Query 047733
Match_columns 508
No_of_seqs 196 out of 2479
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 03:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 100.0 7.8E-29 2.7E-33 261.2 28.1 429 36-502 29-551 (606)
2 2z63_A TOLL-like receptor 4, v 100.0 1.5E-28 5.2E-33 257.1 28.8 351 36-417 25-456 (570)
3 3t6q_A CD180 antigen; protein- 100.0 4.4E-28 1.5E-32 255.4 29.7 409 36-480 30-512 (606)
4 4eco_A Uncharacterized protein 100.0 1.3E-28 4.5E-33 259.8 24.2 409 39-482 81-601 (636)
5 3t6q_A CD180 antigen; protein- 100.0 4.1E-27 1.4E-31 248.0 29.5 391 37-480 55-535 (606)
6 4ecn_A Leucine-rich repeat pro 100.0 1.1E-27 3.7E-32 257.5 24.9 410 38-483 322-842 (876)
7 3vq2_A TLR4, TOLL-like recepto 100.0 8.4E-27 2.9E-31 245.6 26.0 151 41-205 13-168 (606)
8 1ziw_A TOLL-like receptor 3; i 99.9 3.7E-26 1.3E-30 244.0 28.8 155 36-203 22-184 (680)
9 2z63_A TOLL-like receptor 4, v 99.9 2.8E-26 9.6E-31 239.9 27.3 385 37-479 50-529 (570)
10 3rgz_A Protein brassinosteroid 99.9 8.1E-27 2.8E-31 251.7 23.9 353 36-416 97-476 (768)
11 1o6v_A Internalin A; bacterial 99.9 3.7E-26 1.2E-30 232.7 26.3 343 38-480 45-387 (466)
12 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-26 6.6E-31 239.9 23.2 153 36-201 23-183 (549)
13 3rgz_A Protein brassinosteroid 99.9 7.7E-27 2.6E-31 251.9 20.1 405 37-479 221-715 (768)
14 1ziw_A TOLL-like receptor 3; i 99.9 3.3E-25 1.1E-29 236.6 32.0 140 37-189 47-194 (680)
15 4ecn_A Leucine-rich repeat pro 99.9 3.8E-26 1.3E-30 245.6 23.2 387 54-484 440-875 (876)
16 4eco_A Uncharacterized protein 99.9 1.5E-26 5E-31 244.2 19.5 385 54-483 198-634 (636)
17 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-25 5.8E-30 231.2 25.7 122 39-176 21-149 (520)
18 3j0a_A TOLL-like receptor 5; m 99.9 3.4E-25 1.2E-29 241.5 28.4 286 31-332 18-372 (844)
19 2z81_A CD282 antigen, TOLL-lik 99.9 1.7E-25 5.9E-30 232.8 20.3 192 44-260 10-207 (549)
20 4fmz_A Internalin; leucine ric 99.9 9.4E-25 3.2E-29 213.6 21.8 301 38-453 43-344 (347)
21 2z7x_B TOLL-like receptor 1, v 99.9 5.7E-24 2E-28 219.7 26.3 386 42-478 3-454 (520)
22 1o6v_A Internalin A; bacterial 99.9 5.1E-24 1.8E-28 216.8 25.4 326 36-458 65-390 (466)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.4E-24 2.5E-28 220.9 25.5 143 41-202 33-181 (562)
24 3v47_A TOLL-like receptor 5B a 99.9 4.9E-23 1.7E-27 209.1 30.9 361 43-479 14-406 (455)
25 3j0a_A TOLL-like receptor 5; m 99.9 1.6E-23 5.4E-28 228.3 27.2 299 42-364 7-373 (844)
26 4g8a_A TOLL-like receptor 4; l 99.9 8.2E-23 2.8E-27 216.2 29.5 135 36-183 49-190 (635)
27 3v47_A TOLL-like receptor 5B a 99.9 7.8E-24 2.7E-28 215.0 20.5 364 37-453 28-406 (455)
28 3o6n_A APL1; leucine-rich repe 99.9 1E-23 3.5E-28 209.6 20.5 303 59-452 43-349 (390)
