Query 047730
Match_columns 673
No_of_seqs 136 out of 1134
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:34:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 2E-123 4E-128 1006.4 33.6 592 36-665 63-732 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 1E-118 3E-123 1017.8 47.6 586 37-662 17-679 (681)
3 PF03169 OPT: OPT oligopeptide 100.0 5E-101 1E-105 888.4 52.5 582 43-657 1-623 (624)
4 TIGR00728 OPT_sfam oligopeptid 100.0 7E-101 2E-105 888.4 41.6 584 36-656 9-650 (654)
5 TIGR00733 putative oligopeptid 100.0 2.8E-80 6.2E-85 699.3 46.6 554 43-658 1-590 (591)
6 COG1297 Predicted membrane pro 100.0 4.3E-66 9.4E-71 556.8 34.1 571 34-661 3-617 (624)
7 TIGR00733 putative oligopeptid 94.7 4.7 0.0001 47.0 22.2 149 498-655 88-266 (591)
8 PF03169 OPT: OPT oligopeptide 89.2 7.7 0.00017 45.7 15.3 28 597-624 217-244 (624)
9 PF06738 DUF1212: Protein of u 59.4 25 0.00055 34.5 6.6 36 5-40 60-100 (193)
10 COG1297 Predicted membrane pro 47.7 1.6E+02 0.0035 34.1 11.0 126 490-624 94-234 (624)
11 TIGR02106 cyd_oper_ybgT cyd op 46.3 26 0.00056 24.0 2.8 18 48-65 5-22 (30)
12 PF08173 YbgT_YccB: Membrane b 44.1 30 0.00065 23.3 2.8 18 48-65 5-22 (28)
13 PRK14749 hypothetical protein; 43.9 30 0.00066 23.4 2.8 18 48-65 5-22 (30)
14 PF15176 LRR19-TM: Leucine-ric 41.4 11 0.00025 33.0 0.7 31 643-673 19-49 (102)
15 PF11449 DUF2899: Protein of u 36.1 1.1E+02 0.0025 32.4 7.2 27 498-524 271-297 (298)
16 COG4890 Predicted outer membra 31.0 64 0.0014 22.7 2.8 18 48-65 5-22 (37)
17 COG1291 MotA Flagellar motor c 30.9 46 0.001 34.7 3.3 42 69-117 182-223 (266)
18 PF13829 DUF4191: Domain of un 30.9 1.3E+02 0.0028 30.7 6.3 44 384-430 23-66 (224)
19 PF12270 Cyt_c_ox_IV: Cytochro 29.1 4.9E+02 0.011 24.5 10.8 21 281-301 2-22 (137)
20 TIGR00728 OPT_sfam oligopeptid 25.0 8.5E+02 0.019 28.9 13.0 28 597-624 231-258 (654)
21 KOG1289 Amino acid transporter 23.6 1E+02 0.0022 35.5 4.5 64 46-109 392-455 (550)
22 COG5336 Uncharacterized protei 21.5 1.9E+02 0.0041 26.1 4.8 41 393-435 52-92 (116)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=2e-123 Score=1006.39 Aligned_cols=592 Identities=19% Similarity=0.242 Sum_probs=534.2
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHhhhhc----------CCCCCCC
Q 047730 36 RVPPWTKHMTIRGLIVSLAIGIMYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRTWIKLLHKA----------GIVSTPF 105 (673)
Q Consensus 36 ~~~p~~p~lT~Ra~viG~ll~~l~~~~n~y~~lr~g~~~~~si~~~ils~~~g~~l~~~lp~~----------~lnpgpf 105 (673)
.=||++|++|+|+|++|++.|++++.+||+|++|++..+++++++|++.+|+||+|+|.||+| ++|||||
T Consensus 63 tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~lP~~~~~~~~~~~fslNPGPF 142 (761)
T KOG2262|consen 63 TDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKTLPTWKFGLGGRWSFSLNPGPF 142 (761)
T ss_pred CCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHhCCceeeecCcceEEEeCCCCC
Confidence 346788999999999999999999999999999999999999999999999999999999987 6899999
Q ss_pred CcchhhhhhHhhhhcccccccccccccccchhhhhhhccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhhhccc
Q 047730 106 TRQENTIIQTCATACYSIAVGGGFGSYLLGLNRKTYLQAGVDTPGNNPNSTKEPEIGWMTGFLFVTCFVGLLALVPLRKI 185 (673)
Q Consensus 106 ~~kE~~liq~~asa~~~~~~a~g~~~~i~a~~~l~y~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~llG~~~Ag~lRr~ 185 (673)
|.|||+++++++|++++.+|+ ..|+..+++||++ +.++++++++++++|++|||+||++||+
T Consensus 143 n~KEHvlitIfan~~sg~aYa----t~Ii~~~k~fY~~--------------~l~f~~~~ll~lttQ~lGyGwAGl~Rk~ 204 (761)
T KOG2262|consen 143 NVKEHVLITIFANIGSGTAYA----THIITAQKAFYKR--------------NLSFGYAFLLVLTTQLLGYGWAGLFRKY 204 (761)
T ss_pred cchheeeeehhhhccCcchhh----hHHHHHHHHHHhc--------------cccHHHHHHHHHHHHHhcccHhhhhHhh
Confidence 999999999999998776665 6788889999986 4689999999999999999999999999
Q ss_pred eeecccCcCchhhHHHHHHhhcccCCCchhh-hhHHHHHHHHHHHHHHHHHHH-hhhcc----cccccc-----------
Q 047730 186 MVIDYKLTYPSGTATAVLINGFHSSKGNKMA-KKQVRGFMKHFSFSFLWAFFQ-WFFTG----GDLCGF----------- 248 (673)
Q Consensus 186 lV~p~~l~~P~~la~a~l~~~lh~~~~~~~a-~~r~~~f~~~~~~~fv~~~~~-~i~~~----~~~~~~----------- 248 (673)
+|+|++|.||+.+++++|+|+||++|+++++ .+|+|||+++|.+||+|+||| |+|+. +|+||.
T Consensus 205 lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s~~~~qi~ 284 (761)
T KOG2262|consen 205 LVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWPSSITANQIG 284 (761)
T ss_pred ccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEeccccHHHHHhc
Confidence 9999999999999999999999997655544 899999999999999999999 99996 899985
Q ss_pred cccccccccCCCCceeeecc-cc-cccccccccHHHHHHHHHHHHHHHHHhhhhhhcccCccCCCCCCCCCc--c-----
Q 047730 249 VQFPTFGLKAWKNSFYFDFS-MT-YIGAGMICSHLVNLSLLLGAVLSWGIMWPLISGLKGEWFPKTLPESSM--K----- 319 (673)
Q Consensus 249 ~~~~~~G~~~~~~~~~~dws-~~-~iG~g~l~p~~~~~~~~~G~vl~~~ii~P~~~~~~n~w~~~~~p~~s~--~----- 319 (673)
+...|+|+. ++++||+ ++ |+|+|+.+|+++.+|.++|.++..+++.|++|++ |.|+.+++|+.|. +
T Consensus 285 sg~~GLGi~----~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~-n~~~a~~fPI~Ss~lf~~tG~ 359 (761)
T KOG2262|consen 285 SGLTGLGIG----PFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWT-NTYDAKYFPIFSSSLFDHTGN 359 (761)
T ss_pred ccccccccc----cccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhc-cceecceeceecCcceecCCc
Confidence 233477876 5899999 44 8999999999999999999999999999999997 9999999998763 1
Q ss_pred --------------cchhhH----HHHHH--HHHHHHHHHH----HHHHHHHhHHHHHHHHHhccccCCCCCCCCCCCcc
Q 047730 320 --------------SLNGYK----VFVSI--ALILGDGLYN----FLKVAYFTGKNIQAARTRNNNIHATSDNQNSQSLD 375 (673)
Q Consensus 320 --------------~~~~y~----~~~~~--~~~~~~g~~~----l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d 375 (673)
|.++|+ .|+++ ++.++.+|++ ++|.+++++||+|+++|+..+ +..|
T Consensus 360 sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~~~~~----------k~~D 429 (761)
T KOG2262|consen 360 SYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTKKAFN----------KKMD 429 (761)
T ss_pred EeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHHhccc----------cCCC
Confidence 223465 36665 4556666655 459999999999999988753 2358
Q ss_pred hhhhhhhhhcCCchHHHHHHHHHHHHHHHHHhhhcccc--cchHHHHHHHHHHHHHHHhhhhhheeeeCCcchhhhHHHH
Q 047730 376 DLQRNEIFIRESIPLWLACAGYIIFSIISIIIIPLMFL--QLKWYFVVVAYLLAPILSFCNAYGAGLTDMNMAYNYGKVA 453 (673)
Q Consensus 376 ~~~r~~~~~y~~vp~ww~~~~~vv~~~~~i~~~~~~~~--~lp~~~~lla~~l~~i~~~~~~~v~g~Tg~~p~~~~~~~~ 453 (673)
.|.|+|+ +|||||+|||.+.++++++++++..+++.+ |+|||++++|+++++++.+|.+.++|+||++|+ +|+++
T Consensus 430 iHtrlMk-kYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~G--LNiit 506 (761)
T KOG2262|consen 430 IHTRLMK-KYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTPG--LNIIT 506 (761)
T ss_pred HHHHHHH-HhccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCcc--HHHHH
Confidence 8999999 799999999999999999999999999988 899999999999999999999999999999999 99999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCChhhHHHHHHHHHHHHHhHHHHH-HHHHhhcCCC
Q 047730 454 LFVLAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLLSQAIGTAIGCVVAPLS-FFLFYKAFDV 532 (673)
Q Consensus 454 ~li~g~~~g~p~~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~QliG~ivga~v~~~v-~~l~~~~~~i 532 (673)
|+|.||+. ||+|+|||++|.+|+.+..||.+++||+|+|||||+|||.||.+|++||+++++|+.++ .|++.++.|+
T Consensus 507 E~i~Gy~~--PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~gv~~W~m~~I~~i 584 (761)
T KOG2262|consen 507 EYIIGYIY--PGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNLGVAWWLMYSIPNI 584 (761)
T ss_pred HHHHHhhc--CCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeHHhHHHHHhccccc
Confidence 99999999 88889999999999999999999999999999999999999999999999999999999 5678889999
Q ss_pred CCC--CCccccchHHHHHHHHH-hhhcCCCCCchh---hHHHHHHHHHHH---HHHHHHHHhcccc-chhhchhhHHhhc
Q 047730 533 GHP--DREYKAPYAIVYRNMAI-LGVQGFSALPRH---CLQLCYGFFAFA---IAANLLRDLSPKK-IGKWIPLPMAMAV 602 (673)
Q Consensus 533 ~~~--~~~~~~P~a~~~~~~s~-~g~~G~~~l~~~---~~~~~~~~~~~~---i~~~ll~~~~p~~-~~~~ip~p~~~~~ 602 (673)
|++ ++.||||.+++++++|+ ||++||+|+|++ |..+.|+|++++ ++.|+++|++|++ |.+.+|.|+.++.
