pred EEEEec---CCCcEEEEEccCCC
Q 047728 416 ILYSGS---LDKSVKMWRVSEQA 435 (474)
Q Consensus 416 ~l~s~s---~Dg~i~vw~~~~~~ 435 (474)
++++.+ ..++|.+||+.+++
T Consensus 394 l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 394 IFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEeCCCCCCEEEEEECCCCc
Confidence 333333 45789999998765
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=1e-12 Score=135.36 Aligned_cols=272 Identities=11% Similarity=0.042 Sum_probs=167.2
Q ss_pred EEEEEEcCCEEEEeeCCC---cEEEEe--C-Ccccccc-------ccCccCEEEEEec--CCEEE-----EEeCCCeEEE
Q 047728 113 IYSLAAAGDLLYTGSDSK---NIRVWK--N-QREFSGF-------KSNSGLVKAIVIS--NEKIF-----SGHQDGKIRV 172 (474)
Q Consensus 113 i~~~~~~~~~l~tgs~dg---~v~vwd--~-~~~~~~~-------~~h~~~V~~i~~~--~~~l~-----s~~~dg~i~v 172 (474)
+....++|++++....++ .-.+|. . ......+ .+|...+..++|+ +++|+ .|+.+.+|++
T Consensus 72 ~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v 151 (695)
T 2bkl_A 72 VSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHV 151 (695)
T ss_dssp ECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEE
T ss_pred CCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEE
Confidence 444557888777665443 344553 2 1111111 2455678899998 56777 3444568999
Q ss_pred EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCC--eeEEEecCCCCEEEEEECCCc-------
Q 047728 173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDA--ISSLSMSEDQNLLYSASWDKT------- 243 (474)
Q Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~s~dg~------- 243 (474)
||+.+++..... +... ...++|+||++.|+.++.|..
T Consensus 152 ~dl~tg~~~~~~----------------------------------~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 152 IDVDSGEWSKVD----------------------------------VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp EETTTCCBCSSC----------------------------------CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred EECCCCCCcCCc----------------------------------ccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 999988653100 1111 257899999999999998876
Q ss_pred ------EEEEEcCCcc----eeeeeeecCcceeEEEecCCC-eEEEeeCCC----cEEEEEcccCCCceeeeeeeeeecc
Q 047728 244 ------FKVWRTSDYK----CLESVIAHDDAVNSIVAGFDG-LVFTGSADG----TVKVWRRELQGKGTKHFFSQTLLKQ 308 (474)
Q Consensus 244 ------i~iwd~~~~~----~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~ 308 (474)
|++|++.++. ++.....+...+..+.|+||| .|+..+.++ .|.+|+..... ...+..+
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-------~~~l~~~ 270 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-------FRLLVKG 270 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-------CEEEEEC
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-------eEEeecC
Confidence 9999998876 233333455678899999999 666665554 55565443221 1223334
Q ss_pred cccEEEEEEcCCCCEEEEEc---CCCcEEEeecCcccc--cceeeeec-ceeeEEEEe-cCCEEEEEeCCCcEEEEECC-
Q 047728 309 ECAVTALAISPDAAIVYCGS---SDGLVNFWERELNLS--HGGVLRGH-KLAILCLVT-AGNLVFSGSADMSICIWRRK- 380 (474)
Q Consensus 309 ~~~v~~l~~~~~~~~l~~~~---~dg~i~v~d~~~~~~--~~~~~~~~-~~~v~~~~~-~~~~l~sgs~dg~i~iwd~~- 380 (474)
...+....+ +++.+++... .++.|.+||+.++.. ...+...+ ...+..+.+ ++.++++...|+..+||.+.
T Consensus 271 ~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~ 349 (695)
T 2bkl_A 271 VGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATL 349 (695)
T ss_dssp SSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred CCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeC
Confidence 444555556 5555444443 257899999977542 12233332 333444444 56678888899988888665
Q ss_pred CCceEEEEeecCC-ccceEEEEEeeCCccccccceEEEEE---ecCCCcEEEEEccCCC
Q 047728 381 ENEHICLSMLTGH-SGPVKCLAVEKDDESLSREKRWILYS---GSLDKSVKMWRVSEQA 435 (474)
Q Consensus 381 ~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~l~s---~s~Dg~i~vw~~~~~~ 435 (474)
.++ ....+..+ .+.|..++++|++.. ++++ ....++|++||+.+++
T Consensus 350 ~g~--~~~~l~~~~~~~v~~~~~s~d~~~-------l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 350 KGK--PVRTVQLPGVGAASNLMGLEDLDD-------AYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp TCC--EEEECCCSSSSEECCCBSCTTCSE-------EEEEEEETTEEEEEEEEETTTCC
T ss_pred CCC--eeEEecCCCCeEEEEeecCCCCCE-------EEEEEcCCCCCCEEEEEECCCCc
Confidence 233 23445444 567888888988762 3333 3345789999998764
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=1.6e-12 Score=133.96 Aligned_cols=230 Identities=7% Similarity=-0.068 Sum_probs=144.9
Q ss_pred ccCCeeEEEecCCCCEEEE-----EECCCcEEEEEcCCccee-eeeeecCcceeEEEecCCC-eEEEeeCCCc-------
Q 047728 219 HFDAISSLSMSEDQNLLYS-----ASWDKTFKVWRTSDYKCL-ESVIAHDDAVNSIVAGFDG-LVFTGSADGT------- 284 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s-----~s~dg~i~iwd~~~~~~~-~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~------- 284 (474)
|...+..++|+|||++|+. |+.+..|++||+.+++.+ ... ........++|+||+ .|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV-IEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC-BSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc-cCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 5567899999999999983 444578999999998865 211 111112678999999 7888877765
Q ss_pred ------EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC----cEEEeecCcccccceeeeeccee
Q 047728 285 ------VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG----LVNFWERELNLSHGGVLRGHKLA 354 (474)
Q Consensus 285 ------i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg----~i~v~d~~~~~~~~~~~~~~~~~ 354 (474)
|++|++....... .+......+...+..+.|+|+|++|+..+.++ .|.+|+..++. ...+.......
T Consensus 198 ~~~~~~v~~~~l~t~~~~~--~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~ 274 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKD--TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAK 274 (695)
T ss_dssp GGGGCEEEEEETTSCGGGC--EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCC
T ss_pred CCCCCEEEEEECCCCchhc--eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCce
Confidence 9999987543211 12222334456788999999999988877665 67777654442 22222222222
Q ss_pred eEEEEecCCEEEEEe---CCCcEEEEECCCCceE-EEEeecCC-ccceEEEEEeeCCccccccceEEEEEecCCCcEEEE
Q 047728 355 ILCLVTAGNLVFSGS---ADMSICIWRRKENEHI-CLSMLTGH-SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429 (474)
Q Consensus 355 v~~~~~~~~~l~sgs---~dg~i~iwd~~~~~~~-~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw 429 (474)
...+.+++++++... .++.|.+||+.+++.. ....+..+ ...+..++|+ ++. ++++...|+..+||
T Consensus 275 ~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~--------lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 275 YEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH--------LSLEYLKDATSEVR 345 (695)
T ss_dssp EEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE--------EEEEEEETTEEEEE
T ss_pred EEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE--------EEEEEEECCEEEEE
Confidence 233346777444433 2588999999776420 01122223 4568888888 555 89999999999999
Q ss_pred EccCCCCCCCCCcccccccCC-CCCCCccccCCCCCcCCceee
Q 047728 430 RVSEQAPPLVSTTQQHPLEGH-GVAPNSLPYAPSFSSQGRICQ 471 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~p~~s~Dg~~l~ 471 (474)
.+.... .....+..+ ...+..+ ++++||+.++
T Consensus 346 ~~~~~g------~~~~~l~~~~~~~v~~~----~~s~d~~~l~ 378 (695)
T 2bkl_A 346 VATLKG------KPVRTVQLPGVGAASNL----MGLEDLDDAY 378 (695)
T ss_dssp EEETTC------CEEEECCCSSSSEECCC----BSCTTCSEEE
T ss_pred EEeCCC------CeeEEecCCCCeEEEEe----ecCCCCCEEE
Confidence 876321 122223332 3344444 6677886654
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.50 E-value=3.2e-12 Score=115.35 Aligned_cols=225 Identities=9% Similarity=0.020 Sum_probs=147.5
Q ss_pred CeeEEEecCCCCEEE-EEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeee
Q 047728 222 AISSLSMSEDQNLLY-SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHF 300 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 300 (474)
...++++++++++++ +...++.|.+||..+.........+...+.++++.+++.++++..++.|.+||......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~----- 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ----- 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC-----
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE-----
Confidence 678999999998666 44678999999976654332222333567899999988555554488999999764321
Q ss_pred eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-cceeeEEEEecCCEEEEEeCCCcEEEEEC
Q 047728 301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-HKLAILCLVTAGNLVFSGSADMSICIWRR 379 (474)
Q Consensus 301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sgs~dg~i~iwd~ 379 (474)
..........+..++++++++++++...++.|.+|+..+.......... .....+++.++++++++...++.|.+||.
T Consensus 100 -~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~ 178 (270)
T 1rwi_B 100 -TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA 178 (270)
T ss_dssp -EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECT
T ss_pred -eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEec
Confidence 1111122356899999999998887777889999986554322111111 12344677778887777777899999998
Q ss_pred CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCcccc
Q 047728 380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPY 459 (474)
Q Consensus 380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 459 (474)
...... .....+...+.++++.+++. ++++...++.|.+|+........ ....+-..+.++
T Consensus 179 ~~~~~~--~~~~~~~~~p~~i~~d~~g~--------l~v~~~~~~~v~~~~~~~~~~~~-------~~~~~~~~p~~i-- 239 (270)
T 1rwi_B 179 ESNNQV--VLPFTDITAPWGIAVDEAGT--------VYVTEHNTNQVVKLLAGSTTSTV-------LPFTGLNTPLAV-- 239 (270)
T ss_dssp TTCCEE--ECCCSSCCSEEEEEECTTCC--------EEEEETTTSCEEEECTTCSCCEE-------CCCCSCSCEEEE--
T ss_pred CCCceE--eecccCCCCceEEEECCCCC--------EEEEECCCCcEEEEcCCCCccee-------eccCCCCCceeE--
Confidence 876532 22233336789999999987 78888788999999986542111 111122334555
Q ss_pred CCCCCcCCceeecc
Q 047728 460 APSFSSQGRICQKR 473 (474)
Q Consensus 460 ~p~~s~Dg~~l~~~ 473 (474)
++++||++.++.
T Consensus 240 --~~~~~g~l~v~~ 251 (270)
T 1rwi_B 240 --AVDSDRTVYVAD 251 (270)
T ss_dssp --EECTTCCEEEEE
T ss_pred --EECCCCCEEEEE
Confidence 677889887753
No 194
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.48 E-value=1.1e-10 Score=115.96 Aligned_cols=235 Identities=11% Similarity=0.026 Sum_probs=154.1
Q ss_pred CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728 158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS 237 (474)
Q Consensus 158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 237 (474)
+..+++...++.|.++|..+++...... ....+..+.|+||++++++
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~---------------------------------~g~~p~~v~~SpDGr~lyv 213 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLD---------------------------------TGYAVHISRLSASGRYLFV 213 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEE---------------------------------CSSCEEEEEECTTSCEEEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEe---------------------------------CCCCccceEECCCCCEEEE
Confidence 3466777789999999999887654332 2234568999999999999
Q ss_pred EECCCcEEEEEcC--CcceeeeeeecCcceeEEEec----CCC-eEEE-eeCCCcEEEEEcccCCCceeeeeeeee--e-
Q 047728 238 ASWDKTFKVWRTS--DYKCLESVIAHDDAVNSIVAG----FDG-LVFT-GSADGTVKVWRRELQGKGTKHFFSQTL--L- 306 (474)
Q Consensus 238 ~s~dg~i~iwd~~--~~~~~~~~~~~~~~v~~v~~~----~~~-~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~--~- 306 (474)
++.|+.|.+||+. +++.+..+.... ....++++ |+| ++++ ...++.|.++|..+.+..... ..... .
T Consensus 214 ~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i-~~~~~~~~~ 291 (567)
T 1qks_A 214 IGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ-STRGMTYDE 291 (567)
T ss_dssp EETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEE-ECCEECTTT
T ss_pred EcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEE-ecccccccc
Confidence 9999999999996 788888776533 45789999 688 5544 455699999997654431111 10000 0
Q ss_pred --cc-cccEEEEEEcCCCCE-EEEEcCCCcEEEeecCcccccc--eeeeecceeeEEEEecCCEEEEEe-CCCcEEEEEC
Q 047728 307 --KQ-ECAVTALAISPDAAI-VYCGSSDGLVNFWERELNLSHG--GVLRGHKLAILCLVTAGNLVFSGS-ADMSICIWRR 379 (474)
Q Consensus 307 --~~-~~~v~~l~~~~~~~~-l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~ 379 (474)
.| ...+..+..++++.. ++....+|.|.++|........ .+..+....-..+++++++++++. .++.|.++|+
T Consensus 292 ~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 292 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 01 226788888987664 4445667999999987543221 111111222356888999887766 5789999999
Q ss_pred CCCceEEEEee-c--CCccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEccCCC
Q 047728 380 KENEHICLSML-T--GHSGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRVSEQA 435 (474)
Q Consensus 380 ~~~~~~~~~~~-~--~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~~~ 435 (474)
.+++....... . .|.+.-..+ ++|++.. +++++. .++.|.+++.....
T Consensus 372 ~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~-------v~~t~~~g~~~Vsvid~~~~~ 423 (567)
T 1qks_A 372 KEGKLVAIEDTGGQTPHPGRGANF-VHPTFGP-------VWATSHMGDDSVALIGTDPEG 423 (567)
T ss_dssp TTTEEEEEEECSSSSBCCTTCEEE-EETTTEE-------EEEEEBSSSSEEEEEECCTTT
T ss_pred CCCcEEEEEeccCcCCCCccceee-ECCCCCc-------EEEeCCCCCCeEEEecCCCCC
Confidence 98874433222 1 233222222 5776442 555553 56899999998743
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.46 E-value=5e-10 Score=102.32 Aligned_cols=270 Identities=10% Similarity=0.082 Sum_probs=172.5
Q ss_pred cCcEEEEEEc--CCEEEEeeCCCcEEEEeCCcccccc--ccCccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCccee
Q 047728 110 EGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGF--KSNSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIH 183 (474)
Q Consensus 110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~--~~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~ 183 (474)
...+.+++.+ |++.++...++.|.+|+....+..+ ..+...+.+++++ +..+++...++.|..||.. ++.. .
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~ 96 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-E 96 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-E
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-E
Confidence 4467777776 7777776678899999866333322 2234678889887 4445554557889999877 4321 1
Q ss_pred eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeee-eeecC
Q 047728 184 KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLES-VIAHD 262 (474)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~ 262 (474)
... ......+.++++.+++.++++...++.|..+|.. ++.... +....
T Consensus 97 ~~~------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~ 145 (300)
T 2qc5_A 97 YPL------------------------------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKG 145 (300)
T ss_dssp EEC------------------------------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTT
T ss_pred ecC------------------------------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCC
Confidence 110 0123467899999999887777668899999987 554422 22234
Q ss_pred cceeEEEecCCCe-EEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc
Q 047728 263 DAVNSIVAGFDGL-VFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN 341 (474)
Q Consensus 263 ~~v~~v~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~ 341 (474)
..+..+++.+++. +++...++.|..||.. ... . ..........+..++++++++++++....+.|.+||.. +
T Consensus 146 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~-~----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g 218 (300)
T 2qc5_A 146 SYPAFITLGSDNALWFTENQNNSIGRITNT-GKL-E----EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-G 218 (300)
T ss_dssp CCEEEEEECTTSSEEEEETTTTEEEEECTT-CCE-E----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-C
T ss_pred CCceeEEECCCCCEEEEecCCCeEEEECCC-CcE-E----EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-C
Confidence 5788999999884 4444457889999872 221 1 11122334568999999999888777777889999983 3
Q ss_pred cccceeeeeccee--eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEE
Q 047728 342 LSHGGVLRGHKLA--ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS 419 (474)
Q Consensus 342 ~~~~~~~~~~~~~--v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s 419 (474)
............. .+++.+++++.++...++.|..||.. ++.. ...+......+.++++.+++. ++++
T Consensus 219 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~~~~g~--------l~v~ 288 (300)
T 2qc5_A 219 EISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQ-EYQLQTENAEPHGITFGKDGS--------VWFA 288 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECCSTTCCCCCEEECTTSC--------EEEE
T ss_pred cEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEE-EEECCccCCccceeEeCCCCC--------EEEE
Confidence 2221111122222 34555677866666667999999984 4422 233343456689999999987 5555
Q ss_pred ecCCCcEEEEEc
Q 047728 420 GSLDKSVKMWRV 431 (474)
Q Consensus 420 ~s~Dg~i~vw~~ 431 (474)
.. . .|..++.
T Consensus 289 ~~-~-~i~~~~p 298 (300)
T 2qc5_A 289 LK-C-KIGKLNL 298 (300)
T ss_dssp CS-S-EEEEEEE
T ss_pred cc-C-ceEEeCC
Confidence 54 4 5666654
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.45 E-value=1.1e-10 Score=109.06 Aligned_cols=277 Identities=11% Similarity=0.054 Sum_probs=174.1
Q ss_pred EEcCCEEEEeeC-----CCcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEe----------CCCeEEEEecCC
Q 047728 117 AAAGDLLYTGSD-----SKNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGH----------QDGKIRVWKVSS 177 (474)
Q Consensus 117 ~~~~~~l~tgs~-----dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~----------~dg~i~vwd~~~ 177 (474)
.|+++.+++... ++.|.+.|.. +.+..+.....+ . ++++ +++++++. .++.|.+||..+
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t 118 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 118 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 356776666654 5789999854 444555444444 3 7776 66776665 367899999998
Q ss_pred CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC--CCcEEEEEcCCccee
Q 047728 178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW--DKTFKVWRTSDYKCL 255 (474)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~ 255 (474)
.+......+..-.. .........++|+|||++++++.. ++.|.++|+.+++.+
T Consensus 119 ~~v~~~I~v~~g~r-------------------------~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 119 LLPTADIELPDAPR-------------------------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp CCEEEEEEETTCCC-------------------------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred CeEEEEEECCCccc-------------------------cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence 87654433211000 001123457899999999998874 689999999999999
Q ss_pred eeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEE-EEEEc-CCCCEEEEEcCCC
Q 047728 256 ESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVT-ALAIS-PDAAIVYCGSSDG 331 (474)
Q Consensus 256 ~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~-~~~~~l~~~~~dg 331 (474)
.++..... ..+.|.+ .+++.+.||.+.+.++....+... .....+.....++. ...|. ++|++++ .+.+|
T Consensus 174 ~tI~v~g~----~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g 247 (386)
T 3sjl_D 174 RMLDVPDC----YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTG 247 (386)
T ss_dssp EEEECCSE----EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTS
T ss_pred EEEECCCc----ceeecCCCceeEEECCCCCEEEEECCCCCeEEE-eecceeccccccccccceeEcCCCcEEE-EeCCC
Confidence 88854221 1222433 677888899999999875333211 00111111112221 23554 5776555 55689
Q ss_pred cEEEeecCcccc--ccee-----------eeecceeeEEEEecCCEEEEEeC----------CCcEEEEECCCCceEEEE
Q 047728 332 LVNFWERELNLS--HGGV-----------LRGHKLAILCLVTAGNLVFSGSA----------DMSICIWRRKENEHICLS 388 (474)
Q Consensus 332 ~i~v~d~~~~~~--~~~~-----------~~~~~~~v~~~~~~~~~l~sgs~----------dg~i~iwd~~~~~~~~~~ 388 (474)
.|++.|+..... ...+ ........++++++++.++.... .+.|.++|+.+.+.+ .
T Consensus 248 ~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~--~ 325 (386)
T 3sjl_D 248 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL--A 325 (386)
T ss_dssp EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE--E
T ss_pred EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE--E
Confidence 999999865531 1111 11223345778888888887653 257999999998844 3
Q ss_pred eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 389 MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 389 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
.+.. ...+..|++++|++.. ++++...++.|.++|..+++
T Consensus 326 ~i~v-g~~~~~lavs~D~~~~------ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 326 KFEM-GHEIDSINVSQDEKPL------LYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEEE-EEEECEEEECSSSSCE------EEEEETTTTEEEEEETTTCC
T ss_pred EEEC-CCCcceEEECCCCCeE------EEEEcCCCCeEEEEECCCCc
Confidence 3332 2368899999998531 34445679999999998874
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.45 E-value=8.6e-11 Score=109.29 Aligned_cols=231 Identities=10% Similarity=0.023 Sum_probs=151.7
Q ss_pred EEEEEEcCCE-EEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec-CCEEEEEe-CCCeEEEEecCCCCcceeeeec
Q 047728 113 IYSLAAAGDL-LYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS-NEKIFSGH-QDGKIRVWKVSSKDASIHKRVG 187 (474)
Q Consensus 113 i~~~~~~~~~-l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~-~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~ 187 (474)
...+.++++. +++...++.|.+||.. +.+..+. .......++++ ++.++.+. .++.|.+||..+++........
T Consensus 46 ~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g 124 (328)
T 3dsm_A 46 AQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECP 124 (328)
T ss_dssp EEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECT
T ss_pred ceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcC
Confidence 5666777554 4455557899999954 4444453 34667888884 55777666 8999999999887654332221
Q ss_pred ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE--CCCcEEEEEcCCcceeeeeeecCcce
Q 047728 188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS--WDKTFKVWRTSDYKCLESVIAHDDAV 265 (474)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v 265 (474)
.. .+.......+++ ++..|+++. .++.|.++|..+++.+..+.. ....
T Consensus 125 ~~---------------------------~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p 174 (328)
T 3dsm_A 125 DM---------------------------DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQP 174 (328)
T ss_dssp TC---------------------------CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCB
T ss_pred Cc---------------------------cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCc
Confidence 10 001123446666 355666655 488999999999998887765 3445
Q ss_pred eEEEecCCCeEEEe-eCC----------CcEEEEEcccCCCceeeeeeeeee-cccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728 266 NSIVAGFDGLVFTG-SAD----------GTVKVWRRELQGKGTKHFFSQTLL-KQECAVTALAISPDAAIVYCGSSDGLV 333 (474)
Q Consensus 266 ~~v~~~~~~~l~~~-~~d----------g~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i 333 (474)
..+++.+++.++.+ ..+ +.|.++|...... ..... ........++++|+++.|+++.. .|
T Consensus 175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v------~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v 246 (328)
T 3dsm_A 175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV------EKQFKFKLGDWPSEVQLNGTRDTLYWINN--DI 246 (328)
T ss_dssp CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE------EEEEECCTTCCCEEEEECTTSCEEEEESS--SE
T ss_pred cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE------EEEEecCCCCCceeEEEecCCCEEEEEcc--EE
Confidence 78899999944444 333 7899999864431 11221 11346889999999999988765 89
Q ss_pred EEeecCcccccce-eee--ecceeeEEEEe-cCCEEEEE----eCCCcEEEEECCCCc
Q 047728 334 NFWERELNLSHGG-VLR--GHKLAILCLVT-AGNLVFSG----SADMSICIWRRKENE 383 (474)
Q Consensus 334 ~v~d~~~~~~~~~-~~~--~~~~~v~~~~~-~~~~l~sg----s~dg~i~iwd~~~~~ 383 (474)
.+||..++..... ... +....-+++++ ++.++++. ..++.|.+||.. ++
T Consensus 247 ~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 247 WRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp EEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred EEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 9999987654321 122 12334467777 45566665 578999999998 65
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.44 E-value=5.2e-10 Score=102.21 Aligned_cols=266 Identities=13% Similarity=0.095 Sum_probs=168.9
Q ss_pred CccCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCee
Q 047728 147 NSGLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAIS 224 (474)
Q Consensus 147 h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 224 (474)
....+.+++++ +...++...++.|.+|+.. ++... ... ......+.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~------------------------------~~~~~~~~ 65 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEV------------------------------PTPDAKVM 65 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EEC------------------------------SSTTCCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EEC------------------------------CCCCCcce
Confidence 34567888887 4455555567899999977 43221 110 01335688
Q ss_pred EEEecCCCCEEEEEECCCcEEEEEcCCcceee-eeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeee
Q 047728 225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE-SVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFS 302 (474)
Q Consensus 225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 302 (474)
++++.+++.++++...++.|..||.. ++... .+......+.++++.+++ ++++...++.|..||.. ... . .
T Consensus 66 ~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~----~ 138 (300)
T 2qc5_A 66 CLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-Y----E 138 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-E----E
T ss_pred eEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-E----E
Confidence 99999999877776667889999987 55432 122234678899999888 44555557889999875 221 1 1
Q ss_pred eeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeeccee--eEEEEecCCEEEEEeCCCcEEEEECC
Q 047728 303 QTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLA--ILCLVTAGNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 303 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~l~sgs~dg~i~iwd~~ 380 (474)
.........+..++++++++++++...++.|..||.. +............. .+++.+++++.++....+.|.+||.
T Consensus 139 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~- 216 (300)
T 2qc5_A 139 YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT- 216 (300)
T ss_dssp EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-
T ss_pred ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC-CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-
Confidence 1122244578999999999977777667889999983 32221111112222 3455566777776666788999998
Q ss_pred CCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccC
Q 047728 381 ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYA 460 (474)
Q Consensus 381 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 460 (474)
+++.. ...+..+...+.++++.+++. ++++...++.|..|+.. +.. ....+......+.++
T Consensus 217 ~g~~~-~~~~~~~~~~~~~i~~d~~g~--------l~v~~~~~~~i~~~~~~-g~~------~~~~~~~~~~~~~~i--- 277 (300)
T 2qc5_A 217 TGEIS-EYDIPTPNARPHAITAGKNSE--------IWFTEWGANQIGRITND-NTI------QEYQLQTENAEPHGI--- 277 (300)
T ss_dssp TCCEE-EEECSSTTCCEEEEEECSTTC--------EEEEETTTTEEEEECTT-SCE------EEEECCSTTCCCCCE---
T ss_pred CCcEE-EEECCCCCCCceEEEECCCCC--------EEEeccCCCeEEEECCC-CcE------EEEECCccCCcccee---
Confidence 44432 223344556789999999988 67777677899999873 311 111122223345555
Q ss_pred CCCCcCCceeecc
Q 047728 461 PSFSSQGRICQKR 473 (474)
Q Consensus 461 p~~s~Dg~~l~~~ 473 (474)
++++||++.+..
T Consensus 278 -~~~~~g~l~v~~ 289 (300)
T 2qc5_A 278 -TFGKDGSVWFAL 289 (300)
T ss_dssp -EECTTSCEEEEC
T ss_pred -EeCCCCCEEEEc
Confidence 667889887754
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.44 E-value=6.7e-12 Score=113.51 Aligned_cols=185 Identities=12% Similarity=0.027 Sum_probs=136.1
Q ss_pred CCCEEEEEECCCcEEEEEcCCcceeeeeeecC-cceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeec-c
Q 047728 231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLK-Q 308 (474)
Q Consensus 231 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~ 308 (474)
.+++|++++.|+.|.+||.++++.+..+..+. ..+.++.+.|+|.++. +.++.|..||. .++. ...+.. .
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~------~W~~~~~~ 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRE------LWNIAAPA 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCE------EEEEECCT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCE------EEEEcCCC
Confidence 35789999999999999999999999998766 4789999999994444 45788999997 3332 222222 2
Q ss_pred cccEEEEEEcCCCCEEEEEcC-CCcEEEeecCcccccceeee-----e-c-ceeeEEEEecCCEEEEEeCCCcEEEEECC
Q 047728 309 ECAVTALAISPDAAIVYCGSS-DGLVNFWERELNLSHGGVLR-----G-H-KLAILCLVTAGNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 309 ~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~-----~-~-~~~v~~~~~~~~~l~sgs~dg~i~iwd~~ 380 (474)
...+.++.+.++++++++.+. ++.|..+|.+ ++.+..... . | .....++.++|+++++...++.|..||..
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred CccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 346888999999999999877 7788888864 332222211 1 1 11224567789999999999999999998
Q ss_pred CCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 381 ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 381 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
++. +..+... ..+.++.+.+++. +++++..+++|..+|..+++.
T Consensus 155 -G~~--~w~~~~~-~~~~~~~~~~~g~--------~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 155 -GQL--LNSVKLS-GTPFSSAFLDNGD--------CLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp -SCE--EEEEECS-SCCCEEEECTTSC--------EEEECBTTSEEEEECTTTCCE
T ss_pred -CCE--EEEEECC-CCccceeEcCCCC--------EEEEeCCCCeEEEEeCcCCcE
Confidence 663 4455443 3566788888888 888888888899999887754
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.44 E-value=1.8e-11 Score=112.92 Aligned_cols=230 Identities=8% Similarity=0.036 Sum_probs=147.8
Q ss_pred ccCCeeEEEecCCCCEEEE-------EECCCcEEEEEcCCcceeeeee----ecCcceeEEEecCC-CeEEEeeCCCcEE
Q 047728 219 HFDAISSLSMSEDQNLLYS-------ASWDKTFKVWRTSDYKCLESVI----AHDDAVNSIVAGFD-GLVFTGSADGTVK 286 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s-------~s~dg~i~iwd~~~~~~~~~~~----~~~~~v~~v~~~~~-~~l~~~~~dg~i~ 286 (474)
......+++|.+++.++++ ...++.|.+||..+++...... ++...+.++++.++ +.++.++..+.|.
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~ 95 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEE
Confidence 4456789999999987777 5778999999988776543221 14467889999999 7666666666888
Q ss_pred EEEcccCCCceeeeeeeee-ecccccEEEEEEcCCCCEEEEEcCC---------------CcEEEeecCcccccceeee-
Q 047728 287 VWRRELQGKGTKHFFSQTL-LKQECAVTALAISPDAAIVYCGSSD---------------GLVNFWERELNLSHGGVLR- 349 (474)
Q Consensus 287 iwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~d---------------g~i~v~d~~~~~~~~~~~~- 349 (474)
+||.. +.. . ....... ......+..++++++++++++...+ +.|..||.. +... ....
T Consensus 96 ~~d~~-g~~-~-~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~ 170 (314)
T 1pjx_A 96 VVQTD-GTF-E-EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDTA 170 (314)
T ss_dssp EEETT-SCE-E-ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEEE
T ss_pred EEeCC-CCE-E-EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-EeccC
Confidence 99876 321 1 0000000 1122458899999999988776654 567777765 3221 1211
Q ss_pred ecceeeEEEE----ecCCEEEEE-eCCCcEEEEECC-CCceE---EEEeecCCc-cceEEEEEeeCCccccccceEEEEE
Q 047728 350 GHKLAILCLV----TAGNLVFSG-SADMSICIWRRK-ENEHI---CLSMLTGHS-GPVKCLAVEKDDESLSREKRWILYS 419 (474)
Q Consensus 350 ~~~~~v~~~~----~~~~~l~sg-s~dg~i~iwd~~-~~~~~---~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~l~s 419 (474)
.....-++++ ++++.|+.+ ..++.|.+||.. .++.. ....+..+. ..+..+++++++. ++++
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~--------l~v~ 242 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN--------LLVA 242 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC--------EEEE
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC--------EEEE
Confidence 1223346777 778665555 567899999986 34321 123344444 5688999999998 7777
Q ss_pred ecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCc-eeec
Q 047728 420 GSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGR-ICQK 472 (474)
Q Consensus 420 ~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~-~l~~ 472 (474)
...++.|.+|+..++.. ...+..+...+.++ +|++||+ +.++
T Consensus 243 ~~~~~~i~~~d~~~g~~-------~~~~~~~~~~~~~i----~~~~dg~~l~v~ 285 (314)
T 1pjx_A 243 NWGSSHIEVFGPDGGQP-------KMRIRCPFEKPSNL----HFKPQTKTIFVT 285 (314)
T ss_dssp EETTTEEEEECTTCBSC-------SEEEECSSSCEEEE----EECTTSSEEEEE
T ss_pred EcCCCEEEEEcCCCCcE-------eEEEeCCCCCceeE----EECCCCCEEEEE
Confidence 77788999999875532 12223333445666 6688898 5543
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=5e-11 Score=123.67 Aligned_cols=230 Identities=13% Similarity=0.014 Sum_probs=144.5
Q ss_pred ccCCeeEEEecCCCCEEEEEECC-----CcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCc---------
Q 047728 219 HFDAISSLSMSEDQNLLYSASWD-----KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGT--------- 284 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~--------- 284 (474)
|...+..++|+|||++|+.+..+ ..|++||+.+++.+... .+...+..++|+||..|+.+..++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------C
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccC
Confidence 44467899999999999877654 46999999999876532 2222346789999875666655543
Q ss_pred -----EEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-----cEEEeecCcccc--cceeeeecc
Q 047728 285 -----VKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-----LVNFWERELNLS--HGGVLRGHK 352 (474)
Q Consensus 285 -----i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~--~~~~~~~~~ 352 (474)
|++|++....... ........+...+..+.|+|||++|+..+.++ .|++||+.++.. ...+.....
T Consensus 240 ~~~~~v~~~~lgt~~~~~--~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 317 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSAD--QPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK 317 (741)
T ss_dssp CCCCEEEEEETTSCGGGC--EEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred CCCCEEEEEECCCCchhC--EEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence 8888875433211 11122222334588999999999888777543 799999876521 222322222
Q ss_pred eeeEEEEecCCEEEEEeCC----CcEEEEECCCCc-eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEE
Q 047728 353 LAILCLVTAGNLVFSGSAD----MSICIWRRKENE-HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVK 427 (474)
Q Consensus 353 ~~v~~~~~~~~~l~sgs~d----g~i~iwd~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~ 427 (474)
.....+.++++.|+..+.+ +.|.+||+.+.. . ....+..+...+..++|. ++. ++++...|+..+
T Consensus 318 ~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~l~~~~~~~l~~~~~~-~~~--------lv~~~~~dg~~~ 387 (741)
T 1yr2_A 318 AQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPR-FDTVVPESKDNLESVGIA-GNR--------LFASYIHDAKSQ 387 (741)
T ss_dssp SCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCE-EEEEECCCSSEEEEEEEE-BTE--------EEEEEEETTEEE
T ss_pred ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccc-cEEEecCCCCeEEEEEEE-CCE--------EEEEEEECCEEE
Confidence 3334456889988887754 459999998742 1 123344555567778887 444 788999999988
Q ss_pred EEEccCCCCCCCCCcccccccC-CCCCCCccccCCCCCcCCceee
Q 047728 428 MWRVSEQAPPLVSTTQQHPLEG-HGVAPNSLPYAPSFSSQGRICQ 471 (474)
Q Consensus 428 vw~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~p~~s~Dg~~l~ 471 (474)
||.+.... .....+.. ....+..+ ++++|++.++
T Consensus 388 l~~~~~~g------~~~~~l~~~~~~~v~~~----~~s~d~~~l~ 422 (741)
T 1yr2_A 388 VLAFDLDG------KPAGAVSLPGIGSASGL----SGRPGDRHAY 422 (741)
T ss_dssp EEEEETTS------CEEEECBCSSSCEEEEE----ECCBTCSCEE
T ss_pred EEEEeCCC------CceeeccCCCCeEEEEe----ecCCCCCEEE
Confidence 88776311 12222322 23334444 5677877554
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=4.6e-11 Score=123.97 Aligned_cols=276 Identities=13% Similarity=0.037 Sum_probs=166.4
Q ss_pred cEEEEEEcCCEEEEeeCCCc---EEEEe--C----Ccccccc-------ccCccCEEEEEec--CCEEEEEeCC-----C
Q 047728 112 HIYSLAAAGDLLYTGSDSKN---IRVWK--N----QREFSGF-------KSNSGLVKAIVIS--NEKIFSGHQD-----G 168 (474)
Q Consensus 112 ~i~~~~~~~~~l~tgs~dg~---v~vwd--~----~~~~~~~-------~~h~~~V~~i~~~--~~~l~s~~~d-----g 168 (474)
.+....++|++++....++. -.+|. . ......+ .+|...+..+.|+ +++|+.+..+ .
T Consensus 110 ~~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~ 189 (741)
T 1yr2_A 110 RFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWR 189 (741)
T ss_dssp EECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEE
T ss_pred ccCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceE
Confidence 34455588887776554432 55563 2 2222221 2333467888898 5677766543 3
Q ss_pred eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCc-----
Q 047728 169 KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKT----- 243 (474)
Q Consensus 169 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~----- 243 (474)
.|++||+.+++..... . +...+..++|+|| +.|+.++.++.
T Consensus 190 ~i~v~dl~tg~~~~~~-~--------------------------------~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 190 TVKFVGVADGKPLADE-L--------------------------------KWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp EEEEEETTTCCEEEEE-E--------------------------------EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred EEEEEECCCCCCCCcc-C--------------------------------CCceeccEEEECC-CEEEEEEecCcccccc
Confidence 6999999988753210 0 1112357899999 99988887654
Q ss_pred ---------EEEEEcCCcce--eeeeee--cCcceeEEEecCCC-eEEEeeCC-----CcEEEEEcccCCCceeeeeeee
Q 047728 244 ---------FKVWRTSDYKC--LESVIA--HDDAVNSIVAGFDG-LVFTGSAD-----GTVKVWRRELQGKGTKHFFSQT 304 (474)
Q Consensus 244 ---------i~iwd~~~~~~--~~~~~~--~~~~v~~v~~~~~~-~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~ 304 (474)
|++|++.++.. ...+.. +...+..+.|+||| .|+..+.+ ..|.+||+..+... ....
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~----~~~~ 311 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG----PVTA 311 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC----CCEE
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc----ccEE
Confidence 89999987653 222222 23357899999999 66655544 37999998754110 0122
Q ss_pred eecccccEEEEEEcCCCCEEEEEcCC----CcEEEeecCccc-ccceeeeecceeeEEEEe-cCCEEEEEeCCCcEEEEE
Q 047728 305 LLKQECAVTALAISPDAAIVYCGSSD----GLVNFWERELNL-SHGGVLRGHKLAILCLVT-AGNLVFSGSADMSICIWR 378 (474)
Q Consensus 305 ~~~~~~~v~~l~~~~~~~~l~~~~~d----g~i~v~d~~~~~-~~~~~~~~~~~~v~~~~~-~~~~l~sgs~dg~i~iwd 378 (474)
+..+...+... ++|+++.|+..+.+ +.|.+||+.+.. ....+...+...+..+++ ++.++++...|+..+||.
T Consensus 312 l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 312 LIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEE
T ss_pred ecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEE
Confidence 22333334444 34888888877653 459999987642 233344444444445555 455777888898887776
Q ss_pred CC-CCceEEEEeecC-CccceEEEEEeeCCccccccceEEEEE---ecCCCcEEEEEccCCC
Q 047728 379 RK-ENEHICLSMLTG-HSGPVKCLAVEKDDESLSREKRWILYS---GSLDKSVKMWRVSEQA 435 (474)
Q Consensus 379 ~~-~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~l~s---~s~Dg~i~vw~~~~~~ 435 (474)
+. .+. ....+.. +.+.|..+.++|++.. ++++ ....++|++||+.+++
T Consensus 391 ~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~-------l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 391 FDLDGK--PAGAVSLPGIGSASGLSGRPGDRH-------AYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EETTSC--EEEECBCSSSCEEEEEECCBTCSC-------EEEEEEETTEEEEEEEEETTTTE
T ss_pred EeCCCC--ceeeccCCCCeEEEEeecCCCCCE-------EEEEEcCCCCCCEEEEEECCCCc
Confidence 54 233 2344443 3567889999998763 3333 3345789999997754
No 203
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.42 E-value=6e-10 Score=105.21 Aligned_cols=274 Identities=8% Similarity=-0.005 Sum_probs=166.9
Q ss_pred EcCCEEEEeeC--CC---cEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEe----------CCCeEEEEecCCC
Q 047728 118 AAGDLLYTGSD--SK---NIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGH----------QDGKIRVWKVSSK 178 (474)
Q Consensus 118 ~~~~~l~tgs~--dg---~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~----------~dg~i~vwd~~~~ 178 (474)
++++++++... .. .|.+||.. +.+..+.....+ .++++ +++++.+. .++.|.+||..+.
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 44555555442 22 78888844 334344433333 67776 66777775 3678999999876
Q ss_pred CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC--CCcEEEEEcCCcceee
Q 047728 179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW--DKTFKVWRTSDYKCLE 256 (474)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~ 256 (474)
+............ +. +......++|+||+++|+++.. ++.|.++| .+++.+.
T Consensus 108 ~~~~~i~~~~~~~------------------------~~-~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 108 LPIADIELPDAPR------------------------FD-VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred cEEEEEECCCccc------------------------cc-cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEe
Confidence 5543322210000 00 1123458899999999999874 57899999 9998887
Q ss_pred e-eeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc-EEEEEEcCCCCEEEEEcCCCc
Q 047728 257 S-VIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA-VTALAISPDAAIVYCGSSDGL 332 (474)
Q Consensus 257 ~-~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~~dg~ 332 (474)
. +... . ++.+.+++ .+++.+.||.+.++|. .............. ....+ .....+.+++..++..+..+.
T Consensus 162 ~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~ 235 (373)
T 2mad_H 162 QLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGK 235 (373)
T ss_pred EEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc-cCCcceeecceeEecCCEEEEEcCCce
Confidence 7 5432 2 24444555 6677788999999998 44321110000001 11122 223456666655555557888
Q ss_pred EEEeecCccccc-ceee------------eecceeeEEEEecCCEEEEEeC----------CCcEEEEECCCCceEEEEe
Q 047728 333 VNFWERELNLSH-GGVL------------RGHKLAILCLVTAGNLVFSGSA----------DMSICIWRRKENEHICLSM 389 (474)
Q Consensus 333 i~v~d~~~~~~~-~~~~------------~~~~~~v~~~~~~~~~l~sgs~----------dg~i~iwd~~~~~~~~~~~ 389 (474)
+.+.|+...... ...+ .......+.++++++.+++... .+.|.++|..+.+. +..
T Consensus 236 v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v--v~~ 313 (373)
T 2mad_H 236 ILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQ 313 (373)
T ss_pred EEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE--EEE
Confidence 999998654211 1111 1122233677888888887653 35799999998874 344
Q ss_pred ecCCccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEccCCC
Q 047728 390 LTGHSGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRVSEQA 435 (474)
Q Consensus 390 ~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~~~ 435 (474)
+.. .....+++|+||++. +++++. .++.|.+||+.+.+
T Consensus 314 i~~-g~~p~~i~~s~Dg~~-------~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 314 ISL-GHDVDAISVAQDGGP-------DLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEC-CCCcCeEEECCCCCe-------EEEEEcCCCCeEEEEECCCCC
Confidence 432 235899999999873 455555 58999999998874
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=3e-10 Score=104.75 Aligned_cols=239 Identities=9% Similarity=0.042 Sum_probs=150.0
Q ss_pred cEEEEEEc--CCEEEE-------eeCCCcEEEEeCC-cccccccc-----CccCEEEEEec-C-CEEEEEeCCCeEEEEe
Q 047728 112 HIYSLAAA--GDLLYT-------GSDSKNIRVWKNQ-REFSGFKS-----NSGLVKAIVIS-N-EKIFSGHQDGKIRVWK 174 (474)
Q Consensus 112 ~i~~~~~~--~~~l~t-------gs~dg~v~vwd~~-~~~~~~~~-----h~~~V~~i~~~-~-~~l~s~~~dg~i~vwd 174 (474)
...+++++ ++++++ +..++.|.+||.. ..+..+.. +...+.+++++ . ..|+.+...+.|.+|+
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d 98 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEe
Confidence 34566664 777777 6778899999843 33333322 45678899997 3 5777776666799999
Q ss_pred cCCCCccee-eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC------------
Q 047728 175 VSSKDASIH-KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD------------ 241 (474)
Q Consensus 175 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d------------ 241 (474)
.+ ++.... .... . ......+.++++.++++++++...+
T Consensus 99 ~~-g~~~~~~~~~~--~--------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~ 149 (314)
T 1pjx_A 99 TD-GTFEEIAKKDS--E--------------------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ 149 (314)
T ss_dssp TT-SCEEECCSBCT--T--------------------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred CC-CCEEEEEeccC--C--------------------------CccccCCcCEEECCCCCEEEEecCccccccccccccc
Confidence 87 543211 0000 0 0023457899999999887776654
Q ss_pred ---CcEEEEEcCCcceeeeeeecCcceeEEEec----CCC-eEEEe-eCCCcEEEEEcccCCCceeeeeeeeeeccc-cc
Q 047728 242 ---KTFKVWRTSDYKCLESVIAHDDAVNSIVAG----FDG-LVFTG-SADGTVKVWRRELQGKGTKHFFSQTLLKQE-CA 311 (474)
Q Consensus 242 ---g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~----~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~ 311 (474)
+.|..||.. ++... +..+......++++ +++ .++++ ..++.|.+||+.................+. ..
T Consensus 150 ~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 227 (314)
T 1pjx_A 150 EKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG 227 (314)
T ss_dssp SSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE
T ss_pred CCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC
Confidence 567777765 44433 33334456889999 998 55444 567899999986322111111112222233 56
Q ss_pred EEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceee--EEEEecCCEEEE-EeCCCcEEEEECCCC
Q 047728 312 VTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAI--LCLVTAGNLVFS-GSADMSICIWRRKEN 382 (474)
Q Consensus 312 v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s-gs~dg~i~iwd~~~~ 382 (474)
+..++++++++++++...++.|.+||.+++.... .+..+...+ ++++++++.|+. ...++.|..|++...
T Consensus 228 p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKM-RIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSE-EEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeE-EEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 7889999999988887788899999988554332 222332333 455578885554 455688999998643
No 205
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.39 E-value=1.2e-11 Score=116.04 Aligned_cols=171 Identities=10% Similarity=0.003 Sum_probs=121.5
Q ss_pred EEEEEcCCEEEEeeCCCcEEEEeCCccc------------cccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcc
Q 047728 114 YSLAAAGDLLYTGSDSKNIRVWKNQREF------------SGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDAS 181 (474)
Q Consensus 114 ~~~~~~~~~l~tgs~dg~v~vwd~~~~~------------~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~ 181 (474)
.+++....+|++|+.++ +++|++.... .....+.. |+.++|++..|+++ .++.|++||+.+....
T Consensus 43 Lais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~ 119 (388)
T 1xip_A 43 LDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVS-TRNALYSLDLEELSEF 119 (388)
T ss_dssp EEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEE-ESSEEEEEESSSTTCE
T ss_pred EEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEE-cCCcEEEEEchhhhcc
Confidence 34444578999999885 6669743221 12234566 99999977888888 8899999999876532
Q ss_pred eeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeec
Q 047728 182 IHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH 261 (474)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 261 (474)
.. ...|...+.++.+.+. .+++++.||.|.+||+.++.... +
T Consensus 120 ~~--------------------------------~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~ 161 (388)
T 1xip_A 120 RT--------------------------------VTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----L 161 (388)
T ss_dssp EE--------------------------------EEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----E
T ss_pred Cc--------------------------------cceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----c
Confidence 11 1125566777776654 38889999999999999877643 4
Q ss_pred CcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeee--eeeee---cccccEEEEEEcCCCCEEEE
Q 047728 262 DDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFF--SQTLL---KQECAVTALAISPDAAIVYC 326 (474)
Q Consensus 262 ~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~---~~~~~v~~l~~~~~~~~l~~ 326 (474)
...|.|++|+|+| ++.|..||.+++|+........+..+ ..... .|...|.++.|.+++.++++
T Consensus 162 ~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 162 AQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCceEEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 5689999999999 77899999999998764431001111 01112 36788999999999988876
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.38 E-value=2.4e-10 Score=109.52 Aligned_cols=233 Identities=10% Similarity=0.081 Sum_probs=153.8
Q ss_pred cCEEEEEec--CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEE
Q 047728 149 GLVKAIVIS--NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL 226 (474)
Q Consensus 149 ~~V~~i~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 226 (474)
.....|+++ ++.+++...++.|++||.+++....... ...... +
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~---------------------------------~~~~~~-i 176 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP---------------------------------GFKGGK-P 176 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE---------------------------------TCCBCB-C
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec---------------------------------cCCCCc-e
Confidence 357788887 3445555567899999998765432111 112233 8
Q ss_pred EecCCCCEEEEEECCC--cEEEEEcCCcceeeee----eecCcceeEEEecC-CCeEEEeeCCCcEEEEEcccCCCceee
Q 047728 227 SMSEDQNLLYSASWDK--TFKVWRTSDYKCLESV----IAHDDAVNSIVAGF-DGLVFTGSADGTVKVWRRELQGKGTKH 299 (474)
Q Consensus 227 ~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~----~~~~~~v~~v~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~ 299 (474)
+|+++++.|+++..++ .|.+|+...+.....+ ......+.+++++| ++.|+++..++.|+.||...... ..
T Consensus 177 a~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~--~~ 254 (409)
T 3hrp_A 177 AVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV--TL 254 (409)
T ss_dssp EECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE--EE
T ss_pred eEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE--EE
Confidence 9999999999988766 7899988765543333 21446678999999 56666677788999999874431 11
Q ss_pred eeeeeeecccccE--EEEEEcCC-CCEEEEEcCCCcEEEeecCcccccceeeeec-----------------ceeeEEEE
Q 047728 300 FFSQTLLKQECAV--TALAISPD-AAIVYCGSSDGLVNFWERELNLSHGGVLRGH-----------------KLAILCLV 359 (474)
Q Consensus 300 ~~~~~~~~~~~~v--~~l~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----------------~~~v~~~~ 359 (474)
............- ..++|+|+ +.++++-..++.|+.|+..... ..+.++ ...-+++.
T Consensus 255 ~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~---~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d 331 (409)
T 3hrp_A 255 IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC---EWFCGSATQKTVQDGLREEALFAQPNGMTVD 331 (409)
T ss_dssp EEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE---EEEEECTTCCSCBCEEGGGCBCSSEEEEEEC
T ss_pred EecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE---EEEEeCCCCCCcCCCcccccEeCCCeEEEEe
Confidence 1000011111111 38999995 5566666678899999976541 112221 12346777
Q ss_pred ecCCEEEEEe-CCCcEEEEECCCCceEEEEeecCC---------------ccceEEEEEeeCCccccccceEEEEEecCC
Q 047728 360 TAGNLVFSGS-ADMSICIWRRKENEHICLSMLTGH---------------SGPVKCLAVEKDDESLSREKRWILYSGSLD 423 (474)
Q Consensus 360 ~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~h---------------~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D 423 (474)
++|+++++-. .++.|+.|+..++.. ..+.++ -.....+++++++. ++++-..+
T Consensus 332 ~dG~lyvad~~~~~~I~~~~~~~G~v---~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~--------lyVad~~n 400 (409)
T 3hrp_A 332 EDGNFYIVDGFKGYCLRKLDILDGYV---STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG--------YWIAEAWG 400 (409)
T ss_dssp TTCCEEEEETTTTCEEEEEETTTTEE---EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE--------EEEEESTT
T ss_pred CCCCEEEEeCCCCCEEEEEECCCCEE---EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC--------EEEEECCC
Confidence 8899877777 889999999877753 333333 24588999999987 78888888
Q ss_pred CcEEEEEc
Q 047728 424 KSVKMWRV 431 (474)
Q Consensus 424 g~i~vw~~ 431 (474)
++|+.+++
T Consensus 401 ~~Ir~i~~ 408 (409)
T 3hrp_A 401 KAIRKYAV 408 (409)
T ss_dssp CEEEEEEE
T ss_pred CeEEEEEe
Confidence 89988876
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.35 E-value=4.4e-11 Score=112.14 Aligned_cols=168 Identities=12% Similarity=-0.003 Sum_probs=121.0
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEEcCCcc---------eee-eeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEc
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYK---------CLE-SVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRR 290 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~---------~~~-~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~ 290 (474)
.++.+++++...++++|+.++ +++|++.+.+ ... ....+.. |+.++| ++ .|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 689999999999999999875 6669876443 111 2234566 999999 55 77777 8899999999
Q ss_pred ccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeC
Q 047728 291 ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSA 370 (474)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~ 370 (474)
+..... .....+...+.++.+.+.. +++++.||.|.+||+....... ........|++++| ++.|..
T Consensus 114 ~sl~~~------~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~ 180 (388)
T 1xip_A 114 EELSEF------RTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLK 180 (388)
T ss_dssp SSTTCE------EEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEET
T ss_pred hhhhcc------CccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEc
Confidence 865532 2233445567777776543 8888999999999998665431 22334445555566 788999
Q ss_pred CCcEEEEECCCCceEEEEee------c---CCccceEEEEEeeCCc
Q 047728 371 DMSICIWRRKENEHICLSML------T---GHSGPVKCLAVEKDDE 407 (474)
Q Consensus 371 dg~i~iwd~~~~~~~~~~~~------~---~h~~~v~~l~~~~~~~ 407 (474)
||.+++|+....+.....++ . +|...|.+|.|.+++.
T Consensus 181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence 99999999887762112334 2 4778999999999887
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.35 E-value=1.2e-09 Score=99.93 Aligned_cols=214 Identities=12% Similarity=0.096 Sum_probs=137.0
Q ss_pred CEEEEEec---CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEE
Q 047728 150 LVKAIVIS---NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL 226 (474)
Q Consensus 150 ~V~~i~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 226 (474)
.-.+..|+ +..+++...++.|..||..++.... ......+.++
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~----------------------------------~~~~~~~~~i 59 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR----------------------------------VTMDAPVSSV 59 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE----------------------------------EECSSCEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE----------------------------------EeCCCceEEE
Confidence 34566666 2355566678899999988764311 0134568899
Q ss_pred EecCCCCEEEEEECCCcEEEEEcCCcceeeeeee----cCcceeEEEecCCCeEEEeeC----------CCcEEEEEccc
Q 047728 227 SMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA----HDDAVNSIVAGFDGLVFTGSA----------DGTVKVWRREL 292 (474)
Q Consensus 227 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~v~~v~~~~~~~l~~~~~----------dg~i~iwd~~~ 292 (474)
+++++++++++ . +..|.+||..+++....... ....++.+++.++|.++.++. ...-.+|.+..
T Consensus 60 ~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~ 137 (297)
T 3g4e_A 60 ALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP 137 (297)
T ss_dssp EEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT
T ss_pred EECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC
Confidence 99999995554 4 56799999988765433222 123578899999995444432 23345666553
Q ss_pred CCCceeeeeeeeeecccccEEEEEEcCCCCEEEE-EcCCCcEEEeecC--ccccc-ceee---eecc--eeeEEEEecCC
Q 047728 293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC-GSSDGLVNFWERE--LNLSH-GGVL---RGHK--LAILCLVTAGN 363 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~v~d~~--~~~~~-~~~~---~~~~--~~v~~~~~~~~ 363 (474)
.... ............++|+|+++.|++ .+.++.|.+||+. ++... ...+ ..+. ..-+++.++|+
T Consensus 138 ~g~~------~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~ 211 (297)
T 3g4e_A 138 DHHV------KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK 211 (297)
T ss_dssp TSCE------EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred CCCE------EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC
Confidence 3221 112223345688999999987654 5567889999873 33211 0111 1111 22356667888
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEe-eCCc
Q 047728 364 LVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE-KDDE 407 (474)
Q Consensus 364 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~ 407 (474)
+.++...++.|..||..+++ .+..+..+...+++++|. |+++
T Consensus 212 lwva~~~~~~v~~~d~~tG~--~~~~i~~p~~~~t~~~f~g~d~~ 254 (297)
T 3g4e_A 212 LWVACYNGGRVIRLDPVTGK--RLQTVKLPVDKTTSCCFGGKNYS 254 (297)
T ss_dssp EEEEEETTTEEEEECTTTCC--EEEEEECSSSBEEEEEEESGGGC
T ss_pred EEEEEcCCCEEEEEcCCCce--EEEEEECCCCCceEEEEeCCCCC
Confidence 88888888899999998777 345566666789999998 7776
No 209
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.34 E-value=1.2e-09 Score=103.61 Aligned_cols=267 Identities=10% Similarity=0.026 Sum_probs=162.5
Q ss_pred EEEEEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCc
Q 047728 114 YSLAAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPT 191 (474)
Q Consensus 114 ~~~~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 191 (474)
..+..++..|+.++.++.|..+|.. +.+................++.++.++.++.|..+|..+++............
T Consensus 97 ~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 97 GGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp EEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred cCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 3455568888889999999999854 33333332222222233447789999999999999999887665443211000
Q ss_pred cceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcc-------
Q 047728 192 FKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDA------- 264 (474)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~------- 264 (474)
.+..... ... .+..++.++.++.|..+|..+++.+.........
T Consensus 177 -----------------------~~~~~~~----~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 227 (376)
T 3q7m_A 177 -----------------------SLRGESA----PTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR 227 (376)
T ss_dssp -------------------------CCCCC----CEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC---------
T ss_pred -----------------------eecCCCC----cEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccccc
Confidence 0000111 111 1457888888999999999999987766532110
Q ss_pred ---eeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc
Q 047728 265 ---VNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN 341 (474)
Q Consensus 265 ---v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~ 341 (474)
+.......++.+++++.++.|..+|.+.+..... . .......+.. ++..+++++.++.|..+|..++
T Consensus 228 ~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~------~--~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 228 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWK------R--ELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp --CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEE------E--CCCCEEEEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred ccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEee------c--cCCCCCCceE--ECCEEEEEcCCCeEEEEECCCC
Confidence 1111111245788888999999999876543111 1 1122333333 4667888888999999999888
Q ss_pred cccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEec
Q 047728 342 LSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGS 421 (474)
Q Consensus 342 ~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s 421 (474)
+...................+..|+.++.+|.|.++|..+++.. .........+.......++ .|+.++
T Consensus 298 ~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~--~~~~~~~~~~~~~~~~~~~---------~l~v~~ 366 (376)
T 3q7m_A 298 VTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFV--AQQKVDSSGFQTEPVAADG---------KLLIQA 366 (376)
T ss_dssp CEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEE--EEEECCTTCBCSCCEEETT---------EEEEEB
T ss_pred cEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEE--EEEecCCCcceeCCEEECC---------EEEEEe
Confidence 65433221111122222335788999999999999999998843 3333322333322222344 578888
Q ss_pred CCCcEEEEE
Q 047728 422 LDKSVKMWR 430 (474)
Q Consensus 422 ~Dg~i~vw~ 430 (474)
.||.|..|+
T Consensus 367 ~~G~l~~~~ 375 (376)
T 3q7m_A 367 KDGTVYSIT 375 (376)
T ss_dssp TTSCEEEEE
T ss_pred CCCEEEEEe
Confidence 999999887
No 210
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.33 E-value=4.7e-09 Score=99.48 Aligned_cols=269 Identities=10% Similarity=0.078 Sum_probs=164.6
Q ss_pred EcCCEEEEeeCCCcEEEEeCC--ccccccccC---------ccCE-EEEEecCCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728 118 AAGDLLYTGSDSKNIRVWKNQ--REFSGFKSN---------SGLV-KAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKR 185 (474)
Q Consensus 118 ~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h---------~~~V-~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 185 (474)
..++.|++++.++.|..+|.. +.+-.+... ...+ ..+...++.++.++.++.|..+|..+++......
T Consensus 51 v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 51 LADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 347788888888889888853 333222221 1223 4455568899999999999999999987665433
Q ss_pred ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcce
Q 047728 186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV 265 (474)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v 265 (474)
..... ...+ .. .+..++.++.++.|..+|..+++.+..........
T Consensus 131 ~~~~~----------------------------~~~p----~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 131 VAGEA----------------------------LSRP----VV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp CSSCC----------------------------CSCC----EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred CCCce----------------------------EcCC----EE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 22100 1111 11 24578888899999999999999887765432211
Q ss_pred -----eEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc-cccEEEEEEcC--CCCEEEEEcCCCcEEEee
Q 047728 266 -----NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ-ECAVTALAISP--DAAIVYCGSSDGLVNFWE 337 (474)
Q Consensus 266 -----~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~--~~~~l~~~~~dg~i~v~d 337 (474)
...... ++.++++..++.|..+|...+............... ...+..+...| .+..+++++.++.+..+|
T Consensus 177 ~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 177 SLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp --CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred eecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 122222 458888999999999998765432111100000000 00000011111 356778888899999999
Q ss_pred cCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeec-CCccceEEEEEeeCCccccccceEE
Q 047728 338 RELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLT-GHSGPVKCLAVEKDDESLSREKRWI 416 (474)
Q Consensus 338 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~~~~ 416 (474)
.++++....... .....+..++..++.++.++.|..+|..+++.. .... .....+...... +. .
T Consensus 256 ~~tG~~~w~~~~---~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~--w~~~~~~~~~~~~~~~~--~~--------~ 320 (376)
T 3q7m_A 256 LRSGQIMWKREL---GSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTL--WTQSDLLHRLLTSPVLY--NG--------N 320 (376)
T ss_dssp TTTCCEEEEECC---CCEEEEEEETTEEEEEETTCCEEEEETTTCCEE--EEECTTTTSCCCCCEEE--TT--------E
T ss_pred CCCCcEEeeccC---CCCCCceEECCEEEEEcCCCeEEEEECCCCcEE--EeecccCCCcccCCEEE--CC--------E
Confidence 988765433221 223445557889999999999999999998743 3333 112222223332 23 6
Q ss_pred EEEecCCCcEEEEEccCCCC
Q 047728 417 LYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 417 l~s~s~Dg~i~vw~~~~~~~ 436 (474)
|+.++.+|.|.++|..+++.
T Consensus 321 l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 321 LVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp EEEECTTSEEEEEETTTCCE
T ss_pred EEEEeCCCeEEEEECCCCcE
Confidence 88888999999999988743
No 211
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.30 E-value=2.1e-09 Score=102.16 Aligned_cols=275 Identities=8% Similarity=-0.002 Sum_probs=171.6
Q ss_pred cCCEEEEeeC-C----CcEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEe----------CCCeEEEEecCCCC
Q 047728 119 AGDLLYTGSD-S----KNIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGH----------QDGKIRVWKVSSKD 179 (474)
Q Consensus 119 ~~~~l~tgs~-d----g~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~----------~dg~i~vwd~~~~~ 179 (474)
+++.+++... + +.|.++|.. +.+..+.....+ .++++ +++|+++. .++.|.++|..+.+
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 4565555544 2 689999954 444555444445 67777 66677665 46789999999887
Q ss_pred cceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC--CCcEEEEEcCCcceeee
Q 047728 180 ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW--DKTFKVWRTSDYKCLES 257 (474)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~ 257 (474)
......+...... ........+.|+||+++|+++.. ++.|.+.|+.+++.+..
T Consensus 161 vv~~I~v~g~~r~-------------------------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~ 215 (426)
T 3c75_H 161 PIADIELPDAPRF-------------------------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRM 215 (426)
T ss_dssp EEEEEEETTCCCC-------------------------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred EEEEEECCCcccc-------------------------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEE
Confidence 6544333200000 01122346789999999999874 57899999999999888
Q ss_pred eeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccccc-EEEEEEcCCCCEEEEEcCCCcEE
Q 047728 258 VIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECA-VTALAISPDAAIVYCGSSDGLVN 334 (474)
Q Consensus 258 ~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~~~~~dg~i~ 334 (474)
+..... ....|++ .+++.+.||.+.+.+...... ... ....+.....+ ...+.+.+++..++.....+.|.