29 4fmz_A Internalin; leucine ric 99.9 2.2E-23 7.7E-28 203.8 21.8 281 36-417 63-344 (347)
30 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-22 3.8E-27 205.5 27.5 302 37-415 40-348 (457)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.5E-22 5.1E-27 211.0 27.5 149 59-238 29-181 (562)
32 3bz5_A Internalin-J, INLJ; leu 99.9 4E-23 1.4E-27 208.8 21.8 274 58-421 39-322 (457)
33 3o6n_A APL1; leucine-rich repe 99.9 8.4E-23 2.9E-27 203.0 22.6 301 38-417 44-350 (390)
34 3oja_B Anopheles plasmodium-re 99.9 8E-23 2.7E-27 214.3 20.7 304 59-453 49-356 (597)
35 3ogk_B Coronatine-insensitive 99.9 8.2E-24 2.8E-28 222.2 7.3 401 38-479 72-524 (592)
36 1jl5_A Outer protein YOPM; leu 99.9 4E-22 1.4E-26 201.3 19.0 35 38-72 10-45 (454)
37 2id5_A Lingo-1, leucine rich r 99.9 5.1E-21 1.7E-25 195.4 27.2 154 37-203 30-189 (477)
38 3oja_B Anopheles plasmodium-re 99.9 1.2E-21 4E-26 205.5 22.6 301 38-417 50-356 (597)
39 2id5_A Lingo-1, leucine rich r 99.9 2.1E-21 7.2E-26 198.2 23.0 313 41-391 13-331 (477)
40 1jl5_A Outer protein YOPM; leu 99.9 7.2E-21 2.5E-25 192.1 26.5 296 41-417 73-368 (454)
41 4g8a_A TOLL-like receptor 4; l 99.9 8.7E-21 3E-25 200.7 26.0 146 44-204 36-187 (635)
42 2p1m_B Transport inhibitor res 99.9 1.2E-23 4.2E-28 220.9 0.2 404 38-480 65-518 (594)
43 3ogk_B Coronatine-insensitive 99.8 3.5E-23 1.2E-27 217.4 -2.2 402 37-478 110-548 (592)
44 2ft3_A Biglycan; proteoglycan, 99.8 4.4E-20 1.5E-24 179.2 19.7 122 40-176 34-158 (332)
45 4fcg_A Uncharacterized protein 99.8 3.2E-20 1.1E-24 179.5 16.8 90 95-184 79-169 (328)
46 1xku_A Decorin; proteoglycan, 99.8 2.2E-19 7.5E-24 174.1 22.7 187 40-257 32-224 (330)
47 4fcg_A Uncharacterized protein 99.8 6.7E-20 2.3E-24 177.2 17.5 189 38-253 80-281 (328)
48 1xku_A Decorin; proteoglycan, 99.8 4.5E-19 1.5E-23 171.9 21.2 268 36-363 49-329 (330)
49 2ft3_A Biglycan; proteoglycan, 99.8 4.7E-19 1.6E-23 171.9 17.0 268 36-364 51-331 (332)
50 1ogq_A PGIP-2, polygalacturona 99.8 5.5E-20 1.9E-24 176.7 9.7 246 39-335 50-304 (313)
51 2p1m_B Transport inhibitor res 99.8 8.8E-22 3E-26 206.8 -3.5 396 38-476 104-539 (594)
52 1ogq_A PGIP-2, polygalacturona 99.8 2.5E-19 8.5E-24 172.1 12.9 171 61-257 50-229 (313)
53 1z7x_W Ribonuclease inhibitor; 99.8 2.2E-22 7.6E-27 204.6 -9.6 393 38-480 2-439 (461)
54 3g06_A SSPH2 (leucine-rich rep 99.8 1.3E-17 4.5E-22 173.6 24.5 255 39-417 40-295 (622)
55 2z80_A TOLL-like receptor 2, v 99.8 8.1E-19 2.8E-23 171.7 14.4 147 44-203 36-187 (353)
56 2z66_A Variable lymphocyte rec 99.8 2.5E-18 8.6E-23 164.7 17.3 190 42-256 10-206 (306)
57 1ozn_A Reticulon 4 receptor; N 99.8 6.8E-19 2.3E-23 166.9 11.7 153 38-203 31-190 (285)
58 3zyj_A Leucine-rich repeat-con 99.8 7.6E-18 2.6E-22 169.9 18.8 241 41-333 45-290 (440)