T Consensus 585 C~~~~~s~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~fPk~~w~~~i~~pvl~gg 664 (761)
T KOG2262|consen 585 CTTDQNSPWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKFPKKKWIKQINPPVLFGG 664 (761)
T ss_pred ccCCCCCCccCCCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhcchhhhhhccCcceEecc
Confidence 985 46899999999999999 999999999985 766777665544 7889999999986 5777888999988
Q ss_pred ccccch----hhHHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHhhHHHHHHHHHH-HHhcCCCCc
Q 047730 603 PFLVGA----YFAIDMCVGSLIVFVWQKLNKKKADLMIPAVASGLICGDGLWILPSSI-LALAKIRPP 665 (673)
Q Consensus 603 g~~lp~----~~~~~~~iG~~~~~~~~r~~~~~~~ky~~~laAGL~aG~al~giiia~-l~~~gv~~~ 665 (673)
...+|+ ++++++++|.+++++++||++.||+||||+++||||||.+++|+++++ ++..|++.+
T Consensus 665 ~~~mPpat~vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~~~~~~ 732 (761)
T KOG2262|consen 665 TANMPPATAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYPGISLN 732 (761)
T ss_pred cccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheeccCCCccc
Confidence 888886 689999999999999999999999999999999999999999999974 888887654
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=1.2e-118 Score=1017.77 Aligned_cols=586 Identities=18% Similarity=0.229 Sum_probs=520.2
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHhhhhc---------CCCCCCCCc
Q 047730 37 VPPWTKHMTIRGLIVSLAIGIMYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRTWIKLLHKA---------GIVSTPFTR 107 (673)
Q Consensus 37 ~~p~~p~lT~Ra~viG~ll~~l~~~~n~y~~lr~g~~~~~si~~~ils~~~g~~l~~~lp~~---------~lnpgpf~~ 107 (673)
-||++|++|+|+|++|++++++++++|++|++|+|.++.+++++|+++|++||+|+|++|++ +|||||||+
T Consensus 17 DDp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~~~~g~~~~lNPGPF~~ 96 (681)
T TIGR00727 17 DDPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTITIRGRKYNIIPGPFNV 96 (681)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCccccccccceeccCCCCCCh
Confidence 47899999999999999999999999999999999999999999999999999999999986 489999999
Q ss_pred chhhhhhHhhhhcccccccccccccccchhhhhhhccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhhhcccee
Q 047730 108 QENTIIQTCATACYSIAVGGGFGSYLLGLNRKTYLQAGVDTPGNNPNSTKEPEIGWMTGFLFVTCFVGLLALVPLRKIMV 187 (673)
Q Consensus 108 kE~~liq~~asa~~~~~~a~g~~~~i~a~~~l~y~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~llG~~~Ag~lRr~lV 187 (673)
|||+++|+|||++.+.+++ ..++..|++||++ +.++++++++++++|++|+++||++||++|
T Consensus 97 KEh~liti~a~~~~~~~y~----~~~i~~~~~fy~~--------------~~~~g~~il~~lstq~~G~g~Ag~lRr~lV 158 (681)
T TIGR00727 97 KEHMFITLMYAVSFGAAYT----TDIILAQKLFYKS--------------AFGFGYQFLLSLSTQFIGFGFAGILRRFVV 158 (681)
T ss_pred hcceeeeeeeehhccHHHH----HHHHHHHHHHhCC--------------CCCHHHHHHHHHHHHHHHHHHHHHhhceEe
Confidence 9999999999999776654 4566668889975 358999999999999999999999999999
Q ss_pred ecccCcCchhhHHHHHHhhcccCCCchh---hhhHHHHHHHHHHHHHHHHHHH-hhhcc----ccccccc----------
Q 047730 188 IDYKLTYPSGTATAVLINGFHSSKGNKM---AKKQVRGFMKHFSFSFLWAFFQ-WFFTG----GDLCGFV---------- 249 (673)
Q Consensus 188 ~p~~l~~P~~la~a~l~~~lh~~~~~~~---a~~r~~~f~~~~~~~fv~~~~~-~i~~~----~~~~~~~---------- 249 (673)
+|++|+||+++++++|+|+||++++++. .++|+|+|+++|.++|+|+|+| |+||. +|+||..
T Consensus 159 ~p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~i~ 238 (681)
T TIGR00727 159 YPARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQIF 238 (681)
T ss_pred ccccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhhhh
Confidence 9999999999999999999998654322 2589999999999999999999 99996 8999853
Q ss_pred -ccccccccCCCCc-eeeecccc--cccccccccHHHHHHHHHHHHHHHHHhhhhhhcccCccCCCCCCCCCc--c----
Q 047730 250 -QFPTFGLKAWKNS-FYFDFSMT--YIGAGMICSHLVNLSLLLGAVLSWGIMWPLISGLKGEWFPKTLPESSM--K---- 319 (673)
Q Consensus 250 -~~~~~G~~~~~~~-~~~dws~~--~iG~g~l~p~~~~~~~~~G~vl~~~ii~P~~~~~~n~w~~~~~p~~s~--~---- 319 (673)
...|+|++ + +|||||.. +.|+|+++|+++++|+++|.++++++++|++||+ |.|+++++|++|. +
T Consensus 239 g~~~GlGl~----p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~-N~w~~~~lPi~s~~~fd~~G 313 (681)
T TIGR00727 239 GGSTGLGIN----PISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYS-NTWYCQYLPISSNGLYDNFG 313 (681)
T ss_pred ccccCCCcC----CcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccccCCccchhhhcCC
Confidence 23467776 5 89999953 5789999999999999999999999999999996 9999999999874 2
Q ss_pred ---------------cchhhH----HHHHHHHHHH--HHHH----HHHHHHHHhHHHHHHHHHhccccCCCCCCCCCCCc
Q 047730 320 ---------------SLNGYK----VFVSIALILG--DGLY----NFLKVAYFTGKNIQAARTRNNNIHATSDNQNSQSL 374 (673)
Q Consensus 320 ---------------~~~~y~----~~~~~~~~~~--~g~~----~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 374 (673)
|.++|+ .|++++..+. .+++ .++|.+++|+|++++++|+. +.+
T Consensus 314 ~~Y~vs~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~~~~~~------------~~~ 381 (681)
T TIGR00727 314 HSYNVTEILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFNALKDD------------DYP 381 (681)
T ss_pred CccccceeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC------------CCC
Confidence 234466 4666654433 3334 34699999999999988742 245
Q ss_pred chhhhhhhhhcCCchHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHhhhhhheeeeCCcchhhhHHHHH
Q 047730 375 DDLQRNEIFIRESIPLWLACAGYIIFSIISIIIIPLMFLQLKWYFVVVAYLLAPILSFCNAYGAGLTDMNMAYNYGKVAL 454 (673)
Q Consensus 375 d~~~r~~~~~y~~vp~ww~~~~~vv~~~~~i~~~~~~~~~lp~~~~lla~~l~~i~~~~~~~v~g~Tg~~p~~~~~~~~~ 454 (673)
|+|.|+|+ +|||||+|||++++++++++++++++.+++++|||++++++++++++.+|.+.++|+||+++. +|+++|
T Consensus 382 D~h~rlM~-~Y~evP~WWy~~~l~is~~~~~~~v~~~~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~--ln~l~e 458 (681)
T TIGR00727 382 DPHSNLMK-AYKEVPDWWYLAVFLGFFGMGIATVEHWPTETPVWGLFVCLIFNFVFLIPTTILQATTNISFG--LNVLTE 458 (681)
T ss_pred ChhHHHhh-cCCCCcHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhhhheEeecCCccc--hhHHHH
Confidence 88999998 899999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCChhhHHHHHHHHHHHHHhHHHHHH-HHHhhcCCCC
Q 047730 455 FVLAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLLSQAIGTAIGCVVAPLSF-FLFYKAFDVG 533 (673)
Q Consensus 455 li~g~~~g~p~~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~QliG~ivga~v~~~v~-~l~~~~~~i~ 533 (673)
+|.|++. ||+++|||+++++++++..||.+++||||+|||+|+|||+||++|++|+++|++|+++++ +++.++.|+|
T Consensus 459 li~Gy~~--PG~p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~l~~i~~~c 536 (681)
T TIGR00727 459 FIVGYAL--PGRPLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWAIGNIDNFC 536 (681)
T ss_pred HHhhhcc--CCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 9999999 888899999999999999999999999999999999999999999999999999999996 5677889999
Q ss_pred CCC--CccccchHHHHHHHHH-hhhcCCCCCchh---hHHHHHHHHH---HHHHHHHHHHhccccchhhchhhHHhhc-c
Q 047730 534 HPD--REYKAPYAIVYRNMAI-LGVQGFSALPRH---CLQLCYGFFA---FAIAANLLRDLSPKKIGKWIPLPMAMAV-P 603 (673)
Q Consensus 534 ~~~--~~~~~P~a~~~~~~s~-~g~~G~~~l~~~---~~~~~~~~~~---~~i~~~ll~~~~p~~~~~~ip~p~~~~~-g 603 (673)
+|+ ++|+||.+++++++|+ ||++||+|+|++ |..+.+++++ ++++.++++|++||++.|++|+|+.++. |
T Consensus 537 ~~~~~~~ftcp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P~~~~~~~n~pv~~~~~g 616 (681)
