Query 047733
Match_columns 508
No_of_seqs 196 out of 2479
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 02:35:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 4E-26 8.6E-31 254.4 27.3 413 1-482 490-944 (1153)
2 PLN00113 leucine-rich repeat r 99.9 1.7E-26 3.7E-31 256.9 21.4 154 37-203 116-273 (968)
3 PLN00113 leucine-rich repeat r 99.9 2.4E-26 5.2E-31 255.7 21.7 154 37-203 138-297 (968)
4 PLN03210 Resistant to P. syrin 99.9 1E-21 2.2E-26 219.3 21.3 344 88-482 549-907 (1153)
5 KOG4658 Apoptotic ATPase [Sign 99.9 1.4E-21 3.1E-26 207.5 11.1 139 1-152 483-628 (889)
6 KOG0444 Cytoskeletal regulator 99.8 2.8E-23 6E-28 201.2 -4.8 194 37-257 5-205 (1255)
7 KOG4194 Membrane glycoprotein 99.8 2E-21 4.2E-26 187.1 6.0 331 91-482 96-430 (873)
8 KOG0444 Cytoskeletal regulator 99.8 7.5E-23 1.6E-27 198.2 -5.4 349 36-475 29-393 (1255)
9 KOG4194 Membrane glycoprotein 99.8 2.1E-21 4.5E-26 187.0 4.3 210 37-259 76-303 (873)
10 KOG0472 Leucine-rich repeat pr 99.7 8.2E-20 1.8E-24 168.7 -10.4 158 84-258 148-306 (565)
11 KOG0618 Serine/threonine phosp 99.7 1.1E-18 2.4E-23 176.9 -6.2 403 41-502 47-503 (1081)
12 KOG0618 Serine/threonine phosp 99.6 2.2E-18 4.8E-23 174.7 -9.2 378 41-460 23-424 (1081)
13 KOG0617 Ras suppressor protein 99.6 1.3E-17 2.8E-22 136.8 -5.4 150 38-202 32-185 (264)
14 KOG0472 Leucine-rich repeat pr 99.6 1.2E-16 2.7E-21 147.9 -0.2 220 38-260 182-469 (565)
15 KOG0617 Ras suppressor protein 99.6 4.7E-17 1E-21 133.5 -4.8 170 51-248 23-195 (264)
16 PRK15387 E3 ubiquitin-protein 99.4 8.1E-12 1.7E-16 130.9 16.6 132 41-203 203-335 (788)
17 PRK15387 E3 ubiquitin-protein 99.3 1.2E-11 2.5E-16 129.7 12.8 171 36-257 219-390 (788)
18 PRK15370 E3 ubiquitin-protein 99.3 1.1E-11 2.3E-16 130.7 11.8 177 39-258 178-355 (754)
19 KOG4658 Apoptotic ATPase [Sign 99.3 1.7E-12 3.6E-17 138.8 5.7 258 95-397 521-787 (889)
20 PRK15370 E3 ubiquitin-protein 99.3 1.9E-11 4E-16 128.9 10.3 182 36-260 196-378 (754)
21 KOG4341 F-box protein containi 99.3 9.7E-14 2.1E-18 129.7 -6.1 81 121-201 139-227 (483)
22 KOG4341 F-box protein containi 99.2 2.1E-13 4.5E-18 127.5 -6.5 295 142-482 138-440 (483)
23 PF14580 LRR_9: Leucine-rich r 99.1 1.7E-10 3.6E-15 99.3 6.7 119 40-172 20-147 (175)
24 cd00116 LRR_RI Leucine-rich re 99.1 4.7E-11 1E-15 116.0 3.4 184 38-237 22-232 (319)
25 KOG0532 Leucine-rich repeat (L 99.0 1.1E-11 2.3E-16 120.5 -3.1 192 38-259 74-270 (722)
26 cd00116 LRR_RI Leucine-rich re 99.0 6.4E-11 1.4E-15 115.1 2.2 162 59-237 21-204 (319)
27 PF14580 LRR_9: Leucine-rich r 99.0 2.3E-10 4.9E-15 98.5 3.9 108 94-203 16-126 (175)
28 KOG4237 Extracellular matrix p 99.0 1.1E-10 2.4E-15 108.7 0.0 87 220-331 268-355 (498)
29 KOG4237 Extracellular matrix p 98.9 2.2E-10 4.7E-15 106.8 0.3 249 83-364 77-357 (498)
30 KOG1259 Nischarin, modulator o 98.9 4.5E-10 9.8E-15 101.0 1.0 193 36-243 211-416 (490)
31 KOG1259 Nischarin, modulator o 98.8 5.7E-10 1.2E-14 100.4 -0.3 125 38-176 283-410 (490)
32 COG4886 Leucine-rich repeat (L 98.8 8.4E-09 1.8E-13 103.3 5.5 145 98-258 141-286 (394)
33 COG4886 Leucine-rich repeat (L 98.7 9.7E-09 2.1E-13 102.8 5.2 175 39-242 116-293 (394)
34 KOG3207 Beta-tubulin folding c 98.7 6.7E-09 1.4E-13 98.3 2.3 131 116-257 117-254 (505)
35 KOG0532 Leucine-rich repeat (L 98.7 8.9E-10 1.9E-14 107.4 -3.7 160 83-260 85-245 (722)
36 KOG3207 Beta-tubulin folding c 98.7 5.7E-09 1.2E-13 98.8 1.2 203 38-257 120-334 (505)
37 KOG2120 SCF ubiquitin ligase, 98.5 2.1E-09 4.6E-14 96.7 -5.3 84 143-237 186-271 (419)
38 KOG2120 SCF ubiquitin ligase, 98.5 5.4E-09 1.2E-13 94.2 -4.7 39 294-333 336-374 (419)
39 PF13855 LRR_8: Leucine rich r 98.4 4.3E-07 9.2E-12 64.1 4.2 56 98-153 2-60 (61)
40 KOG0531 Protein phosphatase 1, 98.4 5.5E-08 1.2E-12 97.7 -0.7 187 39-256 72-262 (414)
41 PLN03150 hypothetical protein; 98.3 1.6E-06 3.4E-11 91.4 8.6 82 122-204 420-504 (623)
42 PF13855 LRR_8: Leucine rich r 98.3 5.6E-07 1.2E-11 63.5 3.4 60 61-132 1-61 (61)
43 PLN03150 hypothetical protein; 98.3 2.6E-06 5.7E-11 89.7 8.9 104 98-202 419-527 (623)
44 KOG1909 Ran GTPase-activating 98.2 7.5E-08 1.6E-12 88.9 -3.0 208 37-260 28-281 (382)
45 KOG3665 ZYG-1-like serine/thre 98.1 1.1E-06 2.4E-11 92.3 2.1 59 93-152 169-230 (699)
46 KOG1909 Ran GTPase-activating 98.1 1.1E-06 2.4E-11 81.3 1.4 202 39-260 58-309 (382)
47 KOG2982 Uncharacterized conser 98.1 7.8E-07 1.7E-11 80.5 0.0 208 121-368 46-264 (418)
48 KOG1859 Leucine-rich repeat pr 98.1 3.5E-08 7.6E-13 99.1 -9.5 104 94-201 184-290 (1096)
49 PF12799 LRR_4: Leucine Rich r 98.0 7.3E-06 1.6E-10 53.0 3.9 38 97-134 1-38 (44)
50 KOG0531 Protein phosphatase 1, 97.9 1.6E-06 3.5E-11 87.1 -0.6 170 36-237 92-266 (414)
51 KOG3665 ZYG-1-like serine/thre 97.9 1.1E-05 2.3E-10 85.1 4.9 103 97-201 122-231 (699)
52 KOG1947 Leucine rich repeat pr 97.8 6E-07 1.3E-11 92.5 -6.8 168 295-482 268-441 (482)
53 PF12799 LRR_4: Leucine Rich r 97.8 3.4E-05 7.3E-10 49.9 3.7 38 143-181 2-39 (44)
54 KOG1644 U2-associated snRNP A' 97.8 4.3E-05 9.4E-10 65.6 5.3 62 94-155 61-126 (233)
55 KOG1859 Leucine-rich repeat pr 97.7 1.1E-06 2.4E-11 88.6 -5.4 157 37-203 107-267 (1096)
56 PRK15386 type III secretion pr 97.7 6.8E-05 1.5E-09 72.9 6.8 130 320-479 50-188 (426)
57 KOG1947 Leucine rich repeat pr 97.7 1.8E-06 4E-11 88.9 -4.3 121 295-419 187-308 (482)
58 PRK15386 type III secretion pr 97.7 0.00017 3.6E-09 70.3 8.6 57 406-481 156-213 (426)
59 KOG4579 Leucine-rich repeat (L 97.7 3.4E-06 7.3E-11 67.6 -2.7 108 41-160 29-141 (177)
60 KOG2982 Uncharacterized conser 97.6 3.5E-05 7.7E-10 70.0 3.3 62 164-237 198-260 (418)
61 KOG4579 Leucine-rich repeat (L 97.5 2.1E-05 4.5E-10 63.2 -0.3 83 94-176 50-134 (177)
62 KOG1644 U2-associated snRNP A' 97.5 0.00025 5.5E-09 61.1 5.7 103 40-154 43-152 (233)
63 KOG2123 Uncharacterized conser 97.3 1.6E-05 3.5E-10 71.5 -3.4 82 119-202 18-100 (388)
64 COG5238 RNA1 Ran GTPase-activa 97.3 6.5E-05 1.4E-09 67.5 0.0 191 37-237 28-253 (388)
65 KOG2123 Uncharacterized conser 96.9 0.00011 2.3E-09 66.4 -2.4 100 96-196 18-123 (388)
66 COG5238 RNA1 Ran GTPase-activa 96.8 0.003 6.6E-08 57.1 6.1 160 58-237 89-283 (388)
67 KOG2739 Leucine-rich acidic nu 96.7 0.00096 2.1E-08 60.0 2.3 81 94-174 62-152 (260)
68 KOG3864 Uncharacterized conser 96.0 0.0012 2.6E-08 57.0 -1.0 70 350-421 122-191 (221)
69 KOG2739 Leucine-rich acidic nu 95.9 0.0048 1E-07 55.6 2.4 79 121-201 44-127 (260)
70 PF00560 LRR_1: Leucine Rich R 95.4 0.0075 1.6E-07 32.3 1.1 21 98-118 1-21 (22)
71 PF13306 LRR_5: Leucine rich r 95.1 0.056 1.2E-06 44.3 6.0 62 88-151 26-90 (129)
72 KOG3864 Uncharacterized conser 94.7 0.0042 9.2E-08 53.7 -1.8 43 380-422 125-167 (221)
73 PF13306 LRR_5: Leucine rich r 94.4 0.082 1.8E-06 43.2 5.3 106 88-199 3-112 (129)
74 PF00560 LRR_1: Leucine Rich R 93.9 0.016 3.5E-07 31.0 -0.1 16 144-159 2-17 (22)
75 PF13504 LRR_7: Leucine rich r 92.4 0.096 2.1E-06 25.9 1.5 15 98-112 2-16 (17)
76 smart00367 LRR_CC Leucine-rich 91.2 0.12 2.5E-06 28.9 1.2 19 441-459 1-19 (26)
77 KOG0473 Leucine-rich repeat pr 86.3 0.038 8.2E-07 49.1 -4.7 84 59-155 40-124 (326)
78 smart00367 LRR_CC Leucine-rich 86.1 0.45 9.7E-06 26.5 1.2 19 405-423 1-19 (26)
79 smart00370 LRR Leucine-rich re 82.8 1.2 2.5E-05 24.7 2.0 18 97-114 2-19 (26)
80 smart00369 LRR_TYP Leucine-ric 82.8 1.2 2.5E-05 24.7 2.0 18 97-114 2-19 (26)
81 KOG0473 Leucine-rich repeat pr 78.2 0.078 1.7E-06 47.1 -5.8 83 94-176 39-122 (326)
82 PF13516 LRR_6: Leucine Rich r 62.8 7.6 0.00016 20.8 2.0 14 142-155 2-15 (24)
83 KOG4308 LRR-containing protein 61.3 0.26 5.7E-06 50.1 -7.2 17 115-131 167-183 (478)
84 smart00364 LRR_BAC Leucine-ric 60.3 5.9 0.00013 22.0 1.2 18 97-114 2-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 52.6 11 0.00024 21.0 1.5 14 97-110 2-15 (26)
86 smart00368 LRR_RI Leucine rich 48.4 14 0.0003 20.9 1.5 14 97-110 2-15 (28)
87 PF00220 Hormone_4: Neurohypop 23.0 37 0.0008 13.7 0.4 6 475-480 3-8 (9)
88 KOG3763 mRNA export factor TAP 22.5 67 0.0014 33.0 2.5 12 141-152 243-254 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.95 E-value=4e-26 Score=254.43 Aligned_cols=413 Identities=18% Similarity=0.218 Sum_probs=241.9
Q ss_pred CchhHHHHHHHHhcccc------cEEEEEecCcCCCCCCCCcCCCcccEEEeecCCCCCC--CC--CCCCCCCcEEEcCC
Q 047733 1 MHDVVRDVAISIASRVQ------HVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISEL--PQ--VFECPQLKYFHIAN 70 (508)
Q Consensus 1 mhdl~~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l--~~--~~~~~~L~~L~l~~ 70 (508)
|||++||+|+++++++. .+.+-.+...... .......+++.+++....+.++ .. +..|.+|+.|.+..
T Consensus 490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl--~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~ 567 (1153)
T PLN03210 490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVL--EDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYT 567 (1153)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHH--HhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEec
Confidence 99999999999997753 1111110000000 0001123455565555444322 11 22677777776654
Q ss_pred CCC-------CCCCcc------------cCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCC
Q 047733 71 DPS-------RRIPVH------------IANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCE 131 (508)
Q Consensus 71 ~~~-------~~~~~~------------~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 131 (508)
+.. ..+|.+ ...+....+|..+ .+.+|+.|+++++.+..++..+..+++|++|++++|.
T Consensus 568 ~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~ 645 (1153)
T PLN03210 568 KKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSK 645 (1153)
T ss_pred ccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCC
Confidence 311 011110 0113334444443 3566677777777666666666666777777776665
Q ss_pred -CCCccccCCCCCCcEEEccCC-CchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccC
Q 047733 132 -LGDIAIVGDLKTLVILTLRGS-DMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGG 209 (508)
Q Consensus 132 -l~~~~~i~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 209 (508)
+..++.++.+++|++|++++| .+..+|..+.++++|+.|++++|..+..+|.. ..+++|+.|++++|......
T Consensus 646 ~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~~--- 720 (1153)
T PLN03210 646 NLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCSRLKSF--- 720 (1153)
T ss_pred CcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCCCcccc---
Confidence 444444666677777777665 45566666667777777777766666666653 25666777776666432111
Q ss_pred cCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccc
Q 047733 210 VDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNG 289 (508)
Q Consensus 210 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~ 289 (508)
+. ...+|+.|+++++....+|..+ .+++|+.|.+........... ......
T Consensus 721 ---------p~---~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~----------------~~~l~~ 771 (1153)
T PLN03210 721 ---------PD---ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWER----------------VQPLTP 771 (1153)
T ss_pred ---------cc---ccCCcCeeecCCCccccccccc-cccccccccccccchhhcccc----------------ccccch
Confidence 00 1245666777666665666554 455555555432111000000 000000
Q ss_pred hhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCccccccc
Q 047733 290 GHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKI 369 (508)
Q Consensus 290 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~ 369 (508)
.....+++|+.|++.++.....++.. ..++++|+.|++.+|..++.++. ...+++|+.|.+++|..+..+
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP~--------~~~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSS--IQNLHKLEHLEIENCINLETLPT--------GINLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChh--hhCCCCCCEEECCCCCCcCeeCC--------CCCccccCEEECCCCCccccc
Confidence 11123578999999888766665443 35788999999999888877642 224788999999999877665
Q ss_pred ccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEc
Q 047733 370 CRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILEL 449 (508)
Q Consensus 370 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l 449 (508)
+. ..++|++|++.+. .++.+|. .+..+++|+.|++.+|+++..+. .....+++|+.+++
T Consensus 842 p~------~~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~------------~~~~~L~~L~~L~l 900 (1153)
T PLN03210 842 PD------ISTNISDLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNNLQRVS------------LNISKLKHLETVDF 900 (1153)
T ss_pred cc------cccccCEeECCCC-CCccChH--HHhcCCCCCEEECCCCCCcCccC------------cccccccCCCeeec
Confidence 32 2367888888874 6776653 35778899999999998888764 24456788888899
Q ss_pred CCCccccccccCccc-----------cccCCccEEEEeeCCCcc
Q 047733 450 CYLPQLTSFCTGDLH-----------FEFPSLEKLRILECPQVK 482 (508)
Q Consensus 450 ~~c~~L~~~~~~~~~-----------~~~p~L~~L~i~~C~~l~ 482 (508)
.+|++|+.++..... ..+|+...+.+.+|.++.
T Consensus 901 ~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 901 SDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred CCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 999888766432211 123445556677777664
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=1.7e-26 Score=256.87 Aligned_cols=154 Identities=25% Similarity=0.345 Sum_probs=99.1
Q ss_pred CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCC-CCchh
Q 047733 37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLL-PLPSS 115 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~ 115 (508)
.++++|+|++++|.+.+..+...+++|++|++.+|. ....+|..+ +.+++|++|++++|.+. .+|..