T Consensus 216 I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v-~~~-~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ 289 (426)
T 3c75_H 216 LDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGET-KVT-NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIF 289 (426)
T ss_dssp EECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCC-EEE-ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEE
T ss_pred EEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcE-EEE-eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEE
Confidence 764221 2333443 666777888888888733221 110 00011111111 12356788888887778889999
Q ss_pred EeecCcccccc-ee------------eeecceeeEEEEecCCEEEEEeC----------CCcEEEEECCCCceEEEEeec
Q 047728 335 FWERELNLSHG-GV------------LRGHKLAILCLVTAGNLVFSGSA----------DMSICIWRRKENEHICLSMLT 391 (474)
Q Consensus 335 v~d~~~~~~~~-~~------------~~~~~~~v~~~~~~~~~l~sgs~----------dg~i~iwd~~~~~~~~~~~~~ 391 (474)
+.|........ .. ........+.++++++.+++... ++.|.++|..+.+.+ ..+.
T Consensus 290 ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv--~~I~ 367 (426)
T 3c75_H 290 QADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI--NKIE 367 (426)
T ss_dssp EEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE--EEEE
T ss_pred EEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE--EEEE
Confidence 99985432110 00 11122223688999887777642 357999999998843 4443
Q ss_pred CCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 392 GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 392 ~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
. ......++|+||++.. ++++...++.|.++|+.+.+
T Consensus 368 v-g~~P~gia~spDg~~~------lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 368 L-GHEIDSINVSQDAEPL------LYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp E-EEEECEEEECCSSSCE------EEEEETTTTEEEEEETTTCC
T ss_pred C-CCCcCeEEEccCCCEE------EEEEcCCCCeEEEEECCCCC
Confidence 2 1258899999998731 44444469999999999874
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.29 E-value=4.2e-10 Score=107.80 Aligned_cols=198 Identities=13% Similarity=0.060 Sum_probs=133.7
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCC--cEEEEEcccCCCc
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADG--TVKVWRRELQGKG 296 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg--~i~iwd~~~~~~~ 296 (474)
......|+|+++++++++...++.|++||..++........ ..... +++++++ .|+++..++ .|.+|+.......
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 34678999999998777777779999999988776554443 33334 8999998 777777766 7888887643321
Q ss_pred eeeeeeeeeec-ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccccee---eeec-c-e-e-eEEEEec-CCEEEE
Q 047728 297 TKHFFSQTLLK-QECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV---LRGH-K-L-A-ILCLVTA-GNLVFS 367 (474)
Q Consensus 297 ~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~-~-~-~-v~~~~~~-~~~l~s 367 (474)
. . ...... ....+.+++++|++..|+++..++.|+.||..+....... ..+. . . . -++++++ +.++++
T Consensus 208 ~--~-~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 208 T--R-IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp E--E-EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred E--E-eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 0 1 111112 4456788999996556666777889999998766422110 1111 1 1 1 5778885 556666
Q ss_pred EeCCCcEEEEECCCCceEEEEeecCC---------------ccceEEEEEeeCCccccccceEEEEEec-CCCcEEEEEc
Q 047728 368 GSADMSICIWRRKENEHICLSMLTGH---------------SGPVKCLAVEKDDESLSREKRWILYSGS-LDKSVKMWRV 431 (474)
Q Consensus 368 gs~dg~i~iwd~~~~~~~~~~~~~~h---------------~~~v~~l~~~~~~~~~~~~~~~~l~s~s-~Dg~i~vw~~ 431 (474)
-..++.|+.|+...... .+.++ -.....+++++++. ++++-. .+++|+.|++
T Consensus 285 d~~~~~I~~~~~~g~~~----~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~--------lyvad~~~~~~I~~~~~ 352 (409)
T 3hrp_A 285 DQNLSSVYKITPDGECE----WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN--------FYIVDGFKGYCLRKLDI 352 (409)
T ss_dssp ETTTTEEEEECTTCCEE----EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC--------EEEEETTTTCEEEEEET
T ss_pred eCCCCEEEEEecCCCEE----EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC--------EEEEeCCCCCEEEEEEC
Confidence 66788999999875421 22222 13478999999998 788887 8999999997
Q ss_pred cCC
Q 047728 432 SEQ 434 (474)
Q Consensus 432 ~~~ 434 (474)
.++
T Consensus 353 ~~G 355 (409)
T 3hrp_A 353 LDG 355 (409)
T ss_dssp TTT
T ss_pred CCC
Confidence 665
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.27 E-value=6.8e-09 Score=94.94 Aligned_cols=222 Identities=12% Similarity=0.091 Sum_probs=134.2
Q ss_pred CCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeee
Q 047728 120 GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKC 198 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 198 (474)
+.++++...++.|..||..............+.+++++ ...|+.+. ++.|.+||.++++.........
T Consensus 25 ~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~---------- 93 (297)
T 3g4e_A 25 NSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDN---------- 93 (297)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCT----------
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCC----------
Confidence 55777777889999999653322223345678999998 33355555 5579999988765322111000
Q ss_pred ecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECC---------CcEEEEEcCCcceeeeeeecCcceeEEE
Q 047728 199 SMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWD---------KTFKVWRTSDYKCLESVIAHDDAVNSIV 269 (474)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~v~ 269 (474)
......++++++.|+|+++++...+ ..-.+|.+.....+..+..+....+.++
T Consensus 94 ------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~ 155 (297)
T 3g4e_A 94 ------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLD 155 (297)
T ss_dssp ------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEE
T ss_pred ------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceE
Confidence 0012347889999999866654322 2345555543222333334445668999
Q ss_pred ecCCC--eEEEeeCCCcEEEEEccc-CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccce
Q 047728 270 AGFDG--LVFTGSADGTVKVWRREL-QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG 346 (474)
Q Consensus 270 ~~~~~--~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 346 (474)
|+|++ ++++.+.++.|.+||+.. ...................+..++++++|++.++....+.|.+||..+++....
T Consensus 156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEE
T ss_pred EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEE
Confidence 99998 445666688999999742 221111111122223345688999999998888877788999999987655433
Q ss_pred eeee-cceeeEEEE-ecCCEEEEEeC
Q 047728 347 VLRG-HKLAILCLV-TAGNLVFSGSA 370 (474)
Q Consensus 347 ~~~~-~~~~v~~~~-~~~~~l~sgs~ 370 (474)
+... .....++|. ++++.|+..+.
T Consensus 236 i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 236 VKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EECCCCCceEEEEeCCCCCEEEEEcC
Confidence 3322 223345555 56666655553
No 214
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.24 E-value=1.8e-09 Score=110.43 Aligned_cols=279 Identities=9% Similarity=0.070 Sum_probs=165.1
Q ss_pred cCCEEEEeeCCCcEEEEeC--CccccccccCcc----------C-EEEEEecCCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728 119 AGDLLYTGSDSKNIRVWKN--QREFSGFKSNSG----------L-VKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKR 185 (474)
Q Consensus 119 ~~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~~----------~-V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 185 (474)
.+..|++++.++.|..+|. ++.+-.+..... . -..+.+.++.|+.++.|+.|..+|..+++......
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence 4667777777888888874 333332221110 0 12234568899999999999999999998776544
Q ss_pred ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE------CCCcEEEEEcCCcceeeeee
Q 047728 186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS------WDKTFKVWRTSDYKCLESVI 259 (474)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~ 259 (474)
...... ..+.....++ +. ++ .++.++ .++.|+.||.++++.+..+.
T Consensus 149 ~~~~~~----------------------~~~~~~~sP~----v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 149 TRADHK----------------------RSYTITGAPR----VV-NG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp CCSCTT----------------------SCCBCCSCCE----EE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CcCCCC----------------------CCccccCCcE----EE-CC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 320000 0000011111 11 33 444443 36899999999999887765
Q ss_pred ecC-------------------------------cceeEEEecCCC-eEEEeeCCCc-------------------EEEE
Q 047728 260 AHD-------------------------------DAVNSIVAGFDG-LVFTGSADGT-------------------VKVW 288 (474)
Q Consensus 260 ~~~-------------------------------~~v~~v~~~~~~-~l~~~~~dg~-------------------i~iw 288 (474)
... .....+++.++. +++.+..++. |..|
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 210 011246777765 7888877763 9999
Q ss_pred EcccCCCceeeeeeee-e--ecccccEEEEEEcCCCC---EEEEEcCCCcEEEeecCcccccceeeee------------
Q 047728 289 RRELQGKGTKHFFSQT-L--LKQECAVTALAISPDAA---IVYCGSSDGLVNFWERELNLSHGGVLRG------------ 350 (474)
Q Consensus 289 d~~~~~~~~~~~~~~~-~--~~~~~~v~~l~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------ 350 (474)
|.++++.......... . ......+.......+++ .++.++.+|.++++|.++++.+......
T Consensus 281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~ 360 (689)
T 1yiq_A 281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT 360 (689)
T ss_dssp ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence 9887654221110000 0 00111222222223554 7888999999999999888654211100
Q ss_pred ----------------------------cceeeEEEEecCCEEEEEeC--------------------------------
Q 047728 351 ----------------------------HKLAILCLVTAGNLVFSGSA-------------------------------- 370 (474)
Q Consensus 351 ----------------------------~~~~v~~~~~~~~~l~sgs~-------------------------------- 370 (474)
+.-.-++++++..++++...
T Consensus 361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 440 (689)
T 1yiq_A 361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP 440 (689)
T ss_dssp TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence 00111566777777776532
Q ss_pred -------------CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 371 -------------DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 371 -------------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
+|.|..||+.+++. +.....+ .++..-.+...+. +++.++.||.|+.||..+++.
T Consensus 441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~--~W~~~~~-~~~~~g~~~tagg--------lvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 441 EGAEGLLEMAKSWSGKLIAWDPVKQQA--AWEVPYV-TIFNGGTLSTAGN--------LVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp SSHHHHHHHHTTCEEEEEEEETTTTEE--EEEEEES-SSCCCCEEEETTT--------EEEEECTTSEEEEEETTTCCE
T ss_pred cccccCCCCCCCcceeEEEEECCCCCe--EeEccCC-CCccCccceECCC--------EEEEECCCCcEEEEECCCCcc
Confidence 37799999999984 3344333 2344445666666 888999999999999999854
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.23 E-value=4.1e-09 Score=96.84 Aligned_cols=232 Identities=8% Similarity=0.056 Sum_probs=141.0
Q ss_pred eeeeecCcEEEEE--EcCC-EEEEeeCCCcEEEEeCCccccccccCccCEEEEEec-CCEEEEEe-CCCeEEEEecCCCC
Q 047728 105 SLVREEGHIYSLA--AAGD-LLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS-NEKIFSGH-QDGKIRVWKVSSKD 179 (474)
Q Consensus 105 ~l~~h~~~i~~~~--~~~~-~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~-~~~l~s~~-~dg~i~vwd~~~~~ 179 (474)
.+........... ++++ +++++..++.|..|+.......+..+...+..++++ ...|+++. .++.|.+|+.+ ++
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence 3333333344444 4577 778888889999998765566666677789999998 33455554 45789999875 33
Q ss_pred cceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE----EEC-------------CC
Q 047728 180 ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS----ASW-------------DK 242 (474)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s----~s~-------------dg 242 (474)
........ . ......+.++++.++|+++++ |.. .+
T Consensus 118 ~~~~~~~~--~--------------------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~ 169 (305)
T 3dr2_A 118 AHLLVGRY--A--------------------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHH 169 (305)
T ss_dssp EEEEECEE--T--------------------------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred EEEEEecc--C--------------------------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCC
Confidence 21110000 0 002245678999999988876 332 25
Q ss_pred cEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCC------CcEEEEEcccCCCceeeeeeeeeecccccEEEE
Q 047728 243 TFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSAD------GTVKVWRRELQGKGTKHFFSQTLLKQECAVTAL 315 (474)
Q Consensus 243 ~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l 315 (474)
.|..||..+++..... .......++|+|++ .|+.+... +.|.+|++..... ... .............+
T Consensus 170 ~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~~--~~~~~~~~~~pdgi 244 (305)
T 3dr2_A 170 SVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-HDR--RHFASVPDGLPDGF 244 (305)
T ss_dssp EEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-EEE--EEEECCSSSCCCSE
T ss_pred eEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-cCC--eEEEECCCCCCCeE
Confidence 6777877666654433 34556889999999 56666554 6899999874321 100 01111123345678
Q ss_pred EEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCc
Q 047728 316 AISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMS 373 (474)
Q Consensus 316 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~ 373 (474)
+++++|++. ++..+ .|.+|+.+.. ....+........+++.++++.|+.++.++.
T Consensus 245 ~~d~~G~lw-v~~~~-gv~~~~~~g~-~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 245 CVDRGGWLW-SSSGT-GVCVFDSDGQ-LLGHIPTPGTASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp EECTTSCEE-ECCSS-EEEEECTTSC-EEEEEECSSCCCEEEECTTSCEEEEEETTEE
T ss_pred EECCCCCEE-EecCC-cEEEECCCCC-EEEEEECCCceeEEEEeCCCCEEEEEcCCeE
Confidence 999999944 44444 4999998533 3322322223344566678888888877643
No 216
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.23 E-value=8.9e-10 Score=112.39 Aligned_cols=274 Identities=7% Similarity=0.076 Sum_probs=167.5
Q ss_pred cCCEEEEeeCCCcEEEEeCC--ccccccccCc-----------cCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728 119 AGDLLYTGSDSKNIRVWKNQ--REFSGFKSNS-----------GLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKR 185 (474)
Q Consensus 119 ~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~-----------~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 185 (474)
.+..|++++.++.|..+|.. +.+-.+.... .....+++.++.|+.++.|+.|..+|..+++......
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 36666667767777777733 3222222110 0112345568899999999999999999998776554
Q ss_pred ec-ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC------CCcEEEEEcCCcceeeee
Q 047728 186 VG-TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW------DKTFKVWRTSDYKCLESV 258 (474)
Q Consensus 186 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~ 258 (474)
.. ..... ..-...++ + .+..++.++. ++.|+.||..+++.+..+
T Consensus 156 ~~~~~~~~-----------------------~~~~~~p~----v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 156 TFEGQKGS-----------------------LTITGAPR----V--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp TTTTCCSS-----------------------CBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCcCcCcC-----------------------cccccCcE----E--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 32 10000 00000111 1 2345555543 689999999999998777
Q ss_pred eecCcc--------------------------------eeEEEecCCC-eEEEeeCCC-------------------cEE
Q 047728 259 IAHDDA--------------------------------VNSIVAGFDG-LVFTGSADG-------------------TVK 286 (474)
Q Consensus 259 ~~~~~~--------------------------------v~~v~~~~~~-~l~~~~~dg-------------------~i~ 286 (474)
...... ...+++.+++ .++.+..++ .|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 542211 1246777776 777776654 488
Q ss_pred EEEcccCCCceeeeeeeeeecc-------cccEEEEEEcCCC---CEEEEEcCCCcEEEeecCcccccceeeeec-----
Q 047728 287 VWRRELQGKGTKHFFSQTLLKQ-------ECAVTALAISPDA---AIVYCGSSDGLVNFWERELNLSHGGVLRGH----- 351 (474)
Q Consensus 287 iwd~~~~~~~~~~~~~~~~~~~-------~~~v~~l~~~~~~---~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~----- 351 (474)
.+|.++++...... ...+ ......+....+| ..++.++.+|.++++|.++++.+.......
T Consensus 287 AlD~~TG~~~W~~~----~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 287 ALDPDTGKYKWHYQ----ETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp EECTTTCCEEEEEE----SSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEECCCCCEEEEEe----cCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 88887654321111 1111 1122223333466 688899999999999998886643322110
Q ss_pred -------------------------------ceeeEEEEecCCEEEEEeCC-----------------------------
Q 047728 352 -------------------------------KLAILCLVTAGNLVFSGSAD----------------------------- 371 (474)
Q Consensus 352 -------------------------------~~~v~~~~~~~~~l~sgs~d----------------------------- 371 (474)
.-...+++++..++++...+
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 00134677777888775432
Q ss_pred --------------CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 372 --------------MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 372 --------------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
|.|..||+.+++.. .... +..++....+..++. +++.++.||.+++||..+++.
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~--W~~~-~~~~~~~g~~~~~g~--------~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAA--WSVE-HVSPWNGGTLTTAGN--------VVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEE--EEEE-ESSSCCCCEEEETTT--------EEEEECTTSEEEEEETTTCCE
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEE--eecC-CCCCCcCcceEeCCC--------EEEEECCCCcEEEEECCCCce
Confidence 78999999998843 3333 334455566777777 788889999999999999853
No 217
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.20 E-value=2.1e-09 Score=99.73 Aligned_cols=264 Identities=16% Similarity=0.129 Sum_probs=161.7
Q ss_pred cCcEEEEEEc-CCEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728 110 EGHIYSLAAA-GDLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVG 187 (474)
Q Consensus 110 ~~~i~~~~~~-~~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 187 (474)
...+.++..+ +..|+.++.+ |..+|.. +.+..+...........+.++.|+.++.++.|..+|.. ++.......
T Consensus 59 ~~~~~~~~~~~~g~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~- 134 (330)
T 3hxj_A 59 EIIECRPSIGKDGTIYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKT- 134 (330)
T ss_dssp GEEEECCEETTTTEECCSSCE--EEEECCCGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEEC-
T ss_pred CCcccceEEecCCcEEEecCc--EEEECCCCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcC-
Confidence 3445677776 5577777766 8888743 33333332332233333447888999999999999987 543322111
Q ss_pred ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeE
Q 047728 188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNS 267 (474)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 267 (474)
....+.++...+++. |+.++.++.|..+|.. ++.+..+......+.+
T Consensus 135 -------------------------------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~ 181 (330)
T 3hxj_A 135 -------------------------------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSA 181 (330)
T ss_dssp -------------------------------SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSC
T ss_pred -------------------------------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceee
Confidence 222344556666665 6667888999999988 8777777666667778
Q ss_pred EEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccccee
Q 047728 268 IVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGV 347 (474)
Q Consensus 268 v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 347 (474)
+...+++.+..++ +.|..+| ..+.. ..........+.++...+++.+. +++.++.|..+|.... .....
T Consensus 182 ~~~d~~g~l~v~t--~~l~~~d-~~g~~------~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~~g~-~~~~~ 250 (330)
T 3hxj_A 182 ASIGKDGTIYFGS--DKVYAIN-PDGTE------KWNFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAINPDGT-EKWRF 250 (330)
T ss_dssp CEECTTCCEEEES--SSEEEEC-TTSCE------EEEECCSSCCCSCCEECTTSCEE-EEETTTEEEEECTTSC-EEEEE
T ss_pred eEEcCCCEEEEEe--CEEEEEC-CCCcE------EEEEccCCcceeceEECCCCeEE-EEcCCCeEEEECCCCC-EeEEe
Confidence 8887788777776 8899998 43221 11222233557778888877654 4667788888875332 22222
Q ss_pred eeecceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcE
Q 047728 348 LRGHKLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSV 426 (474)
Q Consensus 348 ~~~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i 426 (474)
.. .......+..+ +..|+.++.+|.|..+|. +++. +..+......+.++...+++. |+.++.+|.+
T Consensus 251 ~~-~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~--~~~~~~~~~~~~~~~~d~~g~---------l~~gt~~G~~ 317 (330)
T 3hxj_A 251 KT-GKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTE--KWNFETGSWIIATPVIDENGT---------IYFGTRNGKF 317 (330)
T ss_dssp EC-SSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCE--EEEEECSSCCCSCCEECTTCC---------EEEECTTSCE
T ss_pred eC-CCCccccceEcCCCeEEEecCCCCEEEECC-CCcE--EEEEEcCCccccceEEcCCCE---------EEEEcCCCeE
Confidence 11 11111112223 557778888989999996 4553 333333445677777777775 6778899999
Q ss_pred EEEEccCC
Q 047728 427 KMWRVSEQ 434 (474)
Q Consensus 427 ~vw~~~~~ 434 (474)
++......
T Consensus 318 ~~~~~~~~ 325 (330)
T 3hxj_A 318 YALFNLEH 325 (330)
T ss_dssp EEEEC---
T ss_pred EEEecccc
Confidence 99887654
No 218
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.19 E-value=9.8e-09 Score=104.92 Aligned_cols=283 Identities=17% Similarity=0.143 Sum_probs=163.6
Q ss_pred EEcCCEEEEeeCCCcEEEEeC--CccccccccC--c---cCEE-EEEecCCEEEEEe------CCCeEEEEecCCCCcce
Q 047728 117 AAAGDLLYTGSDSKNIRVWKN--QREFSGFKSN--S---GLVK-AIVISNEKIFSGH------QDGKIRVWKVSSKDASI 182 (474)
Q Consensus 117 ~~~~~~l~tgs~dg~v~vwd~--~~~~~~~~~h--~---~~V~-~i~~~~~~l~s~~------~dg~i~vwd~~~~~~~~ 182 (474)
+..+..|++++.|+.|..+|. ++.+-.+... . ..+. +..+.++.++.+. .+|.|..||..+++...
T Consensus 118 ~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 118 AVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred EEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 445778889999999999984 3443333221 0 1111 1112356666654 37899999999998876
Q ss_pred eeeecc-cCccceeeeeecCCCCeEEE--eeecccee---eeccCCeeEEEecCCCCEEEEEECCCc-------------
Q 047728 183 HKRVGT-LPTFKDFIKCSMKPSNYIEV--RRHRNGLW---IKHFDAISSLSMSEDQNLLYSASWDKT------------- 243 (474)
Q Consensus 183 ~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~dg~------------- 243 (474)
...... .+... +. ...+.. .......| .++......+++.|+..+++.++.++.
T Consensus 198 ~~~~~~~~p~~~-~~------~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd 270 (689)
T 1yiq_A 198 RFYTVPGDPKLP-PE------GKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGD 270 (689)
T ss_dssp EEESSCCCTTSC-CC------SHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSC
T ss_pred EecccCCCcccc-cc------cccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCC
Confidence 554211 00000 00 000000 00000000 012222346788898889999987764
Q ss_pred ------EEEEEcCCcceeeeeeec--C-------cceeEEEecCCC----eEEEeeCCCcEEEEEcccCCCceeeeeee-
Q 047728 244 ------FKVWRTSDYKCLESVIAH--D-------DAVNSIVAGFDG----LVFTGSADGTVKVWRRELQGKGTKHFFSQ- 303 (474)
Q Consensus 244 ------i~iwd~~~~~~~~~~~~~--~-------~~v~~v~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~- 303 (474)
|..||..+++.+..+... . .++.......++ .++.++.+|.++++|.++++.........
T Consensus 271 ~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~ 350 (689)
T 1yiq_A 271 NLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQ 350 (689)
T ss_dssp CTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC
T ss_pred ceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccc
Confidence 999999999998877642 1 111111222244 58889999999999988765421110000
Q ss_pred ----e-----------------eecccc-----------cEEEEEEcCCCCEEEEEcC----------------------
Q 047728 304 ----T-----------------LLKQEC-----------AVTALAISPDAAIVYCGSS---------------------- 329 (474)
Q Consensus 304 ----~-----------------~~~~~~-----------~v~~l~~~~~~~~l~~~~~---------------------- 329 (474)
. ...... .-..++++|+..++++...
T Consensus 351 ~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (689)
T 1yiq_A 351 SWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMY 430 (689)
T ss_dssp SSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSC
T ss_pred ccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccc
Confidence 0 000000 0112788898888877532
Q ss_pred -----------------------CCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEE
Q 047728 330 -----------------------DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHIC 386 (474)
Q Consensus 330 -----------------------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~ 386 (474)
+|.|..||+.+++..-....+.....-.+...+.+++.|+.||.|+.||.++++.
T Consensus 431 ~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~-- 508 (689)
T 1yiq_A 431 QLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK-- 508 (689)
T ss_dssp CCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE--
T ss_pred ccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCcc--
Confidence 3779999999887654443332222235666889999999999999999999984
Q ss_pred EEeecCCcc-ceEEEEEeeCCcc
Q 047728 387 LSMLTGHSG-PVKCLAVEKDDES 408 (474)
Q Consensus 387 ~~~~~~h~~-~v~~l~~~~~~~~ 408 (474)
+..+....+ ...-+.|..+++.
T Consensus 509 lw~~~~~~~~~~~p~ty~~~G~q 531 (689)
T 1yiq_A 509 LWEQPAASGVMAAPVTYSVDGEQ 531 (689)
T ss_dssp EEEEECSSCCCSCCEEEEETTEE
T ss_pred ceeeeCCCCcccCceEEEECCEE
Confidence 444443322 2244667788773
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.18 E-value=2.5e-08 Score=92.42 Aligned_cols=210 Identities=12% Similarity=0.089 Sum_probs=128.3
Q ss_pred EEEEecC--C-EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728 152 KAIVISN--E-KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM 228 (474)
Q Consensus 152 ~~i~~~~--~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 228 (474)
.+..|+. + .+++...++.|..|+.++++... . .....+.++++
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~---------------------------------~~~~~v~~i~~ 97 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-H---------------------------------ALPFMGSALAK 97 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E---------------------------------ECSSCEEEEEE
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E---------------------------------ECCCcceEEEE
Confidence 3455552 3 45566667889999887653211 0 02346889999
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCcceeeeeee----cCcceeEEEecCCCeEEEeeCC-----CcEEEEEcccCCCceee
Q 047728 229 SEDQNLLYSASWDKTFKVWRTSDYKCLESVIA----HDDAVNSIVAGFDGLVFTGSAD-----GTVKVWRRELQGKGTKH 299 (474)
Q Consensus 229 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~v~~v~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~ 299 (474)
.++++++++. .+ .|.+||..+++....... ....+++++++++|.++.++.+ +...||.+. ... .
T Consensus 98 ~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~--~- 171 (326)
T 2ghs_A 98 ISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGK--V- 171 (326)
T ss_dssp EETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTE--E-
T ss_pred eCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCc--E-
Confidence 9998776654 44 499999988775432211 1235789999999944444432 234455444 221 1
Q ss_pred eeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecC--cc-ccc-ceeee---ecc--eeeEEEEecCCEEEEEe
Q 047728 300 FFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERE--LN-LSH-GGVLR---GHK--LAILCLVTAGNLVFSGS 369 (474)
Q Consensus 300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~--~~-~~~-~~~~~---~~~--~~v~~~~~~~~~l~sgs 369 (474)
............++|+|+++.|+.+ +.++.|.+||+. ++ ... ...+. ... ..-+++..+|++.++..
T Consensus 172 ---~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~ 248 (326)
T 2ghs_A 172 ---TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW 248 (326)
T ss_dssp ---EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred ---EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe
Confidence 1111223356789999999877555 557899999985 43 211 11111 111 22355566788777776
Q ss_pred CCCcEEEEECCCCceEEEEeecCCccceEEEEEe-eCCc
Q 047728 370 ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE-KDDE 407 (474)
Q Consensus 370 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~ 407 (474)
.++.|.+||.. ++. +..+..+...+++++|. +++.
T Consensus 249 ~~~~v~~~d~~-g~~--~~~i~~~~~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 249 GEGAVDRYDTD-GNH--IARYEVPGKQTTCPAFIGPDAS 284 (326)
T ss_dssp TTTEEEEECTT-CCE--EEEEECSCSBEEEEEEESTTSC
T ss_pred CCCEEEEECCC-CCE--EEEEECCCCCcEEEEEecCCCC
Confidence 77899999984 442 34555566679999998 7766
No 220
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.18 E-value=1.6e-08 Score=103.16 Aligned_cols=307 Identities=15% Similarity=0.108 Sum_probs=179.0
Q ss_pred EEEcCCEEEEeeCCCcEEEEeC--CccccccccC-c----cCEE-EEEecCCEEEEEeC------CCeEEEEecCCCCcc
Q 047728 116 LAAAGDLLYTGSDSKNIRVWKN--QREFSGFKSN-S----GLVK-AIVISNEKIFSGHQ------DGKIRVWKVSSKDAS 181 (474)
Q Consensus 116 ~~~~~~~l~tgs~dg~v~vwd~--~~~~~~~~~h-~----~~V~-~i~~~~~~l~s~~~------dg~i~vwd~~~~~~~ 181 (474)
++..+..|++++.|+.|..+|. ++.+-.+..+ . ..+. .....++.++.++. +|.|+.||..+++..
T Consensus 124 ~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 124 VALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 4446788899999999999984 4444444332 1 1111 12233667777664 799999999999887
Q ss_pred eeeeecccCccceeeeeecCCCCeEEEeeeccceee--eccCCeeEEEecCCCCEEEEEECCC-----------------
Q 047728 182 IHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWI--KHFDAISSLSMSEDQNLLYSASWDK----------------- 242 (474)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~dg----------------- 242 (474)
.............+..... ......+......+. +.......+++.+++.+|+.++.++
T Consensus 204 W~~~~~~~~~~~~~~~~~~--~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~ 281 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESM--KRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY 281 (677)
T ss_dssp EEEESSCCCTTSCCSSHHH--HHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEeccCCCCcccccccccc--ccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence 6554322110000000000 000000000000000 2233334678889888999887664
Q ss_pred --cEEEEEcCCcceeeeeeecCc---------ceeEEEecCCC----eEEEeeCCCcEEEEEcccCCCceeeeeee----
Q 047728 243 --TFKVWRTSDYKCLESVIAHDD---------AVNSIVAGFDG----LVFTGSADGTVKVWRRELQGKGTKHFFSQ---- 303 (474)
Q Consensus 243 --~i~iwd~~~~~~~~~~~~~~~---------~v~~v~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---- 303 (474)
.|..+|..+++.+..+..... ....+....+| .++.++.+|.|+++|.++++.........
T Consensus 282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~ 361 (677)
T 1kb0_A 282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA 361 (677)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence 599999999999887764211 11222222244 68889999999999988765422111000
Q ss_pred -eeecccccE------------------------EEEEEcCCCCEEEEEcC-----------------------------
Q 047728 304 -TLLKQECAV------------------------TALAISPDAAIVYCGSS----------------------------- 329 (474)
Q Consensus 304 -~~~~~~~~v------------------------~~l~~~~~~~~l~~~~~----------------------------- 329 (474)
.......++ ..++++|+..++++...
T Consensus 362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 441 (677)
T 1kb0_A 362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN 441 (677)
T ss_dssp EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence 000000111 15788998888887543
Q ss_pred --------------CCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeec-CCc
Q 047728 330 --------------DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLT-GHS 394 (474)
Q Consensus 330 --------------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-~h~ 394 (474)
.|.|..||+.+++..-....+....-..+...+.+++.++.||.+++||..+++. +..+. ++.
T Consensus 442 ~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~--lw~~~~~~~ 519 (677)
T 1kb0_A 442 TAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK--LWEAPTGTG 519 (677)
T ss_dssp CCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE--EEEEECSSC
T ss_pred cccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce--eeeeeCCCC
Confidence 2779999999887665444333222344667888999999999999999999984 34443 232
Q ss_pred cceEEEEEeeCCccccccceEEEEEecC----------------CCcEEEEEccC
Q 047728 395 GPVKCLAVEKDDESLSREKRWILYSGSL----------------DKSVKMWRVSE 433 (474)
Q Consensus 395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s~----------------Dg~i~vw~~~~ 433 (474)
....-+.+..+++. +++..+. .+.+.+|.+..
T Consensus 520 ~~~~p~~y~~~G~~-------~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 520 VVAAPSTYMVDGRQ-------YVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp CCSCCEEEEETTEE-------EEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred cccCCEEEEeCCEE-------EEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 23344566777763 4444322 46888888874
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.18 E-value=1.6e-08 Score=94.51 Aligned_cols=264 Identities=11% Similarity=0.014 Sum_probs=159.7
Q ss_pred CcEEEEEEc--CCEEEEee--CCCcEEEEeC-Cccccc-------cccCccCEEEEEec-CCEEEEEeC------CCeEE
Q 047728 111 GHIYSLAAA--GDLLYTGS--DSKNIRVWKN-QREFSG-------FKSNSGLVKAIVIS-NEKIFSGHQ------DGKIR 171 (474)
Q Consensus 111 ~~i~~~~~~--~~~l~tgs--~dg~v~vwd~-~~~~~~-------~~~h~~~V~~i~~~-~~~l~s~~~------dg~i~ 171 (474)
.....++++ |+++++.. .++.++||.. ...+.. ...|-..+..++++ .+.|+.... ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 567777765 77888753 2343555542 222221 12355789999998 355665543 57899
Q ss_pred EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEE-E---CCCcEEEE
Q 047728 172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA-S---WDKTFKVW 247 (474)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s---~dg~i~iw 247 (474)
+||+.+++.......... ...+...+..+++.+++..++.+ . .++.|.+|
T Consensus 97 ~~d~~tg~~~~~~~~~~~--------------------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~ 150 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPP--------------------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV 150 (343)
T ss_dssp EEETTTTEEEEEEECCTT--------------------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred EEECCCCeEEEEEECChh--------------------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence 999987764332221100 00133456899999865555444 4 57899999
Q ss_pred EcCCcceeeeeeecCccee-EEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728 248 RTSDYKCLESVIAHDDAVN-SIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVY 325 (474)
Q Consensus 248 d~~~~~~~~~~~~~~~~v~-~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 325 (474)
|+.+++....+..|..... ...+..++ .+.+...++.++.|. ..+..++|+|+++.|+
T Consensus 151 d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------------~~~~gia~s~dg~~ly 210 (343)
T 2qe8_A 151 DLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------------LGVNGIVLDAENEWLY 210 (343)
T ss_dssp ETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------------CCEEEEEECTTSCEEE
T ss_pred ECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------------cccceeEeccCCCEEE
Confidence 9998887666644422111 13334456 555566777766552 1367799999999888
Q ss_pred EEcCCC-cEEEeecCccc-------c-cce-eeeecc--eeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC
Q 047728 326 CGSSDG-LVNFWERELNL-------S-HGG-VLRGHK--LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH 393 (474)
Q Consensus 326 ~~~~dg-~i~v~d~~~~~-------~-~~~-~~~~~~--~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h 393 (474)
++..++ .+..++..... . ... ...++. ..-++++++|.++++...++.|.+||..+++...+... .+
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~~ 289 (343)
T 2qe8_A 211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-EK 289 (343)
T ss_dssp EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-GG
T ss_pred EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-Cc
Confidence 887766 45555432100 0 000 111222 23478888899999999999999999855553222221 23
Q ss_pred ccceEEEEEeeCCccccccceEEEEEecCCCcEEEE
Q 047728 394 SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429 (474)
Q Consensus 394 ~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw 429 (474)
...+.+++|.+++. ++++.+..+.+.+|
T Consensus 290 ~~~p~~va~~~~g~--------l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 290 LSWTDSFNFGSDGY--------LYFDCNQLHHSAPL 317 (343)
T ss_dssp GSCEEEEEECTTSC--------EEEEECCGGGSGGG
T ss_pred eecCCeeEECCCCc--------EEEEeCcccccccc
Confidence 45689999999887 67776655555443
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.18 E-value=1.1e-08 Score=94.02 Aligned_cols=221 Identities=11% Similarity=0.114 Sum_probs=134.3
Q ss_pred CccCEEEEEec--CC-EEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCe
Q 047728 147 NSGLVKAIVIS--NE-KIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAI 223 (474)
Q Consensus 147 h~~~V~~i~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 223 (474)
.........|+ ++ .+++...++.|..|+.. ++.. .+..+...+
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~---------------------------------~~~~~~~~~ 88 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD---------------------------------VLLDATAFT 88 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE---------------------------------EEEESCSCE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE---------------------------------EEeCCCCcc
Confidence 33445667776 45 56777788999999873 3211 112245568
Q ss_pred eEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeec----CcceeEEEecCCCeEEE-----eeC-------------
Q 047728 224 SSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH----DDAVNSIVAGFDGLVFT-----GSA------------- 281 (474)
Q Consensus 224 ~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~v~~v~~~~~~~l~~-----~~~------------- 281 (474)
..++++++++++++...++.|.+|+.. ++........ ...++++++.++|.+.. |..
T Consensus 89 ~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~ 167 (305)
T 3dr2_A 89 NGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA 167 (305)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred ceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence 899999999866665556789999975 5432222111 23467899999994444 332
Q ss_pred CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC------CcEEEeecCccccc-ceeee---ec
Q 047728 282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD------GLVNFWERELNLSH-GGVLR---GH 351 (474)
Q Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~-~~~~~---~~ 351 (474)
.+.|..||...+.. . ... .......++|+|+++.|+++... +.|.+|++...... ...+. ..
T Consensus 168 ~~~v~~~d~~~g~~-~------~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 168 HHSVYRLPPDGSPL-Q------RMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG 239 (305)
T ss_dssp CEEEEEECSSSCCC-E------EEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred CCeEEEEcCCCCcE-E------EEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence 24566666543321 1 111 23456789999999988877665 68999998654310 01110 01
Q ss_pred ceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC
Q 047728 352 KLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424 (474)
Q Consensus 352 ~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg 424 (474)
...-+++.++|++. ++..+ .|.+|+..... +..+.... .+.+++|.++++ .|+.++.++
T Consensus 240 ~pdgi~~d~~G~lw-v~~~~-gv~~~~~~g~~---~~~~~~~~-~~~~~~f~~d~~--------~L~it~~~~ 298 (305)
T 3dr2_A 240 LPDGFCVDRGGWLW-SSSGT-GVCVFDSDGQL---LGHIPTPG-TASNCTFDQAQQ--------RLFITGGPC 298 (305)
T ss_dssp CCCSEEECTTSCEE-ECCSS-EEEEECTTSCE---EEEEECSS-CCCEEEECTTSC--------EEEEEETTE
T ss_pred CCCeEEECCCCCEE-EecCC-cEEEECCCCCE---EEEEECCC-ceeEEEEeCCCC--------EEEEEcCCe
Confidence 11236677788844 44444 49999985432 33444333 588999998877 566666554
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.17 E-value=1.8e-09 Score=111.02 Aligned_cols=203 Identities=13% Similarity=0.043 Sum_probs=127.1
Q ss_pred ccCCeeEEEecCCCCEEEEEE-----CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCC---------
Q 047728 219 HFDAISSLSMSEDQNLLYSAS-----WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADG--------- 283 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg--------- 283 (474)
|...+..++|+||+++|+.+. .+..|++||+.+++.+... .+......++|+ |+ .|+.+..+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 556788999999999888433 3357999999999865431 111123577899 88 677776664
Q ss_pred ----cEEEEEcccCCCceeeeeeeeeec-ccccEEEEEEcCCCCEEEEEcC----CCcEEEeecCcccccceeeeeccee
Q 047728 284 ----TVKVWRRELQGKGTKHFFSQTLLK-QECAVTALAISPDAAIVYCGSS----DGLVNFWERELNLSHGGVLRGHKLA 354 (474)
Q Consensus 284 ----~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~~ 354 (474)
.|++|++.+..... ........ +...+..+.|+|++++|+.... +..|+++|+.++......+..+...
T Consensus 205 ~~~~~v~~~~lgt~~~~~--~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDD--RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp CCCCEEEEEETTSCGGGC--EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred CCCcEEEEEECCCCcccc--eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 38889876543211 11222222 3445788999999998865432 3589999987764222333333333
Q ss_pred e-EEEEecCCEEEEEe-CC---CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC--cEE
Q 047728 355 I-LCLVTAGNLVFSGS-AD---MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK--SVK 427 (474)
Q Consensus 355 v-~~~~~~~~~l~sgs-~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg--~i~ 427 (474)
. ..++++++.|+..+ .+ +.|..+|+.++.......+..|...+. .|++++.. ++++...|+ .|+
T Consensus 283 ~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~-------lv~~~~~~g~~~l~ 353 (693)
T 3iuj_A 283 DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY-------LFAEYMVDATARVE 353 (693)
T ss_dssp CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE-------EEEEEEETTEEEEE
T ss_pred eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE-------EEEEEEECCeeEEE
Confidence 2 33677776665444 33 679999998765311234455655555 88998872 344444555 578
Q ss_pred EEEccCC
Q 047728 428 MWRVSEQ 434 (474)
Q Consensus 428 vw~~~~~ 434 (474)
+|++..+
T Consensus 354 ~~d~~g~ 360 (693)
T 3iuj_A 354 QFDYEGK 360 (693)
T ss_dssp EECTTSC
T ss_pred EEECCCC
Confidence 8887643
No 224
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.16 E-value=1.2e-07 Score=89.47 Aligned_cols=248 Identities=8% Similarity=-0.003 Sum_probs=152.5
Q ss_pred ceeeeeeeeecCcEEEEEEcCCEEEEee----------CCCcEEEEeCCc--cccccccC-------ccCEEEEEec--C
Q 047728 100 NVLIGSLVREEGHIYSLAAAGDLLYTGS----------DSKNIRVWKNQR--EFSGFKSN-------SGLVKAIVIS--N 158 (474)
Q Consensus 100 ~~~~~~l~~h~~~i~~~~~~~~~l~tgs----------~dg~v~vwd~~~--~~~~~~~h-------~~~V~~i~~~--~ 158 (474)
.+++.++..-..+=..++++|++|+++. .++.|.+||... .+..+... ...-..+.++ +
T Consensus 57 ~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG 136 (373)
T 2mad_H 57 GSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN 136 (373)
T ss_pred CeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC
Confidence 3445555443444445667799888875 367899999642 22222111 1123356665 7
Q ss_pred CEEEEEeC--CCeEEEEecCCCCccee-eeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC-CE
Q 047728 159 EKIFSGHQ--DGKIRVWKVSSKDASIH-KRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ-NL 234 (474)
Q Consensus 159 ~~l~s~~~--dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~ 234 (474)
++|+++.. ++.|.++| .+++.... ... . .++.+.|++ ..
T Consensus 137 ~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~---------------------------------~---~~~~~~~~~~~~ 179 (373)
T 2mad_H 137 ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS---------------------------------P---TCYHIHPGAPST 179 (373)
T ss_pred CEEEEEecCCCCeEEEEE-CCCCEEeEEcCC---------------------------------C---ceEEEEeCCCce
Confidence 78888774 57899999 87764322 110 0 123444544 45
Q ss_pred EEEEECCCcEEEEEcCCcceeeeee-----ecCcce-eEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeee----
Q 047728 235 LYSASWDKTFKVWRTSDYKCLESVI-----AHDDAV-NSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQ---- 303 (474)
Q Consensus 235 l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~v-~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---- 303 (474)
+++.+.||.+.++|. +++.+.... ....++ ....+.+++ .++..+..+.+.+.|+.............
T Consensus 180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~ 258 (373)
T 2mad_H 180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGG 258 (373)
T ss_pred EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCc
Confidence 667778999999999 877663322 111221 223344554 44444478899999986432211000000
Q ss_pred --eeecccccEEEEEEcCCCCEEEEEcC----------CCcEEEeecCcccccceeeeecceeeEEEEecCC-EEEEEe-
Q 047728 304 --TLLKQECAVTALAISPDAAIVYCGSS----------DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGN-LVFSGS- 369 (474)
Q Consensus 304 --~~~~~~~~v~~l~~~~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sgs- 369 (474)
...........++++|+++.+++... .+.|.++|..+.+....+..++....+.++++|+ +++++.
T Consensus 259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC
Confidence 00001233455789999998888653 3579999999888776776666677789999999 788877
Q ss_pred CCCcEEEEECCCCceE
Q 047728 370 ADMSICIWRRKENEHI 385 (474)
Q Consensus 370 ~dg~i~iwd~~~~~~~ 385 (474)
.++.|.+||..+++..
T Consensus 339 ~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 339 GTEVLHIYDAGAGDQD 354 (373)
T ss_pred CCCeEEEEECCCCCEE
Confidence 5899999999998843
No 225
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.16 E-value=6e-09 Score=97.28 Aligned_cols=270 Identities=10% Similarity=0.014 Sum_probs=162.6
Q ss_pred CcceeeeeeeeecCcEEEEEEcCCEEEEee----------CCCcEEEEeCC--ccccccccC-------ccCEEEEEec-
Q 047728 98 SPNVLIGSLVREEGHIYSLAAAGDLLYTGS----------DSKNIRVWKNQ--REFSGFKSN-------SGLVKAIVIS- 157 (474)
Q Consensus 98 ~~~~~~~~l~~h~~~i~~~~~~~~~l~tgs----------~dg~v~vwd~~--~~~~~~~~h-------~~~V~~i~~~- 157 (474)
...+.++++..-..+=..++++|++|+++. .++.|.+||.. +.+..+... ...-..+.++
T Consensus 67 ~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp 146 (386)
T 3sjl_D 67 EAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP 146 (386)
T ss_dssp TTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred CCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC
Confidence 345556666544444356667788887765 36789999954 333333211 1123345665
Q ss_pred -CCEEEEEeC--CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCE
Q 047728 158 -NEKIFSGHQ--DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNL 234 (474)
Q Consensus 158 -~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 234 (474)
+++++++.. ++.|.++|+.+.+......... . ...+....+.
T Consensus 147 DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----------------------------------~-~~~~P~g~~~ 191 (386)
T 3sjl_D 147 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----------------------------------C-YHIFPTAPDT 191 (386)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----------------------------------E-EEEEEEETTE
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----------------------------------c-ceeecCCCce
Confidence 778887764 6899999999987654332110 0 1122224456
Q ss_pred EEEEECCCcEEEEEcCC-cceeeeeeec----Cccee-EEEe-cCCCeEEEeeCCCcEEEEEcccCCCceeeeee-ee--
Q 047728 235 LYSASWDKTFKVWRTSD-YKCLESVIAH----DDAVN-SIVA-GFDGLVFTGSADGTVKVWRRELQGKGTKHFFS-QT-- 304 (474)
Q Consensus 235 l~s~s~dg~i~iwd~~~-~~~~~~~~~~----~~~v~-~v~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~-- 304 (474)
+++.+.||.+.+.++.+ ++.......+ ..++. ...| .++|.++..+.+|.|.+.|+............ ..
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~ 271 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 271 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred eEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccc
Confidence 67777888888888765 4442211111 11221 1344 36776555777899999998644321100000 00
Q ss_pred ---eecccccEEEEEEcCCCCEEEEEcC----------CCcEEEeecCcccccceeeeecceeeEEEEecCC-EEEEEe-
Q 047728 305 ---LLKQECAVTALAISPDAAIVYCGSS----------DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGN-LVFSGS- 369 (474)
Q Consensus 305 ---~~~~~~~v~~l~~~~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sgs- 369 (474)
..-.......++++++++.+++... .+.|.++|+.+.+.+..+..++...-+.++++++ +|++..
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence 0001223345778999998888643 2579999999999888888888777899999986 666654
Q ss_pred CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeC
Q 047728 370 ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKD 405 (474)
Q Consensus 370 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~ 405 (474)
.++.|.++|..+++.+......+|. +.|.+++|
T Consensus 352 ~~~~VsViD~~t~k~~~~i~~~~~p---~~l~~s~d 384 (386)
T 3sjl_D 352 GDKTLYIHDAESGEELRSVNQLGHG---PQVITTAD 384 (386)
T ss_dssp TTTEEEEEETTTCCEEEEECCCCSS---CCEEEECC
T ss_pred CCCeEEEEECCCCcEEEEecCCCCC---ceeEECCc
Confidence 5899999999999854333333333 34455554
No 226
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.15 E-value=6.6e-10 Score=103.19 Aligned_cols=254 Identities=15% Similarity=0.133 Sum_probs=152.9
Q ss_pred EEEc-CCEEEEeeCCCcEEEEeCC-ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCcc
Q 047728 116 LAAA-GDLLYTGSDSKNIRVWKNQ-REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTF 192 (474)
Q Consensus 116 ~~~~-~~~l~tgs~dg~v~vwd~~-~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 192 (474)
...+ +..|+.++.++.|..||.. +....+......+.++... ++.|+.++.+ |..+|. +++.......
T Consensus 25 ~~~d~~g~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~------ 95 (330)
T 3hxj_A 25 PILAKNGTIYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDT------ 95 (330)
T ss_dssp CEECTTSCEECSSTTTTTEEECTTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC------
T ss_pred ceEccCCeEEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEEC------
Confidence 3443 5567788888888888822 2233333344456677776 6677777666 777775 4333221110
Q ss_pred ceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecC
Q 047728 193 KDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGF 272 (474)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~ 272 (474)
.........+. +..|+.++.++.|..+|.. ++...........+.++...+
T Consensus 96 --------------------------~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~ 146 (330)
T 3hxj_A 96 --------------------------KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE 146 (330)
T ss_dssp -------------------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT
T ss_pred --------------------------CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC
Confidence 01111122222 5578888889999999988 777776666666677777877
Q ss_pred CCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecc
Q 047728 273 DGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK 352 (474)
Q Consensus 273 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 352 (474)
++.++.++.++.|..+|.. +.. ..........+.++.+.+++.+++ ++ +.|..|| .++....... ...
T Consensus 147 ~g~l~vgt~~~~l~~~d~~-g~~------~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~-~~~ 214 (330)
T 3hxj_A 147 DGTIYVGSNDNYLYAINPD-GTE------KWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFY-AGY 214 (330)
T ss_dssp TSCEEEECTTSEEEEECTT-SCE------EEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEEC-CSS
T ss_pred CCEEEEEcCCCEEEEECCC-CCE------eEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEc-cCC
Confidence 8888888989999999976 332 112222344566677777777555 44 7899999 4443332221 122
Q ss_pred eeeEEEEecC-CEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728 353 LAILCLVTAG-NLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431 (474)
Q Consensus 353 ~~v~~~~~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~ 431 (474)
..+.++..+. ..|..++.++.|..+|..... +..+......+..+.+.+++. |+.++.+|.|..++.
T Consensus 215 ~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~---~~~~~~~~~~~~~~~~~~~g~---------l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 215 WTVTRPAISEDGTIYVTSLDGHLYAINPDGTE---KWRFKTGKRIESSPVIGNTDT---------IYFGSYDGHLYAINP 282 (330)
T ss_dssp CCCSCCEECTTSCEEEEETTTEEEEECTTSCE---EEEEECSSCCCSCCEECTTSC---------EEEECTTCEEEEECT
T ss_pred cceeceEECCCCeEEEEcCCCeEEEECCCCCE---eEEeeCCCCccccceEcCCCe---------EEEecCCCCEEEECC
Confidence 2333333332 266777778889888754332 233333333444555655554 777788888988885
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.14 E-value=5.9e-09 Score=107.11 Aligned_cols=239 Identities=12% Similarity=0.082 Sum_probs=146.0
Q ss_pred CccCEEEEEec--CCEEEE-----EeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeec
Q 047728 147 NSGLVKAIVIS--NEKIFS-----GHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKH 219 (474)
Q Consensus 147 h~~~V~~i~~~--~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 219 (474)
|...+..+.|+ +++|+- |+.+..|++||+++++..... + +
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~--------------------------------~ 173 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-L--------------------------------K 173 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-E--------------------------------E
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-c--------------------------------C
Confidence 55678888898 556663 223357999999998743210 0 1
Q ss_pred cCCeeEEEecCCCCEEEEEECCCc-------------EEEEEcCCcce----eeeeee-cCcceeEEEecCCC-eE-EEe
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKT-------------FKVWRTSDYKC----LESVIA-HDDAVNSIVAGFDG-LV-FTG 279 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~-------------i~iwd~~~~~~----~~~~~~-~~~~v~~v~~~~~~-~l-~~~ 279 (474)
......++|+ |++.|+.++.+.. |++|++.+... +..... |...+..+.++||+ .| ++.
T Consensus 174 ~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~ 252 (693)
T 3iuj_A 174 DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISA 252 (693)
T ss_dssp EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence 1112467899 9999998887743 99999987643 222223 34456788999999 44 333
Q ss_pred eC---CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCC---CcEEEeecCcccc-cceeeeec
Q 047728 280 SA---DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSD---GLVNFWERELNLS-HGGVLRGH 351 (474)
Q Consensus 280 ~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~d---g~i~v~d~~~~~~-~~~~~~~~ 351 (474)
.. ...|.++|+...... ...+..+....... +++++..|+.. ..+ +.|..+|+.+... ....+..|
T Consensus 253 ~~~~~~~~i~~~d~~~~~~~-----~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 326 (693)
T 3iuj_A 253 ANSTSGNRLYVKDLSQENAP-----LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE 326 (693)
T ss_dssp ESSSSCCEEEEEETTSTTCC-----CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred ccCCCCcEEEEEECCCCCCc-----eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence 32 357999998754321 12233334444444 56666655544 333 5788999887543 11233444
Q ss_pred ceeeEEEEecCCEEEEEeCCC---cEEEEECCCCceEEEEeec-CCccceEEEEEeeCCccccccceEEEEEecC---CC
Q 047728 352 KLAILCLVTAGNLVFSGSADM---SICIWRRKENEHICLSMLT-GHSGPVKCLAVEKDDESLSREKRWILYSGSL---DK 424 (474)
Q Consensus 352 ~~~v~~~~~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~---Dg 424 (474)
...++.++++++.|+....++ .|++||+.++.. ..+. ...+.+..+.+++++.. ++++.+. -+
T Consensus 327 ~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~---~~l~~p~~~~~~~~~~~~d~~~-------l~~~~ss~~tP~ 396 (693)
T 3iuj_A 327 RQQVLTVHSGSGYLFAEYMVDATARVEQFDYEGKRV---REVALPGLGSVSGFNGKHDDPA-------LYFGFENYAQPP 396 (693)
T ss_dssp CSSCEEEEEETTEEEEEEEETTEEEEEEECTTSCEE---EEECCSSSSEEEECCCCTTCSC-------EEEEEECSSSCC
T ss_pred CCCEEEEEEECCEEEEEEEECCeeEEEEEECCCCee---EEeecCCCceEEeeecCCCCCE-------EEEEecCCCCCC
Confidence 444448899998887766544 688999886542 2222 24456777778777763 3333332 27
Q ss_pred cEEEEEccCCC
Q 047728 425 SVKMWRVSEQA 435 (474)
Q Consensus 425 ~i~vw~~~~~~ 435 (474)
.|..||+.+++
T Consensus 397 ~l~~~d~~~g~ 407 (693)
T 3iuj_A 397 TLYRFEPKSGA 407 (693)
T ss_dssp EEEEECTTTCC
T ss_pred EEEEEECCCCe
Confidence 88899887653
No 228
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.14 E-value=4.9e-08 Score=90.46 Aligned_cols=219 Identities=11% Similarity=0.025 Sum_probs=129.2
Q ss_pred EEEc-CCEEEEeeCCCcEEEEeCCcc-ccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCcc
Q 047728 116 LAAA-GDLLYTGSDSKNIRVWKNQRE-FSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTF 192 (474)
Q Consensus 116 ~~~~-~~~l~tgs~dg~v~vwd~~~~-~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 192 (474)
+.++ +.+++++..++.|.+||.... ...+. ....+.+++++ +..++.+..++ |.+||..+++.........
T Consensus 56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~~~g-l~~~d~~~g~~~~~~~~~~---- 129 (326)
T 2ghs_A 56 FDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIASDDG-LFLRDTATGVLTLHAELES---- 129 (326)
T ss_dssp EETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEETTE-EEEEETTTCCEEEEECSST----
T ss_pred EeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEECCC-EEEEECCCCcEEEEeeCCC----
Confidence 3444 457777777889999986532 22222 34678999887 44555555554 8999987765321110000
Q ss_pred ceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC------CCcEEEEEcCCcceeeeeeecCccee
Q 047728 193 KDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW------DKTFKVWRTSDYKCLESVIAHDDAVN 266 (474)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~v~ 266 (474)
......+.+++++|+|+++++... .+.|..++ +++.. .+..+.....
T Consensus 130 ------------------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~ 182 (326)
T 2ghs_A 130 ------------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPN 182 (326)
T ss_dssp ------------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEE
T ss_pred ------------------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccC
Confidence 001235789999999987665442 24566666 44433 3333344567
Q ss_pred EEEecCCC-eE-EEeeCCCcEEEEEcc--cC-CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc
Q 047728 267 SIVAGFDG-LV-FTGSADGTVKVWRRE--LQ-GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN 341 (474)
Q Consensus 267 ~v~~~~~~-~l-~~~~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~ 341 (474)
.++|++++ .+ ++.+.++.|.+||+. .+ ...... ...........+..+++++++++.++...++.|.+||.. +
T Consensus 183 ~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~-~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g 260 (326)
T 2ghs_A 183 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE-VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G 260 (326)
T ss_dssp EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE-EEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C
T ss_pred CeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCce-EEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-C
Confidence 89999999 44 445567899999985 22 111111 111122234557889999999988777677889999984 3
Q ss_pred cccceeeeecceee--EEEE-ecCCEEEEEeC
Q 047728 342 LSHGGVLRGHKLAI--LCLV-TAGNLVFSGSA 370 (474)
Q Consensus 342 ~~~~~~~~~~~~~v--~~~~-~~~~~l~sgs~ 370 (474)
... ..+..+...+ +++. ++++.|+.++.
T Consensus 261 ~~~-~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 261 NHI-ARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CEE-EEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CEE-EEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 332 2222233234 4444 55566655543
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.11 E-value=5.6e-09 Score=97.57 Aligned_cols=255 Identities=6% Similarity=-0.035 Sum_probs=155.9
Q ss_pred cEEEEeCC--ccccccccCccCEEEEEec--CCEEEEEe----------CCCeEEEEecCCCCcceeeeecccCccceee
Q 047728 131 NIRVWKNQ--REFSGFKSNSGLVKAIVIS--NEKIFSGH----------QDGKIRVWKVSSKDASIHKRVGTLPTFKDFI 196 (474)
Q Consensus 131 ~v~vwd~~--~~~~~~~~h~~~V~~i~~~--~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 196 (474)
+|.+.|.. +.+..+.....+ .+.++ +++++++. .++.|.+||..+.+......+...+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~----- 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR----- 119 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS-----
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc-----
Confidence 67788843 455555444445 57776 66777775 47889999999988765443320000
Q ss_pred eeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC--CCcEEE--EEcCCcceeeeeeecCcceeEEEecC
Q 047728 197 KCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW--DKTFKV--WRTSDYKCLESVIAHDDAVNSIVAGF 272 (474)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~v~~~~ 272 (474)
.. .......++++||+++++++.. +..|.+ +|+.+ +..+... +. +.+.|
T Consensus 120 ------------------~~--~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p 172 (368)
T 1mda_H 120 ------------------FS--VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHP 172 (368)
T ss_dssp ------------------CC--BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEE
T ss_pred ------------------cc--cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEcc
Confidence 00 0123457899999999999875 467888 88876 4444321 11 12334
Q ss_pred CC--eEEEeeCCCcEEEEEccc----CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccc-cc
Q 047728 273 DG--LVFTGSADGTVKVWRREL----QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLS-HG 345 (474)
Q Consensus 273 ~~--~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~ 345 (474)
++ .+++.+.||.+.+.|+.. ..+.... ..........+. . .+++..++..+. +.+.+.|...... ..
T Consensus 173 ~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~-~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~ 246 (368)
T 1mda_H 173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ-CTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMK 246 (368)
T ss_dssp EETTEEECCCCTTSCEEEECCSSCCCCEECCCC-SCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEE
T ss_pred CCCeEEEEEcCCCCEEEEECccccccCCeEEEE-eeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEE
Confidence 44 666777889988888865 1110000 000111122333 3 566666665666 8999999864321 10
Q ss_pred e-e-----------eeecceeeEEEEecCCEEEEEeC---------CCcEEEEECCCCceEEEEeecCCccceEEEEEee
Q 047728 346 G-V-----------LRGHKLAILCLVTAGNLVFSGSA---------DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEK 404 (474)
Q Consensus 346 ~-~-----------~~~~~~~v~~~~~~~~~l~sgs~---------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~ 404 (474)
. + ........+.++++++.++.+.. ++.+.++|+.+.+. +..+.... ...+++|+|
T Consensus 247 ~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v--v~~i~vg~-~p~gi~~s~ 323 (368)
T 1mda_H 247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT--SGPISNGH-DSDAIIAAQ 323 (368)
T ss_dssp CCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE--EECCEEEE-EECEEEECC
T ss_pred EEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE--EEEEECCC-CcceEEECC
Confidence 1 0 11222233679999998887643 23566999999874 44444332 588999999
Q ss_pred CCccccccceEEEEEec-CCCcEEEEEccCCC
Q 047728 405 DDESLSREKRWILYSGS-LDKSVKMWRVSEQA 435 (474)
Q Consensus 405 ~~~~~~~~~~~~l~s~s-~Dg~i~vw~~~~~~ 435 (474)
|++. ++++.. .++.|.++|+.+.+
T Consensus 324 Dg~~-------l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 324 DGAS-------DNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SSSC-------EEEEEETTTTEEEEEESSSCE
T ss_pred CCCE-------EEEEccCCCCeEEEEECCCCc
Confidence 9874 566766 69999999999873
No 230
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.11 E-value=5.2e-11 Score=112.58 Aligned_cols=185 Identities=11% Similarity=0.107 Sum_probs=103.6
Q ss_pred EecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCE
Q 047728 155 VISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNL 234 (474)
Q Consensus 155 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~ 234 (474)
+..++.+++++.||.|+.||..+++....... ..+.+..+..++..
T Consensus 6 ~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----------------------------------~~~~s~p~~~~g~~ 51 (369)
T 2hz6_A 6 TLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE----------------------------------DPVLQVPTHVEEPA 51 (369)
T ss_dssp --CTTEEEEEETTSEEEEEETTTCCEEEEEEC----------------------------------CCSCCCC-----CC
T ss_pred eeeCCEEEEEcCCCEEEEEECCCCCEEEEecC----------------------------------CCceecceEcCCCE
Confidence 34588999999999999999999887654332 12333334456777
Q ss_pred EEEEECCCcEEEEEcCCcceeeeeeecCc-ceeE-EEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccE
Q 047728 235 LYSASWDKTFKVWRTSDYKCLESVIAHDD-AVNS-IVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAV 312 (474)
Q Consensus 235 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~v~~-v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 312 (474)
+++++.|+.|+.||.++++.+..+..+.. .+.+ ..+..++.+++++.++.|+.||.++++.... ...+.
T Consensus 52 ~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~------~~~~~--- 122 (369)
T 2hz6_A 52 FLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQT------LSSAF--- 122 (369)
T ss_dssp EEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC---------------------
T ss_pred EEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEE------ecCCC---
Confidence 88788999999999999988766543321 1111 1112345788899999999999987654211 11111
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecC---CEEEEEeCCCcEEEEECCCCce
Q 047728 313 TALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAG---NLVFSGSADMSICIWRRKENEH 384 (474)
Q Consensus 313 ~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~sgs~dg~i~iwd~~~~~~ 384 (474)
...++|++..+++++.|+.|+.||.+++......... ......+..+. ..+++++.||.|+.||..+++.
T Consensus 123 -~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 123 -ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF-DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp -----------EEEEEEEEEEECCCSSSSSCCCEEEEE-EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred -cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc-cccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 2345668889999999999999999988655433211 11111222221 5678889999999999998874
No 231
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.00 E-value=2.5e-08 Score=94.75 Aligned_cols=250 Identities=12% Similarity=0.040 Sum_probs=147.9
Q ss_pred CCEEEEEeCC-----CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCC
Q 047728 158 NEKIFSGHQD-----GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQ 232 (474)
Q Consensus 158 ~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~ 232 (474)
++.+++.... +.|.++|..+.+.......+ ..+ .++++||+
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG--------------------------------~~P--gia~SpDg 129 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG--------------------------------FLP--HPVAAEDG 129 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC--------------------------------SSC--EEEECTTS
T ss_pred CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC--------------------------------CCC--ceEECCCC
Confidence 5556555542 68999999988765444332 123 79999999
Q ss_pred CEEEEEE----------CCCcEEEEEcCCcceeeeeeec-------CcceeEEEecCCC-eEEEeeC--CCcEEEEEccc
Q 047728 233 NLLYSAS----------WDKTFKVWRTSDYKCLESVIAH-------DDAVNSIVAGFDG-LVFTGSA--DGTVKVWRREL 292 (474)
Q Consensus 233 ~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~v~~~~~~-~l~~~~~--dg~i~iwd~~~ 292 (474)
++|+++. .++.|.++|..+++.+..+... ......+.++||+ +++++.. ++.|.+.|+..