T TIGR00727 537 TADQNAKYTCPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWPKFYPRYLDWPMLFVGTG 616 (681)
T ss_pred CCCCCCCccCCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcchhhhhhCCccHHHhhcc
Confidence 975 7999999999999999 999999999973 6666666654 4478999999999998889999999987 5
Q ss_pred cccch---hhHHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHhhHHHHHHHHHH-HHhcCC
Q 047730 604 FLVGA---YFAIDMCVGSLIVFVWQKLNKKKADLMIPAVASGLICGDGLWILPSSI-LALAKI 662 (673)
Q Consensus 604 ~~lp~---~~~~~~~iG~~~~~~~~r~~~~~~~ky~~~laAGL~aG~al~giiia~-l~~~gv 662 (673)
+..|. ++..+.++|.++++++|||+++||+||||+++||||+|+++++++++. +++.|+
T Consensus 617 ~~~~a~~~n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iiff~v~~~~~ 679 (681)
T TIGR00727 617 YIPPATPYNYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFFCLQLKDT 679 (681)
T ss_pred ccCCcchhhHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHheeEEEeCCC
Confidence 44443 366778899999999999999999999999999999999999999963 666654
No 3
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=4.6e-101 Score=888.39 Aligned_cols=582 Identities=28% Similarity=0.420 Sum_probs=493.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcchhhhhhHhhhhccc
Q 047730 43 HMTIRGLIVSLAIGIMYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRTWIKLLHKAGIVSTPFTRQENTIIQTCATACYS 122 (673)
Q Consensus 43 ~lT~Ra~viG~ll~~l~~~~n~y~~lr~g~~~~~si~~~ils~~~g~~l~~~lp~~~lnpgpf~~kE~~liq~~asa~~~ 122 (673)
|+|+|++++|++++++++++|+|+++|+|+++.+++++|+++|+++|.++|...+.++||||||+||||++|++||++++
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~~~~~~ln~gp~~~kE~~~vq~~asa~~~ 80 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARIGWRFSLNPGPFTIKENNLVQTMASAAGG 80 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhhccccccCCCCCCHHHHHHHHHHHHHhhh
Confidence 68999999999999999999999999999999999999999999999999977778999999999999999999999988
Q ss_pred ccccccccccccchhhhhhhccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhhhccceeecccCcCchhhHHHH
Q 047730 123 IAVGGGFGSYLLGLNRKTYLQAGVDTPGNNPNSTKEPEIGWMTGFLFVTCFVGLLALVPLRKIMVIDYKLTYPSGTATAV 202 (673)
Q Consensus 123 ~~~a~g~~~~i~a~~~l~y~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~llG~~~Ag~lRr~lV~p~~l~~P~~la~a~ 202 (673)
.+++++++..+|++. ||+. +.++++++++++++|++|+++|+|+||++|+|++|+||+++|+++
T Consensus 81 ~~~a~~~i~~ipa~~--~~~~--------------~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~ 144 (624)
T PF03169_consen 81 MAYAAGFIAAIPALL--FLGQ--------------PFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAE 144 (624)
T ss_pred hhhhhhHHHHHHHHH--Hhcc--------------chhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHH
Confidence 777788888888754 4542 357889999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHH-hhhcc----ccccccccccccc-ccCCCCceeeecccccccccc
Q 047730 203 LINGFHSSKGNKMAKKQVRGFMKHFSFSFLWAFFQ-WFFTG----GDLCGFVQFPTFG-LKAWKNSFYFDFSMTYIGAGM 276 (673)
Q Consensus 203 l~~~lh~~~~~~~a~~r~~~f~~~~~~~fv~~~~~-~i~~~----~~~~~~~~~~~~G-~~~~~~~~~~dws~~~iG~g~ 276 (673)
++++||++++++.+++|+|+|++++.++++|+|+| |+++. +|.||.......+ ...+.+.+++|||++++|+|+
T Consensus 145 ~i~alh~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~dws~~~~g~g~ 224 (624)
T PF03169_consen 145 LINALHSGGGWREAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWSFSFDWSPILIGSGL 224 (624)
T ss_pred HHHHhccCccchhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccceeeEeecHHhcCCCe
Confidence 99999996655678899999999999999999998 78775 7788764332222 222345699999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhhhhcccCccCCCCCCCCCc--cc-------chhhHHHHHHHHHHHHHHHHH------
Q 047730 277 ICSHLVNLSLLLGAVLSWGIMWPLISGLKGEWFPKTLPESSM--KS-------LNGYKVFVSIALILGDGLYNF------ 341 (673)
Q Consensus 277 l~p~~~~~~~~~G~vl~~~ii~P~~~~~~n~w~~~~~p~~s~--~~-------~~~y~~~~~~~~~~~~g~~~l------ 341 (673)
++|+++++|+++|++++|+++.|++|+++|.|.+.++|++|. +| ..+|.+|.+.++++..+...+
T Consensus 225 i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~ 304 (624)
T PF03169_consen 225 IVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGSSDGTLNWTKYIGYGPMYGSGLFALSYGWSF 304 (624)
T ss_pred eccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCccccccCHHHHHHHHHHHHhHHHHHhhcccc
Confidence 999999999999999999999999998768899999997663 22 224778999998888765444
Q ss_pred -------HHHHHHhHHHHHHHHHhccccCCCCCCCCCCCcchhhhhhhhhcCCchHHHHHHHHHHHHHHHHHhhhccc--
Q 047730 342 -------LKVAYFTGKNIQAARTRNNNIHATSDNQNSQSLDDLQRNEIFIRESIPLWLACAGYIIFSIISIIIIPLMF-- 412 (673)
Q Consensus 342 -------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~r~~~~~y~~vp~ww~~~~~vv~~~~~i~~~~~~~-- 412 (673)
+|.+++++|++++++++.+++. ++.+++++|+|++.|+ +|+|+|+|||+.++++++++++++++.++
T Consensus 305 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~-~~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~ 380 (624)
T PF03169_consen 305 AALTASIVHAILWHWKAIWQAFKQSKSSQ---RSSKSSEDDPHYRLMR-TYKEVPMWWYLAGLVVSFVLAIIVVEAWFGQ 380 (624)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhcccc---cccccccCCchhhhhh-hcCCcchHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4777888999988775543211 1122344566888887 99999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHhhhhhheeeeCCcchhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047730 413 LQLKWYFVVVAYLLAPILSFCNAYGAGLTDMNMAYNYGKVALFVLAALSGKENGVVAGLVGCGLIKSIVSISSDLMHDFK 492 (673)
Q Consensus 413 ~~lp~~~~lla~~l~~i~~~~~~~v~g~Tg~~p~~~~~~~~~li~g~~~g~p~~~~a~l~~~~~~~~~~~qa~~~~~DlK 492 (673)
+++|+|+.++++++++++++|.++++|+||+||.+++++++|+++|++. |+++++||+++++++++++||.|++||||
T Consensus 381 ~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~--pg~~~a~l~~~~~~~~~~~qa~~~~~DlK 458 (624)
T PF03169_consen 381 TQMPWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLL--PGNPIANLLFGGYGYAAASQAGDLMQDLK 458 (624)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999998 88899999999999999999999999999
Q ss_pred hhhccCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCC---CCccccchHHHHHHHHHhhhcCCCC-CchhhHHH
Q 047730 493 TGHLTLTSPRSMLLSQAIGTAIGCVVAPLSFFLFYKAFDVGHP---DREYKAPYAIVYRNMAILGVQGFSA-LPRHCLQL 568 (673)
Q Consensus 493 ~G~y~~~pPr~~f~~QliG~ivga~v~~~v~~l~~~~~~i~~~---~~~~~~P~a~~~~~~s~~g~~G~~~-l~~~~~~~ 568 (673)
+|||+|+|||+||++|++|+++|+++++++++++.+.|....+ +..+++|++..|.+++ |++.|+.+ .+++ .+
T Consensus 459 ~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~~~~~~~~~~~~~~~~~~ap~a~~~aav~-~g~~~~~~~~~~~--~~ 535 (624)
T PF03169_consen 459 TGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLLNQAYPCGPDQGDSFSCPAPQAFAWAAVA-WGLIGPQRGLPYS--AL 535 (624)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCcCcchHHHHHHHHH-HHhcCCcccchHH--HH
Confidence 9999999999999999999999999999999999554443322 2344445555554442 88888743 3333 33
Q ss_pred HHHH---HHHHHHHHHHHHhccccchhhchhhHHhh----cccccchhhHHHHHHHHHHHHHHHhhchhhhchhhHHhhh
Q 047730 569 CYGF---FAFAIAANLLRDLSPKKIGKWIPLPMAMA----VPFLVGAYFAIDMCVGSLIVFVWQKLNKKKADLMIPAVAS 641 (673)
Q Consensus 569 ~~~~---~~~~i~~~ll~~~~p~~~~~~ip~p~~~~----~g~~lp~~~~~~~~iG~~~~~~~~r~~~~~~~ky~~~laA 641 (673)
.+++ ++..++.++.+|+ +|.+++++ +++++|++++.++++|+++++++|||+++||+||||++||
T Consensus 536 ~~~~~~G~~~~i~~~l~~~~--------~P~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~laa 607 (624)