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~-----------~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~ 183 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNM-----------LSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNS 183 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCc-----------ccccCChHH-hcCCCCCEEECccCcccccCChh
Confidence 467899999999988543333568899999998843 223444443 56666666666666654 45666
Q ss_pred hccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCch-hhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCC
Q 047733 116 LRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQL 192 (508)
Q Consensus 116 ~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 192 (508)
++++++|++|++++|.+.. |..++++.+|++|++++|.+. .+|..+.++++|++|++++|.....+|.. ++.+++|
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L 262 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNL 262 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCC
Confidence 6666666666666666553 566666666666666666555 55666666666666666666533344444 5666666
Q ss_pred cEEEeecCCCc
Q 047733 193 EELYIGESPIM 203 (508)
Q Consensus 193 ~~L~l~~~~~~ 203 (508)
+.|++++|.+.
T Consensus 263 ~~L~L~~n~l~ 273 (968)
T PLN00113 263 QYLFLYQNKLS 273 (968)
T ss_pred CEEECcCCeee
Confidence 66666666544
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=2.4e-26 Score=255.73 Aligned_cols=154 Identities=25% Similarity=0.375 Sum_probs=90.6
Q ss_pred CCCcccEEEeecCCCC-CCCCC-CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCC-CCc
Q 047733 37 ALKVCTAISLKNSNIS-ELPQV-FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLL-PLP 113 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~-~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~ 113 (508)
.++++++|++++|.+. .+|.. ..+++|++|++++|.. ...+|..+ .++++|++|++++|.+. .+|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l-----------~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p 205 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL-----------VGKIPNSL-TNLTSLEFLTLASNQLVGQIP 205 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc-----------cccCChhh-hhCcCCCeeeccCCCCcCcCC
Confidence 4678999999999885 45543 3899999999998432 23334433 55556666666655554 345
Q ss_pred hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCch-hhHHHhccCCCCceEeccCCCCCCccChhhhhcCC
Q 047733 114 SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLS 190 (508)
Q Consensus 114 ~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 190 (508)
..++++++|++|++++|.++. |..++++++|++|++++|.+. .+|..+.++++|++|+++.|.....+|.. +..++
T Consensus 206 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~ 284 (968)
T PLN00113 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQ 284 (968)
T ss_pred hHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-Hhhcc
Confidence 555555556666665555443 455555555666665555444 44555555555555555555433334443 45555
Q ss_pred CCcEEEeecCCCc
Q 047733 191 QLEELYIGESPIM 203 (508)
Q Consensus 191 ~L~~L~l~~~~~~ 203 (508)
+|++|++++|.+.
T Consensus 285 ~L~~L~Ls~n~l~ 297 (968)
T PLN00113 285 KLISLDLSDNSLS 297 (968)
T ss_pred CcCEEECcCCeec
Confidence 5555555555443
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1e-21 Score=219.27 Aligned_cols=344 Identities=22% Similarity=0.271 Sum_probs=226.7
Q ss_pred CChhhhhCCCCccEEEecCCcC------C-CCchhhccCc-cccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhH
Q 047733 88 IPDKFFTGMRELRVLDFARMHL------L-PLPSSLRLFQ-NLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLV 158 (508)
Q Consensus 88 ~~~~~~~~l~~L~~L~l~~~~~------~-~l~~~~~~l~-~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp 158 (508)
+....|.++++|+.|.+..+.. . .+|..+..++ +|+.|.+.++.++. |..+ ...+|++|++.++.++.++
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccc
Confidence 4455679999999999976642 1 3677777765 59999999998887 6655 5789999999999999999
Q ss_pred HHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc-
Q 047733 159 EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED- 237 (508)
Q Consensus 159 ~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~- 237 (508)
.++..+++|+.|+++++..+..+|. ++.+++|+.|++.+|.... .++..++.+++|+.|++++|.
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~------------~lp~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV------------ELPSSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc------------ccchhhhccCCCCEEeCCCCCC
Confidence 8888999999999999877888876 6889999999999876432 345678889999999999875
Q ss_pred CccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccc----
Q 047733 238 EKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVL---- 313 (508)
Q Consensus 238 ~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---- 313 (508)
...+|..+ .+++|+.|.+.++......+ ....+++.+.+........+.. ..+++|++|.+.++....-..
T Consensus 694 L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p--~~~~nL~~L~L~~n~i~~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 694 LEILPTGI-NLKSLYRLNLSGCSRLKSFP--DISTNISWLDLDETAIEEFPSN--LRLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred cCccCCcC-CCCCCCEEeCCCCCCccccc--cccCCcCeeecCCCcccccccc--ccccccccccccccchhhccccccc
Confidence 66777665 78889999888765432211 1223344444443322111111 134555555554432110000
Q ss_pred -cCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCC
Q 047733 314 -YGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDK 392 (508)
Q Consensus 314 -~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 392 (508)
........++|+.|++++|+.+..++. ..+.+++|+.|++.+|..++.++.. ..+++|+.|++++|..
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-------si~~L~~L~~L~Ls~C~~L~~LP~~----~~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELPS-------SIQNLHKLEHLEIENCINLETLPTG----INLESLESLDLSGCSR 837 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccCh-------hhhCCCCCCEEECCCCCCcCeeCCC----CCccccCEEECCCCCc
Confidence 000011235566666666554444322 1234566666666666655554321 1356666666666666
Q ss_pred cceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccE
Q 047733 393 LKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEK 472 (508)
Q Consensus 393 l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~ 472 (508)
+..+|. ..++|++|++.+. .++.+ +..+..+++|+.|++.+|++++.++.... .+++|+.
T Consensus 838 L~~~p~-----~~~nL~~L~Ls~n-~i~~i------------P~si~~l~~L~~L~L~~C~~L~~l~~~~~--~L~~L~~ 897 (1153)
T PLN03210 838 LRTFPD-----ISTNISDLNLSRT-GIEEV------------PWWIEKFSNLSFLDMNGCNNLQRVSLNIS--KLKHLET 897 (1153)
T ss_pred cccccc-----cccccCEeECCCC-CCccC------------hHHHhcCCCCCEEECCCCCCcCccCcccc--cccCCCe
Confidence 555432 1345666666553 33333 34566799999999999999999876533 5689999
Q ss_pred EEEeeCCCcc
Q 047733 473 LRILECPQVK 482 (508)
Q Consensus 473 L~i~~C~~l~ 482 (508)
+++++|++++
T Consensus 898 L~l~~C~~L~ 907 (1153)
T PLN03210 898 VDFSDCGALT 907 (1153)
T ss_pred eecCCCcccc
Confidence 9999999876
No 5
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.85 E-value=1.4e-21 Score=207.49 Aligned_cols=139 Identities=29% Similarity=0.411 Sum_probs=93.1
Q ss_pred CchhHHHHHHHHhc-----ccccEEEEEecCcCCCCCCCCcCCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCC
Q 047733 1 MHDVVRDVAISIAS-----RVQHVFAVKNVVVPPTSWPDKDALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRR 75 (508)
Q Consensus 1 mhdl~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~ 75 (508)
|||||||+|.++|+ +|. .+...+.+.. ..|+...+..+|+.++.++.+..++....+++|++|.+.+|..
T Consensus 483 mHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~--~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~-- 557 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEEN-QIVSDGVGLS--EIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD-- 557 (889)
T ss_pred eeHHHHHHHHHHhccccccccc-eEEECCcCcc--ccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecch--
Confidence 99999999999998 666 2222222211 1334455678999999999998888777888999999988210
Q ss_pred CCcccCCCCCCCCChhhhhCCCCccEEEecCCc-CCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCC
Q 047733 76 IPVHIANDPSRRIPDKFFTGMRELRVLDFARMH-LLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGS 152 (508)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~ 152 (508)
-...++..+|..++.|++||+++|. +.++|..++.+.+||+|+++++.++. |.+++++..|++|++..+
T Consensus 558 --------~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 558 --------WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVT 628 (889)
T ss_pred --------hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccc
Confidence 1556777778889999999999753 34566666655555555555555444 444444444444444443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.8e-23 Score=201.19 Aligned_cols=194 Identities=16% Similarity=0.286 Sum_probs=150.1
Q ss_pred CCCcccEEEeecCCC--CCCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 37 ALKVCTAISLKNSNI--SELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~--~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
..+-||-+++++|.+ ..+|... .|+.++.|.+.. ....++|..+ +.+.+|++|.+++|++.++.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr------------t~L~~vPeEL-~~lqkLEHLs~~HN~L~~vh 71 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR------------TKLEQVPEEL-SRLQKLEHLSMAHNQLISVH 71 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEech------------hhhhhChHHH-HHHhhhhhhhhhhhhhHhhh
Confidence 456688889999988 4577655 888999998877 5566777776 78888888888888888777
Q ss_pred hhhccCccccEEeccCCCCCC---ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCC
Q 047733 114 SSLRLFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLS 190 (508)
Q Consensus 114 ~~~~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 190 (508)
..+..++.||.+++++|+++. |..|..+.-|..||++.|.+++.|..+.+-+++-+|++++|+ +..+|...+-++.
T Consensus 72 GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLt 150 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLT 150 (1255)
T ss_pred hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhH
Confidence 778888888888888888664 678888888888888888888888888888888888888877 8888877677888
Q ss_pred CCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC-CCCccCCCccEEEEE
Q 047733 191 QLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP-RDLSFFKMLQRYSIL 257 (508)
Q Consensus 191 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~ 257 (508)
.|-.|++++|.+. .++..+.++.+|+.|.+++|....+. ..+.++++|..|+++
T Consensus 151 DLLfLDLS~NrLe-------------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLE-------------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred hHhhhccccchhh-------------hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence 8888888888765 35566788888888888887643332 223345555555554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=2e-21 Score=187.14 Aligned_cols=331 Identities=17% Similarity=0.201 Sum_probs=140.1
Q ss_pred hhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hccCCCC
Q 047733 91 KFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHL 167 (508)
Q Consensus 91 ~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L 167 (508)
.+|.++++|+.+++..|.++.+|.......+|+.|++.+|.|+. -+.+..++.|+.||++.|.|..+|.. +-.=.++
T Consensus 96 ~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI 175 (873)
T ss_pred HHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence 33444444444444444444444433333344444444444444 13444444444444444444444321 1122344
Q ss_pred ceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCc
Q 047733 168 RLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLS 246 (508)
Q Consensus 168 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~ 246 (508)
++|+|+.|. ++++..+.+..+.+|..|.++.|.++.-. +..+.++++|+.|++..|...-. -..+.
T Consensus 176 ~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp------------~r~Fk~L~~L~~LdLnrN~irive~ltFq 242 (873)
T KOG4194|consen 176 KKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLP------------QRSFKRLPKLESLDLNRNRIRIVEGLTFQ 242 (873)
T ss_pred eEEeecccc-ccccccccccccchheeeecccCcccccC------------HHHhhhcchhhhhhccccceeeehhhhhc
Confidence 444444444 44433333444444444444444443211 12344444444444444432111 01112
Q ss_pred cCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcE
Q 047733 247 FFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKH 326 (508)
Q Consensus 247 ~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 326 (508)
.+++|+.+.+...+ .....+++...+.++++|++... .++.+.... .-++..|+.
T Consensus 243 gL~Sl~nlklqrN~-----------------------I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~-lfgLt~L~~ 297 (873)
T KOG4194|consen 243 GLPSLQNLKLQRND-----------------------ISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGW-LFGLTSLEQ 297 (873)
T ss_pred CchhhhhhhhhhcC-----------------------cccccCcceeeecccceeecccc-hhhhhhccc-ccccchhhh
Confidence 33333333332221 11222333334455555555432 222221111 124555555
Q ss_pred EEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccC
Q 047733 327 LEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQ 406 (508)
Q Consensus 327 L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~ 406 (508)
|+++. +.|..+ +...|. -.++|+.|+++. ++++++..+. ...+..|++|.+++ +++.++... ....+.
T Consensus 298 L~lS~-NaI~ri-h~d~Ws-----ftqkL~~LdLs~-N~i~~l~~~s--f~~L~~Le~LnLs~-Nsi~~l~e~-af~~ls 365 (873)
T KOG4194|consen 298 LDLSY-NAIQRI-HIDSWS-----FTQKLKELDLSS-NRITRLDEGS--FRVLSQLEELNLSH-NSIDHLAEG-AFVGLS 365 (873)
T ss_pred hccch-hhhhee-ecchhh-----hcccceeEeccc-cccccCChhH--HHHHHHhhhhcccc-cchHHHHhh-HHHHhh
Confidence 55555 334332 222232 235566666655 3344432211 12345556666655 245544332 224455
Q ss_pred CCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCCCcc
Q 047733 407 QLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVK 482 (508)
Q Consensus 407 ~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~~l~ 482 (508)
+|++|+++.- .+.-.+... ......+|+|++|.+.|. +|+.++..++. .++.||.|++.+.+-.+
T Consensus 366 sL~~LdLr~N-~ls~~IEDa--------a~~f~gl~~LrkL~l~gN-qlk~I~krAfs-gl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 366 SLHKLDLRSN-ELSWCIEDA--------AVAFNGLPSLRKLRLTGN-QLKSIPKRAFS-GLEALEHLDLGDNAIAS 430 (873)
T ss_pred hhhhhcCcCC-eEEEEEecc--------hhhhccchhhhheeecCc-eeeecchhhhc-cCcccceecCCCCccee
Confidence 6666665431 111000000 223344666666666663 66666555443 45666666666665543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=7.5e-23 Score=198.22 Aligned_cols=349 Identities=20% Similarity=0.271 Sum_probs=185.3
Q ss_pred cCCCcccEEEeecCCCCCCCCC-CCCCCCcEEEcCCCCCCCCCccc-------------CCCCCCCCChhhhhCCCCccE
Q 047733 36 DALKVCTAISLKNSNISELPQV-FECPQLKYFHIANDPSRRIPVHI-------------ANDPSRRIPDKFFTGMRELRV 101 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~L~~ 101 (508)
..|+.++.|-+....+..+|.- ..+.+|+-|.++.|....+...+ .+-...-+|..+| ++..|.+
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~ 107 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTI 107 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-cccccee
Confidence 3455555555555555555432 24555555555543211110000 0112234555553 5666666
Q ss_pred EEecCCcCCCCchhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCC
Q 047733 102 LDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLK 179 (508)
Q Consensus 102 L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~ 179 (508)
||+|+|++.++|..+.+.+++-.|++++|+|.. | ..+.++.-|-+||++.|.++.+|..+.++.+|++|++++|+ +.
T Consensus 108 lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~ 186 (1255)
T KOG0444|consen 108 LDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LN 186 (1255)
T ss_pred eecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hh
Confidence 666666666666666666666666666666655 4 44556666666666666666666666666666666666665 22
Q ss_pred ccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEec
Q 047733 180 VIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIG 259 (508)
Q Consensus 180 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~ 259 (508)
...-.-+..+.+|+.|.+++++.+- ..++..+..+.||+.++++.|....+|..+..+++|+.|++++.
T Consensus 187 hfQLrQLPsmtsL~vLhms~TqRTl-----------~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHMSNTQRTL-----------DNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred HHHHhcCccchhhhhhhcccccchh-----------hcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC
Confidence 2111013344445555555544331 13445556666666666666666666666666666666655432
Q ss_pred CcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeee
Q 047733 260 DQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVV 339 (508)
Q Consensus 260 ~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~ 339 (508)
. +++|.+ ..+.+.+|++|+++. +.++.++
T Consensus 256 ~-------------------------------------iteL~~-------------~~~~W~~lEtLNlSr-NQLt~LP 284 (1255)
T KOG0444|consen 256 K-------------------------------------ITELNM-------------TEGEWENLETLNLSR-NQLTVLP 284 (1255)
T ss_pred c-------------------------------------eeeeec-------------cHHHHhhhhhhcccc-chhccch
Confidence 2 111111 013355666666665 3455443
Q ss_pred ecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccch
Q 047733 340 DTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNL 419 (508)
Q Consensus 340 ~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L 419 (508)
+ ....++.|+.|.+.+. .++- ...+.+++.+-+|+.+...+ +.++-+|. .++.|+.|+.|.+. |+.|
T Consensus 285 ~-------avcKL~kL~kLy~n~N-kL~F-eGiPSGIGKL~~Levf~aan-N~LElVPE--glcRC~kL~kL~L~-~NrL 351 (1255)
T KOG0444|consen 285 D-------AVCKLTKLTKLYANNN-KLTF-EGIPSGIGKLIQLEVFHAAN-NKLELVPE--GLCRCVKLQKLKLD-HNRL 351 (1255)
T ss_pred H-------HHhhhHHHHHHHhccC-cccc-cCCccchhhhhhhHHHHhhc-cccccCch--hhhhhHHHHHhccc-ccce
Confidence 3 1223456666655442 2221 11133445566666666665 34555542 35667777777766 3444
Q ss_pred hhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEE
Q 047733 420 DVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRI 475 (508)
Q Consensus 420 ~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i 475 (508)
-.+ +.++..+|-|+.|++.+.|+|..=|...-+. .+|+.-.|
T Consensus 352 iTL------------PeaIHlL~~l~vLDlreNpnLVMPPKP~da~--~~lefYNI 393 (1255)
T KOG0444|consen 352 ITL------------PEAIHLLPDLKVLDLRENPNLVMPPKPNDAR--KKLEFYNI 393 (1255)
T ss_pred eec------------hhhhhhcCCcceeeccCCcCccCCCCcchhh--hcceeeec
Confidence 444 4566677778888888777776554433222 45555444
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=2.1e-21 Score=186.98 Aligned_cols=210 Identities=18% Similarity=0.270 Sum_probs=114.7
Q ss_pred CCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcc-----------cCCCCCCCCChhhhhCCCCccEEE
Q 047733 37 ALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVH-----------IANDPSRRIPDKFFTGMRELRVLD 103 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~L~~L~ 103 (508)
.+...+.|++++|.+.++.. +.++++|+.+++.+|...++|.. +..+.+..+.....+.++.||.||
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 46678899999999976644 34999999999999776666532 112223333333234455555555
Q ss_pred ecCCcCCCCc-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCC
Q 047733 104 FARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLK 179 (508)
Q Consensus 104 l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~ 179 (508)
++.|.++.+| .+|..-.++++|++++|.|+. ...|..+.+|-.|.+++|.++.+| +.+.++++|+.|+|..|. +.
