Query 047732
Match_columns 128
No_of_seqs 102 out of 184
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 03:50:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_L DNA-directed RNA polyme 23.1 26 0.0009 22.0 0.9 15 103-117 44-58 (63)
2 4ayb_N DNA-directed RNA polyme 22.0 11 0.00039 24.1 -1.1 7 1-7 1-7 (66)
3 1qw2_A Conserved hypothetical 16.3 2E+02 0.0068 19.6 4.2 27 54-80 12-39 (102)
4 1twf_L ABC10-alpha, DNA-direct 16.3 46 0.0016 21.1 0.9 15 103-117 51-65 (70)
5 2rso_A Chromatin-associated pr 14.3 97 0.0033 20.3 2.1 17 92-108 26-42 (92)
6 4hyl_A Stage II sporulation pr 13.1 2E+02 0.0069 18.1 3.5 24 1-30 4-27 (117)
7 3g7l_A Chromo domain-containin 11.6 1.7E+02 0.0058 17.4 2.5 16 93-108 4-19 (61)
8 3oiz_A Antisigma-factor antago 11.6 2.3E+02 0.0078 17.8 3.3 14 16-29 16-29 (99)
9 2rsn_A Chromo domain-containin 11.5 2.1E+02 0.0072 17.9 3.0 18 91-108 16-33 (75)
10 1twf_J DNA-directed RNA polyme 10.2 35 0.0012 22.0 -1.1 8 1-8 1-8 (70)
No 1
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.11 E-value=26 Score=22.03 Aligned_cols=15 Identities=20% Similarity=0.698 Sum_probs=12.1
Q ss_pred eeeeeecCCCCcccc
Q 047732 103 IRHRILFNTRPQALI 117 (128)
Q Consensus 103 Ir~KiiFk~RP~PIi 117 (128)
.-++|+||.||+-++
T Consensus 44 CG~RILyK~Rt~r~~ 58 (63)
T 3h0g_L 44 CGHRVMYKMRTKRMV 58 (63)
T ss_dssp SCCCCCBCCCCCCCE
T ss_pred CCcEEEEEecCCceE
Confidence 458999999998554
No 2
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=22.00 E-value=11 Score=24.12 Aligned_cols=7 Identities=57% Similarity=1.170 Sum_probs=5.6
Q ss_pred CeEEEEc
Q 047732 1 MQIRIKC 7 (128)
Q Consensus 1 M~i~i~~ 7 (128)
|+|||+|
T Consensus 1 MiIPVRC 7 (66)
T 4ayb_N 1 MMIPIRC 7 (66)
T ss_dssp CCCCSBC
T ss_pred CCCCccc
Confidence 7888887
No 3
>1qw2_A Conserved hypothetical protein TA1206; structural genomics, beta/alpha, antiparallel beta sandwich, protein structure initiative; 1.50A {Thermoplasma acidophilum} SCOP: d.249.1.1
Probab=16.32 E-value=2e+02 Score=19.63 Aligned_cols=27 Identities=30% Similarity=0.317 Sum_probs=21.9
Q ss_pred EEEEceEEEEEeEeccC-CCeEEEEEee
Q 047732 54 TFTVGYHELTGSKVPLK-KPLLVLKKVK 80 (128)
Q Consensus 54 ~L~IG~h~L~GkvvkL~-kPLaVL~k~~ 80 (128)
.+.|++|...|-.++|+ .||.+++-..
T Consensus 12 ~i~i~g~~~~gi~v~Lpk~~Ll~i~~~k 39 (102)
T 1qw2_A 12 SIEIGGKVYQFFKSDLGNAPLLFIKGSK 39 (102)
T ss_dssp EEEETTEEEEEEEECCSSSCEEEEECSS
T ss_pred EEEECCEEEEEEEEEcCCCcEEEEEeCc
Confidence 47799999999999999 6777766543
No 4
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=16.28 E-value=46 Score=21.14 Aligned_cols=15 Identities=40% Similarity=0.729 Sum_probs=11.8
Q ss_pred eeeeeecCCCCcccc
Q 047732 103 IRHRILFNTRPQALI 117 (128)
Q Consensus 103 Ir~KiiFk~RP~PIi 117 (128)
.-++||+|.||+-++
T Consensus 51 CG~RILyK~R~~r~v 65 (70)
T 1twf_L 51 CGHRILLKARTKRLV 65 (70)
T ss_dssp SCCCCCBCCCCSSCE
T ss_pred CCceEeEecCCCccE
Confidence 457899999998554
No 5
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=14.34 E-value=97 Score=20.31 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=13.5
Q ss_pred CCcceEEEEEeeeeeee
Q 047732 92 SAGTDLEVVGIIRHRIL 108 (128)
Q Consensus 92 ~~~~e~~vv~IIr~Kii 108 (128)
....+|+|..|+.+++.
