Query 047730
Match_columns 673
No_of_seqs 136 out of 1134
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 03:49:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_U RPL35, 60S ribosomal pr 38.5 16 0.00056 32.3 2.5 33 9-41 52-84 (124)
2 3u5e_h 60S ribosomal protein L 37.4 19 0.00067 31.6 2.8 35 7-41 46-80 (120)
3 3jyw_X 60S ribosomal protein L 31.3 13 0.00045 30.7 0.7 21 10-30 48-68 (86)
4 3iz5_c 60S ribosomal protein L 26.3 29 0.00099 30.7 2.1 32 9-40 52-83 (124)
5 3j21_W 50S ribosomal protein L 23.2 31 0.001 27.5 1.5 21 10-30 49-69 (72)
6 2zkr_v 60S ribosomal protein L 19.5 24 0.00084 31.1 0.2 33 9-41 51-83 (123)
7 1vq8_V 50S ribosomal protein L 12.5 45 0.0015 26.4 0.0 17 9-25 51-67 (71)
8 3v2d_2 50S ribosomal protein L 10.0 78 0.0027 25.1 0.6 16 9-24 54-69 (72)
9 1r73_A TM1492, 50S ribosomal p 9.6 89 0.003 24.3 0.8 16 9-24 47-62 (66)
10 2zjr_V 50S ribosomal protein L 8.6 76 0.0026 24.8 0.0 17 9-25 47-63 (67)
No 1
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=38.51 E-value=16 Score=32.29 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=27.5
Q ss_pred HHHHhhhcchhhHHHHHhhhhhccccCCCCCCC
Q 047730 9 MRDIARVNPVIEEMELEQIQEQEEDTKRVPPWT 41 (673)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 41 (673)
=|||||++-|+.|-+.|++.+--..++..|-|+
T Consensus 52 RRdIARi~Tvl~er~~~~lr~~yk~kk~~P~dl 84 (124)
T 4a17_U 52 RKAIAKYLTIINEKRRQAVKDQFKGKSLKPLDI 84 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Confidence 379999999999999999987666666677776
No 2
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=37.45 E-value=19 Score=31.63 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=28.5
Q ss_pred HHHHHHhhhcchhhHHHHHhhhhhccccCCCCCCC
Q 047730 7 EEMRDIARVNPVIEEMELEQIQEQEEDTKRVPPWT 41 (673)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 41 (673)
+-=|||||++-|+.|-|+|++.+--..++..|-|+
T Consensus 46 ~vRR~IARi~Tvl~er~~~~lr~~yk~kk~~p~dl 80 (120)
T 3u5e_h 46 TVRKSIACVLTVINEQQREAVRQLYKGKKYQPKDL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Confidence 33479999999999999999987766666677776
No 3
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=31.30 E-value=13 Score=30.71 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=18.4
Q ss_pred HHHhhhcchhhHHHHHhhhhh
Q 047730 10 RDIARVNPVIEEMELEQIQEQ 30 (673)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (673)
|||||++-|+.|.+++++++.
T Consensus 48 RdIARikTvl~er~~~~lr~~ 68 (86)
T 3jyw_X 48 KSIACVLTVINEQQAAAAAAA 68 (86)
T ss_dssp TTTHHHHTTTTHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999888653
No 4
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=26.34 E-value=29 Score=30.69 Aligned_cols=32 Identities=28% Similarity=0.247 Sum_probs=24.6
Q ss_pred HHHHhhhcchhhHHHHHhhhhhccccCCCCCC
Q 047730 9 MRDIARVNPVIEEMELEQIQEQEEDTKRVPPW 40 (673)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 40 (673)
=|||||++-|+.|-+++++.+--..++..|-|
T Consensus 52 RRdIARi~Tvl~er~~~~lr~~yk~kk~~P~d 83 (124)
T 3iz5_c 52 RKSIARVLTVINAKQRAQLRLFYKNKKYAPLD 83 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSCCCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCcc
Confidence 37999999999999999998755455545444
No 5
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.23 E-value=31 Score=27.50 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=17.7
Q ss_pred HHHhhhcchhhHHHHHhhhhh
Q 047730 10 RDIARVNPVIEEMELEQIQEQ 30 (673)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (673)
|||||+.-|+.+-++++-+++
T Consensus 49 r~IARi~Tvl~er~~~~~~~~ 69 (72)
T 3j21_W 49 RDIARLLTIKKEKLREREKGK 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 699999999999888776654
No 6
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=19.49 E-value=24 Score=31.13 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=12.7
Q ss_pred HHHHhhhcchhhHHHHHhhhhhccccCCCCCCC
Q 047730 9 MRDIARVNPVIEEMELEQIQEQEEDTKRVPPWT 41 (673)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 41 (673)
=|||||+.-|+.|-+++++.+.-..++..|-|+
T Consensus 51 RrdIARI~Tvl~er~~~~lr~~yk~kk~~p~dl 83 (123)
T 2zkr_v 51 RKSIARVLTVINQTQKENLRKFYKGKKYKPLDL 83 (123)
T ss_dssp HHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Confidence 368999999999998888877655555555555
No 7
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=12.49 E-value=45 Score=26.42 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=12.5
Q ss_pred HHHHhhhcchhhHHHHH
Q 047730 9 MRDIARVNPVIEEMELE 25 (673)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (673)
=|||||+.-|+.+-+.+
T Consensus 51 Rr~IARi~Tvl~er~~~ 67 (71)
T 1vq8_V 51 RKAIARIKTIQGEEGDL 67 (71)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36899999998875433
No 8
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=9.99 E-value=78 Score=25.09 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=12.9
Q ss_pred HHHHhhhcchhhHHHH
Q 047730 9 MRDIARVNPVIEEMEL 24 (673)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (673)
=|||||+.-|+.+-++
T Consensus 54 Rr~IARi~Tvl~er~~ 69 (72)
T 3v2d_2 54 KRQIARLLTVLNEKRR 69 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3799999999888554
No 9
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=9.56 E-value=89 Score=24.28 Aligned_cols=16 Identities=50% Similarity=0.810 Sum_probs=12.9
Q ss_pred HHHHhhhcchhhHHHH
Q 047730 9 MRDIARVNPVIEEMEL 24 (673)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (673)
=|||||+.-|+.+-++
T Consensus 47 Rr~IARi~Tvl~er~~ 62 (66)
T 1r73_A 47 KRDIARIKTILREREL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3689999999988654
No 10
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=8.57 E-value=76 Score=24.75 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=12.9
Q ss_pred HHHHhhhcchhhHHHHH
Q 047730 9 MRDIARVNPVIEEMELE 25 (673)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (673)
=|||||+.-|+.+-+++
T Consensus 47 Rr~IARi~Tvl~er~~~ 63 (67)
T 2zjr_V 47 RREVAQLNTVKAELARK 63 (67)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 36899999998875443
Done!