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-ir 234 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IR 234 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-ee
Confidence 5555555444 233344455555555555554 244555555555555555555555 233445555555555544 33
Q ss_pred ccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC-CCCccCCCccEEEEEe
Q 047733 180 VIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP-RDLSFFKMLQRYSILI 258 (508)
Q Consensus 180 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~~ 258 (508)
.+....+..+++|+.|.+..|.+..... ..+-.+.++++|++..|...++. .|+..++.|+.|+++.
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~D------------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDD------------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccC------------cceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 3333224455555555555555442221 11333445566666666544433 3455666666666654
Q ss_pred c
Q 047733 259 G 259 (508)
Q Consensus 259 ~ 259 (508)
.
T Consensus 303 N 303 (873)
T KOG4194|consen 303 N 303 (873)
T ss_pred h
Confidence 3
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=8.2e-20 Score=168.69 Aligned_cols=158 Identities=22% Similarity=0.303 Sum_probs=87.5
Q ss_pred CCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhc
Q 047733 84 PSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIG 162 (508)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~ 162 (508)
.+..+|.++ ..+.+|..+++.+|++..+|+..-+++.|+.|+...|-+.. |+.++.+.+|..|++..|++..+| .+.
T Consensus 148 ~i~slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~ 225 (565)
T KOG0472|consen 148 QISSLPEDM-VNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFP 225 (565)
T ss_pred ccccCchHH-HHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCC
Confidence 334444444 34555555555555555555444445555555555544444 555555555555555555555555 455
Q ss_pred cCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC
Q 047733 163 QLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP 242 (508)
Q Consensus 163 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 242 (508)
.|..|.++++..|+ +..+|......++++..|++..|++. +.+.++..+++|..|+++.+.....|
T Consensus 226 gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNklk-------------e~Pde~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 226 GCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKLK-------------EVPDEICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred ccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccccc-------------cCchHHHHhhhhhhhcccCCccccCC
Confidence 55555555555544 55555544445666666666665554 45556666666666666666666666
Q ss_pred CCCccCCCccEEEEEe
Q 047733 243 RDLSFFKMLQRYSILI 258 (508)
Q Consensus 243 ~~l~~~~~L~~L~i~~ 258 (508)
..++++ .|+.|.+.+
T Consensus 292 ~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 292 YSLGNL-HLKFLALEG 306 (565)
T ss_pred cccccc-eeeehhhcC
Confidence 666555 555555543
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=1.1e-18 Score=176.88 Aligned_cols=403 Identities=21% Similarity=0.270 Sum_probs=193.8
Q ss_pred ccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccC
Q 047733 41 CTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLF 119 (508)
Q Consensus 41 lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l 119 (508)
+++|++++|.+..+|.-. .+.+|+.|.++.|.++..| .+. .++++|++++|.+|....+|.++..+
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp------------~s~-~~~~~l~~lnL~~n~l~~lP~~~~~l 113 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVP------------SSC-SNMRNLQYLNLKNNRLQSLPASISEL 113 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCc------------hhh-hhhhcchhheeccchhhcCchhHHhh
Confidence 777788877777776533 6777777777775544444 232 55666666666666666666666666
Q ss_pred ccccEEeccCCCCCC-ccccCCCCCCcEEEccCC-------------------Cch-hhHHHhccCCCCceEeccCCCCC
Q 047733 120 QNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGS-------------------DME-KLVEEIGQLTHLRLLDLSNCFNL 178 (508)
Q Consensus 120 ~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~-------------------~i~-~lp~~~~~l~~L~~L~l~~~~~~ 178 (508)
++|++|++++|.+.. |..+..+..+..++.++| .+. .++.++..++. .|+++.|...
T Consensus 114 knl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~ 191 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME 191 (1081)
T ss_pred hcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh
Confidence 666666666665544 433333333333333322 111 22223333333 3555554422
Q ss_pred CccChhhhhc--------------------CCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccC
Q 047733 179 KVIPPNVISS--------------------LSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDE 238 (508)
Q Consensus 179 ~~~~~~~l~~--------------------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 238 (508)
.+. +.. -++|+.|..+.|.++. ......-.+|+.++++.+..
T Consensus 192 -~~d---ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~--------------~~~~p~p~nl~~~dis~n~l 253 (1081)
T KOG0618|consen 192 -VLD---LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTT--------------LDVHPVPLNLQYLDISHNNL 253 (1081)
T ss_pred -hhh---hhhccchhhhhhhhcccceEEecCcchheeeeccCccee--------------eccccccccceeeecchhhh
Confidence 110 112 2334444444444431 11122234667777777776
Q ss_pred ccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcC
Q 047733 239 KTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHG 318 (508)
Q Consensus 239 ~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 318 (508)
..+|.|+..+.+|+.+.................++|+++.+..+..-. .......+++|++|++... ++...+....
T Consensus 254 ~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N-~L~~lp~~~l- 330 (1081)
T KOG0618|consen 254 SNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSN-NLPSLPDNFL- 330 (1081)
T ss_pred hcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhc-cccccchHHH-
Confidence 667777677777776666543322221122222223222222211111 1222234667777777543 3333222110
Q ss_pred CCCC-CCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceec
Q 047733 319 EGFP-QLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVF 397 (508)
Q Consensus 319 ~~~~-~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 397 (508)
.-.. .|+.|..+. ..+.... .+ +...++.|+.|.+.+ +.+++-++ .....+++|+.|++++ .+|..+|
T Consensus 331 ~v~~~~l~~ln~s~-n~l~~lp-----~~-~e~~~~~Lq~Lylan-N~Ltd~c~--p~l~~~~hLKVLhLsy-NrL~~fp 399 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSS-NKLSTLP-----SY-EENNHAALQELYLAN-NHLTDSCF--PVLVNFKHLKVLHLSY-NRLNSFP 399 (1081)
T ss_pred hhhhHHHHHHhhhh-ccccccc-----cc-cchhhHHHHHHHHhc-Ccccccch--hhhccccceeeeeecc-cccccCC
Confidence 1111 133333322 1111111 11 334556666666666 33444332 1234566677777666 3555553
Q ss_pred chhhhhccCCCcEEeeccccchhhhhcc-------c---cCCcCCC-CCCceeeccccCeeEcCCCccccccccCccccc
Q 047733 398 PLVIGRGLQQLQFIEVTECQNLDVIFAA-------E---RGDESSN-SNTQVIELTQLTILELCYLPQLTSFCTGDLHFE 466 (508)
Q Consensus 398 ~~~~~~~l~~L~~L~i~~c~~L~~i~~~-------~---~~~~~~~-~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~ 466 (508)
. +...+++.||+|+++| .+|+.+... + .....-. .+ .+..+|.|+.++++. .+|+.+-... ...
T Consensus 400 a-s~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~-~~p 474 (1081)
T KOG0618|consen 400 A-SKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPE-ALP 474 (1081)
T ss_pred H-HHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEeccc-chhhhhhhhh-hCC
Confidence 3 4456666667776666 334333210 0 0000000 12 334567788888875 4666553222 113
Q ss_pred cCCccEEEEeeCCCcccccccccCCceecCChHHHh
Q 047733 467 FPSLEKLRILECPQVKFKSSIHESTKKVFPNLEYLS 502 (508)
Q Consensus 467 ~p~L~~L~i~~C~~l~~~~~~~~~~~~~~p~l~~L~ 502 (508)
+|.||.|+++|.+++-|. +..||.++.++
T Consensus 475 ~p~LkyLdlSGN~~l~~d-------~~~l~~l~~l~ 503 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTRLVFD-------HKTLKVLKSLS 503 (1081)
T ss_pred CcccceeeccCCcccccc-------hhhhHHhhhhh
Confidence 478888888888876554 23666666665
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=2.2e-18 Score=174.75 Aligned_cols=378 Identities=18% Similarity=0.172 Sum_probs=228.1
Q ss_pred ccEEEeecCCCCCCC--CCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhcc
Q 047733 41 CTAISLKNSNISELP--QVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRL 118 (508)
Q Consensus 41 lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~ 118 (508)
+..|++..|-+-..| ...+.-+|++|+++. +...++|..+ ..+.+|+.|+++.|.+.++|.+..+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsn------------n~~~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~ 89 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSN------------NQISSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSN 89 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccc------------cccccCCchh-hhHHHHhhcccchhhHhhCchhhhh
Confidence 777888877775544 222455699999988 4555666665 7789999999999999999998999
Q ss_pred CccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChh-------------
Q 047733 119 FQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPN------------- 184 (508)
Q Consensus 119 l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~------------- 184 (508)
+.+|+++.|.++++.. |.++..+++|++|++++|.+..+|..+..++.+..+..++|..+..++..
T Consensus 90 ~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~ 169 (1081)
T KOG0618|consen 90 MRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLG 169 (1081)
T ss_pred hhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcc
Confidence 9999999999998776 89999999999999999999888887777777777777766323332221
Q ss_pred --hhhcCCCCcE-EEeecCCCcc-ccccCcCCCCcccchhhc----cCCCCccEEEEecccCccCCCCCccCCCccEEEE
Q 047733 185 --VISSLSQLEE-LYIGESPIMW-GKVGGVDGEGRNASLDEL----NNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSI 256 (508)
Q Consensus 185 --~l~~l~~L~~-L~l~~~~~~~-~~~~~~~~~~~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i 256 (508)
++.....+++ |++..|.+.- +...+.........-..+ -.-++|+.|..+.|.....-.. ....+|+.+.+
T Consensus 170 ~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~-p~p~nl~~~di 248 (1081)
T KOG0618|consen 170 GSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH-PVPLNLQYLDI 248 (1081)
T ss_pred cchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc-cccccceeeec
Confidence 1111222333 5555554430 000000000000000000 1123455566555553322111 35667888888
Q ss_pred EecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCce
Q 047733 257 LIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLL 336 (508)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 336 (508)
+.........+...+.+|+.+....+.....+.. .....+|+.|.+..+ .++.++.. .+++..|++|++.. +++.
T Consensus 249 s~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~r-i~~~~~L~~l~~~~n-el~yip~~--le~~~sL~tLdL~~-N~L~ 323 (1081)
T KOG0618|consen 249 SHNNLSNLPEWIGACANLEALNANHNRLVALPLR-ISRITSLVSLSAAYN-ELEYIPPF--LEGLKSLRTLDLQS-NNLP 323 (1081)
T ss_pred chhhhhcchHHHHhcccceEecccchhHHhhHHH-HhhhhhHHHHHhhhh-hhhhCCCc--ccccceeeeeeehh-cccc
Confidence 8665544445555555564444433332222222 224567888877654 44444332 35699999999988 4566
Q ss_pred eeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccc
Q 047733 337 CVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTEC 416 (508)
Q Consensus 337 ~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 416 (508)
.+++.. ....-.+|+.|..+. ..+...+ ......++.|+.|++.+- .+++- .+....++++|+.|+++.
T Consensus 324 ~lp~~~-----l~v~~~~l~~ln~s~-n~l~~lp--~~~e~~~~~Lq~LylanN-~Ltd~-c~p~l~~~~hLKVLhLsy- 392 (1081)
T KOG0618|consen 324 SLPDNF-----LAVLNASLNTLNVSS-NKLSTLP--SYEENNHAALQELYLANN-HLTDS-CFPVLVNFKHLKVLHLSY- 392 (1081)
T ss_pred ccchHH-----HhhhhHHHHHHhhhh-ccccccc--cccchhhHHHHHHHHhcC-ccccc-chhhhccccceeeeeecc-
Confidence 554311 011112355555544 2333332 234567899999999983 66653 123457899999999987
Q ss_pred cchhhhhccccCCcCCCCCCceeeccccCeeEcCCCcccccccc
Q 047733 417 QNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCT 460 (508)
Q Consensus 417 ~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 460 (508)
..|.++. ...+..++.|++|+++|. +|+.++.
T Consensus 393 NrL~~fp-----------as~~~kle~LeeL~LSGN-kL~~Lp~ 424 (1081)
T KOG0618|consen 393 NRLNSFP-----------ASKLRKLEELEELNLSGN-KLTTLPD 424 (1081)
T ss_pred cccccCC-----------HHHHhchHHhHHHhcccc-hhhhhhH
Confidence 4455544 234455677777777774 6666664
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.3e-17 Score=136.82 Aligned_cols=150 Identities=27% Similarity=0.443 Sum_probs=76.8
Q ss_pred CCcccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733 38 LKVCTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL 116 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 116 (508)
++.+++|.+++|.+..+|+.+ .+.+|++|++.+ +.+.++|.++ +.+++|++|+++-|.+..+|..|
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n------------nqie~lp~~i-ssl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN------------NQIEELPTSI-SSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhccc------------chhhhcChhh-hhchhhhheecchhhhhcCcccc
Confidence 445555556655555554433 555555555554 2333334343 45555555555555555555555
Q ss_pred ccCccccEEeccCCCCCC---ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCc
Q 047733 117 RLFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLE 193 (508)
Q Consensus 117 ~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 193 (508)
+.++.|+.|++.+|.+.+ |..+..+..|+-|+++.|+++-+|..++++++|+.|.++.|. +-++|.. ++.+..|+
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lr 176 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLR 176 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHH
Confidence 555555555555555443 344444455555555555555555555555555555555544 3344444 45555555
Q ss_pred EEEeecCCC
Q 047733 194 ELYIGESPI 202 (508)
Q Consensus 194 ~L~l~~~~~ 202 (508)
+|.+++|.+
T Consensus 177 elhiqgnrl 185 (264)
T KOG0617|consen 177 ELHIQGNRL 185 (264)
T ss_pred HHhccccee
Confidence 555554443
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.59 E-value=1.2e-16 Score=147.90 Aligned_cols=220 Identities=19% Similarity=0.292 Sum_probs=148.7
Q ss_pred CCcccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCCCcccC-----------CCCCCCCChhhhhCCCCccEEEec
Q 047733 38 LKVCTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIA-----------NDPSRRIPDKFFTGMRELRVLDFA 105 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~L~~L~l~ 105 (508)
|+.+++++...|-++.+|+.. .+..|..|++..|.++.+| .++ .+.+.-+|.....++.++.+||+.
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecc
Confidence 778888888888888887654 8888888888888888877 333 355667888887899999999999
Q ss_pred CCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCC-------------------
Q 047733 106 RMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLT------------------- 165 (508)
Q Consensus 106 ~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~------------------- 165 (508)
+|+++++|..++.+.+|.+||+++|.++. |..+|++ +|+.|.+.||.+..+-+.+-+..
T Consensus 261 dNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~ 339 (565)
T KOG0472|consen 261 DNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ 339 (565)
T ss_pred ccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence 99999999999999999999999999998 8999999 99999999998876655433222
Q ss_pred -----------------------CCceEeccCCCCCCccChhhhhcCC--CCcEEEeecCCCccccccC-----------
Q 047733 166 -----------------------HLRLLDLSNCFNLKVIPPNVISSLS--QLEELYIGESPIMWGKVGG----------- 209 (508)
Q Consensus 166 -----------------------~L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~----------- 209 (508)
+.+.|+++.-+ ++.+|..++..-. -....+++.|.+..-..+.
T Consensus 340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ 418 (565)
T KOG0472|consen 340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLV 418 (565)
T ss_pred CcccccccCCCCCCcccchhhhhhhhhhcccccc-cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHH
Confidence 22222222211 2333322111110 1222333333221111000
Q ss_pred cCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecC
Q 047733 210 VDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGD 260 (508)
Q Consensus 210 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~ 260 (508)
........++..++.+++|..|++++|....+|..++.+..|+.++++...
T Consensus 419 lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 419 LSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR 469 (565)
T ss_pred hhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc
Confidence 011111234456677788888888888888888888788888888887554
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=4.7e-17 Score=133.55 Aligned_cols=170 Identities=22% Similarity=0.411 Sum_probs=150.7
Q ss_pred CCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCC
Q 047733 51 ISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYC 130 (508)
Q Consensus 51 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~ 130 (508)
+.+++.++.+++++.|.++. +....+|..+ ..+++|++|++.+|+++++|.+++.+++|+.|+++.|
T Consensus 23 f~~~~gLf~~s~ITrLtLSH------------NKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn 89 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSH------------NKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN 89 (264)
T ss_pred Hhhcccccchhhhhhhhccc------------CceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchh
Confidence 46677778999999999998 4555666666 7899999999999999999999999999999999999
Q ss_pred CCCC-ccccCCCCCCcEEEccCCCch--hhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccc
Q 047733 131 ELGD-IAIVGDLKTLVILTLRGSDME--KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKV 207 (508)
Q Consensus 131 ~l~~-~~~i~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 207 (508)
++.. |.++|.++-|+.||+.+|.+. .+|..+..++.|+.|++++|. ...+|++ ++++++|+.|.+..|.+.