59 2z80_A TOLL-like receptor 2, v 99.8 4.8E-18 1.6E-22 166.2 15.9 181 36-242 49-238 (353)
60 3zyi_A Leucine-rich repeat-con 99.8 6.7E-18 2.3E-22 170.9 17.3 241 41-333 56-301 (452)
61 1h6u_A Internalin H; cell adhe 99.8 1.8E-17 6.1E-22 158.7 17.7 190 37-260 39-228 (308)
62 3g06_A SSPH2 (leucine-rich rep 99.7 5E-17 1.7E-21 169.2 21.3 116 295-453 180-295 (622)
63 1z7x_W Ribonuclease inhibitor; 99.7 2.3E-20 7.8E-25 189.7 -3.9 362 37-453 26-438 (461)
64 1ozn_A Reticulon 4 receptor; N 99.7 5.2E-17 1.8E-21 153.8 19.2 190 41-256 13-208 (285)
65 1p9a_G Platelet glycoprotein I 99.7 3E-17 1E-21 155.6 16.4 196 37-259 8-205 (290)
66 3o53_A Protein LRIM1, AGAP0063 99.7 1.8E-18 6.1E-23 166.5 8.0 108 88-203 25-133 (317)
67 2z66_A Variable lymphocyte rec 99.7 2.4E-17 8.2E-22 157.9 14.8 185 36-243 25-216 (306)
68 2o6q_A Variable lymphocyte rec 99.7 8.7E-17 3E-21 151.0 18.0 195 39-259 16-215 (270)
69 2o6q_A Variable lymphocyte rec 99.7 9.1E-17 3.1E-21 150.8 17.5 178 36-238 34-217 (270)
70 3zyj_A Leucine-rich repeat-con 99.7 7.7E-17 2.6E-21 162.5 17.6 197 36-259 61-265 (440)
71 2z62_A TOLL-like receptor 4, v 99.7 4.6E-17 1.6E-21 153.4 14.7 199 36-260 25-235 (276)
72 3zyi_A Leucine-rich repeat-con 99.7 8.7E-17 3E-21 162.7 17.5 198 36-260 72-277 (452)
73 3rfs_A Internalin B, repeat mo 99.7 3.4E-16 1.2E-20 147.0 17.0 175 37-238 39-217 (272)
74 1h6u_A Internalin H; cell adhe 99.7 4.8E-16 1.7E-20 148.7 17.6 175 36-243 60-234 (308)
75 3o53_A Protein LRIM1, AGAP0063 99.7 8.6E-18 2.9E-22 161.7 4.7 239 38-336 33-276 (317)
76 1h6t_A Internalin B; cell adhe 99.7 3.8E-16 1.3E-20 148.1 16.0 170 38-240 45-214 (291)
77 2xwt_C Thyrotropin receptor; s 99.7 1.6E-16 5.4E-21 146.4 12.7 194 37-257 29-234 (239)
78 3rfs_A Internalin B, repeat mo 99.7 1.5E-16 5.2E-21 149.5 12.4 182 36-249 60-246 (272)
79 1wwl_A Monocyte differentiatio 99.7 8E-17 2.7E-21 154.6 10.4 218 39-306 63-306 (312)
80 1p9a_G Platelet glycoprotein I 99.7 3.3E-16 1.1E-20 148.4 13.7 175 36-238 28-207 (290)
81 3m19_A Variable lymphocyte rec 99.7 1.4E-15 4.6E-20 141.2 16.3 174 40-239 15-192 (251)
82 2z62_A TOLL-like receptor 4, v 99.7 2.4E-15 8E-20 141.7 17.6 175 44-242 12-193 (276)
83 3oja_A Leucine-rich immune mol 99.7 1.3E-16 4.5E-21 162.5 8.6 233 38-330 33-270 (487)
84 1h6t_A Internalin B; cell adhe 99.6 4.9E-16 1.7E-20 147.4 11.8 187 40-260 25-211 (291)
85 1wwl_A Monocyte differentiatio 99.6 1.1E-15 3.7E-20 146.7 14.1 191 38-258 94-305 (312)
86 1m9s_A Internalin B; cell inva 99.6 3.5E-15 1.2E-19 155.1 16.1 173 37-242 41-213 (605)
87 3m19_A Variable lymphocyte rec 99.6 4.5E-15 1.5E-19 137.6 15.0 155 36-203 32-192 (251)
88 4ezg_A Putative uncharacterize 99.6 2.1E-15 7.2E-20 134.3 12.2 127 94-237 63-192 (197)
89 2xwt_C Thyrotropin receptor; s 99.6 1.3E-15 4.3E-20 140.3 11.0 183 48-258 20-214 (239)
