Query 047730
Match_columns 673
No_of_seqs 136 out of 1134
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 03:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047730.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047730hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2zjrv1 a.2.2.1 (V:1-66) Ribos 6.8 49 0.0036 23.8 0.1 15 9-23 47-61 (66)
2 d2gycw1 a.2.2.1 (W:1-60) Ribos 5.5 77 0.0056 22.2 0.5 12 10-21 48-59 (60)
3 d1vqov1 a.2.2.1 (V:1-65) Ribos 5.4 78 0.0057 22.6 0.5 13 9-21 50-62 (65)
4 d1q90m_ f.23.25.1 (M:) PetM su 5.4 2.5E+02 0.018 16.7 2.8 14 641-654 2-15 (34)
5 d1r73a_ a.2.2.1 (A:) Ribosomal 5.2 93 0.0067 22.2 0.8 16 9-24 47-62 (66)
6 g2vt1.1 d.367.1.1 (A:237-257,B 3.7 2E+02 0.015 22.2 1.9 34 6-40 50-87 (102)
7 d1q90l_ f.23.24.1 (L:) PetL su 3.7 3.1E+02 0.022 16.0 2.2 23 45-68 3-25 (32)
8 d1gvda_ a.4.1.3 (A:) c-Myb, DN 3.7 1.7E+02 0.012 19.5 1.2 19 100-118 1-19 (52)
9 d1zava1 d.58.62.1 (A:1-177) Ri 3.3 3.5E+02 0.026 22.5 3.3 29 492-520 127-155 (177)
10 g3bzy.1 d.367.1.1 (A:246-262,B 3.1 2.3E+02 0.017 21.8 1.6 20 6-25 46-67 (100)
No 1
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=6.82 E-value=49 Score=23.83 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=12.0
Q ss_pred HHHHhhhcchhhHHH
Q 047730 9 MRDIARVNPVIEEME 23 (673)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (673)
=|||||++-++.+-+
T Consensus 47 Rk~IARi~Tvl~er~ 61 (66)
T d2zjrv1 47 RREVAQLNTVKAELA 61 (66)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 379999999988743
No 2
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]}
Probab=5.51 E-value=77 Score=22.21 Aligned_cols=12 Identities=50% Similarity=0.916 Sum_probs=9.7
Q ss_pred HHHhhhcchhhH
Q 047730 10 RDIARVNPVIEE 21 (673)
Q Consensus 10 ~~~~~~~~~~~~ 21 (673)
|||||+.-++.|
T Consensus 48 k~IARi~Tvl~e 59 (60)
T d2gycw1 48 RDVARVKTLLNE 59 (60)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 689999888764
No 3
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=5.44 E-value=78 Score=22.61 Aligned_cols=13 Identities=31% Similarity=0.509 Sum_probs=10.7
Q ss_pred HHHHhhhcchhhH
Q 047730 9 MRDIARVNPVIEE 21 (673)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (673)
=|||||++-++.|
T Consensus 50 Rk~IARi~Tvl~e 62 (65)
T d1vqov1 50 RKAIARIKTIQGE 62 (65)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4799999988766
No 4
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.39 E-value=2.5e+02 Score=16.70 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=9.6
Q ss_pred hhHHhhHHHHHHHH
Q 047730 641 SGLICGDGLWILPS 654 (673)
Q Consensus 641 AGL~aG~al~giii 654 (673)
|++++|.++.-+-+
T Consensus 2 a~fiagta~tmig~ 15 (34)
T d1q90m_ 2 AEFIAGTALTMVGM 15 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CceecchhHHHHHH
Confidence 67888888764443
No 5
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]}
Probab=5.23 E-value=93 Score=22.24 Aligned_cols=16 Identities=50% Similarity=0.810 Sum_probs=12.7
Q ss_pred HHHHhhhcchhhHHHH