T Consensus 90 rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll---- 163 (264)
T KOG0617|consen 90 RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL---- 163 (264)
T ss_pred hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh----
Confidence 9776 999999999999999999776 788888999999999999977 8889998 799999999999988765
Q ss_pred cCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccC
Q 047733 208 GGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFF 248 (508)
Q Consensus 208 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~ 248 (508)
+.+.+++.+..|++|.+.++....+|+.++.+
T Consensus 164 ---------~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 164 ---------SLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred ---------hCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 57788999999999999999988888876444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=8.1e-12 Score=130.91 Aligned_cols=132 Identities=22% Similarity=0.260 Sum_probs=68.7
Q ss_pred ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCc
Q 047733 41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQ 120 (508)
Q Consensus 41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 120 (508)
-..|+++.+.+..+|... .++|+.|++.+|.+. .+|. .+++|++|++++|+++.+|.. .+
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt------------~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~ 262 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLT------------SLPA----LPPELRTLEVSGNQLTSLPVL---PP 262 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCC------------CCCC----CCCCCcEEEecCCccCcccCc---cc
Confidence 345666666666665532 235666666653332 2221 235566666666666655532 23
Q ss_pred cccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeec
Q 047733 121 NLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGE 199 (508)
Q Consensus 121 ~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 199 (508)
+|+.|++.+|.++. |.. ..+|+.|++++|.++.+|. ..++|+.|++++|. +..+|.. ..+|+.|++.+
T Consensus 263 sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~ 331 (788)
T PRK15387 263 GLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQ-LASLPAL----PSELCKLWAYN 331 (788)
T ss_pred ccceeeccCCchhhhhhc---hhhcCEEECcCCccccccc---cccccceeECCCCc-cccCCCC----ccccccccccc
Confidence 56666666665554 221 2445566666666665553 23456666666654 4444431 12355555555
Q ss_pred CCCc
Q 047733 200 SPIM 203 (508)
Q Consensus 200 ~~~~ 203 (508)
|.++
T Consensus 332 N~L~ 335 (788)
T PRK15387 332 NQLT 335 (788)
T ss_pred Cccc
Confidence 5443
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.32 E-value=1.2e-11 Score=129.75 Aligned_cols=171 Identities=20% Similarity=0.164 Sum_probs=117.8
Q ss_pred cCCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh
Q 047733 36 DALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS 115 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~ 115 (508)
.+.++++.|++..|.+..+|.. .++|++|++.+|.+..+ |. ..++|+.|++++|.++.+|..
T Consensus 219 ~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsL------------P~----lp~sL~~L~Ls~N~L~~Lp~l 280 (788)
T PRK15387 219 CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSL------------PV----LPPGLLELSIFSNPLTHLPAL 280 (788)
T ss_pred chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcc------------cC----cccccceeeccCCchhhhhhc
Confidence 3556899999999999988864 68999999999544433 32 235788899999988877753
Q ss_pred hccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcE
Q 047733 116 LRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEE 194 (508)
Q Consensus 116 ~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 194 (508)
. ..|+.|++++|+++. |.. .++|++|++++|.++.+|.. ..+|+.|++++|. +..+|. + ..+|+.
T Consensus 281 p---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~--l--p~~Lq~ 346 (788)
T PRK15387 281 P---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLPT--L--PSGLQE 346 (788)
T ss_pred h---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccCc-cccccc--c--ccccce
Confidence 3 467888888888777 432 46789999999888877642 2357778888876 666664 1 147888
Q ss_pred EEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEE
Q 047733 195 LYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSIL 257 (508)
Q Consensus 195 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~ 257 (508)
|++++|.++.. +. + ..+|+.|++++|....+|.. ..+|+.|.+.
T Consensus 347 LdLS~N~Ls~L-------------P~-l--p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs 390 (788)
T PRK15387 347 LSVSDNQLASL-------------PT-L--PSELYKLWAYNNRLTSLPAL---PSGLKELIVS 390 (788)
T ss_pred EecCCCccCCC-------------CC-C--CcccceehhhccccccCccc---ccccceEEec
Confidence 88888877521 11 1 13566677777665555543 2345555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=1.1e-11 Score=130.72 Aligned_cols=177 Identities=19% Similarity=0.273 Sum_probs=103.6
Q ss_pred CcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhcc
Q 047733 39 KVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRL 118 (508)
Q Consensus 39 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~ 118 (508)
.+...|.+.++.+..+|... .+.|+.|++.+| .+..+|..++ .+|+.|++++|.++.+|..+.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N------------~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~- 240 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNN------------ELKSLPENLQ---GNIKTLYANSNQLTSIPATLP- 240 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCC------------CCCcCChhhc---cCCCEEECCCCccccCChhhh-
Confidence 44567777777776666532 346777777763 3333444332 467777777777776665443
Q ss_pred CccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733 119 FQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197 (508)
Q Consensus 119 l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 197 (508)
.+|+.|++++|.+.. |..+. .+|++|++++|.++.+|..+. .+|+.|++++|. +..+|.. +. ++|+.|++
T Consensus 241 -~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~L 311 (754)
T PRK15370 241 -DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNV 311 (754)
T ss_pred -ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHh
Confidence 357777777777666 44442 467777777777766665432 467777777765 5556543 22 35666777
Q ss_pred ecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEe
Q 047733 198 GESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILI 258 (508)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~ 258 (508)
++|.++.. +..+ .++|+.|++++|....+|..+ +++|+.|.+..
T Consensus 312 s~N~Lt~L-------------P~~l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~ 355 (754)
T PRK15370 312 QSNSLTAL-------------PETL--PPGLKTLEAGENALTSLPASL--PPELQVLDVSK 355 (754)
T ss_pred cCCccccC-------------Cccc--cccceeccccCCccccCChhh--cCcccEEECCC
Confidence 66665411 1111 146667777766655555543 24566665553
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.31 E-value=1.7e-12 Score=138.84 Aligned_cols=258 Identities=21% Similarity=0.238 Sum_probs=134.0
Q ss_pred CCCCccEEEecCCcCCCCchhhccCccccEEeccCCC--CCC-c-cccCCCCCCcEEEccCC-CchhhHHHhccCCCCce
Q 047733 95 GMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCE--LGD-I-AIVGDLKTLVILTLRGS-DMEKLVEEIGQLTHLRL 169 (508)
Q Consensus 95 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~--l~~-~-~~i~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~ 169 (508)
.....|...+.++.+..++... .+++|++|-+.++. +.. + ..|..++.|+.||+++| .+.++|+.++.+.+||.
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 3455666666666665555432 33467777776664 333 2 33666777777777766 55677777777777777
Q ss_pred EeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc---CccCCCCCc
Q 047733 170 LDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED---EKTLPRDLS 246 (508)
Q Consensus 170 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~~l~ 246 (508)
|+++++. +..+|.. +.+++.|.+|++..+..... .+.....+++||.|.+.... .......+.
T Consensus 600 L~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~------------~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~ 665 (889)
T KOG4658|consen 600 LDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRLES------------IPGILLELQSLRVLRLPRSALSNDKLLLKELE 665 (889)
T ss_pred ccccCCC-ccccchH-HHHHHhhheecccccccccc------------ccchhhhcccccEEEeeccccccchhhHHhhh
Confidence 7777765 6677776 67777777777765543211 11233346667777665443 111112223
Q ss_pred cCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcE
Q 047733 247 FFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKH 326 (508)
Q Consensus 247 ~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 326 (508)
.+++|+.+.+..... ..... ...+.........+.+.++...+.. .....+.+|+.
T Consensus 666 ~Le~L~~ls~~~~s~-~~~e~--------------------l~~~~~L~~~~~~l~~~~~~~~~~~---~~~~~l~~L~~ 721 (889)
T KOG4658|consen 666 NLEHLENLSITISSV-LLLED--------------------LLGMTRLRSLLQSLSIEGCSKRTLI---SSLGSLGNLEE 721 (889)
T ss_pred cccchhhheeecchh-HhHhh--------------------hhhhHHHHHHhHhhhhcccccceee---cccccccCcce
Confidence 333333333321110 00000 0011111122223333222222222 22356788888
Q ss_pred EEEecCCCceeeeecccCCCCCCC-cCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceec
Q 047733 327 LEVVENSNLLCVVDTVDRATAPTT-AFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVF 397 (508)
Q Consensus 327 L~l~~~~~l~~i~~~~~~~~~~~~-~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 397 (508)
|.+.+|...+......... ... .|+++.++.+.+|+.++...+. .-.|+|+.|++.+|+.+.++.
T Consensus 722 L~i~~~~~~e~~~~~~~~~--~~~~~f~~l~~~~~~~~~~~r~l~~~----~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 722 LSILDCGISEIVIEWEESL--IVLLCFPNLSKVSILNCHMLRDLTWL----LFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred EEEEcCCCchhhccccccc--chhhhHHHHHHHHhhccccccccchh----hccCcccEEEEecccccccCC
Confidence 8888876543322111111 111 2667777777777766654321 234777777777777776654
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.26 E-value=1.9e-11 Score=128.92 Aligned_cols=182 Identities=17% Similarity=0.245 Sum_probs=134.1
Q ss_pred cCCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh
Q 047733 36 DALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS 115 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~ 115 (508)
.+++.++.|++++|.+..+|... .++|++|++.+|.. ..+|..+ ..+|+.|++++|.+..+|..
T Consensus 196 ~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~L------------tsLP~~l---~~~L~~L~Ls~N~L~~LP~~ 259 (754)
T PRK15370 196 CIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQL------------TSIPATL---PDTIQEMELSINRITELPER 259 (754)
T ss_pred ccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcc------------ccCChhh---hccccEEECcCCccCcCChh
Confidence 35678999999999999888643 46999999999443 3445433 24689999999999888876
Q ss_pred hccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcE
Q 047733 116 LRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEE 194 (508)
Q Consensus 116 ~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 194 (508)
+. .+|++|++++|+++. |..+. .+|++|++++|.++.+|..+. .+|+.|++++|. +..+|.. + .++|+.
T Consensus 260 l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~ 329 (754)
T PRK15370 260 LP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKT 329 (754)
T ss_pred Hh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--ccccee
Confidence 64 479999999988887 55553 589999999998888775443 478889998877 6667653 2 368889
Q ss_pred EEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecC
Q 047733 195 LYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGD 260 (508)
Q Consensus 195 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~ 260 (508)
|.+.+|.++. ++..+. ++|+.|++++|....+|..+ .++|+.|.+..+.
T Consensus 330 L~Ls~N~Lt~-------------LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 330 LEAGENALTS-------------LPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNA 378 (754)
T ss_pred ccccCCcccc-------------CChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCc
Confidence 9988887652 222232 58899999988877677654 3577777776443
No 21
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.26 E-value=9.7e-14 Score=129.73 Aligned_cols=81 Identities=23% Similarity=0.373 Sum_probs=41.7
Q ss_pred cccEEeccCCC-CCC-c--cccCCCCCCcEEEccCC-Cch--hhHHHhccCCCCceEeccCCCCCCccChh-hhhcCCCC
Q 047733 121 NLQTLSLDYCE-LGD-I--AIVGDLKTLVILTLRGS-DME--KLVEEIGQLTHLRLLDLSNCFNLKVIPPN-VISSLSQL 192 (508)
Q Consensus 121 ~L~~L~l~~~~-l~~-~--~~i~~l~~L~~L~l~~~-~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~-~l~~l~~L 192 (508)
.|+.|.+++|. ..+ + .....+++++.|++.++ +++ .+-..-.+|++|++|++..|..+++..-. +...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 35666666665 333 1 23345566666666665 333 22222345666666666665545443321 23456666
Q ss_pred cEEEeecCC
Q 047733 193 EELYIGESP 201 (508)
Q Consensus 193 ~~L~l~~~~ 201 (508)
++++++||.
T Consensus 219 ~~lNlSwc~ 227 (483)
T KOG4341|consen 219 KYLNLSWCP 227 (483)
T ss_pred HHhhhccCc
Confidence 666666654
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.21 E-value=2.1e-13 Score=127.55 Aligned_cols=295 Identities=16% Similarity=0.120 Sum_probs=167.9
Q ss_pred CCCcEEEccCC-Cc--hhhHHHhccCCCCceEeccCCCCCCccCh-hhhhcCCCCcEEEeecCCCccccccCcCCCCccc
Q 047733 142 KTLVILTLRGS-DM--EKLVEEIGQLTHLRLLDLSNCFNLKVIPP-NVISSLSQLEELYIGESPIMWGKVGGVDGEGRNA 217 (508)
Q Consensus 142 ~~L~~L~l~~~-~i--~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 217 (508)
..|+.|.++|+ .+ ..+-....+++++++|.+.+|..+++..- ..-..+++|+++++..|....+.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~----------- 206 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV----------- 206 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH-----------
Confidence 47889999987 22 24444556899999999999987766543 33457899999999886543111
Q ss_pred chh-hccCCCCccEEEEeccc---CccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhh
Q 047733 218 SLD-ELNNLSKLTSLEILIED---EKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIM 293 (508)
Q Consensus 218 ~~~-~l~~l~~L~~L~l~~~~---~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~ 293 (508)
.+. --..+++|..++++|++ ...+......+.+++.+...+|...... ....+.+
T Consensus 207 ~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le---------------------~l~~~~~ 265 (483)
T KOG4341|consen 207 SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE---------------------ALLKAAA 265 (483)
T ss_pred HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH---------------------HHHHHhc
Confidence 122 23457788999999887 2222222344555555544333321110 0111122
Q ss_pred cccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCc
Q 047733 294 QLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGP 373 (508)
Q Consensus 294 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~ 373 (508)
..+-+..+++..|..+++........++..|+++..++|..++..+ .|. -....++|+.|.+..|.++++.....
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~---l~a--Lg~~~~~L~~l~l~~c~~fsd~~ft~ 340 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV---LWA--LGQHCHNLQVLELSGCQQFSDRGFTM 340 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH---HHH--HhcCCCceEEEeccccchhhhhhhhh
Confidence 3344555555566666655433333456667777777666544211 111 22345677777777777666654333
Q ss_pred ccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCc
Q 047733 374 LAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLP 453 (508)
Q Consensus 374 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 453 (508)
+. ...+.|+.+++.+|....+-.......++|.|+++.++.|..+.+--.... .........|+.+++.+||
T Consensus 341 l~-rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l-------~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 341 LG-RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL-------SSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred hh-cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh-------hhccccccccceeeecCCC
Confidence 22 456777777777776555432223446677777777776665554411110 1223345667777777777
Q ss_pred cccccccCccccccCCccEEEEeeCCCcc
Q 047733 454 QLTSFCTGDLHFEFPSLEKLRILECPQVK 482 (508)
Q Consensus 454 ~L~~~~~~~~~~~~p~L~~L~i~~C~~l~ 482 (508)
.+++---..+. .++.|+++++.+|.+.+
T Consensus 413 ~i~d~~Le~l~-~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 413 LITDATLEHLS-ICRNLERIELIDCQDVT 440 (483)
T ss_pred CchHHHHHHHh-hCcccceeeeechhhhh
Confidence 77665433333 45677777777777643
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=1.7e-10 Score=99.33 Aligned_cols=119 Identities=22% Similarity=0.369 Sum_probs=43.1
Q ss_pred cccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh-c
Q 047733 40 VCTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL-R 117 (508)
Q Consensus 40 ~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~-~ 117 (508)
++|.|++.+|.+..+..+. .+.+|+.|++++|.+..+ +. +..+++|+.|++++|.++.+...+ .
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l------------~~--l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL------------EG--LPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--------------TT------TT--EEE--SS---S-CHHHHH
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccc------------cC--ccChhhhhhcccCCCCCCccccchHH
Confidence 4688888888887777665 577888888888544433 22 366788888888888888776544 3
Q ss_pred cCccccEEeccCCCCCC---ccccCCCCCCcEEEccCCCchhhH----HHhccCCCCceEec
Q 047733 118 LFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSDMEKLV----EEIGQLTHLRLLDL 172 (508)
Q Consensus 118 ~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~~lp----~~~~~l~~L~~L~l 172 (508)
.+++|+.|++++|++.+ ...+..+++|++|++.+|.+...+ ..+..+++|+.||-
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 57888888888887765 456667778888888777665222 12445566666553
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=4.7e-11 Score=116.01 Aligned_cols=184 Identities=23% Similarity=0.249 Sum_probs=99.9
Q ss_pred CCcccEEEeecCCCCC-----CCCC-CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCC-
Q 047733 38 LKVCTAISLKNSNISE-----LPQV-FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLL- 110 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~- 110 (508)
...++.+++.++.+.+ ++.. ...++++.|.+.++..+..+. ....++ ..+..+++|+.|++++|.+.