90 1xeu_A Internalin C; cellular 99.6 1.6E-15 5.5E-20 141.5 9.8 171 38-242 18-188 (263)
91 2o6s_A Variable lymphocyte rec 99.6 5.3E-15 1.8E-19 133.0 12.5 147 42-202 10-160 (208)
92 4ezg_A Putative uncharacterize 99.6 1.3E-14 4.3E-19 129.3 13.4 149 37-203 42-194 (197)
93 4glp_A Monocyte differentiatio 99.6 1E-14 3.5E-19 139.8 12.9 218 40-281 65-303 (310)
94 3oja_A Leucine-rich immune mol 99.6 2E-15 7E-20 153.7 8.5 189 36-259 55-247 (487)
95 1m9s_A Internalin B; cell inva 99.6 3E-15 1E-19 155.6 9.1 188 39-260 21-208 (605)
96 3e6j_A Variable lymphocyte rec 99.6 3.6E-14 1.2E-18 129.5 14.7 149 41-203 21-172 (229)
97 2ast_B S-phase kinase-associat 99.6 2.4E-15 8.3E-20 145.9 7.1 103 97-200 70-178 (336)
98 4glp_A Monocyte differentiatio 99.5 8.1E-15 2.8E-19 140.5 9.1 80 97-176 91-180 (310)
99 2ca6_A RAN GTPase-activating p 99.5 8.9E-16 3E-20 152.0 2.5 108 94-202 91-228 (386)
100 4ay9_X Follicle-stimulating ho 99.5 1.5E-13 5.3E-18 133.9 17.7 102 296-415 154-255 (350)
101 2ast_B S-phase kinase-associat 99.5 7.5E-15 2.6E-19 142.4 8.2 150 39-201 70-233 (336)
102 1xeu_A Internalin C; cellular 99.5 5.1E-14 1.7E-18 131.3 13.3 147 37-203 39-185 (263)
103 2v9t_B SLIT homolog 2 protein 99.5 4.9E-14 1.7E-18 127.7 12.4 148 42-203 14-165 (220)
104 3cvr_A Invasion plasmid antige 99.5 1.1E-13 3.8E-18 142.3 15.5 176 40-260 60-241 (571)
105 2v70_A SLIT-2, SLIT homolog 2 99.5 7.4E-14 2.5E-18 126.5 12.5 149 42-203 14-166 (220)
106 2o6s_A Variable lymphocyte rec 99.5 5.1E-14 1.8E-18 126.5 10.5 151 36-206 25-181 (208)
107 2ca6_A RAN GTPase-activating p 99.5 7E-15 2.4E-19 145.5 2.6 63 294-364 242-314 (386)
108 4ay9_X Follicle-stimulating ho 99.5 1.9E-13 6.5E-18 133.2 12.6 196 36-257 27-231 (350)
109 2xot_A Amphoterin-induced prot 99.5 1.1E-13 3.9E-18 135.4 10.5 148 42-203 21-176 (361)
110 3goz_A Leucine-rich repeat-con 99.5 8.5E-14 2.9E-18 136.4 9.1 203 37-260 20-264 (362)
111 2ell_A Acidic leucine-rich nuc 99.5 2.3E-13 8E-18 117.7 10.6 138 96-243 23-164 (168)
112 3goz_A Leucine-rich repeat-con 99.5 8.4E-14 2.9E-18 136.4 8.4 109 94-203 47-180 (362)
113 2v9t_B SLIT homolog 2 protein 99.4 4.2E-13 1.4E-17 121.5 11.8 128 97-237 32-163 (220)
114 2xot_A Amphoterin-induced prot 99.4 2.9E-13 9.8E-18 132.5 11.4 155 36-203 36-202 (361)
115 2v70_A SLIT-2, SLIT homolog 2 99.4 8.6E-13 2.9E-17 119.5 12.9 128 97-237 32-164 (220)
116 2ell_A Acidic leucine-rich nuc 99.4 4.5E-13 1.5E-17 115.9 10.1 130 38-182 23-163 (168)
117 3e6j_A Variable lymphocyte rec 99.4 1.1E-12 3.7E-17 119.6 12.2 132 36-179 37-173 (229)
118 3cvr_A Invasion plasmid antige 99.4 1.3E-12 4.3E-17 134.5 14.0 157 37-238 78-242 (571)
119 2je0_A Acidic leucine-rich nuc 99.4 9.1E-13 3.1E-17 111.5 9.3 122 38-173 16-148 (149)