T Consensus 130 k~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t 209 (426)
T 3c75_H 130 SFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG 209 (426)
T ss_dssp SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred CEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC
Confidence 9998886 3678999999999998887642 2345678999999 6666653 67899999886
Q ss_pred CCCceeeeeeeeeecccccEEEEEEcCC-CCEEEEEcCCCcEEEeecCcccccce---eeeecc---eeeEEEEecCCEE
Q 047728 293 QGKGTKHFFSQTLLKQECAVTALAISPD-AAIVYCGSSDGLVNFWERELNLSHGG---VLRGHK---LAILCLVTAGNLV 365 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~---~~~~~~---~~v~~~~~~~~~l 365 (474)
.+.. ..+..... ....|+ ...+++.+.||.+.+.+...+..... .+.... .....+.+++..+
T Consensus 210 ~kvv------~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~ 279 (426)
T 3c75_H 210 KTFD------RMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRL 279 (426)
T ss_dssp TEEE------EEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEE
T ss_pred CeEE------EEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEE
Confidence 5431 11111110 122232 24444455566666666533322110 000000 1123456777777
Q ss_pred EEEeCCCcEEEEECCCCceEEEEeecC----------CccceEEEEEeeCCccccccceEEEEEec----------CCCc
Q 047728 366 FSGSADMSICIWRRKENEHICLSMLTG----------HSGPVKCLAVEKDDESLSREKRWILYSGS----------LDKS 425 (474)
Q Consensus 366 ~sgs~dg~i~iwd~~~~~~~~~~~~~~----------h~~~v~~l~~~~~~~~~~~~~~~~l~s~s----------~Dg~ 425 (474)
+..+..+.|.+.|........+..+.- .......+++++++. .++... .++.
T Consensus 280 ~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~--------rlyVa~~~~~~gthk~~s~~ 351 (426)
T 3c75_H 280 VWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD--------RIYLLVDQRDEWKHKAASRF 351 (426)
T ss_dssp EEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT--------EEEEEEEECCTTCTTSCEEE
T ss_pred EEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC--------EEEEEecccccccccCCCCE
Confidence 777788999999997654322211110 011222368999977 344432 1357
Q ss_pred EEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCc-eee
Q 047728 426 VKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGR-ICQ 471 (474)
Q Consensus 426 i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~-~l~ 471 (474)
|.+.|+.+.+. ...+..- ....++ +|+|||+ ++.
T Consensus 352 VsVID~~T~kv-------v~~I~vg-~~P~gi----a~spDg~~~ly 386 (426)
T 3c75_H 352 VVVLNAETGER-------INKIELG-HEIDSI----NVSQDAEPLLY 386 (426)
T ss_dssp EEEEETTTCCE-------EEEEEEE-EEECEE----EECCSSSCEEE
T ss_pred EEEEECCCCeE-------EEEEECC-CCcCeE----EEccCCCEEEE
Confidence 99999988732 2333211 124444 8899998 554
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.99 E-value=2.1e-10 Score=108.33 Aligned_cols=184 Identities=14% Similarity=0.111 Sum_probs=100.9
Q ss_pred CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeeeeccc
Q 047728 231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQE 309 (474)
Q Consensus 231 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 309 (474)
++..+++++.|+.|+.||..+++.+..+.. +.+.+..+..++ .+++++.||.|+.||.++++...............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999999988876 455555555566 77777899999999987655422111100000001
Q ss_pred ccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 047728 310 CAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSM 389 (474)
Q Consensus 310 ~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 389 (474)
.++ +. .+..+++++.++.|+.||.++++......... ...+++++..+++++.|+.|+.||.++++......
T Consensus 86 sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 86 SPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp CSC----C------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred Cce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 111 11 34567778889999999999887654332221 23445688899999999999999999887432212
Q ss_pred ecCCccceEEEEEeeCC---ccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 390 LTGHSGPVKCLAVEKDD---ESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 390 ~~~h~~~v~~l~~~~~~---~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
... ....++..+. . .++.++.||.|..||..+++.
T Consensus 158 ~~~----~~~~~~~~~~~~~~--------~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 158 YFD----YAASLPEDDVDYKM--------SHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp EEE----ECCBCCCCCTTCCC--------CEEEEETSCEEEEECTTTCCE
T ss_pred ccc----ccCccccCCccccc--------eEEEECCCCEEEEEECCCCcE
Confidence 111 1122233321 2 466788899999999988753
No 233
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.98 E-value=8.8e-09 Score=96.30 Aligned_cols=233 Identities=13% Similarity=0.124 Sum_probs=135.5
Q ss_pred CCeeEEEecCCCCEEEEEE--CCCcEEEEEcCCcceeeee-------eecCcceeEEEecCCCeEEEeeC------CCcE
Q 047728 221 DAISSLSMSEDQNLLYSAS--WDKTFKVWRTSDYKCLESV-------IAHDDAVNSIVAGFDGLVFTGSA------DGTV 285 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~v~~~~~~~l~~~~~------dg~i 285 (474)
..+..++++++++++++.. .++.++||.+.+++.. .+ ..+-..+..+++.+++.|+.... +..|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5789999999999888864 2342455554455432 22 12446789999999995554442 5789
Q ss_pred EEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-c---CCCcEEEeecCcccccceeeeec----------
Q 047728 286 KVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-S---SDGLVNFWERELNLSHGGVLRGH---------- 351 (474)
Q Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~---~dg~i~v~d~~~~~~~~~~~~~~---------- 351 (474)
.+||+.++..............+...+..+++++++..++++ . .++.|.+||+.++... ....+|
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~-r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA-RVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE-EECTTCTTTSCCSCCC
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE-EEecCCCcccccccce
Confidence 999987543111110000111223456899999865555444 4 5788999998755321 111110
Q ss_pred ---------------------ceeeEEEEecCCEEEEEeCCC-cEEEEECC---CCce---EE--EEeecCCccceEEEE
Q 047728 352 ---------------------KLAILCLVTAGNLVFSGSADM-SICIWRRK---ENEH---IC--LSMLTGHSGPVKCLA 401 (474)
Q Consensus 352 ---------------------~~~v~~~~~~~~~l~sgs~dg-~i~iwd~~---~~~~---~~--~~~~~~h~~~v~~l~ 401 (474)
...-++++++++.|+.+..++ .|..++.. .+.. .. .....++.+....++
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia 254 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGIS 254 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEE
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEE
Confidence 112367788898888887666 44444431 1100 00 001113344567899
Q ss_pred EeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeecc
Q 047728 402 VEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 402 ~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~~ 473 (474)
+++++. ++++...++.|.+|+..+++.. ..... .+...+.++ +|++||++.++.
T Consensus 255 ~d~~G~--------l~va~~~~~~V~~~d~~~G~~~-----~~~~~-~~~~~p~~v----a~~~~g~l~v~~ 308 (343)
T 2qe8_A 255 IDKDHN--------IYVGDLAHSAIGVITSADRAYK-----LLVTD-EKLSWTDSF----NFGSDGYLYFDC 308 (343)
T ss_dssp ECTTCC--------EEEEEGGGTEEEEEETTTTEEE-----EEEEC-GGGSCEEEE----EECTTSCEEEEE
T ss_pred ECCCCC--------EEEEccCCCeEEEEECCCCCEE-----EEEEC-CceecCCee----EECCCCcEEEEe
Confidence 999988 8888888999999998444210 10100 112234555 667788887764
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.97 E-value=1.8e-07 Score=87.94 Aligned_cols=192 Identities=11% Similarity=0.116 Sum_probs=122.1
Q ss_pred CCCCEEEE-EECCCcEEEEEcCCc----ceeeeee------e-cCcceeEEEecCCCeEEEeeCC------CcEEEEEcc
Q 047728 230 EDQNLLYS-ASWDKTFKVWRTSDY----KCLESVI------A-HDDAVNSIVAGFDGLVFTGSAD------GTVKVWRRE 291 (474)
Q Consensus 230 ~~~~~l~s-~s~dg~i~iwd~~~~----~~~~~~~------~-~~~~v~~v~~~~~~~l~~~~~d------g~i~iwd~~ 291 (474)
.+.++|+. +..+++|.++|+.+. +...++. . .......+.+.|++.++++..+ |.|.++|.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence 67777765 457789999999755 5555552 1 1124456788899955555554 789999987
Q ss_pred cCCCceeeeeeeeeec--c-cccEEEEEEcCCCCEEEEEc-------------------CCCcEEEeecCcccccceeee
Q 047728 292 LQGKGTKHFFSQTLLK--Q-ECAVTALAISPDAAIVYCGS-------------------SDGLVNFWERELNLSHGGVLR 349 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~--~-~~~v~~l~~~~~~~~l~~~~-------------------~dg~i~v~d~~~~~~~~~~~~ 349 (474)
+... ...... . ...-..+.|+|+++.+++.. .+.+|.+||+.+.+....+..
T Consensus 173 T~~v------~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 173 SFEP------LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp TCCE------EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred CCeE------EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 5543 222221 1 12234588899999888874 368999999987654443333
Q ss_pred ecc--ee-eE--EEEecCCEEEEEeC------CCcEEEEECCCCceEEEEee--cCC----------------ccceEEE
Q 047728 350 GHK--LA-IL--CLVTAGNLVFSGSA------DMSICIWRRKENEHICLSML--TGH----------------SGPVKCL 400 (474)
Q Consensus 350 ~~~--~~-v~--~~~~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~--~~h----------------~~~v~~l 400 (474)
+.. .+ -+ .+++++++++++++ +++|.+|..+.++......+ ... ......|
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 211 11 12 23778998888774 56888877765543322221 110 1347889
Q ss_pred EEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 401 AVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
.+++|++. +.++.-..+.|.+||+...
T Consensus 327 ~lS~DGrf-------LYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 327 DISLDDKF-------LYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp EECTTSCE-------EEEEETTTTEEEEEECSST
T ss_pred EECCCCCE-------EEEEeCCCCEEEEEEecCC
Confidence 99999983 3444455789999999744
No 235
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.88 E-value=2.7e-06 Score=76.16 Aligned_cols=220 Identities=10% Similarity=0.005 Sum_probs=129.0
Q ss_pred CeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCcee
Q 047728 222 AISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTK 298 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~ 298 (474)
.+..++|++++..|+.+. .++.|..++.........+.........+++.+++ .+++-...+.|.++++..... .
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--~ 114 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--R 114 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--E
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--E
Confidence 467999999766666554 56889999987654433332222467899999864 444555678899998863221 1
Q ss_pred eeeeeeeecccccEEEEEEcCCCCEEEEEcC---CCcEEEeecCcccccceeee--ecceeeEEEEecCCEEEEEe-CCC
Q 047728 299 HFFSQTLLKQECAVTALAISPDAAIVYCGSS---DGLVNFWERELNLSHGGVLR--GHKLAILCLVTAGNLVFSGS-ADM 372 (474)
Q Consensus 299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~sgs-~dg 372 (474)
............++++|++..|+.+.. .+.|..++++..... .... .....-++++++++.|+.+. ..+
T Consensus 115 ----~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~-~~~~~~~~~P~gia~d~~~~~lyv~d~~~~ 189 (267)
T 1npe_A 115 ----VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQDNLGLPNGLTFDAFSSQLCWVDAGTH 189 (267)
T ss_dssp ----EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred ----EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE-EEEECCCCCCcEEEEcCCCCEEEEEECCCC
Confidence 111112246789999997666665554 368888887643221 1111 12233467777776665554 568
Q ss_pred cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCC-C
Q 047728 373 SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGH-G 451 (474)
Q Consensus 373 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~-~ 451 (474)
.|.++|....... ...... .....+++. .+. ++++....+.|.+++..+++ ....+... .
T Consensus 190 ~I~~~~~~g~~~~--~~~~~~-~~P~gi~~d-~~~--------lyva~~~~~~v~~~d~~~g~-------~~~~i~~g~~ 250 (267)
T 1npe_A 190 RAECLNPAQPGRR--KVLEGL-QYPFAVTSY-GKN--------LYYTDWKTNSVIAMDLAISK-------EMDTFHPHKQ 250 (267)
T ss_dssp EEEEEETTEEEEE--EEEECC-CSEEEEEEE-TTE--------EEEEETTTTEEEEEETTTTE-------EEEEECCSSC
T ss_pred EEEEEecCCCceE--EEecCC-CCceEEEEe-CCE--------EEEEECCCCeEEEEeCCCCC-------ceEEEccccc
Confidence 9999999764422 222222 234566654 333 55566667899999987763 22333222 2
Q ss_pred CCCCccccCCCCCcCC
Q 047728 452 VAPNSLPYAPSFSSQG 467 (474)
Q Consensus 452 ~~v~~l~~~p~~s~Dg 467 (474)
..+..+++.|.-.|++
T Consensus 251 ~~p~gi~~~~~~~~~~ 266 (267)
T 1npe_A 251 TRLYGITIALSQCPQG 266 (267)
T ss_dssp CCCCCEEEECSCC---
T ss_pred cccceeeecCccCCCC
Confidence 2366776665544543
No 236
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.86 E-value=1.7e-05 Score=82.87 Aligned_cols=284 Identities=14% Similarity=0.178 Sum_probs=169.7
Q ss_pred EEEEEEc-CCEEEEeeCCCcEEEEeCCc-ccccc--ccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeec
Q 047728 113 IYSLAAA-GDLLYTGSDSKNIRVWKNQR-EFSGF--KSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVG 187 (474)
Q Consensus 113 i~~~~~~-~~~l~tgs~dg~v~vwd~~~-~~~~~--~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 187 (474)
|.++..+ ...|..|+.++-|..|+... .+..+ ..+...|.++..+ .+.|..|+.++-|.+|+..+++........
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~ 254 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSP 254 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCT
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCC
Confidence 7777765 44566677655588888432 22222 1234568888876 566777775544888987765432111000
Q ss_pred ccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee-------e
Q 047728 188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI-------A 260 (474)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~ 260 (474)
..+ . .-....|.++...+++.+. .|+.+ -|.+||..+++...... .
T Consensus 255 ~~~-----------------------~--~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l 307 (795)
T 4a2l_A 255 SNP-----------------------K--SISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSL 307 (795)
T ss_dssp TCT-----------------------T--SCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSC
T ss_pred CCc-----------------------c--ccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCC
Confidence 000 0 0034568999988877654 45555 58999987765433221 1
Q ss_pred cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc
Q 047728 261 HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL 340 (474)
Q Consensus 261 ~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~ 340 (474)
....|.++...++|.|..|+.++-|..|+.....-...........-....|.++..++++.+.+ |+.++-|..||..+
T Consensus 308 ~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~ 386 (795)
T 4a2l_A 308 SQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPIT 386 (795)
T ss_dssp SSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSCEEEECTTT
T ss_pred CCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCC
Confidence 23579999999999888899988999998764321100000000011245699999998887554 77777799999875
Q ss_pred ccccceeee-------ecceeeEEEEe--cCCEEEEEeCCCcEEEEECCCCceEEEEeec--CCccceEEEEEeeCCccc
Q 047728 341 NLSHGGVLR-------GHKLAILCLVT--AGNLVFSGSADMSICIWRRKENEHICLSMLT--GHSGPVKCLAVEKDDESL 409 (474)
Q Consensus 341 ~~~~~~~~~-------~~~~~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~ 409 (474)
+........ -....|.++.. ++++|..|+.++-|.+||..+++........ .....|.++...+++.
T Consensus 387 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-- 464 (795)
T 4a2l_A 387 QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-- 464 (795)
T ss_dssp CCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC--
T ss_pred CcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC--
Confidence 532111100 01234566655 4555788888888999999887633211100 2345789998888876
Q ss_pred cccceEEEEEecCCCcEEEEEccCC
Q 047728 410 SREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 410 ~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+.+ |+.+ -|.+|+..++
T Consensus 465 ------lwi-gt~~-Gl~~~~~~~~ 481 (795)
T 4a2l_A 465 ------LWL-GTLS-ALVRFNPEQR 481 (795)
T ss_dssp ------EEE-EESS-CEEEEETTTT
T ss_pred ------EEE-EecC-ceeEEeCCCC
Confidence 444 4444 4888887654
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.84 E-value=1.3e-07 Score=92.19 Aligned_cols=253 Identities=8% Similarity=0.046 Sum_probs=160.4
Q ss_pred EEEEe-----cCCEEEEEeC-CCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728 152 KAIVI-----SNEKIFSGHQ-DGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS 225 (474)
Q Consensus 152 ~~i~~-----~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 225 (474)
..+.+ ++++++.... ++.|.+.|+++.+......+. .......
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-------------------------------~g~~phg 138 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIP-------------------------------NAKGIHG 138 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECS-------------------------------SCCSEEE
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCC-------------------------------CCCCCcc
Confidence 45555 3566666554 557999999988754422211 2234667
Q ss_pred EEe-c-CCCCEEEEEE------------------CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCC-
Q 047728 226 LSM-S-EDQNLLYSAS------------------WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADG- 283 (474)
Q Consensus 226 l~~-~-~~~~~l~s~s------------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg- 283 (474)
+++ . |+++++++++ .++.+.++|..+.+.+.++.... ....++++|++ ++++.+.+.
T Consensus 139 ~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se 217 (595)
T 1fwx_A 139 LRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSE 217 (595)
T ss_dssp EEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTT
T ss_pred eeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcc
Confidence 777 4 8899998885 34579999999999888887544 45778899999 666666543
Q ss_pred --------------cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc--ccc-cce
Q 047728 284 --------------TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL--NLS-HGG 346 (474)
Q Consensus 284 --------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~--~~~-~~~ 346 (474)
.|.++|..... .+.++|+.... +.|.+.|.++ +.. ...
T Consensus 218 ~~~~i~~~~~~~~d~v~V~~~~~~~---------------------~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~ 272 (595)
T 1fwx_A 218 KGMTLPEMTAAEMDHIVVFNIAEIE---------------------KAIAAGDYQEL----NGVKVVDGRKEASSLFTRY 272 (595)
T ss_dssp CCSSHHHHTCCSEEEEEEEEHHHHH---------------------HHHHHTCSEEE----TTEEEEECSGGGCCSSEEE
T ss_pred cCcchhhccccccceEEEeecccee---------------------EeccCCCeeEE----CcEEEEeCcccCCceeEEE
Confidence 24444432110 01223443333 5599999987 433 334
Q ss_pred eeeecceeeEEEEecCCEEEEEe-CCCcEEEEECCCCce----------EEEEeecCCccceEEEEEeeCCccccccceE
Q 047728 347 VLRGHKLAILCLVTAGNLVFSGS-ADMSICIWRRKENEH----------ICLSMLTGHSGPVKCLAVEKDDESLSREKRW 415 (474)
Q Consensus 347 ~~~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 415 (474)
+..+.....+.++|||+++++++ .+.+|.++|+.+.+. .....+. -......++|++++.
T Consensus 273 Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG~-------- 343 (595)
T 1fwx_A 273 IPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGN-------- 343 (595)
T ss_dssp EEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTSE--------
T ss_pred EecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCCe--------
Confidence 44555666789999999877766 678999999986421 1123332 224578899999995
Q ss_pred EEEEecCCCcEEEEEccCCC------CCCCCCcccccccCCCCCC-CccccCCCCCcCCceeecc
Q 047728 416 ILYSGSLDKSVKMWRVSEQA------PPLVSTTQQHPLEGHGVAP-NSLPYAPSFSSQGRICQKR 473 (474)
Q Consensus 416 ~l~s~s~Dg~i~vw~~~~~~------~~~~~~~~~~~~~~~~~~v-~~l~~~p~~s~Dg~~l~~~ 473 (474)
..++.-.|+.|.+|++.... ... .....+..|-.+- ......-+++|||+.|.+.
T Consensus 344 aY~t~~ldsqV~kwdi~~a~~~~~g~~~~---~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~ 405 (595)
T 1fwx_A 344 AYTSLFLDSQVVKWNIEDAIRAYAGEKVD---PIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL 405 (595)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHHTCSCC---CEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred EEEEEecCCcEEEEEhhHhhhhhcccccc---eeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence 78888899999999998721 110 2222333222110 1222333789999998753
No 238
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.83 E-value=1e-05 Score=84.49 Aligned_cols=280 Identities=12% Similarity=0.162 Sum_probs=168.7
Q ss_pred CcEEEEEEc-CCEEEEeeCCCcEEEEeCCc-ccccccc-------CccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCc
Q 047728 111 GHIYSLAAA-GDLLYTGSDSKNIRVWKNQR-EFSGFKS-------NSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDA 180 (474)
Q Consensus 111 ~~i~~~~~~-~~~l~tgs~dg~v~vwd~~~-~~~~~~~-------h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~ 180 (474)
..|.++..+ ...|..|+.++-|..|+... .+..+.. ....|.++..+ .+.|..|+.++-|..|+..++..
T Consensus 310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~ 389 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF 389 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE
T ss_pred CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE
Confidence 468888887 44577788777788887432 2222211 24569999887 55788888887799998876543
Q ss_pred ceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee-
Q 047728 181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI- 259 (474)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~- 259 (474)
.........+ . ..-....|.++...+++.+|..|+.++-|..||..+++......
T Consensus 390 ~~~~~~~~~~-----------------------~-~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~ 445 (795)
T 4a2l_A 390 TSYTLQEDES-----------------------A-RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR 445 (795)
T ss_dssp EEECCC------------------------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT
T ss_pred EEEecCCCCc-----------------------c-cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC
Confidence 2111000000 0 00024578999988888757778887779999988766433211
Q ss_pred ---ecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeee---eecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728 260 ---AHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQT---LLKQECAVTALAISPDAAIVYCGSSDGLV 333 (474)
Q Consensus 260 ---~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 333 (474)
.....|.++...+++.|..|+. +-|.+||...... . ..... .......|.++..++++.+.+... +-|
T Consensus 446 ~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~--~-~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl 519 (795)
T 4a2l_A 446 NSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSF--T-TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGL 519 (795)
T ss_dssp TSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEE--E-ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCE
T ss_pred CCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeE--E-EccccccccccCCceEEEEEECCCCCEEEEeC--Cce
Confidence 1345789999888887777776 4588888753211 0 00000 011235789999999888766544 458
Q ss_pred EEeecCcccccceee------eecceeeEEEEec--CCEEEEEeCCCcEEEEECCCCceEEEEeecCC-ccceEEEEEee
Q 047728 334 NFWERELNLSHGGVL------RGHKLAILCLVTA--GNLVFSGSADMSICIWRRKENEHICLSMLTGH-SGPVKCLAVEK 404 (474)
Q Consensus 334 ~v~d~~~~~~~~~~~------~~~~~~v~~~~~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~~~~ 404 (474)
..||..+... ... ......+.++..+ |. |..|+.. -|..||..+.+........+- ...|.++...+
T Consensus 520 ~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~ 595 (795)
T 4a2l_A 520 SVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGI-IWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDS 595 (795)
T ss_dssp EEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECT
T ss_pred EEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCC-EEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECC
Confidence 8888765432 111 1123356666653 55 4445544 688899877653321111121 34688888888
Q ss_pred CCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 405 DDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 405 ~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
++. +.+++ .. -|..|+..+.
T Consensus 596 ~g~--------lWi~t-~~-Gl~~~~~~~~ 615 (795)
T 4a2l_A 596 FGR--------LWLST-NR-GISCFNPETE 615 (795)
T ss_dssp TSC--------EEEEE-TT-EEEEEETTTT
T ss_pred CCC--------EEEEc-CC-ceEEEcCCCC
Confidence 887 44444 44 4667776543
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.80 E-value=1.1e-05 Score=72.07 Aligned_cols=217 Identities=6% Similarity=0.007 Sum_probs=130.2
Q ss_pred cCEEEEEec--CCEEEEE-eCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728 149 GLVKAIVIS--NEKIFSG-HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS 225 (474)
Q Consensus 149 ~~V~~i~~~--~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 225 (474)
.....++++ ++.|+.+ ..++.|.+++.+........ .........
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~--------------------------------~~~~~~p~~ 83 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII--------------------------------RQDLGSPEG 83 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE--------------------------------CTTCCCEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE--------------------------------ECCCCCccE
Confidence 346788886 4555544 45678999998765321100 001235678
Q ss_pred EEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEecCC-CeEEEeeC---CCcEEEEEcccCCCceeee
Q 047728 226 LSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVFTGSA---DGTVKVWRRELQGKGTKHF 300 (474)
Q Consensus 226 l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~~~~~---dg~i~iwd~~~~~~~~~~~ 300 (474)
+++.+++..|+.+. ..+.|.++++..................+++.++ +.|+.+.. .+.|..+++..... .
T Consensus 84 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--~-- 159 (267)
T 1npe_A 84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--R-- 159 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--E--
T ss_pred EEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc--E--
Confidence 99999766666554 5678999998643322222222245789999995 55555543 36788888753221 1
Q ss_pred eeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEe-CCCcEEEEE
Q 047728 301 FSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS-ADMSICIWR 378 (474)
Q Consensus 301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd 378 (474)
............+++++++..|+.+ ...+.|.++|....... ...... .....+..++..|+.+. ..+.|..+|
T Consensus 160 --~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~~-~~P~gi~~d~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 160 --ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-KVLEGL-QYPFAVTSYGKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp --EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-EEEECC-CSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred --EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE-EEecCC-CCceEEEEeCCEEEEEECCCCeEEEEe
Confidence 1111223467899999987666554 45678999998754322 222211 12234455666666665 568999999
Q ss_pred CCCCceEEEEeecCCc-cceEEEEEeeCCc
Q 047728 379 RKENEHICLSMLTGHS-GPVKCLAVEKDDE 407 (474)
Q Consensus 379 ~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~ 407 (474)
..+++. +..+.... .....+++.|++.
T Consensus 236 ~~~g~~--~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 236 LAISKE--MDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTTEE--EEEECCSSCCCCCCEEEECSCC
T ss_pred CCCCCc--eEEEccccccccceeeecCccC
Confidence 988773 34443322 2467888888764
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.79 E-value=7e-07 Score=90.94 Aligned_cols=273 Identities=9% Similarity=0.126 Sum_probs=157.2
Q ss_pred CCEEEEeeCCCcEEEEeC--CccccccccCc----------cC-EEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeee
Q 047728 120 GDLLYTGSDSKNIRVWKN--QREFSGFKSNS----------GL-VKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRV 186 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~----------~~-V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 186 (474)
+..|++++.++.|..+|. ++.+-.+.... .. -..+.+.++.|+.++.|+.|..+|..+++.......
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 556666666666766663 22222221110 01 122345678899999999999999999987765543
Q ss_pred cccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC------CCcEEEEEcCCcceeeeeee
Q 047728 187 GTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW------DKTFKVWRTSDYKCLESVIA 260 (474)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~ 260 (474)
...... +.....++ + .+..++++.. ++.|..+|.++++.+..+..
T Consensus 146 ~~~~~~-----------------------~~~~~~P~----v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 146 TDPAKP-----------------------YSITGAPR----V--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp SCTTSS-----------------------CBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCCCCc-----------------------ceecCCCE----E--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 210000 00001111 1 1335555543 58999999999999887753
Q ss_pred cC-------------------------------cceeEEEecCCC-eEEEeeCCC-------------------cEEEEE
Q 047728 261 HD-------------------------------DAVNSIVAGFDG-LVFTGSADG-------------------TVKVWR 289 (474)
Q Consensus 261 ~~-------------------------------~~v~~v~~~~~~-~l~~~~~dg-------------------~i~iwd 289 (474)
.. .....+++.++. .++.++.++ .|..+|
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD 276 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence 11 011235677665 777777665 388888
Q ss_pred cccCCCceeeeeeeeeeccc-------ccEEEEEEcCCCC---EEEEEcCCCcEEEeecCcccccceeeee---------
Q 047728 290 RELQGKGTKHFFSQTLLKQE-------CAVTALAISPDAA---IVYCGSSDGLVNFWERELNLSHGGVLRG--------- 350 (474)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~-------~~v~~l~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~--------- 350 (474)
.++++...... ...|. .++....+..+++ .+++++.+|.++++|.++++.+......
T Consensus 277 ~~tG~~~W~~~----~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 277 PDTGKLAWHYQ----VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD 352 (668)
T ss_dssp TTTCCEEEEEE----SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred CCCCceeeEee----cCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccc
Confidence 87665322111 11111 2233233333564 6888999999999999888654211100
Q ss_pred ----------------------------cceeeEEEEecCCEEEEE----------------------------------
Q 047728 351 ----------------------------HKLAILCLVTAGNLVFSG---------------------------------- 368 (474)
Q Consensus 351 ----------------------------~~~~v~~~~~~~~~l~sg---------------------------------- 368 (474)
+.-...+++++..+++..
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 000114556655555542
Q ss_pred --eCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 369 --SADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 369 --s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
..+|.|..||..+++.. ..... ..++....+...+. +++.++.||.|++||..+++.
T Consensus 433 ~~~~~g~l~A~D~~tG~~~--W~~~~-~~~~~~~~~~t~gg--------~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAA--WKVPY-PTHWNGGTLSTAGN--------LVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp GGGCEEEEEEEETTTTEEE--EEEEE-SSSCCCCEEEETTT--------EEEEECTTSEEEEEETTTCCE
T ss_pred CCCccceEEEEeCCCCcEE--EEccC-CCCCcCceeEeCCC--------EEEEECCcccchhhhhhcChh
Confidence 13488999999998843 33322 22333344555666 788899999999999998854
No 241
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.78 E-value=2.2e-07 Score=86.85 Aligned_cols=231 Identities=11% Similarity=-0.002 Sum_probs=138.8
Q ss_pred eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE---------
Q 047728 169 KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS--------- 239 (474)
Q Consensus 169 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--------- 239 (474)
+|.++|.++.+.......+ ..+ .+.++||+++++++.
T Consensus 47 ~vsvID~~t~~v~~~i~vG--------------------------------~~P--~i~~spDg~~lyVan~~~~r~~~G 92 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGA--------------------------------FLS--LAVAGHSGSDFALASTSFARSAKG 92 (368)
T ss_dssp EEEEEETTTTEEEEEEEEC--------------------------------TTC--EEEECTTSSCEEEEEEEETTTTSS
T ss_pred eEEEEECCCCeEEEEEeCC--------------------------------CCC--ceEECCCCCEEEEEcccccccccC
Confidence 7889999888765443322 224 699999999999886
Q ss_pred -CCCcEEEEEcCCcceeeeeeec-------CcceeEEEecCCC-eEEEeeC--CCcEEE--EEcccCCCceeeeeeeeee
Q 047728 240 -WDKTFKVWRTSDYKCLESVIAH-------DDAVNSIVAGFDG-LVFTGSA--DGTVKV--WRRELQGKGTKHFFSQTLL 306 (474)
Q Consensus 240 -~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~v~~~~~~-~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~ 306 (474)
.++.|.+||+.+++.+.++... ......++++||+ +++++.. +..|.+ +|+.. .. ...
T Consensus 93 ~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~-----~i~ 163 (368)
T 1mda_H 93 KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQ-----LTK 163 (368)
T ss_dssp SEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EE-----EEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ce-----EEE
Confidence 3688999999999999998754 1346789999999 6776654 467888 88864 00 111
Q ss_pred cccccEEEEEEcCCC-CEEEEEcCCCcEEEeecCc-----ccccce---eeeecceeeEEEEecCCEEEEEeCCCcEEEE
Q 047728 307 KQECAVTALAISPDA-AIVYCGSSDGLVNFWEREL-----NLSHGG---VLRGHKLAILCLVTAGNLVFSGSADMSICIW 377 (474)
Q Consensus 307 ~~~~~v~~l~~~~~~-~~l~~~~~dg~i~v~d~~~-----~~~~~~---~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iw 377 (474)
. ... ..+.|++ ..+++.+.|+.+.+.|+.. +..... ...-...+. . .+++..++..+. +.|.+.
T Consensus 164 v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~vi 236 (368)
T 1mda_H 164 S-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQG 236 (368)
T ss_dssp C-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEE
T ss_pred C-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEE
Confidence 0 011 1123433 3445566788888888776 222110 011111222 3 666666666666 999999
Q ss_pred ECCCCceEEEEeecCC----------ccceEEEEEeeCCccccccceEEEEEe-c---C-----CCcEEEEEccCCCCCC
Q 047728 378 RRKENEHICLSMLTGH----------SGPVKCLAVEKDDESLSREKRWILYSG-S---L-----DKSVKMWRVSEQAPPL 438 (474)
Q Consensus 378 d~~~~~~~~~~~~~~h----------~~~v~~l~~~~~~~~~~~~~~~~l~s~-s---~-----Dg~i~vw~~~~~~~~~ 438 (474)
|........+..+... ......++++|+++ .++.+ . . ++.+.++|+.+.+.
T Consensus 237 D~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~--------~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v-- 306 (368)
T 1mda_H 237 DIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD--------GIMILTVEHSRSCLAAAENTSSVTASVGQT-- 306 (368)
T ss_dssp ECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT--------EEEEEEEECSSCTTSCEEEEEEEESSSCCE--
T ss_pred ECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC--------EEEEEeccccCcccccCCCEEEEECCCCeE--
Confidence 9975432222222110 01122268999987 44433 2 1 23466999988742
Q ss_pred CCCcccccccCCCCCCCccccCCCCCcCCce
Q 047728 439 VSTTQQHPLEGHGVAPNSLPYAPSFSSQGRI 469 (474)
Q Consensus 439 ~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~ 469 (474)
...+.... .+..+ +|++||+.
T Consensus 307 -----v~~i~vg~-~p~gi----~~s~Dg~~ 327 (368)
T 1mda_H 307 -----SGPISNGH-DSDAI----IAAQDGAS 327 (368)
T ss_dssp -----EECCEEEE-EECEE----EECCSSSC
T ss_pred -----EEEEECCC-CcceE----EECCCCCE
Confidence 23332221 34455 78899984
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.77 E-value=4.1e-06 Score=85.29 Aligned_cols=262 Identities=16% Similarity=0.187 Sum_probs=150.7
Q ss_pred EEcCCEEEEeeCCCcEEEEeC--CccccccccCc----cCEE-EEEecCCEEEEEeC------CCeEEEEecCCCCccee
Q 047728 117 AAAGDLLYTGSDSKNIRVWKN--QREFSGFKSNS----GLVK-AIVISNEKIFSGHQ------DGKIRVWKVSSKDASIH 183 (474)
Q Consensus 117 ~~~~~~l~tgs~dg~v~vwd~--~~~~~~~~~h~----~~V~-~i~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~ 183 (474)
+..+..|+.++.|+.|..+|. ++.+-.+.... ..+. ...+.++.++.+.. +|.|..+|..+++....
T Consensus 114 ~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 114 ALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp EEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred EEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 345677888888999999984 34433332210 1111 11223566666653 58999999999988766
Q ss_pred eeecc-cCccce---eeeeecCCCCeEEEeeecccee--eeccCCeeEEEecCCCCEEEEEECCC---------------
Q 047728 184 KRVGT-LPTFKD---FIKCSMKPSNYIEVRRHRNGLW--IKHFDAISSLSMSEDQNLLYSASWDK--------------- 242 (474)
Q Consensus 184 ~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~dg--------------- 242 (474)
..... .+.... .+..... ... ....| .++......+++.++..+++.++.++
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~------~~~-g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~ 266 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAK------TWQ-GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDN 266 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHT------TCC-SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCC
T ss_pred ecccCCCCCccccccccccccc------cCC-ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCc
Confidence 54321 010000 0000000 000 00000 01223334578888888898888766
Q ss_pred ----cEEEEEcCCcceeeeeee--cC-------cceeEEEecCCC----eEEEeeCCCcEEEEEcccCCCceeeeeee--
Q 047728 243 ----TFKVWRTSDYKCLESVIA--HD-------DAVNSIVAGFDG----LVFTGSADGTVKVWRRELQGKGTKHFFSQ-- 303 (474)
Q Consensus 243 ----~i~iwd~~~~~~~~~~~~--~~-------~~v~~v~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 303 (474)
.|..+|..+++.+..+.. |. .+.....+..++ .++.++.+|.+.++|.++++.........
T Consensus 267 l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~ 346 (668)
T 1kv9_A 267 LYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT 346 (668)
T ss_dssp TTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC
T ss_pred eeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccc
Confidence 399999999999888764 22 122222222345 48899999999999988765321110000
Q ss_pred ---eee-ccccc------------------------EEEEEEcCCCCEEEEEc---------------------------
Q 047728 304 ---TLL-KQECA------------------------VTALAISPDAAIVYCGS--------------------------- 328 (474)
Q Consensus 304 ---~~~-~~~~~------------------------v~~l~~~~~~~~l~~~~--------------------------- 328 (474)
... ....+ -..++++|+..++++..
T Consensus 347 w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 426 (668)
T 1kv9_A 347 WAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFA 426 (668)
T ss_dssp SEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGG
T ss_pred cccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccc
Confidence 000 00000 01267788776666421
Q ss_pred ---------CCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceE
Q 047728 329 ---------SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHI 385 (474)
Q Consensus 329 ---------~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~ 385 (474)
.+|.|..||+.+++..-+...........+...+.+++.++.|+.++.||.++++..
T Consensus 427 ~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 427 DATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp GCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 247899999988876544443333223456667899999999999999999999844
No 243
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.77 E-value=4.3e-06 Score=78.71 Aligned_cols=221 Identities=15% Similarity=0.139 Sum_probs=133.3
Q ss_pred cCCE-EEEeeCCCcEEEEeCCc------cccccc-------cCccCEEEEEec-CCEEEEEeCC------CeEEEEecCC
Q 047728 119 AGDL-LYTGSDSKNIRVWKNQR------EFSGFK-------SNSGLVKAIVIS-NEKIFSGHQD------GKIRVWKVSS 177 (474)
Q Consensus 119 ~~~~-l~tgs~dg~v~vwd~~~------~~~~~~-------~h~~~V~~i~~~-~~~l~s~~~d------g~i~vwd~~~ 177 (474)
++++ +++|..++.|.|+|+.. ....+. .....-..+... +..++++..+ |.|.+.|..+
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTT
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCC
Confidence 3554 55677788999999641 122221 011122233333 3366665555 7899999988
Q ss_pred CCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE------------------
Q 047728 178 KDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS------------------ 239 (474)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s------------------ 239 (474)
.+.......... -..--..+.|+|+++.+++..
T Consensus 174 ~~v~~~~~~~~~-----------------------------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~ 224 (462)
T 2ece_A 174 FEPLGKWEIDRG-----------------------------DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKD 224 (462)
T ss_dssp CCEEEECCSBCT-----------------------------TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHH
T ss_pred CeEEEEEccCCC-----------------------------CccccceEEECCCCCEEEEccCcCccccccccchhhhhh
Confidence 876543322210 111233578899999888875
Q ss_pred -CCCcEEEEEcCCcceeeeeeec--CcceeEEEe--cCCC-eEEEee------CCCcEEEEEcccCCCceeeeee--ee-
Q 047728 240 -WDKTFKVWRTSDYKCLESVIAH--DDAVNSIVA--GFDG-LVFTGS------ADGTVKVWRRELQGKGTKHFFS--QT- 304 (474)
Q Consensus 240 -~dg~i~iwd~~~~~~~~~~~~~--~~~v~~v~~--~~~~-~l~~~~------~dg~i~iwd~~~~~~~~~~~~~--~~- 304 (474)
.+.+|.+||+.+++.+.++... ......+.| +|++ ++++++ .+++|.+|..+. +.-...... ..
T Consensus 225 ~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~ 303 (462)
T 2ece_A 225 RYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAE 303 (462)
T ss_dssp HSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCE
T ss_pred ccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCc
Confidence 3689999999998888887653 133455555 9998 444444 567888877653 111110000 00
Q ss_pred -eec-----------ccccEEEEEEcCCCCEEEEEcC-CCcEEEeecCcc---cccceeeee-----------c----ce
Q 047728 305 -LLK-----------QECAVTALAISPDAAIVYCGSS-DGLVNFWERELN---LSHGGVLRG-----------H----KL 353 (474)
Q Consensus 305 -~~~-----------~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~---~~~~~~~~~-----------~----~~ 353 (474)
... .......|.+++|+++|+++.. .+.|.+||+... .....+..+ . ..
T Consensus 304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggP 383 (462)
T 2ece_A 304 PLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAP 383 (462)
T ss_dssp ECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCC
T ss_pred cccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCC
Confidence 000 0245788999999999988766 678999998633 222222222 1 13
Q ss_pred eeEEEEecCCEEEEEe
Q 047728 354 AILCLVTAGNLVFSGS 369 (474)
Q Consensus 354 ~v~~~~~~~~~l~sgs 369 (474)
.-+.++++|++|+++.
T Consensus 384 r~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 384 QMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCEEECTTSSEEEEEC
T ss_pred CEEEEcCCCCEEEEEc
Confidence 5588999999999887
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.76 E-value=2.6e-06 Score=75.24 Aligned_cols=196 Identities=10% Similarity=0.030 Sum_probs=128.0
Q ss_pred CeeEEEecCCCCEEEEEE-C--CCcEEEEEcCCcceeeeeeecCc-ceeEEEecCCCeEEEeeCCCcEEEEEcccCCCce
Q 047728 222 AISSLSMSEDQNLLYSAS-W--DKTFKVWRTSDYKCLESVIAHDD-AVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s-~--dg~i~iwd~~~~~~~~~~~~~~~-~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 297 (474)
....+.|++++ .|+.++ . ++.|.++|+.+++.+..+..... ....+++..+...++.-.++.+.++|..+...
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v-- 98 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSN-- 98 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEE--
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcE--
Confidence 35799999986 555443 3 58999999999999888764222 22345665433555556789999999875432
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecc-e-----eeEEEEecCCEEEEEeCC
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHK-L-----AILCLVTAGNLVFSGSAD 371 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~-----~v~~~~~~~~~l~sgs~d 371 (474)
...+...... ...++++++.++++..++.|.++|..+.+....+..+.. . .-+.+. ++...+....+
T Consensus 99 ----~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~ 171 (266)
T 2iwa_A 99 ----IKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQT 171 (266)
T ss_dssp ----EEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred ----EEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCC
Confidence 1122111011 133556777777777789999999988766655543321 1 123333 56444444467
Q ss_pred CcEEEEECCCCceEEEEeecCC-----------ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 372 MSICIWRRKENEHICLSMLTGH-----------SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 372 g~i~iwd~~~~~~~~~~~~~~h-----------~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+.|.+.|..+++......+.+. ....+.|+|+|+++. +++++...+.|.+-++...
T Consensus 172 ~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~-------lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 172 DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKR-------IFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTE-------EEEEETTCSEEEEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCE-------EEEECCCCCeEEEEEEecc
Confidence 8999999999984433333211 135689999999864 7888889999999998775
No 245
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.75 E-value=2.2e-06 Score=85.47 Aligned_cols=243 Identities=7% Similarity=-0.039 Sum_probs=138.5
Q ss_pred EEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCC
Q 047728 154 IVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQN 233 (474)
Q Consensus 154 i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~ 233 (474)
++..++.++.++.|+.|..+|..+++............ . +.-...++ + .+.
T Consensus 111 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~----------------------~-~~~~~~P~----v--~~g 161 (571)
T 2ad6_A 111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKV----------------------G-STLTQAPF----V--AKD 161 (571)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGG----------------------T-CBCCSCCE----E--ETT
T ss_pred cEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCc----------------------c-ceeccCCE----E--ECC
Confidence 34568899999999999999999998776544321000 0 00011111 1 134
Q ss_pred EEEEEEC------CCcEEEEEcCCcceeeeeeecCcc-------------------------------------e-eEEE
Q 047728 234 LLYSASW------DKTFKVWRTSDYKCLESVIAHDDA-------------------------------------V-NSIV 269 (474)
Q Consensus 234 ~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~-------------------------------------v-~~v~ 269 (474)
.+++++. ++.|..+|.++++.+..+...... + ..++
T Consensus 162 ~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a 241 (571)
T 2ad6_A 162 TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYA 241 (571)
T ss_dssp EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCE
T ss_pred EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEE
Confidence 5666654 789999999999988776542211 0 1244
Q ss_pred ecCCC-eEEEeeCC----------------CcEEEEEcccCCCceeeeeeee----eecccccEEEEEEcCCCC---EEE
Q 047728 270 AGFDG-LVFTGSAD----------------GTVKVWRRELQGKGTKHFFSQT----LLKQECAVTALAISPDAA---IVY 325 (474)
Q Consensus 270 ~~~~~-~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~----~~~~~~~v~~l~~~~~~~---~l~ 325 (474)
+.++. .++.+..+ +.|..+|.++++.......... ......++. +....+++ .++
T Consensus 242 ~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~ 320 (571)
T 2ad6_A 242 YDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLS 320 (571)
T ss_dssp EETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEE
T ss_pred EcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEE
Confidence 55543 55555432 3588888876543211110000 001112222 22224663 577
Q ss_pred EEcCCCcEEEeecCcccccceeeeec----------------------------------------ceeeEEEEecCCEE
Q 047728 326 CGSSDGLVNFWERELNLSHGGVLRGH----------------------------------------KLAILCLVTAGNLV 365 (474)
Q Consensus 326 ~~~~dg~i~v~d~~~~~~~~~~~~~~----------------------------------------~~~v~~~~~~~~~l 365 (474)
.++.+|.++++|..+++.+....... .-...+++++..++
T Consensus 321 ~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~ 400 (571)
T 2ad6_A 321 HIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTL 400 (571)
T ss_dssp EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred EeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEE
Confidence 88899999999988876543322111 00123566666666
Q ss_pred EEEe-------------------------------------CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcc
Q 047728 366 FSGS-------------------------------------ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDES 408 (474)
Q Consensus 366 ~sgs-------------------------------------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 408 (474)
++.. .+|.|..||..+++.. ..... ..++....+...+.
T Consensus 401 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~--W~~~~-~~~~~~~~~~t~gg- 476 (571)
T 2ad6_A 401 YAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK--WTKWE-KFAAWGGTLYTKGG- 476 (571)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE--EEEEE-SSCCCSBCEEETTT-
T ss_pred EEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE--EEecC-CCCccceeEEECCC-
Confidence 6653 3578999999888743 33321 12233333333444
Q ss_pred ccccceEEEEEecCCCcEEEEEccCCCCC
Q 047728 409 LSREKRWILYSGSLDKSVKMWRVSEQAPP 437 (474)
Q Consensus 409 ~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~ 437 (474)
+++.++.||.|+.||..+++..
T Consensus 477 -------~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 477 -------LVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp -------EEEEECTTSEEEEEETTTCCEE
T ss_pred -------EEEEEcCCCeEEEEECCCCCEE
Confidence 6777899999999999988543
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.73 E-value=7.2e-06 Score=81.78 Aligned_cols=266 Identities=12% Similarity=0.080 Sum_probs=143.0
Q ss_pred EEcCCEEEEeeCCCcEEEEeCC--ccccccccCc----cCEE-EEEecCCEEEEEeC------CCeEEEEecCCCCccee
Q 047728 117 AAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNS----GLVK-AIVISNEKIFSGHQ------DGKIRVWKVSSKDASIH 183 (474)
Q Consensus 117 ~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~----~~V~-~i~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~ 183 (474)
+..+..|+.++.|+.|..+|.. +.+-...... ..+. .....++.++.++. +|.|..+|..+++....
T Consensus 112 ~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 112 AYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred EEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 3457788888888999888843 3332222111 0111 11223667777765 79999999999987765
Q ss_pred eeecccCccceeeeeecCCCC-e-------EEEeeeccceee-eccCCeeEEEecCCCCEEEEEECC-------------
Q 047728 184 KRVGTLPTFKDFIKCSMKPSN-Y-------IEVRRHRNGLWI-KHFDAISSLSMSEDQNLLYSASWD------------- 241 (474)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~d------------- 241 (474)
........ ............ + ...+. ...+. +-......+++.++...++.+..+
T Consensus 192 ~~~~~~~~-~~~~~p~~~~~~~~~G~~~~g~~~w~--~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~ 268 (571)
T 2ad6_A 192 AFATGSDD-SVRLAKDFNSANPHYGQFGLGTKTWE--GDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN 268 (571)
T ss_dssp EESSSCHH-HHTBCTTTTTTCGGGCCSSHHHHTSS--TTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred EccCCCcc-ccccCcccccccccccccccccccCc--ccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCc
Confidence 54321100 000000000000 0 00000 00000 000011235566666677766532
Q ss_pred ---CcEEEEEcCCcceeeeeeecCc------ceeE---EEecCCC----eEEEeeCCCcEEEEEcccCCCceeeeeee--
Q 047728 242 ---KTFKVWRTSDYKCLESVIAHDD------AVNS---IVAGFDG----LVFTGSADGTVKVWRRELQGKGTKHFFSQ-- 303 (474)
Q Consensus 242 ---g~i~iwd~~~~~~~~~~~~~~~------~v~~---v~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 303 (474)
+.|..+|.++++.+..+..... .+.. +....++ .++.++.+|.+.++|.++++.........
T Consensus 269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~ 348 (571)
T 2ad6_A 269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV 348 (571)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCc
Confidence 3599999999998887754211 1111 2222355 36678889999999987654322111100
Q ss_pred ----eee-cccccE--------------------------EEEEEcCCCCEEEEEc------------------------
Q 047728 304 ----TLL-KQECAV--------------------------TALAISPDAAIVYCGS------------------------ 328 (474)
Q Consensus 304 ----~~~-~~~~~v--------------------------~~l~~~~~~~~l~~~~------------------------ 328 (474)
... ....++ ..++++|+..++++..
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 428 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT 428 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence 000 000111 2467888777777653
Q ss_pred -------------CCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceE
Q 047728 329 -------------SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHI 385 (474)
Q Consensus 329 -------------~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~ 385 (474)
.+|.|..||..+++..-....+.......+...+.+++.++.||.|+.||.++++..
T Consensus 429 ~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 347899999988866544433322222233456788888999999999999999844
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.67 E-value=2.2e-05 Score=78.36 Aligned_cols=280 Identities=11% Similarity=0.059 Sum_probs=144.4
Q ss_pred EEEeeCCCcEEEEeC--CccccccccCc----cCEE-EEEecCCEEEEEe------CCCeEEEEecCCCCcceeeeeccc
Q 047728 123 LYTGSDSKNIRVWKN--QREFSGFKSNS----GLVK-AIVISNEKIFSGH------QDGKIRVWKVSSKDASIHKRVGTL 189 (474)
Q Consensus 123 l~tgs~dg~v~vwd~--~~~~~~~~~h~----~~V~-~i~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~ 189 (474)
|+.++.|+.|..+|. ++.+-...... ..+. .-.+.++.++.++ .+|.|+.+|..+++..........
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~ 203 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP 203 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence 777777888877773 33322221111 0111 1122356677665 389999999999988765543211
Q ss_pred CccceeeeeecCCC-Ce-------EEEeeeccceeeeccCCe-eEEEecCCCCEEEEEECC----------------CcE
Q 047728 190 PTFKDFIKCSMKPS-NY-------IEVRRHRNGLWIKHFDAI-SSLSMSEDQNLLYSASWD----------------KTF 244 (474)
Q Consensus 190 ~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~h~~~V-~~l~~~~~~~~l~s~s~d----------------g~i 244 (474)
... ..+....... .. ...+ ....+..-...+ ..+++.++..+++.+..+ +.|
T Consensus 204 ~~~-~~~~p~~~~~~~~~g~~~~g~~tw--~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 204 DKD-LLLASDFNIKNPHYGQKGLGTGTW--EGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp HHH-HTBCTTTTTTCGGGCCTTHHHHTS--STTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred ccc-cccccccccccccccccccccccC--CCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 000 0000000000 00 0000 000000001111 134566777778877665 379
Q ss_pred EEEEcCCcceeeeeeecCcce---------eEEEec-CCC----eEEEeeCCCcEEEEEcccCCCceeeeeee------e
Q 047728 245 KVWRTSDYKCLESVIAHDDAV---------NSIVAG-FDG----LVFTGSADGTVKVWRRELQGKGTKHFFSQ------T 304 (474)
Q Consensus 245 ~iwd~~~~~~~~~~~~~~~~v---------~~v~~~-~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~ 304 (474)
..+|.++++.+..++...... .-+... .++ .++.++.+|.+.++|.++++......... .
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 999999999988776432111 112221 345 46678899999999987655322111100 0
Q ss_pred ee-cccccE--------------------------EEEEEcCCCCEEEEEc-----------------------------
Q 047728 305 LL-KQECAV--------------------------TALAISPDAAIVYCGS----------------------------- 328 (474)
Q Consensus 305 ~~-~~~~~v--------------------------~~l~~~~~~~~l~~~~----------------------------- 328 (474)
.. ....++ ..++++|+..++++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 00 000011 2356666666555431
Q ss_pred ----------CCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCcc-ce
Q 047728 329 ----------SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG-PV 397 (474)
Q Consensus 329 ----------~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~-~v 397 (474)
..|.|..||+.+++..-....+.....-.+...+.+++.++.|+.++.||.++++.. ..+....+ ..
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l--W~~~l~~g~~~ 518 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL--WKFKIPSGAIG 518 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE--EEEECSSCCCS
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEE--EEeeCCCCcEe
Confidence 346788888888766544432222111224456888999999999999999999854 33332221 11
Q ss_pred EEEEEeeCCc
Q 047728 398 KCLAVEKDDE 407 (474)
Q Consensus 398 ~~l~~~~~~~ 407 (474)
.-+.+..+++
T Consensus 519 ~P~~y~~~G~ 528 (599)
T 1w6s_A 519 YPMTYTHKGT 528 (599)
T ss_dssp CCEEEEETTE
T ss_pred ccEEEEeCCE
Confidence 2245556665
No 248
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=8.2e-05 Score=77.49 Aligned_cols=284 Identities=11% Similarity=0.123 Sum_probs=166.8
Q ss_pred CcEEEEEEc-CCEEEEeeCCCcEEEEeCCcc-ccccc--------cCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCC
Q 047728 111 GHIYSLAAA-GDLLYTGSDSKNIRVWKNQRE-FSGFK--------SNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKD 179 (474)
Q Consensus 111 ~~i~~~~~~-~~~l~tgs~dg~v~vwd~~~~-~~~~~--------~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~ 179 (474)
..|.++..+ ...|..|+.++-|..||.... +..+. .....|.++..+ ...|..|..+ -|.+||..+++
T Consensus 163 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~ 241 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTET 241 (781)
T ss_dssp CCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTE
T ss_pred cceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCc
Confidence 457888876 556667777755888885432 22221 113568888887 4567677766 48888876654
Q ss_pred cceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee
Q 047728 180 ASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI 259 (474)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 259 (474)
.......... ...-....|.++...+++. |..|+..+-|.++|..+.+......
T Consensus 242 ~~~~~~~~~~-------------------------~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~ 295 (781)
T 3v9f_A 242 FTNFHNNPGN-------------------------IHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQ 295 (781)
T ss_dssp EEC------------------------------------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-------
T ss_pred EEEEEcCCCc-------------------------cccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeec
Confidence 3211000000 0000345688998887765 5567764568899987655322111
Q ss_pred --------------ecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeee-----eeecccccEEEEEEcCC
Q 047728 260 --------------AHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQ-----TLLKQECAVTALAISPD 320 (474)
Q Consensus 260 --------------~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~v~~l~~~~~ 320 (474)
.....|.++...+++.|..|+.++-|..++.....-. ..... ........|.++...++
T Consensus 296 ~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~v~~i~~d~~ 373 (781)
T 3v9f_A 296 IRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFH--TWSYSPTQMNESSLSNKVVSSVCDDGQ 373 (781)
T ss_dssp --CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCE--EEC----CCCSSCCSSSCEEEEEECTT
T ss_pred cccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcce--eeccCccccccCCCCCcceEEEEEcCC
Confidence 1345789999988888888998888999987543211 00000 01113456999999888
Q ss_pred CCEEEEEcCCCcEEEeecCcccccceee--eecceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEeecCCccce
Q 047728 321 AAIVYCGSSDGLVNFWERELNLSHGGVL--RGHKLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPV 397 (474)
Q Consensus 321 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v 397 (474)
+.+. +|+.++-|..||..+........ ......|.++..+ ...|..|+.++-|..+|..+++.............|
T Consensus 374 g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v 452 (781)
T 3v9f_A 374 GKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDV 452 (781)
T ss_dssp SCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCE
T ss_pred CCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeE
Confidence 7755 46666668889876542211100 1123456777665 445666887778999998777532111001234678
Q ss_pred EEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 398 KCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 398 ~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
.++...+++. |..|+. +-|..|+..++
T Consensus 453 ~~i~~d~~g~---------lwigt~-~Gl~~~~~~~~ 479 (781)
T 3v9f_A 453 RVFYEDKNKK---------IWIGTH-AGVFVIDLASK 479 (781)
T ss_dssp EEEEECTTSE---------EEEEET-TEEEEEESSSS
T ss_pred EEEEECCCCC---------EEEEEC-CceEEEeCCCC
Confidence 8988887776 444444 45888887664
No 249
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=4.6e-05 Score=79.34 Aligned_cols=284 Identities=10% Similarity=0.060 Sum_probs=165.8
Q ss_pred CcEEEEEEc-CCEEEEeeCCCcEEEEeCCcc-cccc---------------ccCccCEEEEEec-CCEEEEEeCCCeEEE
Q 047728 111 GHIYSLAAA-GDLLYTGSDSKNIRVWKNQRE-FSGF---------------KSNSGLVKAIVIS-NEKIFSGHQDGKIRV 172 (474)
Q Consensus 111 ~~i~~~~~~-~~~l~tgs~dg~v~vwd~~~~-~~~~---------------~~h~~~V~~i~~~-~~~l~s~~~dg~i~v 172 (474)
..|+++..+ ...|..|+..+-|.+++.... +..+ .-....|.++..+ ...|..|..++-|..
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~ 337 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINF 337 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEE
Confidence 458888887 456777877455888875422 1111 1234578999888 557888887777888
Q ss_pred EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc
Q 047728 173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY 252 (474)
Q Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~ 252 (474)
++................ ... .-....|.++...+++. |..|+.++-|..||..++
T Consensus 338 ~~~~~~~~~~~~~~~~~~---------------------~~~--~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~ 393 (781)
T 3v9f_A 338 ISNAPPTFHTWSYSPTQM---------------------NES--SLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKR 393 (781)
T ss_dssp ECSSCCSCEEEC----CC---------------------CSS--CCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEE
T ss_pred eCCCCCcceeeccCcccc---------------------ccC--CCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCC
Confidence 887765432111000000 000 00335689998887765 556676666999998765
Q ss_pred ceeeee---eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC
Q 047728 253 KCLESV---IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS 329 (474)
Q Consensus 253 ~~~~~~---~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 329 (474)
...... ......|.++...+++.|..|+.++-|..+|...... . .. .........|.++...+++.+.+ |+.
T Consensus 394 ~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~--~-~~-~~~~~~~~~v~~i~~d~~g~lwi-gt~ 468 (781)
T 3v9f_A 394 VAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKF--Q-II-ELEKNELLDVRVFYEDKNKKIWI-GTH 468 (781)
T ss_dssp EEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEE--E-EC-CSTTTCCCCEEEEEECTTSEEEE-EET
T ss_pred eEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcE--E-Ee-ccCCCCCCeEEEEEECCCCCEEE-EEC
Confidence 432211 1234678899888888888888877888888653211 0 00 00012346789999988877555 445
Q ss_pred CCcEEEeecCcccccceeeeec-----ceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEeec-CCccceEEEEE
Q 047728 330 DGLVNFWERELNLSHGGVLRGH-----KLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLT-GHSGPVKCLAV 402 (474)
Q Consensus 330 dg~i~v~d~~~~~~~~~~~~~~-----~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~~ 402 (474)
+-|..||..+.... ...... ...+.++..+ ...|..|+.++-|..||..+.+........ .....|.++..
T Consensus 469 -~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 546 (781)
T 3v9f_A 469 -AGVFVIDLASKKVI-HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYR 546 (781)
T ss_dssp -TEEEEEESSSSSCC-EEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEE
T ss_pred -CceEEEeCCCCeEE-ecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEE
Confidence 55888987765322 111111 2345666554 334555666455888988776532111101 12356889988
Q ss_pred eeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 403 EKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 403 ~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
.+++. +.+ |+.+|.|..|+..+.
T Consensus 547 d~~g~--------lWi-~T~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 547 SSKGQ--------MWL-ATGEGLVCFPSARNF 569 (781)
T ss_dssp CTTSC--------EEE-EETTEEEEESCTTTC
T ss_pred CCCCC--------EEE-EECCCceEEECCCCC
Confidence 88887 444 444675577776654
No 250
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.59 E-value=2.7e-05 Score=71.74 Aligned_cols=194 Identities=13% Similarity=0.072 Sum_probs=112.0
Q ss_pred CCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee-----cCcceeEEEecC-CCeEEEeeC-------------
Q 047728 221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA-----HDDAVNSIVAGF-DGLVFTGSA------------- 281 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~v~~~~-~~~l~~~~~------------- 281 (474)
..+..+++.++...|+.+...+.|..+|..+++. ..+.. .......+++.+ +|.++.+..
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 3578899997334566665556688888776542 22211 113467899999 884444432
Q ss_pred -----CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccccc-eeeeec-ce
Q 047728 282 -----DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLSHG-GVLRGH-KL 353 (474)
Q Consensus 282 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~-~~~~~~-~~ 353 (474)
++.|..||...... ............++++++++.|+++ ...+.|.+|++.....-. ..+... ..
T Consensus 159 ~~~~~~g~v~~~d~~~~~~-------~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP 231 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKET-------TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNP 231 (322)
T ss_dssp HHTCCCEEEEEEETTTTEE-------EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSE
T ss_pred cccCCCceEEEEeCCCCEE-------EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCC
Confidence 35677777643211 1111112335679999999876655 556889999987532110 111111 12
Q ss_pred eeEEEEecCCEEEEEeC----------CCcEEEEECCCCceEEEEeecCC----ccceEEEEEeeCCccccccceEEEEE
Q 047728 354 AILCLVTAGNLVFSGSA----------DMSICIWRRKENEHICLSMLTGH----SGPVKCLAVEKDDESLSREKRWILYS 419 (474)
Q Consensus 354 ~v~~~~~~~~~l~sgs~----------dg~i~iwd~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~~~~~~~~l~s 419 (474)
.-+++.++|++.++... .+.|..+|.. ++. +..+... ...++++++ .++. ++++
T Consensus 232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~--~~~~~~~~g~~~~~~~~~~~-~~g~--------L~v~ 299 (322)
T 2fp8_A 232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNI--LEVIPLPPPFAGEHFEQIQE-HDGL--------LYIG 299 (322)
T ss_dssp EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCE--EEEEECCTTTTTSCCCEEEE-ETTE--------EEEE
T ss_pred CCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCE--EEEEECCCCCccccceEEEE-eCCE--------EEEe
Confidence 33566677886666544 4678888875 442 2233222 234666766 4555 6667
Q ss_pred ecCCCcEEEEEccCC
Q 047728 420 GSLDKSVKMWRVSEQ 434 (474)
Q Consensus 420 ~s~Dg~i~vw~~~~~ 434 (474)
....+.|.++++...