T PF03169_consen 536 PWGFLIGAVLPILFWLLQRK--------FPSPLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYVLAA 607 (624)
T ss_pred HHHHHHHHHHHHHHHHHHhh--------CChhheeeecccccccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhhHHHH
Confidence 3332 2233444455443 55568888 9999999999999999999999999999999999999999
Q ss_pred hHHhhHHHHHHHHHHH
Q 047730 642 GLICGDGLWILPSSIL 657 (673)
Q Consensus 642 GL~aG~al~giiia~l 657 (673)
|||+||+|++++++++
T Consensus 608 gl~aG~~l~~li~~~~ 623 (624)
T PF03169_consen 608 GLIAGEALMGLIIAFL 623 (624)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999864
No 4
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=7.4e-101 Score=888.43 Aligned_cols=584 Identities=27% Similarity=0.414 Sum_probs=476.7
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHhhhhc-----CCCCCCCCcchh
Q 047730 36 RVPPWTKHMTIRGLIVSLAIGIMYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRTWIKLLHKA-----GIVSTPFTRQEN 110 (673)
Q Consensus 36 ~~~p~~p~lT~Ra~viG~ll~~l~~~~n~y~~lr~g~~~~~si~~~ils~~~g~~l~~~lp~~-----~lnpgpf~~kE~ 110 (673)
.-||++|++|+|+|++|++++++++++|+|+++|+|+++.+++++|+++|+++|+++|++|+| ++||||||+|||
T Consensus 9 ~ddp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~~~~~~lnpgpft~kE~ 88 (654)
T TIGR00728 9 TDDPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWEGWKFSLNPGPFNVKEN 88 (654)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCccccceecCCCCCChhhh
Confidence 347788999999999999999999999999999999999999999999999999999999986 799999999999
Q ss_pred hhhhHhhhhcccccccccccccccchhhhhhhccCCCCCCCCCCCCCCCchHHHHHHHHHHHH--HHHHhhhhhccceee
Q 047730 111 TIIQTCATACYSIAVGGGFGSYLLGLNRKTYLQAGVDTPGNNPNSTKEPEIGWMTGFLFVTCF--VGLLALVPLRKIMVI 188 (673)
Q Consensus 111 ~liq~~asa~~~~~~a~g~~~~i~a~~~l~y~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~l--lG~~~Ag~lRr~lV~ 188 (673)
|++||+||++++.+++ ++.+|| |++||+. +.++++++++++++|+ +|+++|+|+||++|+
T Consensus 89 ~~iq~~asa~~~~~~~---~~~i~a-~~~~~~~--------------~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~ 150 (654)
T TIGR00728 89 NLIQTAASACGGLAYA---IFILPA-QKMFYTS--------------NFSWGYQILLVWSTQLGFLGFGFAGLLRRALVV 150 (654)
T ss_pred eeEEeeeeccccHHHH---HHHHHH-HHHHcCC--------------CCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeC
Confidence 9999999999876643 467777 5567753 2467787777777777 999999999999999
Q ss_pred cccCcCchhhHHHHHHhhcccC----CCchhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCcee
Q 047730 189 DYKLTYPSGTATAVLINGFHSS----KGNKMAKKQVRGFMKHFSFSFLWAFFQWFFTGGDLCGFVQFPTFGLKAWKNSFY 264 (673)
Q Consensus 189 p~~l~~P~~la~a~l~~~lh~~----~~~~~a~~r~~~f~~~~~~~fv~~~~~~i~~~~~~~~~~~~~~~G~~~~~~~~~ 264 (673)
|++|+||+++|+++++|+||++ +|.+.+|..++.+...|..++.|.|+.|++|.... +.-..++|.+ +++
T Consensus 151 ~~~l~~P~~la~a~l~~al~~~~~~~~g~~~~r~l~~~~~~~f~~~~~~~~~~~~~p~~~~--~~~fgglg~~----~~~ 224 (654)
T TIGR00728 151 PAKLPWPSGLATAELFKALHGKFHTANGDTIAKNLLRVLLKYFSSSFLWSFVSWFFPGFTA--FQTFGGLGSG----SIG 224 (654)
T ss_pred cccccCCcccHHHHHHHHhhhccCccCCCccchhHHHhHHHHHHHHHHHHHHHHHhcCCcc--cccccccccc----ccc
Confidence 9999999999999999998553 22222333334456777788899988888875211 1111234444 567
Q ss_pred eecc--cccccccccccHHHHHHHHHHHHHHHHHhhhhhhcccCccCCCCCCCCCcccchhhH-HHHHHHHH--------
Q 047730 265 FDFS--MTYIGAGMICSHLVNLSLLLGAVLSWGIMWPLISGLKGEWFPKTLPESSMKSLNGYK-VFVSIALI-------- 333 (673)
Q Consensus 265 ~dws--~~~iG~g~l~p~~~~~~~~~G~vl~~~ii~P~~~~~~n~w~~~~~p~~s~~~~~~y~-~~~~~~~~-------- 333 (673)
+||+ ++++|+|+++|+++++|+++|++++|+++.|++||+ |.|.++++|+++....++|. +|.+++.+
T Consensus 225 f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~-n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~~~~~~l 303 (654)
T TIGR00728 225 FGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYK-NTWPADADPIDSSSTIDSTGVRYNSVGLIVVDGLWTL 303 (654)
T ss_pred eecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhc-CccccccCCCcchhhhcCCCceeeeeeEEEeCCCcee
Confidence 8887 458899999999999999999999999999999986 78877788876532222211 12222211
Q ss_pred -----------------HHHHHH----HHHHHHHHhHHHHHHHHHhccccCCCCCCCCCCC-cchhhhhhhhhcCCchHH
Q 047730 334 -----------------LGDGLY----NFLKVAYFTGKNIQAARTRNNNIHATSDNQNSQS-LDDLQRNEIFIRESIPLW 391 (673)
Q Consensus 334 -----------------~~~g~~----~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~d~~~r~~~~~y~~vp~w 391 (673)
++.++. .++|..++++|++++++|+..+..++++++..++ .|+| |+ +|+|+|+|
T Consensus 304 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~-~~~~vP~w 379 (654)
T TIGR00728 304 VKPLYPIYSPLVLSIDFYALLFNAFSDTIYSFALAHGRDIISARRDHYKLGRDDHVRLLSRDEDLK---VK-NYKEVPAW 379 (654)
T ss_pred cHHHHHHhCcceeeHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccCCCChHHHhhccccc---cc-ccCcCcHH
Confidence 222222 2458888899999888766543111101111111 1222 33 68999999
Q ss_pred HHHHHHHHHHHHHHHhhhccc--ccchHHHHHHHHHHHHHHHhhhhhheeeeCCcchhhhHHHHHHHHHHHcCCCchHHH
Q 047730 392 LACAGYIIFSIISIIIIPLMF--LQLKWYFVVVAYLLAPILSFCNAYGAGLTDMNMAYNYGKVALFVLAALSGKENGVVA 469 (673)
Q Consensus 392 w~~~~~vv~~~~~i~~~~~~~--~~lp~~~~lla~~l~~i~~~~~~~v~g~Tg~~p~~~~~~~~~li~g~~~g~p~~~~a 469 (673)
||+.++++++++++++++.++ +++|||++++++++++++++|.++++|+| +|.+++++++|+++|+++ |+++.+
T Consensus 380 w~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~t--np~~~l~~~~~li~g~~~--pg~~~a 455 (654)
T TIGR00728 380 WYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGIT--NPVSGLNIITELIIGYIL--PGRPLA 455 (654)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEee--cccchhhHHHHHhheeec--CCcccH
Confidence 999999999999998888887 78999999999999999999999999999 677779999999999999 888899
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCccccchHHHHHH
Q 047730 470 GLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRSMLLSQAIGTAIGCVVAPLSFFLFYKAFDVGHPDREYKAPYAIVYRN 549 (673)
Q Consensus 470 ~l~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPr~~f~~QliG~ivga~v~~~v~~l~~~~~~i~~~~~~~~~P~a~~~~~ 549 (673)
||+++++++++++||+|++||||+|||+|+|||+||++|++|+++|+++++++++++.++++.. +++|+||++++|++
T Consensus 456 ~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~~--~~~~~~p~a~~~~~ 533 (654)
T TIGR00728 456 NLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGNQ--NNNFTCPNALVFYN 533 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCccCCcccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999888763 47899999999999
Q ss_pred HHH-hhhcCCCCCchh---hHHHHHHHH--HHHHHHHHHHHhccccchhhchhhHHhhcccccchhhHHHHH----HHHH
Q 047730 550 MAI-LGVQGFSALPRH---CLQLCYGFF--AFAIAANLLRDLSPKKIGKWIPLPMAMAVPFLVGAYFAIDMC----VGSL 619 (673)
Q Consensus 550 ~s~-~g~~G~~~l~~~---~~~~~~~~~--~~~i~~~ll~~~~p~~~~~~ip~p~~~~~g~~lp~~~~~~~~----iG~~ 619 (673)
+|+ |++.||+ +++. |..+.++++ +++++.++.+|++|| +++|+|+|+++++++++|+++++.++ +|++
T Consensus 534 aa~~~g~~Gp~-~f~~~~~y~~~~~~~l~G~~~i~~~~~~~~~p~-~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vG~~ 611 (654)
T TIGR00728 534 ASLIWGVIGPK-IFSGKGLYCGLMWFFLVGVGAVLVWLVRKLFPK-WIKYINPPVAVGGGGYIPPATAVNYSTWAAVGGF 611 (654)
T ss_pred heeeeccccch-hcCCCCccHHHHHHHHHHHHHHHHHHHHHHccc-hhhhcCHHHhhhhhhccCCcchhhhhHHHHHHHH
Confidence 998 9999987 7753 444444443 556788888888887 77889999999999999998888888 9999