120 2je0_A Acidic leucine-rich nuc 99.4 6.6E-13 2.3E-17 112.3 8.1 107 96-203 16-126 (149)
121 1a9n_A U2A', U2A'; complex (nu 99.3 1.9E-12 6.6E-17 112.8 8.8 123 39-175 19-150 (176)
122 1a9n_A U2A', U2A'; complex (nu 99.3 1.7E-12 5.8E-17 113.1 8.0 131 57-202 15-152 (176)
123 4b8c_D Glucose-repressible alc 99.3 2.4E-12 8.1E-17 137.2 9.1 158 38-205 172-331 (727)
124 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4.1E-16 109.3 11.7 104 98-202 32-138 (193)
125 1w8a_A SLIT protein; signaling 99.3 8.9E-12 3E-16 110.2 9.4 122 42-176 11-137 (192)
126 1w8a_A SLIT protein; signaling 99.3 2.2E-11 7.6E-16 107.6 10.8 126 64-205 11-141 (192)
127 2wfh_A SLIT homolog 2 protein 99.2 4.1E-11 1.4E-15 105.9 11.8 121 42-176 13-137 (193)
128 4b8c_D Glucose-repressible alc 99.2 2.5E-12 8.7E-17 137.0 3.8 131 59-203 222-354 (727)
129 2o6r_A Variable lymphocyte rec 99.2 6.1E-11 2.1E-15 103.3 11.4 122 42-176 10-135 (177)
130 1dce_A Protein (RAB geranylger 99.2 4.2E-11 1.4E-15 123.6 10.8 150 92-255 404-566 (567)
131 1ds9_A Outer arm dynein; leuci 99.2 1.1E-12 3.7E-17 116.7 -1.2 106 94-202 45-152 (198)
132 2o6r_A Variable lymphocyte rec 99.2 1.3E-10 4.4E-15 101.2 12.0 107 96-203 27-137 (177)
133 1dce_A Protein (RAB geranylger 99.2 8.4E-11 2.9E-15 121.4 11.0 123 98-233 442-567 (567)
134 1ds9_A Outer arm dynein; leuci 99.1 2.2E-12 7.4E-17 114.8 -2.4 141 41-196 25-180 (198)
135 2r9u_A Variable lymphocyte rec 99.1 4.5E-10 1.5E-14 97.3 9.0 100 100-202 15-117 (174)
136 3g39_A Variable lymphocyte rec 99.0 4.7E-10 1.6E-14 96.9 8.8 102 99-203 11-115 (170)
137 3sb4_A Hypothetical leucine ri 99.0 9.8E-10 3.4E-14 105.8 9.6 79 164-257 225-305 (329)
138 2r9u_A Variable lymphocyte rec 99.0 1.8E-09 6E-14 93.5 9.9 101 42-155 15-118 (174)
139 3g39_A Variable lymphocyte rec 99.0 5E-09 1.7E-13 90.3 11.7 101 41-154 11-114 (170)
140 3un9_A NLR family member X1; l 98.9 6.2E-10 2.1E-14 108.7 3.6 163 60-238 71-251 (372)
141 3sb4_A Hypothetical leucine ri 98.9 1E-08 3.4E-13 98.7 11.4 250 38-329 24-328 (329)
142 3un9_A NLR family member X1; l 98.7 2.7E-09 9.4E-14 104.2 2.9 155 37-203 70-252 (372)
143 3e4g_A ATP synthase subunit S, 98.7 1.6E-09 5.6E-14 92.3 -0.1 92 381-482 62-153 (176)
144 3e4g_A ATP synthase subunit S, 98.6 6.8E-09 2.3E-13 88.5 1.8 91 354-458 62-155 (176)
145 4fdw_A Leucine rich hypothetic 98.6 2.8E-06 9.6E-11 83.6 20.6 252 84-389 123-379 (401)
146 4fdw_A Leucine rich hypothetic 98.6 7.4E-07 2.5E-11 87.8 16.3 255 39-331 113-379 (401)
147 2ifg_A High affinity nerve gro 98.6 7.8E-08 2.7E-12 93.2 8.6 91 84-176 20-114 (347)
148 2ifg_A High affinity nerve gro 98.6 2E-07 6.9E-12 90.2 10.3 103 42-155 11-116 (347)
149 4fs7_A Uncharacterized protein 98.5 5.7E-06 2E-10 81.5 19.1 302 59-414 69-374 (394)