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~-----~~~~~~-~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPR-----GLQSLL-QGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcch-----HHHHHH-HHHHhcCceeEEEccCCCCCh
Confidence 3447777777777622 2221 255667777777633321100 001111 22356777777777777765
Q ss_pred CCchhhccCcc---ccEEeccCCCCCC------ccccCCC-CCCcEEEccCCCch-----hhHHHhccCCCCceEeccCC
Q 047733 111 PLPSSLRLFQN---LQTLSLDYCELGD------IAIVGDL-KTLVILTLRGSDME-----KLVEEIGQLTHLRLLDLSNC 175 (508)
Q Consensus 111 ~l~~~~~~l~~---L~~L~l~~~~l~~------~~~i~~l-~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~ 175 (508)
..+..+..+.. |++|++++|.+++ ...+..+ ++|+.|++++|.++ .++..+..+++|++|++++|
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 23344444444 7777777777653 1234455 67777777777655 34445556667777777776
Q ss_pred CCCCc-----cChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733 176 FNLKV-----IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED 237 (508)
Q Consensus 176 ~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 237 (508)
. +.. ++.. +..+++|++|++++|.+... ....+...+..+++|+.|+++++.
T Consensus 176 ~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~--------~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 176 G-IGDAGIRALAEG-LKANCNLEVLDLNNNGLTDE--------GASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred C-CchHHHHHHHHH-HHhCCCCCEEeccCCccChH--------HHHHHHHHhcccCCCCEEecCCCc
Confidence 5 331 1111 33445777777776655411 111233344555666666666554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=1.1e-11 Score=120.52 Aligned_cols=192 Identities=22% Similarity=0.296 Sum_probs=152.9
Q ss_pred CCcccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733 38 LKVCTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL 116 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 116 (508)
.+.....+++.|.+.++|.-. .+.-|+.+.++. +.+..+|..+ .++..|.++||+.|+++.+|..+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~------------n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~l 140 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYH------------NCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGL 140 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHh------------ccceecchhh-hhhhHHHHhhhccchhhcCChhh
Confidence 445566677777777776543 566666677766 4444555555 78899999999999999999888
Q ss_pred ccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEE
Q 047733 117 RLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL 195 (508)
Q Consensus 117 ~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 195 (508)
+.|+ |+.|.+++|+++. |..++.+.+|..||.+.|.+..+|..++++.+|+.|.++.|. +..+|.. +..+ .|..|
T Consensus 141 C~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~l 216 (722)
T KOG0532|consen 141 CDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRL 216 (722)
T ss_pred hcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeee
Confidence 8777 8999999999888 899998999999999999999999999999999999999987 7788887 5655 49999
Q ss_pred EeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCC---ccCCCccEEEEEec
Q 047733 196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDL---SFFKMLQRYSILIG 259 (508)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l---~~~~~L~~L~i~~~ 259 (508)
+++.|++. .++..+.+++.|+.|-+.+|...+-|+.+ +...=.+.|.+..|
T Consensus 217 DfScNkis-------------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 217 DFSCNKIS-------------YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecccCcee-------------ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 99999886 56788999999999999999988888766 22222345555544
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.04 E-value=6.4e-11 Score=115.07 Aligned_cols=162 Identities=18% Similarity=0.159 Sum_probs=89.0
Q ss_pred CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCC-------CchhhccCccccEEeccCCC
Q 047733 59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP-------LPSSLRLFQNLQTLSLDYCE 131 (508)
Q Consensus 59 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------l~~~~~~l~~L~~L~l~~~~ 131 (508)
.+++|+.|.+.++.+..- ....++.. +...+.++.++++++.+.. ++..+..+++|+.|++++|.
T Consensus 21 ~l~~L~~l~l~~~~l~~~-------~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEE-------AAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHhhccEEeecCCCCcHH-------HHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 556677777777221100 00112222 2456667777777776542 23445566777777777777
Q ss_pred CCC--ccccCCCC---CCcEEEccCCCch-----hhHHHhccC-CCCceEeccCCCCCC----ccChhhhhcCCCCcEEE
Q 047733 132 LGD--IAIVGDLK---TLVILTLRGSDME-----KLVEEIGQL-THLRLLDLSNCFNLK----VIPPNVISSLSQLEELY 196 (508)
Q Consensus 132 l~~--~~~i~~l~---~L~~L~l~~~~i~-----~lp~~~~~l-~~L~~L~l~~~~~~~----~~~~~~l~~l~~L~~L~ 196 (508)
+.. +..+..+. +|++|++++|.+. .+...+..+ ++|++|++++|.... .++.. +..+++|++|+
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~ 171 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELN 171 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEE
Confidence 653 33333333 3777777777554 233345555 677777777776221 12222 44556777777
Q ss_pred eecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733 197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED 237 (508)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 237 (508)
+.+|.+.+. ....+...+...++|+.|+++++.
T Consensus 172 l~~n~l~~~--------~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 172 LANNGIGDA--------GIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred CcCCCCchH--------HHHHHHHHHHhCCCCCEEeccCCc
Confidence 777665421 111233344555677777776665
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=2.3e-10 Score=98.55 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=32.6
Q ss_pred hCCCCccEEEecCCcCCCCchhhc-cCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHh-ccCCCCceEe
Q 047733 94 TGMRELRVLDFARMHLLPLPSSLR-LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEI-GQLTHLRLLD 171 (508)
Q Consensus 94 ~~l~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~ 171 (508)
.+..+++.|++.++.|+.+.. ++ .+.+|+.|++++|.++...++..+++|++|++++|.++.+...+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccccc-hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 355566777777777665542 33 46677777777777766666667777777777777777664444 3567777777
Q ss_pred ccCCCCCCccCh-hhhhcCCCCcEEEeecCCCc
Q 047733 172 LSNCFNLKVIPP-NVISSLSQLEELYIGESPIM 203 (508)
Q Consensus 172 l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 203 (508)
+++|. +.++.. ..+..+++|+.|++.+|.+.
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCccc
Confidence 77665 433322 12566677777777666554
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.96 E-value=1.1e-10 Score=108.66 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=51.2
Q ss_pred hhccCCCCccEEEEecccCccCC-CCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccce
Q 047733 220 DELNNLSKLTSLEILIEDEKTLP-RDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGI 298 (508)
Q Consensus 220 ~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L 298 (508)
..++.+++|+.|++++|..+.+. .++.....+++|.+.... .-....++...+..|
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-----------------------l~~v~~~~f~~ls~L 324 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-----------------------LEFVSSGMFQGLSGL 324 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-----------------------HHHHHHHhhhccccc
Confidence 45789999999999999866554 345666666766654322 112233344456667
Q ss_pred eEEEecCCCCccccccCCcCCCCCCCcEEEEec
Q 047733 299 KELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVE 331 (508)
Q Consensus 299 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 331 (508)
++|++.+. .++.+.+.. ......|.+|.+-.
T Consensus 325 ~tL~L~~N-~it~~~~~a-F~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 325 KTLSLYDN-QITTVAPGA-FQTLFSLSTLNLLS 355 (498)
T ss_pred eeeeecCC-eeEEEeccc-ccccceeeeeehcc
Confidence 77777654 444444332 23445556665544
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.91 E-value=2.2e-10 Score=106.78 Aligned_cols=249 Identities=19% Similarity=0.241 Sum_probs=151.9
Q ss_pred CCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhccCccccEEeccC-CCCCC-c-cccCCCCCCcEEEccCCCchhhH
Q 047733 83 DPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLFQNLQTLSLDY-CELGD-I-AIVGDLKTLVILTLRGSDMEKLV 158 (508)
Q Consensus 83 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~-~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp 158 (508)
+.+..+|..+|+.+++||+|||+.|.|+.+ |..|..++.|-.|-+.+ |+|++ + ..|+++..|+.|.+..+.+.-++
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir 156 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIR 156 (498)
T ss_pred CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchh
Confidence 667777888889999999999999999864 67888888877777766 66988 5 77888999999998888888554
Q ss_pred -HHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCC------CccccccC---cCCCCc--ccchhhcc---
Q 047733 159 -EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESP------IMWGKVGG---VDGEGR--NASLDELN--- 223 (508)
Q Consensus 159 -~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~------~~~~~~~~---~~~~~~--~~~~~~l~--- 223 (508)
..+..+++|..|.+.+|. +..++...+..+.+++.+.+..+. +.|..... +...+. ...+..+.
T Consensus 157 ~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R 235 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR 235 (498)
T ss_pred HHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH
Confidence 557888999999888876 777777556777778877665543 32222110 000000 00000000
Q ss_pred --C------CCCccEE----EEecccCccCC-CCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccch
Q 047733 224 --N------LSKLTSL----EILIEDEKTLP-RDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGG 290 (508)
Q Consensus 224 --~------l~~L~~L----~l~~~~~~~~~-~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~ 290 (508)
+ .-.++.+ .-.+......| ..++.+++|+.+++++.. ......+
T Consensus 236 i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~-----------------------i~~i~~~ 292 (498)
T KOG4237|consen 236 INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK-----------------------ITRIEDG 292 (498)
T ss_pred hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc-----------------------cchhhhh
Confidence 0 0001111 00011111111 124667777777776433 1122233
Q ss_pred hhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcc
Q 047733 291 HIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLR 364 (508)
Q Consensus 291 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~ 364 (508)
.......+++|++... .+..+.. ....++..|+.|.+.+ ++|+.+. ++ .-....+|.+|.+...|
T Consensus 293 aFe~~a~l~eL~L~~N-~l~~v~~-~~f~~ls~L~tL~L~~-N~it~~~----~~--aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRN-KLEFVSS-GMFQGLSGLKTLSLYD-NQITTVA----PG--AFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhcchhhhhhhhcCcc-hHHHHHH-HhhhccccceeeeecC-CeeEEEe----cc--cccccceeeeeehccCc
Confidence 3345677888888654 4444322 2346789999999999 5777652 22 22344677888876543
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=4.5e-10 Score=101.02 Aligned_cols=193 Identities=18% Similarity=0.228 Sum_probs=142.9
Q ss_pred cCCCcccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCC----CcccCCCCCC--------CCChhhhhCCCCccEE
Q 047733 36 DALKVCTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRI----PVHIANDPSR--------RIPDKFFTGMRELRVL 102 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~----~~~~~~~~~~--------~~~~~~~~~l~~L~~L 102 (508)
.+++++..+-++.+....+..+. .-|.|+++.+..--+... |...-.+... .....+ ...+.|..+
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~-dTWq~Ltel 289 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSA-DTWQELTEL 289 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEec-chHhhhhhc
Confidence 45788889999988876665544 567888887765322111 2111011111 111111 345789999
Q ss_pred EecCCcCCCCchhhccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccC
Q 047733 103 DFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIP 182 (508)
Q Consensus 103 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~ 182 (508)
|+++|.|+.+-++..-.+.++.|++++|.+..+..+..+++|+.||+++|.+.++..+=.++-+.++|.+++|. +.++.
T Consensus 290 DLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LS 368 (490)
T KOG1259|consen 290 DLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLS 368 (490)
T ss_pred cccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhh
Confidence 99999999988888889999999999999888777899999999999999998887666688899999999976 77776
Q ss_pred hhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCC
Q 047733 183 PNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPR 243 (508)
Q Consensus 183 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 243 (508)
. +.++-+|..|++.+|++... .-..++++++.|+.+.+.+|....++.
T Consensus 369 G--L~KLYSLvnLDl~~N~Ie~l-----------deV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 369 G--LRKLYSLVNLDLSSNQIEEL-----------DEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred h--hHhhhhheeccccccchhhH-----------HHhcccccccHHHHHhhcCCCccccch
Confidence 5 78899999999999887522 134678899999999998887555443
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=5.7e-10 Score=100.38 Aligned_cols=125 Identities=22% Similarity=0.319 Sum_probs=84.0
Q ss_pred CCcccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733 38 LKVCTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL 116 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 116 (508)
|+.++.+++++|.+..+.... -.|.+|.|++++|.+..+ .. ...+.+|..||+++|.++++...-
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v------------~n--La~L~~L~~LDLS~N~Ls~~~Gwh 348 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV------------QN--LAELPQLQLLDLSGNLLAECVGWH 348 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee------------hh--hhhcccceEeecccchhHhhhhhH
Confidence 566777777777776665443 567777777777433322 21 256777777777777776665555
Q ss_pred ccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhH--HHhccCCCCceEeccCCC
Q 047733 117 RLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLV--EEIGQLTHLRLLDLSNCF 176 (508)
Q Consensus 117 ~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~ 176 (508)
.++-+.++|.++.|.+.+.++++++++|.+||+++|.|+.+. .++++++.|+++.+.+|+
T Consensus 349 ~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 566677777777777666777777777777777777777553 456777777777777766
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.75 E-value=8.4e-09 Score=103.29 Aligned_cols=145 Identities=28% Similarity=0.413 Sum_probs=83.6
Q ss_pred CccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCC
Q 047733 98 ELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCF 176 (508)
Q Consensus 98 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 176 (508)
+|+.|++++|++..+|..++.+++|+.|++++|++++ +...+.+..|+.|+++++.+..+|..+.....|+++.++.|.
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 6666666666666665556666666666666666665 444446666666666666666666555555556666666654
Q ss_pred CCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEE
Q 047733 177 NLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSI 256 (508)
Q Consensus 177 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i 256 (508)
.+. .+.. +..+.++..+.+..+... ..+..++.+++++.|+++.+....++. +....+++.+.+
T Consensus 221 ~~~-~~~~-~~~~~~l~~l~l~~n~~~-------------~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~ 284 (394)
T COG4886 221 IIE-LLSS-LSNLKNLSGLELSNNKLE-------------DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDL 284 (394)
T ss_pred cee-cchh-hhhcccccccccCCceee-------------eccchhccccccceecccccccccccc-ccccCccCEEec
Confidence 222 2222 455555555555544433 113445566667777766666555555 555666666655
Q ss_pred Ee
Q 047733 257 LI 258 (508)
Q Consensus 257 ~~ 258 (508)
.+
T Consensus 285 s~ 286 (394)
T COG4886 285 SG 286 (394)
T ss_pred cC
Confidence 43
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.73 E-value=9.7e-09 Score=102.83 Aligned_cols=175 Identities=26% Similarity=0.390 Sum_probs=139.7
Q ss_pred CcccEEEeecCCCCCCCCCCCCC--CCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733 39 KVCTAISLKNSNISELPQVFECP--QLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL 116 (508)
Q Consensus 39 ~~lr~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 116 (508)
+.++.+++.++.+.+++...... +|+.|++.+|.++.+ |..+ ..++.|+.|++++|++..+|...
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l------------~~~~-~~l~~L~~L~l~~N~l~~l~~~~ 182 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL------------PSPL-RNLPNLKNLDLSFNDLSDLPKLL 182 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhh------------hhhh-hccccccccccCCchhhhhhhhh
Confidence 46888888888888888766443 899998888544444 3333 78999999999999999999877
Q ss_pred ccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEE
Q 047733 117 RLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL 195 (508)
Q Consensus 117 ~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 195 (508)
+..+.|+.|+++++++++ |..++....|+++.+++|.+...+..+.++.++..+.+.++. +...+.. ++.+++++.|
T Consensus 183 ~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L 260 (394)
T COG4886 183 SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETL 260 (394)
T ss_pred hhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hcccccccee
Confidence 799999999999999998 666677888999999999766677778889999999887766 5554443 6889999999
Q ss_pred EeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC
Q 047733 196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP 242 (508)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 242 (508)
++..+.++ .+..++.+.+++.|+++++.....+
T Consensus 261 ~~s~n~i~--------------~i~~~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 261 DLSNNQIS--------------SISSLGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred cccccccc--------------ccccccccCccCEEeccCccccccc
Confidence 99998876 2233788899999999987744433
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=6.7e-09 Score=98.34 Aligned_cols=131 Identities=20% Similarity=0.185 Sum_probs=77.3
Q ss_pred hccCccccEEeccCCCCCC-c--cccCCCCCCcEEEccCCCch---hhHHHhccCCCCceEeccCCCCCCccChhhhhcC
Q 047733 116 LRLFQNLQTLSLDYCELGD-I--AIVGDLKTLVILTLRGSDME---KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSL 189 (508)
Q Consensus 116 ~~~l~~L~~L~l~~~~l~~-~--~~i~~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 189 (508)
-.++.+|+.+.++++.+.. + .....+++++.||++.|-+. .+-..+.++++|+.|+++.|....-.....-..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 4466777777777777665 2 35566778888888877555 3334456778888888877652222222112356
Q ss_pred CCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc-CccCCCCCccCCCccEEEEE
Q 047733 190 SQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED-EKTLPRDLSFFKMLQRYSIL 257 (508)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~i~ 257 (508)
+.|+.|.+..|.++|.. +..-+..+|+|+.|.+.+|. .......-..++.|+.|+++
T Consensus 197 ~~lK~L~l~~CGls~k~-----------V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKD-----------VQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred hhhheEEeccCCCCHHH-----------HHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence 67777778777777553 33445566777777777663 11111111234455555554
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.69 E-value=8.9e-10 Score=107.39 Aligned_cols=160 Identities=23% Similarity=0.314 Sum_probs=134.7
Q ss_pred CCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHh
Q 047733 83 DPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEI 161 (508)
Q Consensus 83 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~ 161 (508)
+....+|..+ ..+..|..+.++.|.+..+|..++++..|.+++++.|+++. |..++.++ |+.|-+++|+++.+|..+
T Consensus 85 NR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~i 162 (722)
T KOG0532|consen 85 NRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEI 162 (722)
T ss_pred cccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCccc
Confidence 4555666665 66788999999999999999999999999999999999887 77777665 788888999999999999
Q ss_pred ccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC
Q 047733 162 GQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL 241 (508)
Q Consensus 162 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 241 (508)
+.+..|.+|+.+.|. +..+|.. ++.+.+|+.|.+..|++. .++.++..+ .|..|++++|....+
T Consensus 163 g~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~-------------~lp~El~~L-pLi~lDfScNkis~i 226 (722)
T KOG0532|consen 163 GLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE-------------DLPEELCSL-PLIRLDFSCNKISYL 226 (722)
T ss_pred ccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh-------------hCCHHHhCC-ceeeeecccCceeec
Confidence 988999999999988 7788887 789999999998888775 455677755 588999999999999
Q ss_pred CCCCccCCCccEEEEEecC
Q 047733 242 PRDLSFFKMLQRYSILIGD 260 (508)
Q Consensus 242 ~~~l~~~~~L~~L~i~~~~ 260 (508)
|..+..+..|+.|.+....