Q ss_pred HHHHHHhhchhhh--chhhHHhhhhHHhhHHHHHHHHHH
Q 047730 620 IVFVWQKLNKKKA--DLMIPAVASGLICGDGLWILPSSI 656 (673)
Q Consensus 620 ~~~~~~r~~~~~~--~ky~~~laAGL~aG~al~giiia~ 656 (673)
++++|+||+++|| +||||++|||||+||+|+|+++++
T Consensus 612 ~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gviiff 650 (654)
T TIGR00728 612 FNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIFF 650 (654)
T ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999888776 999999999999999999999963
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=2.8e-80 Score=699.30 Aligned_cols=554 Identities=20% Similarity=0.289 Sum_probs=437.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcchhhhhhHhhhhccc
Q 047730 43 HMTIRGLIVSLAIGIMYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRTWIKLLHKAGIVSTPFTRQENTIIQTCATACYS 122 (673)
Q Consensus 43 ~lT~Ra~viG~ll~~l~~~~n~y~~lr~g~~~~~si~~~ils~~~g~~l~~~lp~~~lnpgpf~~kE~~liq~~asa~~~ 122 (673)
|+|+|++++|++++++++++|.|++||+|+++.+++++++++|.+.|.+.| +|++|||++||++|++++
T Consensus 1 elT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~-----------~t~~EnnivQT~asA~~~ 69 (591)
T TIGR00733 1 EYTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRD-----------RSILENNMVQTAASAAGT 69 (591)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhcc-----------CChhHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999998753 799999999999999987
Q ss_pred ccccccccccccchhhhhhhccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhhhccceeecccCcCchhhHHHH
Q 047730 123 IAVGGGFGSYLLGLNRKTYLQAGVDTPGNNPNSTKEPEIGWMTGFLFVTCFVGLLALVPLRKIMVIDYKLTYPSGTATAV 202 (673)
Q Consensus 123 ~~~a~g~~~~i~a~~~l~y~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~llG~~~Ag~lRr~lV~p~~l~~P~~la~a~ 202 (673)
.+ |+++.+||+.. +|. |++.+++..++++++++++|+.|+.||||++|++++|+||+++|+|+
T Consensus 70 ~a---g~~~~lPAl~~-----lg~---------~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae 132 (591)
T TIGR00733 70 LS---SVIFVLPALLM-----LGY---------WTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAE 132 (591)
T ss_pred HH---HHHHHHHHHHh-----cCc---------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHH
Confidence 64 47789999653 231 22457878888899999999999999999999999999999999999
Q ss_pred HHhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHh--hhcccccccccccccccccCCCCceeeecccccccccccccH
Q 047730 203 LINGFHSSKGNKMAKKQVRGFMKHFSFSFLWAFFQW--FFTGGDLCGFVQFPTFGLKAWKNSFYFDFSMTYIGAGMICSH 280 (673)
Q Consensus 203 l~~~lh~~~~~~~a~~r~~~f~~~~~~~fv~~~~~~--i~~~~~~~~~~~~~~~G~~~~~~~~~~dws~~~iG~g~l~p~ 280 (673)
++++.. ++ + +++|.|.++.++..+++|.+++- .++.+...+. ..|. ..+.+++||||+++|.|+++|+
T Consensus 133 ~l~~g~--~g-~-~~~~~~~l~~g~~~s~~~~~~~~~~~~~~~~~~~~----~~g~--~~~~~~~~~SpalvG~G~ivG~ 202 (591)
T TIGR00733 133 VLKAGD--KA-R-NGTGAKPIAYGGILASIYAFLGSLRVWSGTLSAAK----LVGR--RALYFGSDLSLALIGVGYLVGL 202 (591)
T ss_pred HHHccc--cc-c-chhhHHHHHHHHHHHHHHHHHHHhccCCchHHHHH----hcCC--cceEEEecccHHHHcCceeeCh
Confidence 999852 22 1 34678888889999999988741 1221100000 0111 1235778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCccCCCCCCCCCc-ccch-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 047730 281 LVNLSLLLGAVLSWGIMWPLISGLKGEWFPKTLPESSM-KSLN-GYKVFVSIALILGDGLYNFLKVAYFTGKNIQAARTR 358 (673)
Q Consensus 281 ~~~~~~~~G~vl~~~ii~P~~~~~~n~w~~~~~p~~s~-~~~~-~y~~~~~~~~~~~~g~~~l~~~~~~~~~~i~~~~~~ 358 (673)
++++++++|++++|+++.|++.. +.|.+++.++.+. ...+ .|.+|+|+++|+++|++++.+..+...+.+++.++.
T Consensus 203 ~v~~s~~~G~vlaWgvl~P~l~~--~~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~~~~~~~~~~~~~~~ 280 (591)
T TIGR00733 203 NIGFAMFLGGAIAWGVAIPIYTA--KMGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLKLRGPIARGIKAGLEA 280 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999886 3677655444221 1222 255789999999999999999888888888887776
Q ss_pred ccccCCCCCCCCCCCcchhhhhhhhhcCCchHHHHHHHHHHHHHHHHHhhhcccccch--------H-HHHHHHHHHHHH
Q 047730 359 NNNIHATSDNQNSQSLDDLQRNEIFIRESIPLWLACAGYIIFSIISIIIIPLMFLQLK--------W-YFVVVAYLLAPI 429 (673)
Q Consensus 359 ~~~~~~~~~~~~~~~~d~~~r~~~~~y~~vp~ww~~~~~vv~~~~~i~~~~~~~~~lp--------~-~~~lla~~l~~i 429 (673)
.++++ ++ ++..|. .+|+|.|+...+.++ +++. +.+..+ +.| + ...+++++++++
T Consensus 281 ~~~~~--------~~-~~~~r~----~~dip~~~v~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~la~vl~f~ 343 (591)
T TIGR00733 281 ARRRQ--------AG-EAVLRT----EEDLPINIVLTLVAL-FVIP--LADFLL-YAPILHNIGMAIAVMAVLMLIIGFF 343 (591)
T ss_pred hcccc--------cc-cccccc----cccccHHHHHHHHHH-HHHH--HHHHhc-CCcccchhhHHHHHHHHHHHHHHHH
Confidence 54321 11 111233 347998864433222 2222 111122 222 2 466788889999
Q ss_pred HHhhhhhheee--eCCcchhhhHHHHHHHHHHHc---C-------CCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 047730 430 LSFCNAYGAGL--TDMNMAYNYGKVALFVLAALS---G-------KENGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLT 497 (673)
Q Consensus 430 ~~~~~~~v~g~--Tg~~p~~~~~~~~~li~g~~~---g-------~p~~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~y~ 497 (673)
++..++++.|+ ||.||.+++++++|++++.+. | +|+++.+|++.+++.+.+++||+|++||||+||++
T Consensus 344 ~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~Ll 423 (591)
T TIGR00733 344 VAAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTGSQIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLV 423 (591)
T ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCccccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhc
Confidence 99999999999 888999999999999999886 1 15778999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCC-----CCCccccchHHHHHHHHHhhhcCCCCCchhhHHHHHHH
Q 047730 498 LTSPRSMLLSQAIGTAIGCVVAPLSFFLFYKAFDVGH-----PDREYKAPYAIVYRNMAILGVQGFSALPRHCLQLCYGF 572 (673)
Q Consensus 498 ~~pPr~~f~~QliG~ivga~v~~~v~~l~~~~~~i~~-----~~~~~~~P~a~~~~~~s~~g~~G~~~l~~~~~~~~~~~ 572 (673)
|++||+||++|++|+++|+++++++++++.++|++.+ |+++|++|||.+|+++++ |+.++ .+++. ....+
T Consensus 424 GatPr~Q~~aq~iG~~vg~~v~~~v~~ll~~ayg~~~~~~~~~~~~l~APqA~l~~ava~-gi~~~-~l~~~---~i~~g 498 (591)
T TIGR00733 424 GATPWRQQVALIIGTFVGALVMAPVLNLLIKAYGIAGTPTAKGENALPAPQAFLMAAVTE-GVFTG-TLEWT---MVFIG 498 (591)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccccCCCHHHHHHHHHh-hhcCC-CccHH---HHHHH
Confidence 9999999999999999999999999999999998743 457899999999999974 33332 33332 22334
Q ss_pred HHHHHHHHHHHHhccccchhhchhhHHhhcccccchhhHHHHHHHHHHHHHHHhhchhh------hchhhHHhhhhHHhh
Q 047730 573 FAFAIAANLLRDLSPKKIGKWIPLPMAMAVPFLVGAYFAIDMCVGSLIVFVWQKLNKKK------ADLMIPAVASGLICG 646 (673)
Q Consensus 573 ~~~~i~~~ll~~~~p~~~~~~ip~p~~~~~g~~lp~~~~~~~~iG~~~~~~~~r~~~~~------~~ky~~~laAGL~aG 646 (673)
.++++++.++++..+|+++++-.+++++++|+|+|+++++++++|++++++|+||+++. .+++++++||||++|
T Consensus 499 a~~g~~l~~~~~~~~~~~~~~~~p~lavgig~yLP~~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaG 578 (591)
T TIGR00733 499 AGIGIALIIIDEILAKRGSKFRTPVMAVGVGIYLPLSLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVG 578 (591)
T ss_pred HHHHHHHHHHHHHhhhcccccCCchhHHHHHhhcchhHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcc
Confidence 55677888898887766555533489999999999999999999999999999976432 246799999999999
Q ss_pred HHHHHHHHHHHH
Q 047730 647 DGLWILPSSILA 658 (673)
Q Consensus 647 ~al~giiia~l~ 658 (673)
|+|+|++++++.