150 2ra8_A Uncharacterized protein 98.4 1.4E-07 4.8E-12 91.3 4.8 56 93-150 168-227 (362)
151 4fs7_A Uncharacterized protein 98.4 1.1E-05 3.9E-10 79.3 17.2 313 84-476 58-374 (394)
152 1io0_A Tropomodulin; LRR prote 98.1 2.9E-06 9.8E-11 73.9 6.2 109 93-202 32-163 (185)
153 2ra8_A Uncharacterized protein 98.1 1.6E-06 5.4E-11 83.9 4.8 66 404-479 250-318 (362)
154 1io0_A Tropomodulin; LRR prote 98.0 3.2E-06 1.1E-10 73.6 4.6 116 112-237 28-162 (185)
155 3rw6_A Nuclear RNA export fact 97.8 6.8E-06 2.3E-10 75.4 3.0 78 118-196 168-257 (267)
156 4gt6_A Cell surface protein; l 97.8 0.0011 3.9E-08 64.9 19.3 107 88-198 54-168 (394)
157 4gt6_A Cell surface protein; l 97.8 0.003 1E-07 61.9 22.0 147 59-236 61-215 (394)
158 3rw6_A Nuclear RNA export fact 97.7 4.3E-05 1.5E-09 70.1 6.8 79 94-172 167-258 (267)
159 4h09_A Hypothetical leucine ri 97.5 0.0083 2.8E-07 58.2 19.4 122 59-200 44-168 (379)
160 1pgv_A TMD-1, tropomodulin TMD 95.6 0.022 7.4E-07 49.2 6.3 106 94-200 38-167 (197)
161 1pgv_A TMD-1, tropomodulin TMD 95.0 0.019 6.5E-07 49.6 4.3 116 115-237 36-168 (197)
162 4h09_A Hypothetical leucine ri 95.0 0.053 1.8E-06 52.5 7.8 102 93-198 213-318 (379)
163 3rfe_A Platelet glycoprotein I 93.1 0.16 5.5E-06 40.6 5.8 31 122-152 33-65 (130)
164 3rfe_A Platelet glycoprotein I 90.8 0.54 1.8E-05 37.4 6.5 34 98-131 32-66 (130)
165 2a5y_B CED-4; apoptosis; HET: 40.0 7 0.00024 39.5 0.5 17 1-17 456-472 (549)
166 2lz0_A Uncharacterized protein 36.9 36 0.0012 25.2 3.9 46 83-129 6-52 (100)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=7.8e-29 Score=261.16 Aligned_cols=429 Identities=18% Similarity=0.158 Sum_probs=228.9
Q ss_pred cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-
Q 047733 36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL- 112 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l- 112 (508)
++++++++|++++|.+.+++. +..+++|++|++++|. +..++...|.++++|++|++++|.++.+
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------------l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE------------IETIEDKAWHGLHHLSNLILTGNPIQSFS 96 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC------------CCEECTTTTTTCTTCCEEECTTCCCCCCC
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc------------ccccCHHHhhchhhcCEeECCCCcccccC
Confidence 466889999999999987765 4499999999999943 3344444457888888888888888765
Q ss_pred chhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCch--hhHHHhccCCCCceEeccCCCCCCccChhhhhc
Q 047733 113 PSSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDME--KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISS 188 (508)
Q Consensus 113 ~~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 188 (508)
|..|+++++|++|++++|.++. + ..++++++|++|++++|.+. .+|..+.++++|++|++++|. +..++...+..