T Consensus 227 Pv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred chhhhhhhhheeeeeccCC
Confidence 9999899999988876443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=5.7e-09 Score=98.79 Aligned_cols=203 Identities=22% Similarity=0.211 Sum_probs=100.0
Q ss_pred CCcccEEEeecCCCCCCCC--CC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch
Q 047733 38 LKVCTAISLKNSNISELPQ--VF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS 114 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 114 (508)
.+++|.+++.++.+...+. .. .|++++.|+++.|..-.+ .....+...+++|+.|+++.|.+.....
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw----------~~v~~i~eqLp~Le~LNls~Nrl~~~~~ 189 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW----------FPVLKIAEQLPSLENLNLSSNRLSNFIS 189 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH----------HHHHHHHHhcccchhcccccccccCCcc
Confidence 4566777777666655442 22 667777777766322111 0112334566677777777666542211
Q ss_pred h--hccCccccEEeccCCCCCC--c-cccCCCCCCcEEEccCC-CchhhHHHhccCCCCceEeccCCCCCCccCh-hhhh
Q 047733 115 S--LRLFQNLQTLSLDYCELGD--I-AIVGDLKTLVILTLRGS-DMEKLVEEIGQLTHLRLLDLSNCFNLKVIPP-NVIS 187 (508)
Q Consensus 115 ~--~~~l~~L~~L~l~~~~l~~--~-~~i~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~ 187 (508)
+ -..+.+|+.|.++.|.++. + .....+++|+.|++.+| .+........-+..|++|+|++|+.+ +.+. ...+
T Consensus 190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~ 268 (505)
T KOG3207|consen 190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVG 268 (505)
T ss_pred ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccc
Confidence 1 1145566666666666553 2 34445666666666666 22211111223345666666666532 2221 1245
Q ss_pred cCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC--CCCccCCCccEEEEE
Q 047733 188 SLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP--RDLSFFKMLQRYSIL 257 (508)
Q Consensus 188 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~i~ 257 (508)
.++.|+.|+++.|.+..-. .............++|+.|++..|....++ ..+..+++|+.|.+.
T Consensus 269 ~l~~L~~Lnls~tgi~si~------~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIA------EPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred cccchhhhhccccCcchhc------CCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 6666666666665543111 011122223345556666666666542222 233445555555443
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.1e-09 Score=96.73 Aligned_cols=84 Identities=24% Similarity=0.123 Sum_probs=52.6
Q ss_pred CCcEEEccCCCch--hhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchh
Q 047733 143 TLVILTLRGSDME--KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLD 220 (508)
Q Consensus 143 ~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 220 (508)
.||+||+++..++ .+...+.+|.+|+.|.+.++..-+.+... +.+-.+|+.|+++.|.-. +..+...
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~----------t~n~~~l 254 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGF----------TENALQL 254 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeecccccccc----------chhHHHH
Confidence 4778888877666 44445667777777777776633334443 566677777777765421 1112333
Q ss_pred hccCCCCccEEEEeccc
Q 047733 221 ELNNLSKLTSLEILIED 237 (508)
Q Consensus 221 ~l~~l~~L~~L~l~~~~ 237 (508)
-++.++.|+.|+++|+.
T Consensus 255 l~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHhhhhHhhcCchHhh
Confidence 45677777777777775
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.4e-09 Score=94.17 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=25.5
Q ss_pred cccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCC
Q 047733 294 QLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENS 333 (508)
Q Consensus 294 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 333 (508)
.++.|++|.++.|.++..... ......|.|.+|++.+|-
T Consensus 336 kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hcchheeeehhhhcCCChHHe-eeeccCcceEEEEecccc
Confidence 567788888877766543221 234667888888887764
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=4.3e-07 Score=64.09 Aligned_cols=56 Identities=29% Similarity=0.408 Sum_probs=32.1
Q ss_pred CccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCC
Q 047733 98 ELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSD 153 (508)
Q Consensus 98 ~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~ 153 (508)
+|++|++++|+++.+| ..|..+++|++|++++|.++. +..+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4556666666655555 345556666666666655554 3455566666666665554
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.37 E-value=5.5e-08 Score=97.68 Aligned_cols=187 Identities=21% Similarity=0.286 Sum_probs=111.2
Q ss_pred CcccEEEeecCCCCCC-CCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhc
Q 047733 39 KVCTAISLKNSNISEL-PQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR 117 (508)
Q Consensus 39 ~~lr~L~l~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~ 117 (508)
..+..++++.+.+..+ ..+..+++|+.|++.+|.+..+.. . ...+.+|++|++++|.|+.+.. +.
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~------------~-l~~~~~L~~L~ls~N~I~~i~~-l~ 137 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN------------L-LSSLVNLQVLDLSFNKITKLEG-LS 137 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhccc------------c-hhhhhcchheeccccccccccc-hh
Confidence 4455555566655542 224467777777777744433322 1 2567778888888887776543 55
Q ss_pred cCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733 118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196 (508)
Q Consensus 118 ~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 196 (508)
.+..|+.|++.+|.++.+..+..+..|+.+++++|.+..+... ...+.+++.+.+..|. +..+.. +..+..+..++
T Consensus 138 ~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~ 214 (414)
T KOG0531|consen 138 TLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLS 214 (414)
T ss_pred hccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhh
Confidence 6666777778777777766666677777788877777766543 4667777777777765 444433 23344444445
Q ss_pred eecCCCccccccCcCCCCcccchhhccCCCC--ccEEEEecccCccCCCCCccCCCccEEEE
Q 047733 197 IGESPIMWGKVGGVDGEGRNASLDELNNLSK--LTSLEILIEDEKTLPRDLSFFKMLQRYSI 256 (508)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~l~~~~~L~~L~i 256 (508)
+..+.+. .+.++..+.. |+.+++.++.....+..+..+..+..+.+
T Consensus 215 l~~n~i~--------------~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~ 262 (414)
T KOG0531|consen 215 LLDNKIS--------------KLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDL 262 (414)
T ss_pred cccccce--------------eccCcccchhHHHHHHhcccCccccccccccccccccccch
Confidence 5555543 2233333333 77888887776555443434444444443
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=1.6e-06 Score=91.39 Aligned_cols=82 Identities=24% Similarity=0.352 Sum_probs=51.4
Q ss_pred ccEEeccCCCCCC--ccccCCCCCCcEEEccCCCch-hhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEee
Q 047733 122 LQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG 198 (508)
Q Consensus 122 L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 198 (508)
++.|++++|.++. |..++++.+|+.|++++|.+. .+|..+..+++|+.|++++|.....+|.. ++.+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence 5566666666554 456666666666666666665 56666666666666666666644455554 5666666666666
Q ss_pred cCCCcc
Q 047733 199 ESPIMW 204 (508)
Q Consensus 199 ~~~~~~ 204 (508)
+|.+.+
T Consensus 499 ~N~l~g 504 (623)
T PLN03150 499 GNSLSG 504 (623)
T ss_pred CCcccc
Confidence 666553
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=5.6e-07 Score=63.48 Aligned_cols=60 Identities=27% Similarity=0.506 Sum_probs=46.0
Q ss_pred CCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCC
Q 047733 61 PQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCEL 132 (508)
Q Consensus 61 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l 132 (508)
|+|++|++.+ +.+..+|...|.++++|++|++++|.++.++ ..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~------------n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSN------------NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETS------------STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCC------------CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677788877 3455566666788888888888888888766 5778888888888888864
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.27 E-value=2.6e-06 Score=89.70 Aligned_cols=104 Identities=20% Similarity=0.314 Sum_probs=89.1
Q ss_pred CccEEEecCCcCC-CCchhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCch-hhHHHhccCCCCceEecc
Q 047733 98 ELRVLDFARMHLL-PLPSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLLDLS 173 (508)
Q Consensus 98 ~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~ 173 (508)
.++.|+|+++.+. .+|..++.+++|+.|++++|.++. |..++.+.+|+.|++++|.+. .+|..+.++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999987 688899999999999999999885 678999999999999999887 788899999999999999
Q ss_pred CCCCCCccChhhhhc-CCCCcEEEeecCCC
Q 047733 174 NCFNLKVIPPNVISS-LSQLEELYIGESPI 202 (508)
Q Consensus 174 ~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~ 202 (508)
+|.....+|.. +.. ..++..+++.+|..
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCcc
Confidence 99866778876 443 45677888877654
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.23 E-value=7.5e-08 Score=88.90 Aligned_cols=208 Identities=17% Similarity=0.193 Sum_probs=141.5
Q ss_pred CCCcccEEEeecCCCCC-----CCC-CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChh------hhhCCCCccEEEe
Q 047733 37 ALKVCTAISLKNSNISE-----LPQ-VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDK------FFTGMRELRVLDF 104 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~-----l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~L~~L~l 104 (508)
.+..++.+++++|.+.. +.. +.+-++|+..++++...+++- ..+|.. .....++|+++||
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~--------~Ei~e~L~~l~~aL~~~~~L~~ldL 99 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLK--------DEIPEALKMLSKALLGCPKLQKLDL 99 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcH--------HHHHHHHHHHHHHHhcCCceeEeec
Confidence 46789999999999831 222 226779999999885554442 223321 2256779999999
Q ss_pred cCCcCC-C----CchhhccCccccEEeccCCCCCC-c-c-------------ccCCCCCCcEEEccCCCch-----hhHH
Q 047733 105 ARMHLL-P----LPSSLRLFQNLQTLSLDYCELGD-I-A-------------IVGDLKTLVILTLRGSDME-----KLVE 159 (508)
Q Consensus 105 ~~~~~~-~----l~~~~~~l~~L~~L~l~~~~l~~-~-~-------------~i~~l~~L~~L~l~~~~i~-----~lp~ 159 (508)
|+|-+. . +-..+.++..|+.|.|.+|.+.. - . -+++-++|+.+...+|.+. .+..
T Consensus 100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~ 179 (382)
T KOG1909|consen 100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAE 179 (382)
T ss_pred cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHH
Confidence 999886 2 33456678899999999997653 1 1 2456789999999999776 4445
Q ss_pred HhccCCCCceEeccCCCCCCc---cChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecc
Q 047733 160 EIGQLTHLRLLDLSNCFNLKV---IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIE 236 (508)
Q Consensus 160 ~~~~l~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 236 (508)
.+...+.|+.+.++.|..... +....+..+++|++|++..|.++.. ........+..+++|+.+++++|
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e--------gs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE--------GSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH--------HHHHHHHHhcccchheeeccccc
Confidence 567778999999988762221 1111267899999999999887632 23345667888889999999887
Q ss_pred cCcc-----CCCCC-ccCCCccEEEEEecC
Q 047733 237 DEKT-----LPRDL-SFFKMLQRYSILIGD 260 (508)
Q Consensus 237 ~~~~-----~~~~l-~~~~~L~~L~i~~~~ 260 (508)
.... +...+ ...++|+.+.+.++.
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcch
Confidence 6221 11222 346777777665433
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.10 E-value=1.1e-06 Score=92.26 Aligned_cols=59 Identities=27% Similarity=0.381 Sum_probs=31.7
Q ss_pred hhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC---ccccCCCCCCcEEEccCC
Q 047733 93 FTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGS 152 (508)
Q Consensus 93 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~ 152 (508)
+.++++|+.||+|+++++.+ ..++++++|+.|.+++=.+.. ...+..+.+|+.||++..
T Consensus 169 c~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 34555556666665555554 345555555555555544432 244555555555555554
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.08 E-value=1.1e-06 Score=81.32 Aligned_cols=202 Identities=19% Similarity=0.261 Sum_probs=130.7
Q ss_pred CcccEEEeecCCC----CCCCC--------CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCC---hhhhhCCCCccEEE
Q 047733 39 KVCTAISLKNSNI----SELPQ--------VFECPQLKYFHIANDPSRRIPVHIANDPSRRIP---DKFFTGMRELRVLD 103 (508)
Q Consensus 39 ~~lr~L~l~~~~~----~~l~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~ 103 (508)
+.+|+.+++.--. +++|+ +..+++|++|++++| ......+ ..+...+..|+.|.
T Consensus 58 ~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN-----------A~G~~g~~~l~~ll~s~~~L~eL~ 126 (382)
T KOG1909|consen 58 KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN-----------AFGPKGIRGLEELLSSCTDLEELY 126 (382)
T ss_pred ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc-----------ccCccchHHHHHHHHhccCHHHHh
Confidence 3577777764322 33442 227889999999984 2222222 23346788899999
Q ss_pred ecCCcCCCC--------------chhhccCccccEEeccCCCCCC-c-----cccCCCCCCcEEEccCCCch-----hhH
Q 047733 104 FARMHLLPL--------------PSSLRLFQNLQTLSLDYCELGD-I-----AIVGDLKTLVILTLRGSDME-----KLV 158 (508)
Q Consensus 104 l~~~~~~~l--------------~~~~~~l~~L~~L~l~~~~l~~-~-----~~i~~l~~L~~L~l~~~~i~-----~lp 158 (508)
+.+|.++.. ..-...-+.||++...+|++-+ + ..+...+.|+.+.+++|.|. .+.
T Consensus 127 L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~ 206 (382)
T KOG1909|consen 127 LNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALA 206 (382)
T ss_pred hhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHH
Confidence 998887521 1123344578999888888654 2 34566788999999888664 345
Q ss_pred HHhccCCCCceEeccCCCCCCccCh----hhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhcc-CCCCccEEEE
Q 047733 159 EEIGQLTHLRLLDLSNCFNLKVIPP----NVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELN-NLSKLTSLEI 233 (508)
Q Consensus 159 ~~~~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l 233 (508)
..+.++++|+.|||++|. ++.... ..++.+++|+.+++..|.+. ..+..++...+. ..++|+.+.+
T Consensus 207 eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll~--------~~Ga~a~~~al~~~~p~L~vl~l 277 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLLE--------NEGAIAFVDALKESAPSLEVLEL 277 (382)
T ss_pred HHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccccc--------cccHHHHHHHHhccCCCCceecc
Confidence 667889999999998876 332211 13667888999999888876 334445555554 3578889998
Q ss_pred ecccCcc-----CCCCCccCCCccEEEEEecC
Q 047733 234 LIEDEKT-----LPRDLSFFKMLQRYSILIGD 260 (508)
Q Consensus 234 ~~~~~~~-----~~~~l~~~~~L~~L~i~~~~ 260 (508)
.+|.... +...+...+.|..|.+.++.
T Consensus 278 ~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 278 AGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred CcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 8876321 12223447778888877555
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=7.8e-07 Score=80.50 Aligned_cols=208 Identities=17% Similarity=0.184 Sum_probs=111.7
Q ss_pred cccEEeccCCCCCC---ccccC-CCCCCcEEEccCCCch---hhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCc
Q 047733 121 NLQTLSLDYCELGD---IAIVG-DLKTLVILTLRGSDME---KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLE 193 (508)
Q Consensus 121 ~L~~L~l~~~~l~~---~~~i~-~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 193 (508)
.++.+.+.+|.+.. ...++ .+..++.+|+.+|.+. ++...+.+++.|++|++++|+....+... -....+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-cccccceE
Confidence 44555666776553 33333 5678888999998776 55566789999999999988733333221 12556889
Q ss_pred EEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCC---CC-ccCCCccEEEEEecCcccCCCCCC
Q 047733 194 ELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPR---DL-SFFKMLQRYSILIGDQWAWDSPSD 269 (508)
Q Consensus 194 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~l-~~~~~L~~L~i~~~~~~~~~~~~~ 269 (508)
.|.+.++++.|... -..+..++.+++|.++.|....+-. .. .-.+.++.++...|....|..
T Consensus 125 ~lVLNgT~L~w~~~-----------~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~--- 190 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQS-----------TSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLN--- 190 (418)
T ss_pred EEEEcCCCCChhhh-----------hhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHH---
Confidence 99998888877642 2345566667777666553111000 00 011122222222222111110
Q ss_pred CccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCC
Q 047733 270 DISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPT 349 (508)
Q Consensus 270 ~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 349 (508)
.......||++..+.+..|+--+ ....-....+|.+--|++.. +++.++ +... +.