T Consensus 26 ~~~eey~VE~Il~~r~~ 42 (92)
T 2rso_A 26 EEEDEYVVEKVLKHRMA 42 (92)
T ss_dssp CCCCCCCEEEEEEEEEC
T ss_pred CcCceEEEEEEEEEEee
Confidence 34568999999988864
No 6
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=13.06 E-value=2e+02 Score=18.10 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=18.3
Q ss_pred CeEEEEcCCCCCCCCceEEEEeeeeeecCC
Q 047732 1 MQIRIKCGCGAESCREWAIIELQGFVEVQP 30 (128)
Q Consensus 1 M~i~i~~~~~~~~~~e~~llElQG~Le~~~ 30 (128)
|.|.+.. ..+..++.++|+|....
T Consensus 4 M~i~~~~------~~~~~v~~l~G~ld~~~ 27 (117)
T 4hyl_A 4 TDTQIRT------EQGIDIITLHGHLDTRS 27 (117)
T ss_dssp CEEEEEE------ETTEEEEEEEEEECSSS
T ss_pred cEEEEEE------ECCEEEEEEEeEEcchh
Confidence 7777664 33789999999998654
No 7
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=11.59 E-value=1.7e+02 Score=17.42 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=13.0
Q ss_pred CcceEEEEEeeeeeee
Q 047732 93 AGTDLEVVGIIRHRIL 108 (128)
Q Consensus 93 ~~~e~~vv~IIr~Kii 108 (128)
...+|+|..|+.+++.
T Consensus 4 ~~~ey~VE~Il~~r~~ 19 (61)
T 3g7l_A 4 DADVYEVEDILADRVN 19 (61)
T ss_dssp -CCEEEEEEEEEEEEC
T ss_pred CCcEEEEEEEEEEEEE
Confidence 4678999999998874
No 8
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=11.59 E-value=2.3e+02 Score=17.78 Aligned_cols=14 Identities=14% Similarity=0.081 Sum_probs=12.1
Q ss_pred ceEEEEeeeeeecC
Q 047732 16 EWAIIELQGFVEVQ 29 (128)
Q Consensus 16 e~~llElQG~Le~~ 29 (128)
++.+++++|.|...
T Consensus 16 ~~~v~~l~G~L~f~ 29 (99)
T 3oiz_A 16 RERIYRVEGQLFYA 29 (99)
T ss_dssp SEEEEEEEEEECGG
T ss_pred CEEEEEEeeEEehh
Confidence 59999999999764
No 9
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=11.48 E-value=2.1e+02 Score=17.88 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=14.0
Q ss_pred CCCcceEEEEEeeeeeee
Q 047732 91 SSAGTDLEVVGIIRHRIL 108 (128)
Q Consensus 91 ~~~~~e~~vv~IIr~Kii 108 (128)
+....+|+|..|+.+++.
T Consensus 16 ~~~~e~yeVE~Il~~r~~ 33 (75)
T 2rsn_A 16 ETDADVYEVEDILADRVN 33 (75)
T ss_dssp CCGGGCEEEEEEEEEEEC
T ss_pred CCCCceEEEEEEEEEEEc
Confidence 345678999999988764
No 10
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=10.23 E-value=35 Score=21.98 Aligned_cols=8 Identities=25% Similarity=0.696 Sum_probs=5.7
Q ss_pred CeEEEEcC
Q 047732 1 MQIRIKCG 8 (128)
Q Consensus 1 M~i~i~~~ 8 (128)
|.|||+|-
T Consensus 1 MiiPVRCF 8 (70)
T 1twf_J 1 MIVPVRCF 8 (70)
T ss_dssp CCCCSBCT
T ss_pred CCCCeecC
Confidence 77777773
Done!