T Consensus 300 ~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 300 TLFHGSVGILVYDKK 314 (322)
T ss_dssp CSSCSEEEEEEC---
T ss_pred ecCCCceEEEecccc
Confidence 667888999998654
No 251
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.59 E-value=4.5e-05 Score=74.45 Aligned_cols=262 Identities=10% Similarity=-0.026 Sum_probs=142.2
Q ss_pred cCCEEEEeeC-CCcEEEEeCCc--ccccccc-CccCEEEEEe----cCCEEEEEe------------------CCCeEEE
Q 047728 119 AGDLLYTGSD-SKNIRVWKNQR--EFSGFKS-NSGLVKAIVI----SNEKIFSGH------------------QDGKIRV 172 (474)
Q Consensus 119 ~~~~l~tgs~-dg~v~vwd~~~--~~~~~~~-h~~~V~~i~~----~~~~l~s~~------------------~dg~i~v 172 (474)
+|++|+.... ++.|.+.|+.. ....+.- .......+++ +++++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 7887776655 55688988653 2232221 2234667775 367888774 3457889
Q ss_pred EecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeecc---ceeeecc----CCeeEE------EecCCCCEEEEEE
Q 047728 173 WKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRN---GLWIKHF----DAISSL------SMSEDQNLLYSAS 239 (474)
Q Consensus 173 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~----~~V~~l------~~~~~~~~l~s~s 239 (474)
.|.++.+......+...+.. +..+.+ ..+..+..... ..+..-. +.|.-+ .+.++|+....
T Consensus 180 ID~~t~~v~~qI~Vgg~pd~---~~~spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i-- 253 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGNLDN---CDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL-- 253 (595)
T ss_dssp EETTTTEEEEEEEESSCCCC---EEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE--
T ss_pred EECCCCeEEEEEEeCCCccc---eEECCC-CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE--
Confidence 99888766555444322211 111111 11111111000 0000000 000000 11233443332
Q ss_pred CCCcEEEEEcCC--cce-eeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCC-----ceeeeeeeeeeccc
Q 047728 240 WDKTFKVWRTSD--YKC-LESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGK-----GTKHFFSQTLLKQE 309 (474)
Q Consensus 240 ~dg~i~iwd~~~--~~~-~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~ 309 (474)
+.|.+.|.++ ++. +..+.. .....++.++||| .++++..+.+|.++|+..... ............-.
T Consensus 254 --~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG 330 (595)
T 1fwx_A 254 --NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 330 (595)
T ss_dssp --TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred --CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence 4589999887 444 455544 3456889999999 566666789999999984310 00000111222334
Q ss_pred ccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc---------cccceeeeeccee-----e--EEEEecCCEEEEEeC---
Q 047728 310 CAVTALAISPDAAIVYCGSSDGLVNFWERELN---------LSHGGVLRGHKLA-----I--LCLVTAGNLVFSGSA--- 370 (474)
Q Consensus 310 ~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~---------~~~~~~~~~~~~~-----v--~~~~~~~~~l~sgs~--- 370 (474)
.....++|+|+|...++...|++|.+||+... ......+.-|-.+ . ..+++||++|++...
T Consensus 331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~sk 410 (595)
T 1fwx_A 331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSK 410 (595)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCc
Confidence 56889999999955556778999999998762 1122222222221 1 234678999999864
Q ss_pred CCcE----------EEEECCCCceEEEEe
Q 047728 371 DMSI----------CIWRRKENEHICLSM 389 (474)
Q Consensus 371 dg~i----------~iwd~~~~~~~~~~~ 389 (474)
|..+ .++|+.+++...+..
T Consensus 411 dr~~~~gp~~~~~~ql~dis~~~m~lv~d 439 (595)
T 1fwx_A 411 DRFLNVGPLKPENDQLIDISGDKMVLVHD 439 (595)
T ss_dssp TSSCCCCSSCCEEEEEEECSSSSCEEEEE
T ss_pred cccccCCCCCCCcceEEEcCCCcEEEEEE
Confidence 4321 889997766544433
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.58 E-value=7.8e-06 Score=71.34 Aligned_cols=175 Identities=10% Similarity=0.043 Sum_probs=110.4
Q ss_pred eeEEEecCCCCEEEEEECCC--cEEEEEcCCcceeeeeeecCcce-eEEEecCCCeEEEeeCCCcEEEEEcccCCCceee
Q 047728 223 ISSLSMSEDQNLLYSASWDK--TFKVWRTSDYKCLESVIAHDDAV-NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKH 299 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~v-~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 299 (474)
...|.|+ ++.++.+.+.+| .|+++|+++++.+..+....... ..++...+...++.-.++.+.+||..+...
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~---- 119 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ---- 119 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE----
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE----
Confidence 4788888 666666777766 89999999999998886543321 235554333444555689999999876553
Q ss_pred eeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeec-ceee---EEEEe-cCCEEEEEeCCCcE
Q 047728 300 FFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGH-KLAI---LCLVT-AGNLVFSGSADMSI 374 (474)
Q Consensus 300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~~v---~~~~~-~~~~l~sgs~dg~i 374 (474)
...+.... ....+.+++..|+.+..++.|.++|..+......+.... ..++ ..+.+ +|.+.+..-.++.|
T Consensus 120 --~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I 194 (262)
T 3nol_A 120 --VRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKI 194 (262)
T ss_dssp --EEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEE
T ss_pred --EEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeE
Confidence 12221111 112333567777777777889999998876655544321 1121 12222 56544444468899
Q ss_pred EEEECCCCceEEEEeecCC----------ccceEEEEEeeCCc
Q 047728 375 CIWRRKENEHICLSMLTGH----------SGPVKCLAVEKDDE 407 (474)
Q Consensus 375 ~iwd~~~~~~~~~~~~~~h----------~~~v~~l~~~~~~~ 407 (474)
.+.|..+++......+.+- ..-.+.|||+|+.+
T Consensus 195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~ 237 (262)
T 3nol_A 195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH 237 (262)
T ss_dssp EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence 9999999985433333211 13568999999877
No 253
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.52 E-value=7.1e-05 Score=74.70 Aligned_cols=181 Identities=20% Similarity=0.139 Sum_probs=107.0
Q ss_pred EEEecCCCCEEEEEEC--------------------C----CcEEEEEcCCcceeeeeee--cCc----ceeE-EEec--
Q 047728 225 SLSMSEDQNLLYSASW--------------------D----KTFKVWRTSDYKCLESVIA--HDD----AVNS-IVAG-- 271 (474)
Q Consensus 225 ~l~~~~~~~~l~s~s~--------------------d----g~i~iwd~~~~~~~~~~~~--~~~----~v~~-v~~~-- 271 (474)
.+++.|+..+++.+.. | +.|..+|..+++.+..++. |.. .+.. +.+.
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~ 329 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYK 329 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeee
Confidence 4667777778887763 2 5899999999999888754 211 1111 1111
Q ss_pred -CCC----eEEEeeCCCcEEEEEcccCCCceeeeeee------ee-------------e---------ccccc-------
Q 047728 272 -FDG----LVFTGSADGTVKVWRRELQGKGTKHFFSQ------TL-------------L---------KQECA------- 311 (474)
Q Consensus 272 -~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~-------------~---------~~~~~------- 311 (474)
.++ .++.++.+|.++++|.++++......... .. . .....
T Consensus 330 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 409 (582)
T 1flg_A 330 AKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFL 409 (582)
T ss_dssp CSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTT
T ss_pred cCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCc
Confidence 344 57788999999999987654321111100 00 0 00000
Q ss_pred ----EEEEEEcCCCCEEEEEc---------------------------------CCCcEEEeecCcccccceeeeeccee
Q 047728 312 ----VTALAISPDAAIVYCGS---------------------------------SDGLVNFWERELNLSHGGVLRGHKLA 354 (474)
Q Consensus 312 ----v~~l~~~~~~~~l~~~~---------------------------------~dg~i~v~d~~~~~~~~~~~~~~~~~ 354 (474)
-..++++|+..++++.. .+|.|..||+.+++..-+........
T Consensus 410 Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~ 489 (582)
T 1flg_A 410 GGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLW 489 (582)
T ss_dssp CSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCC
T ss_pred cccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCc
Confidence 01356677655555432 35789999998887654443332222
Q ss_pred eEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccce-EEEEEeeCCc
Q 047728 355 ILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPV-KCLAVEKDDE 407 (474)
Q Consensus 355 v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v-~~l~~~~~~~ 407 (474)
...+...+.+++.|+.|+.++.||.++++.. ..+....+.+ .-+.+..+++
T Consensus 490 ~g~~~tagglvf~g~~dg~l~A~D~~tG~~l--W~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 490 AGVLATAGNLVFTGTGDGYFKAFDAKSGKEL--WKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp SCCEEETTTEEEEECTTSEEEEEETTTCCEE--EEEECSSCCCSCCEEEEETTE
T ss_pred ccceEeCCCEEEEECCCCcEEEEECCCCCEE--EEecCCCCcccCceEEEECCE
Confidence 2234446888999999999999999999854 4443322211 2255667776
No 254
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.52 E-value=5.3e-05 Score=69.69 Aligned_cols=231 Identities=10% Similarity=0.021 Sum_probs=131.5
Q ss_pred EcCCEEEEeeCCCcEEEEeCCc-ccccccc--------------------CccCEEEEEec--CCEEEEEeCCCeEEEEe
Q 047728 118 AAGDLLYTGSDSKNIRVWKNQR-EFSGFKS--------------------NSGLVKAIVIS--NEKIFSGHQDGKIRVWK 174 (474)
Q Consensus 118 ~~~~~l~tgs~dg~v~vwd~~~-~~~~~~~--------------------h~~~V~~i~~~--~~~l~s~~~dg~i~vwd 174 (474)
+++++++++..++.|..|+... .+..+.. .......++++ ++.|+.+...+.|..++
T Consensus 28 ~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d 107 (322)
T 2fp8_A 28 STNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVG 107 (322)
T ss_dssp TTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEEC
T ss_pred CCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEe
Confidence 3477788888888899998543 2322210 12357888887 46788777666688887
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEEC-------------
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASW------------- 240 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~------------- 240 (474)
..++......... . .........+++.+ ++++.++-..
T Consensus 108 ~~~g~~~~~~~~~-------------------------~---~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 108 SEGGHATQLATSV-------------------------D---GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp TTCEECEEEESEE-------------------------T---TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCCCEEEEecccC-------------------------C---CCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 6644321110000 0 00123467899999 8876665432
Q ss_pred ----CCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEe-eCCCcEEEEEcccCCCceeeeeeeeeecccccEEE
Q 047728 241 ----DKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTG-SADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTA 314 (474)
Q Consensus 241 ----dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 314 (474)
++.|..||..+++...... .......+++++++ .|+++ ...+.|.+|++............ . ... ...
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~---~~g-P~g 233 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-K---IPN-PGN 233 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-E---CSS-EEE
T ss_pred ccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-e---CCC-CCC
Confidence 3678889987665433222 23445789999998 45544 56688999998743221111111 1 123 788
Q ss_pred EEEcCCCCEEEEEcC----------CCcEEEeecCcccccceeeeec---ceeeEEEE-ecCCEEEEEeCCCcEEEEECC
Q 047728 315 LAISPDAAIVYCGSS----------DGLVNFWERELNLSHGGVLRGH---KLAILCLV-TAGNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 315 l~~~~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~---~~~v~~~~-~~~~~l~sgs~dg~i~iwd~~ 380 (474)
++++++|++.++... .+.|..+|.. +.....+.... ...+.++. .++.++++....+.|..+++.
T Consensus 234 i~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 234 IKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred eEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 999999987666544 4668888865 32222221111 11222222 345555555567888888876
Q ss_pred CCc
Q 047728 381 ENE 383 (474)
Q Consensus 381 ~~~ 383 (474)
...
T Consensus 313 ~~~ 315 (322)
T 2fp8_A 313 KKG 315 (322)
T ss_dssp ---
T ss_pred ccc
Confidence 443
No 255
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.50 E-value=3e-05 Score=77.43 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=26.3
Q ss_pred EecCCEEEEEeCCCeEEEEecCCCCcceeeee
Q 047728 155 VISNEKIFSGHQDGKIRVWKVSSKDASIHKRV 186 (474)
Q Consensus 155 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 186 (474)
++.++.++.++.|+.|.-+|..+++.......
T Consensus 114 a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 114 AIYGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp EEETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred EEECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 45688899999999999999999988765543
No 256
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.50 E-value=1.2e-05 Score=80.18 Aligned_cols=151 Identities=9% Similarity=0.044 Sum_probs=87.3
Q ss_pred EEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-
Q 047728 161 IFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS- 239 (474)
Q Consensus 161 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s- 239 (474)
|+.++.|+.|..+|..+++............ . +.-...++ +. + ..+++++
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~----------------------~-~~~~ssP~----v~-~-g~V~vg~~ 174 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKV----------------------G-STLTIAPY----VV-K-DKVIIGSS 174 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGG----------------------T-CBCCSCCE----EE-T-TEEEECCB
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCc----------------------c-ceeecCCE----EE-C-CEEEEEec
Confidence 8999999999999999998765544321000 0 00001111 11 3 3555554
Q ss_pred -----CCCcEEEEEcCCcceeeeeeecCcc-------------------------------------e-eEEEecCCC-e
Q 047728 240 -----WDKTFKVWRTSDYKCLESVIAHDDA-------------------------------------V-NSIVAGFDG-L 275 (474)
Q Consensus 240 -----~dg~i~iwd~~~~~~~~~~~~~~~~-------------------------------------v-~~v~~~~~~-~ 275 (474)
.++.|+.+|.++++.+..+...... + ..+++.++. +
T Consensus 175 g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~ 254 (599)
T 1w6s_A 175 GAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNL 254 (599)
T ss_dssp CGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTE
T ss_pred ccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCE
Confidence 3799999999999988776542211 0 023444444 6
Q ss_pred EEEeeCC----------------CcEEEEEcccCCCceeeeeeeeeecc--------cccEEEEEEc-CCC---CEEEEE
Q 047728 276 VFTGSAD----------------GTVKVWRRELQGKGTKHFFSQTLLKQ--------ECAVTALAIS-PDA---AIVYCG 327 (474)
Q Consensus 276 l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~~~--------~~~v~~l~~~-~~~---~~l~~~ 327 (474)
++.+..+ +.|..+|.++++.... .....| ..++. +... .++ ..++.+
T Consensus 255 vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~----~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~ 329 (599)
T 1w6s_A 255 IYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG----YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHP 329 (599)
T ss_dssp EEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE----EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEE
T ss_pred EEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeE----eecCCCccccccCCCccEE-EeccccCCcEEEEEEEE
Confidence 6666654 3788888876543211 111111 11222 2222 466 467778
Q ss_pred cCCCcEEEeecCcccccc
Q 047728 328 SSDGLVNFWERELNLSHG 345 (474)
Q Consensus 328 ~~dg~i~v~d~~~~~~~~ 345 (474)
+.+|.++++|.++++.+.
T Consensus 330 ~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 330 DRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp CTTSEEEEEETTTCCEEE
T ss_pred CCCcEEEEEECCCCCEee
Confidence 899999999998876543
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.47 E-value=1.8e-05 Score=68.97 Aligned_cols=180 Identities=11% Similarity=0.036 Sum_probs=115.4
Q ss_pred eeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcce--eEEEecCCCeEEEeeCCCcEEEEEcccCCCceeee
Q 047728 223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAV--NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHF 300 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v--~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 300 (474)
...|.|+ ++.++.+.+.+|.|+++|+++++.+..+ .. ... ..+++..+...++.-.++.+.+||..+.+.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~----- 128 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR----- 128 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE-----
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE-----
Confidence 4688887 3566667778889999999999998887 33 233 335665444555566789999999876543
Q ss_pred eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeec-ceee---EEEEe-cCCEEEEEeCCCcEE
Q 047728 301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGH-KLAI---LCLVT-AGNLVFSGSADMSIC 375 (474)
Q Consensus 301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~~v---~~~~~-~~~~l~sgs~dg~i~ 375 (474)
...+.... .-..++ ++++.|+.+..++.|.++|..+.+....+.... ...+ ..+.+ +|.+.+..-.+..|.
T Consensus 129 -~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 129 -ERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVL 204 (268)
T ss_dssp -EEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEE
T ss_pred -EEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEE
Confidence 11221111 112333 567888888888999999998876655443322 2121 22333 565444444688999
Q ss_pred EEECCCCceEEEEeecC-----------CccceEEEEEeeCCccccccceEEEEEec
Q 047728 376 IWRRKENEHICLSMLTG-----------HSGPVKCLAVEKDDESLSREKRWILYSGS 421 (474)
Q Consensus 376 iwd~~~~~~~~~~~~~~-----------h~~~v~~l~~~~~~~~~~~~~~~~l~s~s 421 (474)
+.|..+++......+.+ -..-.+.||++|++.. +++||-
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r-------lfVTGK 254 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR-------IFMTGK 254 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC-------EEEEET
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE-------EEEeCC
Confidence 99999998543333321 1135689999998763 666664
No 258
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.46 E-value=2.2e-05 Score=79.89 Aligned_cols=267 Identities=11% Similarity=0.066 Sum_probs=140.2
Q ss_pred EEEEE-cCCEEEEeeCCC-----------cEEEEeCCcc----cccc-ccCccCEEEEEe--cCCEEEEEe-CCCeEEEE
Q 047728 114 YSLAA-AGDLLYTGSDSK-----------NIRVWKNQRE----FSGF-KSNSGLVKAIVI--SNEKIFSGH-QDGKIRVW 173 (474)
Q Consensus 114 ~~~~~-~~~~l~tgs~dg-----------~v~vwd~~~~----~~~~-~~h~~~V~~i~~--~~~~l~s~~-~dg~i~vw 173 (474)
.++.+ ++++++.|+.+. .+.+||.... +..+ ..+.....++++ .+..++.|+ .+..+.+|
T Consensus 191 ~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~y 270 (656)
T 1k3i_A 191 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY 270 (656)
T ss_dssp EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred EEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEe
Confidence 34555 688888887543 4788884421 1112 112222323333 467777877 44579999
Q ss_pred ecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-CC-----CcEEEE
Q 047728 174 KVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-WD-----KTFKVW 247 (474)
Q Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~d-----g~i~iw 247 (474)
|..+.+.... ..++ ....-.+++..+++++++.|+ .+ ..+.+|
T Consensus 271 d~~t~~W~~~---~~~~----------------------------~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~y 319 (656)
T 1k3i_A 271 DSSSDSWIPG---PDMQ----------------------------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY 319 (656)
T ss_dssp EGGGTEEEEC---CCCS----------------------------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred cCcCCceeEC---CCCC----------------------------ccccccceEEecCCeEEEEeCcccCCcccccceEe
Confidence 9887643221 1111 011112455567888888888 44 569999
Q ss_pred EcCCcceeeee----eecCcceeEEEecCCC-eEEEeeCC---------CcEEEEEcccCCCceeeeeeeeeec------
Q 047728 248 RTSDYKCLESV----IAHDDAVNSIVAGFDG-LVFTGSAD---------GTVKVWRRELQGKGTKHFFSQTLLK------ 307 (474)
Q Consensus 248 d~~~~~~~~~~----~~~~~~v~~v~~~~~~-~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~------ 307 (474)
|..+.+-...- ......-....+..++ .++.|+.+ ..+..||.....-. . .......
T Consensus 320 d~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~--~-~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 320 SPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV--K-SAGKRQSNRGVAP 396 (656)
T ss_dssp ETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE--E-EEEECEETTEECC
T ss_pred CCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCccee--e-cCCccccccccCC
Confidence 99876533210 0000000001112233 44445444 35677887643311 0 1111100
Q ss_pred ccccEEEEEEcC-CCCEEEEEcCCC-----------cEEEeecCcccccce----eeeecceeeEEEEecCCEEEEEeCC
Q 047728 308 QECAVTALAISP-DAAIVYCGSSDG-----------LVNFWERELNLSHGG----VLRGHKLAILCLVTAGNLVFSGSAD 371 (474)
Q Consensus 308 ~~~~v~~l~~~~-~~~~l~~~~~dg-----------~i~v~d~~~~~~~~~----~~~~~~~~v~~~~~~~~~l~sgs~d 371 (474)
....-.++.+.. +++++++|+.++ .|.+||..+...... ..........++.+++++++.|+.+
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 111234445544 777888887542 677888776532211 1111112223455689999999864
Q ss_pred -----------CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC
Q 047728 372 -----------MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL 422 (474)
Q Consensus 372 -----------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~ 422 (474)
..+.+||..+.+...+..+........+..+.++++ +++.|+.
T Consensus 477 ~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~--------v~v~GG~ 530 (656)
T 1k3i_A 477 RGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGR--------VFNGGGG 530 (656)
T ss_dssp BCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSC--------EEEEECC
T ss_pred cCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcE--------EEecCCC
Confidence 568999998877544333332223334455678888 8888874
No 259
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.41 E-value=2.5e-05 Score=68.88 Aligned_cols=167 Identities=8% Similarity=0.014 Sum_probs=106.5
Q ss_pred ceeeeeeecCc--ceeEEEecCCCeEEEee-C--CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE
Q 047728 253 KCLESVIAHDD--AVNSIVAGFDGLVFTGS-A--DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG 327 (474)
Q Consensus 253 ~~~~~~~~~~~--~v~~v~~~~~~~l~~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 327 (474)
+.+.++. |.. ....+.+++++.|+.++ . ++.|+++|+.+++.... ...........+++.. +...++.
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~-----i~l~~~~fgeGi~~~g-~~lyv~t 82 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENI-----HKMDDSYFGEGLTLLN-EKLYQVV 82 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEE-----EECCTTCCEEEEEEET-TEEEEEE
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEE-----EecCCCcceEEEEEeC-CEEEEEE
Confidence 4455553 443 35789999988555443 2 58999999987653211 1111222233455552 2344445
Q ss_pred cCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCcc---ceEEEEEee
Q 047728 328 SSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSG---PVKCLAVEK 404 (474)
Q Consensus 328 ~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~---~v~~l~~~~ 404 (474)
-.++.+.++|..+.+....+..+ ...-..++++++.++++..++.|.++|..+.+.........+.. .++.+.|.
T Consensus 83 ~~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 83 WLKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp TTCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred ecCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 56789999999987766554434 22335588898888887788999999998877433222222222 36778888
Q ss_pred CCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 405 DDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 405 ~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
++. +++....++.|.+-|..+++.
T Consensus 161 dg~--------lyvn~~~~~~V~vID~~tg~V 184 (266)
T 2iwa_A 161 NGE--------VWANIWQTDCIARISAKDGTL 184 (266)
T ss_dssp TTE--------EEEEETTSSEEEEEETTTCCE
T ss_pred CCE--------EEEecCCCCeEEEEECCCCcE
Confidence 665 666666788999999988854
No 260
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.38 E-value=0.0002 Score=61.85 Aligned_cols=192 Identities=11% Similarity=0.037 Sum_probs=117.7
Q ss_pred CeeEEEecCCCCEEEEEECC--CcEEEEEcCCcceeeeeeecCcce-eEEEecCCCeEEEeeCCCcEEEEEcccCCCcee
Q 047728 222 AISSLSMSEDQNLLYSASWD--KTFKVWRTSDYKCLESVIAHDDAV-NSIVAGFDGLVFTGSADGTVKVWRRELQGKGTK 298 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~v-~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 298 (474)
-...+.|++ +.++.+.+.+ ..|+.+|+.+++.+..+....... ..+++..+......-.++.+.+||..+...
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~--- 97 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP--- 97 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEE---
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE---
Confidence 466899986 4555555554 489999999999998886533321 334554433555566789999999875443
Q ss_pred eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-ccee---eEEEEe-cCCEEEEEeCCCc
Q 047728 299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-HKLA---ILCLVT-AGNLVFSGSADMS 373 (474)
Q Consensus 299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~---v~~~~~-~~~~l~sgs~dg~ 373 (474)
...+..... -..++ +++..|+++..++.|.++|..+......+..+ +... ...+.+ +|...+..-.+..
T Consensus 98 ---~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~ 171 (243)
T 3mbr_X 98 ---RARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSR 171 (243)
T ss_dssp ---EEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTE
T ss_pred ---EEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCe
Confidence 122221111 13343 56777777777899999999887665444332 2111 233444 4554444446789
Q ss_pred EEEEECCCCceEEEEeecC-----------CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 374 ICIWRRKENEHICLSMLTG-----------HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 374 i~iwd~~~~~~~~~~~~~~-----------h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
|.+.|..+++......+.+ -..-.+.|+++|++.. +++||-.= =++|.++
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~-------lfVTGK~w--p~~~~v~ 232 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR-------LFVTGKRW--PMLYEIR 232 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE-------EEEEETTC--SEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE-------EEEECCCC--CcEEEEE
Confidence 9999999998543333321 1135689999998763 56666432 2455543
No 261
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.36 E-value=0.0013 Score=61.95 Aligned_cols=197 Identities=11% Similarity=0.027 Sum_probs=119.7
Q ss_pred cCCeeEEEecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCc
Q 047728 220 FDAISSLSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
...+..++|.+.+..|+.+ ...+.|..+++........+.........+++.+.+ ++++-...+.|.+.++.....
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~- 193 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR- 193 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-
Confidence 3457899999866666555 466889999987655433333333455778888644 455555667788887753221
Q ss_pred eeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-C-CcEEEeecCcccccceeee--ecceeeEEEEecCCEEEEEe-CC
Q 047728 297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-D-GLVNFWERELNLSHGGVLR--GHKLAILCLVTAGNLVFSGS-AD 371 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d-g~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~sgs-~d 371 (474)
.............++++|.+..|+.... . +.|..++++..... .+.. .....-+++++++..|+.+. ..
T Consensus 194 -----~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~~~~~~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 194 -----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-IIADTHLFWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp -----EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred -----EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EEEECCCCCeeeEEEeCCCCEEEEEECCC
Confidence 1112223356789999997766665543 3 67888887654322 1111 12234477887666555554 56
Q ss_pred CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 372 MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 372 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+.|..+|+...... ..+.........|++ ..+. ++++-...+.|..++..++
T Consensus 268 ~~I~~~d~dG~~~~--~~~~~~~~~P~giav-~~~~--------ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 268 HVIERANLDGSHRK--AVISQGLPHPFAITV-FEDS--------LYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp TEEEEECTTSCSCE--EEECSSCSSEEEEEE-ETTE--------EEEEETTTTEEEEEETTTC
T ss_pred CEEEEEeCCCCeeE--EEEECCCCCceEEEE-ECCE--------EEEeeCCCCeEEEEECCCC
Confidence 78999998765432 122223445678888 3444 6677777788888875444
No 262
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.32 E-value=0.002 Score=59.72 Aligned_cols=197 Identities=11% Similarity=0.016 Sum_probs=119.8
Q ss_pred CCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCce
Q 047728 221 DAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~ 297 (474)
..+..++|.+....|+.+. ..+.|..+++........+.........+++.+.+ ++++-...+.|.+.++.....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-- 150 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-- 150 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--
Confidence 3578999998666666554 66889999987655433333333456788888644 555656678899998763321
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEc-CC-CcEEEeecCcccccceee-eecceeeEEEEecCCEEEEEe-CCCc
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGS-SD-GLVNFWERELNLSHGGVL-RGHKLAILCLVTAGNLVFSGS-ADMS 373 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~d-g~i~v~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~sgs-~dg~ 373 (474)
.......-.....++++|.+..|+... .. +.|..++++......... ......-+++++++..|+.+. ..+.
T Consensus 151 ----~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~ 226 (349)
T 3v64_C 151 ----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV 226 (349)
T ss_dssp ----EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred ----EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE
Confidence 111222335678999999666555544 34 678888876543221111 112234477887666665554 5678
Q ss_pred EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 374 ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 374 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
|..+|+....... .+.........+++ ..+. ++++-...+.|..++..++
T Consensus 227 I~~~~~dG~~~~~--~~~~~~~~P~giav-~~~~--------ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 227 IERANLDGSHRKA--VISQGLPHPFAITV-FEDS--------LYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp EEEEETTSCSCEE--EECSSCSSEEEEEE-ETTE--------EEEEETTTTEEEEEETTTC
T ss_pred EEEEeCCCCceEE--EEeCCCCCceEEEE-ECCE--------EEEecCCCCeEEEEEccCC
Confidence 9999987654321 22223445678888 3444 6666667777877774444
No 263
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.32 E-value=1.5e-05 Score=81.17 Aligned_cols=198 Identities=10% Similarity=0.059 Sum_probs=106.1
Q ss_pred eeEEEecCCCCEEEEEEC-CCcEEEEEcCCcceeeeeeecCc-ceeEEEecCCC-eEEEee-CC-----CcEEEEEcccC
Q 047728 223 ISSLSMSEDQNLLYSASW-DKTFKVWRTSDYKCLESVIAHDD-AVNSIVAGFDG-LVFTGS-AD-----GTVKVWRRELQ 293 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~-~v~~v~~~~~~-~l~~~~-~d-----g~i~iwd~~~~ 293 (474)
..++++..++++++.|+. +..+.+||..+.+-...-..+.. .-.+++..+++ +++.|+ .+ ..+.+||....
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 445677788999999884 46899999887654332222221 22344555577 677777 34 46899998643
Q ss_pred CCceeeeee---eeeecccccEEEEEEcCCCCEEEEEcCCC---------cEEEeecCcccccceeeeecc---------
Q 047728 294 GKGTKHFFS---QTLLKQECAVTALAISPDAAIVYCGSSDG---------LVNFWERELNLSHGGVLRGHK--------- 352 (474)
Q Consensus 294 ~~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---------~i~v~d~~~~~~~~~~~~~~~--------- 352 (474)
.- ..... ........ ...+..++..++.++.+| .+..||..+..... ......
T Consensus 325 ~W--~~~~~~~~~p~~~~~~---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~-~~~~~~~~~~~~~~~ 398 (656)
T 1k3i_A 325 TW--TSLPNAKVNPMLTADK---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK-SAGKRQSNRGVAPDA 398 (656)
T ss_dssp EE--EEETTSCSGGGCCCCT---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE-EEEECEETTEECCCC
T ss_pred cc--eeCCCccccccccccc---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee-cCCccccccccCCCC
Confidence 21 10000 00000000 011223445555554443 46778876654221 111111
Q ss_pred --eeeEEEE-ecCCEEEEEeCCC-----------cEEEEECCCCceEEEEeecCCccc-eEEEEEeeCCccccccceEEE
Q 047728 353 --LAILCLV-TAGNLVFSGSADM-----------SICIWRRKENEHICLSMLTGHSGP-VKCLAVEKDDESLSREKRWIL 417 (474)
Q Consensus 353 --~~v~~~~-~~~~~l~sgs~dg-----------~i~iwd~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~~~~~~~~l 417 (474)
...+.+. .++++++.|+.++ .|.+||..+.....+..-...... -.+++..|+++ ++
T Consensus 399 ~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~--------i~ 470 (656)
T 1k3i_A 399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS--------TF 470 (656)
T ss_dssp BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC--------EE
T ss_pred CCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC--------EE
Confidence 1122222 3677888887543 688888887764422200112222 23455677888 88
Q ss_pred EEecCC-----------CcEEEEEccCC
Q 047728 418 YSGSLD-----------KSVKMWRVSEQ 434 (474)
Q Consensus 418 ~s~s~D-----------g~i~vw~~~~~ 434 (474)
+.|+.+ ..+.+||..+.
T Consensus 471 v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 471 ITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp EECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred EECCcccCcCcCCCCcccceEEEcCCCC
Confidence 888754 46899998764
No 264
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.32 E-value=0.001 Score=60.44 Aligned_cols=182 Identities=12% Similarity=0.008 Sum_probs=102.0
Q ss_pred CeeEEEecCCCCEEEEEECCC--cEEEEEcCCcceeeeeee-cCcceeEEEecCCCeEEEe-eCCCcEEEEEcccCCCce
Q 047728 222 AISSLSMSEDQNLLYSASWDK--TFKVWRTSDYKCLESVIA-HDDAVNSIVAGFDGLVFTG-SADGTVKVWRRELQGKGT 297 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~-~~~~v~~v~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 297 (474)
....+++.++++++++..... .|..+|..+++....... .......++..+++.+++. ..++.|..+|...... .
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~-~ 151 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG-S 151 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE-E
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE-e
Confidence 366889999998665554332 477778777765432221 1223345555556644444 4588888888653210 0
Q ss_pred eeeeee-----eeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCc-ccc-cceee-eecceeeEEEEecCCEEEEE
Q 047728 298 KHFFSQ-----TLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWEREL-NLS-HGGVL-RGHKLAILCLVTAGNLVFSG 368 (474)
Q Consensus 298 ~~~~~~-----~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~-~~~-~~~~~-~~~~~~v~~~~~~~~~l~sg 368 (474)
...... .....-.....+ +++++.|+++ ...+.|..|++.. +.. ....+ ......-+++.++|+++++.
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~ 229 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT 229 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEEC
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEe
Confidence 000000 000111234455 7788766555 4567899999874 211 11111 11123347788889887777
Q ss_pred eCCCcEEEEECCCCceEEEEeecCCccceEEEEEe---eCCc
Q 047728 369 SADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE---KDDE 407 (474)
Q Consensus 369 s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~---~~~~ 407 (474)
...+.|.++|.. ++...+..+.......++++|. |++.
T Consensus 230 ~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~ 270 (306)
T 2p4o_A 230 HIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCT 270 (306)
T ss_dssp BTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred CCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCC
Confidence 778899999976 4432232333333568999998 7766
No 265
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.30 E-value=0.00071 Score=59.27 Aligned_cols=201 Identities=12% Similarity=0.032 Sum_probs=124.2
Q ss_pred eccCCeeEEEecCCCCEEEE-EECCCcEEEEEcCCcceeeeeeec-CcceeEEEecCCCeE-EEeeCCCcEEEEEcccCC
Q 047728 218 KHFDAISSLSMSEDQNLLYS-ASWDKTFKVWRTSDYKCLESVIAH-DDAVNSIVAGFDGLV-FTGSADGTVKVWRRELQG 294 (474)
Q Consensus 218 ~h~~~V~~l~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~l-~~~~~dg~i~iwd~~~~~ 294 (474)
+-...+..++|+|+++.|++ ...++.|...|.. ++.+..+... ......|++.+++.+ ++.-.++.+.++++....
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 34567999999997766654 6678889999987 8877776432 246778888888844 444466788898876544
Q ss_pred Cceeeeeee-e--eecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc--cccceeee---------ecceeeEEEEe
Q 047728 295 KGTKHFFSQ-T--LLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN--LSHGGVLR---------GHKLAILCLVT 360 (474)
Q Consensus 295 ~~~~~~~~~-~--~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~---------~~~~~v~~~~~ 360 (474)
......... . ..........++|+|.++.|+++.......+|..+.. ........ -.....+++.+
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ 182 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence 311111111 1 1234556799999999988887776655556555410 00011111 11223455666
Q ss_pred c-CCEEEEEeCCCcEEEEECCCCceEEEEeec-CCc------cceEEEEEeeCCccccccceEEEEEecCCCcEEEE
Q 047728 361 A-GNLVFSGSADMSICIWRRKENEHICLSMLT-GHS------GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMW 429 (474)
Q Consensus 361 ~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-~h~------~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw 429 (474)
. +.+++.......+.++|.... ......+. +.. ..--.|+|.+++. +.++ ++-+.+.++
T Consensus 183 ~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~--------lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 183 QKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN--------IYIV-SEPNRFYRF 249 (255)
T ss_dssp TTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC--------EEEE-ETTTEEEEE
T ss_pred CCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC--------EEEE-cCCceEEEE
Confidence 4 556666777788999998755 33344444 221 2568999999997 4444 566644444
No 266
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.27 E-value=0.0012 Score=60.06 Aligned_cols=236 Identities=11% Similarity=0.063 Sum_probs=122.2
Q ss_pred CcceeeeeeeeecCcEEEEEEc--CCEEEEeeCCCcEEEEeCCccccccccCccCEEEEEec-CCEEEEEe-C-CC-eEE
Q 047728 98 SPNVLIGSLVREEGHIYSLAAA--GDLLYTGSDSKNIRVWKNQREFSGFKSNSGLVKAIVIS-NEKIFSGH-Q-DG-KIR 171 (474)
Q Consensus 98 ~~~~~~~~l~~h~~~i~~~~~~--~~~l~tgs~dg~v~vwd~~~~~~~~~~h~~~V~~i~~~-~~~l~s~~-~-dg-~i~ 171 (474)
.+.+.+..+... .....++++ |+++++-..++.|..||.................+++. ...|+.+. . ++ .|.
T Consensus 20 ~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 20 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 344555555322 335556664 77777776788999998554333332334567888887 22344444 2 22 355
Q ss_pred EEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC
Q 047728 172 VWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD 251 (474)
Q Consensus 172 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~ 251 (474)
.++..+++....... + .......++..+++..+++-..++.|.++|..+
T Consensus 99 ~~d~~~g~~~~~~~~---~----------------------------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 99 SLVKSDGTVETLLTL---P----------------------------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp EEECTTSCEEEEEEC---T----------------------------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred EEcCCCCeEEEEEeC---C----------------------------CccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence 555555543211110 0 111123344444444444444578899999765
Q ss_pred cce-eeeee---------ecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC
Q 047728 252 YKC-LESVI---------AHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP 319 (474)
Q Consensus 252 ~~~-~~~~~---------~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 319 (474)
++. +.... ..-...+.+ ++++ ++++-...+.|..|++......... ..+ ........+++++
T Consensus 148 ~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~---~~~-~~~~~P~gi~vd~ 221 (306)
T 2p4o_A 148 PSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP---EIF-VEQTNIDDFAFDV 221 (306)
T ss_dssp TEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC---EEE-EESCCCSSEEEBT
T ss_pred CcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc---EEE-eccCCCCCeEECC
Confidence 421 11000 111233455 6666 4555566788999998742111000 111 1113456789999
Q ss_pred CCCEEEEEcCCCcEEEeecCcccccc-eeeee-cceeeEEEE---ecCCEEEEEeCC
Q 047728 320 DAAIVYCGSSDGLVNFWERELNLSHG-GVLRG-HKLAILCLV---TAGNLVFSGSAD 371 (474)
Q Consensus 320 ~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~-~~~~v~~~~---~~~~~l~sgs~d 371 (474)
+|+++++....+.|.++|........ ....+ .....+++. ++++.|+..+..
T Consensus 222 dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 222 EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 99887777778899999976322111 11111 222334454 566666665543
No 267
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.25 E-value=0.00013 Score=63.59 Aligned_cols=191 Identities=9% Similarity=0.114 Sum_probs=118.0
Q ss_pred eeeeeeeeecCc--EEEEEEcCC-EEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEecCCEEEE-EeCCCeEEEEe
Q 047728 101 VLIGSLVREEGH--IYSLAAAGD-LLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVISNEKIFS-GHQDGKIRVWK 174 (474)
Q Consensus 101 ~~~~~l~~h~~~--i~~~~~~~~-~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~~~~l~s-~~~dg~i~vwd 174 (474)
+.++++ .|... ...+.++++ +.++.+.+|.|+++|.. +.+........--..+++.++.|+. .-.++.+.+||
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred EEEEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence 455555 45433 567888866 45566778889999854 3333331111122446777665554 45788999999
Q ss_pred cCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728 175 VSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC 254 (474)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 254 (474)
..+.+........ ..=..++ ++++.|+.+..++.|.++|..+.+.
T Consensus 123 ~~Tl~~~~ti~~~---------------------------------~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v 167 (268)
T 3nok_A 123 GMPPQRERTTRYS---------------------------------GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFAL 167 (268)
T ss_dssp TTTTEEEEEEECS---------------------------------SCCCCEE--EETTEEEEECSSSEEEEECTTTCCE
T ss_pred CCcCcEEEEEeCC---------------------------------CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeE
Confidence 9988765443321 1112343 5677888877789999999999998
Q ss_pred eeeeeec--Cc---ceeEEEecCCCeEEEee-CCCcEEEEEcccCCCceeeeeeee-------eecccccEEEEEEcCCC
Q 047728 255 LESVIAH--DD---AVNSIVAGFDGLVFTGS-ADGTVKVWRRELQGKGTKHFFSQT-------LLKQECAVTALAISPDA 321 (474)
Q Consensus 255 ~~~~~~~--~~---~v~~v~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~v~~l~~~~~~ 321 (474)
+..+... .. .++.+.|. +|.+++.. .+..|.+.|.+++.......+... ........+.|+++|++
T Consensus 168 ~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~ 246 (268)
T 3nok_A 168 VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGS 246 (268)
T ss_dssp EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTT
T ss_pred EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCC
Confidence 8887642 22 34667776 66555544 578899999876553222211100 11123467899999976
Q ss_pred CEEEEEc
Q 047728 322 AIVYCGS 328 (474)
Q Consensus 322 ~~l~~~~ 328 (474)
+.|++.+
T Consensus 247 ~rlfVTG 253 (268)
T 3nok_A 247 GRIFMTG 253 (268)
T ss_dssp CCEEEEE
T ss_pred CEEEEeC
Confidence 6555544
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=0.0005 Score=65.87 Aligned_cols=197 Identities=7% Similarity=0.061 Sum_probs=108.3
Q ss_pred cCCeeEEEecCCCCEEEEEECC-C----cEEEEEcCCccee--eeeeecCcceeEEEecC-CCe-EEEeeCCCcEEEEEc
Q 047728 220 FDAISSLSMSEDQNLLYSASWD-K----TFKVWRTSDYKCL--ESVIAHDDAVNSIVAGF-DGL-VFTGSADGTVKVWRR 290 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~d-g----~i~iwd~~~~~~~--~~~~~~~~~v~~v~~~~-~~~-l~~~~~dg~i~iwd~ 290 (474)
......|+|++++++|+.+... + .+.+++ ..+... ..+.. ......+++.| ++. +++-..++.|..++.
T Consensus 178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~ 255 (430)
T 3tc9_A 178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDF 255 (430)
T ss_dssp CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence 3457799999999977766542 1 233344 333322 23322 34467888999 664 445556788999987
Q ss_pred ccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEE-EcCCCcEEEeecCcc--cc-cceeeeec---------------
Q 047728 291 ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYC-GSSDGLVNFWERELN--LS-HGGVLRGH--------------- 351 (474)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~v~d~~~~--~~-~~~~~~~~--------------- 351 (474)
..... . .............++|+|++++|++ -...+.|..++.+.. .. ....+.+.
T Consensus 256 ~~~~~--~---~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~ 330 (430)
T 3tc9_A 256 TTQET--T---PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKAR 330 (430)
T ss_dssp TTTEE--E---EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCB
T ss_pred CCCcE--E---EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceE
Confidence 63211 0 1111122245778999999995554 456778999876532 10 00111110
Q ss_pred ---ceeeEEEE--------ecCCEEEEEeCCCcEEEEECCCCceEEEEee-----cC----------CccceEEEEEeeC
Q 047728 352 ---KLAILCLV--------TAGNLVFSGSADMSICIWRRKENEHICLSML-----TG----------HSGPVKCLAVEKD 405 (474)
Q Consensus 352 ---~~~v~~~~--------~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-----~~----------h~~~v~~l~~~~~ 405 (474)
....+++. .++.+.++=...+.|+.++. .+....+.-. .+ .-.....|++.++
T Consensus 331 ~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~ 409 (430)
T 3tc9_A 331 MHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEE 409 (430)
T ss_dssp BSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETT
T ss_pred eCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECC
Confidence 01123332 22445555556678888884 3432211111 01 0114688999984
Q ss_pred -CccccccceEEEEEecCCCcEEEEEcc
Q 047728 406 -DESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 406 -~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
+. ++++-.....|+.++++
T Consensus 410 ~g~--------lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 410 REC--------FFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTE--------EEEEEGGGTEEEEEEEC
T ss_pred CCE--------EEEEECCCCeEEEEccC
Confidence 55 66666667788887764
No 269
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.22 E-value=0.0031 Score=57.56 Aligned_cols=200 Identities=10% Similarity=0.037 Sum_probs=118.3
Q ss_pred cCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCC---cceeee-eeecCcceeEEEecCC-C-eEEEeeCCCcEEEEEccc
Q 047728 220 FDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSD---YKCLES-VIAHDDAVNSIVAGFD-G-LVFTGSADGTVKVWRREL 292 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~---~~~~~~-~~~~~~~v~~v~~~~~-~-~l~~~~~dg~i~iwd~~~ 292 (474)
...+..++|.+.++.|+.+. .++.|..+++.. +..... +...-.....+++.+. + ++++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34577999998766666554 568899999875 122222 2222245678888754 4 445556678899998763
Q ss_pred CCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC--CcEEEeecCcccccceeee--ecceeeEEEEecCCEEEEE
Q 047728 293 QGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD--GLVNFWERELNLSHGGVLR--GHKLAILCLVTAGNLVFSG 368 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--g~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~sg 368 (474)
... .............++++|.+..|+.+... +.|..++++..... .+.. .....-+++++++..|+.+
T Consensus 109 ~~~------~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~-~~~~~~~~~P~gla~d~~~~~lY~~ 181 (316)
T 1ijq_A 109 VKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYWV 181 (316)
T ss_dssp SSE------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSSCSCEEEEEEETTTTEEEEE
T ss_pred Cce------EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE-EEEECCCCCceEEEEeccCCEEEEE
Confidence 211 11112233567899999976666555443 67888887643221 1111 1223347777776666655
Q ss_pred e-CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 369 S-ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 369 s-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
. ..+.|..+|+.......+............+++. .+. ++++-...+.|..++..++.
T Consensus 182 D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~--------ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDK--------VFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTE--------EEEEETTTTEEEEEETTTCC
T ss_pred ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCE--------EEEEECCCCeEEEEeCCCCc
Confidence 5 5679999999765433222222223345778875 344 66676777888888865543
No 270
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.20 E-value=0.00036 Score=60.86 Aligned_cols=181 Identities=12% Similarity=0.054 Sum_probs=109.9
Q ss_pred EEEEEecCCEE-EEEeCCC--eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEE
Q 047728 151 VKAIVISNEKI-FSGHQDG--KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLS 227 (474)
Q Consensus 151 V~~i~~~~~~l-~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 227 (474)
...+.|+++.| .+.+.+| .|+++|+.+++........ .......
T Consensus 45 tqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---------------------------------~~~FgeG 91 (262)
T 3nol_A 45 TEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELG---------------------------------KRYFGEG 91 (262)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECC---------------------------------TTCCEEE
T ss_pred cceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecC---------------------------------CccceeE
Confidence 46777775544 4555655 8999999998765443321 1121211
Q ss_pred ecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeeeee
Q 047728 228 MSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQTL 305 (474)
Q Consensus 228 ~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 305 (474)
+.++++.|+... .++.+.+||..+.+.+.++.... .-..++ +++ .|+....++.|.++|..+.+.... .....
T Consensus 92 it~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~--I~V~~ 166 (262)
T 3nol_A 92 ISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRT--ITVTA 166 (262)
T ss_dssp EEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEE--EECEE
T ss_pred EEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEE--EEecc
Confidence 223355666655 57899999999999999987533 223444 345 666666678899999876543111 11111
Q ss_pred eccc-ccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee-------------cceeeEEEEecCCEEEEEeC
Q 047728 306 LKQE-CAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG-------------HKLAILCLVTAGNLVFSGSA 370 (474)
Q Consensus 306 ~~~~-~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~l~sgs~ 370 (474)
.+.. ..++.+.|. +|...+..-.+..|.+.|.++++....+... ....-+++.++++.|+..+.
T Consensus 167 ~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 167 HGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 1111 334557776 6766665657889999999888665443221 11133777777777776664
No 271
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.18 E-value=0.0049 Score=58.32 Aligned_cols=201 Identities=10% Similarity=0.026 Sum_probs=121.3
Q ss_pred ccCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCc----ceeeeeeecCcceeEEEecCC-C-eEEEeeCCCcEEEEEcc
Q 047728 219 HFDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDY----KCLESVIAHDDAVNSIVAGFD-G-LVFTGSADGTVKVWRRE 291 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~----~~~~~~~~~~~~v~~v~~~~~-~-~l~~~~~dg~i~iwd~~ 291 (474)
....+..|+|++.+..|+.+. ..+.|+.+++... .....+.........+++.+. + ++++-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 345678999998666666654 5678888888652 222222223445678888863 4 55555667888888876
Q ss_pred cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC--CCcEEEeecCcccccceeeee--cceeeEEEEecCCEEEE
Q 047728 292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS--DGLVNFWERELNLSHGGVLRG--HKLAILCLVTAGNLVFS 367 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s 367 (474)
.... .............|+++|.+..|+.... .+.|...+++..... .+... ....-+++++++..|+.
T Consensus 190 g~~~------~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~-~~~~~~l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 190 GVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp TCSE------EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE-EEECSSCSCEEEEEEETTTTEEEE
T ss_pred CCce------EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE-EEEECCCCceEEEEEEeCCCEEEE
Confidence 3221 1112223445789999997666665543 367888888754332 12111 22344777776776666
Q ss_pred Ee-CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 368 GS-ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 368 gs-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
+. ..+.|..+|+.......+...........+|++. .+. ++++-...+.|..++..+++
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~--------lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDK--------VFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTE--------EEEEESSSCSEEEEESSSCC
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCE--------EEEecCCCCeEEEEEcCCCC
Confidence 65 5678999999765533232222223445677773 333 66677777888888865553
No 272
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.15 E-value=0.0046 Score=56.76 Aligned_cols=268 Identities=7% Similarity=0.013 Sum_probs=135.2
Q ss_pred cCcEEEEEEc--CCEEEEeeCCCcEEEEe-CCcccccc----ccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcce
Q 047728 110 EGHIYSLAAA--GDLLYTGSDSKNIRVWK-NQREFSGF----KSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASI 182 (474)
Q Consensus 110 ~~~i~~~~~~--~~~l~tgs~dg~v~vwd-~~~~~~~~----~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 182 (474)
...+.++.+. +..++ ++..|.|.... -++.-... ......+.+|.+.++.++.++.+|.|.. ..+.++. .
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~t-W 111 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQS-W 111 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE-ESSTTSS-C
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE-ECCCCCC-c
Confidence 3468888885 45566 45577654332 22211111 1234468888888766666677774433 2232221 1
Q ss_pred eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeee-eec
Q 047728 183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESV-IAH 261 (474)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~ 261 (474)
...... ..+...+..+.+.+++..++ ++.++.|.. ....++.-..+ ...
T Consensus 112 ~~~~~~----------------------------~~~~~~~~~i~~~~~~~~~~-~~~~g~v~~-S~DgG~tW~~~~~~~ 161 (327)
T 2xbg_A 112 SQIPLD----------------------------PKLPGSPRLIKALGNGSAEM-ITNVGAIYR-TKDSGKNWQALVQEA 161 (327)
T ss_dssp EECCCC----------------------------TTCSSCEEEEEEEETTEEEE-EETTCCEEE-ESSTTSSEEEEECSC
T ss_pred eECccc----------------------------cCCCCCeEEEEEECCCCEEE-EeCCccEEE-EcCCCCCCEEeecCC
Confidence 110000 00223356677666665554 445665432 12223322222 234
Q ss_pred CcceeEEEecCCCeEEEeeCCCcEEE-EEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCc
Q 047728 262 DDAVNSIVAGFDGLVFTGSADGTVKV-WRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWEREL 340 (474)
Q Consensus 262 ~~~v~~v~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~ 340 (474)
...+..+.+.+++.+++.+.+|.+.. +|- ...... .........+..+.+.+++..+++ +.+|.+++.+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~----~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~ 234 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWE----PHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDN 234 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCE----EEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTE
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCcee----ECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCC
Confidence 45788899998885555555665443 221 011111 111234567889999998876654 4678777764222
Q ss_pred ccccceeeee---cceeeEEEE--ecCCEEEEEeCCCcEEEEECCCCceEEEEeec---CCccceEEEEEeeCCcccccc
Q 047728 341 NLSHGGVLRG---HKLAILCLV--TAGNLVFSGSADMSICIWRRKENEHICLSMLT---GHSGPVKCLAVEKDDESLSRE 412 (474)
Q Consensus 341 ~~~~~~~~~~---~~~~v~~~~--~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~~~~ 412 (474)
+........+ ....+.++. +++.+++++ .+|.| ++..+.++.- ..+. .....+.++.|.+++.
T Consensus 235 G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW--~~~~~~~~~~~~~~~v~~~~~~~----- 305 (327)
T 2xbg_A 235 SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTW--QQDVDVKKVPSNFYKILFFSPDQ----- 305 (327)
T ss_dssp EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSC--EECGGGTTSSSCCCEEEEEETTE-----
T ss_pred CCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCccc--EEcCccCCCCCCeEEEEEECCCc-----
Confidence 2211111111 112344444 345555554 46766 4445544321 1222 2345688899986654
Q ss_pred ceEEEEEecCCCcEEEEE
Q 047728 413 KRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 413 ~~~~l~s~s~Dg~i~vw~ 430 (474)
++.++.+|.|.-++
T Consensus 306 ----~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 306 ----GFILGQKGILLRYV 319 (327)
T ss_dssp ----EEEECSTTEEEEEC
T ss_pred ----eEEEcCCceEEEEc
Confidence 66667789766554
No 273
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.11 E-value=0.00034 Score=72.28 Aligned_cols=193 Identities=15% Similarity=0.096 Sum_probs=108.6
Q ss_pred CeeEEEec-CCCCEEEEEEC-CC----cEEEEEcCCc-ceeee-eeecCcceeEEEecCCC-eEEEeeCC-----CcEEE
Q 047728 222 AISSLSMS-EDQNLLYSASW-DK----TFKVWRTSDY-KCLES-VIAHDDAVNSIVAGFDG-LVFTGSAD-----GTVKV 287 (474)
Q Consensus 222 ~V~~l~~~-~~~~~l~s~s~-dg----~i~iwd~~~~-~~~~~-~~~~~~~v~~v~~~~~~-~l~~~~~d-----g~i~i 287 (474)
.+...+|+ |||++|+-+.. +| +|+++|+.++ +.+.. +. .....+.|+||+ .|+....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57789999 99998875543 33 4999999998 63321 21 124568899998 55555554 24666
Q ss_pred EEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC---CCcEEEeecCcccc-c--ceeeeecceeeEEEE-e
Q 047728 288 WRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS---DGLVNFWERELNLS-H--GGVLRGHKLAILCLV-T 360 (474)
Q Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---dg~i~v~d~~~~~~-~--~~~~~~~~~~v~~~~-~ 360 (474)
+++........ .... .........+.|+||+++|+.... ...|.++|+.++.. . ..+............ .
T Consensus 252 ~~lgt~~~~~~--lv~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~ 328 (751)
T 2xe4_A 252 HVMGKLQSEDV--CLYE-EHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH 328 (751)
T ss_dssp EETTSCGGGCE--EEEE-CCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE
T ss_pred EECCCCchhcE--EEEe-cCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee
Confidence 66654321111 1111 122334678899999998887653 34688888876521 1 222222333334443 3
Q ss_pred cCCEEEEEe-CC----CcEEEEECCC-CceEEEEe-ecCCcc--ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEc
Q 047728 361 AGNLVFSGS-AD----MSICIWRRKE-NEHICLSM-LTGHSG--PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRV 431 (474)
Q Consensus 361 ~~~~l~sgs-~d----g~i~iwd~~~-~~~~~~~~-~~~h~~--~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~ 431 (474)
.++.|+..+ .+ ..|..+|+.+ .+.. . +..+.. .+..+.+. +.. ++++...|+..+||-+
T Consensus 329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~---~~li~~~~~~~l~~~~~~--~~~-------lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDWS---HVLVDHSEDVFMESIAVR--SNY-------LVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TTTEEEEEECTTTCTTCEEEEEETTSTTCCC---CEEECCCSSEEEEEEEEC--SSE-------EEEEEEETTEEEEEEE
T ss_pred eCCEEEEEeCCCCCCCcEEEEEcCCCcccce---eeEECCCCCcEEEEEEEE--CCE-------EEEEEEeCCEEEEEEE
Confidence 366555444 33 3566777764 2211 2 222333 34455554 332 6778888887666654
Q ss_pred c
Q 047728 432 S 432 (474)
Q Consensus 432 ~ 432 (474)
.
T Consensus 397 d 397 (751)
T 2xe4_A 397 M 397 (751)
T ss_dssp E
T ss_pred e
Confidence 3
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.09 E-value=0.0058 Score=56.63 Aligned_cols=213 Identities=11% Similarity=0.031 Sum_probs=117.6
Q ss_pred cEEEEeCCc-cccccccCccCEEEEEec--CCEEEEE-eCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeE
Q 047728 131 NIRVWKNQR-EFSGFKSNSGLVKAIVIS--NEKIFSG-HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYI 206 (474)
Q Consensus 131 ~v~vwd~~~-~~~~~~~h~~~V~~i~~~--~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (474)
.|+..+... ....+........+++|+ ++.|+.+ ...+.|..++++........
T Consensus 54 ~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~---------------------- 111 (349)
T 3v64_C 54 DIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV---------------------- 111 (349)
T ss_dssp CEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----------------------
T ss_pred ceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE----------------------
Confidence 466665432 222222233457788887 4555544 46678888888765422110
Q ss_pred EEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eE-EEeeCC-
Q 047728 207 EVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LV-FTGSAD- 282 (474)
Q Consensus 207 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l-~~~~~d- 282 (474)
.........+++.+.+..|+ +-...+.|.+.++........+...-.....+++.|.+ .| ++-...
T Consensus 112 ----------~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~ 181 (349)
T 3v64_C 112 ----------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT 181 (349)
T ss_dssp ----------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSS
T ss_pred ----------eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCC
Confidence 00123456888887555554 44456789999986543333333333567899999854 44 444444
Q ss_pred CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccccceeeeecce--eeEEEE
Q 047728 283 GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLSHGGVLRGHKL--AILCLV 359 (474)
Q Consensus 283 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~--~v~~~~ 359 (474)
+.|..+++..... .......-.....|+++|++..|+.+ ...+.|..+|++..... .+...... .-+++
T Consensus 182 ~~I~r~~~dG~~~------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~-~~~~~~~~~P~giav- 253 (349)
T 3v64_C 182 PRIEASSMDGSGR------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVISQGLPHPFAITV- 253 (349)
T ss_dssp CEEEEEETTSCSC------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEE-
T ss_pred CEEEEEeCCCCCc------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE-EEEeCCCCCceEEEE-
Confidence 6777777653221 11111233457899999876666655 45678999998754321 12211111 12333
Q ss_pred ecCCEEEEEeCCCcEEEEECCCCc
Q 047728 360 TAGNLVFSGSADMSICIWRRKENE 383 (474)
Q Consensus 360 ~~~~~l~sgs~dg~i~iwd~~~~~ 383 (474)
..+.++++-...+.|..++..+++
T Consensus 254 ~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 254 FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp ETTEEEEEETTTTEEEEEETTTCC
T ss_pred ECCEEEEecCCCCeEEEEEccCCC
Confidence 334444555566778877754444
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.02 E-value=0.0035 Score=54.83 Aligned_cols=201 Identities=8% Similarity=0.053 Sum_probs=115.7
Q ss_pred cCccCEEEEEec--CCEEE-EEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCC
Q 047728 146 SNSGLVKAIVIS--NEKIF-SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDA 222 (474)
Q Consensus 146 ~h~~~V~~i~~~--~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 222 (474)
+-...+..++++ ++.|+ +...++.|...|.. ++........ -...
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~-------------------------------g~~D 71 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD-------------------------------FVKD 71 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS-------------------------------SCSS
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC-------------------------------CCCC
Confidence 344568888887 34444 46677777777776 4433222111 1134
Q ss_pred eeEEEecCCCCEEEEEECCCcEEEEEcCCccee---eeee------ecCcceeEEEecCCC-eEEEeeCCCcEEEEEccc
Q 047728 223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL---ESVI------AHDDAVNSIVAGFDG-LVFTGSADGTVKVWRREL 292 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~------~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~ 292 (474)
...|++.+++.++++.-.++.+.++++.....+ .... ........+++.+++ .|+++.......+|.+..
T Consensus 72 ~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g 151 (255)
T 3qqz_A 72 LETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG 151 (255)
T ss_dssp EEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred hHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc
Confidence 667888888776666556778888887654322 2221 123345899999988 777777766667776651
Q ss_pred CCCceeeeeeee----eecccccEEEEEEcCC-CCEEEEEcCCCcEEEeecCcccccceeee-ec--------ceeeEEE
Q 047728 293 QGKGTKHFFSQT----LLKQECAVTALAISPD-AAIVYCGSSDGLVNFWERELNLSHGGVLR-GH--------KLAILCL 358 (474)
Q Consensus 293 ~~~~~~~~~~~~----~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~--------~~~v~~~ 358 (474)
............ .......+..++++|. +++++.......+.++|..........+. +. ...-+++
T Consensus 152 ~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~ 231 (255)
T 3qqz_A 152 LLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAM 231 (255)
T ss_dssp TTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEE
T ss_pred cccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEE
Confidence 111000011100 0112345789999995 45566666777888899775522211222 11 3345888
Q ss_pred EecCCEEEEEeCCCcEEEEEC
Q 047728 359 VTAGNLVFSGSADMSICIWRR 379 (474)
Q Consensus 359 ~~~~~~l~sgs~dg~i~iwd~ 379 (474)
.++|++.++ ++-+.++.|..
T Consensus 232 d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 232 DASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp CTTCCEEEE-ETTTEEEEEEC
T ss_pred CCCCCEEEE-cCCceEEEEEe
Confidence 888985544 66666666644
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.01 E-value=0.0054 Score=57.72 Aligned_cols=222 Identities=11% Similarity=0.025 Sum_probs=122.1
Q ss_pred EEEEeeCCCcEEEEeCCc-cccccccCccCEEEEEec--CCEEEEE-eCCCeEEEEecCCCCcceeeeecccCccceeee
Q 047728 122 LLYTGSDSKNIRVWKNQR-EFSGFKSNSGLVKAIVIS--NEKIFSG-HQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIK 197 (474)
Q Consensus 122 ~l~tgs~dg~v~vwd~~~-~~~~~~~h~~~V~~i~~~--~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 197 (474)
+|+.+. ...|+..+... ....+.........++|+ ++.|+.+ ...+.|..++++........
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~------------- 154 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV------------- 154 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-------------
T ss_pred eeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-------------
Confidence 444443 34577777542 233333334557888887 4555544 46678888888765421110
Q ss_pred eecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE-EECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-e
Q 047728 198 CSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS-ASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-L 275 (474)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~ 275 (474)
.........+++.+.+..|+. -...+.|.+.++........+...-.....+++.|.+ .
T Consensus 155 -------------------~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ 215 (386)
T 3v65_B 155 -------------------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT 215 (386)
T ss_dssp -------------------CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred -------------------eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCe
Confidence 001223457888875555544 4456788888876543333333333567899999865 4
Q ss_pred EEEee-CC-CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccccceeeeecc
Q 047728 276 VFTGS-AD-GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLSHGGVLRGHK 352 (474)
Q Consensus 276 l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~ 352 (474)
|+... .. +.|..+++..... .......-.....|+++|++..|+.+ ...+.|..+|+...... .+.....
T Consensus 216 ly~td~~~~~~I~r~~~dG~~~------~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~ 288 (386)
T 3v65_B 216 IYWTDWGNTPRIEASSMDGSGR------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVISQGL 288 (386)
T ss_dssp EEEEECSSSCEEEEEETTSCSC------EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE-EEECSSC
T ss_pred EEEeccCCCCEEEEEeCCCCCc------EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE-EEEECCC
Confidence 44443 33 6677777653221 11111223457899999866666555 45678999998754322 1221111
Q ss_pred eeeEEEE-ecCCEEEEEeCCCcEEEEECCCCc
Q 047728 353 LAILCLV-TAGNLVFSGSADMSICIWRRKENE 383 (474)
Q Consensus 353 ~~v~~~~-~~~~~l~sgs~dg~i~iwd~~~~~ 383 (474)
..-..+. ..+.++++-...+.|..++..+++
T Consensus 289 ~~P~giav~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 289 PHPFAITVFEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp SSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCceEEEEECCEEEEeeCCCCeEEEEECCCCc
Confidence 1122222 344455555567788888855554
No 277
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.01 E-value=0.0025 Score=55.01 Aligned_cols=182 Identities=5% Similarity=-0.041 Sum_probs=108.3
Q ss_pred cCEEEEEecCCEEEEE-eCC--CeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728 149 GLVKAIVISNEKIFSG-HQD--GKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS 225 (474)
Q Consensus 149 ~~V~~i~~~~~~l~s~-~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 225 (474)
.-...+.|+++.|+.+ +.+ ..|+++|+.+++.......... .--..