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 175 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQF 175 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHH
T ss_pred hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhh
Confidence 6778888888888888888776 3 67888888888888888776 467778888888888888876 44444322333
Q ss_pred CC---------------------------CCcEEEeecCCCccccc--------c----------Cc-------------
Q 047733 189 LS---------------------------QLEELYIGESPIMWGKV--------G----------GV------------- 210 (508)
Q Consensus 189 l~---------------------------~L~~L~l~~~~~~~~~~--------~----------~~------------- 210 (508)
+. +|+.|++++|.+.+... + ..
T Consensus 176 l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~ 255 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255 (606)
T ss_dssp HHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred hhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence 32 44555555543320000 0 00
Q ss_pred --------------CCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceee
Q 047733 211 --------------DGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQ 276 (508)
Q Consensus 211 --------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~ 276 (508)
........+..+..+++|+.|+++++....++ .+..+++|+.|.+..+...... .. .+++++.
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~ 332 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKS 332 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCE
T ss_pred hhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccc-cC-CCCccce
Confidence 00000111122445566666666666655555 5556666666666655542222 22 4445555
Q ss_pred EEeccCccccccchhhhcccceeEEEecCCCCcccccc-CCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCc
Q 047733 277 LTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLY-GSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVL 355 (508)
Q Consensus 277 l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L 355 (508)
+.+..+...... ....+++|++|++.++ .++.... ......+++|++|++++|. ++.+.. ....+++|
T Consensus 333 L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-------~~~~l~~L 401 (606)
T 3vq2_A 333 LTLTMNKGSISF--KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA-------NFMGLEEL 401 (606)
T ss_dssp EEEESCSSCEEC--CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCS-EEEECC-------CCTTCTTC
T ss_pred eeccCCcCccch--hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCc-cccchh-------hccCCCCC
Confidence 555544221111 2224555555555544 2222210 0111345555555555532 332210 12234555
Q ss_pred ceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhcccc--------
Q 047733 356 ESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAER-------- 427 (508)
Q Consensus 356 ~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~-------- 427 (508)
+.|.+.++. +..... ......+++|++|++++|. +...++ .....+++|++|++++|.--..+.....
T Consensus 402 ~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 477 (606)
T 3vq2_A 402 QHLDFQHST-LKRVTE-FSAFLSLEKLLYLDISYTN-TKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477 (606)
T ss_dssp CEEECTTSE-EESTTT-TTTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CeeECCCCc-cCCccC-hhhhhccccCCEEECcCCC-CCccch-hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCE
Confidence 555555442 111110 0012234445555555442 222221 1223444444444444321111110000
Q ss_pred ---C--CcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCCCcccccccccCCceecC-ChHHH
Q 047733 428 ---G--DESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVKFKSSIHESTKKVFP-NLEYL 501 (508)
Q Consensus 428 ---~--~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~~l~~~~~~~~~~~~~~p-~l~~L 501 (508)
. ......+..+..+++|++|++++| +++++....+. .+++|+.|++++|.- . .+|.... .+| +|+.|
T Consensus 478 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~l~~N~l---~-~~p~~~~-~l~~~L~~l 550 (606)
T 3vq2_A 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYN-QLYSLSTLDCSFNRI---E-TSKGILQ-HFPKSLAFF 550 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTT-TCTTCCEEECTTSCC---C-CEESCGG-GSCTTCCEE
T ss_pred EECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHcc-CCCcCCEEECCCCcC---c-ccCHhHh-hhcccCcEE
Confidence 0 000000233445677788888777 55555333222 457788888887753 2 4555432 455 46666
Q ss_pred h
Q 047733 502 S 502 (508)
Q Consensus 502 ~ 502 (508)
.
T Consensus 551 ~ 551 (606)
T 3vq2_A 551 N 551 (606)
T ss_dssp E
T ss_pred E
Confidence 5
No 2
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.5e-28 Score=257.06 Aligned_cols=351 Identities=18% Similarity=0.175 Sum_probs=208.9
Q ss_pred cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
...+++++|++++|.+..++. +..+++|++|++++|. +..++...|.++++|++|++++|.++.++
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------------IQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (570)
T ss_dssp SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC------------CCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CccccccEEEccCCccCccChhHhhCCCCceEEECCCCc------------CCccCcccccCchhCCEEeCcCCcCCccC
Confidence 456789999999999987764 4489999999999943 34444444678888999999988887655
Q ss_pred -hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchh--hHHHhccCCCCceEeccCCCCCCccChhhhhc
Q 047733 114 -SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEK--LVEEIGQLTHLRLLDLSNCFNLKVIPPNVISS 188 (508)
Q Consensus 114 -~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 188 (508)
..|+.+++|++|++++|.++. + ..++++++|++|++++|.+.. +|..+.++++|++|++++|. +..++...++.