T Consensus 579 E~l~Gv~~A~~~ 590 (591)
T TIGR00733 579 ESLTGVVFAAII 590 (591)
T ss_pred hHHHHHHHHHHh
Confidence 999999998753
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=4.3e-66 Score=556.82 Aligned_cols=571 Identities=20% Similarity=0.291 Sum_probs=425.0
Q ss_pred cCCCCC--CCCcchHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcchhh
Q 047730 34 TKRVPP--WTKHMTIRGLIVSLAIGIMYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRTWIKLLHKAGIVSTPFTRQENT 111 (673)
Q Consensus 34 ~~~~~p--~~p~lT~Ra~viG~ll~~l~~~~n~y~~lr~g~~~~~si~~~ils~~~g~~l~~~lp~~~lnpgpf~~kE~~ 111 (673)
++.++| ++||+|+|.+++|+++++++.++|+|+|+|+|.++.+|++++++|+.++|.++ ++|+.|||
T Consensus 3 ~~~~~~~~~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~~-----------~~silENN 71 (624)
T COG1297 3 KPRPHPTAFLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAFK-----------GSSILENN 71 (624)
T ss_pred CCCCCccccccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHhC-----------ccchhhhH
Confidence 344444 45999999999999999999999999999999999999999999999999874 57999999
Q ss_pred hhhHhhhhcccccccccccccccchhhhhhhccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhhhccceeeccc
Q 047730 112 IIQTCATACYSIAVGGGFGSYLLGLNRKTYLQAGVDTPGNNPNSTKEPEIGWMTGFLFVTCFVGLLALVPLRKIMVIDYK 191 (673)
Q Consensus 112 liq~~asa~~~~~~a~g~~~~i~a~~~l~y~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~llG~~~Ag~lRr~lV~p~~ 191 (673)
++||+||+++..+ .++++.+|++..+ | +|.+.+++....++..++++|+.|++||||.+|.+++
T Consensus 72 mVQT~ASAagtls--a~vIFviPgl~m~-----g---------~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~sk 135 (624)
T COG1297 72 MVQTQASAAGTLS--AGVIFVLPGLLML-----G---------YWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESK 135 (624)
T ss_pred HHHHHHhhhcccc--ccEEEechhHHhh-----c---------cccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCC
Confidence 9999999998765 4578999997643 2 3556678566666788999999999999999999999
Q ss_pred CcCchhhHHHHHHhhcccCCCchhhhhHHHHHHHHHHHHHHHHHHHh---hhcccccccccccccccccCCCCceeeecc
Q 047730 192 LTYPSGTATAVLINGFHSSKGNKMAKKQVRGFMKHFSFSFLWAFFQW---FFTGGDLCGFVQFPTFGLKAWKNSFYFDFS 268 (673)
Q Consensus 192 l~~P~~la~a~l~~~lh~~~~~~~a~~r~~~f~~~~~~~fv~~~~~~---i~~~~~~~~~~~~~~~G~~~~~~~~~~dws 268 (673)
+|||||.|+||++++..++|++. +..|-.......++++.++.- +...++..++. -|- .-..+..+.|
T Consensus 136 LPyPeGvAaAEvL~~g~~~~gd~---~g~~~i~~g~~~~~~~~~l~~g~~~~~~~~~~~~~----~~~--~~~~lg~~~S 206 (624)
T COG1297 136 LPYPEGVAAAEVLKAGNQREGDA---SGIKLIALGGALAALYSLLASGLRVIASSLSAAFS----VGR--AAFALGLGLS 206 (624)
T ss_pred CCCCCchhHHHHHHhcCCCCCCc---ccchhhhhhhHHHHHHHHHhccceeehhhHHHHHH----hcc--hhhhhccccc
Confidence 99999999999999986544432 234445566666677766531 11111111111 010 0113567788
Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHhhhhhhcccCccCCCCCCCCCc-ccch-hhHHHHHHHHHHHHHHHHHHHHHH
Q 047730 269 MTYIGAGMICSHLVNLSLLLGAVLSWGIMWPLISGLKGEWFPKTLPESSM-KSLN-GYKVFVSIALILGDGLYNFLKVAY 346 (673)
Q Consensus 269 ~~~iG~g~l~p~~~~~~~~~G~vl~~~ii~P~~~~~~n~w~~~~~p~~s~-~~~~-~y~~~~~~~~~~~~g~~~l~~~~~ 346 (673)
++++|.|+++|+.+...++.|..++|++.+|++.+ +.|.|++....+. ...+ .+.+|+++|.+...+++++.+...
T Consensus 207 ~AliG~GylvGl~~~iaml~G~~iaWgvavP~~~~--~~~~p~~~~~~~~a~~vW~s~VrfIGaG~i~i~~~wtl~~l~~ 284 (624)
T COG1297 207 LALIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTL--IVPGPSDQEAGVQAWKVWSSKVRFIGAGAIAIAAIWTLISLLG 284 (624)
T ss_pred HHHhCceEEecchHHHHHHHHHHHHHHHHHHHHHh--cccCCCchhHHHHHHHHhhheeEEeehhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998765 3555432111000 1111 133799999999999999998888
Q ss_pred HhHHHHHHHHHhccccCCCCCCCCCCCcchhhhhhhhhcCCchHHHHHHHHHHHHHHHHHhhhcccc----------cch
Q 047730 347 FTGKNIQAARTRNNNIHATSDNQNSQSLDDLQRNEIFIRESIPLWLACAGYIIFSIISIIIIPLMFL----------QLK 416 (673)
Q Consensus 347 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~r~~~~~y~~vp~ww~~~~~vv~~~~~i~~~~~~~~----------~lp 416 (673)
...|.+++.++..+.++ +...+.|.++ |+|..|-... +++..+.+.....-+. .+-
T Consensus 285 pi~~gi~~~f~~~r~~~---------~~~~~~rte~----Dl~~~~~~~~-~~~~~v~l~~~~~~~l~~~~~~~~~~~~~ 350 (624)
T COG1297 285 PILRGIKATFESARGRR---------RAGAVSRTER----DLPPKLVLLV-LLATVVALGLLLAHFLRGTPLSSCRWLLV 350 (624)
T ss_pred HHHHHHHHHHHHhhccc---------ccccccchhh----cCChhhHHHH-HHHHHHHHHHHHHhhhccCcccchhhHHH
Confidence 88899998887765311 1111225444 7777654333 2334444433222211 112
Q ss_pred HHHHHHHHHHHHHHHhhhhhheeeeCC--cchhhhHHHHHHHHHHHc---C-----------CCchHHHHHHHHHHHHHH
Q 047730 417 WYFVVVAYLLAPILSFCNAYGAGLTDM--NMAYNYGKVALFVLAALS---G-----------KENGVVAGLVGCGLIKSI 480 (673)
Q Consensus 417 ~~~~lla~~l~~i~~~~~~~v~g~Tg~--~p~~~~~~~~~li~g~~~---g-----------~p~~~~a~l~~~~~~~~~ 480 (673)
.-++++++++++.+.-.+++++|..+- +|.++++.+++++.+.++ | +|..+.++++.+++.+.+
T Consensus 351 ~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~~l~~l~~G~~~~~~~~~~~~~~~~~~~~~t~~vv~a~ 430 (624)
T COG1297 351 VVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLLSLLILILGQSGGLFIDPLMRKFLVAATLFTASVVAAV 430 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHhccccccccCcccchhHHHHHHHHHHHHHHH
Confidence 344567777788888899999999755 688888888887775433 3 235567899999999999
Q ss_pred HHHHHHHhhhhhhhhccCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCC----CCccccchHHHHHHHHHhhhc
Q 047730 481 VSISSDLMHDFKTGHLTLTSPRSMLLSQAIGTAIGCVVAPLSFFLFYKAFDVGHP----DREYKAPYAIVYRNMAILGVQ 556 (673)
Q Consensus 481 ~~qa~~~~~DlK~G~y~~~pPr~~f~~QliG~ivga~v~~~v~~l~~~~~~i~~~----~~~~~~P~a~~~~~~s~~g~~ 556 (673)
++++.|++|||||||++|++||+||.+|++|+.+|+++..+++.++.++|++.++ +...++||+..+.+.+ .|+.
