BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047733
(508 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 20/167 (11%)
Query: 27 VPPTSWPDKD-ALKVCTAISLKNSNISELPQVFE-CPQLKYFHIANDPSRRIPVHIANDP 84
VP +PD+ L ++ + + ELP + L+ +A +P R +P IA+
Sbjct: 91 VPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIAS-- 148
Query: 85 SRRIPDKFFTGMRELRVLDFARMHLLPLP-------SSLRLFQNLQTLSLDYCELGDI-A 136
+REL + + LP P + NLQ+L L++ + + A
Sbjct: 149 --------LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA 200
Query: 137 IVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPP 183
+ +L+ L L +R S + L I L L LDL C L+ PP
Sbjct: 201 SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 114 SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLS 173
++L + L L+LD CEL + + G L L L L + ++ L L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 174 NCFN-LKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN-------- 224
FN L +P + L +L+ELY+ + + G + + L NN
Sbjct: 109 --FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 225 -LSKLTSLEILIEDEK---TLPRDLSFFKMLQRYSILIGDQW 262
L+ L +L+ L+ E T+P+ F L ++ L G+ W
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPKGF-FGSHLLPFAFLHGNPW 207
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 114 SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLS 173
++L + L L+LD CEL + + G L L L L + ++ L L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 174 NCFN-LKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN-------- 224
FN L +P + L +L+ELY+ + + G + + L NN
Sbjct: 109 --FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 225 -LSKLTSLEILIEDEK---TLPRDLSFFKMLQRYSILIGDQW 262
L+ L +L+ L+ E T+P+ F L ++ L G+ W
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPKGF-FGSHLLPFAFLHGNPW 207
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 114 SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLS 173
++L + L L+LD CEL + + G L L L L + ++ L L L +LD+S
Sbjct: 50 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 109
Query: 174 NCFN-LKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN-------- 224
FN L +P + L +L+ELY+ + + G + + L NN
Sbjct: 110 --FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 167
Query: 225 -LSKLTSLEILIEDEK---TLPRDLSFFKMLQRYSILIGDQW 262
L+ L +L+ L+ E T+P+ F L ++ L G+ W
Sbjct: 168 LLNGLENLDTLLLQENSLYTIPKGF-FGSHLLPFAFLHGNPW 208
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 4/127 (3%)
Query: 80 IANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS--SLRLFQNLQTLSLDYCELGDIAI 137
+ N+P IP F + LR LD + L S + NL+ L+L C L DI
Sbjct: 114 LRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN 173
Query: 138 VGDLKTLVILTLRGSDMEKLVEEIGQ-LTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196
+ L L L L G+ ++ + Q LT LR L L + + I N L LEEL
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA-QVATIERNAFDDLKSLEELN 232
Query: 197 IGESPIM 203
+ + +M
Sbjct: 233 LSHNNLM 239
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 114 SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLS 173
++L + L L+LD CEL + + G L L L L + ++ L L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 174 NCFN-LKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN-------- 224
FN L +P + L +L+ELY+ + + G + + L NN
Sbjct: 109 --FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166
Query: 225 -LSKLTSLEILIEDEK---TLPRDLSFFKMLQRYSILIGDQW 262
L+ L +L+ L+ E T+P+ F L ++ L G+ W
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPKGF-FGSHLLPFAFLHGNPW 207
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 4/127 (3%)
Query: 80 IANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS--SLRLFQNLQTLSLDYCELGDIAI 137
+ N+P IP F + LR LD + L S + NL+ L+L C L DI
Sbjct: 114 LRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN 173
Query: 138 VGDLKTLVILTLRGSDMEKLVEEIGQ-LTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196
+ L L L L G+ ++ + Q LT LR L L + + I N L LEEL
