BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047732
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CG15|CTF8_MOUSE Chromosome transmission fidelity protein 8 homolog OS=Mus musculus
GN=Chtf8 PE=2 SV=1
Length = 121
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 9 CGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYHELTGSKVP 68
GAE EW ++ELQG E++ + L ++G+L +++ VG+H L G +
Sbjct: 9 TGAEGLAEWVLMELQG--EIEARYSTGLAGNLLGDLHY-TTEGIPVLIVGHHILYGKTIH 65
Query: 69 LKKPLLVLKKVKCMDVDQSCE--GSSAGTDLEVVGIIRHRILFNTRPQALISSTSK 122
L+KP VL VK Q C+ G GT V +I+++ILF TRP+ +I++ K
Sbjct: 66 LEKPFAVL--VKHTPGKQDCDEPGRGTGTQYLVTALIKNKILFKTRPKPIITNVPK 119
>sp|P0C6T1|CTF8_RAT Chromosome transmission fidelity protein 8 homolog OS=Rattus
norvegicus GN=Chtf8 PE=3 SV=1
Length = 121
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 9 CGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYHELTGSKVP 68
GAE EW ++ELQG E++ + L ++G+L +++ VG+H L G +
Sbjct: 9 TGAEGLAEWVLMELQG--EIEARYSTGLAGNLLGDL-HYTTEGIPVLIVGHHILYGKIIH 65
Query: 69 LKKPLLVLKKVKCMDVDQSCE--GSSAGTDLEVVGIIRHRILFNTRPQALISSTSK 122
L+KP VL VK Q C+ G GT V +I+++ILF TRP+ +I++ K
Sbjct: 66 LEKPFAVL--VKHTPGKQDCDELGRETGTQYLVTALIKNKILFKTRPKPIITNVPK 119
>sp|P0CG13|CTF8_HUMAN Chromosome transmission fidelity protein 8 homolog OS=Homo sapiens
GN=CHTF8 PE=1 SV=1
Length = 121
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 11 AESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYHELTGSKVPLK 70
A EW ++ELQG E++ + L ++G+L +++ VG+H L G + L+
Sbjct: 11 AGGLAEWVLMELQG--EIEARYSTGLAGNLLGDL-HYTTEGIPVLIVGHHILYGKIIHLE 67
Query: 71 KPLLVLKKVKCMDVDQSCE--GSSAGTDLEVVGIIRHRILFNTRPQALISSTSK 122
KP VL VK DQ C+ G GT V +I+ +ILF TRP+ +I+S K
Sbjct: 68 KPFAVL--VKHTPGDQDCDELGRETGTRYLVTALIKDKILFKTRPKPIITSVPK 119
>sp|P0CG11|CTF8_BOVIN Chromosome transmission fidelity protein 8 homolog OS=Bos taurus
GN=CHTF8 PE=3 SV=1
Length = 121
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 9 CGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCRPSSQESYTFTVGYHELTGSKVP 68
GA EW ++ELQG +E + S L ++G+L +++ VG+H L G +
Sbjct: 9 AGAGGLAEWVLMELQGEIEARHS--TGLAGNLLGDL-HYTTEGIPVLIVGHHILYGKIIH 65
Query: 69 LKKPLLVLKKVKCMDVDQSCE--GSSAGTDLEVVGIIRHRILFNTRPQALISSTSK 122
L+KP VL VK +Q C+ G +GT V +I+++ILF TRP+ +I++ K
Sbjct: 66 LEKPFAVL--VKHTPGEQDCDELGCESGTRYLVTALIKNKILFKTRPKPIITNVPK 119
>sp|Q54JL4|Y7715_DICDI Putative uncharacterized protein DDB_G0287975 OS=Dictyostelium
discoideum GN=DDB_G0287975 PE=4 SV=1
Length = 166
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 24/137 (17%)
Query: 1 MQIRIKCGCGAESCREWAIIELQGFVEVQPSFQDRLQNLVIGELCR-PSSQESYTFTVGY 59
MQI IK +EW I++LQG +E + L+N +G L + P++++ ++F +G
Sbjct: 1 MQIFIKESTNK---KEWFILDLQGHLE----YTGDLKNETLGILTKKPNTKDDFSFQIGN 53
Query: 60 HELTGSKVPLKKPLLVL-----------KKVKCMDVDQSCEGSSAGTDLEV----VGIIR 104
L G +VPLKKPLLV+ M VD + D EV GI
Sbjct: 54 SVLVGKRVPLKKPLLVIKKSKLNNNNNSNNNNKMAVDNK-DNKDNEKDKEVEYSIEGICN 112
Query: 105 HRILFNTRPQALISSTS 121
+I F TRP I +S
Sbjct: 113 DKIQFTTRPTTFIPQSS 129
>sp|Q65ZA6|CTF8_SCHPO Chromosome transmission fidelity protein 8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ctf8 PE=1 SV=1
Length = 109
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 25 FVEVQPSFQDRLQNLVIGELC----RPSSQESYTFTVGYHELTGSKVPLKKPLLVLKKVK 80