T Consensus 191 ------------------~~~l~r~Fpnv~sv~v~e~PlK~-~s~ek~se~~p~~~~LnL~~-~~idsw----asvD-~L 245 (418)
T KOG2982|consen 191 ------------------KNKLSRIFPNVNSVFVCEGPLKT-ESSEKGSEPFPSLSCLNLGA-NNIDSW----ASVD-AL 245 (418)
T ss_pred ------------------HHhHHhhcccchheeeecCcccc-hhhcccCCCCCcchhhhhcc-cccccH----HHHH-HH
Confidence 11123357777777777664222 11111224466666666655 333322 1111 55
Q ss_pred CcCcCcceeeccCcccccc
Q 047733 350 TAFPVLESLFLRDLRNLEK 368 (508)
Q Consensus 350 ~~~p~L~~L~l~~c~~l~~ 368 (508)
..||+|.-|.+.+.|-+..
T Consensus 246 n~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 246 NGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred cCCchhheeeccCCccccc
Confidence 6778888888777664433
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.06 E-value=3.5e-08 Score=99.10 Aligned_cols=104 Identities=28% Similarity=0.338 Sum_probs=50.9
Q ss_pred hCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHHhccCCCCceEe
Q 047733 94 TGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLD 171 (508)
Q Consensus 94 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~ 171 (508)
.-++.|+.|||++|++.++- .+..|++|++||+++|.++. | -....+. |+.|.+++|.++.+ .++.++.+|+.||
T Consensus 184 qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhhccc
Confidence 44555555566665555443 34555555556665555544 2 1111222 55555555555554 2455555566666
Q ss_pred ccCCCCCCccCh-hhhhcCCCCcEEEeecCC
Q 047733 172 LSNCFNLKVIPP-NVISSLSQLEELYIGESP 201 (508)
Q Consensus 172 l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~ 201 (508)
+++|- +..... ..+..+..|++|++.+|.
T Consensus 261 lsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 261 LSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 55543 211111 114445555555555544
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=7.3e-06 Score=52.98 Aligned_cols=38 Identities=32% Similarity=0.513 Sum_probs=24.7
Q ss_pred CCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC
Q 047733 97 RELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD 134 (508)
Q Consensus 97 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~ 134 (508)
++|++|++++|.++.+|..++++++|++|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 35677777777777766666777777777777776665
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.93 E-value=1.6e-06 Score=87.07 Aligned_cols=170 Identities=21% Similarity=0.340 Sum_probs=118.9
Q ss_pred cCCCcccEEEeecCCCCCCCC-CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch
Q 047733 36 DALKVCTAISLKNSNISELPQ-VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS 114 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 114 (508)
..++++..+++..|.+..+.. ...+++|+.|++++|.++.+.. +..+..|+.|++++|.++.+..
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--------------l~~l~~L~~L~l~~N~i~~~~~ 157 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--------------LSTLTLLKELNLSGNLISDISG 157 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--------------hhhccchhhheeccCcchhccC
Confidence 457889999999999998888 6689999999999966555522 3577779999999999987654
Q ss_pred hhccCccccEEeccCCCCCCccc--cCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCC-
Q 047733 115 SLRLFQNLQTLSLDYCELGDIAI--VGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQ- 191 (508)
Q Consensus 115 ~~~~l~~L~~L~l~~~~l~~~~~--i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~- 191 (508)
+..++.|+.+++++|.+..... ...+..++.+.+.+|.+..+. .+..+..+..+++..+. +..+.. +..+..
T Consensus 158 -~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~-i~~~~~--l~~~~~~ 232 (414)
T KOG0531|consen 158 -LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNK-ISKLEG--LNELVML 232 (414)
T ss_pred -CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccccc-ceeccC--cccchhH
Confidence 5568899999999999887544 688999999999999776442 23333344444555544 333322 223333
Q ss_pred -CcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733 192 -LEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED 237 (508)
Q Consensus 192 -L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 237 (508)
|+.+++.++.+... ..++..+.++..|++..+.
T Consensus 233 ~L~~l~l~~n~i~~~-------------~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 233 HLRELYLSGNRISRS-------------PEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred HHHHHhcccCccccc-------------cccccccccccccchhhcc
Confidence 77777777766511 1345556666666665544
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.91 E-value=1.1e-05 Score=85.08 Aligned_cols=103 Identities=19% Similarity=0.355 Sum_probs=55.3
Q ss_pred CCccEEEecCCcCC--CCchhhc-cCccccEEeccCCCCCC--c-cccCCCCCCcEEEccCCCchhhHHHhccCCCCceE
Q 047733 97 RELRVLDFARMHLL--PLPSSLR-LFQNLQTLSLDYCELGD--I-AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLL 170 (508)
Q Consensus 97 ~~L~~L~l~~~~~~--~l~~~~~-~l~~L~~L~l~~~~l~~--~-~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 170 (508)
.+|++||++|.+.- .=|..++ .+|.|+.|.+.+-.+.. . ....++++|..||++++.++.+ .+++++++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 55666666665331 1222333 46666666666655332 2 3344566666666666666655 456666666666
Q ss_pred eccCCCCCCccC-hhhhhcCCCCcEEEeecCC
Q 047733 171 DLSNCFNLKVIP-PNVISSLSQLEELYIGESP 201 (508)
Q Consensus 171 ~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~ 201 (508)
.+++-. +.... -..+..+++|+.|+++...
T Consensus 201 ~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 201 SMRNLE-FESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hccCCC-CCchhhHHHHhcccCCCeeeccccc
Confidence 665533 22111 1114566666666666543
No 52
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.78 E-value=6e-07 Score=92.49 Aligned_cols=168 Identities=18% Similarity=0.218 Sum_probs=76.9
Q ss_pred ccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCccc---cccccc
Q 047733 295 LKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRN---LEKICR 371 (508)
Q Consensus 295 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~---l~~~~~ 371 (508)
+++|++|.+.+|..+++.........++.|++|+++.|..+++- .... ....+|+|+.|.+..+.. +++...
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~----~l~~-~~~~c~~l~~l~~~~~~~c~~l~~~~l 342 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDS----GLEA-LLKNCPNLRELKLLSLNGCPSLTDLSL 342 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHH----HHHH-HHHhCcchhhhhhhhcCCCccHHHHHH
Confidence 55666666666655554443333455666666666666554210 0000 111245555544443332 322211
Q ss_pred Cccccccc-ccCCeEEEcCCCCcceecchhhhhccCCCc-EEeeccccch-hhhhccccCCcCCCCCCceeeccccCeeE
Q 047733 372 GPLAAESF-CQLRDMRVNGCDKLKNVFPLVIGRGLQQLQ-FIEVTECQNL-DVIFAAERGDESSNSNTQVIELTQLTILE 448 (508)
Q Consensus 372 ~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~-~L~i~~c~~L-~~i~~~~~~~~~~~~~~~~~~~~~L~~L~ 448 (508)
.... ... -.+..+.+.+|+.++++.. .... ..... .+.+.+|+.+ .++.. -...+..++.|.
T Consensus 343 ~~~~-~~~~d~~~~~~~~~~~~l~~~~l-~~~~-~~~~~~~~~l~gc~~l~~~l~~------------~~~~~~~l~~L~ 407 (482)
T KOG1947|consen 343 SGLL-TLTSDDLAELILRSCPKLTDLSL-SYCG-ISDLGLELSLRGCPNLTESLEL------------RLCRSDSLRVLN 407 (482)
T ss_pred HHhh-ccCchhHhHHHHhcCCCcchhhh-hhhh-ccCcchHHHhcCCcccchHHHH------------HhccCCccceEe
Confidence 0000 001 1344444444444444321 1111 12222 4555666666 22221 111233377888
Q ss_pred cCCCccccccccCccccccCCccEEEEeeCCCcc
Q 047733 449 LCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVK 482 (508)
Q Consensus 449 l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~~l~ 482 (508)
+..|...+..........+..++.+++.+|+..+
T Consensus 408 l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 408 LSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cccCccccccchHHHhhhhhccccCCccCccccc
Confidence 8888777665444333225667777777777654
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=3.4e-05 Score=49.86 Aligned_cols=38 Identities=32% Similarity=0.396 Sum_probs=20.4
Q ss_pred CCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCcc
Q 047733 143 TLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVI 181 (508)
Q Consensus 143 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~ 181 (508)
+|++|++++|.++++|..+.+|++|++|++++|. +.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 4555666666555555555566666666666554 4443
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.76 E-value=4.3e-05 Score=65.64 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=27.3
Q ss_pred hCCCCccEEEecCCcCCCCchhhcc-CccccEEeccCCCCCC---ccccCCCCCCcEEEccCCCch
Q 047733 94 TGMRELRVLDFARMHLLPLPSSLRL-FQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSDME 155 (508)
Q Consensus 94 ~~l~~L~~L~l~~~~~~~l~~~~~~-l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~ 155 (508)
..++.|..|.+..|.|..+-..+.. +++|+.|.+.+|.+.+ ...+..++.|++|.+-+|.++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchh
Confidence 3444455555555544443333332 3334445554444332 233444444444444444433
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.73 E-value=1.1e-06 Score=88.61 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=90.3
Q ss_pred CCCcccEEEeecCCCCCCCCCCC-CCCCcEEEcCCCC--CCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 37 ALKVCTAISLKNSNISELPQVFE-CPQLKYFHIANDP--SRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~~~~~-~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
-+..+|+|-+.++.+..+.-+.. -..|+.|....-- .+++-. ...+.+.++. ...+|.+.++++|.+..+-
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~a----scggd~~ns~--~Wn~L~~a~fsyN~L~~mD 180 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFA----SCGGDISNSP--VWNKLATASFSYNRLVLMD 180 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHH----Hhccccccch--hhhhHhhhhcchhhHHhHH
Confidence 36789999999998854433221 1244444433200 000000 0111111111 1245666677777766666
Q ss_pred hhhccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCCCC
Q 047733 114 SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQL 192 (508)
Q Consensus 114 ~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 192 (508)
.++.-++.|+.|+|++|++++...+..+++|++|||++|.+..+|.. ...+ .|+.|++++|. ++.+-. +.++.+|
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~g--ie~LksL 256 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLRG--IENLKSL 256 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhhh--HHhhhhh
Confidence 66666777777777777777655677777777777777777766632 2223 37777777766 555544 5677777
Q ss_pred cEEEeecCCCc
Q 047733 193 EELYIGESPIM 203 (508)
Q Consensus 193 ~~L~l~~~~~~ 203 (508)
+.|+++.|-+.
T Consensus 257 ~~LDlsyNll~ 267 (1096)
T KOG1859|consen 257 YGLDLSYNLLS 267 (1096)
T ss_pred hccchhHhhhh
Confidence 77777776554
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=6.8e-05 Score=72.93 Aligned_cols=130 Identities=12% Similarity=0.159 Sum_probs=81.4
Q ss_pred CCCCCcEEEEecCCCceeeeecccCCCCCCCcCc-CcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecc
Q 047733 320 GFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFP-VLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFP 398 (508)
Q Consensus 320 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p-~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 398 (508)
.+++++.|++++| .++.++ .+| +|++|.+.+|..++.++. .-.++|++|++.+|..+..+|
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP-----------~LP~sLtsL~Lsnc~nLtsLP~-----~LP~nLe~L~Ls~Cs~L~sLP- 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP-----------VLPNELTEITIENCNNLTTLPG-----SIPEGLEKLTVCHCPEISGLP- 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC-----------CCCCCCcEEEccCCCCcccCCc-----hhhhhhhheEccCcccccccc-
Confidence 3689999999998 677653 234 699999999999877653 123689999999998887664
Q ss_pred hhhhhccCCCcEEeecc--ccchhhhhcc----ccCCcCCCCCCc--eeeccccCeeEcCCCccccccccCccccccCCc
Q 047733 399 LVIGRGLQQLQFIEVTE--CQNLDVIFAA----ERGDESSNSNTQ--VIELTQLTILELCYLPQLTSFCTGDLHFEFPSL 470 (508)
Q Consensus 399 ~~~~~~l~~L~~L~i~~--c~~L~~i~~~----~~~~~~~~~~~~--~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L 470 (508)
++|+.|++.+ |..+..++.. ............ ....++|++|.+.+|..+. ++. .+. ++|
T Consensus 112 -------~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~-~LP---~SL 179 (426)
T PRK15386 112 -------ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPE-KLP---ESL 179 (426)
T ss_pred -------cccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Ccc-ccc---ccC
Confidence 3577777753 2233333221 000000000001 1122578999999987663 332 222 589
Q ss_pred cEEEEeeCC
Q 047733 471 EKLRILECP 479 (508)
Q Consensus 471 ~~L~i~~C~ 479 (508)
+.|++..+.
T Consensus 180 k~L~ls~n~ 188 (426)
T PRK15386 180 QSITLHIEQ 188 (426)
T ss_pred cEEEecccc
Confidence 999987653
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.72 E-value=1.8e-06 Score=88.91 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=55.4
Q ss_pred ccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecC-CCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCc
Q 047733 295 LKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVEN-SNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGP 373 (508)
Q Consensus 295 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~ 373 (508)
.++|+.+.+.+|..+++.........++.|+.|++.+| ..+..... .... ....+++|+.|.+..|..+++.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~--~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL-LLLL--LLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh-Hhhh--hhhhcCCcCccchhhhhccCchhHHH
Confidence 45566666655555554322122244556666665542 22111100 0000 12234555666665555444332111
Q ss_pred ccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccch
Q 047733 374 LAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNL 419 (508)
Q Consensus 374 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L 419 (508)
+. ..+++|++|.+.+|..+++.....+...+++|++|++++|..+
T Consensus 264 l~-~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 264 LA-SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HH-hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 11 2255666666555655555444444555566666666665554
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.67 E-value=0.00017 Score=70.26 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=34.8
Q ss_pred CCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccc-cccccCccccccCCccEEEEeeCCCc
Q 047733 406 QQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQL-TSFCTGDLHFEFPSLEKLRILECPQV 481 (508)
Q Consensus 406 ~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~~~~~~~~~~~p~L~~L~i~~C~~l 481 (508)
++|++|.+.+|..+. . +.. ..++|+.|.+..+... ..+....+. +.+ .|++.+|.++
T Consensus 156 sSLk~L~Is~c~~i~-L------------P~~--LP~SLk~L~ls~n~~~sLeI~~~sLP---~nl-~L~f~n~lkL 213 (426)
T PRK15386 156 PSLKTLSLTGCSNII-L------------PEK--LPESLQSITLHIEQKTTWNISFEGFP---DGL-DIDLQNSVLL 213 (426)
T ss_pred CcccEEEecCCCccc-C------------ccc--ccccCcEEEecccccccccCcccccc---ccc-Eechhhhccc
Confidence 589999999988552 1 111 2368999999875311 122222222 456 8888888654
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.65 E-value=3.4e-06 Score=67.63 Aligned_cols=108 Identities=15% Similarity=0.265 Sum_probs=68.7
Q ss_pred ccEEEeecCCCCCCCC----CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733 41 CTAISLKNSNISELPQ----VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL 116 (508)
Q Consensus 41 lr~L~l~~~~~~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 116 (508)
.-.+++++|.+..++. +.....|...++++ +...++|..+-.+++-+..+++++|+++++|..+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~------------N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~ 96 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD------------NGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL 96 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEeccc------------chhhhCCHHHhhccchhhhhhcchhhhhhchHHH
Confidence 4456666666643332 22455666666666 4445555555556667777777777777777667
Q ss_pred ccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHH
Q 047733 117 RLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEE 160 (508)
Q Consensus 117 ~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~ 160 (508)
..++.|+.|+++.|++.. |..+..+.+|-+|+..++.+..+|-.
T Consensus 97 Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 97 AAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 777777777777777655 66666677777777777766655544
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=3.5e-05 Score=70.03 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=32.2
Q ss_pred CCCCceEeccCCCCCCccCh-hhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733 164 LTHLRLLDLSNCFNLKVIPP-NVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED 237 (508)
Q Consensus 164 l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 237 (508)
++++..+.+..|+ +++... .....+|.+..|++..+++. ..+.++++..++.|+.|.+..+.
T Consensus 198 Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~id-----------swasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 198 FPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANNID-----------SWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cccchheeeecCc-ccchhhcccCCCCCcchhhhhcccccc-----------cHHHHHHHcCCchhheeeccCCc
Confidence 4455555555554 333221 11234555555555555442 22345666777777777776655
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.49 E-value=2.1e-05 Score=63.22 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=49.2
Q ss_pred hCCCCccEEEecCCcCCCCchhhc-cCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEe
Q 047733 94 TGMRELRVLDFARMHLLPLPSSLR-LFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLD 171 (508)
Q Consensus 94 ~~l~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~ 171 (508)
.+..+|...++++|.+.++|+.|. ..+-++++++.+|++++ |..+..++.|+.|+++.|.+...|+.+..+.+|..|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 445556666666666666665544 23456666666666666 5556666666666666666666665555555666665
Q ss_pred ccCCC
Q 047733 172 LSNCF 176 (508)
Q Consensus 172 l~~~~ 176 (508)
..++.
T Consensus 130 s~~na 134 (177)
T KOG4579|consen 130 SPENA 134 (177)
T ss_pred CCCCc
Confidence 55544
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.45 E-value=0.00025 Score=61.05 Aligned_cols=103 Identities=19% Similarity=0.230 Sum_probs=80.8
Q ss_pred cccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc--hhhc
Q 047733 40 VCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP--SSLR 117 (508)
Q Consensus 40 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~~~~ 117 (508)
..-.+++..|.+..++.+-.++.|++|.+.. +.+..+...+-..+++|..|.+.+|++..+- ..+.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~n------------NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa 110 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNN------------NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA 110 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecC------------CcceeeccchhhhccccceEEecCcchhhhhhcchhc
Confidence 4667888888887777666899999999988 4555555555566889999999999986543 3467
Q ss_pred cCccccEEeccCCCCCC-----ccccCCCCCCcEEEccCCCc
Q 047733 118 LFQNLQTLSLDYCELGD-----IAIVGDLKTLVILTLRGSDM 154 (508)
Q Consensus 118 ~l~~L~~L~l~~~~l~~-----~~~i~~l~~L~~L~l~~~~i 154 (508)
.|+.|++|.+-+|+.+. ...+.++++|++||..+-..