T Consensus 431 A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL~ll~~aYgf~ga~~r~~~~l~apqa~lma~ia-~Gvf 509 (624)
T COG1297 431 AAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVLELLNKAYGFAGAPPRQGMDLAAPQATLMATIA-KGVF 509 (624)
T ss_pred HHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCcCCCCCCCCCCCcchHHHHHHHHh-cccC
Confidence 9999999999999999999999999999999999999999999999999998632 1228999999999886 3433
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHhccccchhhchhhHHhhcccccchhhHHHHHHHHHHHHHHHhhc-------h
Q 047730 557 GFSALPRHCLQLCYGFFAFAIAANLLRDLSPKKIGKWIPLPMAMAVPFLVGAYFAIDMCVGSLIVFVWQKLN-------K 629 (673)
Q Consensus 557 G~~~l~~~~~~~~~~~~~~~i~~~ll~~~~p~~~~~~ip~p~~~~~g~~lp~~~~~~~~iG~~~~~~~~r~~-------~ 629 (673)
+ +.+.|.+ .+.+...++.+..+..+.++++.|+.+.++++++|+|+|++.+.++++|++.+|.+.|+. .
T Consensus 510 ~-~~lew~m---i~~g~~~gi~lI~id~~l~~~~~~~~lpvlAvGvGIylP~s~~ipi~vG~~l~~~v~~~~~~~~~~~~ 585 (624)
T COG1297 510 T-GNLEWSM---ILAGAGIGIVLIGIDERLKGRGGKLRLPVLAVGVGIYLPPSLTIPIFVGGVLRWAVDRKLKKGDERYK 585 (624)
T ss_pred C-CCcchHH---HHHHHhHhheeeeccHHHhcCCccccccceeeeeeeecChhhchHHHHHHHHHHHHHHhcccccchhh
Confidence 3 3444442 112233334444444444446666644489999999999999999999999999999862 2
Q ss_pred hhhchhhHHhhhhHHhhHHHHHHHHHHHHhcC
Q 047730 630 KKADLMIPAVASGLICGDGLWILPSSILALAK 661 (673)
Q Consensus 630 ~~~~ky~~~laAGL~aG~al~giiia~l~~~g 661 (673)
+.-++.++++||||++||+|+|++++.+...+
T Consensus 586 e~~~r~gvl~aaGLIvGEsL~gvi~a~ii~~~ 617 (624)
T COG1297 586 ERAKRIGVLFAAGLIVGESLFGVITALIIVGS 617 (624)
T ss_pred hcccceeEEEeeccccchHHHHHHHHHHheec
Confidence 23456899999999999999999999877754
No 7
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=94.68 E-value=4.7 Score=47.05 Aligned_cols=149 Identities=15% Similarity=0.093 Sum_probs=84.1
Q ss_pred CCChhhHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCccccchHHHHHHHHHhhhcCCCCCchhhHHHHHHHHHHHH
Q 047730 498 LTSPRSMLLSQAIGTAIGCVVAPLSFFLFYKAFDVGHPDREYKAPYAIVYRNMAILGVQGFSALPRHCLQLCYGFFAFAI 577 (673)
Q Consensus 498 ~~pPr~~f~~QliG~ivga~v~~~v~~l~~~~~~i~~~~~~~~~P~a~~~~~~s~~g~~G~~~l~~~~~~~~~~~~~~~i 577 (673)
..|..++...=+.|.++|.+..+++.+.+...++ ++=|...+=+..-+.+-.|+.+ ...+.+...+++.++
T Consensus 88 ~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~-------L~fP~G~A~Ae~l~~g~~g~~~--~~~~~l~~g~~~s~~ 158 (591)
T TIGR00733 88 EFPYWITTVICALGGSLGVLFTIPLRRAFVVESK-------LPYPEGVACAEVLKAGDKARNG--TGAKPIAYGGILASI 158 (591)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------CCCCCHHHHHHHHHccccccch--hhHHHHHHHHHHHHH
Confidence 3466777778889999999999999877655332 3334333333221122222100 112333333333232
Q ss_pred HHHH-HHHhccc-----------cch-hhchhhHHhhcccccchhhHHHHHHHHHHHHHHH-----hh-c-hh-------
Q 047730 578 AANL-LRDLSPK-----------KIG-KWIPLPMAMAVPFLVGAYFAIDMCVGSLIVFVWQ-----KL-N-KK------- 630 (673)
Q Consensus 578 ~~~l-l~~~~p~-----------~~~-~~ip~p~~~~~g~~lp~~~~~~~~iG~~~~~~~~-----r~-~-~~------- 630 (673)
.-++ .-+.+|. .+. ..=.+|..+|.|+..++..+..+++|+++.|.+- ++ . +.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~SpalvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~~~~~~~~~~~ 238 (591)
T TIGR00733 159 YAFLGSLRVWSGTLSAAKLVGRRALYFGSDLSLALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMGSPGDLSALDL 238 (591)
T ss_pred HHHHHHhccCCchHHHHHhcCCcceEEEecccHHHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHH
Confidence 2111 0112221 010 1124589999999999999999999999987742 21 1 10
Q ss_pred ---hhchhhHHhhhhHHhhHHHHHHHHH
Q 047730 631 ---KADLMIPAVASGLICGDGLWILPSS 655 (673)
Q Consensus 631 ---~~~ky~~~laAGL~aG~al~giiia 655 (673)
-|.+|---++.|.+.++++..++..
T Consensus 239 ~~~vw~~~vR~iGvg~m~~~gl~~l~~~ 266 (591)
T TIGR00733 239 AWTIWSTKVRYIGVGAIVVAALWTLLKL 266 (591)
T ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 1222222269999999999988753
No 8
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=89.24 E-value=7.7 Score=45.70 Aligned_cols=28 Identities=14% Similarity=0.427 Sum_probs=24.3
Q ss_pred hHHhhcccccchhhHHHHHHHHHHHHHH
Q 047730 597 PMAMAVPFLVGAYFAIDMCVGSLIVFVW 624 (673)
Q Consensus 597 p~~~~~g~~lp~~~~~~~~iG~~~~~~~ 624 (673)
++.++.|++.|......+++|.++.|++
T Consensus 217 ~~~~g~g~i~p~~~~ls~~~G~v~~w~i 244 (624)
T PF03169_consen 217 PILIGSGLIVPLWAQLSMFLGAVLAWGI 244 (624)
T ss_pred HHhcCCCeeccHHHHHHHHHHHHHHHHh
Confidence 6678899999999999999999998753
No 9
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=59.37 E-value=25 Score=34.49 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=21.1
Q ss_pred ChHHHHHHhhhcchhhH-----HHHHhhhhhccccCCCCCC
Q 047730 5 NSEEMRDIARVNPVIEE-----MELEQIQEQEEDTKRVPPW 40 (673)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~ 40 (673)
..-+|+.++++|.+.++ +++||.+++=++.+..||.
T Consensus 60 ~~~nl~~l~~v~~l~~~~~~~~~~~~ea~~~L~~I~~~~~~ 100 (193)
T PF06738_consen 60 RGVNLDKLAAVNRLSRRIVAGQLSLEEAIERLDEIDREPPR 100 (193)
T ss_pred CCcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCC
Confidence 34467788888888776 4455555444444444433
No 10
>COG1297 Predicted membrane protein [Function unknown]
Probab=47.73 E-value=1.6e+02 Score=34.14 Aligned_cols=126 Identities=14% Similarity=0.071 Sum_probs=71.8
Q ss_pred hhhhhhccCCChhhHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCccccchHHHHHHHHHhhhcCCCCCchhhHHHH
Q 047730 490 DFKTGHLTLTSPRSMLLSQAIGTAIGCVVAPLSFFLFYKAFDVGHPDREYKAPYAIVYRNMAILGVQGFSALPRHCLQLC 569 (673)
Q Consensus 490 DlK~G~y~~~pPr~~f~~QliG~ivga~v~~~v~~l~~~~~~i~~~~~~~~~P~a~~~~~~s~~g~~G~~~l~~~~~~~~ 569 (673)
=++.||+-+-|=++++..-..|.++|.+..+++.+.+.-. +++|-|...+=+..=+.|.. +++-+++.....
