Query 047732
Match_columns 128
No_of_seqs 102 out of 184
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 03:51:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047732.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047732hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qw2a_ d.249.1.1 (A:) Hypothe 47.2 12 0.0009 24.2 4.2 29 52-80 10-39 (102)
2 d1twfj_ a.4.11.1 (J:) RNA poly 22.0 5.3 0.00039 24.0 -1.1 7 1-7 1-7 (65)
3 d1d1ra_ d.64.1.1 (A:) YciH {Es 17.3 22 0.0016 21.6 1.1 19 7-27 44-62 (83)
4 d1k3ra1 b.40.4.10 (A:93-163) H 16.0 38 0.0028 20.4 2.0 18 59-76 45-62 (71)
5 d2pi2e1 b.40.4.3 (E:3-117) Rep 12.3 1.5E+02 0.011 18.4 4.4 49 57-105 19-73 (115)
6 d1oj5a_ d.110.3.8 (A:) PAS dom 11.9 63 0.0046 19.3 2.3 21 43-63 87-107 (109)
7 d1cf5a_ d.165.1.1 (A:) Beta-mo 9.5 1.2E+02 0.0086 21.6 3.4 21 3-24 34-54 (249)
8 d1k5ja_ b.121.3.1 (A:) Nucleop 9.2 1.9E+02 0.014 18.0 4.1 49 11-61 40-104 (105)
9 d1vc1a_ c.13.2.1 (A:) Anti-sig 8.9 1.2E+02 0.0087 17.5 2.8 16 15-30 12-27 (110)
10 d1zhva2 d.58.18.8 (A:62-127) H 8.7 78 0.0057 18.2 1.7 15 16-30 1-15 (66)
No 1
>d1qw2a_ d.249.1.1 (A:) Hypothetical protein Ta1206 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=47.21 E-value=12 Score=24.18 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=24.6
Q ss_pred cEEEEEceEEEEEeEeccCC-CeEEEEEee
Q 047732 52 SYTFTVGYHELTGSKVPLKK-PLLVLKKVK 80 (128)
Q Consensus 52 ~~~L~IG~h~L~GkvvkL~k-PLaVL~k~~ 80 (128)
.-.+.|++|.++|-.++|+| ||.+++-..
T Consensus 10 i~~i~i~g~~~~g~~v~Lp~~~Ll~i~~~~ 39 (102)
T d1qw2a_ 10 IDSIEIGGKVYQFFKSDLGNAPLLFIKGSK 39 (102)
T ss_dssp EEEEEETTEEEEEEEECCSSSCEEEEECSS
T ss_pred EEEEEECCEEEEEEEEecCCCcEEEEEcCC
Confidence 34588999999999999999 998887654
No 2
>d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.98 E-value=5.3 Score=24.03 Aligned_cols=7 Identities=29% Similarity=1.042 Sum_probs=5.7
Q ss_pred CeEEEEc
Q 047732 1 MQIRIKC 7 (128)
Q Consensus 1 M~i~i~~ 7 (128)
|+|||+|
T Consensus 1 MiIPVRC 7 (65)
T d1twfj_ 1 MIVPVRC 7 (65)
T ss_dssp CCCCSBC
T ss_pred CCCCccc
Confidence 7888887
No 3
>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
Probab=17.28 E-value=22 Score=21.64 Aligned_cols=19 Identities=42% Similarity=0.985 Sum_probs=11.0
Q ss_pred cCCCCCCCCceEEEEeeeeee
Q 047732 7 CGCGAESCREWAIIELQGFVE 27 (128)
Q Consensus 7 ~~~~~~~~~e~~llElQG~Le 27 (128)
|.|+. +..+. -|||||+.-
T Consensus 44 ~gcGg-svk~~-~I~lQGd~~ 62 (83)
T d1d1ra_ 44 CGCGG-AVKDG-VIEIQGDKR 62 (83)
T ss_dssp SSSCC-BCCSS-CEEECSCCH
T ss_pred hcCCE-EEECC-EEEEeCcHH
Confidence 45544 34443 288999863
No 4
>d1k3ra1 b.40.4.10 (A:93-163) Hypothetical protein MTH1 (MT0001), insert domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=15.95 E-value=38 Score=20.36 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=15.8
Q ss_pred eEEEEEeEeccCCCeEEE
Q 047732 59 YHELTGSKVPLKKPLLVL 76 (128)
Q Consensus 59 ~h~L~GkvvkL~kPLaVL 76 (128)
++|++=+++++++||.|-
T Consensus 45 ~~r~tfrIvs~~~pl~Ve 62 (71)
T d1k3ra1 45 NRIMSFRVVRLGKEILIE 62 (71)
T ss_dssp SCEEEEEEEECSSSCEEE
T ss_pred CcEEEEEEEEcCCceEee
Confidence 468889999999999885
No 5
>d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.32 E-value=1.5e+02 Score=18.38 Aligned_cols=49 Identities=12% Similarity=0.088 Sum_probs=24.8
Q ss_pred EceE-EEEEeEeccCCC--eEEEEEeecCCC---CcccCCCCCcceEEEEEeeee
Q 047732 57 VGYH-ELTGSKVPLKKP--LLVLKKVKCMDV---DQSCEGSSAGTDLEVVGIIRH 105 (128)
Q Consensus 57 IG~h-~L~GkvvkL~kP--LaVL~k~~~~~~---~~~~~~~~~~~e~~vv~IIr~ 105 (128)
+|.. ++.|||.+++.. .++++-.+...- -+....+..+.-+||++.+.-
T Consensus 19 ~Gk~V~ivGkV~~v~~~g~~~~~~s~D~~~V~v~l~~~~~~~~~~~vEViG~V~~ 73 (115)
T d2pi2e1 19 IDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEVVGRVTA 73 (115)
T ss_dssp TTCEEEEEEEEEEECTTSSEEEEECTTSCEEEEECSSCCSSCCCSEEEEEEEECT
T ss_pred CCCeEEEEEEEEEEcCCCCEEEEEcCCCCEEEEEeCCCCCCccCCeEEEEEEECC
Confidence 3443 777888888654 344433221100 000112234567999998753
No 6
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.93 E-value=63 Score=19.25 Aligned_cols=21 Identities=33% Similarity=0.705 Sum_probs=11.3
Q ss_pred eeeccCCCCcEEEEEceEEEE
Q 047732 43 ELCRPSSQESYTFTVGYHELT 63 (128)
Q Consensus 43 ~L~~~~~~~~~~L~IG~h~L~ 63 (128)
.+..+..++.+-++||.|.+.