T Consensus 21 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-------------------------------~fgeG 69 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-------------------------------YFGAG 69 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-------------------------------CCEEE
T ss_pred cccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-------------------------------cceeE
Confidence 4467888886655544 443 3899999999877644432210 00112
Q ss_pred EEecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCceeeeeee
Q 047728 226 LSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKGTKHFFSQ 303 (474)
Q Consensus 226 l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 303 (474)
+++ .++.|+.. -.++.+.+||..+.+.+.++..... -..++. ++ .|+.+..++.|.++|..+....... ..
T Consensus 70 i~~--~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~-Gwglt~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I--~V 142 (243)
T 3mbr_X 70 IVA--WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGE-GWALTS--DDSHLYMSDGTAVIRKLDPDTLQQVGSI--KV 142 (243)
T ss_dssp EEE--ETTEEEEEESSSSEEEEEETTTTEEEEEEECSSC-CCEEEE--CSSCEEEECSSSEEEEECTTTCCEEEEE--EC
T ss_pred EEE--eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCC-ceEEee--CCCEEEEECCCCeEEEEeCCCCeEEEEE--EE
Confidence 333 34455544 4678999999999999999875433 345553 44 6666667889999998765431111 11
Q ss_pred eeec-ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeee--------------cceeeEEEEecCCEEEEE
Q 047728 304 TLLK-QECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRG--------------HKLAILCLVTAGNLVFSG 368 (474)
Q Consensus 304 ~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~l~sg 368 (474)
...+ .-..++.+.+. ++..++..-.+..|.+.|.++++....+... .-..-+++.++++.|+..
T Consensus 143 ~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 143 TAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred ccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 1111 11235566665 6666655556789999999888665443321 011236666766666655
Q ss_pred e
Q 047728 369 S 369 (474)
Q Consensus 369 s 369 (474)
+
T Consensus 222 G 222 (243)
T 3mbr_X 222 G 222 (243)
T ss_dssp E
T ss_pred C
Confidence 5
No 278
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.99 E-value=0.002 Score=58.68 Aligned_cols=195 Identities=11% Similarity=0.152 Sum_probs=116.0
Q ss_pred CCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCC----C----eEEEeeC---CCcEEEEEcccCCCceee
Q 047728 231 DQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD----G----LVFTGSA---DGTVKVWRRELQGKGTKH 299 (474)
Q Consensus 231 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~----~----~l~~~~~---dg~i~iwd~~~~~~~~~~ 299 (474)
...+++.....+-+.+||+ +++.+..+.. +.++.+..-|+ + ++++... +++|.+|++.........
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4466776777888999999 8888888753 45666665542 2 2233333 578999987422221110
Q ss_pred eeee--eeecccccEEEEEE--cCC-CC-EEEEEcCCCcEEEeecCc-------ccccceeeeecceeeEEEEecCCEEE
Q 047728 300 FFSQ--TLLKQECAVTALAI--SPD-AA-IVYCGSSDGLVNFWEREL-------NLSHGGVLRGHKLAILCLVTAGNLVF 366 (474)
Q Consensus 300 ~~~~--~~~~~~~~v~~l~~--~~~-~~-~l~~~~~dg~i~v~d~~~-------~~~~~~~~~~~~~~v~~~~~~~~~l~ 366 (474)
.... ........+..+|+ +|. +. ++++...+|.+..|++.. .+.+..+..+....-+.+.+....|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 0000 01111155667777 774 43 688888999999998842 12222233333344455556688999
Q ss_pred EEeCCCcEEEEECCCC---ceEEEEeec-CC-ccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEcc
Q 047728 367 SGSADMSICIWRRKEN---EHICLSMLT-GH-SGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 367 sgs~dg~i~iwd~~~~---~~~~~~~~~-~h-~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
.+-++.-|..++.+.. ....+..+. ++ ...+..|++.+... ...++|+++-.+.++.+|+..
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~----g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAAD----GKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGG----GCEEEEEEEGGGTEEEEEESS
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCC----CCEEEEEEcCCCCEEEEEECC
Confidence 9999977777775421 122333332 22 24688898865432 122367777678899999986
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.98 E-value=0.0046 Score=59.14 Aligned_cols=231 Identities=7% Similarity=0.060 Sum_probs=125.0
Q ss_pred EEEEEecC----CEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEE
Q 047728 151 VKAIVISN----EKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSL 226 (474)
Q Consensus 151 V~~i~~~~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 226 (474)
...|+++. ..|+.+...+.|+.++..++..... .........+
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~---------------------------------~~~~~~P~gi 187 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK---------------------------------TTNIGQCADV 187 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE---------------------------------CCCCSCEEEE
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe---------------------------------ecCCCCccEE
Confidence 45677763 5666665556777777765533211 1133457899
Q ss_pred EecCCCCEEEEEECCC----c-EEEEEcCCcce-eeeeeecCcceeEEEecC-CCeEE-EeeCCCcEEEEEcccCCCcee
Q 047728 227 SMSEDQNLLYSASWDK----T-FKVWRTSDYKC-LESVIAHDDAVNSIVAGF-DGLVF-TGSADGTVKVWRRELQGKGTK 298 (474)
Q Consensus 227 ~~~~~~~~l~s~s~dg----~-i~iwd~~~~~~-~~~~~~~~~~v~~v~~~~-~~~l~-~~~~dg~i~iwd~~~~~~~~~ 298 (474)
+++++++ |+.+...+ . +...+...+.. ...+. .......+++.+ ++.|+ +-..++.|+.+|...+.....
T Consensus 188 avd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~ 265 (433)
T 4hw6_A 188 NFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE 265 (433)
T ss_dssp EECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE
T ss_pred EECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE
Confidence 9999999 55554322 1 33333221111 01222 234457788898 66555 444567888888763321010
Q ss_pred eeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCc--cccc-ceeeeec-----------------ceeeEE
Q 047728 299 HFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWEREL--NLSH-GGVLRGH-----------------KLAILC 357 (474)
Q Consensus 299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~--~~~~-~~~~~~~-----------------~~~v~~ 357 (474)
. . ..........++|+|+++.|+++ ...+.|..++... +... ...+.+. ...-++
T Consensus 266 --~-~-~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gia 341 (433)
T 4hw6_A 266 --E-V-MMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGI 341 (433)
T ss_dssp --E-E-ECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEE
T ss_pred --E-e-ccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEE
Confidence 0 0 11112223469999999955554 4567899977652 2110 0111111 011255
Q ss_pred E---------EecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC------------------ccceEEEEEe-eCCccc
Q 047728 358 L---------VTAGNLVFSGSADMSICIWRRKENEHICLSMLTGH------------------SGPVKCLAVE-KDDESL 409 (474)
Q Consensus 358 ~---------~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h------------------~~~v~~l~~~-~~~~~~ 409 (474)
+ ..++.++++-...+.|+.++. .+.. ..+.+. -.....|++. +++.
T Consensus 342 v~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v---~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~-- 415 (433)
T 4hw6_A 342 FVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV---TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC-- 415 (433)
T ss_dssp EEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE---EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE--
T ss_pred EEccccccccCCCCcEEEEECCCCEEEEECC-CCCE---EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE--
Confidence 5 445566666666788988885 3432 222211 1236788998 5665
Q ss_pred cccceEEEEEecCCCcEEEEEcc
Q 047728 410 SREKRWILYSGSLDKSVKMWRVS 432 (474)
Q Consensus 410 ~~~~~~~l~s~s~Dg~i~vw~~~ 432 (474)
++++-...++|+.++++
T Consensus 416 ------lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 416 ------FYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ------EEEEEGGGTEEEEEEEC
T ss_pred ------EEEEeCCCCEEEEEecC
Confidence 66666667788887764
No 280
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.97 E-value=0.0094 Score=54.66 Aligned_cols=229 Identities=9% Similarity=0.045 Sum_probs=116.4
Q ss_pred CcEEEEEEcCCEEEEeeCCCcEEEEe-CCccccccc---cCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeee
Q 047728 111 GHIYSLAAAGDLLYTGSDSKNIRVWK-NQREFSGFK---SNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKR 185 (474)
Q Consensus 111 ~~i~~~~~~~~~l~tgs~dg~v~vwd-~~~~~~~~~---~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 185 (474)
..+.++.++++.++.++.+|.|..-+ -++.-.... .+.+.+..|.+. ++.++.++.+|.| |....+-......
T Consensus 80 ~~~~~i~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~~ 157 (327)
T 2xbg_A 80 YRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQAL 157 (327)
T ss_dssp CEEEEEEEETTEEEEEEETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEEEE
T ss_pred ccEEEEEecCCeEEEEECCCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEEe
Confidence 35777777755555555667554432 222211111 233456777764 5555555566643 3222211111110
Q ss_pred ecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEE-EEc--CCcceeeeeeecC
Q 047728 186 VGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKV-WRT--SDYKCLESVIAHD 262 (474)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~i-wd~--~~~~~~~~~~~~~ 262 (474)
. ......+..+++.+++.+++.+ .++.+.. +|- .+.+.+. ....
T Consensus 158 ~------------------------------~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~gG~tW~~~~--~~~~ 204 (327)
T 2xbg_A 158 V------------------------------QEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPGQTAWEPHN--RTTS 204 (327)
T ss_dssp E------------------------------CSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTTCSSCEEEE--CCSS
T ss_pred e------------------------------cCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCCCCceeECC--CCCC
Confidence 0 0133467889999988777655 4555544 332 2222221 2345
Q ss_pred cceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeee-ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcc
Q 047728 263 DAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTL-LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELN 341 (474)
Q Consensus 263 ~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~ 341 (474)
..+..+.+.+++.++.++.+|.+++.+...+. ........ ......+..+++.+++..++++. ++.|. +..+.+
T Consensus 205 ~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~---tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~DgG 279 (327)
T 2xbg_A 205 RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSE---NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDGG 279 (327)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEETTEEE---EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESSTT
T ss_pred CccceeEECCCCCEEEEeCCceEEEecCCCCC---eeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCCC
Confidence 67788888888866777778887776421111 00001100 11234588999998887777655 56663 333333
Q ss_pred cccceeee--ecceeeEEEEe-cCCEEEEEeCCCcEEEEEC
Q 047728 342 LSHGGVLR--GHKLAILCLVT-AGNLVFSGSADMSICIWRR 379 (474)
Q Consensus 342 ~~~~~~~~--~~~~~v~~~~~-~~~~l~sgs~dg~i~iwd~ 379 (474)
..-..... .....+.++.+ +...+++++.+|.|.-++-
T Consensus 280 ~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 280 QTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp SSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred cccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 22211111 11122333333 4556777778898776654
No 281
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.93 E-value=0.016 Score=59.66 Aligned_cols=200 Identities=10% Similarity=0.014 Sum_probs=117.6
Q ss_pred ccCCeeEEEecCCCCEEEEE-ECCCcEEEEEcCCc----ceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcc
Q 047728 219 HFDAISSLSMSEDQNLLYSA-SWDKTFKVWRTSDY----KCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRE 291 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~----~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~ 291 (474)
....+..|+|.+....|+.+ ...+.|+.+++... .....+.........|++.+.+ ++++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 34567789999865555554 45677888888653 2222333234556788888665 55566667889999886
Q ss_pred cCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC--CCcEEEeecCcccccceeeee--cceeeEEEEecCCEEEE
Q 047728 292 LQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS--DGLVNFWERELNLSHGGVLRG--HKLAILCLVTAGNLVFS 367 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~s 367 (474)
.... .............|+++|....|+.... .+.|...++...... .+... ....-+++.+.+..|+.
T Consensus 502 G~~~------~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~lv~~~l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 502 GVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSSE------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSSCSCEEEEEEETTTTEEEE
T ss_pred CCeE------EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-EEEeCCCCCceEEEEecCCCeEEE
Confidence 3221 1112233445889999997666666543 267888888754332 22221 22334667766666666
Q ss_pred Ee-CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 368 GS-ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 368 gs-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+. ..+.|..+++.......+..-...-....+|++..+ . ++++-...+.|...+..++
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~--------lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-K--------VFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-E--------EEEEETTTTEEEEEETTTC
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-E--------EEEEECCCCEEEEEeCCCC
Confidence 54 457899999876654323222122233456776433 3 5566666677777775555
No 282
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.90 E-value=0.003 Score=57.05 Aligned_cols=205 Identities=11% Similarity=0.106 Sum_probs=118.4
Q ss_pred EEEEec--CCEEEEEe-CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728 152 KAIVIS--NEKIFSGH-QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM 228 (474)
Q Consensus 152 ~~i~~~--~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 228 (474)
.++.|+ ...++.++ ..++|..|+...+..... .+..+.... .....+..|.|
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g------------------------~~~~~~sGl~~ 70 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNG------------------------DGEQQMSGLSL 70 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSS------------------------CCSEEEEEEEE
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccC------------------------CCcceeeEEEE
Confidence 356776 35666666 789999999875432211 111000000 01113478899
Q ss_pred ---cCCCCEEEEEE-------------CCCcEEEEEcC---Ccceeeeeee--cC-----------cceeEEEecCCC-e
Q 047728 229 ---SEDQNLLYSAS-------------WDKTFKVWRTS---DYKCLESVIA--HD-----------DAVNSIVAGFDG-L 275 (474)
Q Consensus 229 ---~~~~~~l~s~s-------------~dg~i~iwd~~---~~~~~~~~~~--~~-----------~~v~~v~~~~~~-~ 275 (474)
.|++.++++.. .+..|..+|+. +++.+..... .. .....++..++| .
T Consensus 71 ~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna 150 (334)
T 2p9w_A 71 LTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS 150 (334)
T ss_dssp SSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE
T ss_pred eccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE
Confidence 57866666543 26779999998 7777665542 11 247899999999 6
Q ss_pred EEEeeCC-CcEEEEEcccCCCceeeee-eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee--e-
Q 047728 276 VFTGSAD-GTVKVWRRELQGKGTKHFF-SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR--G- 350 (474)
Q Consensus 276 l~~~~~d-g~i~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~- 350 (474)
.++++.- +.|..++.. ++...... ...........+.|+++|+++.|++....+.+..+|+........... +
T Consensus 151 YVt~s~~~~~I~rV~pd--G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~ 228 (334)
T 2p9w_A 151 YVAFALGMPAIARVSAD--GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGD 228 (334)
T ss_dssp EEEEEESSCEEEEECTT--SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSC
T ss_pred EEeCCCCCCeEEEEeCC--CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCC
Confidence 6667766 766655544 22111111 111112233477899999999999887799999999885422001111 1
Q ss_pred -----cceeeEEEEecCCE-EEEEeCCCcEEEEECCCCc
Q 047728 351 -----HKLAILCLVTAGNL-VFSGSADMSICIWRRKENE 383 (474)
Q Consensus 351 -----~~~~v~~~~~~~~~-l~sgs~dg~i~iwd~~~~~ 383 (474)
....++....+|+. +++....+.+.+.+.+..+
T Consensus 229 ~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 229 FGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDNWK 267 (334)
T ss_dssp CCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSSTTS
T ss_pred cccccCcccccccccCCEEEEEEcCCCCEEEEECCCCcc
Confidence 11222334457777 4555566666676665543
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.90 E-value=0.014 Score=53.29 Aligned_cols=196 Identities=10% Similarity=0.029 Sum_probs=119.7
Q ss_pred CeeEEEecCCCCEEEEE-ECCCcEEEEEcCCcceee-eeeecCcceeEEEecCC-C-eEEEeeCCCcEEEEEcccCCCce
Q 047728 222 AISSLSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLE-SVIAHDDAVNSIVAGFD-G-LVFTGSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~v~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~ 297 (474)
.+..++|.+.+..|+.+ ...+.|..+++....... .+...-.....+++.+. + ++++-...+.|.++++.....
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-- 113 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-- 113 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--
Confidence 46688999865555554 456889999987654222 22222345677888864 4 555556678899998763221
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEcC--CCcEEEeecCcccccceeee--ecceeeEEEEecCCEEEEEe-CCC
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSS--DGLVNFWERELNLSHGGVLR--GHKLAILCLVTAGNLVFSGS-ADM 372 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~sgs-~dg 372 (474)
.............++++|.+..|+.... .+.|..++++..... .+.. -....-+++++++..|+.+. ..+
T Consensus 114 ----~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~~~~~l~~Pnglavd~~~~~lY~aD~~~~ 188 (318)
T 3sov_A 114 ----KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-IIINSEIYWPNGLTLDYEEQKLYWADAKLN 188 (318)
T ss_dssp ----EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred ----EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-EEEECCCCCccEEEEeccCCEEEEEECCCC
Confidence 1111233456789999997666666553 578888887643221 1111 12234577887666665554 568
Q ss_pred cEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 373 SICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 373 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
.|..+|+.......+ ..+.......+++..+ . ++++-...+.|..++..+++
T Consensus 189 ~I~~~d~dG~~~~~~--~~~~~~~P~glav~~~-~--------lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 189 FIHKSNLDGTNRQAV--VKGSLPHPFALTLFED-I--------LYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEEEEETTSCSCEEE--ECSCCSCEEEEEEETT-E--------EEEEETTTTEEEEEETTTCC
T ss_pred EEEEEcCCCCceEEE--ecCCCCCceEEEEeCC-E--------EEEEecCCCeEEEEECCCCC
Confidence 899999876543222 2223445677777533 3 56666677888888876554
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.88 E-value=0.019 Score=54.29 Aligned_cols=237 Identities=10% Similarity=0.029 Sum_probs=130.2
Q ss_pred CcEEEEeCCcc-ccccccCccCEEEEEec--CCEEEEEe-CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCe
Q 047728 130 KNIRVWKNQRE-FSGFKSNSGLVKAIVIS--NEKIFSGH-QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNY 205 (474)
Q Consensus 130 g~v~vwd~~~~-~~~~~~h~~~V~~i~~~--~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (474)
..|+..++... ...+......+.+|+|+ ++.|+.+. ..+.|+.++++.........
T Consensus 92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~-------------------- 151 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD-------------------- 151 (400)
T ss_dssp TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCE--------------------
T ss_pred ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcce--------------------
Confidence 45666664422 22333345577888887 45555554 56778888876532100000
Q ss_pred EEEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeC--
Q 047728 206 IEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA-- 281 (474)
Q Consensus 206 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~-- 281 (474)
.+..........|++.+.+..|+ +-...+.|.+.++........+.........|++.|.+ .|+....
T Consensus 152 --------~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~ 223 (400)
T 3p5b_L 152 --------TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 223 (400)
T ss_dssp --------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS
T ss_pred --------EEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC
Confidence 00011234567889988544554 44567889999987654444444344567899999854 5544432
Q ss_pred CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccccceeeee--cceeeEEE
Q 047728 282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHGGVLRG--HKLAILCL 358 (474)
Q Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~ 358 (474)
.+.|...++..... . ......-.....|++++++..|+.+. ..+.|..+|++..... .+... ....-..+
T Consensus 224 ~~~I~~~~~dG~~~--~----~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~l~~P~gl 296 (400)
T 3p5b_L 224 PAKIKKGGLNGVDI--Y----SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSL 296 (400)
T ss_dssp SCCEEEEETTSCSC--E----EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE-EEEECSSTTSSEEEE
T ss_pred CCEEEEEeCCCCcc--E----EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE-EEEeCCCCCCCCEEE
Confidence 36788777753221 1 11122335688999999777776664 4678999998754322 22221 11222344
Q ss_pred EecCC-EEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEe
Q 047728 359 VTAGN-LVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVE 403 (474)
Q Consensus 359 ~~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~ 403 (474)
..++. ++++-...+.|..+|..+++.. ..+........++.+.
T Consensus 297 ~v~~~~lywtd~~~~~V~~~~~~~G~~~--~~i~~~~~~p~~i~v~ 340 (400)
T 3p5b_L 297 AVFEDKVFWTDIINEAIFSANRLTGSDV--NLLAENLLSPEDMVLF 340 (400)
T ss_dssp EEETTEEEEEESSSCSEEEEESSSCCCC--EEEECSCSCEEEEEEE
T ss_pred EEeCCEEEEecCCCCeEEEEEcCCCCce--EEEecCCCCCceEEEE
Confidence 44444 4455556688988987666532 2333333334555443
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.87 E-value=0.015 Score=55.97 Aligned_cols=201 Identities=11% Similarity=0.063 Sum_probs=116.6
Q ss_pred CCeeEEEe-------cCCCCEEEEEECCC-------cEEEEEcCC-ccee-----eeeeecCcceeEEEecCCC--eEEE
Q 047728 221 DAISSLSM-------SEDQNLLYSASWDK-------TFKVWRTSD-YKCL-----ESVIAHDDAVNSIVAGFDG--LVFT 278 (474)
Q Consensus 221 ~~V~~l~~-------~~~~~~l~s~s~dg-------~i~iwd~~~-~~~~-----~~~~~~~~~v~~v~~~~~~--~l~~ 278 (474)
.....|+| +++++.|+++...+ .|.+++... +... ..+.. -.....++++|++ ++++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvt 264 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFN 264 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEE
Confidence 45789999 99999777776654 266666433 2322 22322 2244678889954 5556
Q ss_pred eeCCCcEEEEEcc-------cCCCcee---e----eeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccc
Q 047728 279 GSADGTVKVWRRE-------LQGKGTK---H----FFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLS 343 (474)
Q Consensus 279 ~~~dg~i~iwd~~-------~~~~~~~---~----~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~ 343 (474)
-..++.|..+|+. .+..... . ...............++|+|+++.|+.+ .....|+.++......
T Consensus 265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~ 344 (496)
T 3kya_A 265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK 344 (496)
T ss_dssp ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred ECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence 6677889999987 2221000 0 0000112233456899999999965555 5567888866543210
Q ss_pred -c--ceeeeec------------------ceeeEEEE-------ecCCEEEEEeCCCcEEEEECCCCceEEEEeecCC--
Q 047728 344 -H--GGVLRGH------------------KLAILCLV-------TAGNLVFSGSADMSICIWRRKENEHICLSMLTGH-- 393 (474)
Q Consensus 344 -~--~~~~~~~------------------~~~v~~~~-------~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h-- 393 (474)
+ ...+.+. ....+++. .++.++++=...+.|+.++. .+.. .++.+.
T Consensus 345 ~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v---~TiaG~g~ 420 (496)
T 3kya_A 345 EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIV---STYAGRGA 420 (496)
T ss_dssp EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBE---EEEEESCT
T ss_pred eecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCE---EEEecccc
Confidence 0 0111111 11134444 34566666667789999984 4442 222211
Q ss_pred ----------------------ccceEEEEEeeC-CccccccceEEEEEecCCCcEEEEEccCC
Q 047728 394 ----------------------SGPVKCLAVEKD-DESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 394 ----------------------~~~v~~l~~~~~-~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
-.....|++.++ +. ++++=....+|+.+++...
T Consensus 421 ~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~--------lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 421 STSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM--------FYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp THHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE--------EEEEETTTTEEEEEEECCC
T ss_pred cccccCccccccCCCCchhhhhcCCCcEEEEECCCCE--------EEEEeCCCCEEEEEECCCC
Confidence 123678999986 66 6666677889999998765
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.77 E-value=0.0075 Score=54.43 Aligned_cols=159 Identities=6% Similarity=0.025 Sum_probs=101.0
Q ss_pred eeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeec-------CcceeEEEe---cCCCeEEE-ee----------
Q 047728 223 ISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAH-------DDAVNSIVA---GFDGLVFT-GS---------- 280 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~v~~---~~~~~l~~-~~---------- 280 (474)
-.+++|.+....|+.++ ..++|..||...+......... ...+..|.+ .+++.|++ ..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 44789988666777666 7899999998755433332111 113578899 57784443 33
Q ss_pred ---CCCcEEEEEcc---cCCCceeeeeeeeeec-------ccccEEEEEEcCCCCEEEEEcCC-CcEEEeecCcccccce
Q 047728 281 ---ADGTVKVWRRE---LQGKGTKHFFSQTLLK-------QECAVTALAISPDAAIVYCGSSD-GLVNFWERELNLSHGG 346 (474)
Q Consensus 281 ---~dg~i~iwd~~---~~~~~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~~~~~d-g~i~v~d~~~~~~~~~ 346 (474)
.+..|..||+. +........+.....+ .......++..++|+..++++.. +.|..++....... .
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~-~ 173 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS-T 173 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE-E
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe-e
Confidence 16779999987 4433211111111111 12358899999999999988888 88888777644211 1
Q ss_pred eeeec-------ceeeEEEEecCCEEEEEeCCCcEEEEECCCC
Q 047728 347 VLRGH-------KLAILCLVTAGNLVFSGSADMSICIWRRKEN 382 (474)
Q Consensus 347 ~~~~~-------~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~ 382 (474)
..... ...-+.+.++++.|++....|.|..+|+...
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 11111 1224678889998888877999999998843
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.76 E-value=0.0023 Score=66.12 Aligned_cols=235 Identities=13% Similarity=0.035 Sum_probs=116.1
Q ss_pred EEEE-EcCCEEEEeeC-CC----cEEEEeCCcc-ccccccC-ccCEEEEEec--CCEEEEEeCC-----CeEEEEecCCC
Q 047728 114 YSLA-AAGDLLYTGSD-SK----NIRVWKNQRE-FSGFKSN-SGLVKAIVIS--NEKIFSGHQD-----GKIRVWKVSSK 178 (474)
Q Consensus 114 ~~~~-~~~~~l~tgs~-dg----~v~vwd~~~~-~~~~~~h-~~~V~~i~~~--~~~l~s~~~d-----g~i~vwd~~~~ 178 (474)
.+++ |+|++||-+.. +| .|+++|+... .. +... ......+.|+ ++.|+....| ..|.++++.++
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~ 257 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKL 257 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSC
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCC
Confidence 4567 77888775433 33 4889986533 11 1111 1112356676 5566666654 25677777655
Q ss_pred CcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC---CCcEEEEEcCCcc-e
Q 047728 179 DASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW---DKTFKVWRTSDYK-C 254 (474)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---dg~i~iwd~~~~~-~ 254 (474)
+........ .........+.|+||+++|+..+. ...|.++|+.++. .
T Consensus 258 ~~~~~lv~~-----------------------------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~ 308 (751)
T 2xe4_A 258 QSEDVCLYE-----------------------------EHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH 308 (751)
T ss_dssp GGGCEEEEE-----------------------------CCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC
T ss_pred chhcEEEEe-----------------------------cCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC
Confidence 321100000 012234567899999998887653 3468888988752 1
Q ss_pred e--eee-eecCcceeEEEecCCC-eEEEeeCC--C--cEEEEEcccCCCceeeeeeee-eecccc--cEEEEEEcCCCCE
Q 047728 255 L--ESV-IAHDDAVNSIVAGFDG-LVFTGSAD--G--TVKVWRRELQGKGTKHFFSQT-LLKQEC--AVTALAISPDAAI 323 (474)
Q Consensus 255 ~--~~~-~~~~~~v~~v~~~~~~-~l~~~~~d--g--~i~iwd~~~~~~~~~~~~~~~-~~~~~~--~v~~l~~~~~~~~ 323 (474)
. ..+ .........+.|+.++ +++....+ + .|..+|+..... ... +..+.. .+..+.+. .+.+
T Consensus 309 ~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~------~~~~li~~~~~~~l~~~~~~-~~~l 381 (751)
T 2xe4_A 309 NTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSD------WSHVLVDHSEDVFMESIAVR-SNYL 381 (751)
T ss_dssp CCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTC------CCCEEECCCSSEEEEEEEEC-SSEE
T ss_pred ceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCccc------ceeeEECCCCCcEEEEEEEE-CCEE
Confidence 2 223 3334555666655555 44444443 3 455555542111 011 122222 34555554 3345
Q ss_pred EEEEcCCCc--EEEeec-------CcccccceeeeecceeeEEE------EecCC-EEEEEeCC---CcEEEEECCCCce
Q 047728 324 VYCGSSDGL--VNFWER-------ELNLSHGGVLRGHKLAILCL------VTAGN-LVFSGSAD---MSICIWRRKENEH 384 (474)
Q Consensus 324 l~~~~~dg~--i~v~d~-------~~~~~~~~~~~~~~~~v~~~------~~~~~-~l~sgs~d---g~i~iwd~~~~~~ 384 (474)
+++...++. |.++|+ ..+.....+.......+..+ ++++. ++++.+.. ..+..+|+.+++.
T Consensus 382 v~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 382 VVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp EEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred EEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 556666775 445564 22220112211112223445 23443 44444433 4577778776654
Q ss_pred E
Q 047728 385 I 385 (474)
Q Consensus 385 ~ 385 (474)
.
T Consensus 462 ~ 462 (751)
T 2xe4_A 462 T 462 (751)
T ss_dssp E
T ss_pred E
Confidence 3
No 288
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.75 E-value=0.023 Score=51.70 Aligned_cols=217 Identities=10% Similarity=0.033 Sum_probs=119.6
Q ss_pred CcEEEEeCCcc---ccccccCccCEEEEEec--CCEEE-EEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCC
Q 047728 130 KNIRVWKNQRE---FSGFKSNSGLVKAIVIS--NEKIF-SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPS 203 (474)
Q Consensus 130 g~v~vwd~~~~---~~~~~~h~~~V~~i~~~--~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (474)
..|+..++... ............++.|+ ++.|+ +-...+.|..++++........
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~------------------- 73 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV------------------- 73 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE-------------------
T ss_pred CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE-------------------
Confidence 45666664432 11111222346677886 34444 4456678888888765321100
Q ss_pred CeEEEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee-
Q 047728 204 NYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS- 280 (474)
Q Consensus 204 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~- 280 (474)
..........+++.+.+..|+ +-...+.|.++++........+.........+++.|.+ .|+...
T Consensus 74 ------------~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~ 141 (318)
T 3sov_A 74 ------------VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW 141 (318)
T ss_dssp ------------EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEEC
T ss_pred ------------EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 011223456888887555554 44466789999986543322222334567899999864 555544
Q ss_pred -CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEE-cCCCcEEEeecCcccccceeeeecceeeEEE
Q 047728 281 -ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCG-SSDGLVNFWERELNLSHGGVLRGHKLAILCL 358 (474)
Q Consensus 281 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~ 358 (474)
..+.|...++..... . ......-.....|++++++..|+.+ ...+.|..+|++..... .+..+....-..+
T Consensus 142 ~~~~~I~r~~~dG~~~--~----~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~P~gl 214 (318)
T 3sov_A 142 GEVPKIERAGMDGSSR--F----IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSLPHPFAL 214 (318)
T ss_dssp SSSCEEEEEETTSCSC--E----EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSCCSCEEEE
T ss_pred CCCCEEEEEEcCCCCe--E----EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE-EEecCCCCCceEE
Confidence 256777777653211 1 1111223457899999976666655 45678999998753221 1222111222333
Q ss_pred EecCC-EEEEEeCCCcEEEEECCCCce
Q 047728 359 VTAGN-LVFSGSADMSICIWRRKENEH 384 (474)
Q Consensus 359 ~~~~~-~l~sgs~dg~i~iwd~~~~~~ 384 (474)
..++. ++++-...+.|..++..+++.
T Consensus 215 av~~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 215 TLFEDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEeCCEEEEEecCCCeEEEEECCCCCc
Confidence 33444 444545667888888866653
No 289
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.74 E-value=0.0052 Score=57.00 Aligned_cols=235 Identities=10% Similarity=0.018 Sum_probs=117.2
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce--eeeee---ecCcceeEEEecCC----CeEEEeeC-C-----Cc
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC--LESVI---AHDDAVNSIVAGFD----GLVFTGSA-D-----GT 284 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~v~~~~~----~~l~~~~~-d-----g~ 284 (474)
-.....++|.|++++ +.+..++.|++++ +++. +..+. ........|+++|+ +.|+++.. . +.
T Consensus 30 l~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345679999999985 4556779999998 4432 11111 12346789999998 44444433 2 56
Q ss_pred EEEEEcccCCCceeeeeeeeee---cccccEEEEEEcCCCCEEEEEcC-------------CCcEEEeecCcc-------
Q 047728 285 VKVWRRELQGKGTKHFFSQTLL---KQECAVTALAISPDAAIVYCGSS-------------DGLVNFWERELN------- 341 (474)
Q Consensus 285 i~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~-------------dg~i~v~d~~~~------- 341 (474)
|..|+...........+...+. ........++|.|+|.++++.+. .|.|.-++.+..
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 7777765321111111111121 11123468999999976665432 256666665531
Q ss_pred -----cccceeeeecce-eeEEEEe-cCCEEEEEeCCCcE------EEEECCCCc----------------eEEEEeecC
Q 047728 342 -----LSHGGVLRGHKL-AILCLVT-AGNLVFSGSADMSI------CIWRRKENE----------------HICLSMLTG 392 (474)
Q Consensus 342 -----~~~~~~~~~~~~-~v~~~~~-~~~~l~sgs~dg~i------~iwd~~~~~----------------~~~~~~~~~ 392 (474)
........++.. .-+++.+ ++.++++-.....+ .|.-+..+. ...+..+..
T Consensus 187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 266 (352)
T 2ism_A 187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQ 266 (352)
T ss_dssp TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCC
Confidence 011122233432 2366777 45554443322221 122222111 011222322
Q ss_pred CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728 393 HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 393 h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
......++| .++. ++++.-..+.|...++......... .....+.....++..+ ++.|||.+.+.
T Consensus 267 -~~ap~G~~~-~~G~--------l~v~~~~~~~v~~v~~~~~~~~~~~-~~~~~~~~~~~rp~~v----~~~pdG~lyv~ 331 (352)
T 2ism_A 267 -GFPPGNLAF-FRGD--------LYVAGLRGQALLRLVLEGERGRWRV-LRVETALSGFGRLREV----QVGPDGALYVT 331 (352)
T ss_dssp -CCCEEEEEE-ETTE--------EEEEETTTTEEEEEEEEEETTEEEE-EEEEEEEESSCCEEEE----EECTTSCEEEE
T ss_pred -CCCCcceEE-ECCE--------EEEEECCCCEEEEEEECCCCcceee-cchheecccCCCeeEE----EECCCCcEEEE
Confidence 234567777 4555 6666666677777777654321000 0011111112345666 66788887765
No 290
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.71 E-value=0.024 Score=51.00 Aligned_cols=150 Identities=11% Similarity=0.076 Sum_probs=76.7
Q ss_pred CCCEEEEEECC-----CcEEEEEcCCcceeeeeeecC-cceeEEEecCCC-eEEEeeCC-----CcEEEEEcccCCCcee
Q 047728 231 DQNLLYSASWD-----KTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDG-LVFTGSAD-----GTVKVWRRELQGKGTK 298 (474)
Q Consensus 231 ~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~-~l~~~~~d-----g~i~iwd~~~~~~~~~ 298 (474)
++.+++.|+.+ ..+.+||..+.+-...-.... ..-.+++.. ++ .++.|+.+ ..+.+||+....
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~---- 186 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGH---- 186 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCc----
Confidence 45666666643 358889987765332211111 111222222 45 66667654 457888876432
Q ss_pred eeeeeeeecccccEEEEEEcCCCCEEEEEcCC-----CcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEEeCC-
Q 047728 299 HFFSQTLLKQECAVTALAISPDAAIVYCGSSD-----GLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSGSAD- 371 (474)
Q Consensus 299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sgs~d- 371 (474)
................+.+ ++.+++.|+.+ ..+.+||+.+..-... ..........++..++++++.|+.+
T Consensus 187 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 187 WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDG 264 (301)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCC
Confidence 1111111111112222222 56677777664 4688999876532211 1111111223344577777887765
Q ss_pred ----CcEEEEECCCCceEEE
Q 047728 372 ----MSICIWRRKENEHICL 387 (474)
Q Consensus 372 ----g~i~iwd~~~~~~~~~ 387 (474)
..+.+||..+.+...+
T Consensus 265 ~~~~~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 265 NSLLSSIECYDPIIDSWEVV 284 (301)
T ss_dssp SSBEEEEEEEETTTTEEEEE
T ss_pred CcccccEEEEcCCCCeEEEc
Confidence 4678899988765443
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.71 E-value=0.028 Score=51.22 Aligned_cols=141 Identities=14% Similarity=0.231 Sum_probs=86.9
Q ss_pred CCcEEEEEcC--Ccceeeeeee------cC-cceeEEEe--cCC-C--eEEEeeCCCcEEEEEcccCCCc-eeeeeeeee
Q 047728 241 DKTFKVWRTS--DYKCLESVIA------HD-DAVNSIVA--GFD-G--LVFTGSADGTVKVWRRELQGKG-TKHFFSQTL 305 (474)
Q Consensus 241 dg~i~iwd~~--~~~~~~~~~~------~~-~~v~~v~~--~~~-~--~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~ 305 (474)
+++|.+|++. +++ +..+.. .. ..+..+++ ++. + ++++...+|.+..|++...... ........
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~- 175 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA- 175 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE-
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE-
Confidence 5789999773 333 433311 11 55677777 664 4 6888899999999998654333 22222333
Q ss_pred ecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccc----ccceee-eec---ceeeEEEE--ecCC-EEEEEe-CCCc
Q 047728 306 LKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNL----SHGGVL-RGH---KLAILCLV--TAGN-LVFSGS-ADMS 373 (474)
Q Consensus 306 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~-~~~---~~~v~~~~--~~~~-~l~sgs-~dg~ 373 (474)
......+..+..++....|+++-++.-|..|+.+... ...... .++ ...-+.+. .+++ +|++.+ .+++
T Consensus 176 f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 176 FKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred ecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence 3335678899999999999999998777777754221 111111 121 12234453 3444 666666 6789
Q ss_pred EEEEECC-CCc
Q 047728 374 ICIWRRK-ENE 383 (474)
Q Consensus 374 i~iwd~~-~~~ 383 (474)
+.+||.. +.+
T Consensus 256 ~~Vydr~~~~~ 266 (355)
T 3amr_A 256 YAIYDRQGKNK 266 (355)
T ss_dssp EEEEESSTTCC
T ss_pred EEEEECCCCCc
Confidence 9999997 444
No 292
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.69 E-value=0.00054 Score=69.94 Aligned_cols=198 Identities=11% Similarity=0.019 Sum_probs=112.2
Q ss_pred CCeeEEEecCCCCEEEEEE-CCCcEEEEEcCC----cceeeeeeecCcceeEEEecCC-C-eEEEeeCCCcEEEEEcccC
Q 047728 221 DAISSLSMSEDQNLLYSAS-WDKTFKVWRTSD----YKCLESVIAHDDAVNSIVAGFD-G-LVFTGSADGTVKVWRRELQ 293 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~----~~~~~~~~~~~~~v~~v~~~~~-~-~l~~~~~dg~i~iwd~~~~ 293 (474)
..+..|+|.+.+..|+.+. ..+.|+.+++.. ......+.........|++.+. + ++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3566889998776776654 457899999875 2222222222234566787744 3 4555556788999887632
Q ss_pred CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC--CCcEEEeecCcccccceeee--ecceeeEEEEecCCE-EEEE
Q 047728 294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS--DGLVNFWERELNLSHGGVLR--GHKLAILCLVTAGNL-VFSG 368 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~-l~sg 368 (474)
.. .............|+++|.+..|+.+.. .+.|.++++...... .+.. .....-+++++++.. +++-
T Consensus 486 ~~------~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~l~~~~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 486 KR------KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp CE------EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-EESCSSCSSCCCEEECTTTCCEEEEE
T ss_pred ce------EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-EEEeCCCCCccEEEEeccCCEEEEEe
Confidence 21 1111122234677899997665555543 267888887643221 1111 122334778876554 4455
Q ss_pred eCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 369 SADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 369 s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
...+.|..+++.......+............|++..+ . ++++....+.|..++..++
T Consensus 559 ~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~--------lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 559 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-K--------VFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-E--------EEEECSTTTCEEEEETTTE
T ss_pred cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-E--------EEEEeCCCCeEEEEEccCC
Confidence 5667899999976543222221122233445666544 3 6677777788999886543
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.66 E-value=0.0052 Score=58.78 Aligned_cols=196 Identities=9% Similarity=0.071 Sum_probs=114.2
Q ss_pred CCeeEEEecCC--CCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCC-----cEEEEEcccC
Q 047728 221 DAISSLSMSED--QNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADG-----TVKVWRRELQ 293 (474)
Q Consensus 221 ~~V~~l~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg-----~i~iwd~~~~ 293 (474)
.....|+|.|+ ...|+.+...+.|+.+|..+++..... ........+++.+++.|+.+...+ .+...+....
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 35678999984 556666655588999999877654433 344568899999998554444322 1333332211
Q ss_pred CCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecCcccccceeeeec---ceeeEEEEecCCEEEEE-
Q 047728 294 GKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERELNLSHGGVLRGH---KLAILCLVTAGNLVFSG- 368 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~l~sg- 368 (474)
.. .. .. .........++++| ++.++++-..++.|+.+|..++.......... ...-+++++++++|+.+
T Consensus 218 ~~-~~----~~-~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 218 FT-ER----LS-LCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp TC-CE----EE-EEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred ee-cc----cc-ccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 11 00 01 11234456788999 67666666677889999987554311221111 11237888899855555
Q ss_pred eCCCcEEEEECCC--CceEEEEeecCC---------------ccceEEEEE---------eeCCccccccceEEEEEecC
Q 047728 369 SADMSICIWRRKE--NEHICLSMLTGH---------------SGPVKCLAV---------EKDDESLSREKRWILYSGSL 422 (474)
Q Consensus 369 s~dg~i~iwd~~~--~~~~~~~~~~~h---------------~~~v~~l~~---------~~~~~~~~~~~~~~l~s~s~ 422 (474)
...+.|+.++... +.......+.+. -.....+++ .+++. ++++-..
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~--------lyvaD~~ 363 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD--------FYFCDRD 363 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE--------EEEEETT
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc--------EEEEECC
Confidence 4568899988652 221101111111 123567888 55555 6666667
Q ss_pred CCcEEEEEc
Q 047728 423 DKSVKMWRV 431 (474)
Q Consensus 423 Dg~i~vw~~ 431 (474)
.++|+.++.
T Consensus 364 n~~I~~~~~ 372 (433)
T 4hw6_A 364 SHTVRVLTP 372 (433)
T ss_dssp TTEEEEECT
T ss_pred CCEEEEECC
Confidence 778888874
No 294
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.66 E-value=0.033 Score=50.70 Aligned_cols=216 Identities=11% Similarity=0.028 Sum_probs=118.4
Q ss_pred CcEEEEeCCcc-ccccccCccCEEEEEec--CCEEEEE-eCCCeEEEEecCCCC---cceeeeecccCccceeeeeecCC
Q 047728 130 KNIRVWKNQRE-FSGFKSNSGLVKAIVIS--NEKIFSG-HQDGKIRVWKVSSKD---ASIHKRVGTLPTFKDFIKCSMKP 202 (474)
Q Consensus 130 g~v~vwd~~~~-~~~~~~h~~~V~~i~~~--~~~l~s~-~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 202 (474)
..|+..|.... ...+........+++|+ ++.|+.+ ..++.|..++++... ....
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~------------------- 70 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT------------------- 70 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE-------------------
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE-------------------
Confidence 34777764432 22222234457788887 4555554 456788888877521 1000
Q ss_pred CCeEEEeeeccceeeeccCCeeEEEecCCCCEEE-EEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee
Q 047728 203 SNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLY-SASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS 280 (474)
Q Consensus 203 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~ 280 (474)
.+.........+++.+.+..|+ +-...+.|.++|+........+.........+++.|.+ .++.+.
T Consensus 71 ------------~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d 138 (316)
T 1ijq_A 71 ------------VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 138 (316)
T ss_dssp ------------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEE
T ss_pred ------------EEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEc
Confidence 0001223457888887555555 44567889999987543333333334567899999854 554444
Q ss_pred CC--CcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccccceeeee--cceee
Q 047728 281 AD--GTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHGGVLRG--HKLAI 355 (474)
Q Consensus 281 ~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~--~~~~v 355 (474)
.. +.|..+++.... .. ......-.....+++++++..|+.+. ..+.|..+|++..... .+... .....
T Consensus 139 ~~~~~~I~~~~~dG~~--~~----~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~-~~~~~~~~~~~P 211 (316)
T 1ijq_A 139 WGTPAKIKKGGLNGVD--IY----SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHP 211 (316)
T ss_dssp CSSSCEEEEEETTSCC--EE----EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTTTSSE
T ss_pred cCCCCeEEEEcCCCCC--eE----EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE-EEeecCCccCCc
Confidence 32 677777765221 11 11112335678999999777666554 5578999998753221 22221 11112
Q ss_pred EEEEec-CCEEEEEeCCCcEEEEECCCCc
Q 047728 356 LCLVTA-GNLVFSGSADMSICIWRRKENE 383 (474)
Q Consensus 356 ~~~~~~-~~~l~sgs~dg~i~iwd~~~~~ 383 (474)
..+..+ +.++++-...+.|..++..+++
T Consensus 212 ~giav~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 212 FSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence 223333 4444455566788888876655
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.65 E-value=0.063 Score=53.87 Aligned_cols=197 Identities=13% Similarity=0.023 Sum_probs=120.3
Q ss_pred CCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCce
Q 047728 221 DAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~ 297 (474)
..+..|+|.+.+..|+.+. .++.|..+++........+.........+++.+.+ ++++-...+.|.+.++.....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-- 114 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-- 114 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC--
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE--
Confidence 4577999999766666554 57889999886544333333223456788887654 555555678889988863321
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEcC--CCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEe-CCCcE
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSS--DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS-ADMSI 374 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs-~dg~i 374 (474)
. ......-.....|+++|....|+.... .+.|...+++...............-+++.++++.|+.+. ..+.|
T Consensus 115 ~----~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I 190 (628)
T 4a0p_A 115 Q----VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLI 190 (628)
T ss_dssp E----EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred E----EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEE
Confidence 1 111133345789999996666665542 4678777776543221111112233467777666666655 56789
Q ss_pred EEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 375 CIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 375 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
..+|+....... +........++++.. +. ++++-...+.|...|..++.
T Consensus 191 ~~~d~dG~~~~v---~~~~l~~P~glav~~-~~--------ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 191 ESSNMLGLNREV---IADDLPHPFGLTQYQ-DY--------IYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEETTSCSCEE---EEECCSCEEEEEEET-TE--------EEEEETTTTEEEEEETTTCC
T ss_pred EEEcCCCCceEE---eeccCCCceEEEEEC-CE--------EEEecCCCCEEEEEECCCCC
Confidence 999997655322 222233456788765 33 56666667888888866654
No 296
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.64 E-value=0.066 Score=55.11 Aligned_cols=219 Identities=12% Similarity=0.032 Sum_probs=123.0
Q ss_pred CcEEEEeCCc-cccccccCccCEEEEEec--CCEEE-EEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCe
Q 047728 130 KNIRVWKNQR-EFSGFKSNSGLVKAIVIS--NEKIF-SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNY 205 (474)
Q Consensus 130 g~v~vwd~~~-~~~~~~~h~~~V~~i~~~--~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (474)
..|+..++.. ....+......+.+|+++ .+.|+ +-...+.|+.++++.........
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~-------------------- 463 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD-------------------- 463 (791)
T ss_dssp SSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE--------------------
T ss_pred cceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCccee--------------------
Confidence 4566666442 233333445567788886 44554 44456778888876532100000
Q ss_pred EEEeeeccceeeeccCCeeEEEecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeC--
Q 047728 206 IEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA-- 281 (474)
Q Consensus 206 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~-- 281 (474)
.++.........|++.+.+..|+.+ ...+.|.+.++........+.........|++.|.+ .|+....
T Consensus 464 --------~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~ 535 (791)
T 3m0c_C 464 --------TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 535 (791)
T ss_dssp --------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred --------EEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC
Confidence 0011123456688998877555554 467889999987544433333344567899999874 5555443
Q ss_pred CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccccceeeee--cceeeEEE
Q 047728 282 DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHGGVLRG--HKLAILCL 358 (474)
Q Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~ 358 (474)
.+.|...++.... . .......-.....|++++.+..|+.+. ....|..+++...... .+... .-.....+
T Consensus 536 ~~~I~~~~~dG~~--~----~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-~v~~~~~~l~~P~gl 608 (791)
T 3m0c_C 536 PAKIKKGGLNGVD--I----YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSL 608 (791)
T ss_dssp SCEEEEEETTSCC--E----EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTTTSSEEEE
T ss_pred CCeEEEEecCCCc--e----EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE-EEecCCCccCCCCEE
Confidence 2667777765322 1 111122335688999998777666664 4567999988654332 22222 11223455
Q ss_pred EecCCEEEEEe-CCCcEEEEECCCCc
Q 047728 359 VTAGNLVFSGS-ADMSICIWRRKENE 383 (474)
Q Consensus 359 ~~~~~~l~sgs-~dg~i~iwd~~~~~ 383 (474)
...+..|+... ..+.|...|..+++
T Consensus 609 av~~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 609 AVFEDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEeCCEEEEEECCCCEEEEEeCCCCc
Confidence 55555555554 55788888876664
No 297
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.62 E-value=0.033 Score=53.10 Aligned_cols=141 Identities=7% Similarity=0.006 Sum_probs=81.5
Q ss_pred CCEEEEeeCCCcEEEEeCCc-cccccccCccCEEEEEec--CCEEEEEeCC-C----eEEEEecCCCCcceeeeecccCc
Q 047728 120 GDLLYTGSDSKNIRVWKNQR-EFSGFKSNSGLVKAIVIS--NEKIFSGHQD-G----KIRVWKVSSKDASIHKRVGTLPT 191 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd~~~-~~~~~~~h~~~V~~i~~~--~~~l~s~~~d-g----~i~vwd~~~~~~~~~~~~~~~~~ 191 (474)
+..|+.+...+.|+.+|... .+..+.........|+++ +++|+.+... + .+.+.+. .+.......
T Consensus 149 ~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~------ 221 (430)
T 3tc9_A 149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITE------ 221 (430)
T ss_dssp EEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEE------
T ss_pred CCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeee------
Confidence 34555555447788888653 344444445567888887 5556666542 1 1222222 221110000
Q ss_pred cceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeee-cCcceeEEE
Q 047728 192 FKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIA-HDDAVNSIV 269 (474)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~v~ 269 (474)
+ ........++++| ++.++++-..++.|..++..++........ .......++
T Consensus 222 ------------------------l-~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia 276 (430)
T 3tc9_A 222 ------------------------L-TKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQ 276 (430)
T ss_dssp ------------------------E-EECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEE
T ss_pred ------------------------e-ccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEE
Confidence 0 0123456788999 666565655778999999887654222222 123467899
Q ss_pred ecCCC-eEE-EeeCCCcEEEEEccc
Q 047728 270 AGFDG-LVF-TGSADGTVKVWRREL 292 (474)
Q Consensus 270 ~~~~~-~l~-~~~~dg~i~iwd~~~ 292 (474)
++|++ .|+ +-...+.|..++...
T Consensus 277 ~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 277 FHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EcCCCCEEEEEECCCCEEEEEeCCc
Confidence 99999 344 445677899988763
No 298
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.59 E-value=0.039 Score=49.80 Aligned_cols=154 Identities=10% Similarity=0.135 Sum_probs=78.9
Q ss_pred CCCEEEEEECC------CcEEEEEcCCcceeeeeeecC-cceeEEEecCCC-eEEEeeC---------CCcEEEEEcccC
Q 047728 231 DQNLLYSASWD------KTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDG-LVFTGSA---------DGTVKVWRRELQ 293 (474)
Q Consensus 231 ~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~-~l~~~~~---------dg~i~iwd~~~~ 293 (474)
++++++.|+.+ ..+.+||..+.+-...-.... ..-.+++.. ++ +++.|+. -..+.+||+...
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 55666777655 468899988765332211111 111122222 44 5566654 344778887643
Q ss_pred CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-----CcEEEeecCcccccc-eeeeecceeeEEEEecCCEEEE
Q 047728 294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-----GLVNFWERELNLSHG-GVLRGHKLAILCLVTAGNLVFS 367 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~l~s 367 (474)
. ................+.+ ++++++.|+.+ ..+.+||+.+..-.. ...........+...++.+++.
T Consensus 180 ~----W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~ 253 (306)
T 3ii7_A 180 T----WTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVL 253 (306)
T ss_dssp E----EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEE
T ss_pred e----EEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEE
Confidence 2 1111111111112222222 56677777654 358889987653211 1111111222334447778888
Q ss_pred EeCC-----CcEEEEECCCCceEEEEeec
Q 047728 368 GSAD-----MSICIWRRKENEHICLSMLT 391 (474)
Q Consensus 368 gs~d-----g~i~iwd~~~~~~~~~~~~~ 391 (474)
|+.+ ..+.+||..+.+...+..+.
T Consensus 254 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 282 (306)
T 3ii7_A 254 AGFQGVGRLGHILEYNTETDKWVANSKVR 282 (306)
T ss_dssp ECBCSSSBCCEEEEEETTTTEEEEEEEEE
T ss_pred eCcCCCeeeeeEEEEcCCCCeEEeCCCcc
Confidence 8754 56899999888766554444
No 299
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.58 E-value=0.005 Score=56.77 Aligned_cols=180 Identities=12% Similarity=0.136 Sum_probs=103.8
Q ss_pred CeeEEEecCCCCEEEEE------------ECCCcEEEEEcCCcc-eeeee--ee-----cCcceeEEEecC--CC--eEE
Q 047728 222 AISSLSMSEDQNLLYSA------------SWDKTFKVWRTSDYK-CLESV--IA-----HDDAVNSIVAGF--DG--LVF 277 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~------------s~dg~i~iwd~~~~~-~~~~~--~~-----~~~~v~~v~~~~--~~--~l~ 277 (474)
...++++.|+|..++++ ..+|.|.++|..+.. ....+ .+ .......+.+.+ ++ .|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45577778876444443 168999999987321 11222 22 123556666655 34 454
Q ss_pred Eee-C--CCcEEEEEcccCCCceeeeeeeeee-cccccEEEEEEcCCCCEEEEEc-----------------CCCcEEEe
Q 047728 278 TGS-A--DGTVKVWRRELQGKGTKHFFSQTLL-KQECAVTALAISPDAAIVYCGS-----------------SDGLVNFW 336 (474)
Q Consensus 278 ~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~-----------------~dg~i~v~ 336 (474)
++. . +..|.+|++....... ....... ..-...+.+.+.++|.+.++.. ..|.|..+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~--~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSL--LHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEE--EEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCEE--EEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 443 2 4678899887554322 2222222 2235688999999998777654 12456666
Q ss_pred ecCcccccceeeee-cceeeEEEEecCCEEEEEe-CCCcEEEEECCC-CceEEEEeecCCccceEEEEEee-CCc
Q 047728 337 ERELNLSHGGVLRG-HKLAILCLVTAGNLVFSGS-ADMSICIWRRKE-NEHICLSMLTGHSGPVKCLAVEK-DDE 407 (474)
Q Consensus 337 d~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~~~-~~~ 407 (474)
|.. . ......+ ....-++++++++.|+.+. ..+.|..|++.. +.......+ ...+..-.+++.+ ++.
T Consensus 209 d~~--~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 209 SPN--D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGD 279 (355)
T ss_dssp CTT--C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCC
T ss_pred ECC--e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCc
Confidence 653 1 2122222 3345588999998877765 568999999863 332222233 2245667788888 477
No 300
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.57 E-value=0.13 Score=55.41 Aligned_cols=301 Identities=11% Similarity=0.062 Sum_probs=147.2
Q ss_pred cEEEEEEcCCEEEEeeCCCcEEEEeCCc-cccc--cccCccCEEEEEec--------CCEEEEEeC-CCeEEEEecCCCC
Q 047728 112 HIYSLAAAGDLLYTGSDSKNIRVWKNQR-EFSG--FKSNSGLVKAIVIS--------NEKIFSGHQ-DGKIRVWKVSSKD 179 (474)
Q Consensus 112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~~-~~~~--~~~h~~~V~~i~~~--------~~~l~s~~~-dg~i~vwd~~~~~ 179 (474)
.|.+.+.++.+++.++ .+.+.+++... .+.. -..-...|.|+++. .+.++.|.. |++|+|++++..+
T Consensus 515 ~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~ 593 (1158)
T 3ei3_A 515 NISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE 593 (1158)
T ss_dssp CCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC
Confidence 3555555566676665 56677765321 1111 11235679999985 358899996 9999999998654
Q ss_pred cceeeeecc--cCcc--------ceeeeeecCCCCeEEEeeec-c-------ceeeeccCCeeEEEecCCCCEEEEEECC
Q 047728 180 ASIHKRVGT--LPTF--------KDFIKCSMKPSNYIEVRRHR-N-------GLWIKHFDAISSLSMSEDQNLLYSASWD 241 (474)
Q Consensus 180 ~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~-~-------~~~~~h~~~V~~l~~~~~~~~l~s~s~d 241 (474)
......... .+.. ..++...+....++...-.. . ..+.| ..++.=..+...+..-+-+..+
T Consensus 594 ~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~ 672 (1158)
T 3ei3_A 594 LLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSD 672 (1158)
T ss_dssp EEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESS
T ss_pred eEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECC
Confidence 443222211 1100 01111222222222111100 0 01112 2233333333333332223334
Q ss_pred CcEEEEEcCCcceeeeeeecCcceeEE-EecCCC---eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEE
Q 047728 242 KTFKVWRTSDYKCLESVIAHDDAVNSI-VAGFDG---LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAI 317 (474)
Q Consensus 242 g~i~iwd~~~~~~~~~~~~~~~~v~~v-~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 317 (474)
....++--+ ++.... ...-..+..+ .|+... -++ +..++.++|..+....+ .......-...+..+++
T Consensus 673 rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~~~~g~v-~~~~~~LrI~~i~~~~~-----~~~~~ipL~~Tprri~y 744 (1158)
T 3ei3_A 673 RPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDGYPDSLA-LANNSTLTIGTIDEIQK-----LHIRTVPLYESPRKICY 744 (1158)
T ss_dssp SCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSSSTTEEE-EECSSCEEEEEECCSSS-----EEEEEEECSSEEEEEEE
T ss_pred CCEEEEEcC-CceEEe-ccChHHhceEeccCcccCCCcEE-EEcCCceEEEEecccCC-----eeEEEEeCCCCceEEEE
Confidence 444444432 222211 1112233333 343221 233 23355699988754322 22233334457888888
Q ss_pred cCCCCEEEEEcCC-------------------------------------------------CcEEEeecCcccccceee
Q 047728 318 SPDAAIVYCGSSD-------------------------------------------------GLVNFWERELNLSHGGVL 348 (474)
Q Consensus 318 ~~~~~~l~~~~~d-------------------------------------------------g~i~v~d~~~~~~~~~~~ 348 (474)
+|+.+.++++..+ +.|++.|..+......+.
T Consensus 745 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~ 824 (1158)
T 3ei3_A 745 QEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQ 824 (1158)
T ss_dssp EGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEE
T ss_pred cCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEe
Confidence 8877766554321 124444444333222222
Q ss_pred eecceeeEEEE---ec---CCEEEEEe----------CCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCcccccc
Q 047728 349 RGHKLAILCLV---TA---GNLVFSGS----------ADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSRE 412 (474)
Q Consensus 349 ~~~~~~v~~~~---~~---~~~l~sgs----------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 412 (474)
......+.|+. .. ..++++|+ ..|.|++|++...+...+.. ....++|++++-.. +.
T Consensus 825 l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~-~~v~g~v~al~~~~-g~----- 897 (1158)
T 3ei3_A 825 FLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE-KEVKGAVYSMVEFN-GK----- 897 (1158)
T ss_dssp CCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE-EEESSCEEEEEEET-TE-----
T ss_pred CCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE-EEcCCcCEEEeeeC-CE-----
Confidence 22223333333 22 46888887 34889999997555433332 33567899987553 34
Q ss_pred ceEEEEEecCCCcEEEEEccCC
Q 047728 413 KRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 413 ~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
+|++.+ ..|++|++...
T Consensus 898 ---Lla~ig--~~l~vy~l~~~ 914 (1158)
T 3ei3_A 898 ---LLASIN--STVRLYEWTTE 914 (1158)
T ss_dssp ---EEEEET--TEEEEEEECTT
T ss_pred ---EEEEcC--CEEEEEECCCC
Confidence 555443 68999999765
No 301
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.51 E-value=0.048 Score=48.86 Aligned_cols=197 Identities=10% Similarity=0.123 Sum_probs=124.4
Q ss_pred EEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeee
Q 047728 226 LSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTL 305 (474)
Q Consensus 226 l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 305 (474)
.-.+|..+.|+.-. ..++.++|+++.+.+....- ...|.-=.|-.+..|+..+ +..|..|++.......+. +....
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kv-FdR~~ 147 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKM-FDRHS 147 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEE-EECCG
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCcee-eecch
Confidence 34488777776655 68899999999988888765 3456566676666444333 567999998753332222 22222
Q ss_pred ecccccEEEEEEcCCCCEEEEEcC-------CCcEEEeecCcccccceeeeecceeeEEEEecCC-----EEEEEeC---
Q 047728 306 LKQECAVTALAISPDAAIVYCGSS-------DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGN-----LVFSGSA--- 370 (474)
Q Consensus 306 ~~~~~~v~~l~~~~~~~~l~~~~~-------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~sgs~--- 370 (474)
.-....|..-..+++.++++..+- .|.+.+|..+.+ ..+.+.+|...-..+..+|+ +++-+..
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT--EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc--ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 223567888888999997766442 367888988765 44677788776666655443 3333322
Q ss_pred CCcEEEEECCCC---ceE----EEEe-ec--CCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 371 DMSICIWRRKEN---EHI----CLSM-LT--GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 371 dg~i~iwd~~~~---~~~----~~~~-~~--~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
.+.++|-++... ... .+.. +. .-.+--.++..++... +++.-+.-|.|.+||+.++..
T Consensus 226 g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg--------viyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD--------VVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp EEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT--------EEEEEETTSEEEEEETTTCCE
T ss_pred CcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC--------EEEEEeCCcEEEEEEcccCcE
Confidence 258889888432 100 0111 11 1233345666777666 788888899999999999843
No 302
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.50 E-value=0.017 Score=51.99 Aligned_cols=186 Identities=8% Similarity=0.097 Sum_probs=94.9
Q ss_pred CCCEEEEEECC-----CcEEEEEcCCcc---eee--eeeecCcceeEEEecCCC-eEEEeeCCC-----cEEEEEcccCC
Q 047728 231 DQNLLYSASWD-----KTFKVWRTSDYK---CLE--SVIAHDDAVNSIVAGFDG-LVFTGSADG-----TVKVWRRELQG 294 (474)
Q Consensus 231 ~~~~l~s~s~d-----g~i~iwd~~~~~---~~~--~~~~~~~~v~~v~~~~~~-~l~~~~~dg-----~i~iwd~~~~~ 294 (474)
++.+++.|+.+ ..+.+||..+.+ -.. .+...... .+++.. ++ .++.|+.++ .+.+||+....