Q 047730 9 MRDIARVNPVIEEMEL 24 (673)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (673)
=|||||+.-++.|-++
T Consensus 47 Rk~IARi~Tvl~er~~ 62 (66)
T d1r73a_ 47 KRDIARIKTILREREL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3689999999888554
No 6
>g2vt1.1 d.367.1.1 (A:237-257,B:258-338) Surface presentation of antigens protein SpaS {Shigella flexneri [TaxId: 623]}
Probab=3.74 E-value=2e+02 Score=22.25 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=21.3
Q ss_pred hHHHHHHhhhc--chhhHHHHHh-h-hhhccccCCCCCC
Q 047730 6 SEEMRDIARVN--PVIEEMELEQ-I-QEQEEDTKRVPPW 40 (673)
Q Consensus 6 ~~~~~~~~~~~--~~~~~~~~~~-~-~~~~~~~~~~~p~ 40 (673)
.+++|++|+-+ |++|.-+|-+ | +.-| -.+.+|++
T Consensus 50 A~~I~~~A~e~gIPi~ed~~LAr~L~~~~~-ig~~IP~e 87 (102)
T g2vt1.1 50 ALAVRKYANEVGIPTVRDVKLARKLYKTHT-KYSFVDFE 87 (102)
T ss_dssp HHHHHHHHHHTTCCEEECHHHHHHHHHHCC-SSEECCTT
T ss_pred HHHHHHHHHHcCCcEEECHHHHHHHHHcCC-CCCcCCHH
Confidence 36899999887 7788766653 5 3333 34445544
No 7
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.73 E-value=3.1e+02 Score=16.02 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcc
Q 047730 45 TIRGLIVSLAIGIMYSVIVMKLNL 68 (673)
Q Consensus 45 T~Ra~viG~ll~~l~~~~n~y~~l 68 (673)
|+-++ +|.++++++-....|+|+
T Consensus 3 ti~sy-vglligal~~tlgiylgl 25 (32)
T d1q90l_ 3 TITSY-VGLLIGALVFTLGIYLGL 25 (32)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ehHHH-HHHHHHHHHHHHHHHHHH
Confidence 44444 478888887777788765
No 8
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.71 E-value=1.7e+02 Score=19.55 Aligned_cols=19 Identities=16% Similarity=0.457 Sum_probs=13.5
Q ss_pred CCCCCCCcchhhhhhHhhh
Q 047730 100 IVSTPFTRQENTIIQTCAT 118 (673)
Q Consensus 100 lnpgpf~~kE~~liq~~as 118 (673)
|+.||||..|-..+.-...
T Consensus 1 l~rg~WT~eED~~L~~~v~ 19 (52)
T d1gvda_ 1 LIKGPWTKEEDQRLIKLVQ 19 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 4678888888877655444
No 9
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=3.27 E-value=3.5e+02 Score=22.51 Aligned_cols=29 Identities=7% Similarity=0.145 Sum_probs=23.0
Q ss_pred hhhhccCCChhhHHHHHHHHHHHHHhHHH
Q 047730 492 KTGHLTLTSPRSMLLSQAIGTAIGCVVAP 520 (673)
Q Consensus 492 K~G~y~~~pPr~~f~~QliG~ivga~v~~ 520 (673)
++-.+.+.|.|...++|++|.+-+..-..
T Consensus 127 ~i~~la~LPs~eel~a~l~~~L~ap~~~l 155 (177)
T d1zava1 127 EVENIAKLPSKEELYAMLVGRVKAPITGL 155 (177)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhHHHHH
Confidence 34467789999999999999997766543
No 10
>g3bzy.1 d.367.1.1 (A:246-262,B:263-345) Type III secretion proteins EscU {Escherichia coli [TaxId: 562]}
Probab=3.07 E-value=2.3e+02 Score=21.84 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=14.7
Q ss_pred hHHHHHHhhhc--chhhHHHHH
Q 047730 6 SEEMRDIARVN--PVIEEMELE 25 (673)
Q Consensus 6 ~~~~~~~~~~~--~~~~~~~~~ 25 (673)
.+.+|++|+-+ |++|.-+|-
T Consensus 46 A~~I~~~A~e~gIPi~~d~~LA 67 (100)
T g3bzy.1 46 ALQIIKLAELYDIPVIEDIPLA 67 (100)
T ss_dssp HHHHHHHHHHTTCCEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEECHHHH
Confidence 47899999877 667776554
Done!