T Consensus 87 ~~~~~~~~~~~~~Ii~~h~i~ 107 (109)
T d1oj5a_ 87 KLCYPQSPDMQPFIMGIHIID 107 (109)
T ss_dssp EEECC----CCCEEEEEEEEE
T ss_pred EEEECCCCCcccEEEEEEEEe
Confidence 333344466777889988763
No 7
>d1cf5a_ d.165.1.1 (A:) Beta-momorcharin {Bitter gourd (Momordica charantia) [TaxId: 3673]}
Probab=9.54 E-value=1.2e+02 Score=21.58 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=14.9
Q ss_pred EEEEcCCCCCCCCceEEEEeee
Q 047732 3 IRIKCGCGAESCREWAIIELQG 24 (128)
Q Consensus 3 i~i~~~~~~~~~~e~~llElQG 24 (128)
||+-..... .+..|.+|+|+|
T Consensus 34 iPvL~~~~~-~~~rf~lV~L~~ 54 (249)
T d1cf5a_ 34 IPLLYSTIS-DSRRFILLNLTS 54 (249)
T ss_dssp EEEECSSCC-TTSSEEEEEEEC
T ss_pred cceeCCCCC-CCceEEEEEEEc
Confidence 677654322 367899999987
No 8
>d1k5ja_ b.121.3.1 (A:) Nucleoplasmin core {Xenopus laevis [TaxId: 8355]}
Probab=9.22 E-value=1.9e+02 Score=18.00 Aligned_cols=49 Identities=12% Similarity=0.088 Sum_probs=26.3
Q ss_pred CCCCCceEEEEeeeeeecCCCc---------cccccceeeeeeeccC-------CCCcEEEEEceEE
Q 047732 11 AESCREWAIIELQGFVEVQPSF---------QDRLQNLVIGELCRPS-------SQESYTFTVGYHE 61 (128)
Q Consensus 11 ~~~~~e~~llElQG~Le~~~~~---------~~~~~~~~iG~L~~~~-------~~~~~~L~IG~h~ 61 (128)
+++..|.-+||+... ..... .+...-..+|.+.+.. .++-|+.+.|+|.
T Consensus 40 ~~AKdE~nvVEv~~~--~~~~~i~vpiA~Lk~s~~p~vsl~~~e~~pPVtF~L~~GsGPVhisGqHl 104 (105)
T d1k5ja_ 40 DKAKDEFHIVEIVTQ--EEGAEKSVPIATLKPSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHV 104 (105)
T ss_dssp TTSCSSCEEEEEEEC--CC---EEEEEEEEBTTTBCEEECCSCEECSCEEEEEEECCCCEEEEEEEE
T ss_pred CCccCcceEEEEeeC--CCCCceEEEEEEeeccccccEEcCCceeCCCeEEEEecCCCCEEEeeEec
Confidence 334679999998642 11110 0123333455555422 2556888888885
No 9
>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}
Probab=8.87 E-value=1.2e+02 Score=17.51 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.5
Q ss_pred CceEEEEeeeeeecCC
Q 047732 15 REWAIIELQGFVEVQP 30 (128)
Q Consensus 15 ~e~~llElQG~Le~~~ 30 (128)
.++.+|.++|.|....
T Consensus 12 ~~~~vv~l~G~l~~~~ 27 (110)
T d1vc1a_ 12 DDKAIVRVQGDIDAYN 27 (110)
T ss_dssp TTEEEEEEESCBSTTT
T ss_pred CCEEEEEEEEEEEhHH
Confidence 4899999999997654
No 10
>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=8.70 E-value=78 Score=18.20 Aligned_cols=15 Identities=20% Similarity=0.528 Sum_probs=12.2
Q ss_pred ceEEEEeeeeeecCC
Q 047732 16 EWAIIELQGFVEVQP 30 (128)
Q Consensus 16 e~~llElQG~Le~~~ 30 (128)
||..+.++|.+....
T Consensus 1 GWr~l~v~g~l~l~~ 15 (66)
T d1zhva2 1 GWSCFKFQGPFAFDE 15 (66)
T ss_dssp EEEEEEECSCCCCSS
T ss_pred CeEEEEEccCCCchh
Confidence 699999999877654
Done!