T Consensus 94 l~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~-------skLPyPeGvAaAEvL~~g~~-~~gd~~g~~~i~ 165 (624)
T COG1297 94 LLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVE-------SKLPYPEGVAAAEVLKAGNQ-REGDASGIKLIA 165 (624)
T ss_pred HHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeecc-------CCCCCCCchhHHHHHHhcCC-CCCCcccchhhh
Confidence 4788999999999999999999999999998886543321 33455544333333122220 111112333333
Q ss_pred HHHHHHHHHHHHHH--Hhccc----------c---chhhchhhHHhhcccccchhhHHHHHHHHHHHHHH
Q 047730 570 YGFFAFAIAANLLR--DLSPK----------K---IGKWIPLPMAMAVPFLVGAYFAIDMCVGSLIVFVW 624 (673)
Q Consensus 570 ~~~~~~~i~~~ll~--~~~p~----------~---~~~~ip~p~~~~~g~~lp~~~~~~~~iG~~~~~~~ 624 (673)
+.+.+.++.-++-. |..+. + +..... +...|.|.++.......+++|.++.|.+
T Consensus 166 ~g~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~lg~~~S-~AliG~GylvGl~~~iaml~G~~iaWgv 234 (624)
T COG1297 166 LGGALAALYSLLASGLRVIASSLSAAFSVGRAAFALGLGLS-LALIGAGYLVGLPAGIAMLIGIFIAWGV 234 (624)
T ss_pred hhhHHHHHHHHHhccceeehhhHHHHHHhcchhhhhccccc-HHHhCceEEecchHHHHHHHHHHHHHHH
Confidence 44333332222211 11111 1 122232 6667777777778888999999888765
No 11
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=46.33 E-value=26 Score=23.95 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047730 48 GLIVSLAIGIMYSVIVMK 65 (673)
Q Consensus 48 a~viG~ll~~l~~~~n~y 65 (673)
+|++|+.+++.++++|..
T Consensus 5 aWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998864
No 12
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=44.09 E-value=30 Score=23.29 Aligned_cols=18 Identities=6% Similarity=0.283 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047730 48 GLIVSLAIGIMYSVIVMK 65 (673)
Q Consensus 48 a~viG~ll~~l~~~~n~y 65 (673)
+|++|+++++.++.+|..
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 699999999999998863
No 13
>PRK14749 hypothetical protein; Provisional
Probab=43.91 E-value=30 Score=23.45 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047730 48 GLIVSLAIGIMYSVIVMK 65 (673)
Q Consensus 48 a~viG~ll~~l~~~~n~y 65 (673)
+|++|+.+++.++.+|..
T Consensus 5 aWiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998864
No 14
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=41.44 E-value=11 Score=33.03 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=26.4
Q ss_pred HHhhHHHHHHHHHHHHhcCCCCccccccccC
Q 047730 643 LICGDGLWILPSSILALAKIRPPICMKFLAS 673 (673)
Q Consensus 643 L~aG~al~giiia~l~~~gv~~~~~~~~~~~ 673 (673)
+.+|..+..+++++|.+.-+.-|.|+|++.|
T Consensus 19 ~LVGVv~~al~~SlLIalaaKC~~~~k~~~S 49 (102)
T PF15176_consen 19 FLVGVVVTALVTSLLIALAAKCPVWYKYLAS 49 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3467888888899999999999999999875
No 15
>PF11449 DUF2899: Protein of unknown function (DUF2899); InterPro: IPR021552 This is a bacterial family of uncharacterised proteins.
Probab=36.05 E-value=1.1e+02 Score=32.43 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=22.5
Q ss_pred CCChhhHHHHHHHHHHHHHhHHHHHHH
Q 047730 498 LTSPRSMLLSQAIGTAIGCVVAPLSFF 524 (673)
Q Consensus 498 ~~pPr~~f~~QliG~ivga~v~~~v~~ 524 (673)
+.+||+-..+.+++++.+.+|.++.+.
T Consensus 271 ~~~~~~~~~~~i~~~l~al~Vg~g~y~ 297 (298)
T PF11449_consen 271 AMNPKAAENATIYSTLPALIVGYGLYF 297 (298)
T ss_pred hhCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 467888899999999999888888754
No 16
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=31.03 E-value=64 Score=22.65 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 047730 48 GLIVSLAIGIMYSVIVMK 65 (673)
Q Consensus 48 a~viG~ll~~l~~~~n~y 65 (673)
+|++|.++++-++.+|..
T Consensus 5 aWiLG~lLAcAFgiinAl 22 (37)
T COG4890 5 AWILGLLLACAFGIINAL 22 (37)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999988864
No 17
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=30.92 E-value=46 Score=34.68 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=20.7
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcchhhhhhHhh
Q 047730 69 TTGLVPNLNVSAALLAFVFVRTWIKLLHKAGIVSTPFTRQENTIIQTCA 117 (673)
Q Consensus 69 r~g~~~~~si~~~ils~~~g~~l~~~lp~~~lnpgpf~~kE~~liq~~a 117 (673)
........++.+.++||.+.--++.-|.++ +-+|+.+-|++-
T Consensus 182 ~iA~Alv~T~~Gi~~ay~~~~P~a~kLk~~-------~~~e~~~~~~i~ 223 (266)
T COG1291 182 LIAAALVGTLYGIFLAYGLFGPLANKLKQK-------SDEEVKLKEIII 223 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHH
Confidence 333333444555555555555444444443 345666555543
No 18
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=30.87 E-value=1.3e+02 Score=30.70 Aligned_cols=44 Identities=11% Similarity=0.329 Sum_probs=21.4
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHH
Q 047730 384 IRESIPLWLACAGYIIFSIISIIIIPLMFLQLKWYFVVVAYLLAPIL 430 (673)
Q Consensus 384 ~y~~vp~ww~~~~~vv~~~~~i~~~~~~~~~lp~~~~lla~~l~~i~ 430 (673)
.+|.+++|..+ .+++.+++++ +.....+-+|+.++++++++++.
T Consensus 23 ~dp~l~~~ml~-a~l~~~~v~v--~ig~l~~~~~~~~i~gi~~g~l~ 66 (224)
T PF13829_consen 23 EDPKLPWLMLG-AFLGPIAVFV--LIGLLFGSWWYWLIIGILLGLLA 66 (224)
T ss_pred HCcchHHHHHH-HHHHHHHHHH--HHHHHHccHHHHHHHHHHHHHHH
Confidence 35566655433 3333333332 22222345566677777776654
No 19
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=29.12 E-value=4.9e+02 Score=24.48 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 047730 281 LVNLSLLLGAVLSWGIMWPLI 301 (673)
Q Consensus 281 ~~~~~~~~G~vl~~~ii~P~~ 301 (673)
+++..+|.+..+...++..++
T Consensus 2 k~ea~lF~~l~~Ff~~~~~vY 22 (137)
T PF12270_consen 2 KVEAKLFYGLAVFFLVVAVVY 22 (137)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 355667777666666665543
No 20
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=24.97 E-value=8.5e+02 Score=28.89 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=22.8
Q ss_pred hHHhhcccccchhhHHHHHHHHHHHHHH
Q 047730 597 PMAMAVPFLVGAYFAIDMCVGSLIVFVW 624 (673)
Q Consensus 597 p~~~~~g~~lp~~~~~~~~iG~~~~~~~ 624 (673)
+..++.|+..|...+..+++|+++.|++
T Consensus 231 ~~~~g~gli~p~~~~~~~~~G~vl~~~i 258 (654)
T TIGR00728 231 SAYIGSGLITPFTVGLNMLLGVILAFGI 258 (654)
T ss_pred HhhcCCCccCCHHHHHHHHHHHHHHHHH
Confidence 4556778888989999999999888754
No 21
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=23.60 E-value=1e+02 Score=35.53 Aligned_cols=64 Identities=11% Similarity=0.212 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCcch
Q 047730 46 IRGLIVSLAIGIMYSVIVMKLNLTTGLVPNLNVSAALLAFVFVRTWIKLLHKAGIVSTPFTRQE 109 (673)
Q Consensus 46 ~Ra~viG~ll~~l~~~~n~y~~lr~g~~~~~si~~~ils~~~g~~l~~~lp~~~lnpgpf~~kE 109 (673)
.+++++.++.+++.+.+..--.--........+.+..+||.+=-.+.-.+-|++++||||+.--
T Consensus 392 ~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~~f~~gp~~lGk 455 (550)
T KOG1289|consen 392 LNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIFCRLFFGRDDFRPGPFNLGK 455 (550)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheeecccccCCCCccccc
Confidence 5677777777766655433222222333455677777888776666555556679999998743
No 22
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.53 E-value=1.9e+02 Score=26.06 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHhhhh
Q 047730 393 ACAGYIIFSIISIIIIPLMFLQLKWYFVVVAYLLAPILSFCNA 435 (673)
Q Consensus 393 ~~~~~vv~~~~~i~~~~~~~~~lp~~~~lla~~l~~i~~~~~~ 435 (673)
++++.+|...++.++ -.+ .+..+|++++.+++++...+-+.
T Consensus 52 fIsGilVGa~iG~ll-D~~-agTsPwglIv~lllGf~AG~lnv 92 (116)
T COG5336 52 FISGILVGAGIGWLL-DKF-AGTSPWGLIVFLLLGFGAGVLNV 92 (116)
T ss_pred HHHHHHHHHHHHHHH-HHh-cCCCcHHHHHHHHHHHHHHHHHH
Confidence 666777766666543 333 36778888888888888777654
Done!