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL-AGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS-CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc-eeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 45666667654 468999988765 222 12111111 122222 45 666666543 57788875432
Q ss_pred CceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-----CcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEE
Q 047728 295 KGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-----GLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSG 368 (474)
Q Consensus 295 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sg 368 (474)
.. ..............+.+ ++++++.|+.+ ..+.+||+.+..-... ..........+...++.+++.|
T Consensus 140 --W~--~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 213 (301)
T 2vpj_A 140 --WS--MLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVG 213 (301)
T ss_dssp --EE--EEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred --EE--ECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEe
Confidence 11 11111111112222222 56777777654 4588899876532211 0111111223344567777777
Q ss_pred eCC-----CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC-----CcEEEEEccCC
Q 047728 369 SAD-----MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD-----KSVKMWRVSEQ 434 (474)
Q Consensus 369 s~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D-----g~i~vw~~~~~ 434 (474)
+.+ ..+.+||..+.+...+..+.........+. -++. +++.|+.+ ..|.+||+.+.
T Consensus 214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~--------i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGR--------LYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTE--------EEEECCBCSSSBEEEEEEEETTTT
T ss_pred CCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCE--------EEEEcCcCCCcccccEEEEcCCCC
Confidence 764 568999999887654433322222222222 2555 67777655 35677787654
No 303
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.50 E-value=0.027 Score=50.79 Aligned_cols=188 Identities=12% Similarity=0.087 Sum_probs=93.4
Q ss_pred CCCEEEEEECC-----CcEEEEEcCCcceeeeeeecC-cceeEEEecCCCeEEEeeCCC-----cEEEEEcccCCCceee
Q 047728 231 DQNLLYSASWD-----KTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDGLVFTGSADG-----TVKVWRRELQGKGTKH 299 (474)
Q Consensus 231 ~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~ 299 (474)
++.+++.|+.+ ..+.+||..+.+-...-.... ..-.+++...+..++.|+.++ .+.+||+.... .
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~----W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE----W 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTE----E
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCe----E
Confidence 55666666644 358889987765322211111 111222222233666676553 36677765322 1
Q ss_pred eeeeeeecccccEEEEEEcCCCCEEEEEcCC-------CcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEEeCC
Q 047728 300 FFSQTLLKQECAVTALAISPDAAIVYCGSSD-------GLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSGSAD 371 (474)
Q Consensus 300 ~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-------g~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sgs~d 371 (474)
...............+.+ ++++++.|+.+ ..+.+||+.+..-... ..........+...++.+++.|+.+
T Consensus 137 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 214 (302)
T 2xn4_A 137 FHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHD 214 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBS
T ss_pred eecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCC
Confidence 111111111112222222 56666666543 3588899876532111 1111111223344577777887764
Q ss_pred -----CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC-----cEEEEEccCC
Q 047728 372 -----MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK-----SVKMWRVSEQ 434 (474)
Q Consensus 372 -----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg-----~i~vw~~~~~ 434 (474)
..+.+||..+.+...+..+.........+ .-++. +++.|+.++ .|.+||+.+.
T Consensus 215 ~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~--------i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 215 GPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC--AVNGL--------LYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTE--------EEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCcccceEEEEeCCCCCEeeCCCCCCccccCeEE--EECCE--------EEEECCcCCCcccccEEEEcCCCC
Confidence 46899999988765443332211111222 22555 677777553 4888888765
No 304
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.40 E-value=0.048 Score=49.30 Aligned_cols=151 Identities=11% Similarity=0.087 Sum_probs=76.4
Q ss_pred CCCEEEEEECC-----CcEEEEEcCCcceeee--eeecCcceeEEEecCCC-eEEEeeCC-----CcEEEEEcccCCCce
Q 047728 231 DQNLLYSASWD-----KTFKVWRTSDYKCLES--VIAHDDAVNSIVAGFDG-LVFTGSAD-----GTVKVWRRELQGKGT 297 (474)
Q Consensus 231 ~~~~l~s~s~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~-~l~~~~~d-----g~i~iwd~~~~~~~~ 297 (474)
++++++.|+.+ ..+.+||..+.+-... +...... .+++.. ++ +++.|+.+ ..+.+||+....
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~--- 195 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNE--- 195 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTE---
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-eEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCe---
Confidence 45566666533 4688899877643222 1111111 122222 44 66667654 457888876432
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-----CcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEEeCC
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-----GLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSGSAD 371 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sgs~d 371 (474)
................+.+ ++.+++.|+.+ ..+.+||+.+..-... ..........+...++++++.|+.+
T Consensus 196 -W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 272 (308)
T 1zgk_A 196 -WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYD 272 (308)
T ss_dssp -EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred -EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcC
Confidence 1111111111122222333 56777777654 4688999876532111 1111111223333467777777754
Q ss_pred -----CcEEEEECCCCceEEEEe
Q 047728 372 -----MSICIWRRKENEHICLSM 389 (474)
Q Consensus 372 -----g~i~iwd~~~~~~~~~~~ 389 (474)
..+.+||..+.+...+..
T Consensus 273 ~~~~~~~v~~yd~~~~~W~~~~~ 295 (308)
T 1zgk_A 273 GHTFLDSVECYDPDTDTWSEVTR 295 (308)
T ss_dssp SSCBCCEEEEEETTTTEEEEEEE
T ss_pred CCcccceEEEEcCCCCEEeecCC
Confidence 457889998877654433
No 305
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.38 E-value=0.058 Score=48.61 Aligned_cols=187 Identities=12% Similarity=0.153 Sum_probs=95.1
Q ss_pred CCCEEEEEECC----CcEEEEEcCCcceeeeeeecC-cceeEEEecCCC-eEEEeeCC------CcEEEEEcccCCCcee
Q 047728 231 DQNLLYSASWD----KTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDG-LVFTGSAD------GTVKVWRRELQGKGTK 298 (474)
Q Consensus 231 ~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~-~l~~~~~d------g~i~iwd~~~~~~~~~ 298 (474)
++.+++.|+.+ ..+.+||..+.+-...-.... ..-.+++.. ++ +++.|+.+ ..+.+||+....
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~---- 129 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTES---- 129 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTE----
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCc----
Confidence 55666777654 668889988765332211111 111122222 44 66677655 458888876432
Q ss_pred eeeeeeeecccccEEEEEEcCCCCEEEEEcC---------CCcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEE
Q 047728 299 HFFSQTLLKQECAVTALAISPDAAIVYCGSS---------DGLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSG 368 (474)
Q Consensus 299 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---------dg~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sg 368 (474)
................+.+ ++++++.|+. -..+.+||+.+..-... ..........++..++++++.|
T Consensus 130 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 207 (306)
T 3ii7_A 130 WHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVG 207 (306)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred eEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEe
Confidence 1111111111111222222 5666666653 34588899876532111 0111111223333467777777
Q ss_pred eCC-----CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC-----CcEEEEEccCC
Q 047728 369 SAD-----MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD-----KSVKMWRVSEQ 434 (474)
Q Consensus 369 s~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D-----g~i~vw~~~~~ 434 (474)
+.+ ..+.+||..+.+...+..+........++.+ ++. +++.|+.+ ..|.+||+.+.
T Consensus 208 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~--------i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 208 GQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSI--------VYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTE--------EEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCE--------EEEEeCcCCCeeeeeEEEEcCCCC
Confidence 653 4689999998876544333322222223333 555 67777754 45788888764
No 306
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.36 E-value=0.061 Score=48.35 Aligned_cols=148 Identities=11% Similarity=0.130 Sum_probs=74.7
Q ss_pred CCCEEEEEECCC-----cEEEEEcCCcceeeeeeec-CcceeEEEecCCC-eEEEeeCC-------CcEEEEEcccCCCc
Q 047728 231 DQNLLYSASWDK-----TFKVWRTSDYKCLESVIAH-DDAVNSIVAGFDG-LVFTGSAD-------GTVKVWRRELQGKG 296 (474)
Q Consensus 231 ~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~-~l~~~~~d-------g~i~iwd~~~~~~~ 296 (474)
++.+++.|+.++ .+.+||+.+.+-...-... ...-.+++.. ++ .++.|+.+ ..+.+||+....
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-- 184 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNE-- 184 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTE--
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCc--
Confidence 556677776553 4778888775533221111 1111222333 44 56666543 347788876432
Q ss_pred eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-----CcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEEeC
Q 047728 297 TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-----GLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSGSA 370 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sgs~ 370 (474)
................+.+ ++.+++.|+.+ ..+.+||+.+..-... ..........++..++.+++.|+.
T Consensus 185 --W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~ 260 (302)
T 2xn4_A 185 --WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGD 260 (302)
T ss_dssp --EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred --EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCc
Confidence 1111111111112222222 56777777654 3688899876532111 011111122334457778888876
Q ss_pred CC-----cEEEEECCCCceE
Q 047728 371 DM-----SICIWRRKENEHI 385 (474)
Q Consensus 371 dg-----~i~iwd~~~~~~~ 385 (474)
++ .+.+||..+.+..
T Consensus 261 ~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 261 DGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp CSSSBCCCEEEEETTTTEEE
T ss_pred CCCcccccEEEEcCCCCeEE
Confidence 53 4899999887754
No 307
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.35 E-value=0.25 Score=53.27 Aligned_cols=223 Identities=8% Similarity=0.073 Sum_probs=117.6
Q ss_pred cCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728 149 GLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM 228 (474)
Q Consensus 149 ~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 228 (474)
..|...+.++.+++.+. ++.+.+++++.++...... ..-...|.|+++
T Consensus 514 ~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~-------------------------------~~l~~evscl~i 561 (1158)
T 3ei3_A 514 KNISVASCNSSQVVVAV-GRALYYLQIHPQELRQISH-------------------------------TEMEHEVACLDI 561 (1158)
T ss_dssp CCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEE-------------------------------EECSSCEEEEEC
T ss_pred CEEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeecc-------------------------------cCCCCceEEEEe
Confidence 45777777777777775 6778888777542211000 113457999998
Q ss_pred cCC------CCEEEEEEC-CCcEEEEEcCCcceeeeeeec-CcceeEEEecC-CC--eEEEeeCCCcEEEEEcccCCCce
Q 047728 229 SED------QNLLYSASW-DKTFKVWRTSDYKCLESVIAH-DDAVNSIVAGF-DG--LVFTGSADGTVKVWRRELQGKGT 297 (474)
Q Consensus 229 ~~~------~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~-~~--~l~~~~~dg~i~iwd~~~~~~~~ 297 (474)
.+. ..+++.|.+ |++|+|+++.+.+.+....-. .....++.+.. ++ +|+.|-.||.+..+.+.... +.
T Consensus 562 ~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~t-g~ 640 (1158)
T 3ei3_A 562 TPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIET-GL 640 (1158)
T ss_dssp CCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTT-CC
T ss_pred ecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCC-Cc
Confidence 763 368999997 999999999877665443221 12334443321 23 78999999998777665321 11
Q ss_pred eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEec--CCEEEEEeCCCcEE
Q 047728 298 KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTA--GNLVFSGSADMSIC 375 (474)
Q Consensus 298 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sgs~dg~i~ 375 (474)
.........+ ..++.-..+...+..-+.+..+.-..+|.-+............-..+..|+.. .+-++..+ ++.++
T Consensus 641 l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~Lr 718 (1158)
T 3ei3_A 641 LSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLT 718 (1158)
T ss_dssp EEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEE
T ss_pred cccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEEc-CCceE
Confidence 1111111222 23444334443333222223334444443332211100000001122333321 34444333 55699
Q ss_pred EEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728 376 IWRRKENEHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 376 iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
|..+...+...+..+.- ...+..++++|+.+
T Consensus 719 I~~i~~~~~~~~~~ipL-~~Tprri~y~~~~~ 749 (1158)
T 3ei3_A 719 IGTIDEIQKLHIRTVPL-YESPRKICYQEVSQ 749 (1158)
T ss_dssp EEEECCSSSEEEEEEEC-SSEEEEEEEEGGGT
T ss_pred EEEecccCCeeEEEEeC-CCCceEEEEcCCCC
Confidence 99886554444444443 35789999999877
No 308
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.25 E-value=0.05 Score=49.19 Aligned_cols=186 Identities=12% Similarity=0.117 Sum_probs=92.5
Q ss_pred CCCEEEEEEC----C-----CcEEEEEcCCcceeee--eeecCcceeEEEecCCC-eEEEeeCC-----CcEEEEEcccC
Q 047728 231 DQNLLYSASW----D-----KTFKVWRTSDYKCLES--VIAHDDAVNSIVAGFDG-LVFTGSAD-----GTVKVWRRELQ 293 (474)
Q Consensus 231 ~~~~l~s~s~----d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~-~l~~~~~d-----g~i~iwd~~~~ 293 (474)
++.+++.|+. + ..+.+||..+.+-... +...... .+++.. ++ +++.|+.+ ..+.+||+...
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR-IGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT-CEEEEE-TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccc-cEEEEE-CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 4555666654 2 4688899877653222 1111111 122222 44 66666644 35778887643
Q ss_pred CCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-----CcEEEeecCcccccce-eeeecceeeEEEEecCCEEEE
Q 047728 294 GKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-----GLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFS 367 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~s 367 (474)
.- ...............+.+ ++.+++.|+.+ ..+.+||+.+..-... ..........+...++.+++.
T Consensus 148 ~W----~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 221 (308)
T 1zgk_A 148 EW----HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAA 221 (308)
T ss_dssp EE----EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred eE----eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEE
Confidence 21 111111111122222222 56677777654 4588898876532111 111111112333447777777
Q ss_pred EeCC-----CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC-----CcEEEEEccCC
Q 047728 368 GSAD-----MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD-----KSVKMWRVSEQ 434 (474)
Q Consensus 368 gs~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D-----g~i~vw~~~~~ 434 (474)
|+.+ ..+.+||+.+.+...+..+.........+. -++. +++.|+.+ ..|.+||+.+.
T Consensus 222 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~--------i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 222 GGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGR--------IYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTE--------EEEECCBCSSCBCCEEEEEETTTT
T ss_pred eCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCE--------EEEEcCcCCCcccceEEEEcCCCC
Confidence 7764 569999999887554433322221222222 2455 67777654 34777887654
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.22 E-value=0.13 Score=47.47 Aligned_cols=101 Identities=13% Similarity=0.237 Sum_probs=55.7
Q ss_pred CEEEEEec-CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728 150 LVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM 228 (474)
Q Consensus 150 ~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 228 (474)
.-..++|. +..|+.+..+|.|++++ .++.. .+...+ ++.........|+|
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~---~~~~~~------------------------v~~~g~~~p~gia~ 82 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLS---TYAELS------------------------VYHRGESGLLGLAL 82 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEE---EEEECC------------------------CCCSTTCSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCcc---Eeecce------------------------EeecCCCCceeEEE
Confidence 45678886 33566667778888887 33211 111000 01112346789999
Q ss_pred cCC---CCEEEEEEC-C-----CcEEEEEcCCcc-----ee-eeee---ecCcceeEEEecCCCeEEEe
Q 047728 229 SED---QNLLYSASW-D-----KTFKVWRTSDYK-----CL-ESVI---AHDDAVNSIVAGFDGLVFTG 279 (474)
Q Consensus 229 ~~~---~~~l~s~s~-d-----g~i~iwd~~~~~-----~~-~~~~---~~~~~v~~v~~~~~~~l~~~ 279 (474)
+|+ +..|+.+.. . ..|..++..... .+ ..+. ........++|.|+|.|+.+
T Consensus 83 ~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 83 HPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT 151 (352)
T ss_dssp CTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred CCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence 998 556655543 2 668888876432 11 1122 11123468999999944443
No 310
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.19 E-value=0.23 Score=49.72 Aligned_cols=199 Identities=11% Similarity=0.057 Sum_probs=115.0
Q ss_pred cCCeeEEEecCCCCEEEEEE-CCCcEEEEEcCCcceeee-eeecCcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCC
Q 047728 220 FDAISSLSMSEDQNLLYSAS-WDKTFKVWRTSDYKCLES-VIAHDDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGK 295 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~-~~~~~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~ 295 (474)
......|+|++.+..|+.+. ..+.|..+++........ +...-.....+++.+.+ ++++-...+.|.+.++.....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 34577899999777777665 457788888865432222 22222567889998854 555556678899999864321
Q ss_pred ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC--CCcEEEeecCcccccceee--eecceeeEEEEecCCEEEEEe-C
Q 047728 296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS--DGLVNFWERELNLSHGGVL--RGHKLAILCLVTAGNLVFSGS-A 370 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~l~sgs-~ 370 (474)
. ......-.....|+++|.+..|+.... .+.|...+++..... .+. ......-+++.++++.|+.+. .
T Consensus 119 --~----~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~-~l~~~~~~~P~Glald~~~~~LY~aD~~ 191 (619)
T 3s94_A 119 --K----VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-IIINSEIYWPNGLTLDYEEQKLYWADAK 191 (619)
T ss_dssp --E----EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEETT
T ss_pred --E----EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE-EEEeCCCCCCcEEEEEccCCEEEEEeCC
Confidence 1 111133445778999997666665543 356776766543221 111 112233467777666665554 5
Q ss_pred CCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 371 DMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 371 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
.+.|..+|+.......+ ..+......+|++..+ . ++++-...+.|...|..+++.
T Consensus 192 ~~~I~~~~~dG~~~~~~--~~~~~~~P~gi~~~~~-~--------ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 192 LNFIHKSNLDGTNRQAV--VKGSLPHPFALTLFED-I--------LYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp TCCEEEESSSCCEEC-----------CCCEEESSS-E--------EEEECTTTCSEEEEESSSCCC
T ss_pred CCeEEEecCCCCccEEE--EeCCCCCceEEEEeCC-E--------EEEecCCCCEEEEEECCCCcc
Confidence 67899999876543222 1111222346677655 3 666767778888888876643
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.13 E-value=0.067 Score=49.50 Aligned_cols=243 Identities=8% Similarity=-0.032 Sum_probs=118.3
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcc-eeeeee---ecCcceeEEEecCC----CeEEEeeC----C----C
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYK-CLESVI---AHDDAVNSIVAGFD----GLVFTGSA----D----G 283 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~v~~~~~----~~l~~~~~----d----g 283 (474)
-.....|+|.|+++ |+++..++.|+++| .+++ .+..+. ........|+++|+ +.|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999987 55556779999997 4454 222111 12345789999997 55544433 2 5
Q ss_pred cEEEEEcccCCCce--eeeeeeeee-cccccEEEEEEcCCCCEEEEEcC-------------CCcEEEeecCccc-----
Q 047728 284 TVKVWRRELQGKGT--KHFFSQTLL-KQECAVTALAISPDAAIVYCGSS-------------DGLVNFWERELNL----- 342 (474)
Q Consensus 284 ~i~iwd~~~~~~~~--~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~-------------dg~i~v~d~~~~~----- 342 (474)
.|..|+........ ...+..... ........|+|.|+|.++++.+. .|.|.-++.+...
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 56666655321111 111111111 11223467999999987666432 2456666654321
Q ss_pred --ccceeeeecce-eeEEEEe-cCCEEEEEeCCC---cEEEEECCC--------C------ceEEEEeecCCccceEEEE
Q 047728 343 --SHGGVLRGHKL-AILCLVT-AGNLVFSGSADM---SICIWRRKE--------N------EHICLSMLTGHSGPVKCLA 401 (474)
Q Consensus 343 --~~~~~~~~~~~-~v~~~~~-~~~~l~sgs~dg---~i~iwd~~~--------~------~~~~~~~~~~h~~~v~~l~ 401 (474)
.......++.. .-+++.+ ++.++++-.... .|.+...-. + ....+..+.........++
T Consensus 186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 01122233332 2366777 455444332211 233322100 0 0011223311223577888
Q ss_pred EeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728 402 VEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 402 ~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
|........ -+..++++.-..+.|...++....... .....+.+....+..+ ++.|||.+.+.
T Consensus 266 ~y~g~~fp~-~~G~l~v~~~~~~~v~~~~~~~~g~~~---~~~~~~~~~~~rp~~v----~~~pDG~lyv~ 328 (354)
T 3a9g_A 266 FVHGDMFPG-LRGWLLIACLRGSMLAAVNFGDNMEVR---KISTFFKNVFGRLRDV----VIDDDGGILIS 328 (354)
T ss_dssp ECCSSSCGG-GTTEEEEEETTTTEEEEEEECGGGCEE---EEEEECTTTSCCEEEE----EECTTSCEEEE
T ss_pred EECCCCCcc-cCCcEEEEEcCCCEEEEEEECCCCccc---ceeeeccCCCCCeeEE----EECCCCcEEEE
Confidence 853221111 111266666667778888876431110 0011122223445566 66788887664
No 312
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.09 E-value=0.0039 Score=63.58 Aligned_cols=173 Identities=9% Similarity=-0.020 Sum_probs=92.9
Q ss_pred eeEEEecCCCCEE-EEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEeeC--CCcEEEEEcccCCCcee
Q 047728 223 ISSLSMSEDQNLL-YSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGSA--DGTVKVWRRELQGKGTK 298 (474)
Q Consensus 223 V~~l~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~--dg~i~iwd~~~~~~~~~ 298 (474)
...|++.+.+..| ++-...+.|.++++........+.........|++.|.+ .|+.... .+.|..+++..... .
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~ 532 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--Y 532 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--C
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--e
Confidence 4567887644444 444456889999986544333333233456788998865 4444432 26777776653221 1
Q ss_pred eeeeeeeecccccEEEEEEcCCCCEE-EEEcCCCcEEEeecCcccccceeeee--cceeeEEEEecCCEE-EEEeCCCcE
Q 047728 299 HFFSQTLLKQECAVTALAISPDAAIV-YCGSSDGLVNFWERELNLSHGGVLRG--HKLAILCLVTAGNLV-FSGSADMSI 374 (474)
Q Consensus 299 ~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~l-~sgs~dg~i 374 (474)
......-.....|+|+|++..| ++-...+.|.++++...... .+... .......+..++..| ++-...+.|
T Consensus 533 ----~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~~~P~glavd~~~lywtd~~~~~V 607 (699)
T 1n7d_A 533 ----SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 607 (699)
T ss_dssp ----EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EECCCSSSCSSCCCCEEETTEEEEECSTTTCE
T ss_pred ----EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-EEEecCCcCCCceEeEEECCEEEEEeCCCCeE
Confidence 1111123346789999975544 44456678999998653222 12111 111122333344444 444566889
Q ss_pred EEEECCCCceEEEEeecCCccceEEEEEee
Q 047728 375 CIWRRKENEHICLSMLTGHSGPVKCLAVEK 404 (474)
Q Consensus 375 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~ 404 (474)
..++..+++. +..+.........|++.+
T Consensus 608 ~~~d~~~G~~--~~~i~~~~~~P~~i~v~~ 635 (699)
T 1n7d_A 608 FSANRLTGSD--VNLLAENLLSPEDMVLFH 635 (699)
T ss_dssp EEEETTTEEE--EECCCTTCSSCCCCCBCS
T ss_pred EEEEccCCCc--eEEeecCCCCCcEEEEeC
Confidence 9999877663 334433222344554443
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.07 E-value=0.2 Score=46.87 Aligned_cols=198 Identities=11% Similarity=0.125 Sum_probs=126.8
Q ss_pred EEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeee
Q 047728 225 SLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQT 304 (474)
Q Consensus 225 ~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 304 (474)
+.-.+|..+.|+.=. ..++.|+|+++.+.+..+.-.+ .|.-=.|-.+..|+.. .+..|.-|++.......+. +...
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lV-T~taVyHWsi~~~s~P~kv-FdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKM-FDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEE-CSSEEEEEESSSSCCCEEE-EECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEE-cCCeeEEecccCCCCchhh-eecc
Confidence 344577777666554 6889999999998888876544 4555566555544433 3567999998753332222 2222
Q ss_pred eecccccEEEEEEcCCCCEEEEEcC-------CCcEEEeecCcccccceeeeecceeeEEEEecCC-----EEEEEeC--
Q 047728 305 LLKQECAVTALAISPDAAIVYCGSS-------DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGN-----LVFSGSA-- 370 (474)
Q Consensus 305 ~~~~~~~v~~l~~~~~~~~l~~~~~-------dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~sgs~-- 370 (474)
..-....|..-..+++.++++..+- .|.+.+|..+.+ ..+.+.+|......+..+|+ +++-+..
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~ 223 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ 223 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--CEEEECCSEEEEEEEECTTCSSEEEEEEEEECST
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--ccchheeeeeeeEEEecCCCCCCceEEEEEEecC
Confidence 1223567888888999998775432 467889988765 44677888877777666543 3444443
Q ss_pred -CCcEEEEECCCC---ce----EEEEee---cCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCC
Q 047728 371 -DMSICIWRRKEN---EH----ICLSML---TGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAP 436 (474)
Q Consensus 371 -dg~i~iwd~~~~---~~----~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~ 436 (474)
.+.++|-++... .. ..+..+ ..-.+--.++..++... +++.-+.-|.|.+||+.++..
T Consensus 224 ~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg--------viyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD--------VVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT--------EEEEEETTSEEEEEETTTCCE
T ss_pred CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC--------EEEEEecCceEEEEeccccee
Confidence 278999988543 10 001111 11233455677777776 788888899999999999843
No 314
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.99 E-value=0.063 Score=51.71 Aligned_cols=159 Identities=11% Similarity=0.074 Sum_probs=92.7
Q ss_pred CCeeEEEecC-CCCEEEEEEC-CCcEEEEEcCCcceeeeeeec---CcceeEEEe-------cCCC-eEEEeeCCC----
Q 047728 221 DAISSLSMSE-DQNLLYSASW-DKTFKVWRTSDYKCLESVIAH---DDAVNSIVA-------GFDG-LVFTGSADG---- 283 (474)
Q Consensus 221 ~~V~~l~~~~-~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~---~~~v~~v~~-------~~~~-~l~~~~~dg---- 283 (474)
.....|+|.| +...|+.+.. .+.|++.|+.++.....+... ......++| .+++ .|+++...+
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 3567899998 3555555544 467999998876655444321 234788999 9988 466665554
Q ss_pred ---cEEEEEcccCCCceeeeeeeeeecccccEEEEEEcC-CCCEEEEEcCCCcEEEeecC-------cccc---------
Q 047728 284 ---TVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISP-DAAIVYCGSSDGLVNFWERE-------LNLS--------- 343 (474)
Q Consensus 284 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~v~d~~-------~~~~--------- 343 (474)
.|.+++...............+. .......++++| ++.++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 25566533311111000000111 122345778999 55666667778889999987 3332
Q ss_pred --cceeee---ecceeeEEEEecCCEEEEE-eCCCcEEEEECC
Q 047728 344 --HGGVLR---GHKLAILCLVTAGNLVFSG-SADMSICIWRRK 380 (474)
Q Consensus 344 --~~~~~~---~~~~~v~~~~~~~~~l~sg-s~dg~i~iwd~~ 380 (474)
...+.. .....-+++++++++|+.+ ...+.|+.++..
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 001111 1223458888999965555 456788886654
No 315
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.98 E-value=0.11 Score=48.46 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=78.9
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEEcCCcc------------eeeeeee------cCcceeEEEecCCC----eEEEe
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYK------------CLESVIA------HDDAVNSIVAGFDG----LVFTG 279 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~------------~~~~~~~------~~~~v~~v~~~~~~----~l~~~ 279 (474)
.|..+..+|+|++|+..+ +..|.|..+..+. ....+.- ...+|..+.|+|-+ .|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 567799999999999886 4679998886321 1112222 24679999999976 79999
Q ss_pred eCCCcEEEEEcccCCCceeeeeeee-----eecccccEEEEEEcCCCCEEEEEc--CCCcEEEe
Q 047728 280 SADGTVKVWRRELQGKGTKHFFSQT-----LLKQECAVTALAISPDAAIVYCGS--SDGLVNFW 336 (474)
Q Consensus 280 ~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~v~~l~~~~~~~~l~~~~--~dg~i~v~ 336 (474)
..|+.|++||+........ .+... .......|.+++|..++-.|++.+ ..|.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999986332211 11111 112236799999999988888755 88888754
No 316
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.95 E-value=0.21 Score=45.11 Aligned_cols=153 Identities=10% Similarity=0.094 Sum_probs=75.7
Q ss_pred CCCCEEEEEEC----C-------CcEEEEEcCCcceeeeeeec-CcceeEEEecCCCeEEEeeCC--------CcEEEEE
Q 047728 230 EDQNLLYSASW----D-------KTFKVWRTSDYKCLESVIAH-DDAVNSIVAGFDGLVFTGSAD--------GTVKVWR 289 (474)
Q Consensus 230 ~~~~~l~s~s~----d-------g~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~l~~~~~d--------g~i~iwd 289 (474)
.++.+++.|+. + ..+.+||..+.+-...-... ...-.+++...+..++.|+.+ ..+.+||
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d 123 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYD 123 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEEC
Confidence 46677777773 1 12778888776532211111 111112222322266666632 3478888
Q ss_pred cccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-C-----CcEEEeecCcccccc-eeeeecceeeEEEEecC
Q 047728 290 RELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-D-----GLVNFWERELNLSHG-GVLRGHKLAILCLVTAG 362 (474)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d-----g~i~v~d~~~~~~~~-~~~~~~~~~v~~~~~~~ 362 (474)
+.... ................+. -++++++.|+. + ..+.+||..+..-.. ...........+...++
T Consensus 124 ~~~~~----W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 197 (315)
T 4asc_A 124 RLSFK----WGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDG 197 (315)
T ss_dssp TTTTE----EEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETT
T ss_pred CCCCc----EeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECC
Confidence 76432 111111111111222222 35667777765 2 468889987653211 11111111223344577
Q ss_pred CEEEEEeCCC-----cEEEEECCCCceEEEE
Q 047728 363 NLVFSGSADM-----SICIWRRKENEHICLS 388 (474)
Q Consensus 363 ~~l~sgs~dg-----~i~iwd~~~~~~~~~~ 388 (474)
++++.|+.++ .+.+||..+.+...+.
T Consensus 198 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 228 (315)
T 4asc_A 198 RIIVAAGVTDTGLTSSAEVYSITDNKWAPFE 228 (315)
T ss_dssp EEEEEEEECSSSEEEEEEEEETTTTEEEEEC
T ss_pred EEEEEeccCCCCccceEEEEECCCCeEEECC
Confidence 7888887654 5889999888765443
No 317
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.89 E-value=0.51 Score=48.60 Aligned_cols=243 Identities=9% Similarity=0.055 Sum_probs=127.4
Q ss_pred cEEEEEEc-CCEEEEeeCCCcEEEEeCCccccccc-------cCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcce
Q 047728 112 HIYSLAAA-GDLLYTGSDSKNIRVWKNQREFSGFK-------SNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDASI 182 (474)
Q Consensus 112 ~i~~~~~~-~~~l~tgs~dg~v~vwd~~~~~~~~~-------~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~~ 182 (474)
.|+++..+ ...|..|+..| +.++........+. .....|.++..+ ...|..|..+| +..++..++....
T Consensus 280 ~i~~i~~D~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~ 357 (758)
T 3ott_A 280 IIWNIFADQEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHD 357 (758)
T ss_dssp CEEEEEECTTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCC
T ss_pred eEEEEEEcCCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccce
Confidence 48888877 33566666666 54443322221110 123468888776 55677777665 5556554432111
Q ss_pred eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee-e-
Q 047728 183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI-A- 260 (474)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~- 260 (474)
........ ....+ ....|.++.-..++.+- .|+. +-|..+|..+++...... .
T Consensus 358 ~~~~~~~~---------------------~~~~l--~~~~v~~i~~d~~g~lW-igt~-~GL~~~~~~~~~~~~~~~~~~ 412 (758)
T 3ott_A 358 AIWYRMGD---------------------KTYPL--SHNRIRHIYEDKEQQLW-IATD-GSINRYDYATRQFIHYNIVDN 412 (758)
T ss_dssp CEEECTTC---------------------SSSCC--SCSCEEEEEECTTSCEE-EEET-TEEEEEETTTTEEEEEEEECC
T ss_pred eEEeccCC---------------------cCCCC--CCCceEEEEECCCCCEE-EEeC-CcHhhcCcCCCcEEEeecCCC
Confidence 00000000 00000 23468888877777644 4554 569999988765433211 1
Q ss_pred ----cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCC--Cceeeeeeee---eec-ccccEEEEEEcCCCCEEEEEcCC
Q 047728 261 ----HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQG--KGTKHFFSQT---LLK-QECAVTALAISPDAAIVYCGSSD 330 (474)
Q Consensus 261 ----~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~---~~~-~~~~v~~l~~~~~~~~l~~~~~d 330 (474)
....|.++....++.|..|+..+-|.++|..... .......... ..+ ....|.++..++++.+.+.++..
T Consensus 413 ~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~ 492 (758)
T 3ott_A 413 TGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNN 492 (758)
T ss_dssp C--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTC
T ss_pred cCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCC
Confidence 1345788888888888888887788888865310 0000000000 011 22358999999999877644444
Q ss_pred CcEEEeecCcccccceeee---ecceeeEEEEec-CCEEEEEeCCCcEEEEECCCCc
Q 047728 331 GLVNFWERELNLSHGGVLR---GHKLAILCLVTA-GNLVFSGSADMSICIWRRKENE 383 (474)
Q Consensus 331 g~i~v~d~~~~~~~~~~~~---~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~ 383 (474)
+-|..||..+.... .... .....+.++..+ ...|..|+.+ -+..||..+.+
T Consensus 493 ~Gl~~~d~~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~lWigt~~-Gl~~~~~~~~~ 547 (758)
T 3ott_A 493 KGIDKINPRTREVT-KLFADELTGEKSPNYLLCDEDGLLWVGFHG-GVMRINPKDES 547 (758)
T ss_dssp SSEEEEETTTTEEE-EECTTTSCGGGCEEEEEECTTSCEEEEETT-EEEEECC--CC
T ss_pred CCcEEEeCCCCceE-EecCCCcCCCcccceEEECCCCCEEEEecC-ceEEEecCCCc
Confidence 55888887654322 1110 012334555543 2344455554 48888876554
No 318
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.87 E-value=0.52 Score=48.52 Aligned_cols=304 Identities=13% Similarity=0.196 Sum_probs=150.8
Q ss_pred CcEEEEEEc-CCEEEEeeCCCcEEEEeCCcc-cccc-ccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeee-
Q 047728 111 GHIYSLAAA-GDLLYTGSDSKNIRVWKNQRE-FSGF-KSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRV- 186 (474)
Q Consensus 111 ~~i~~~~~~-~~~l~tgs~dg~v~vwd~~~~-~~~~-~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~- 186 (474)
..|.++..+ ...|..|+.+| +..||.... +... ......|.++...++.|..++.+| |..++..+.+.......
T Consensus 63 ~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~ 140 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALNG-LYTYQLQSRKLTSFDTRR 140 (758)
T ss_dssp SCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETTE-EEEEETTTCCEEEECHHH
T ss_pred ceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCCc-ceeEeCCCCeEEEeccCC
Confidence 357887766 55777888776 778885432 1111 112335777766667788887774 77888766543221000
Q ss_pred cccCccceeeeeecCCCCeEEEe--------eeccceeee---------ccCCeeEEEecCCCCEEEEEECCCcEEEEEc
Q 047728 187 GTLPTFKDFIKCSMKPSNYIEVR--------RHRNGLWIK---------HFDAISSLSMSEDQNLLYSASWDKTFKVWRT 249 (474)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~---------h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~ 249 (474)
..++. ..+.....+....+.+. ......+.. ....|.++....++..|..|+. +-|..+|.
T Consensus 141 ~~l~~-~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~ 218 (758)
T 3ott_A 141 NGLPN-NTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFP 218 (758)
T ss_dssp HCCSC-SCEEEEEECTTCCEEEEETTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEET
T ss_pred CCcCC-CeEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcC
Confidence 00110 01111111111111111 001111110 1123788887777776666664 45888998
Q ss_pred CCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeee---eecccccEEEEEEcCCCCEEEE
Q 047728 250 SDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQT---LLKQECAVTALAISPDAAIVYC 326 (474)
Q Consensus 250 ~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~l~~ 326 (474)
.+++...........|.++....++.|..|+.+ -|.+++...... ....... ..-....|.++..+.++.+-+
T Consensus 219 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi- 294 (758)
T 3ott_A 219 STGQIKQTEAFHNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPL--QHIIHDSRNIQSLTNNIIWNIFADQEHNIWL- 294 (758)
T ss_dssp TTTEEEEEEEEEEEEEEEEEECTTCCEEEEETT-EEEEECCTTSCC--EEECCCTTCTTSCSCSCEEEEEECTTCCEEE-
T ss_pred CCCeEEeccCCCCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcE--EEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-
Confidence 776543222222456888888888877777754 577787653321 0000000 011234689999888877555
Q ss_pred EcCCCcEEEeecCcccccceee----eecceeeEEEEec-CCEEEEEeCCCcEEEEECCCCceEEEEeec-------CCc
Q 047728 327 GSSDGLVNFWERELNLSHGGVL----RGHKLAILCLVTA-GNLVFSGSADMSICIWRRKENEHICLSMLT-------GHS 394 (474)
Q Consensus 327 ~~~dg~i~v~d~~~~~~~~~~~----~~~~~~v~~~~~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-------~h~ 394 (474)
|+..| +.++............ ......+.++..+ ...|..|+.+| +..++..+++......+. -..
T Consensus 295 GT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 372 (758)
T 3ott_A 295 GTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSH 372 (758)
T ss_dssp EESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSC
T ss_pred EeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCC
Confidence 55556 5444332211110000 0012345666554 33455566554 666665543211011111 012
Q ss_pred cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 395 GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
..|.++.-..++. |..|+. +-|..|+..++
T Consensus 373 ~~v~~i~~d~~g~---------lWigt~-~GL~~~~~~~~ 402 (758)
T 3ott_A 373 NRIRHIYEDKEQQ---------LWIATD-GSINRYDYATR 402 (758)
T ss_dssp SCEEEEEECTTSC---------EEEEET-TEEEEEETTTT
T ss_pred CceEEEEECCCCC---------EEEEeC-CcHhhcCcCCC
Confidence 3578887777765 334443 45777776543
No 319
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.85 E-value=0.12 Score=47.61 Aligned_cols=148 Identities=9% Similarity=-0.023 Sum_probs=65.3
Q ss_pred CcEEEEEcCCcceeeeeeecC-cce-eEEEecCCCeEEEeeC------CCcEEEEEcccCCCceeeeeeeeeecccccEE
Q 047728 242 KTFKVWRTSDYKCLESVIAHD-DAV-NSIVAGFDGLVFTGSA------DGTVKVWRRELQGKGTKHFFSQTLLKQECAVT 313 (474)
Q Consensus 242 g~i~iwd~~~~~~~~~~~~~~-~~v-~~v~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 313 (474)
..+.+||..+.+-...-.... ..- .+++...+.+++.|+. ...+.+||+...... ...............
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~--W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK--WNKLAPVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CE--EEECCCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCc--EEecCCCCCCccccc
Confidence 578899988765333211111 111 2333333336666654 345667776322221 111111111111111
Q ss_pred EEEEcCCCCEEEEEcCC----------------------CcEEEeecCcccccce-eeeecceeeEEEEecCCEEEEEeC
Q 047728 314 ALAISPDAAIVYCGSSD----------------------GLVNFWERELNLSHGG-VLRGHKLAILCLVTAGNLVFSGSA 370 (474)
Q Consensus 314 ~l~~~~~~~~l~~~~~d----------------------g~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~l~sgs~ 370 (474)
..+...++.+++.|+.+ ..+.+||+.+..-... .+........++..++++++.|+.
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 325 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGE 325 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeee
Confidence 11222356677777632 2467888876532211 111111223445567888888885
Q ss_pred CC------cEEEEECCCCceEEEEeec
Q 047728 371 DM------SICIWRRKENEHICLSMLT 391 (474)
Q Consensus 371 dg------~i~iwd~~~~~~~~~~~~~ 391 (474)
++ .|.++++++++......+.
T Consensus 326 ~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 326 TAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp CGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred CCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 53 3556688877755433333
No 320
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.82 E-value=0.49 Score=47.35 Aligned_cols=191 Identities=8% Similarity=0.089 Sum_probs=101.9
Q ss_pred cEEEEEEc--CCEEE-EeeCCCcEEEEeCCcc---ccccccCccCEEEEEec--CCEEE-EEeCCCeEEEEecCCCCcce
Q 047728 112 HIYSLAAA--GDLLY-TGSDSKNIRVWKNQRE---FSGFKSNSGLVKAIVIS--NEKIF-SGHQDGKIRVWKVSSKDASI 182 (474)
Q Consensus 112 ~i~~~~~~--~~~l~-tgs~dg~v~vwd~~~~---~~~~~~h~~~V~~i~~~--~~~l~-s~~~dg~i~vwd~~~~~~~~ 182 (474)
....++++ ++.|+ +-...+.|..++.... ...+.........++++ ++.|+ +-...+.|.+.+++......
T Consensus 41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~ 120 (619)
T 3s94_A 41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 120 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEE
Confidence 35666665 44444 4444677777775432 12222233467778876 45554 44567889999987653321
Q ss_pred eeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEEC--CCcEEEEEcCCcceeeeeee
Q 047728 183 HKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASW--DKTFKVWRTSDYKCLESVIA 260 (474)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~ 260 (474)
.. .........|++.|.+..|+.... .+.|...++...........
T Consensus 121 l~--------------------------------~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 121 LF--------------------------------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp EE--------------------------------CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EE--------------------------------eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC
Confidence 10 012334668999997666766654 35666667653322222222
Q ss_pred cCcceeEEEecCCC-eEE-EeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeec
Q 047728 261 HDDAVNSIVAGFDG-LVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWER 338 (474)
Q Consensus 261 ~~~~v~~v~~~~~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~ 338 (474)
.-...+.|++.+++ .|+ +-...+.|..+|+..... .. ... ........+++..+ .++++-...+.|...|.
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~--~~-~~~---~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~ 241 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR--QA-VVK---GSLPHPFALTLFED-ILYWTDWSTHSILACNK 241 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE--C-------------CCCEEESSS-EEEEECTTTCSEEEEES
T ss_pred CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc--EE-EEe---CCCCCceEEEEeCC-EEEEecCCCCEEEEEEC
Confidence 33457889999865 444 444567788887753211 11 111 11122345666655 44444445667877776
Q ss_pred Ccc
Q 047728 339 ELN 341 (474)
Q Consensus 339 ~~~ 341 (474)
.++
T Consensus 242 ~tg 244 (619)
T 3s94_A 242 YTG 244 (619)
T ss_dssp SSC
T ss_pred CCC
Confidence 544
No 321
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.79 E-value=0.31 Score=44.64 Aligned_cols=238 Identities=13% Similarity=0.045 Sum_probs=119.8
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee--ee----eecCcceeEEEecCC----CeEEEe---eCCCcE
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE--SV----IAHDDAVNSIVAGFD----GLVFTG---SADGTV 285 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~----~~~~~~v~~v~~~~~----~~l~~~---~~dg~i 285 (474)
.-...+.|+|.|++.++++--..|.|++++..+++... .+ .........|+++|+ +.|++. ..++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 45567899999999876665448999999866554321 11 123456789999985 444432 234455
Q ss_pred EEEEcccCC----C-ceeeeeeeeee-cccccEEEEEEcCCCCEEEEEcC-------------CCcEEEeecCccc----
Q 047728 286 KVWRRELQG----K-GTKHFFSQTLL-KQECAVTALAISPDAAIVYCGSS-------------DGLVNFWERELNL---- 342 (474)
Q Consensus 286 ~iwd~~~~~----~-~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~-------------dg~i~v~d~~~~~---- 342 (474)
.-|.+.... . .....+...+. ........|+|.|++.+.++.+. .|.|.-++.+...
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 555554311 1 11111111111 22234567999999987776542 3455555554321
Q ss_pred ---ccceeeeecceee-EEEEecCCEEEEEe-CCCcEEEEECCCCce----------------EEEEeecCCccceEEEE
Q 047728 343 ---SHGGVLRGHKLAI-LCLVTAGNLVFSGS-ADMSICIWRRKENEH----------------ICLSMLTGHSGPVKCLA 401 (474)
Q Consensus 343 ---~~~~~~~~~~~~v-~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~----------------~~~~~~~~h~~~v~~l~ 401 (474)
.......+|.... +++.+++.+.++=. .|+.=.|--+..+.. ..+..+..+......++
T Consensus 190 Pf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~ 269 (347)
T 3das_A 190 PFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIA 269 (347)
T ss_dssp SSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEE
T ss_pred CCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceE
Confidence 0111223444333 66666665544321 222222222221110 01222222223556777
Q ss_pred EeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccccCCCCCcCCceeec
Q 047728 402 VEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLPYAPSFSSQGRICQK 472 (474)
Q Consensus 402 ~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~p~~s~Dg~~l~~ 472 (474)
|.. +. +++..-..+.|....+...... ......+.+...++..+ ...|||.+.+.
T Consensus 270 ~~~-g~--------~~~~~l~~~~l~~v~~~~~~~~---~~~e~~l~~~~gR~~dv----~~~pDG~lyv~ 324 (347)
T 3das_A 270 YAE-GS--------VWMAGLRGERLWRIPLKGTAAA---ADPQAFLEGEYGRLRTV----APAGGDKLWLV 324 (347)
T ss_dssp EET-TE--------EEEEESTTCSEEEEEEETTEES---SCCEEESTTTSSCEEEE----EEEETTEEEEE
T ss_pred EEc-Cc--------eeeccccCCEEEEEEecCCcee---cceEEeecCCCCCccEE----EECCCCcEEEE
Confidence 763 33 4555555566666666543211 11122333444566777 66778887765
No 322
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.73 E-value=0.14 Score=47.17 Aligned_cols=158 Identities=9% Similarity=0.075 Sum_probs=86.4
Q ss_pred ceeEEEecCCCeEEEee-------------CCCcEEEEEcccCCCceeeeeeee--eecccccEEEEEEcC--CCC--EE
Q 047728 264 AVNSIVAGFDGLVFTGS-------------ADGTVKVWRRELQGKGTKHFFSQT--LLKQECAVTALAISP--DAA--IV 324 (474)
Q Consensus 264 ~v~~v~~~~~~~l~~~~-------------~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~--~~~--~l 324 (474)
...++.+.++|.+++++ .+|.|.++|+.............. ..........+.+.+ ++. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566677777666655 689999999874322211111111 112345677777766 343 44
Q ss_pred EEEcC--CCcEEEeecCcccccceee---eec---ceeeEEEEecCCEEEEEeC-----------------CCcEEEEEC
Q 047728 325 YCGSS--DGLVNFWERELNLSHGGVL---RGH---KLAILCLVTAGNLVFSGSA-----------------DMSICIWRR 379 (474)
Q Consensus 325 ~~~~~--dg~i~v~d~~~~~~~~~~~---~~~---~~~v~~~~~~~~~l~sgs~-----------------dg~i~iwd~ 379 (474)
++-.. +..|.+|+++......... .+. ...-..+.++|.+.++... .|.|.-+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 4678888765432221222 111 1222556677877776541 244555554
Q ss_pred CCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 380 KENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 380 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
++. ..+...-..-+.++|+||++. +.++-+..+.|..|++..
T Consensus 211 --~~~---~~~~~~l~~pNGia~spDg~~-------lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 211 --NDV---RVVAEGFDFANGINISPDGKY-------VYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp --TCC---EEEEEEESSEEEEEECTTSSE-------EEEEEGGGTEEEEEEECT
T ss_pred --CeE---EEeecCCcccCcceECCCCCE-------EEEEeCCCCeEEEEEECC
Confidence 331 122222345789999999973 444555678899999864
No 323
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.63 E-value=0.66 Score=46.44 Aligned_cols=194 Identities=11% Similarity=0.021 Sum_probs=115.0
Q ss_pred cCEEEEEec--CCEEE-EEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeE
Q 047728 149 GLVKAIVIS--NEKIF-SGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISS 225 (474)
Q Consensus 149 ~~V~~i~~~--~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 225 (474)
....+|+|+ ++.|+ +-..++.|..++++......... ........
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~--------------------------------~g~~~P~G 84 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE--------------------------------FGLDYPEG 84 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------------------------------SSCSCCCE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe--------------------------------CCCCCcce
Confidence 457788887 45555 44567888888887543221110 01134568
Q ss_pred EEecCCCCEEEEE-ECCCcEEEEEcCCcceeeeeeecCcceeEEEecCC-CeEEEeeC--CCcEEEEEcccCCCceeeee
Q 047728 226 LSMSEDQNLLYSA-SWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFD-GLVFTGSA--DGTVKVWRRELQGKGTKHFF 301 (474)
Q Consensus 226 l~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~-~~l~~~~~--dg~i~iwd~~~~~~~~~~~~ 301 (474)
|++.+.+..|+.+ ...+.|.+.++........+...-.....|++.|. +.|+.... .+.|...++.....
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~------ 158 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER------ 158 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce------
Confidence 8888765555554 45678999998654332222233455789999985 55555543 45666666653221
Q ss_pred eeeeecccccEEEEEEcCCCCEEEEEc-CCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEe-CCCcEEEEEC
Q 047728 302 SQTLLKQECAVTALAISPDAAIVYCGS-SDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS-ADMSICIWRR 379 (474)
Q Consensus 302 ~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~ 379 (474)
..+...-.....|++++++..|+.+. ..+.|..+|+..... ..+.........+..++..|+... ..+.|...|.
T Consensus 159 -~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 159 -TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANK 235 (628)
T ss_dssp -EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred -EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEEECCEEEEecCCCCEEEEEEC
Confidence 11122445688999999777666654 567899999876433 223222222344555555555555 5788888887
Q ss_pred CCCc
Q 047728 380 KENE 383 (474)
Q Consensus 380 ~~~~ 383 (474)
.+++
T Consensus 236 ~tg~ 239 (628)
T 4a0p_A 236 TSGQ 239 (628)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 6554
No 324
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=96.50 E-value=0.41 Score=42.46 Aligned_cols=224 Identities=17% Similarity=0.155 Sum_probs=123.0
Q ss_pred cCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728 149 GLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM 228 (474)
Q Consensus 149 ~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 228 (474)
..|..|+......+.-. ||.|..|-.......-. +. .....|..++.
T Consensus 24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~------p~--------------------------~~~~~i~~ia~ 70 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM------PA--------------------------ATQSGVDAIAA 70 (282)
T ss_dssp SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC------CG--------------------------GGGSCCCEEEE
T ss_pred CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC------Cc--------------------------cCCCCEEEEEe
Confidence 36778877766555556 99999997665332210 00 02235667766
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecc
Q 047728 229 SEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQ 308 (474)
Q Consensus 229 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 308 (474)
.... .++. . ||.|..|-....-.+..-..-...|..++......++. . ||.|..|-.....+.. .....
T Consensus 71 G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al-~-~G~v~~wG~n~~gqlg------~~~~~ 139 (282)
T 3qhy_B 71 GNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYAL-K-DGKVIAWGDDSDGQTT------VPAEA 139 (282)
T ss_dssp CSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEE-E-TTEEEEEECCTTSTTS------CCGGG
T ss_pred CCCE-EEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEE-e-CCeEEEecCCCCCcCC------CCccC
Confidence 5432 3333 4 89999997654322211111134677787765543333 4 9999999765433211 11122
Q ss_pred cccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEE
Q 047728 309 ECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKENEHICLS 388 (474)
Q Consensus 309 ~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 388 (474)
...|..++.......++ . ||.|..|-......+. ....-...+..++......+.- .||.|..|-....... .
T Consensus 140 ~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gql--g 212 (282)
T 3qhy_B 140 QSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQT--T 212 (282)
T ss_dssp GSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTT--C
T ss_pred CCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCCC-CceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCC--C
Confidence 34577776654433333 3 7999999765432221 1111234567777665555555 6999999976543211 1
Q ss_pred eecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 389 MLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 389 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
........|..|+-..... ++++ ||.|..|-....
T Consensus 213 ~p~~~~~~v~~i~~G~~h~--------~al~---~g~v~~wG~n~~ 247 (282)
T 3qhy_B 213 VPTEALSGVSAIASGEWYS--------LALK---NGKVIAWGSSRT 247 (282)
T ss_dssp CCGGGGSSCCEEEECSSCE--------EEEE---TTEEEEESTTCC
T ss_pred CCcccCCCceEEEcCCCEE--------EEEE---CCEEEEecCCCC
Confidence 1111223567776655443 3333 899999976654
No 325
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.39 E-value=0.53 Score=42.48 Aligned_cols=190 Identities=8% Similarity=0.080 Sum_probs=89.9
Q ss_pred cCCCCEEEEEEC----CC-------cEEEEEcCCcceeeeeeec-CcceeEEEecCCCeEEEeeCC-------CcEEEEE
Q 047728 229 SEDQNLLYSASW----DK-------TFKVWRTSDYKCLESVIAH-DDAVNSIVAGFDGLVFTGSAD-------GTVKVWR 289 (474)
Q Consensus 229 ~~~~~~l~s~s~----dg-------~i~iwd~~~~~~~~~~~~~-~~~v~~v~~~~~~~l~~~~~d-------g~i~iwd 289 (474)
..++.+++.|+. ++ .+.+||..+.+-...-... ...-.+++...+..++.|+.+ ..+.+||
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd 133 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYD 133 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEe
Confidence 346677777773 11 1778888765533221111 111122333323366666653 2366777
Q ss_pred cccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC------CCcEEEeecCcccccce-eeeecceeeEEEEecC
Q 047728 290 RELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS------DGLVNFWERELNLSHGG-VLRGHKLAILCLVTAG 362 (474)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~------dg~i~v~d~~~~~~~~~-~~~~~~~~v~~~~~~~ 362 (474)
+.... .. ..............+. .++.+++.|+. -..+.+||+.+..-... ..........+...++
T Consensus 134 ~~~~~--W~--~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 207 (318)
T 2woz_A 134 PVAAK--WS--EVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKG 207 (318)
T ss_dssp TTTTE--EE--EECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred CCCCC--Ee--ECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECC
Confidence 65321 11 1111111111111122 35667777764 23588899876532111 0111111123334567
Q ss_pred CEEEEEeCC-----CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCC--------------
Q 047728 363 NLVFSGSAD-----MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLD-------------- 423 (474)
Q Consensus 363 ~~l~sgs~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~D-------------- 423 (474)
.+++.|+.+ ..+.+||..+.+...+..+.........+ .-++. +++.|+.+
T Consensus 208 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~--------i~v~GG~~~~~~~~~~~~~~~~ 277 (318)
T 2woz_A 208 KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV--SLAGS--------LYAIGGFAMIQLESKEFAPTEV 277 (318)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE--EETTE--------EEEECCBCCBC----CCBCCBC
T ss_pred EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE--EECCE--------EEEECCeeccCCCCceecccee
Confidence 777777643 35778999888765443333222222222 22444 66776654
Q ss_pred CcEEEEEccCC
Q 047728 424 KSVKMWRVSEQ 434 (474)
Q Consensus 424 g~i~vw~~~~~ 434 (474)
..|.+||+.+.
T Consensus 278 ~~v~~yd~~~~ 288 (318)
T 2woz_A 278 NDIWKYEDDKK 288 (318)
T ss_dssp CCEEEEETTTT
T ss_pred eeEEEEeCCCC
Confidence 34777777664
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.34 E-value=0.56 Score=42.26 Aligned_cols=151 Identities=10% Similarity=0.032 Sum_probs=74.5
Q ss_pred CCCEEEEEECC--------CcEEEEEcCCcceeeeeeecC-cceeEEEecCCCeEEEeeC-C-----CcEEEEEcccCCC
Q 047728 231 DQNLLYSASWD--------KTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDGLVFTGSA-D-----GTVKVWRRELQGK 295 (474)
Q Consensus 231 ~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~ 295 (474)
++.+++.|+.+ ..+.+||..+.+-...-.... ..-.+++...+.+++.|+. + ..+.+||+....
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~- 176 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE- 176 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTE-
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCe-
Confidence 45566666632 458899988764322111111 1112223332336666765 2 458888876431
Q ss_pred ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC-----cEEEeecCccccccee-eeecceeeEEEEecCCEEEEEe
Q 047728 296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG-----LVNFWERELNLSHGGV-LRGHKLAILCLVTAGNLVFSGS 369 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~l~sgs 369 (474)
...............++.+ ++++++.|+.++ .+.+||+.+..-.... .........++..++.+++.|+
T Consensus 177 ---W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG 251 (315)
T 4asc_A 177 ---WKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGG 251 (315)
T ss_dssp ---EEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEE
T ss_pred ---EEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEEEECC
Confidence 1111111111111222222 567777777654 4788888765321111 1111112233445677777777
Q ss_pred CC--------------CcEEEEECCCCceEEE
Q 047728 370 AD--------------MSICIWRRKENEHICL 387 (474)
Q Consensus 370 ~d--------------g~i~iwd~~~~~~~~~ 387 (474)
.+ ..+.+||+.+.+...+
T Consensus 252 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 252 FATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred ccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 53 2467888888775533
No 327
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.30 E-value=0.66 Score=42.68 Aligned_cols=242 Identities=10% Similarity=0.019 Sum_probs=117.7
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee---eee----eecCcceeEEEecCC----CeEEEee-C------
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL---ESV----IAHDDAVNSIVAGFD----GLVFTGS-A------ 281 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~----~~~~~~v~~v~~~~~----~~l~~~~-~------ 281 (474)
-...+.|+|.|+++.|+++...|.|++++.. +... ..+ .........|+++|+ +.|++.. .
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3457899999999845556678999999853 3321 111 112345688999995 5444432 2
Q ss_pred -CCcEEEEEcccCCCc--eeeeeeeeee---cccccEEEEEEcCCCCEEEEEcC-------------CCcEEEeecCccc
Q 047728 282 -DGTVKVWRRELQGKG--TKHFFSQTLL---KQECAVTALAISPDAAIVYCGSS-------------DGLVNFWERELNL 342 (474)
Q Consensus 282 -dg~i~iwd~~~~~~~--~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~~~~~-------------dg~i~v~d~~~~~ 342 (474)
...|..|++...... ....+..... ........|+|.|++.++++.+. .|.|.-++.+...
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 224555555422111 1111111111 11122467999999966555433 2457667765321
Q ss_pred ------------ccceeeeeccee-eEEEEecCCEEEEEeCC--CcEEEEECCCCc------------------------
Q 047728 343 ------------SHGGVLRGHKLA-ILCLVTAGNLVFSGSAD--MSICIWRRKENE------------------------ 383 (474)
Q Consensus 343 ------------~~~~~~~~~~~~-v~~~~~~~~~l~sgs~d--g~i~iwd~~~~~------------------------ 383 (474)
.......++..+ -+++.+....|+++... +.=.|.-+..+.
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 111223344433 36667633444444322 111222111111
Q ss_pred -----eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCCCCCCCCcccccccCCCCCCCccc
Q 047728 384 -----HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQAPPLVSTTQQHPLEGHGVAPNSLP 458 (474)
Q Consensus 384 -----~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 458 (474)
...+..+.. ......++|....... .-...++++.-..+.|...++..+... .....+......+..+
T Consensus 256 ~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp-~~~g~l~v~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~rp~~v- 328 (353)
T 2g8s_A 256 IVAGTEQPVFYWKD-SPAVSGMAFYNSDKFP-QWQQKLFIGALKDKDVIVMSVNGDKVT----EDGRILTDRGQRIRDV- 328 (353)
T ss_dssp SCTTSCCCSEEESS-CCCEEEEEEECCSSSG-GGTTEEEEEETTTTEEEEEEEETTEEE----EEEEESGGGCCCEEEE-
T ss_pred CCCCccCCeEEeCC-CcCcceeEEECCccCc-ccCCcEEEEEccCCEEEEEEeCCCeEe----eeEEcccCCCCceeEE-
Confidence 001122222 2356778887533211 111126777667787887777643211 0111122222345566
Q ss_pred cCCCCCcCCceeec
Q 047728 459 YAPSFSSQGRICQK 472 (474)
Q Consensus 459 ~~p~~s~Dg~~l~~ 472 (474)
++.|||.+.+.
T Consensus 329 ---~~~pdG~lyv~ 339 (353)
T 2g8s_A 329 ---RTGPDGYLYVL 339 (353)
T ss_dssp ---EECTTSCEEEE
T ss_pred ---EECCCCcEEEE
Confidence 67889988763
No 328
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.30 E-value=0.43 Score=44.52 Aligned_cols=148 Identities=11% Similarity=0.099 Sum_probs=89.9
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCcceeeeeeec----CcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCceee-----
Q 047728 229 SEDQNLLYSASWDKTFKVWRTSDYKCLESVIAH----DDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKGTKH----- 299 (474)
Q Consensus 229 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----- 299 (474)
..++..++.+- ++.||.-++......+.++.. -..+..+..+|+|.+++-..+..|.|..+..+......
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence 44666666654 578888888755445555443 23678899999996555566778999988732211110
Q ss_pred -eeeeeee------cccccEEEEEEcC---CCCEEEEEcCCCcEEEeecCcccccceeee------e-----cceeeEEE
Q 047728 300 -FFSQTLL------KQECAVTALAISP---DAAIVYCGSSDGLVNFWERELNLSHGGVLR------G-----HKLAILCL 358 (474)
Q Consensus 300 -~~~~~~~------~~~~~v~~l~~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~------~-----~~~~v~~~ 358 (474)
....... ....+|..+.|+| .+..|++-..|+.|++||+.........+. + ......||
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence 0011111 1357899999999 567899999999999999986322111111 1 12223444
Q ss_pred EecCCEEEEEe--CCCcEEEE
Q 047728 359 VTAGNLVFSGS--ADMSICIW 377 (474)
Q Consensus 359 ~~~~~~l~sgs--~dg~i~iw 377 (474)
..++-.|+..+ .+|.|+-.
T Consensus 188 g~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CTTSSCEEEEECTTSCEEEEE
T ss_pred cCCCcEEEEEecCCCCCEEEE
Confidence 44555555544 77777644
No 329
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.082 Score=48.19 Aligned_cols=109 Identities=9% Similarity=-0.007 Sum_probs=64.4
Q ss_pred CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728 158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS 237 (474)
Q Consensus 158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 237 (474)
++.++.++.||.|.-.|..+++............ .+ ...... .+.+..++.
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p---~~---------------------~~~~~~-----~~~~~~~~v 60 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQP---LI---------------------EIQEPS-----RLETYETLI 60 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCC---SE---------------------ECCCSC-----TTTSSEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCC---cE---------------------EecCCc-----cccCCcEEE
Confidence 4578999999999999999888766554321000 00 000000 012223443
Q ss_pred E--ECCCcEEEEEcCCcceeeeeeec----CcceeE---EEe------cCCCeEEEeeCCCcEEEEEcccCCC
Q 047728 238 A--SWDKTFKVWRTSDYKCLESVIAH----DDAVNS---IVA------GFDGLVFTGSADGTVKVWRRELQGK 295 (474)
Q Consensus 238 ~--s~dg~i~iwd~~~~~~~~~~~~~----~~~v~~---v~~------~~~~~l~~~~~dg~i~iwd~~~~~~ 295 (474)
+ +.||.|..++..+|.....+... ..++.. ..+ +.++.+++|+.+|.+...|+++++.
T Consensus 61 v~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~ 133 (339)
T 2be1_A 61 IEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI 133 (339)
T ss_dssp ECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred EEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence 3 58999999998888655443321 111111 001 1456899999999999999987654
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.12 E-value=0.9 Score=42.53 Aligned_cols=234 Identities=10% Similarity=0.069 Sum_probs=131.9
Q ss_pred EEcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcc-eeeeecccCcc
Q 047728 117 AAAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDAS-IHKRVGTLPTF 192 (474)
Q Consensus 117 ~~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~ 192 (474)
.|..+.||.=. ..++.|+|++ ..+..+.-.. .|....|- .+.|+-.+.. .|.-|+++..... ..+....