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA-QVATIERNAFDDLKSLEELN 232
Query: 197 IGESPIM 203
+ + +M
Sbjct: 233 LSHNNLM 239
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 114 SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLS 173
++L + L L+LD CEL + + G L L L L + ++ L L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 174 NCFN-LKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN-------- 224
FN L +P + L +L+ELY+ + + G + + L NN
Sbjct: 109 --FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 225 -LSKLTSLEILIEDEK---TLPRDLSFFKMLQRYSILIGDQW 262
L+ L +L+ L+ E T+P+ F L ++ L G+ W
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPKGF-FGSHLLPFAFLHGNPW 207
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 114 SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLS 173
++L + L L+LD CEL + + G L L L L + ++ L L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 174 NCFN-LKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN-------- 224
FN L +P + L +L+ELY+ + + G + + L NN
Sbjct: 109 --FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAG 166
Query: 225 -LSKLTSLEILIEDEK---TLPRDLSFFKMLQRYSILIGDQW 262
L+ L +L+ L+ E T+P+ F L ++ L G+ W
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPKGF-FGSHLLPFAFLHGNPW 207
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 114 SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLS 173
++L + L L+LD CEL + + G L L L L + ++ L L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 174 NCFN-LKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN-------- 224
FN L +P + L +L+ELY+ + + G + + L NN
Sbjct: 109 --FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAG 166
Query: 225 -LSKLTSLEILIEDEK---TLPRDLSFFKMLQRYSILIGDQW 262
L+ L +L+ L+ E T+P+ F L ++ L G+ W
Sbjct: 167 LLNGLENLDTLLLQENSLYTIPKGF-FGSHLLPFAFLHGNPW 207
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 56 QVFECPQLKYFHIAND-PSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-P 113
V +C LK HI +D PS +++ ++ RR+P FT +L +LD + L P
Sbjct: 7 NVADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP 66
Query: 114 SSLRLFQNLQTLSLDYCELGDIA 136
++ L+ L+L + EL I+
Sbjct: 67 ELCQILPLLKVLNLQHNELSQIS 89
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Query: 116 LRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNC 175
++ NL L L ++ D+A + +L + L L G+ ++ V I L ++ LDL++
Sbjct: 59 VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTST 117
Query: 176 FNLKVIPPNVISSLSQLEELYIGESPIM-WGKVGGVD-------GEGRNASLDELNNLSK 227
V P ++ LS L+ LY+ + I + G+ G + + L L NLSK
Sbjct: 118 QITDVTP---LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK 174
Query: 228 LTSLE 232
LT+L+
Sbjct: 175 LTTLK 179
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 32/157 (20%)
Query: 80 IANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS--SLRLFQNLQTLSLDYCELGDIAI 137
+ N+P IP F + LR LD + L S + NL+ L+L C L +I
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202
Query: 138 VGDLKTLVILTLRGSDMEKLVEEIGQ-LTHLRLLDL---------SNCF----------- 176
+ L L L L G+ + + Q L HL+ L + N F
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262
Query: 177 ---NLKVIPPNVISSLSQLEELYIGESP------IMW 204
NL ++P ++ + L LE +++ +P I+W
Sbjct: 263 AHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILW 299
>pdb|3LOC|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
Ycdc
pdb|3LOC|B Chain B, Crystal Structure Of Putative Transcriptional Regulator
Ycdc
pdb|3LOC|C Chain C, Crystal Structure Of Putative Transcriptional Regulator
Ycdc
pdb|3LOC|D Chain D, Crystal Structure Of Putative Transcriptional Regulator
Ycdc
Length = 212
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 16/90 (17%)
Query: 299 KELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESL 358
K+ L +LD S +G HG Q+ L V +NLL FP E+L
Sbjct: 20 KKAILSAALDTFSQ-FGFHGTRLEQIAELAGVSKTNLLYY-------------FPSKEAL 65