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 89999999999998664 36788999999999877533
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=1.6e-05 Score=71.52 Aligned_cols=82 Identities=24% Similarity=0.425 Sum_probs=44.9
Q ss_pred CccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccCh-hhhhcCCCCcEEEe
Q 047733 119 FQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPP-NVISSLSQLEELYI 197 (508)
Q Consensus 119 l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l 197 (508)
+.+.+.|+..+|.++++....+++.|+.|.|+.|.|..+. .+..|++|++|+|+.|. +.++.. .-+.++|+|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 3345555666666665555556666666666666665553 34556666666666554 333332 22445566666665
Q ss_pred ecCCC
Q 047733 198 GESPI 202 (508)
Q Consensus 198 ~~~~~ 202 (508)
..|..
T Consensus 96 ~ENPC 100 (388)
T KOG2123|consen 96 DENPC 100 (388)
T ss_pred ccCCc
Confidence 55443
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.26 E-value=6.5e-05 Score=67.48 Aligned_cols=191 Identities=14% Similarity=0.099 Sum_probs=115.1
Q ss_pred CCCcccEEEeecCCCCC-----CCCC-CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCC
Q 047733 37 ALKVCTAISLKNSNISE-----LPQV-FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLL 110 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 110 (508)
.+..+..+++++|.+.+ +... .+-.+|+..+++..+.++.-..+..+.. -+... .-++++|+..++|+|-|+
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~-~Ll~a-Llkcp~l~~v~LSDNAfg 105 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLV-MLLKA-LLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHH-HHHHH-HhcCCcceeeeccccccC
Confidence 47789999999999832 2121 2567888888877444433211111100 01112 357899999999999886
Q ss_pred -CCch----hhccCccccEEeccCCCCCCc--c-------------ccCCCCCCcEEEccCCCchhhHH-----HhccCC
Q 047733 111 -PLPS----SLRLFQNLQTLSLDYCELGDI--A-------------IVGDLKTLVILTLRGSDMEKLVE-----EIGQLT 165 (508)
Q Consensus 111 -~l~~----~~~~l~~L~~L~l~~~~l~~~--~-------------~i~~l~~L~~L~l~~~~i~~lp~-----~~~~l~ 165 (508)
..|. .+++-+.|..|.+.+|.+... . -..+-+.|+.....+|.+...+. .+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 4443 455677899999998864431 1 13356788888888887764332 222335
Q ss_pred CCceEeccCCCCCCc----cChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733 166 HLRLLDLSNCFNLKV----IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED 237 (508)
Q Consensus 166 ~L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 237 (508)
+|+++.+..|..-.. +..--+..+.+|+.|+++.|.++... .......+...+.|+.|.+..|-
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g--------S~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG--------SRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh--------HHHHHHHhcccchhhhccccchh
Confidence 788888887652211 11111346778888888888776322 12344556666777777776654
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.00011 Score=66.37 Aligned_cols=100 Identities=23% Similarity=0.196 Sum_probs=53.0
Q ss_pred CCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHH--HhccCCCCceEecc
Q 047733 96 MRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVE--EIGQLTHLRLLDLS 173 (508)
Q Consensus 96 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~ 173 (508)
+.+.+.|+.-||.+..+.- ..+++.|+.|.|+-|+|+....+..+++|+.|+|..|.|.++.+ -+.++++|+.|-|.
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 3344445555554443321 22455555555555555554445555566666666665554432 24566667777666
Q ss_pred CCCCCCccCh----hhhhcCCCCcEEE
Q 047733 174 NCFNLKVIPP----NVISSLSQLEELY 196 (508)
Q Consensus 174 ~~~~~~~~~~----~~l~~l~~L~~L~ 196 (508)
.|+.....+. .++.-+|+|++|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 6654444332 2355677777765
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.79 E-value=0.003 Score=57.06 Aligned_cols=160 Identities=16% Similarity=0.246 Sum_probs=108.1
Q ss_pred CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCC---hhhhhCCCCccEEEecCCcCCCCc-----h---------hhccCc
Q 047733 58 FECPQLKYFHIANDPSRRIPVHIANDPSRRIP---DKFFTGMRELRVLDFARMHLLPLP-----S---------SLRLFQ 120 (508)
Q Consensus 58 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~l~-----~---------~~~~l~ 120 (508)
..||+|+..+++.| ......| ..+.++-..|.+|.+++|.+..+. . -..+-+
T Consensus 89 lkcp~l~~v~LSDN-----------Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp 157 (388)
T COG5238 89 LKCPRLQKVDLSDN-----------AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKP 157 (388)
T ss_pred hcCCcceeeecccc-----------ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCC
Confidence 38999999999994 3333333 234578899999999999875322 1 122346
Q ss_pred cccEEeccCCCCCC-c-----cccCCCCCCcEEEccCCCch-----h-hHHHhccCCCCceEeccCCCCCCccCh----h
Q 047733 121 NLQTLSLDYCELGD-I-----AIVGDLKTLVILTLRGSDME-----K-LVEEIGQLTHLRLLDLSNCFNLKVIPP----N 184 (508)
Q Consensus 121 ~L~~L~l~~~~l~~-~-----~~i~~l~~L~~L~l~~~~i~-----~-lp~~~~~l~~L~~L~l~~~~~~~~~~~----~ 184 (508)
.|++++...|++.. + ..+....+|+.+.+.+|.|. . +..++.++.+|+.|+++.|. ++.... .
T Consensus 158 ~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~ 236 (388)
T COG5238 158 KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLAD 236 (388)
T ss_pred CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHH
Confidence 79999999998554 3 23445578999999999776 2 23457789999999999976 333221 2
Q ss_pred hhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhcc--CCCCccEEEEeccc
Q 047733 185 VISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELN--NLSKLTSLEILIED 237 (508)
Q Consensus 185 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~ 237 (508)
.+..++.|+.|++..|-++ ..+..+++..+. .-++|..|...++.
T Consensus 237 al~~W~~lrEL~lnDClls--------~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLS--------NEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred Hhcccchhhhccccchhhc--------cccHHHHHHHhhhhcCCCccccccchhh
Confidence 3567888999999998775 233334444443 23566666666554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.69 E-value=0.00096 Score=60.01 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=54.9
Q ss_pred hCCCCccEEEecCC--cCC-CCchhhccCccccEEeccCCCCCC---ccccCCCCCCcEEEccCCCchhh---HHH-hcc
Q 047733 94 TGMRELRVLDFARM--HLL-PLPSSLRLFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSDMEKL---VEE-IGQ 163 (508)
Q Consensus 94 ~~l~~L~~L~l~~~--~~~-~l~~~~~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~~l---p~~-~~~ 163 (508)
-.+++|+.|.++.| ++. .++.....+++|+++++++|+++. ...+.++.+|..|+++.|..+.+ -.. +.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 46778888888888 333 455555666888888888888664 45566777788888888755532 222 345
Q ss_pred CCCCceEeccC
Q 047733 164 LTHLRLLDLSN 174 (508)
Q Consensus 164 l~~L~~L~l~~ 174 (508)
+++|..|+-..
T Consensus 142 l~~L~~LD~~d 152 (260)
T KOG2739|consen 142 LPSLKYLDGCD 152 (260)
T ss_pred hhhhccccccc
Confidence 67777776544
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.0012 Score=56.99 Aligned_cols=70 Identities=16% Similarity=0.253 Sum_probs=49.9
Q ss_pred CcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhh
Q 047733 350 TAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDV 421 (508)
Q Consensus 350 ~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~ 421 (508)
..+++++.|.+.+|..+.+++-..+.. ..|+|+.|+|++|+.+++-.. ....++++|+.|.+.+.+....
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhhhc
Confidence 356777888888888777776544442 668888888888888887643 4557788888888887665533
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.92 E-value=0.0048 Score=55.62 Aligned_cols=79 Identities=23% Similarity=0.257 Sum_probs=32.1
Q ss_pred cccEEeccCCCCCCccccCCCCCCcEEEccCC--Cch-hhHHHhccCCCCceEeccCCCC--CCccChhhhhcCCCCcEE
Q 047733 121 NLQTLSLDYCELGDIAIVGDLKTLVILTLRGS--DME-KLVEEIGQLTHLRLLDLSNCFN--LKVIPPNVISSLSQLEEL 195 (508)
Q Consensus 121 ~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~l~~~~~--~~~~~~~~l~~l~~L~~L 195 (508)
.|+.+++.++.++....+..+++|++|.++.| .+. .++.....+++|+++++++|+. +.++.+ +..+.+|..|
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLKSL 121 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchhhh
Confidence 33444444444333334444444455544444 222 2222233334555555544431 112222 3344444444
Q ss_pred EeecCC
Q 047733 196 YIGESP 201 (508)
Q Consensus 196 ~l~~~~ 201 (508)
++++|.
T Consensus 122 dl~n~~ 127 (260)
T KOG2739|consen 122 DLFNCS 127 (260)
T ss_pred hcccCC
Confidence 444443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.42 E-value=0.0075 Score=32.27 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=15.3
Q ss_pred CccEEEecCCcCCCCchhhcc
Q 047733 98 ELRVLDFARMHLLPLPSSLRL 118 (508)
Q Consensus 98 ~L~~L~l~~~~~~~l~~~~~~ 118 (508)
+|++||+++|.++.+|..|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477888888877777766654
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.14 E-value=0.056 Score=44.25 Aligned_cols=62 Identities=13% Similarity=0.279 Sum_probs=22.4
Q ss_pred CChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccC
Q 047733 88 IPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRG 151 (508)
Q Consensus 88 ~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~ 151 (508)
+....|..+.+|+.+++..+ +..++ ..|..+..++.+.+.. .+.. ...+..+.+|+.+.+..
T Consensus 26 I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 26 IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred eChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 33333444445555555443 33322 2344444455555533 2221 13333444455554433
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.71 E-value=0.0042 Score=53.74 Aligned_cols=43 Identities=12% Similarity=0.254 Sum_probs=20.4
Q ss_pred ccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhh
Q 047733 380 CQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVI 422 (508)
Q Consensus 380 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i 422 (508)
++++.|.+.+|..+.+.....+.+-.|+||.|+|++|+.+++-
T Consensus 125 ~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 125 RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence 4455555555555544322222233455555555555555443
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.44 E-value=0.082 Score=43.24 Aligned_cols=106 Identities=16% Similarity=0.289 Sum_probs=58.3
Q ss_pred CChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hcc
Q 047733 88 IPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQ 163 (508)
Q Consensus 88 ~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~ 163 (508)
++...|.++.+|+.+.+.. .+..+. ..|..+.+|+.+.+... +.. -..+..+..|+.+.+.. .+..++.. +..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4455678888899999885 455554 45778888898888774 555 25577777888888865 45545433 455
Q ss_pred CCCCceEeccCCCCCCccChhhhhcCCCCcEEEeec
Q 047733 164 LTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGE 199 (508)
Q Consensus 164 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 199 (508)
+++|+.+.+..+ +..++...+..+ +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 788888887652 455555546666 777776654
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.87 E-value=0.016 Score=30.98 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=7.7
Q ss_pred CcEEEccCCCchhhHH
Q 047733 144 LVILTLRGSDMEKLVE 159 (508)
Q Consensus 144 L~~L~l~~~~i~~lp~ 159 (508)
|++|++++|.++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 4455555554444443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.36 E-value=0.096 Score=25.91 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=6.5
Q ss_pred CccEEEecCCcCCCC
Q 047733 98 ELRVLDFARMHLLPL 112 (508)
Q Consensus 98 ~L~~L~l~~~~~~~l 112 (508)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555444
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=91.22 E-value=0.12 Score=28.90 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=12.7
Q ss_pred ccccCeeEcCCCccccccc
Q 047733 441 LTQLTILELCYLPQLTSFC 459 (508)
Q Consensus 441 ~~~L~~L~l~~c~~L~~~~ 459 (508)
+|+|++|++++|+++++..
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 4667777777777776653
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.26 E-value=0.038 Score=49.05 Aligned_cols=84 Identities=7% Similarity=0.050 Sum_probs=61.2
Q ss_pred CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccc
Q 047733 59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAI 137 (508)
Q Consensus 59 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~ 137 (508)
.+...+.|+++.|....+ -.. |+.+..+..||++.|.+..+|..++....++.+++..|..+. |..
T Consensus 40 ~~kr~tvld~~s~r~vn~------------~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s 106 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNL------------GKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKS 106 (326)
T ss_pred ccceeeeehhhhhHHHhh------------ccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcc
Confidence 566666677666332222 112 366777888888888888888888888888888888877666 888
Q ss_pred cCCCCCCcEEEccCCCch
Q 047733 138 VGDLKTLVILTLRGSDME 155 (508)
Q Consensus 138 i~~l~~L~~L~l~~~~i~ 155 (508)
.++.+++++++..+|.+.
T Consensus 107 ~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccccCCcchhhhccCcch
Confidence 888888888888888654
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.11 E-value=0.45 Score=26.47 Aligned_cols=19 Identities=16% Similarity=0.280 Sum_probs=14.4
Q ss_pred cCCCcEEeeccccchhhhh
Q 047733 405 LQQLQFIEVTECQNLDVIF 423 (508)
Q Consensus 405 l~~L~~L~i~~c~~L~~i~ 423 (508)
+++|++|++++|+.+++..
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 4678888888888877654
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.84 E-value=1.2 Score=24.69 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=11.7
Q ss_pred CCccEEEecCCcCCCCch
Q 047733 97 RELRVLDFARMHLLPLPS 114 (508)
Q Consensus 97 ~~L~~L~l~~~~~~~l~~ 114 (508)
.+|++|++++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456667777776666664
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.84 E-value=1.2 Score=24.69 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=11.7
Q ss_pred CCccEEEecCCcCCCCch
Q 047733 97 RELRVLDFARMHLLPLPS 114 (508)
Q Consensus 97 ~~L~~L~l~~~~~~~l~~ 114 (508)
.+|++|++++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456667777776666664
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=78.15 E-value=0.078 Score=47.15 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=49.7
Q ss_pred hCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEec
Q 047733 94 TGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDL 172 (508)
Q Consensus 94 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l 172 (508)
..++...+||++.|..-.+-..|+-++.|..++++.+.+.. |..++....++.+++..|..+..|.+..+.++++.++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 45666777777777655555555555566666666555554 55555555566666666656666655566666666655
Q ss_pred cCCC
Q 047733 173 SNCF 176 (508)
Q Consensus 173 ~~~~ 176 (508)
..+.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 5544
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=62.80 E-value=7.6 Score=20.81 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=6.4
Q ss_pred CCCcEEEccCCCch
Q 047733 142 KTLVILTLRGSDME 155 (508)
Q Consensus 142 ~~L~~L~l~~~~i~ 155 (508)
++|++|++++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 44555555555554
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=61.34 E-value=0.26 Score=50.13 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=8.0
Q ss_pred hhccCccccEEeccCCC
Q 047733 115 SLRLFQNLQTLSLDYCE 131 (508)
Q Consensus 115 ~~~~l~~L~~L~l~~~~ 131 (508)
.+....+++.++++.|.
T Consensus 167 ~L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNG 183 (478)
T ss_pred HHhcccchhHHHHHhcc
Confidence 33344445555555444
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=60.34 E-value=5.9 Score=22.05 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=12.8
Q ss_pred CCccEEEecCCcCCCCch
Q 047733 97 RELRVLDFARMHLLPLPS 114 (508)
Q Consensus 97 ~~L~~L~l~~~~~~~l~~ 114 (508)
.+|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777775
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=52.59 E-value=11 Score=21.01 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=7.1
Q ss_pred CCccEEEecCCcCC
Q 047733 97 RELRVLDFARMHLL 110 (508)
Q Consensus 97 ~~L~~L~l~~~~~~ 110 (508)
.+|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555543
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=48.37 E-value=14 Score=20.86 Aligned_cols=14 Identities=36% Similarity=0.387 Sum_probs=8.6
Q ss_pred CCccEEEecCCcCC
Q 047733 97 RELRVLDFARMHLL 110 (508)
Q Consensus 97 ~~L~~L~l~~~~~~ 110 (508)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666666666654
No 87
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=23.02 E-value=37 Score=13.71 Aligned_cols=6 Identities=50% Similarity=1.104 Sum_probs=3.2
Q ss_pred EeeCCC
Q 047733 475 ILECPQ 480 (508)
Q Consensus 475 i~~C~~ 480 (508)
|++||.
T Consensus 3 i~nCP~ 8 (9)
T PF00220_consen 3 IRNCPI 8 (9)
T ss_pred cccCCC
Confidence 455653
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.48 E-value=67 Score=33.04 Aligned_cols=12 Identities=25% Similarity=0.205 Sum_probs=6.5
Q ss_pred CCCCcEEEccCC
Q 047733 141 LKTLVILTLRGS 152 (508)
Q Consensus 141 l~~L~~L~l~~~ 152 (508)
.++|..|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 455555555555
Done!