T Consensus 74 nP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lVT~t-aVyHWsi~~~s~P~kvFdR~~---- 146 (494)
T 1bpo_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVTDN-AVYHWSMEGESQPVKMFDRHS---- 146 (494)
T ss_dssp CSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEECSS-EEEEEESSSSCCCEEEEECCG----
T ss_pred CCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEEcCC-eeEEecccCCCCchhheecch----
Confidence 34455555443 6789999965 3455555444 45566665 6666666544 6999999763221 1111100
Q ss_pred ceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-------CCCcEEEEEcCCcceeeeeeecCcce
Q 047728 193 KDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-------WDKTFKVWRTSDYKCLESVIAHDDAV 265 (474)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~~v 265 (474)
.+ ....|.....+++.++++..+ -.|.+.+|..+. +.-+.+.+|....
T Consensus 147 ----------------------~L--~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F 201 (494)
T 1bpo_A 147 ----------------------SL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASF 201 (494)
T ss_dssp ----------------------GG--TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEE
T ss_pred ----------------------hc--ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeee
Confidence 00 134566666777777776443 236788998765 4456677777665
Q ss_pred eEEEecCCC----eEEEeeC---CCcEEEEEcccCCCceeee---eeee---eecccccEEEEEEcCCCCEEEEEcCCCc
Q 047728 266 NSIVAGFDG----LVFTGSA---DGTVKVWRRELQGKGTKHF---FSQT---LLKQECAVTALAISPDAAIVYCGSSDGL 332 (474)
Q Consensus 266 ~~v~~~~~~----~l~~~~~---dg~i~iwd~~~~~~~~~~~---~~~~---~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 332 (474)
..+....+. .+..+.. .+.++|-++.........+ .... .....+-..++.+++....++.-+.-|.
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~ 281 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY 281 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSE
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCce
Confidence 555543222 2333333 2789999986431111111 0111 1123455678999999999999999999
Q ss_pred EEEeecCcccccceeee-ecceeeEEEEecCCEEEEEeCCCcEEEEECCCC
Q 047728 333 VNFWERELNLSHGGVLR-GHKLAILCLVTAGNLVFSGSADMSICIWRRKEN 382 (474)
Q Consensus 333 i~v~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~ 382 (474)
|++||++++..+..... .....+.+-.....=++.....|.|.--.++..
T Consensus 282 i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 282 IHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 99999999876543221 111222222223344444445665555555443
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.08 E-value=0.11 Score=43.85 Aligned_cols=107 Identities=7% Similarity=-0.016 Sum_probs=64.5
Q ss_pred CCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee------eeee--ecCcceeEEEecCCCeEEEeeCCCcEEEEEccc
Q 047728 221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL------ESVI--AHDDAVNSIVAGFDGLVFTGSADGTVKVWRREL 292 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------~~~~--~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~ 292 (474)
..+++++|+|++.+.++ .+|.+.-.+..+.... ..+- +.. .-.++.|.+++.|.++ .||.|.-++..+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence 36779999998875555 6787776665442211 1110 111 2478999999966666 679888776432
Q ss_pred CCCceeeeeee-ee--ecccccEEEEEEcCCCCEEEEEcCCCcEEE
Q 047728 293 QGKGTKHFFSQ-TL--LKQECAVTALAISPDAAIVYCGSSDGLVNF 335 (474)
Q Consensus 293 ~~~~~~~~~~~-~~--~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v 335 (474)
.... ...-. .. ...=..+..|.+.|+|.+.++. |+.++-
T Consensus 117 ~~~~--~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 117 SDTD--NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp STTC--CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred CCCC--ceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 2211 11111 11 1122467999999999988877 777543
No 332
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.77 E-value=1 Score=40.40 Aligned_cols=253 Identities=10% Similarity=0.094 Sum_probs=137.6
Q ss_pred CCcEEEEeCCccccccccCccCEEEEE-ecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEE
Q 047728 129 SKNIRVWKNQREFSGFKSNSGLVKAIV-ISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIE 207 (474)
Q Consensus 129 dg~v~vwd~~~~~~~~~~h~~~V~~i~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (474)
+..|.|-|+...-...+.--.+=.++- +....|+.-. ..++.++|+++.+.......
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~--------------------- 105 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--------------------- 105 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC---------------------
T ss_pred CCEEEEEECCCCCCccccccccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceec---------------------
Confidence 336888886543222211111111221 1233333333 67899999999866543332
Q ss_pred EeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCC-cceeeeeeecC----cceeEEEecCCC--eEEEee
Q 047728 208 VRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSD-YKCLESVIAHD----DAVNSIVAGFDG--LVFTGS 280 (474)
Q Consensus 208 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~----~~v~~v~~~~~~--~l~~~~ 280 (474)
...|.-=.|-. .+.|+-.+ +..|+-|++.. ..+.+.+..|. ..|..-..+++. .+++|-
T Consensus 106 ------------~e~VvfWkWis-~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI 171 (365)
T 2xzh_A 106 ------------TDDVTFWKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI 171 (365)
T ss_dssp ------------SSCEEEEEECS-SSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEE
T ss_pred ------------CCccEEEEecC-CCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeE
Confidence 23444445543 34566555 46699999974 34555555543 345556667776 444443
Q ss_pred ------CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC--C-CEEEEEcC---CCcEEEeecCcc---cccc
Q 047728 281 ------ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD--A-AIVYCGSS---DGLVNFWERELN---LSHG 345 (474)
Q Consensus 281 ------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~-~~l~~~~~---dg~i~v~d~~~~---~~~~ 345 (474)
-.|.+.+|..+.. ..+.+.+|......+.+..+ . .+++.+.. .+.+++.++... ....
T Consensus 172 ~~~~~~v~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f 244 (365)
T 2xzh_A 172 SAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 244 (365)
T ss_dssp EEETTEEEEEEEEEETTTT-------EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCC
T ss_pred eccCCccceeEEEEeeccc-------ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCc
Confidence 2367888887643 24555566544433333221 1 12332222 257888887543 1110
Q ss_pred -----eeeeec----ceee-EEEEecCCEEEEEeCCCcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceE
Q 047728 346 -----GVLRGH----KLAI-LCLVTAGNLVFSGSADMSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRW 415 (474)
Q Consensus 346 -----~~~~~~----~~~v-~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 415 (474)
.+.... .-++ +.++..-..++.-+.-|.|++||++++.. +..-+-...+|...+-.....
T Consensus 245 ~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~--i~~nrIS~d~iF~ta~~~~~~-------- 314 (365)
T 2xzh_A 245 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC--IYMNRISGETIFVTAPHEATA-------- 314 (365)
T ss_dssp CCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEEEGGGT--------
T ss_pred ccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcE--EEEeccCCCceEEecccCCCC--------
Confidence 001111 1111 34455567899999999999999999984 444444456676666555444
Q ss_pred EEEEecCCCcEEEEEccCC
Q 047728 416 ILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 416 ~l~s~s~Dg~i~vw~~~~~ 434 (474)
=++.....|.|.--.+++.
T Consensus 315 Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 315 GIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEEETTCEEEEEEECTT
T ss_pred cEEEEcCCCEEEEEEECcc
Confidence 3555558888777777654
No 333
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.67 E-value=1.1 Score=39.77 Aligned_cols=221 Identities=13% Similarity=0.159 Sum_probs=119.4
Q ss_pred cEEEEEEcCCEEEEeeCCCcEEEEeCCc--cccccccCccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeeccc
Q 047728 112 HIYSLAAAGDLLYTGSDSKNIRVWKNQR--EFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTL 189 (474)
Q Consensus 112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~~--~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 189 (474)
.|..++......+.-. ||.|..|-.+. .+..-......|..|+......+.-. ||.|..|-.......-.
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~------ 96 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV------ 96 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC------
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC------
Confidence 3566666655443335 89999995321 11111112336777777755444445 99999997664332210
Q ss_pred CccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeeecCcceeEEE
Q 047728 190 PTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIAHDDAVNSIV 269 (474)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~v~ 269 (474)
|. .-...|..++...+ +.+.-. ||.|..|-....-.+.........|..++
T Consensus 97 P~--------------------------~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~ 147 (282)
T 3qhy_B 97 PA--------------------------EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALD 147 (282)
T ss_dssp CG--------------------------GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEE
T ss_pred Cc--------------------------ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEE
Confidence 00 01235777776544 333345 89999997654322221112234577777
Q ss_pred ecCCCeEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccceeee
Q 047728 270 AGFDGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGGVLR 349 (474)
Q Consensus 270 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 349 (474)
......++. . ||.|..|-........ ........|..++.......++ .||.|+.|-......+. ...
T Consensus 148 ~G~~~~~~l-~-~G~v~~wG~n~~gqlg------~p~~~~~~v~~i~~G~~hs~al---~~G~v~~wG~n~~gqlg-~p~ 215 (282)
T 3qhy_B 148 GGVYTALAV-K-NGGVIAWGDNYFGQTT------VPAEAQSGVDDVAGGIFHSLAL---KDGKVIAWGDNRYKQTT-VPT 215 (282)
T ss_dssp ECSSEEEEE-E-TTEEEEEECCTTSTTS------CCGGGGSSEEEEEECSSEEEEE---ETTEEEEEECCTTSTTC-CCG
T ss_pred cccCEEEEE-E-CCEEEEecCCCCCCCC------CceecCCCeEEEEecCCEEEEE---ECCeEEEEECCCCCCCC-CCc
Confidence 665543333 3 7999999765433211 0111134577777654433333 58999999755432221 111
Q ss_pred ecceeeEEEEecCCEEEEEeCCCcEEEEECCCC
Q 047728 350 GHKLAILCLVTAGNLVFSGSADMSICIWRRKEN 382 (474)
Q Consensus 350 ~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~ 382 (474)
.....+..++......++-. ||.|..|-....
T Consensus 216 ~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 216 EALSGVSAIASGEWYSLALK-NGKVIAWGSSRT 247 (282)
T ss_dssp GGGSSCCEEEECSSCEEEEE-TTEEEEESTTCC
T ss_pred ccCCCceEEEcCCCEEEEEE-CCEEEEecCCCC
Confidence 12234566666555444445 999999976543
No 334
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.49 E-value=1.5 Score=40.27 Aligned_cols=47 Identities=9% Similarity=0.075 Sum_probs=31.0
Q ss_pred cCCEEEEEeCCCcEEEEECCCCceEEEEee-cCCccceEEEEEeeCCc
Q 047728 361 AGNLVFSGSADMSICIWRRKENEHICLSML-TGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 361 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~ 407 (474)
++.++++.-..+.|...++..++......+ ......+..+++.||+.
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 466777766778888888775542222222 22335789999999998
No 335
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=95.48 E-value=1.6 Score=40.64 Aligned_cols=253 Identities=12% Similarity=0.079 Sum_probs=131.9
Q ss_pred CEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEec
Q 047728 150 LVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMS 229 (474)
Q Consensus 150 ~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~ 229 (474)
.|..|+......+.-..||.|..|-....-.+-.... .. .... ..... -....+..++++
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~----------------~~-~~~p-~~v~~--~~~~~~~~v~i~ 113 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGT----------------ES-VSTP-TLLES--IQHVFIKKVAVN 113 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSS----------------CC-EEEE-EECGG--GTTSCEEEEEEC
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCc----------------CC-ccCC-EEccc--ccCCceeEEEEC
Confidence 4566666677778888999999996543211100000 00 0000 00000 012234556666
Q ss_pred CCCCEEEEEECCCcEEEEEcCCcc-----------eeeeeee-cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCC--
Q 047728 230 EDQNLLYSASWDKTFKVWRTSDYK-----------CLESVIA-HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGK-- 295 (474)
Q Consensus 230 ~~~~~l~s~s~dg~i~iwd~~~~~-----------~~~~~~~-~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~-- 295 (474)
....+.+.-..||.|..|-....- ....+.. ....|..|+.... ..++-..+|.|..|-.....+
T Consensus 114 ~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqLG 192 (389)
T 3kci_A 114 SGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA-HSACVTAAGDLYTWGKGRYGRLG 192 (389)
T ss_dssp TTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS-EEEEEETTSCEEEEECCGGGTTC
T ss_pred cCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcC-eEEEEeCCCeEEEeCCCCCCCcC
Confidence 666677777889999999653211 0111111 1225666665433 555567899999996543211
Q ss_pred ----ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc-----------ceeeeecceeeEEEEe
Q 047728 296 ----GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH-----------GGVLRGHKLAILCLVT 360 (474)
Q Consensus 296 ----~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-----------~~~~~~~~~~v~~~~~ 360 (474)
.....+..........|..++........++-..||.|+.|-....-.+ ..+.......+..++.
T Consensus 193 ~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~ 272 (389)
T 3kci_A 193 HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC 272 (389)
T ss_dssp SSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE
T ss_pred CCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC
Confidence 0111111111122345777776554456666778999999964332111 0000111224666777
Q ss_pred cCCEEEEEeCCCcEEEEECCCC---------ceEEEEeecC-CccceEEEEEeeCCccccccceEEEEEecCCCcEEEEE
Q 047728 361 AGNLVFSGSADMSICIWRRKEN---------EHICLSMLTG-HSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWR 430 (474)
Q Consensus 361 ~~~~l~sgs~dg~i~iwd~~~~---------~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~ 430 (474)
.....++-..||.|+.|-.... .......+.. ....|..|+.... ..+....||.|..|-
T Consensus 273 G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~----------h~~al~~~G~v~~wG 342 (389)
T 3kci_A 273 GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSL----------HCVCCTEDGEVYTWG 342 (389)
T ss_dssp ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS----------EEEEEETTCCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccC----------eEEEECCCCCEEEee
Confidence 6777777788999999976321 0000111111 1234666655433 334446899999997
Q ss_pred ccC
Q 047728 431 VSE 433 (474)
Q Consensus 431 ~~~ 433 (474)
...
T Consensus 343 ~n~ 345 (389)
T 3kci_A 343 DND 345 (389)
T ss_dssp CCT
T ss_pred CCC
Confidence 654
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.47 E-value=1.5 Score=40.16 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=37.2
Q ss_pred EEEecCCEEEEEeCC----------------------CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccce
Q 047728 357 CLVTAGNLVFSGSAD----------------------MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKR 414 (474)
Q Consensus 357 ~~~~~~~~l~sgs~d----------------------g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~ 414 (474)
+...++.+++.|+.+ ..+.+||+.+.+...+..+......-.+ ..-+++
T Consensus 248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~------- 318 (357)
T 2uvk_A 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNS------- 318 (357)
T ss_dssp EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTE-------
T ss_pred EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCE-------
Confidence 455577777777732 2578999988876655544433222222 234555
Q ss_pred EEEEEecCCC------cEEEEEccCCC
Q 047728 415 WILYSGSLDK------SVKMWRVSEQA 435 (474)
Q Consensus 415 ~~l~s~s~Dg------~i~vw~~~~~~ 435 (474)
+++.|+.++ .|.++++++++
T Consensus 319 -i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 319 -LLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp -EEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred -EEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 677777543 35555776653
No 337
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.45 E-value=1.5 Score=40.20 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=30.9
Q ss_pred ecCCEEEEEeCCCcEEEEECCCC-ceEEEEe-ecCCccceEEEEEeeCCc
Q 047728 360 TAGNLVFSGSADMSICIWRRKEN-EHICLSM-LTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 360 ~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~-~~~h~~~v~~l~~~~~~~ 407 (474)
+++.++++.-..+.|...++... +...... +.+-...+.++++.||+.
T Consensus 275 ~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~ 324 (354)
T 3a9g_A 275 LRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG 324 (354)
T ss_dssp GTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC
T ss_pred cCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc
Confidence 35667776667788888888753 2211122 223345789999999997
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.42 E-value=0.59 Score=42.74 Aligned_cols=147 Identities=16% Similarity=0.076 Sum_probs=82.5
Q ss_pred eeecCcceeEEEecCCCeEEEeeC-CCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCC---CCEEEEE---cCC
Q 047728 258 VIAHDDAVNSIVAGFDGLVFTGSA-DGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPD---AAIVYCG---SSD 330 (474)
Q Consensus 258 ~~~~~~~v~~v~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~---~~d 330 (474)
+...-...+.|+|.|++.++++.. .|.|++++.........................|+++|+ +..|++. ..+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 333345678999999996666666 899999875432211000001122334667899999995 4455543 234
Q ss_pred CcEEEeecCccc-------ccceee------eecceeeEEEEecCCEEEEEeC-------------CCcEEEEECCCC--
Q 047728 331 GLVNFWERELNL-------SHGGVL------RGHKLAILCLVTAGNLVFSGSA-------------DMSICIWRRKEN-- 382 (474)
Q Consensus 331 g~i~v~d~~~~~-------~~~~~~------~~~~~~v~~~~~~~~~l~sgs~-------------dg~i~iwd~~~~-- 382 (474)
+.|.-|...... ....++ ..|...-+.|.++|.+.++.+. -|.|.-.+....
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 556666554311 111111 2466666888899987777542 355555555432
Q ss_pred ------ceEEEEeecCCccceEEEEEeeCCc
Q 047728 383 ------EHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 383 ------~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
... + .-.+|.. ...++|+|++.
T Consensus 187 ~~nPf~~~~-i-~a~G~RN-p~Gla~dp~G~ 214 (347)
T 3das_A 187 PGNPFPGSP-V-YSYGHRN-VQGLAWDDKQR 214 (347)
T ss_dssp TTCSSTTCC-E-EEBCCSB-CCEEEECTTCC
T ss_pred CCCCCCCCe-E-EeeCCCC-cceEEECCCCC
Confidence 111 1 2235543 56899999876
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.24 E-value=1.6 Score=39.18 Aligned_cols=150 Identities=13% Similarity=0.099 Sum_probs=73.5
Q ss_pred CCCEEEEEECC-------CcEEEEEcCCcceeeeeeecC-cceeEEEecCCC-eEEEeeC------CCcEEEEEcccCCC
Q 047728 231 DQNLLYSASWD-------KTFKVWRTSDYKCLESVIAHD-DAVNSIVAGFDG-LVFTGSA------DGTVKVWRRELQGK 295 (474)
Q Consensus 231 ~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~-~~v~~v~~~~~~-~l~~~~~------dg~i~iwd~~~~~~ 295 (474)
++.+++.|+.+ ..+.+||..+.+-...-.... ..-.+++. .++ +++.|+. -..+.+||+....
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~- 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD- 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE-
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE-
Confidence 55666777654 347888887754332211111 01112222 344 5566654 2358888876432
Q ss_pred ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCC-----CcEEEeecCcccccc-eeeeecceeeEEEEecCCEEEEEe
Q 047728 296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSD-----GLVNFWERELNLSHG-GVLRGHKLAILCLVTAGNLVFSGS 369 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~l~sgs 369 (474)
...............++.+ ++++++.|+.+ ..+.+||+.+..-.. ...........++..++.+++.|+
T Consensus 187 ---W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 261 (318)
T 2woz_A 187 ---WKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGG 261 (318)
T ss_dssp ---EEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred ---EEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEEECC
Confidence 1111111111111222222 56777777653 346788887653211 111111122233445677777776
Q ss_pred CC--------------CcEEEEECCCCceEEE
Q 047728 370 AD--------------MSICIWRRKENEHICL 387 (474)
Q Consensus 370 ~d--------------g~i~iwd~~~~~~~~~ 387 (474)
.+ ..+.+||..+.+...+
T Consensus 262 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 262 FAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp BCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred eeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 54 4578889888775533
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.09 E-value=2.2 Score=40.71 Aligned_cols=110 Identities=10% Similarity=0.087 Sum_probs=60.9
Q ss_pred cCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceee--eeee------cCcceeEEEecCC----CeEEEeeC------
Q 047728 220 FDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE--SVIA------HDDAVNSIVAGFD----GLVFTGSA------ 281 (474)
Q Consensus 220 ~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~------~~~~v~~v~~~~~----~~l~~~~~------ 281 (474)
-...+.|+|.|+++++++-...+.|++++..+++... .+.. .......|+++|+ +.|++...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3466799999999866654433478888765554322 2211 2345668999994 54444332
Q ss_pred -------CCcEEEEEcccCCCc--eeeeeeeeee-cccccEEEEEEcCCCCEEEEEcC
Q 047728 282 -------DGTVKVWRRELQGKG--TKHFFSQTLL-KQECAVTALAISPDAAIVYCGSS 329 (474)
Q Consensus 282 -------dg~i~iwd~~~~~~~--~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~ 329 (474)
...|.-|++...... ....+...+. ........|+|.|+|.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 124555554322111 1111111111 22345789999999987776543
No 341
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.044 Score=50.02 Aligned_cols=145 Identities=13% Similarity=0.090 Sum_probs=80.3
Q ss_pred CCEEEEEECCCcEEEEEcCCcceeeeeeecC-cceeEEE---ecCCCeEEEe--eCCCcEEEEEcccCCCceeeeeeeee
Q 047728 232 QNLLYSASWDKTFKVWRTSDYKCLESVIAHD-DAVNSIV---AGFDGLVFTG--SADGTVKVWRRELQGKGTKHFFSQTL 305 (474)
Q Consensus 232 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~v~~v~---~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~ 305 (474)
+.+++.++.||.|.-+|..+|+....+.... .++.... ...++.++.+ +.||.|..++...+.. ........
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~--~~~~~~~~ 87 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ--KLPLSIRQ 87 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE--EEEEEHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE--Eeeecccc
Confidence 3478899999999999999999998886541 2222111 0013333333 6899999998765421 11111000
Q ss_pred ecccccEEE---EEE-c----CCCCEEEEEcCCCcEEEeecCcccccceeeeeccee------eEEEE-------ecCCE
Q 047728 306 LKQECAVTA---LAI-S----PDAAIVYCGSSDGLVNFWERELNLSHGGVLRGHKLA------ILCLV-------TAGNL 364 (474)
Q Consensus 306 ~~~~~~v~~---l~~-~----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~------v~~~~-------~~~~~ 364 (474)
.....++.. ..+ . ..+..+++|+.+|.+...|+++++.+.....+.... ..|.. ..+..
T Consensus 88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 111122221 000 0 145678889999999999999987665443322111 11111 12456
Q ss_pred EEEEeCCCcEEEEE
Q 047728 365 VFSGSADMSICIWR 378 (474)
Q Consensus 365 l~sgs~dg~i~iwd 378 (474)
|+.|..+..+.+.+
T Consensus 168 v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 168 IVIGKTIFELGIHS 181 (339)
T ss_dssp EEEEEEEEECEECC
T ss_pred EEEecceEEEEEEC
Confidence 77777777666666
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.91 E-value=2.7 Score=42.61 Aligned_cols=150 Identities=10% Similarity=0.048 Sum_probs=79.2
Q ss_pred CCCEEEEEECC------CcEEEEEcCCcceeee--eeecCcceeEEEecCCC-eEEEeeCCC--cEEEEEcccCCCceee
Q 047728 231 DQNLLYSASWD------KTFKVWRTSDYKCLES--VIAHDDAVNSIVAGFDG-LVFTGSADG--TVKVWRRELQGKGTKH 299 (474)
Q Consensus 231 ~~~~l~s~s~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~v~~~~~~-~l~~~~~dg--~i~iwd~~~~~~~~~~ 299 (474)
++.+++.|+.+ ..+.+||..+.+-... +...... .+++...++ +++.|+.++ .+.+||..... .
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~----W 525 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI----F 525 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE----E
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc----e
Confidence 66677777643 3578899887543221 2111111 223332245 777777655 68888876432 1
Q ss_pred eeeee---eecccccEEEEEEcCC-CCEEEEEcC--C-----CcEEEeecCcccc-----cceeee---ecceeeEEEEe
Q 047728 300 FFSQT---LLKQECAVTALAISPD-AAIVYCGSS--D-----GLVNFWERELNLS-----HGGVLR---GHKLAILCLVT 360 (474)
Q Consensus 300 ~~~~~---~~~~~~~v~~l~~~~~-~~~l~~~~~--d-----g~i~v~d~~~~~~-----~~~~~~---~~~~~v~~~~~ 360 (474)
..... .........++.+..+ +.+++.|+. + ..+.+||+.+... ...... .......+...
T Consensus 526 ~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~ 605 (695)
T 2zwa_A 526 KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI 605 (695)
T ss_dssp EECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE
T ss_pred EEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe
Confidence 11111 1111222233555555 667777765 2 3588899877651 111111 11112233344
Q ss_pred c-CCEEEEEeC--------CCcEEEEECCCCceE
Q 047728 361 A-GNLVFSGSA--------DMSICIWRRKENEHI 385 (474)
Q Consensus 361 ~-~~~l~sgs~--------dg~i~iwd~~~~~~~ 385 (474)
+ +.+++.|+. ...|.+||..+.+..
T Consensus 606 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 606 TPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp ETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred CCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 5 777788874 356999999988754
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.63 E-value=0.45 Score=40.06 Aligned_cols=106 Identities=7% Similarity=-0.068 Sum_probs=59.7
Q ss_pred eeEEEecCCCCEEEEEECCCcEEEEEcCCcceee------ee-eecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCC
Q 047728 223 ISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLE------SV-IAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGK 295 (474)
Q Consensus 223 V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------~~-~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~ 295 (474)
-.++.|.+++.+.++ .||.|.-++-.+..... .+ ..-=..+..|.+.|+|.|.+.. |+.+.-+.......
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~ 166 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQ 166 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTT
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCC
Confidence 468899999977776 56988877653321111 11 1111467899999999777777 88854322211110
Q ss_pred ceeee-eeeeee-cccccEEEEEEcCCCCEEEEEcCCCcEE
Q 047728 296 GTKHF-FSQTLL-KQECAVTALAISPDAAIVYCGSSDGLVN 334 (474)
Q Consensus 296 ~~~~~-~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 334 (474)
.... ....+. ..-...+.+.|.+++.+.++. ++.+.
T Consensus 167 -~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 167 -DNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp -CCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred -cccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 0000 011111 223345557799999888776 66443
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.57 E-value=2.9 Score=42.39 Aligned_cols=192 Identities=9% Similarity=0.036 Sum_probs=95.9
Q ss_pred CCCCEEEEEECC----CcEEEEEcCCcceeeee-e------ecCcceeEEEecC-CC-eEEEeeCCC------cEEEEEc
Q 047728 230 EDQNLLYSASWD----KTFKVWRTSDYKCLESV-I------AHDDAVNSIVAGF-DG-LVFTGSADG------TVKVWRR 290 (474)
Q Consensus 230 ~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~-~------~~~~~v~~v~~~~-~~-~l~~~~~dg------~i~iwd~ 290 (474)
-++.+++.|+.+ ..+.+||..+.+-...- . .....-.+++... ++ .++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 356677777743 46888998876543222 1 1111122333332 55 667776543 4677877
Q ss_pred ccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCC--cEEEeecCcccccceee----eecce--eeEEEEec-
Q 047728 291 ELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDG--LVNFWERELNLSHGGVL----RGHKL--AILCLVTA- 361 (474)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~----~~~~~--~v~~~~~~- 361 (474)
.... ............ -.+++...++.+++.|+.++ .+.+||..+..-..... ..... ....+..+
T Consensus 476 ~t~~----W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 476 KTRE----WSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp TTTE----EEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred CCCc----EEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 6421 111111111111 12233324788888887655 68999987653221110 00111 11222333
Q ss_pred CCEEEEEeC--C-----CcEEEEECCCCc------eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecC------
Q 047728 362 GNLVFSGSA--D-----MSICIWRRKENE------HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSL------ 422 (474)
Q Consensus 362 ~~~l~sgs~--d-----g~i~iwd~~~~~------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~------ 422 (474)
+.+++.|+. + ..+.+||+.+.. ...+.........-.+++...++. +++.||.
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~--------iyv~GG~~~~~~~ 622 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK--------LLIVGGTSPSGLF 622 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE--------EEEECCBCSSCCC
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE--------EEEECCccCCCCC
Confidence 567777765 2 458899998876 333332110111111233333355 6777764
Q ss_pred --CCcEEEEEccCC
Q 047728 423 --DKSVKMWRVSEQ 434 (474)
Q Consensus 423 --Dg~i~vw~~~~~ 434 (474)
...|.+||+.+.
T Consensus 623 ~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 623 DRTNSIISLDPLSE 636 (695)
T ss_dssp CTTTSEEEEETTTT
T ss_pred CCCCeEEEEECCCC
Confidence 345888998765
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.45 E-value=3 Score=39.83 Aligned_cols=107 Identities=10% Similarity=0.167 Sum_probs=59.9
Q ss_pred cceeEEEecCCCeEEEeeCCC-cEEEEEcccCCCceeeeeeeeee--cccccEEEEEEcCC---CCEEEEEcC-------
Q 047728 263 DAVNSIVAGFDGLVFTGSADG-TVKVWRRELQGKGTKHFFSQTLL--KQECAVTALAISPD---AAIVYCGSS------- 329 (474)
Q Consensus 263 ~~v~~v~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~---~~~l~~~~~------- 329 (474)
...+.|+|.|+|.|+++...+ .|++++...+.......+..... .....+..|+|+|+ +..|++...
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 456799999999666666765 68888754222110000000110 13567889999995 555655542
Q ss_pred ------CCcEEEeecCccc----ccceee------eecceeeEEEEecCCEEEEEe
Q 047728 330 ------DGLVNFWERELNL----SHGGVL------RGHKLAILCLVTAGNLVFSGS 369 (474)
Q Consensus 330 ------dg~i~v~d~~~~~----~~~~~~------~~~~~~v~~~~~~~~~l~sgs 369 (474)
...|.-|+..... ....++ ..|...-+.+.++|.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 1345555543210 011111 136667788889998777654
No 346
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.70 E-value=4.3 Score=44.15 Aligned_cols=196 Identities=10% Similarity=0.083 Sum_probs=111.0
Q ss_pred EcCCEEEEeeCCCcEEEEeCC--ccccccccCccCEEEEEec-CCEEEEEeCCCeEEEEecCCCCcc-eeeeecccCccc
Q 047728 118 AAGDLLYTGSDSKNIRVWKNQ--REFSGFKSNSGLVKAIVIS-NEKIFSGHQDGKIRVWKVSSKDAS-IHKRVGTLPTFK 193 (474)
Q Consensus 118 ~~~~~l~tgs~dg~v~vwd~~--~~~~~~~~h~~~V~~i~~~-~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~ 193 (474)
|..+.||.=. ..++.|+++. ..+..+.-. ..|.-..|- .+.|+-.+. ..|.-|+++..... ..+...
T Consensus 75 P~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~------ 145 (1630)
T 1xi4_A 75 PASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRH------ 145 (1630)
T ss_pred CCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCCeeEEEcC-CeEEEeccCCCCccHHHHhcc------
Confidence 4445555443 6789999864 445555443 356667776 555555544 46999999753211 101000
Q ss_pred eeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEE-------CCCcEEEEEcCCcceeeeeeecCccee
Q 047728 194 DFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSAS-------WDKTFKVWRTSDYKCLESVIAHDDAVN 266 (474)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~~v~ 266 (474)
..+ ....|..-..+++.++++..+ -.|.+.+|.++.+ ..+.+.+|.....
T Consensus 146 --------------------~~L--~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~ 202 (1630)
T 1xi4_A 146 --------------------SSL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 202 (1630)
T ss_pred --------------------hhc--ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhh
Confidence 000 134566666677777766443 3478889987653 3455566665544
Q ss_pred EEEecCCC---eEEEeeC----CCcEEEEEcccCCCceeeee---e---eeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728 267 SIVAGFDG---LVFTGSA----DGTVKVWRRELQGKGTKHFF---S---QTLLKQECAVTALAISPDAAIVYCGSSDGLV 333 (474)
Q Consensus 267 ~v~~~~~~---~l~~~~~----dg~i~iwd~~~~~~~~~~~~---~---~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 333 (474)
.+...... .+++-.. .+.++|-++.....+...+. . ........-..++..++....++..+.-|.|
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~ 282 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI 282 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceE
Confidence 44332111 2332222 27899998854311111110 0 0111223445678888888889999999999
Q ss_pred EEeecCcccccc
Q 047728 334 NFWERELNLSHG 345 (474)
Q Consensus 334 ~v~d~~~~~~~~ 345 (474)
.+||+.++..+.
T Consensus 283 ~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 283 HLYDLETGTCIY 294 (1630)
T ss_pred EEEecccchhhh
Confidence 999999986653
No 347
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.47 E-value=6.4 Score=42.88 Aligned_cols=217 Identities=11% Similarity=0.103 Sum_probs=114.4
Q ss_pred CCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEE
Q 047728 166 QDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFK 245 (474)
Q Consensus 166 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~ 245 (474)
...++.|+|+++......... ...|.-=.|-.+ +.|+..+ +..|.
T Consensus 84 ag~~lQiFnl~~k~klks~~~---------------------------------~e~VvfWkWis~-~~l~lVT-~~aVy 128 (1630)
T 1xi4_A 84 AGKTLQIFNIEMKSKMKAHTM---------------------------------TDDVTFWKWISL-NTVALVT-DNAVY 128 (1630)
T ss_pred cCCeEEEeehHHhhhhccccc---------------------------------CCCceEEEecCC-CeeEEEc-CCeEE
Confidence 467899999998765533321 123333344433 3455554 46699
Q ss_pred EEEcCC-cceeeeeeec----CcceeEEEecCCC--eEEEee------CCCcEEEEEcccCCCceeeeeeeeeecccccE
Q 047728 246 VWRTSD-YKCLESVIAH----DDAVNSIVAGFDG--LVFTGS------ADGTVKVWRRELQGKGTKHFFSQTLLKQECAV 312 (474)
Q Consensus 246 iwd~~~-~~~~~~~~~~----~~~v~~v~~~~~~--~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 312 (474)
-|++.. ..+...+..| ...|..-..+++. .+++|- -.|.+.+|..+... .+.+.+|....
T Consensus 129 HW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-------sQ~iegha~~F 201 (1630)
T 1xi4_A 129 HWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-------SQPIEGHAASF 201 (1630)
T ss_pred EeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-------chhhhHhHhhh
Confidence 999964 2344444433 3456666667776 444443 35788899876432 34444554433
Q ss_pred EEEEEcC--C-CCEEEEEcC---CCcEEEeecCcc---cc-c----ceeeeec----cee-eEEEEecCCEEEEEeCCCc
Q 047728 313 TALAISP--D-AAIVYCGSS---DGLVNFWERELN---LS-H----GGVLRGH----KLA-ILCLVTAGNLVFSGSADMS 373 (474)
Q Consensus 313 ~~l~~~~--~-~~~l~~~~~---dg~i~v~d~~~~---~~-~----~~~~~~~----~~~-v~~~~~~~~~l~sgs~dg~ 373 (474)
..+.+.. . ...++.+.. .+.++|.++... .. . ..+.... .-+ .+.++..-..++.-+.-|.
T Consensus 202 ~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~ 281 (1630)
T 1xi4_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY 281 (1630)
T ss_pred heeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce
Confidence 3333321 1 112222211 267888887543 10 0 0011111 111 2444555678888999999
Q ss_pred EEEEECCCCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 374 ICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 374 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
|.+||+.++..+ ..-.-...+|...+-..... =++.....|.|.--.+.+.
T Consensus 282 ~~~~d~~t~~~i--~~~ris~~~iF~~~~~~~~~--------g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 282 IHLYDLETGTCI--YMNRISGETIFVTAPHEATA--------GIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred EEEEecccchhh--hhccccCCceEEeccCCCCC--------ceEEEcCCceEEEEEEccc
Confidence 999999998743 33222334454444433322 2344446666655555544
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.07 E-value=4.2 Score=39.43 Aligned_cols=128 Identities=12% Similarity=-0.038 Sum_probs=76.9
Q ss_pred CcceeEEEecCCC--eEEEeeCCCcEEEEEcccCCC-----c-eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcE
Q 047728 262 DDAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGK-----G-TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLV 333 (474)
Q Consensus 262 ~~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~-----~-~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i 333 (474)
......+.++||| .++.|--+.++.++|++.... . ...........-.-.....+|+++|....+-.-|..|
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceE
Confidence 3445678899999 556666789999999874211 0 0000111122234567889999999766677789999
Q ss_pred EEeecCccc---------ccceeeeecceee-EEE------EecCCEEEEEe---CCCcE----------EEEECCCCce
Q 047728 334 NFWERELNL---------SHGGVLRGHKLAI-LCL------VTAGNLVFSGS---ADMSI----------CIWRRKENEH 384 (474)
Q Consensus 334 ~v~d~~~~~---------~~~~~~~~~~~~v-~~~------~~~~~~l~sgs---~dg~i----------~iwd~~~~~~ 384 (474)
..|++.... .+...+.-|-..- ... .++|++|++.. .|..+ .+.|+...+.
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM 481 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDEM 481 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSSC
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCce
Confidence 999986531 1222222222221 211 35789999876 34443 6788876654
Q ss_pred EEEEe
Q 047728 385 ICLSM 389 (474)
Q Consensus 385 ~~~~~ 389 (474)
.++..
T Consensus 482 ~lv~D 486 (638)
T 3sbq_A 482 KLVHD 486 (638)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 44433
No 349
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=91.00 E-value=10 Score=35.43 Aligned_cols=288 Identities=9% Similarity=0.042 Sum_probs=147.2
Q ss_pred CcEEEEEEcCCEEEEeeCCCcEEEEeCCc--------------cccccccCccCEEEEEecCCEEEEEeCCC-eEEEEec
Q 047728 111 GHIYSLAAAGDLLYTGSDSKNIRVWKNQR--------------EFSGFKSNSGLVKAIVISNEKIFSGHQDG-KIRVWKV 175 (474)
Q Consensus 111 ~~i~~~~~~~~~l~tgs~dg~v~vwd~~~--------------~~~~~~~h~~~V~~i~~~~~~l~s~~~dg-~i~vwd~ 175 (474)
..|..++.-+...+.-..||.|..|=.+. +..........|..|+.-....+.-..|+ .|..|-.
T Consensus 16 ~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~ 95 (406)
T 4d9s_A 16 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGW 95 (406)
T ss_dssp CCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEEC
T ss_pred cceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcC
Confidence 35788888877777778899999993211 00000112336777877766666666664 8999965
Q ss_pred CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce-
Q 047728 176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC- 254 (474)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~- 254 (474)
...-..-.... .. .....+...+ ....|..|+.. ..+.+.-..||.|+.|-....-.
T Consensus 96 n~~GqLG~g~~----------------~~--~~~p~~v~~l--~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqL 153 (406)
T 4d9s_A 96 GDFGRLGHGNS----------------SD--LFTPLPIKAL--HGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQL 153 (406)
T ss_dssp CGGGTTCSSSC----------------CC--EEEEEECGGG--TTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTT
T ss_pred CCCcCCCCCCC----------------Cc--cccceEeccc--CCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccC
Confidence 43211100000 00 0000000000 22356666654 34566667899999997543111
Q ss_pred ----------eeeeee-cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCC------ceeeeeeeeeecccccEEEEEE
Q 047728 255 ----------LESVIA-HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGK------GTKHFFSQTLLKQECAVTALAI 317 (474)
Q Consensus 255 ----------~~~~~~-~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~v~~l~~ 317 (474)
...+.. ....|..++.... ..++-..+|.|..|-.....+ .....+..........|..++.
T Consensus 154 G~g~~~~~~~p~~v~~~~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~ 232 (406)
T 4d9s_A 154 GLGDTEDSLVPQKIQAFEGIRIKMVAAGAE-HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC 232 (406)
T ss_dssp CSSSCCCEEEEEECGGGTTCCEEEEEECSS-EEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE
T ss_pred CCCCCCCcccceEecccCCCcEEEEecCCC-eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE
Confidence 011111 1225666665433 555557899999996543221 1111111111112245666655
Q ss_pred cCCCCEEEEEcCCCcEEEeecCcccccc-----------eeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCCC-c--
Q 047728 318 SPDAAIVYCGSSDGLVNFWERELNLSHG-----------GVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKEN-E-- 383 (474)
Q Consensus 318 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~-~-- 383 (474)
. ....++-..+|.|+.|-....-.+. .+.......+..++......++-..||.|+.|-.... +
T Consensus 233 G--~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG 310 (406)
T 4d9s_A 233 G--WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVG 310 (406)
T ss_dssp C--SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTC
T ss_pred C--CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCC
Confidence 4 3344455678899998643221110 0000112336667766777777788999999965421 1
Q ss_pred -------eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 384 -------HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 384 -------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
..+..........|..|+.-.. ..+.-..||.|..|=...
T Consensus 311 ~g~~~~~~~p~~v~~~~~~~v~~va~G~~----------hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 311 VGNNLDQCSPVQVRFPDDQKVVQVSCGWR----------HTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp SSSSSCEEEEEEECCGGGCCEEEEEECSS----------EEEEEETTSCEEEEECCT
T ss_pred CCCCCCCccCEEEeccCCCcEEEEEeCCC----------eEEEEeCCCCEEEecCCC
Confidence 1111111112234666655433 334445789999997654
No 350
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=90.92 E-value=9.9 Score=35.22 Aligned_cols=246 Identities=12% Similarity=0.101 Sum_probs=126.2
Q ss_pred cEEEEEEcCCEEEEeeCCCcEEEEeCCcc----------c---cccc-cCccCEEEEEec--CCEEEEEeCCCeEEEEec
Q 047728 112 HIYSLAAAGDLLYTGSDSKNIRVWKNQRE----------F---SGFK-SNSGLVKAIVIS--NEKIFSGHQDGKIRVWKV 175 (474)
Q Consensus 112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~~~----------~---~~~~-~h~~~V~~i~~~--~~~l~s~~~dg~i~vwd~ 175 (474)
.|..++......+.-..||.|..|-.+.. . ..+. .....+..+.+. ....+.-..||.|..|-.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~ 133 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGE 133 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEEC
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeC
Confidence 46667767777777778999999942210 0 0011 112234445554 567777789999999965
Q ss_pred CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCc-c-
Q 047728 176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDY-K- 253 (474)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~-~- 253 (474)
......-.... ... ........+ ....|..|+.. ..+.+.-..||.|..|-.... +
T Consensus 134 n~~GqLG~g~~----------------~~~--~~p~~v~~l--~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqL 191 (389)
T 3kci_A 134 AEDGKLGHGNR----------------SPC--DRPRVIESL--RGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRL 191 (389)
T ss_dssp CGGGTTCSSSC----------------CCE--EEEEECGGG--TTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTT
T ss_pred CCCCcCCCCCC----------------ccC--cCCeEeccc--CCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCc
Confidence 43211100000 000 000000000 12246666553 345566678899999965321 1
Q ss_pred ---------eeeeeee-cCcceeEEEecCC-CeEEEeeCCCcEEEEEcccCCCc------eeeeeeeeeecccccEEEEE
Q 047728 254 ---------CLESVIA-HDDAVNSIVAGFD-GLVFTGSADGTVKVWRRELQGKG------TKHFFSQTLLKQECAVTALA 316 (474)
Q Consensus 254 ---------~~~~~~~-~~~~v~~v~~~~~-~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~v~~l~ 316 (474)
....+.. ....|..++.... ...++-..||.|..|-.....+. ....+..........|..++
T Consensus 192 G~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~ 271 (389)
T 3kci_A 192 GHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVE 271 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred CCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEe
Confidence 0011111 1235666666542 35666678999999965432110 11111111111222466665
Q ss_pred EcCCCCEEEEEcCCCcEEEeecCccccc-----------ceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECCC
Q 047728 317 ISPDAAIVYCGSSDGLVNFWERELNLSH-----------GGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRKE 381 (474)
Q Consensus 317 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~ 381 (474)
... ...++-..+|.|+.|-......+ ..+.......+..++......++-..||.|+.|-...
T Consensus 272 ~G~--~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 272 CGS--QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EET--TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCT
T ss_pred CCC--CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCC
Confidence 543 34444568899999965332111 0011111234677777777777788999999997653
No 351
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=90.41 E-value=9.2 Score=34.02 Aligned_cols=157 Identities=10% Similarity=0.132 Sum_probs=83.0
Q ss_pred EecCCCCEEEEEECC--------------CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEEEee--CCCcEEEEE
Q 047728 227 SMSEDQNLLYSASWD--------------KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVFTGS--ADGTVKVWR 289 (474)
Q Consensus 227 ~~~~~~~~l~s~s~d--------------g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~--~dg~i~iwd 289 (474)
-++++++.|+-+... ..|+..++...+.. .+.. ... ..+++++ .|+-.. .++.-.||.
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~--~~~--~~~s~~g~~Iy~~~~~~~~~~~Iy~ 133 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDP--DPC--IYASLIGNYIYYLHYDTQTATSLYR 133 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEEC--SCE--EEEEEETTEEEEEEESSSSCEEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eeec--CCc--cEEEEeCCEEEEEeecCCCCceEEE
Confidence 346777777766542 35777777665432 2221 222 2455565 555444 455556665
Q ss_pred cccCCCceeeeeeeeeecccccEEEEEEcCCCCEEEEEcC-CCcEEEeecCcccccceeeeecceeeEEEEecCCEEEEE
Q 047728 290 RELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSS-DGLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSG 368 (474)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg 368 (474)
+...+... ..+..+.. .+++++++.|+-.+. ...|.+.++...... .+..+ ... ..+.|++.+|+-.
T Consensus 134 ~~~dGs~~-----~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l~~~-~~~-~~~~P~g~~iy~t 201 (302)
T 3s25_A 134 IRIDGEEK-----KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA-LFYDC-NCY-KPVVLDDTNVYYM 201 (302)
T ss_dssp EETTSCCC-----EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE-EEECS-CEE-EEEEEETTEEEEE
T ss_pred EECCCCCe-----EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE-EEeCC-Ccc-ceeeecCCEEEEE
Confidence 55443321 11222211 356777887776655 567888887665432 22222 222 2356888888766
Q ss_pred eCC--CcEEEEECCCCceEEEEeecCCccceEEEEEeeCCc
Q 047728 369 SAD--MSICIWRRKENEHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 369 s~d--g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
..+ ..|..-++...... .+.. ..+ ..|+|++.
T Consensus 202 ~~~~~~~I~~~~ldG~~~~---~Lt~--~~~--~~~~~~g~ 235 (302)
T 3s25_A 202 DVNRDNAIVHVNINNPNPV---VLTE--ANI--EHYNVYGS 235 (302)
T ss_dssp EGGGTTEEEEECSSSCCCE---ECSC--SCE--EEEEEETT
T ss_pred EcCCCcEEEEEECCCCCeE---EEeC--CCc--ceEEECCC
Confidence 543 35666666665532 2322 223 33677776
No 352
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=89.78 E-value=13 Score=34.81 Aligned_cols=243 Identities=9% Similarity=-0.001 Sum_probs=129.4
Q ss_pred cEEEEEEcCCEEEEeeCCCcEEEEeCCc--------------cccccccCccCEEEEEecCCEEEEEeCCCeEEEEec--
Q 047728 112 HIYSLAAAGDLLYTGSDSKNIRVWKNQR--------------EFSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKV-- 175 (474)
Q Consensus 112 ~i~~~~~~~~~l~tgs~dg~v~vwd~~~--------------~~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~-- 175 (474)
.|..++..+...+.-..||.|..|-.+. ...........|..|+......+.-..||.|..|-.
T Consensus 76 ~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~ 155 (423)
T 3mvd_K 76 DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFR 155 (423)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEE
T ss_pred CceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCC
Confidence 4778888888888888899999994211 000111123467777777778888889999999985
Q ss_pred CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCccee
Q 047728 176 SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCL 255 (474)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 255 (474)
......-.. ..... ...+ . ......|..|+.. ..+.+.-..||.|+.|-....-.+
T Consensus 156 n~~GqlG~~-----~~~~~----------~~p~-----~--~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqL 211 (423)
T 3mvd_K 156 DSHGNMGLT-----IDGNK----------RTPI-----D--LMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQL 211 (423)
T ss_dssp CSSSEEESB-----TTBCE----------EEEE-----E--SSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTT
T ss_pred CCCCCcCcC-----CCCCC----------ceee-----E--ecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCcc
Confidence 221111000 00000 0000 0 0123356666654 345566678999999964321110
Q ss_pred -----------------------eeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc------eeeeeeeeee
Q 047728 256 -----------------------ESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG------TKHFFSQTLL 306 (474)
Q Consensus 256 -----------------------~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~ 306 (474)
.........|..++......++.-..+|.|..|-.....+. ..... ....
T Consensus 212 G~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~-~p~~ 290 (423)
T 3mvd_K 212 GRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFAL-TPIK 290 (423)
T ss_dssp SSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEE-EEEE
T ss_pred CCCcccccccccccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceee-eeEE
Confidence 00011123455565543334444468999999975432211 00111 1111
Q ss_pred cccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc-----------ceeeeecceeeEEEEecCCEEEEEeCCCcEE
Q 047728 307 KQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH-----------GGVLRGHKLAILCLVTAGNLVFSGSADMSIC 375 (474)
Q Consensus 307 ~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~ 375 (474)
.....|..++.. ....++-..+|.|+.|-....-.+ ......-...+..++......++-..||.|+
T Consensus 291 ~~~~~v~~ia~G--~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~ 368 (423)
T 3mvd_K 291 TELKDIRHIAGG--QHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLY 368 (423)
T ss_dssp ECCCSEEEEEEC--SSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEE
T ss_pred cCCCCeEEEEcc--cCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEE
Confidence 113456666554 334455567899999964322110 0011111125677777677777778999999
Q ss_pred EEECCC
Q 047728 376 IWRRKE 381 (474)
Q Consensus 376 iwd~~~ 381 (474)
.|=...
T Consensus 369 ~wG~n~ 374 (423)
T 3mvd_K 369 SWGSGV 374 (423)
T ss_dssp EEECCT
T ss_pred EECCCC
Confidence 997643
No 353
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=88.22 E-value=17 Score=33.94 Aligned_cols=244 Identities=11% Similarity=0.091 Sum_probs=127.2
Q ss_pred cEEEEEEcCCEEEEeeCC-CcEEEEeCCcc--------------ccccccCccCEEEEEecCCEEEEEeCCCeEEEEecC
Q 047728 112 HIYSLAAAGDLLYTGSDS-KNIRVWKNQRE--------------FSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKVS 176 (474)
Q Consensus 112 ~i~~~~~~~~~l~tgs~d-g~v~vwd~~~~--------------~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~~ 176 (474)
.|..++......+.-..+ +.|+.|-.+.. ..........|..|+.-....+.-..||.|..|-..
T Consensus 69 ~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n 148 (406)
T 4d9s_A 69 QIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN 148 (406)
T ss_dssp CEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred CEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCC
Confidence 578888876665555555 48999942210 001111233688888777788888899999999765
Q ss_pred CCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce--
Q 047728 177 SKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC-- 254 (474)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~-- 254 (474)
....+-.... .. .........+ ....|..++.. ..+.+.-..||.|+.|-....-.
T Consensus 149 ~~GqLG~g~~----------------~~--~~~p~~v~~~--~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG 206 (406)
T 4d9s_A 149 QNGQLGLGDT----------------ED--SLVPQKIQAF--EGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLG 206 (406)
T ss_dssp TTSTTCSSSC----------------CC--EEEEEECGGG--TTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTC
T ss_pred CCccCCCCCC----------------CC--cccceEeccc--CCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCC
Confidence 4322110000 00 0000000000 12246666554 34556667889999996432110
Q ss_pred ---------eeeeee-cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc------eeeeeeeeeecccccEEEEEEc
Q 047728 255 ---------LESVIA-HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG------TKHFFSQTLLKQECAVTALAIS 318 (474)
Q Consensus 255 ---------~~~~~~-~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~~v~~l~~~ 318 (474)
...+.. ....|..++.... ..++-..+|.|..|-.....+. ....+..........|..++..
T Consensus 207 ~g~~~~~~~p~~v~~~~~~~i~~va~G~~-ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G 285 (406)
T 4d9s_A 207 LGDRTDRLVPERVTSTGGEKMSMVACGWR-HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG 285 (406)
T ss_dssp SSSSCCEEEEEECCCSTTCCEEEEEECSS-EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCCCCCcCccEEecccCCceEEEEEECCC-cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec
Confidence 011111 1235666665433 4455578999999975432211 1111111111122346665554
Q ss_pred CCCCEEEEEcCCCcEEEeecCccccc-----------ceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECC
Q 047728 319 PDAAIVYCGSSDGLVNFWERELNLSH-----------GGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 319 ~~~~~l~~~~~dg~i~v~d~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~ 380 (474)
....++-..||.|+.|-....-.+ ..+.......+..++.-....++-..||.|+.|=..
T Consensus 286 --~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 286 --WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp --SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred --CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCC
Confidence 334445568899999964332111 111111223566777767777777889999999764
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.66 E-value=15 Score=38.71 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=34.0
Q ss_pred CCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee
Q 047728 221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI 259 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 259 (474)
..+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 457778888888999999999999999999999888754
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.33 E-value=23 Score=33.66 Aligned_cols=111 Identities=12% Similarity=0.098 Sum_probs=61.0
Q ss_pred cCCeeEEEecCCCC-EEEEEECCCcEEEEEcCCcc---eeeeee---e------cCcceeEEEecCC----CeEEEe-eC
Q 047728 220 FDAISSLSMSEDQN-LLYSASWDKTFKVWRTSDYK---CLESVI---A------HDDAVNSIVAGFD----GLVFTG-SA 281 (474)
Q Consensus 220 ~~~V~~l~~~~~~~-~l~s~s~dg~i~iwd~~~~~---~~~~~~---~------~~~~v~~v~~~~~----~~l~~~-~~ 281 (474)
-..-+.|+|.|++. .|+++...|.|++++..... .+..+. . .......|+++|+ +.|++. +.
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 34567999999986 56667789999999753221 111111 1 1346778999997 433322 21
Q ss_pred --C----------CcEEEEEcccCC--C---ceeeeeeeee-ecccccEEEEEEcCCCCEEEEEcCC
Q 047728 282 --D----------GTVKVWRRELQG--K---GTKHFFSQTL-LKQECAVTALAISPDAAIVYCGSSD 330 (474)
Q Consensus 282 --d----------g~i~iwd~~~~~--~---~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~d 330 (474)
+ ..|.-|.+.... . .....+.... .........|+|.||+.+.++.+..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 133345543211 0 1111111111 2223457899999999877766543
No 356
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=84.22 E-value=3.5 Score=39.96 Aligned_cols=128 Identities=8% Similarity=-0.002 Sum_probs=74.8
Q ss_pred cEEEeecCc----ccccceee-eecceeeEEEEecCCEEEEEe-CCCcEEEEECCCCc-----------eEEEEeecCCc
Q 047728 332 LVNFWEREL----NLSHGGVL-RGHKLAILCLVTAGNLVFSGS-ADMSICIWRRKENE-----------HICLSMLTGHS 394 (474)
Q Consensus 332 ~i~v~d~~~----~~~~~~~~-~~~~~~v~~~~~~~~~l~sgs-~dg~i~iwd~~~~~-----------~~~~~~~~~h~ 394 (474)
.|.+.|.+. .......+ .+....-+.++|||+++++++ .+.++.++|++... ......... .
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-G 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-G 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-C
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-C
Confidence 366777665 22222222 222333477889999988776 57899999987321 111223332 2
Q ss_pred cceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC------CC--CCCCCcccccccCCCCCCCccccCCCCCcC
Q 047728 395 GPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ------AP--PLVSTTQQHPLEGHGVAPNSLPYAPSFSSQ 466 (474)
Q Consensus 395 ~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~------~~--~~~~~~~~~~~~~~~~~v~~l~~~p~~s~D 466 (474)
-.....+|.+++. ...|.-.|..|.-|++... +. +.......+...+|..... .-+-.+|
T Consensus 378 lGPlHt~Fd~~G~--------aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~----get~~~d 445 (638)
T 3sbq_A 378 LGPLHTTFDGRGN--------AYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASL----CETNEAD 445 (638)
T ss_dssp SCEEEEEECSSSE--------EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETT----TTSTTCC
T ss_pred CcccEEEECCCCc--------eEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCC----CccCCCC
Confidence 3457788999986 6777789999999999753 11 1111122233334432222 2266889
Q ss_pred Cceeec
Q 047728 467 GRICQK 472 (474)
Q Consensus 467 g~~l~~ 472 (474)
|++|++
T Consensus 446 Gk~lv~ 451 (638)
T 3sbq_A 446 GKWLVA 451 (638)
T ss_dssp SCEEEE
T ss_pred ccEEEE
Confidence 999876
No 357
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=82.98 E-value=29 Score=31.96 Aligned_cols=62 Identities=10% Similarity=0.054 Sum_probs=33.4
Q ss_pred CCeeEEEecC-CCCEEEEEECCCcEEEEEcCCcceeeeeee-----c--------CcceeEEEecCC--CeEEEeeCCC
Q 047728 221 DAISSLSMSE-DQNLLYSASWDKTFKVWRTSDYKCLESVIA-----H--------DDAVNSIVAGFD--GLVFTGSADG 283 (474)
Q Consensus 221 ~~V~~l~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~--------~~~v~~v~~~~~--~~l~~~~~dg 283 (474)
..|.+|.+.| +...|+.+..++.|...+ ..++.-..+.. + ...+.++.+.++ +.++++...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 4578899987 345566565455444332 22222222110 0 124788898886 4666666554
No 358
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=82.38 E-value=26 Score=31.04 Aligned_cols=138 Identities=13% Similarity=0.148 Sum_probs=73.0
Q ss_pred EecCCCCEEEEEE--CC--CcEEEEEcCCcceeeeeeecCcceeEEEecCCC-eEE-EeeCCCcEEEEEcccCCCceeee
Q 047728 227 SMSEDQNLLYSAS--WD--KTFKVWRTSDYKCLESVIAHDDAVNSIVAGFDG-LVF-TGSADGTVKVWRRELQGKGTKHF 300 (474)
Q Consensus 227 ~~~~~~~~l~s~s--~d--g~i~iwd~~~~~~~~~~~~~~~~v~~v~~~~~~-~l~-~~~~dg~i~iwd~~~~~~~~~~~ 300 (474)
.|+++++.|+-.. .+ ..|...++.. .....+..+.. ..+.+++ .|+ +......|.+-++.... ..
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~--~~-- 180 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS--EA-- 180 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE--EE--
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC--EE--
Confidence 5677888888765 33 4455555543 33444444322 2345566 444 43335666666654322 11
Q ss_pred eeeeeecccccEEEEEEcCCCCEEEEEcCC--CcEEEeecCcccccceeeeecceeeEEEEecCCEEEEEe--CCCcEEE
Q 047728 301 FSQTLLKQECAVTALAISPDAAIVYCGSSD--GLVNFWERELNLSHGGVLRGHKLAILCLVTAGNLVFSGS--ADMSICI 376 (474)
Q Consensus 301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--g~i~v~d~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sgs--~dg~i~i 376 (474)
.+.. .... ..+.|++.+|+-.... ..|..-+++.... ..+.. ..+..+++++++|+-+. ..+.|..
T Consensus 181 ---~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~--~~Lt~--~~~~~~~~~g~~Iy~~~~~~~~~i~~ 250 (302)
T 3s25_A 181 ---LFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP--VVLTE--ANIEHYNVYGSLIFYQRGGDNPALCV 250 (302)
T ss_dssp ---EEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC--EECSC--SCEEEEEEETTEEEEEECSSSCEEEE
T ss_pred ---EEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe--EEEeC--CCcceEEECCCEEEEEECCCCcEEEE
Confidence 1111 1122 2456888887765543 3566666665432 22222 22356889998887653 2456777
Q ss_pred EECCCCc
Q 047728 377 WRRKENE 383 (474)
Q Consensus 377 wd~~~~~ 383 (474)
-++....
T Consensus 251 ~~~DG~~ 257 (302)
T 3s25_A 251 VKNDGTG 257 (302)
T ss_dssp EETTSCC
T ss_pred EECCCCc
Confidence 7776554
No 359
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=81.89 E-value=28 Score=30.99 Aligned_cols=192 Identities=16% Similarity=0.119 Sum_probs=101.5
Q ss_pred CCCEEEEEECCCcEEEEEcCCcceee---------eeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcc---cCCCcee
Q 047728 231 DQNLLYSASWDKTFKVWRTSDYKCLE---------SVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRE---LQGKGTK 298 (474)
Q Consensus 231 ~~~~l~s~s~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~ 298 (474)
+...+++.+.+|.|+--.+.+.+... .++..+.-+..+.......++..+..|.+.-+... .......
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 45678889999999887765433211 12222223333334444477778888887666543 2221111
Q ss_pred eeeee---eeecccccEEEEEE-c--CCCCEEEEEcCCCcEEEeecCcccccc--e----eeeecceeeEEE--EecCCE
Q 047728 299 HFFSQ---TLLKQECAVTALAI-S--PDAAIVYCGSSDGLVNFWERELNLSHG--G----VLRGHKLAILCL--VTAGNL 364 (474)
Q Consensus 299 ~~~~~---~~~~~~~~v~~l~~-~--~~~~~l~~~~~dg~i~v~d~~~~~~~~--~----~~~~~~~~v~~~--~~~~~~ 364 (474)
..... .+ .....|..+.. . .++.+++..+..|.++...+..-.... . .+..+ ..+..+ ......
T Consensus 82 G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 82 GRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CEEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CeEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 11111 12 23344555543 2 356678889999999988664221110 0 11122 233222 224567
Q ss_pred EEEEeCCCcEEEEECCCCc-------eEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 365 VFSGSADMSICIWRRKENE-------HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 365 l~sgs~dg~i~iwd~~~~~-------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
++..+.+|.+..++...-. -.....+. -...|.++....++. .|+..+..|.++-.++..
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~--------~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDG--------AILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSC--------EEEEEETTSEEEEECGGG
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCC--------EEEEEEcCCceEEEEHHH
Confidence 8888889998888764211 11111222 234566665544444 677888899999888755
No 360
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=81.38 E-value=29 Score=30.92 Aligned_cols=195 Identities=15% Similarity=0.077 Sum_probs=105.5
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCcceee---------eeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc---
Q 047728 229 SEDQNLLYSASWDKTFKVWRTSDYKCLE---------SVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG--- 296 (474)
Q Consensus 229 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~--- 296 (474)
-++...+++.+.+|.|+--.+...+... .++..+.-+..+.......++..+..|.++-+....-...
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 3456788899999999988765432211 1222222333333444447888888998877765421110
Q ss_pred eeeee---eeeeecccccEEEEEEcC---CCCEEEEEcCCCcEEEeecCcccccc------eeeeecceeeEEEE--ecC
Q 047728 297 TKHFF---SQTLLKQECAVTALAISP---DAAIVYCGSSDGLVNFWERELNLSHG------GVLRGHKLAILCLV--TAG 362 (474)
Q Consensus 297 ~~~~~---~~~~~~~~~~v~~l~~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~------~~~~~~~~~v~~~~--~~~ 362 (474)
..... ...+. ....|..+...+ +..+|+..+..|.++...+..-.... ..+.. ...+..+. ...
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 00000 11122 233444443332 46678888999999987764321110 01111 22232222 246
Q ss_pred CEEEEEeCCCcEEEEECCCC-------ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCC
Q 047728 363 NLVFSGSADMSICIWRRKEN-------EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQ 434 (474)
Q Consensus 363 ~~l~sgs~dg~i~iwd~~~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~ 434 (474)
..++..+.+|.+..+....- .-.....+.. ...|..+....++. .|++.+..|..+...+..-
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~--------~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENP--------YLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCS--------EEEEEETTSEEEEEEGGGS
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCC--------eEEEEECCCceEEEEHHHh
Confidence 67888999999999987531 1111222332 34566665554444 5778888999999988653
No 361
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=78.59 E-value=43 Score=31.20 Aligned_cols=251 Identities=11% Similarity=-0.006 Sum_probs=129.1
Q ss_pred cCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728 149 GLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM 228 (474)
Q Consensus 149 ~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 228 (474)
..|..|+......+.-..||.|..|-....-.+-......... ..... ......|..|+.