VEVQ + + + +L IG+L + S ++ T TVG + G LKKPL VL+K
Sbjct: 16 LVEVQATLERKADSLHIGDLKIIKEKNSEKKKATLTVGNQYMEGVVESLKKPLAVLQKTN 75
Query: 81 CMDVDQSCEGSSAGTDLEVVGIIRHRILFNTRP 113
VD SS +L+ IIR RI F++RP
Sbjct: 76 ADPVDVY---SSPSHELKCCSIIRERIRFSSRP 105
>sp|P46798|DNAA_THEMA Chromosomal replication initiator protein DnaA OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=dnaA PE=1 SV=1
Length = 440
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 12/61 (19%)
Query: 59 YHELTGSKVPLKKPLLVLK------KVKCMD-VDQSCEGSSAGTDLEVVGIIRHRILFNT 111
Y E TG +V LK+ +L+LK +VK MD +D+ E + +V G+ R IL N+
Sbjct: 312 YKETTGKEVDLKEAILLLKDFIKPNRVKAMDPIDELIEIVA-----KVTGVPREEILSNS 366
Query: 112 R 112
R
Sbjct: 367 R 367
>sp|Q7Z736|PKHH3_HUMAN Pleckstrin homology domain-containing family H member 3 OS=Homo
sapiens GN=PLEKHH3 PE=1 SV=2
Length = 793
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 44 LCRPSSQESYTFTVGYHELTGSKVPLKKPLLVLKKVKCMDVDQSCEGSSAGTDLEVVGII 103
LC P E+ + V E+ SK PL+ P +L + D+ +SC D E V +I
Sbjct: 179 LCSPRQAEAERWGVALREVIASKAPLETPTQLLLR----DIQESC------GDPEAVALI 228
Query: 104 --RHRILFNT 111
R+ IL +T
Sbjct: 229 YLRNPILRHT 238
>sp|Q8VCE9|PKHH3_MOUSE Pleckstrin homology domain-containing family H member 3 OS=Mus
musculus GN=Plekhh3 PE=2 SV=1
Length = 796
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 44 LCRPSSQESYTFTVGYHELTGSKVPLKKPLLVLKKVKCMDVDQSCEGSSAGTDLEVVGII 103
LC P E+ + V E+ SK PL+ P +L + D+ +SC D E V +I
Sbjct: 179 LCSPRQAEAERWGVALREVIASKAPLETPTQLLLR----DIQESC------GDPEAVALI 228
Query: 104 --RHRILFNT 111
R+ IL +T
Sbjct: 229 YRRNPILRHT 238
>sp|B1LC08|DNAA_THESQ Chromosomal replication initiator protein DnaA OS=Thermotoga sp.
(strain RQ2) GN=dnaA PE=3 SV=1
Length = 440
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 12/61 (19%)
Query: 59 YHELTGSKVPLKKPLLVLK------KVKCMD-VDQSCEGSSAGTDLEVVGIIRHRILFNT 111
Y E TG +V LK+ +L+LK +VK MD +D+ E + +V G R IL N+
Sbjct: 312 YKETTGKEVDLKEAILLLKDFIKSNRVKAMDPIDELIEIVA-----KVTGASREEILSNS 366
Query: 112 R 112
R
Sbjct: 367 R 367
>sp|A5IIK7|DNAA_THEP1 Chromosomal replication initiator protein DnaA OS=Thermotoga
petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
GN=dnaA PE=3 SV=1
Length = 440
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 12/61 (19%)
Query: 59 YHELTGSKVPLKKPLLVLK------KVKCMD-VDQSCEGSSAGTDLEVVGIIRHRILFNT 111
Y E TG +V L++ +L+LK +VK MD +D+ E + +V G+ R IL N
Sbjct: 312 YKETTGKEVDLREAILLLKDFIKPNRVKAMDPIDELIEIVA-----KVTGVSREEILSNN 366
Query: 112 R 112
R
Sbjct: 367 R 367
>sp|Q3B7L1|PKHH3_RAT Pleckstrin homology domain-containing family H member 3 OS=Rattus
norvegicus GN=Plekhh3 PE=2 SV=1
Length = 791
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 44 LCRPSSQESYTFTVGYHELTGSKVPLKKPLLVLKKVKCMDVDQSCEGSSAGTDLEVVGII 103
LC P E+ + V E+ SK PL+ P +L + D+ +S G D E V +I
Sbjct: 179 LCSPRQAEAERWGVALREVIASKAPLETPTQLLLR----DIQES------GGDPEAVALI 228
Query: 104 --RHRILFNT 111
R+ IL +T
Sbjct: 229 YRRNPILRHT 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,360,141
Number of Sequences: 539616
Number of extensions: 1732409
Number of successful extensions: 3077
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3060
Number of HSP's gapped (non-prelim): 18
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)