Query: 359 FLRDLRNLEKICRGPLAA--ESFCQLRDMR 386
++ LR + I PL A E F L ++
Sbjct: 66 YIAVLRQILDIWLAPLKAFREDFAPLAAIK 95
>pdb|2ZS6|B Chain B, Ha3 Subcomponent Of Botulinum Type C Progenitor Toxin
pdb|4EN6|B Chain B, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
Clostridium Botulinum Type C Progenitor Toxin In Complex
With Alpha 2-3-Sialyllactose
pdb|4EN7|B Chain B, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
Clostridium Botulinum Type C Progenitor Toxin In Complex
With Alpha 2-3-Sialyllactosamine
pdb|4EN8|B Chain B, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
Clostridium Botulinum Type C Progenitor Toxin In Complex
With Alpha 2-6-Sialyllactose
pdb|4EN9|B Chain B, Crystal Structure Of Ha70 (Ha3) Subcomponent Of
Clostridium Botulinum Type C Progenitor Toxin In Complex
With Alpha 2-6-Sialyllactosamine
Length = 420
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 354 VLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNG-CDKLKNVFPLVIGRGLQQLQFIE 412
+ S+F RN + I ES + +N D L NV P+ + G + ++
Sbjct: 344 IASSIFSFRTRNNQGIGTLYRLTESINGYNLITINNYSDLLNNVEPISLLNGATYIFRVK 403
Query: 413 VTECQNLDVIFAAERG 428
VTE N ++IF A R
Sbjct: 404 VTELNNYNIIFDAYRN 419
>pdb|2ZOE|B Chain B, Ha3 Subcomponent Of Clostridium Botulinum Type C
Progenitor Toxin, Complex With N-Acetylneuramic Acid
Length = 420
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 354 VLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNG-CDKLKNVFPLVIGRGLQQLQFIE 412
+ S+F RN + I ES + +N D L NV P+ + G + ++
Sbjct: 344 IASSIFSFRTRNNQGIGTLYRLTESINGYNLITINNYSDLLNNVEPISLLNGATYIFRVK 403
Query: 413 VTECQNLDVIFAAERG 428
VTE N ++IF A R
Sbjct: 404 VTELNNYNIIFDAYRN 419
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 22/114 (19%)
Query: 88 IPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVIL 147
+P F + +L VLD L LPS+ +F L LK L +
Sbjct: 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSA--VFDRLV----------------HLKELFMC 120
Query: 148 TLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESP 201
+ +++ + +E + LTHL L + LK IP LS L Y+ +P
Sbjct: 121 CNKLTELPRGIERLTHLTHLAL----DQNQLKSIPHGAFDRLSSLTHAYLFGNP 170
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 43/178 (24%)
Query: 56 QVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVL-------DFARM 107
Q F ECPQL+ +A +H+ + P F + LRVL D +
Sbjct: 393 QAFKECPQLELLDVA-----FTHLHV------KAPHSPFQNLHLLRVLNLSHCLLDTSNQ 441
Query: 108 HLLPLPSSLRLFQNLQTLSLDYCELGD---IAIVGDLKTLVILT-------------LRG 151
HLL LR NLQ S + + +VG L+ L++ + LR
Sbjct: 442 HLLAGLQDLRHL-NLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRN 500
Query: 152 SDMEKLV------EEIGQLTHLRLLDLSNCFN-LKVIPPNVISSLSQLEELYIGESPI 202
+ L + + L+HL+ L L+ N +++IPP+++ +LSQ + + +P+
Sbjct: 501 VNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 29 PTSWPDKDALKVCTAISLKNS--NISE--LPQVFE-CPQLKYFHIANDPSRRIPVHIAND 83
P S+PD D + +C ++ +S NI E +P+V CP + +AN R H+ +
Sbjct: 91 PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTE 150
Query: 84 PSR 86
+R
Sbjct: 151 LAR 153
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 28/140 (20%)
Query: 98 ELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCEL--GDIAIVGDLKTLVILTLRGSDME 155
EL L F R+H+ S + LQ L+L YC L + ++ L L L L+G+ +
Sbjct: 400 ELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQ 459
Query: 156 -------KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVG 208
L++ +G L +L LS+C L I SL GK+
Sbjct: 460 DGTITKTNLLQTVGS---LEVLILSSC-GLLSIDQQAFHSL---------------GKMS 500
Query: 209 GVDGEGRNASLDELNNLSKL 228
VD + + D +++LS L
Sbjct: 501 HVDLSHNSLTCDSIDSLSHL 520
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,568,321
Number of Sequences: 62578
Number of extensions: 609338
Number of successful extensions: 1391
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1358
Number of HSP's gapped (non-prelim): 65
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)