T Consensus 75 ~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~-----------~~P~~---------v~~~~~i~~va~ 134 (423)
T 3mvd_K 75 PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSE-----------SKPDL---------IDLPGKALCISA 134 (423)
T ss_dssp SSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSS-----------SSCEE---------CCCSSCEEEEEE
T ss_pred CCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccc-----------cCCeE---------EcCCCCEEEEEc
Confidence 3477777778888888999999999765432211100000000 00000 001234666655
Q ss_pred cCCCCEEEEEECCCcEEEEEc--CC-cce---------eeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc
Q 047728 229 SEDQNLLYSASWDKTFKVWRT--SD-YKC---------LESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG 296 (474)
Q Consensus 229 ~~~~~~l~s~s~dg~i~iwd~--~~-~~~---------~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 296 (474)
. ..+.+.-..||.|+.|-. .. +++ ..........|..|+.... ..++-..+|.|..|-.....+.
T Consensus 135 G--~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~-hs~alt~~G~v~~wG~n~~GqL 211 (423)
T 3mvd_K 135 G--DSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGAD-HLVILTTAGKVFTVGCAEQGQL 211 (423)
T ss_dssp C--SSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSS-EEEEEETTSCEEEEECCTTSTT
T ss_pred C--cCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCC-eEEEEecCCeEEEeeCCcCCcc
Confidence 4 345555678899999975 22 211 0000112335666665533 5555678999999964422110
Q ss_pred e-----------------eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc-------eeee---
Q 047728 297 T-----------------KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG-------GVLR--- 349 (474)
Q Consensus 297 ~-----------------~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-------~~~~--- 349 (474)
. ...+..........|..++.... ..++.-..++.|..|-......+. ....
T Consensus 212 G~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~ 290 (423)
T 3mvd_K 212 GRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIK 290 (423)
T ss_dssp SSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEE
T ss_pred CCCcccccccccccccccccCCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEE
Confidence 0 00111111122334555555422 233333688999998644321111 0000
Q ss_pred ecceeeEEEEecCCEEEEEeCCCcEEEEECCCC---------c-eEEEEeecCCccceEEEEEeeCCccccccceEEEEE
Q 047728 350 GHKLAILCLVTAGNLVFSGSADMSICIWRRKEN---------E-HICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYS 419 (474)
Q Consensus 350 ~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~---------~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s 419 (474)
.....+..++....+.+.-..||.|+.|-.... . ......+..-...|..|+..... .+.
T Consensus 291 ~~~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~h----------s~a 360 (423)
T 3mvd_K 291 TELKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVC----------SYA 360 (423)
T ss_dssp ECCCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTE----------EEE
T ss_pred cCCCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCe----------EEE
Confidence 112346677777777778888999999965321 1 11112233333367777665443 233
Q ss_pred ecCCCcEEEEEccC
Q 047728 420 GSLDKSVKMWRVSE 433 (474)
Q Consensus 420 ~s~Dg~i~vw~~~~ 433 (474)
-..||.|..|=...
T Consensus 361 lt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 361 VTIDGKLYSWGSGV 374 (423)
T ss_dssp EETTSCEEEEECCT
T ss_pred EcCCCCEEEECCCC
Confidence 36899999997654
No 362
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=75.55 E-value=38 Score=32.19 Aligned_cols=108 Identities=18% Similarity=0.110 Sum_probs=60.2
Q ss_pred cceeEEEecCCC--eEEEeeCCCcEEEEEcccCCCceeee-eeeeee-----cccccEEEEEEcCC---CCEEEEE-cC-
Q 047728 263 DAVNSIVAGFDG--LVFTGSADGTVKVWRRELQGKGTKHF-FSQTLL-----KQECAVTALAISPD---AAIVYCG-SS- 329 (474)
Q Consensus 263 ~~v~~v~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~-----~~~~~v~~l~~~~~---~~~l~~~-~~- 329 (474)
...+.|+|.|++ .++++...|.|++++........... +..... ........|+|+|+ ..+|++. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 456889999998 48888899999999753211100000 001111 12467889999996 3334333 21
Q ss_pred -C----------CcEEEeecCcc----------cccceee---eecceeeEEEEecCCEEEEEeC
Q 047728 330 -D----------GLVNFWERELN----------LSHGGVL---RGHKLAILCLVTAGNLVFSGSA 370 (474)
Q Consensus 330 -d----------g~i~v~d~~~~----------~~~~~~~---~~~~~~v~~~~~~~~~l~sgs~ 370 (474)
+ ..|.-|.+... +.+.... ..|...-+.|.+||.+.++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 13444554321 1111111 2467777889999987776654
No 363
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.49 E-value=12 Score=40.39 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=32.3
Q ss_pred CeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeee
Q 047728 222 AISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVI 259 (474)
Q Consensus 222 ~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 259 (474)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566667788999999999999999999999988754
No 364
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=70.52 E-value=74 Score=30.16 Aligned_cols=249 Identities=12% Similarity=0.104 Sum_probs=128.8
Q ss_pred CcEEEEEEcCCEEEEeeCCCcEEEEeCCc------cc------------------------------ccccc-------C
Q 047728 111 GHIYSLAAAGDLLYTGSDSKNIRVWKNQR------EF------------------------------SGFKS-------N 147 (474)
Q Consensus 111 ~~i~~~~~~~~~l~tgs~dg~v~vwd~~~------~~------------------------------~~~~~-------h 147 (474)
..|..++..+...+.-..||.|..|=.+. .. ..... .
T Consensus 67 ~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~ 146 (473)
T 3of7_A 67 AKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAE 146 (473)
T ss_dssp TCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHT
T ss_pred CCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccC
Confidence 46888888888777777899999993110 00 00000 1
Q ss_pred ccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEE
Q 047728 148 SGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLS 227 (474)
Q Consensus 148 ~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 227 (474)
...|..|+......+.-..||.|..|-......- +++.... .... .........+ ....|..|+
T Consensus 147 ~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~G---qLG~~~~----------~~~~-~~~P~~v~~l--~~~~i~~va 210 (473)
T 3of7_A 147 GHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEG---ILGFYQD----------KIKI-QKTPWKVPTF--SKYNIVQLA 210 (473)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECEEETTE---EEESBTT----------TBSC-EEEEEECCCC--CSSCEEEEE
T ss_pred CCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCC---ccCCCCC----------CCcc-ccCcEEcccc--CCCCEEEEE
Confidence 3568888887788888889999999975211000 0000000 0000 0000000000 122466776
Q ss_pred ecCCCCEEEEEECCCcEEEEEcCCcceee-------------eeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCC
Q 047728 228 MSEDQNLLYSASWDKTFKVWRTSDYKCLE-------------SVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQG 294 (474)
Q Consensus 228 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-------------~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~ 294 (474)
.. ....+.-..+|.|..|-....-.+. ........|..|+.... ..++-..+|.|..|-.....
T Consensus 211 ~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~-hs~alt~~G~v~~wG~n~~G 287 (473)
T 3of7_A 211 PG--KDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGEN-HCFALTKDNKLVSWGLNQFG 287 (473)
T ss_dssp EC--SSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSS-EEEEEETTSCEEEEEECTTS
T ss_pred ec--CCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCC-eEEEEecCCCEEEeCCCCCC
Confidence 54 3456666789999999654321110 00001135666665433 45555679999999754322
Q ss_pred Cc----------eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc-------------------
Q 047728 295 KG----------TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG------------------- 345 (474)
Q Consensus 295 ~~----------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~------------------- 345 (474)
+. ....+..........|..++... ...++-..+|.|+.|-....-.+.
T Consensus 288 qlG~~~~~~~~~~~~~P~~v~~~~~~~i~~ia~G~--~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~ 365 (473)
T 3of7_A 288 QCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGE--HHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKAR 365 (473)
T ss_dssp TTCCCSCCCTTCEEEEEEECCCCTTCCEEEEEECS--SEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEE
T ss_pred CcCCCCcccCCceeeccccccccCCccEEEEEeCC--CeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCcee
Confidence 11 00111111111224566666543 333444678889998643221110
Q ss_pred eeeee----cceeeEEEEecCCEEEEEeCCCcEEEEECC
Q 047728 346 GVLRG----HKLAILCLVTAGNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 346 ~~~~~----~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~ 380 (474)
..... ....+..++......++-..||.|+.|-..
T Consensus 366 ~~~~P~~v~~~~~v~~Ia~G~~hs~al~~~G~vy~wG~n 404 (473)
T 3of7_A 366 AVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFG 404 (473)
T ss_dssp EEEEEEECCSSCCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred eeccCcccCCCCceEEEEeCCCeEEEEeCCCcEEEeeCC
Confidence 00000 111466677667777777889999999764
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=69.98 E-value=55 Score=28.46 Aligned_cols=206 Identities=10% Similarity=0.024 Sum_probs=108.4
Q ss_pred eeeeeeeec---CcEEEEEEc--CCEEEEeeCCCcEEEEe---CCc--cccccccCccCEEEEEec---CCEEEEEeCCC
Q 047728 102 LIGSLVREE---GHIYSLAAA--GDLLYTGSDSKNIRVWK---NQR--EFSGFKSNSGLVKAIVIS---NEKIFSGHQDG 168 (474)
Q Consensus 102 ~~~~l~~h~---~~i~~~~~~--~~~l~tgs~dg~v~vwd---~~~--~~~~~~~h~~~V~~i~~~---~~~l~s~~~dg 168 (474)
.++...+|. +.+..+... .++|+.-+.+|.++--. ... ....+. ....|..+... +.+++..+.+|
T Consensus 12 wir~~~g~~~~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G 90 (276)
T 3no0_A 12 SIIPVEELPLEKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKG 90 (276)
T ss_dssp EEEEGGGCCSSCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTS
T ss_pred eeeeccCCCCCCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCC
Confidence 344444542 234443332 55666667778766433 110 000122 34556665433 46899999999
Q ss_pred eEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEE
Q 047728 169 KIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWR 248 (474)
Q Consensus 169 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd 248 (474)
.++...+..-. ........ ..+ ...+.+..+........|+..+..|.+..+.
T Consensus 91 ~iKr~~l~~~~-~~~~G~~~-------------------------i~l-kegD~l~~~~~~~~~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 91 YVKKIPLAEFE-YKAQGMPI-------------------------IKL-TEGDEVVSIASSVDETHILLFTKKGRVARFS 143 (276)
T ss_dssp EEEEEEGGGTT-TCSTTEEC-------------------------SCC-CTTCCEEEEEECCSSCEEEEEETTSEEEEEE
T ss_pred EEEEEEHHHhh-hhcCCeEE-------------------------Eec-CCCCEEEEEEEeCCCCEEEEEECCCEEEEEE
Confidence 99998876543 11000000 001 1234555555555566888889999998887
Q ss_pred cCC---------cceeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCCc---eeeeeeeeeecccccEEEE
Q 047728 249 TSD---------YKCLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGKG---TKHFFSQTLLKQECAVTAL 315 (474)
Q Consensus 249 ~~~---------~~~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~l 315 (474)
... |.....+.. .+.|..+...+++ .++..+..|.++...+..-... ...... . ...+.+..+
T Consensus 144 ~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~--i-~~~~~lv~~ 219 (276)
T 3no0_A 144 VREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEV--S-GTKDTLVDL 219 (276)
T ss_dssp GGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEEC--C-CSSSCEEEE
T ss_pred hhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEE--E-cCCCcEEEE
Confidence 632 112222322 3455555444444 8888999999999886532211 111111 1 223334444
Q ss_pred EEcCCCCEEEEEcCCCcEEE--eecC
Q 047728 316 AISPDAAIVYCGSSDGLVNF--WERE 339 (474)
Q Consensus 316 ~~~~~~~~l~~~~~dg~i~v--~d~~ 339 (474)
....+...++..+.+|.+.. ++..
T Consensus 220 ~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 220 IPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 33333445666667777766 6654
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=65.77 E-value=67 Score=27.89 Aligned_cols=203 Identities=10% Similarity=-0.037 Sum_probs=108.3
Q ss_pred CCeeEEEecCCCCEEEEEECCCcEEEEEc---CCcceeeeeeecCcceeEEEec--CCCeEEEeeCCCcEEEEEcccCCC
Q 047728 221 DAISSLSMSEDQNLLYSASWDKTFKVWRT---SDYKCLESVIAHDDAVNSIVAG--FDGLVFTGSADGTVKVWRRELQGK 295 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~---~~~~~~~~~~~~~~~v~~v~~~--~~~~l~~~~~dg~i~iwd~~~~~~ 295 (474)
+.+..+........|+.-+.+|.++--.+ ........+. ....|..+... ++..++..+.+|.++-..+..-..
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 44555544445556777777887765433 2111111122 34556665442 233899999999999998764321
Q ss_pred ceeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccce-------eeeecceeeEEE--EecCCEEE
Q 047728 296 GTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG-------VLRGHKLAILCL--VTAGNLVF 366 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-------~~~~~~~~v~~~--~~~~~~l~ 366 (474)
.........+. ....+..+........++..+..|.+..++...-..... +.......+..+ ..++..++
T Consensus 103 ~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll 181 (276)
T 3no0_A 103 KAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLL 181 (276)
T ss_dssp CSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEE
T ss_pred hcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEE
Confidence 11111112222 344565565555666788888999988876432111100 000111233333 23466899
Q ss_pred EEeCCCcEEEEECCCCceE-----EEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEE--EEccCC
Q 047728 367 SGSADMSICIWRRKENEHI-----CLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM--WRVSEQ 434 (474)
Q Consensus 367 sgs~dg~i~iwd~~~~~~~-----~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v--w~~~~~ 434 (474)
..+..|.++...+..-... -+..+ ...+.+..+....+.. .++..+.+|.+.. +++.+-
T Consensus 182 ~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~--------~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 182 VITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEV--------ELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp EEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEE--------EEEEEETTSCEEEEEEEGGGS
T ss_pred EEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCC--------EEEEEcCCCeEEEeeeCHHHC
Confidence 9999999998876421100 01222 2334555554433333 4666677888877 877653
No 367
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=64.84 E-value=84 Score=28.70 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=55.3
Q ss_pred CeeEEEecC-C-CCEEEEEECCCcEEEEEcCCcceeeeeee-------------------cCcceeEEEecCC--CeEEE
Q 047728 222 AISSLSMSE-D-QNLLYSASWDKTFKVWRTSDYKCLESVIA-------------------HDDAVNSIVAGFD--GLVFT 278 (474)
Q Consensus 222 ~V~~l~~~~-~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------------------~~~~v~~v~~~~~--~~l~~ 278 (474)
.|.+|++.| + ...|++++..+.|...+ ..++.-..+.. ....+.+|.+.|. +.+++
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 577888887 2 56677776666555442 22222222111 1235778888873 35566
Q ss_pred eeCCCcEEEEEcccCCCceeeeeeeeeec--------ccccEEEEEEcCC-CCEEEEEcCCCcEEEe
Q 047728 279 GSADGTVKVWRRELQGKGTKHFFSQTLLK--------QECAVTALAISPD-AAIVYCGSSDGLVNFW 336 (474)
Q Consensus 279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------~~~~v~~l~~~~~-~~~l~~~~~dg~i~v~ 336 (474)
+..++.|.. .................. ....+.+++++|. ...|+++...+ |...
T Consensus 195 g~~~ggl~~--s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 195 GMSSGGVFE--STDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp EEETBEEEE--ESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred EECCCCEEE--ECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 655554333 222222111110000000 0135889999985 46677676554 4433
No 368
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=64.25 E-value=29 Score=34.86 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=31.0
Q ss_pred CCeeEEEecCCCCEEEEEECCCcEEEEEcCCcceeeeeee
Q 047728 221 DAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKCLESVIA 260 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 260 (474)
..|.++.+ +..++++-+.|.++|+|++++++++.+..-
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45666655 467999999999999999999998877654
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=60.54 E-value=35 Score=34.32 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=30.5
Q ss_pred eeeEEEEecCCEEEEEeCCCcEEEEECCCCceEEEEee
Q 047728 353 LAILCLVTAGNLVFSGSADMSICIWRRKENEHICLSML 390 (474)
Q Consensus 353 ~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 390 (474)
..|.++.++..++++-+.|.++|+|++.+++......+
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45667788899999999999999999999984433333
No 370
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=56.97 E-value=1.1e+02 Score=27.38 Aligned_cols=207 Identities=10% Similarity=0.051 Sum_probs=110.7
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcC---------Ccceeeeee--ecCcceeEEEecC----CCeEEEeeCCC
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTS---------DYKCLESVI--AHDDAVNSIVAGF----DGLVFTGSADG 283 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~---------~~~~~~~~~--~~~~~v~~v~~~~----~~~l~~~~~dg 283 (474)
..+.+..+........|+.-+..|.++-.... .|..+..+- .....|.++...+ +..++..+.+|
T Consensus 40 e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 40 QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 34455555555556677777778877766532 122221111 1234555554333 33899999999
Q ss_pred cEEEEEcccCCCcee-eeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC--cccccce-------eeeecce
Q 047728 284 TVKVWRRELQGKGTK-HFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE--LNLSHGG-------VLRGHKL 353 (474)
Q Consensus 284 ~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~--~~~~~~~-------~~~~~~~ 353 (474)
.++--.+..-..... ......+.. ...+..+........|+..+..|.+..+... .-..... +......
T Consensus 120 ~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d 198 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDD 198 (327)
T ss_dssp EEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTC
T ss_pred EEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCC
Confidence 999988764332111 111122223 4445555555555677778888988877665 2111110 0011223
Q ss_pred eeEEEEe--cCCEEEEEeCCCcEEEEECCCC-------ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCC
Q 047728 354 AILCLVT--AGNLVFSGSADMSICIWRRKEN-------EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDK 424 (474)
Q Consensus 354 ~v~~~~~--~~~~l~sgs~dg~i~iwd~~~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg 424 (474)
.+.++.. .+.+++..+..|.++.-.+..- +-.....+..-.+.+..+....+.. -++..+.+|
T Consensus 199 ~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~--------~i~l~T~~G 270 (327)
T 3uc1_A 199 RLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDS--------ELYAVTSGG 270 (327)
T ss_dssp CEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTC--------EEEEEEGGG
T ss_pred EEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCc--------cEEEEcCCC
Confidence 3444432 4568999999999988876422 1111112222234455554443333 355566778
Q ss_pred cEEEEEccCC
Q 047728 425 SVKMWRVSEQ 434 (474)
Q Consensus 425 ~i~vw~~~~~ 434 (474)
.+.-+++.+-
T Consensus 271 ~~ir~~~~~i 280 (327)
T 3uc1_A 271 GVIRTAARQV 280 (327)
T ss_dssp CEEEEEGGGS
T ss_pred eEEEEehhhc
Confidence 8777777653
No 371
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=56.89 E-value=1.1e+02 Score=27.21 Aligned_cols=197 Identities=10% Similarity=0.016 Sum_probs=107.0
Q ss_pred CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728 158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS 237 (474)
Q Consensus 158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 237 (474)
.+.+++.+.+|.|+--.+..-........+ .. ..-....+.+..+........++.
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g-------~~-----------------~~~lke~D~l~~~~~~~~~~~ll~ 63 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKG-------LS-----------------SFDLNDGDEIVIALCVNTHDYLFM 63 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCC-------EE-----------------CCCCCTTCCEEEEEEEETTCEEEE
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCC-------ce-----------------ecccCCCCEEEEEEEECCCCEEEE
Confidence 557888999999988766543221100000 00 000012344555555555667888
Q ss_pred EECCCcEEEEEcCC---------cce---eeeeeecCcceeEEEec----CCCeEEEeeCCCcEEEEEcccCCCce-eee
Q 047728 238 ASWDKTFKVWRTSD---------YKC---LESVIAHDDAVNSIVAG----FDGLVFTGSADGTVKVWRRELQGKGT-KHF 300 (474)
Q Consensus 238 ~s~dg~i~iwd~~~---------~~~---~~~~~~~~~~v~~v~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~ 300 (474)
.+..|.++-+.... |.. ...+.. ...|.++... ++..++..+..|.++...+..-.... ...
T Consensus 64 ~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~ 142 (312)
T 1suu_A 64 ISNEGKLYLINAYEIKDSSRASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGV 142 (312)
T ss_dssp EETTSEEEEEEGGGSCC-------CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CE
T ss_pred EECCCeEEEEEHHHCCCCCccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcE
Confidence 88899887776532 111 111222 3344444333 23378888999999998875432211 111
Q ss_pred eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccce-------eeeecceeeEEEEe--cCCEEEEEeCC
Q 047728 301 FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG-------VLRGHKLAILCLVT--AGNLVFSGSAD 371 (474)
Q Consensus 301 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-------~~~~~~~~v~~~~~--~~~~l~sgs~d 371 (474)
....+.. ...+..+....+...++..+.+|.+..+....-..... +.......+..+.. ++..+++.+..
T Consensus 143 ~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~ 221 (312)
T 1suu_A 143 IVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSEN 221 (312)
T ss_dssp ECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETT
T ss_pred EEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECC
Confidence 1222333 45555555555566788888999988887653211111 00111233444332 46678889999
Q ss_pred CcEEEEECC
Q 047728 372 MSICIWRRK 380 (474)
Q Consensus 372 g~i~iwd~~ 380 (474)
|..+..++.
T Consensus 222 G~~kr~~~~ 230 (312)
T 1suu_A 222 GYGKRLNMS 230 (312)
T ss_dssp SEEEEEEGG
T ss_pred CceEEEEHH
Confidence 999988874
No 372
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=53.28 E-value=1.2e+02 Score=26.98 Aligned_cols=192 Identities=14% Similarity=0.082 Sum_probs=102.5
Q ss_pred CCEEEEeeCCCcEEEEe---CCcc-----------ccccccCccCEEEEE-ec----CCEEEEEeCCCeEEEEecCCCCc
Q 047728 120 GDLLYTGSDSKNIRVWK---NQRE-----------FSGFKSNSGLVKAIV-IS----NEKIFSGHQDGKIRVWKVSSKDA 180 (474)
Q Consensus 120 ~~~l~tgs~dg~v~vwd---~~~~-----------~~~~~~h~~~V~~i~-~~----~~~l~s~~~dg~i~vwd~~~~~~ 180 (474)
.+.|+.-+..|.++-.. +... +..+. ....|.++. .. +.+++..+.+|.|+.-.+..-..
T Consensus 53 ~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~ 131 (327)
T 3uc1_A 53 HDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDS 131 (327)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCC
T ss_pred CCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhc
Confidence 55666666777765443 2211 11122 234555553 33 56899999999999988765332
Q ss_pred ceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcC--Ccc-----
Q 047728 181 SIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTS--DYK----- 253 (474)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~--~~~----- 253 (474)
........ ..+. ..+.+..+........|+..+..|.+..+... .-.
T Consensus 132 ~~r~G~~~-------------------------i~lk-e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~ 185 (327)
T 3uc1_A 132 NRSGGIVA-------------------------VNLR-DNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA 185 (327)
T ss_dssp CCSSCEES-------------------------CBCC-TTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT
T ss_pred cccCceEE-------------------------EEEC-CCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcC
Confidence 11100000 0111 23445555555556678888999999888876 321
Q ss_pred ----eeeeeeecCcceeEEEecCCC-eEEEeeCCCcEEEEEcccCCC---ceeeeeeeeeecccccEEEEEEcCCCCEEE
Q 047728 254 ----CLESVIAHDDAVNSIVAGFDG-LVFTGSADGTVKVWRRELQGK---GTKHFFSQTLLKQECAVTALAISPDAAIVY 325 (474)
Q Consensus 254 ----~~~~~~~~~~~v~~v~~~~~~-~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 325 (474)
....+. ..+.|.++...+++ .++..+..|.++.-.+..-.. .........+......+..+....+...++
T Consensus 186 a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~ 264 (327)
T 3uc1_A 186 TSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELY 264 (327)
T ss_dssp SBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEE
T ss_pred CCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEE
Confidence 111222 24456666555444 889999999999887653221 111111222222123344444333444555
Q ss_pred EEcCCCcEEEeecC
Q 047728 326 CGSSDGLVNFWERE 339 (474)
Q Consensus 326 ~~~~dg~i~v~d~~ 339 (474)
..+.+|.+..++..
T Consensus 265 l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 265 AVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEGGGCEEEEEGG
T ss_pred EEcCCCeEEEEehh
Confidence 56667766666544
No 373
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=51.41 E-value=1.3e+02 Score=26.56 Aligned_cols=204 Identities=15% Similarity=0.074 Sum_probs=108.3
Q ss_pred CCeeEEEecCCCCEEEEEECCCcEEEEEcC---------Ccceee---eeeecCcceeEEEec----CCCeEEEeeCCCc
Q 047728 221 DAISSLSMSEDQNLLYSASWDKTFKVWRTS---------DYKCLE---SVIAHDDAVNSIVAG----FDGLVFTGSADGT 284 (474)
Q Consensus 221 ~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~---------~~~~~~---~~~~~~~~v~~v~~~----~~~~l~~~~~dg~ 284 (474)
+.+..+........|+..+..|.++-+... .|..+. .+. ....|.++... ++..++..+..|.
T Consensus 42 D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~ 120 (307)
T 1zi0_A 42 DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGT 120 (307)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCe
Confidence 344444444456677778888887766542 122221 122 23455555432 2337899999999
Q ss_pred EEEEEcccCCCce-eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccce-------eeeecceeeE
Q 047728 285 VKVWRRELQGKGT-KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHGG-------VLRGHKLAIL 356 (474)
Q Consensus 285 i~iwd~~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-------~~~~~~~~v~ 356 (474)
++--.+..-.... .......+... +.+..+....+...++..+.+|.+..++...-..... +.......+.
T Consensus 121 ~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv 199 (307)
T 1zi0_A 121 VKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVV 199 (307)
T ss_dssp EEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEE
T ss_pred EEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEE
Confidence 9999875322211 11111222233 4555554444556677788888888776543211110 0111223344
Q ss_pred EEEe--cCCEEEEEeCCCcEEEEECCCC-------ceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEE
Q 047728 357 CLVT--AGNLVFSGSADMSICIWRRKEN-------EHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVK 427 (474)
Q Consensus 357 ~~~~--~~~~l~sgs~dg~i~iwd~~~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~ 427 (474)
.+.. ++..+++.+..|.++-.++..- +-.....+..-.+.+..+....+.. -++..+.+|.+.
T Consensus 200 ~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~--------~l~~~t~~g~~i 271 (307)
T 1zi0_A 200 SLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCD--------QIMMITDAGTLV 271 (307)
T ss_dssp EEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTC--------EEEEEESSCCEE
T ss_pred EEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCc--------eEEEEcCCCcEE
Confidence 4432 4567888899999988877321 1111222333335555554433333 355566677777
Q ss_pred EEEccCC
Q 047728 428 MWRVSEQ 434 (474)
Q Consensus 428 vw~~~~~ 434 (474)
-+.+..-
T Consensus 272 r~~~~~i 278 (307)
T 1zi0_A 272 RTRVSEI 278 (307)
T ss_dssp EEEGGGS
T ss_pred EEecccc
Confidence 7777653
No 374
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=48.70 E-value=1.6e+02 Score=26.85 Aligned_cols=150 Identities=14% Similarity=0.040 Sum_probs=81.9
Q ss_pred ecCCCCEEEEEECCCcEEEEEcCCc---------ceeeeeeecCcceeEEEecCC-CeEEEeeCCCcEEEEEc---ccCC
Q 047728 228 MSEDQNLLYSASWDKTFKVWRTSDY---------KCLESVIAHDDAVNSIVAGFD-GLVFTGSADGTVKVWRR---ELQG 294 (474)
Q Consensus 228 ~~~~~~~l~s~s~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~v~~~~~-~~l~~~~~dg~i~iwd~---~~~~ 294 (474)
+-|+...+++.+.+|.|+--.+... ..-..++. .+.+..+..... ..++..+..|.+.-+.. ....
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 3567789999999999998765321 11122222 344544444333 36777788888766653 2221
Q ss_pred Cceeeeeee---eeecccccEEEEE-EcC--CCCEEEEEcCCCcEEEeecCcccccc------eeeeecceeeEE--EEe
Q 047728 295 KGTKHFFSQ---TLLKQECAVTALA-ISP--DAAIVYCGSSDGLVNFWERELNLSHG------GVLRGHKLAILC--LVT 360 (474)
Q Consensus 295 ~~~~~~~~~---~~~~~~~~v~~l~-~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~------~~~~~~~~~v~~--~~~ 360 (474)
......... .+. ....|.++. +.. +..+|+.++..|.++...+..-.... ..+.. ...+.. +..
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~ 159 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD 159 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence 111111111 122 334455544 432 45689999999999987754321110 01111 122222 223
Q ss_pred cCCEEEEEeCCCcEEEEECC
Q 047728 361 AGNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 361 ~~~~l~sgs~dg~i~iwd~~ 380 (474)
....++..+.+|.+..++..
T Consensus 160 ~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGG
T ss_pred CCceEEEEeCCCeEEEEEcc
Confidence 45678888889988888764
No 375
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.05 E-value=3.1e+02 Score=28.80 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=26.2
Q ss_pred ceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccCCC
Q 047728 396 PVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSEQA 435 (474)
Q Consensus 396 ~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~~~ 435 (474)
.+.+++..++.. ++++-+.|+++|+|++.+++
T Consensus 237 ~~~~~~~~~~~~--------~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 237 TIISMIFLSTYN--------VLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp CEEEEEEETTTT--------EEEEEETTCEEEEEETTTTE
T ss_pred eEEEEeecCCCc--------EEEEEECCCEEEEEECCCCC
Confidence 456667777766 89999999999999998864
No 376
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=43.73 E-value=68 Score=31.11 Aligned_cols=71 Identities=18% Similarity=0.290 Sum_probs=43.1
Q ss_pred eeEEEecCCC---eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccEE-EEEEcCCCCEEEEEcCCCcEEE
Q 047728 265 VNSIVAGFDG---LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVT-ALAISPDAAIVYCGSSDGLVNF 335 (474)
Q Consensus 265 v~~v~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~~~~~dg~i~v 335 (474)
.++|+....+ .++.|+.+|.|.=..+..............+.....+|. .+.++++...|++++.++.++|
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 4555544333 788899999876555543221101111122223356775 8999999999999988766555
No 377
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=42.60 E-value=1.2e+02 Score=32.79 Aligned_cols=34 Identities=9% Similarity=0.021 Sum_probs=27.6
Q ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc
Q 047728 311 AVTALAISPDAAIVYCGSSDGLVNFWERELNLSH 344 (474)
Q Consensus 311 ~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 344 (474)
.+.+++..++..++++-+.|+++++|++.++..+
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v 272 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 272 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeE
Confidence 4455666778899999999999999999887554
No 378
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=40.26 E-value=2e+02 Score=25.57 Aligned_cols=239 Identities=11% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEE
Q 047728 158 NEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYS 237 (474)
Q Consensus 158 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s 237 (474)
.+.+++.+.+|.|+--.+..-+.......... -.+.+..+........|+.
T Consensus 5 e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-----------------------------e~D~l~~~~~~~t~d~ll~ 55 (323)
T 1wp5_A 5 EDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-----------------------------DTDRLLAMLEMNTKDVLLL 55 (323)
T ss_dssp CEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-----------------------------TTCCEEEEEEEETTSEEEE
T ss_pred CcEEEEEeCCCEEEEeEHHHhhhcCccccccC-----------------------------CCCEEEEEEEECCCCEEEE
Q ss_pred EECCCcEEEEEc---------CCcc---eeeeeeecCcceeEEEecC---CCeEEEeeCCCcEEEEEcccCCCce-eeee
Q 047728 238 ASWDKTFKVWRT---------SDYK---CLESVIAHDDAVNSIVAGF---DGLVFTGSADGTVKVWRRELQGKGT-KHFF 301 (474)
Q Consensus 238 ~s~dg~i~iwd~---------~~~~---~~~~~~~~~~~v~~v~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~ 301 (474)
.+..|.+.-+.. ..|. ....+.....-+..+.... +..++..+.+|.++-..+..-.... ..-.
T Consensus 56 fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~ 135 (323)
T 1wp5_A 56 FTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPL 135 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCE
T ss_pred EECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCce
Q ss_pred eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEee---------cCcccccceeeeecceeeEEEEecCC-EEEEEeCC
Q 047728 302 SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWE---------RELNLSHGGVLRGHKLAILCLVTAGN-LVFSGSAD 371 (474)
Q Consensus 302 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d---------~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sgs~d 371 (474)
..........+..+........++..+.+|.+..+. ...+........+.....+.+..++. .+++.+..
T Consensus 136 ~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~ 215 (323)
T 1wp5_A 136 TGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQR 215 (323)
T ss_dssp ECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETT
T ss_pred EEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECC
Q ss_pred CcEEEEECC--------CCceEEEEeecCCccceEEEEEeeCCccccccceEEEEEecCCCcEEEEEccC
Q 047728 372 MSICIWRRK--------ENEHICLSMLTGHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 372 g~i~iwd~~--------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
|..+..++. ......+..+......+..+....++. -++..+..|.+.-..+.+
T Consensus 216 G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~--------~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 216 GAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSD--------TIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp SEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTC--------EEEEEETTSCEEEEEGGG
T ss_pred CceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCC--------eEEEEeCCCeEEEEEhhh
No 379
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=37.27 E-value=2.7e+02 Score=26.20 Aligned_cols=228 Identities=11% Similarity=0.072 Sum_probs=107.5
Q ss_pred ccCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeee--cC-CCCeEEEeeeccce----eee--
Q 047728 148 SGLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCS--MK-PSNYIEVRRHRNGL----WIK-- 218 (474)
Q Consensus 148 ~~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~----~~~-- 218 (474)
...|..|+.-....+.-..||.|..|-....-.+-..........+++-... .+ ..........+..+ +..
T Consensus 66 ~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~ 145 (473)
T 3of7_A 66 EAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLA 145 (473)
T ss_dssp TTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHH
T ss_pred CCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCccc
Confidence 3468888888888888889999999976543222110000000000000000 00 00000000000000 000
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcC---Ccce------------eeeeee-cCcceeEEEecCCCeEEEeeCC
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTS---DYKC------------LESVIA-HDDAVNSIVAGFDGLVFTGSAD 282 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~---~~~~------------~~~~~~-~~~~v~~v~~~~~~~l~~~~~d 282 (474)
....|..|+.. ....+.-..||.|+.|-.. .+++ ...+.. ....|..|+...+ ..++-..+
T Consensus 146 ~~~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~-hs~alt~~ 222 (473)
T 3of7_A 146 EGHKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKD-HILFLDEE 222 (473)
T ss_dssp TTCCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSS-EEEEEETT
T ss_pred CCCcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCC-eEEEEeCC
Confidence 12456666654 3455556788999998741 1111 001111 1224667766533 55555789
Q ss_pred CcEEEEEcccCCCceeee-------eeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc-----------
Q 047728 283 GTVKVWRRELQGKGTKHF-------FSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH----------- 344 (474)
Q Consensus 283 g~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~----------- 344 (474)
|.|..|-.....+..... ...........|..++.. ....++-..+|.|+.|-....-.+
T Consensus 223 G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASG--ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp SCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEEC--SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred CeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecC--CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 999999654322110000 000000011356666554 344455567899999964322111
Q ss_pred ----ceeeeecceeeEEEEecCCEEEEEeCCCcEEEEECC
Q 047728 345 ----GGVLRGHKLAILCLVTAGNLVFSGSADMSICIWRRK 380 (474)
Q Consensus 345 ----~~~~~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~ 380 (474)
..+.......+..++......+.-..||.|+.|-..
T Consensus 301 ~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n 340 (473)
T 3of7_A 301 VTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRL 340 (473)
T ss_dssp EEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEEC
T ss_pred eeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECC
Confidence 000111123466676666777777889999999753
No 380
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=36.78 E-value=2.5e+02 Score=25.73 Aligned_cols=244 Identities=14% Similarity=0.110 Sum_probs=129.5
Q ss_pred CcEEEEEEcCCEEEEeeCCCcEEEEeCCc------c--------ccccccCccCEEEEEecCCEEEEEeCCCeEEEEec-
Q 047728 111 GHIYSLAAAGDLLYTGSDSKNIRVWKNQR------E--------FSGFKSNSGLVKAIVISNEKIFSGHQDGKIRVWKV- 175 (474)
Q Consensus 111 ~~i~~~~~~~~~l~tgs~dg~v~vwd~~~------~--------~~~~~~h~~~V~~i~~~~~~l~s~~~dg~i~vwd~- 175 (474)
..|..++......+.-..||.|..|-.+. . ......-...|..|+.-....+.-..||.|..|-.
T Consensus 59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~wG~~ 138 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSF 138 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECE
T ss_pred CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEeeCC
Confidence 56888888877777778899999994221 0 00000113467778777778888889999999975
Q ss_pred -CCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEecCCCCEEEEEECCCcEEEEEcCCcce
Q 047728 176 -SSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVWRTSDYKC 254 (474)
Q Consensus 176 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 254 (474)
...... +...... . ... +..+ .....|..|+.-. .+.+.-..||.|..|-....-.
T Consensus 139 ~n~~Gql-----G~~~~~~----------~-~~~---P~~v--~~~~~i~~ia~G~--~hs~alt~~G~v~~wG~n~~Gq 195 (413)
T 1a12_A 139 RDNNGVI-----GLLEPMK----------K-SMV---PVQV--QLDVPVVKVASGN--DHLVMLTADGDLYTLGCGEQGQ 195 (413)
T ss_dssp EETTEEE-----ESSBBTB----------C-EEE---EEEE--CCSSCEEEEEECS--SEEEEEETTSCEEEEECCTTST
T ss_pred cCCCCcc-----CcCCccc----------c-ccC---CEEe--cCCCCEEEEEecC--ceEEEEcCCCCEEEeeCCCCCc
Confidence 221100 0000000 0 000 0000 1234566666543 4555667889999996543111
Q ss_pred ee----------------------eeee------cCcceeEEEecCCCeEEEeeCCCcEEEEEcccCCCc-----eeeee
Q 047728 255 LE----------------------SVIA------HDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQGKG-----TKHFF 301 (474)
Q Consensus 255 ~~----------------------~~~~------~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~ 301 (474)
+. .+.. ....|..|+.... ..++-..+|.|..|-.....+. .....
T Consensus 196 LG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~-hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~ 274 (413)
T 1a12_A 196 LGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY-FTFAISHEGHVYGFGLSNYHQLGTPGTESCFI 274 (413)
T ss_dssp TCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETT-EEEEEETTCCEEEEECCTTSTTSCSSCSCEEE
T ss_pred cCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCC-EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccc
Confidence 00 0100 1234666666544 3444458999999976532211 00011
Q ss_pred eeeeec---ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc------eeee----ecceeeEEEEecCCEEEEE
Q 047728 302 SQTLLK---QECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG------GVLR----GHKLAILCLVTAGNLVFSG 368 (474)
Q Consensus 302 ~~~~~~---~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~------~~~~----~~~~~v~~~~~~~~~l~sg 368 (474)
...... ....|..++... ...++-..||.|+.|-....-.+. .... .....+..++......++-
T Consensus 275 P~~v~~l~~~~~~v~~ia~G~--~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~hs~al 352 (413)
T 1a12_A 275 PQNLTSFKNSTKSWVGFSGGQ--HHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAV 352 (413)
T ss_dssp EEECGGGCCTTCCEEEEEECS--SEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEE
T ss_pred cEEchhccCCCceEEEEeccc--ceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcceEEEE
Confidence 111111 113366666543 344445678999999653321110 0000 1112567777777777788
Q ss_pred eCCCcEEEEECC
Q 047728 369 SADMSICIWRRK 380 (474)
Q Consensus 369 s~dg~i~iwd~~ 380 (474)
..||.|+.|-..
T Consensus 353 t~~G~v~~wG~n 364 (413)
T 1a12_A 353 TKDGRVFAWGMG 364 (413)
T ss_dssp ETTSCEEEEECC
T ss_pred eCCCCEEEecCC
Confidence 899999999764
No 381
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=36.51 E-value=3.5e+02 Score=27.25 Aligned_cols=197 Identities=9% Similarity=0.039 Sum_probs=94.8
Q ss_pred eEEE-ecCCCCEEEEE-E----CCCcEEEEEcCCcceeee-ee-ecCc------ceeEEEecCCCeEEEee---------
Q 047728 224 SSLS-MSEDQNLLYSA-S----WDKTFKVWRTSDYKCLES-VI-AHDD------AVNSIVAGFDGLVFTGS--------- 280 (474)
Q Consensus 224 ~~l~-~~~~~~~l~s~-s----~dg~i~iwd~~~~~~~~~-~~-~~~~------~v~~v~~~~~~~l~~~~--------- 280 (474)
..+. ++|++++++.+ + +-..|+++|+.+++.+.. +. .-+. ....++|..+..++.+.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence 3444 78888877654 2 334699999999887642 22 0000 11334776444444432
Q ss_pred --CCCcEEEEEcccCCCceeeeeeeeeecccccEEEEEEcCCCC-----EEEEEcC---CCcEEEeecCcccc-cceeee
Q 047728 281 --ADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAA-----IVYCGSS---DGLVNFWERELNLS-HGGVLR 349 (474)
Q Consensus 281 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-----~l~~~~~---dg~i~v~d~~~~~~-~~~~~~ 349 (474)
.-..|+.|.+-+.......... ... ...-.....++++. .++..+. ...+.+.|...... ...+..
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~--~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFE--VPK-EYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEE--CCT-TSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred CCCCCEEEEEECCCChHHCeEEec--cCC-CceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 1245777766543222111111 111 12223455566655 2333321 23455556542111 112222
Q ss_pred ecceeeEEEEecCCEEEEE----------eCCCcEEEEECCCC--------ceEEEEeecCCccceEEEEEeeCCccccc
Q 047728 350 GHKLAILCLVTAGNLVFSG----------SADMSICIWRRKEN--------EHICLSMLTGHSGPVKCLAVEKDDESLSR 411 (474)
Q Consensus 350 ~~~~~v~~~~~~~~~l~sg----------s~dg~i~iwd~~~~--------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 411 (474)
.....+ .....+.+++.. ...+.|...|+.+. +...+ ........+..+.|..+.
T Consensus 289 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~----- 361 (711)
T 4hvt_A 289 PSDATL-QGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKIL-FTPTANEVFNFISTTKDR----- 361 (711)
T ss_dssp CTTCEE-EEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEE-ECCCTTEEEEEEEECSSC-----
T ss_pred CCcceE-eeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEE-ECCCCCCeEEEEEEECCE-----
Confidence 222221 123344444422 24678899998653 11111 122234567788888763
Q ss_pred cceEEEEEecCCCc--EEEEEccCC
Q 047728 412 EKRWILYSGSLDKS--VKMWRVSEQ 434 (474)
Q Consensus 412 ~~~~~l~s~s~Dg~--i~vw~~~~~ 434 (474)
++++...++. |.++++.++
T Consensus 362 ----l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 362 ----VFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp ----EEEEEEETTEEEEEEECEETT
T ss_pred ----EEEEEEECCEEEEEEEECCCC
Confidence 6777777775 556665544
No 382
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=36.36 E-value=1.2e+02 Score=21.92 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=12.6
Q ss_pred EEEecCCCeEEEeeCCCcEEEEEcc
Q 047728 267 SIVAGFDGLVFTGSADGTVKVWRRE 291 (474)
Q Consensus 267 ~v~~~~~~~l~~~~~dg~i~iwd~~ 291 (474)
.+.+..+|-|+.-..++.+ +|...
T Consensus 60 ~l~l~~dGNLVl~d~~~~~-iW~S~ 83 (113)
T 3mez_B 60 FMRLGHSGELDITDDRLNT-VFVSN 83 (113)
T ss_dssp EEEECTTSCEEEECTTSCE-EEECS
T ss_pred EEEEeCCCcEEEECCCCCE-EEECC
Confidence 4566667744443444544 67543
No 383
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=36.32 E-value=2.5e+02 Score=25.64 Aligned_cols=119 Identities=10% Similarity=0.154 Sum_probs=61.1
Q ss_pred CCeeEEEec---CC----CCEEEEEE-CCCcEEEEEcCCcceeeeeeec------------------CcceeEEEecCC-
Q 047728 221 DAISSLSMS---ED----QNLLYSAS-WDKTFKVWRTSDYKCLESVIAH------------------DDAVNSIVAGFD- 273 (474)
Q Consensus 221 ~~V~~l~~~---~~----~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~v~~~~~- 273 (474)
..+..+++. +. +.+++.+. ...-|.++|+.+++.-+.+..+ ...+..|+.+|+
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~ 231 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRD 231 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCc
Confidence 345666665 21 34444443 4577999999987765544210 135666777776
Q ss_pred ---C-eEE-EeeCCCcEEEEEcccCCCceeeeeeeeeeccc---ccEEEEEEc-CCCCEEEEEcCCCcEEEeecCc
Q 047728 274 ---G-LVF-TGSADGTVKVWRRELQGKGTKHFFSQTLLKQE---CAVTALAIS-PDAAIVYCGSSDGLVNFWEREL 340 (474)
Q Consensus 274 ---~-~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~v~~l~~~-~~~~~l~~~~~dg~i~v~d~~~ 340 (474)
+ .|. ..-....+.--..+........... ...+.. ..-..++++ .+|.++++--....|..|+..+
T Consensus 232 ~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v-~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 232 SEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNP-ELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp TTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCC-EEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred CCCCeEEEEEECCCCcEEEEEHHHhhCcchhhce-EEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 3 333 3323223333332111110000001 111111 334456776 5777777777888899999876
No 384
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=32.59 E-value=2.9e+02 Score=25.13 Aligned_cols=120 Identities=14% Similarity=0.053 Sum_probs=68.6
Q ss_pred ccCCeeEEEecCCCCEEEEEECCCcEEEEEcC---------Ccceeeee-e-ecCcceeEEEec----CCCeEEEeeCCC
Q 047728 219 HFDAISSLSMSEDQNLLYSASWDKTFKVWRTS---------DYKCLESV-I-AHDDAVNSIVAG----FDGLVFTGSADG 283 (474)
Q Consensus 219 h~~~V~~l~~~~~~~~l~s~s~dg~i~iwd~~---------~~~~~~~~-~-~~~~~v~~v~~~----~~~~l~~~~~dg 283 (474)
..+.+..+........|+..+..|.++-+... .|..+..+ . .....|.++... ++..++.++..|
T Consensus 44 e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G 123 (370)
T 3l6v_A 44 EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNG 123 (370)
T ss_dssp CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCC
Confidence 34556666666666778778888887766542 12222211 1 123455555433 233899999999
Q ss_pred cEEEEEcccCCCce-eeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCcEEEeecC
Q 047728 284 TVKVWRRELQGKGT-KHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGLVNFWERE 339 (474)
Q Consensus 284 ~i~iwd~~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~ 339 (474)
.++...+..-.... .......+.. ...+..+........++..+.+|.+..++..
T Consensus 124 ~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 124 TVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp EEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGG
T ss_pred eEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEcc
Confidence 99998865432211 1111222323 3445555554555677778888888777643
No 385
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=32.13 E-value=3e+02 Score=25.18 Aligned_cols=163 Identities=7% Similarity=0.061 Sum_probs=85.2
Q ss_pred cEEEEEcCCc--ceeeeeeec------CcceeEEEec---C-----CCeE-EEeeCCCcEEEEEcccCCCceeee----e
Q 047728 243 TFKVWRTSDY--KCLESVIAH------DDAVNSIVAG---F-----DGLV-FTGSADGTVKVWRRELQGKGTKHF----F 301 (474)
Q Consensus 243 ~i~iwd~~~~--~~~~~~~~~------~~~v~~v~~~---~-----~~~l-~~~~~dg~i~iwd~~~~~~~~~~~----~ 301 (474)
.|.+||+.+. +.++.+.-. ...+..+++. + ++++ ++=.....|.++|+..+..-.... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 777766432 3456777766 2 2233 333456789999987543211000 0
Q ss_pred ----eeeeec----ccccEEEEEEcCC----CCEEEEEcCCCcEEEeecC-----cccccce-eeeecc-----eeeEEE
Q 047728 302 ----SQTLLK----QECAVTALAISPD----AAIVYCGSSDGLVNFWERE-----LNLSHGG-VLRGHK-----LAILCL 358 (474)
Q Consensus 302 ----~~~~~~----~~~~v~~l~~~~~----~~~l~~~~~dg~i~v~d~~-----~~~~~~~-~~~~~~-----~~v~~~ 358 (474)
.....+ -...+..|+++|+ ++.|+-....+. ++|.+. ....... ...+.+ ....++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 000011 1357899999997 677776655442 333322 1111101 111222 122444
Q ss_pred E-ecCCEEEEEeCCCcEEEEECCC-----CceEEEEeecCCccceEEEEEeeCCc
Q 047728 359 V-TAGNLVFSGSADMSICIWRRKE-----NEHICLSMLTGHSGPVKCLAVEKDDE 407 (474)
Q Consensus 359 ~-~~~~~l~sgs~dg~i~iwd~~~-----~~~~~~~~~~~h~~~v~~l~~~~~~~ 407 (474)
. .+|.++++--..+.|..|+..+ .....+.. ...-..+..+.+..++.
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~-d~~l~~pd~~~i~~~g~ 336 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT-SSRFVFGTDISVDSKGG 336 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE-CTTCCSEEEEEECTTSC
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE-CCCccccCeEEECCCCe
Confidence 3 3566777777888999999876 12111221 11233466666665554
No 386
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=31.67 E-value=1.7e+02 Score=27.95 Aligned_cols=61 Identities=20% Similarity=0.364 Sum_probs=37.0
Q ss_pred eEEEeeCCCcEEEEEcccCCCc--eeeeeee--eeecccccEEEEEEcCCCCEEEEEcCCCcEEE
Q 047728 275 LVFTGSADGTVKVWRRELQGKG--TKHFFSQ--TLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335 (474)
Q Consensus 275 ~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v 335 (474)
.++.|+.+|.|.=.-+...... ....... .......+|..+.++++...|++++.++.++|
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 7889999998753332211110 0011111 12224578999999999999999998886665
No 387
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=31.30 E-value=3.1e+02 Score=25.11 Aligned_cols=248 Identities=14% Similarity=0.096 Sum_probs=126.8
Q ss_pred cCEEEEEecCCEEEEEeCCCeEEEEecCCCCcceeeeecccCccceeeeeecCCCCeEEEeeeccceeeeccCCeeEEEe
Q 047728 149 GLVKAIVISNEKIFSGHQDGKIRVWKVSSKDASIHKRVGTLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSM 228 (474)
Q Consensus 149 ~~V~~i~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 228 (474)
..|..|+......+.-..||.|..|-......+-...... ... ..| ..+ .-...|..|+.
T Consensus 59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~---~~~-----~~P---~~v---------~l~~~i~~va~ 118 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVE---GSE-----MVP---GKV---------ELQEKVVQVSA 118 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCST---TGG-----GSC---EEC---------CCCSCEEEEEE
T ss_pred CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCC---ccc-----cCC---eEe---------cCCCcEEEEec
Confidence 5677787777777888899999999765432211000000 000 000 000 01235666655
Q ss_pred cCCCCEEEEEECCCcEEEEEc--CC-cce-----------eeeeeecCcceeEEEecCCCeEEEeeCCCcEEEEEcccCC
Q 047728 229 SEDQNLLYSASWDKTFKVWRT--SD-YKC-----------LESVIAHDDAVNSIVAGFDGLVFTGSADGTVKVWRRELQG 294 (474)
Q Consensus 229 ~~~~~~l~s~s~dg~i~iwd~--~~-~~~-----------~~~~~~~~~~v~~v~~~~~~~l~~~~~dg~i~iwd~~~~~ 294 (474)
. ..+.+.-..||.|+.|-. .. +++ ...+ .....|..|+.... ..++-..||.|..|-.....
T Consensus 119 G--~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~G~~-hs~alt~~G~v~~wG~n~~G 194 (413)
T 1a12_A 119 G--DSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASGND-HLVMLTADGDLYTLGCGEQG 194 (413)
T ss_dssp C--SSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEECSS-EEEEEETTSCEEEEECCTTS
T ss_pred C--CCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe-cCCCCEEEEEecCc-eEEEEcCCCCEEEeeCCCCC
Confidence 4 345556677888998864 11 111 0011 12345666665433 44555689999999654322
Q ss_pred Ccee-----------------eeeeeeeec-----ccccEEEEEEcCCCCEEEEEcCCCcEEEeecCcccccc-------
Q 047728 295 KGTK-----------------HFFSQTLLK-----QECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSHG------- 345 (474)
Q Consensus 295 ~~~~-----------------~~~~~~~~~-----~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~------- 345 (474)
+... ..+...... ....|..++.... ..++-..+|.|+.|-......+.
T Consensus 195 qLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~--hs~alt~~G~v~~wG~n~~gqLG~~~~~~~ 272 (413)
T 1a12_A 195 QLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY--FTFAISHEGHVYGFGLSNYHQLGTPGTESC 272 (413)
T ss_dssp TTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETT--EEEEEETTCCEEEEECCTTSTTSCSSCSCE
T ss_pred ccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCC--EEEEEeCCCCEEEEeCCCCcCCCCCCCCcc
Confidence 1100 000000000 2345666666543 33444578999999654321110
Q ss_pred ---eee---eecceeeEEEEecCCEEEEEeCCCcEEEEECCCC----------ceEEEEeecCCccceEEEEEeeCCccc
Q 047728 346 ---GVL---RGHKLAILCLVTAGNLVFSGSADMSICIWRRKEN----------EHICLSMLTGHSGPVKCLAVEKDDESL 409 (474)
Q Consensus 346 ---~~~---~~~~~~v~~~~~~~~~l~sgs~dg~i~iwd~~~~----------~~~~~~~~~~h~~~v~~l~~~~~~~~~ 409 (474)
..+ ......+..++......++-..||.|+.|-.... .......+.. -..|..|+.-..
T Consensus 273 ~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~G~~---- 347 (413)
T 1a12_A 273 FIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVACGAS---- 347 (413)
T ss_dssp EEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEECSS----
T ss_pred cccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEECcc----
Confidence 000 0111236677776777777788999999975321 1111111221 125666665443
Q ss_pred cccceEEEEEecCCCcEEEEEccC
Q 047728 410 SREKRWILYSGSLDKSVKMWRVSE 433 (474)
Q Consensus 410 ~~~~~~~l~s~s~Dg~i~vw~~~~ 433 (474)
..+.-..||.|..|-...
T Consensus 348 ------hs~alt~~G~v~~wG~n~ 365 (413)
T 1a12_A 348 ------VGYAVTKDGRVFAWGMGT 365 (413)
T ss_dssp ------EEEEEETTSCEEEEECCT
T ss_pred ------eEEEEeCCCCEEEecCCC
Confidence 334445789999997654
No 388
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=29.05 E-value=4.6e+02 Score=26.37 Aligned_cols=101 Identities=8% Similarity=0.019 Sum_probs=51.2
Q ss_pred CCCcEEEEEcccCCCc---eeeeeeeeeecccccEEEEEEcCCCCEEEEEcCCCc--EEEeecCccc-ccce-eeee--c
Q 047728 281 ADGTVKVWRRELQGKG---TKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL--VNFWERELNL-SHGG-VLRG--H 351 (474)
Q Consensus 281 ~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~--i~v~d~~~~~-~~~~-~~~~--~ 351 (474)
..+.|.+.|+...... ...............+..+.+..+ .++++...++. +.++|+.++. .... +... .
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~ 396 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQN 396 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTT
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCe
Confidence 4677889998754211 000001112233456788888865 56666767764 6667765442 1212 1111 1
Q ss_pred ceeeEEEEecC-CEEEEEeC---CCcEEEEECCCCc
Q 047728 352 KLAILCLVTAG-NLVFSGSA---DMSICIWRRKENE 383 (474)
Q Consensus 352 ~~~v~~~~~~~-~~l~sgs~---dg~i~iwd~~~~~ 383 (474)
......+.+++ .++++.+. -+.+..+|+. ++
T Consensus 397 ~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 397 AIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE 431 (711)
T ss_dssp CEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred EEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc
Confidence 12223333444 45554443 3667777776 44
No 389
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=24.82 E-value=4.1e+02 Score=26.47 Aligned_cols=61 Identities=21% Similarity=0.400 Sum_probs=38.7
Q ss_pred eEEEeeCCCcEE-EEEcccCCC-ceeeee--eeeeecccccEEEEEEcCCCCEEEEEcCCCcEEE
Q 047728 275 LVFTGSADGTVK-VWRRELQGK-GTKHFF--SQTLLKQECAVTALAISPDAAIVYCGSSDGLVNF 335 (474)
Q Consensus 275 ~l~~~~~dg~i~-iwd~~~~~~-~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v 335 (474)
.++.|+.+|.|. +.-...... ...... .........+|..|.++++...|++++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 688999999875 332221111 111111 1223345678999999999999999999887766
No 390
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=22.75 E-value=3.1e+02 Score=26.81 Aligned_cols=20 Identities=35% Similarity=0.783 Sum_probs=16.6
Q ss_pred cccEEEEEEcCCCCEEEEEc
Q 047728 309 ECAVTALAISPDAAIVYCGS 328 (474)
Q Consensus 309 ~~~v~~l~~~~~~~~l~~~~ 328 (474)
...++.++|+||++.|+++-
T Consensus 530 ~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 530 GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp TCEEEEEEECTTSSEEEEEE
T ss_pred CccccCCEECCCCCEEEEEE
Confidence 46789999999999888763
No 391
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=21.76 E-value=2.8e+02 Score=27.08 Aligned_cols=58 Identities=7% Similarity=0.157 Sum_probs=37.9
Q ss_pred CEEEEEeCCCcEEEEECCCCc----eEEEEeec--CCccceEEEEEeeCCccccccceEEEEEecCCCcEEE
Q 047728 363 NLVFSGSADMSICIWRRKENE----HICLSMLT--GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM 428 (474)
Q Consensus 363 ~~l~sgs~dg~i~iwd~~~~~----~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v 428 (474)
..++.|+.+|.|.-.-+.... ...+..+. ....+|..+.++++.. .|+.++.++.++|
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~--------~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERR--------KLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTT--------EEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCC--------EEEEEecceEEEc
Confidence 478889999988644332211 12222232 3457899999999887 7888887766555
No 392
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=21.66 E-value=1.8e+02 Score=29.15 Aligned_cols=61 Identities=20% Similarity=0.329 Sum_probs=37.9
Q ss_pred eEEEeeCCCcEEEEEcccCCCceeeeeeeeeecccccE-EEEEEcCCCCEEEEEcCCCcEEE
Q 047728 275 LVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAV-TALAISPDAAIVYCGSSDGLVNF 335 (474)
Q Consensus 275 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-~~l~~~~~~~~l~~~~~dg~i~v 335 (474)
.++.|+.+|.|.-.-+....................+| ..+.++++...|++++.++.+++
T Consensus 414 VlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 414 VVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp EEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred EEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 78889999998754443211111111111122244566 68999999999999988877666
No 393
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=21.12 E-value=5.3e+02 Score=25.82 Aligned_cols=148 Identities=9% Similarity=0.019 Sum_probs=72.3
Q ss_pred cCCCCEEEEEECCCcEEEEEcCCccee--e--eeeecCcceeEEE-ecCCCeEEEeeCCCcEEEE---EcccCCCceeee
Q 047728 229 SEDQNLLYSASWDKTFKVWRTSDYKCL--E--SVIAHDDAVNSIV-AGFDGLVFTGSADGTVKVW---RRELQGKGTKHF 300 (474)
Q Consensus 229 ~~~~~~l~s~s~dg~i~iwd~~~~~~~--~--~~~~~~~~v~~v~-~~~~~~l~~~~~dg~i~iw---d~~~~~~~~~~~ 300 (474)
-++....++-+.+|.|+-- .+.-+ . .++. .+.+..+. .+....++.-+..|.+.-. ++.... .....
T Consensus 469 i~~e~v~v~ls~~GyiKr~---~g~~~~~~~~~~k~-~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~~-~~G~~ 543 (716)
T 1zvu_A 469 LPSEPVTIVLSQMGWVRSA---KGHDIDAPGLNYKA-GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR-GQGEP 543 (716)
T ss_dssp SCCCCCCEEEETTTEEEEC---CC----------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCCC----CB
T ss_pred cCCceEEEEEecCCeEecc---CCCCcCccccccCC-CCeEEEEEEecCCCEEEEEecCCcEEEEEeeeccccc-ccCee
Confidence 3466777888899998752 11111 1 1122 22333332 2222356666677765433 332211 00000
Q ss_pred eeee-eecccccEEEEEEcCCCCEEEEEcCCCcEEEeecCccccc------ceeeeecceee-EEEE-ecCCEEEEEeCC
Q 047728 301 FSQT-LLKQECAVTALAISPDAAIVYCGSSDGLVNFWERELNLSH------GGVLRGHKLAI-LCLV-TAGNLVFSGSAD 371 (474)
Q Consensus 301 ~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~v~d~~~~~~~------~~~~~~~~~~v-~~~~-~~~~~l~sgs~d 371 (474)
.... .......|..+....+..+++.++..|.++...+..-... ...+.....-+ .... ..+..++..+.+
T Consensus 544 i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~ 623 (716)
T 1zvu_A 544 LTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 623 (716)
T ss_dssp STTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETT
T ss_pred HHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCC
Confidence 0001 1123445666554456778888999999998776432111 00111111111 1222 235688899999
Q ss_pred CcEEEEECCC
Q 047728 372 MSICIWRRKE 381 (474)
Q Consensus 372 g~i~iwd~~~ 381 (474)
|....|....
T Consensus 624 g~~lrf~~~~ 633 (716)
T 1zvu_A 624 GRMLMFPVSD 633 (716)
T ss_dssp SEEEEEESTT
T ss_pred CeEEEEEHHH
Confidence 9999998754
No 394
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=20.98 E-value=2.3e+02 Score=20.06 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=11.5
Q ss_pred EEEecCCCeEEEeeCCCcEEEEEc
Q 047728 267 SIVAGFDGLVFTGSADGTVKVWRR 290 (474)
Q Consensus 267 ~v~~~~~~~l~~~~~dg~i~iwd~ 290 (474)
.+.+..||-|+.-..++. .+|..
T Consensus 54 ~L~l~~dGnLvL~d~~~~-~vWss 76 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDSSGR-SLWAS 76 (105)
T ss_dssp EEEECTTSCEEEECTTCC-EEEEC
T ss_pred EEEEeCCccEEEECCCcE-EEEEe
Confidence 456666664443344443 35653
No 395
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.34 E-value=2.7e+02 Score=26.59 Aligned_cols=58 Identities=14% Similarity=0.268 Sum_probs=37.5
Q ss_pred CEEEEEeCCCcEEEEECC-CCc-----eEEEEeec--CCccceEEEEEeeCCccccccceEEEEEecCCCcEEE
Q 047728 363 NLVFSGSADMSICIWRRK-ENE-----HICLSMLT--GHSGPVKCLAVEKDDESLSREKRWILYSGSLDKSVKM 428 (474)
Q Consensus 363 ~~l~sgs~dg~i~iwd~~-~~~-----~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~~~~l~s~s~Dg~i~v 428 (474)
..++.|+.+|.|.=.-+. ... ...+..+. ....+|..|.++++.. .|+.++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~--------~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQ--------QLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTT--------EEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCC--------EEEEEECCeEEEE
Confidence 468889999987644332 211 11122232 2357899999999988 8999988876665
Done!