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 171 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRV 171 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHH
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccc
Confidence 678888889999988888777 3 458888888999988887774 67788888888888888876 55555433566
Q ss_pred CCCC----cEEEeecCCCccccccCcCC----------------------------------------------------
Q 047733 189 LSQL----EELYIGESPIMWGKVGGVDG---------------------------------------------------- 212 (508)
Q Consensus 189 l~~L----~~L~l~~~~~~~~~~~~~~~---------------------------------------------------- 212 (508)
+++| +.|+++.|.+....++....
T Consensus 172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 251 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred hhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence 6666 66776666554322110000
Q ss_pred -----------------CCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCcccee
Q 047733 213 -----------------EGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIF 275 (508)
Q Consensus 213 -----------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~ 275 (508)
......+..+..+++|+.|+++++....+|..+..+ +|+.+.+..+....... ..+.+++
T Consensus 252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~ 328 (570)
T 2z63_A 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLK 328 (570)
T ss_dssp GGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCC
T ss_pred ccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccC
Confidence 000112233455677777777777766677666666 77777776554332211 2344455
Q ss_pred eEEeccCccccccchhhhcccceeEEEecCCCCcccccc-CCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcC
Q 047733 276 QLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLY-GSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPV 354 (508)
Q Consensus 276 ~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~ 354 (508)
.+.+..+....... ...+++|++|++.++. ++.... ......+++|++|++++| .++.+... ...+++
T Consensus 329 ~L~l~~n~~~~~~~--~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~-------~~~l~~ 397 (570)
T 2z63_A 329 RLTFTSNKGGNAFS--EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN-------FLGLEQ 397 (570)
T ss_dssp EEEEESCBSCCBCC--CCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE-------EETCTT
T ss_pred EEeCcCCccccccc--cccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCC-cccccccc-------ccccCC
Confidence 55555433211111 1356667777776553 222210 011234566666666664 23333211 123456
Q ss_pred cceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeecccc
Q 047733 355 LESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQ 417 (508)
Q Consensus 355 L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 417 (508)
|+.|++.++. +..... ......+++|++|++++| .+...++ .....+++|++|++++|.
T Consensus 398 L~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~ 456 (570)
T 2z63_A 398 LEHLDFQHSN-LKQMSE-FSVFLSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNS 456 (570)
T ss_dssp CCEEECTTSE-EESCTT-SCTTTTCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTCE
T ss_pred CCEEEccCCc-cccccc-hhhhhcCCCCCEEeCcCC-cccccch-hhhhcCCcCcEEECcCCc
Confidence 6666666543 221110 011234556666666665 2333322 223455666666666554
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=4.4e-28 Score=255.38 Aligned_cols=409 Identities=16% Similarity=0.167 Sum_probs=240.3
Q ss_pred cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-
Q 047733 36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL- 112 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l- 112 (508)
.+.+++++|++++|.+..+++ +..+++|++|++++|.+ ..++...|.++++|++|++++|.+..+
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 97 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI------------YWIHEDTFQSQHRLDTLVLTANPLIFMA 97 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC------------CEECTTTTTTCTTCCEEECTTCCCSEEC
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc------------ceeChhhccCccccCeeeCCCCcccccC
Confidence 466789999999999987753 34999999999999433 333333347788888888888877653
Q ss_pred chhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcC
Q 047733 113 PSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSL 189 (508)
Q Consensus 113 ~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 189 (508)
|..++.+++|++|++++|.++. +..++++++|++|++++|.+..++ ..+..+++|++|++++|. +..+++..++.+
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 176 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSL 176 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTT
T ss_pred hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhh
Confidence 5677788888888888887776 466777888888888888777542 233447788888888776 566655446777
Q ss_pred CCCc--EEEeecCCCccccccCcCC----------------------------------------C--------------
Q 047733 190 SQLE--ELYIGESPIMWGKVGGVDG----------------------------------------E-------------- 213 (508)
Q Consensus 190 ~~L~--~L~l~~~~~~~~~~~~~~~----------------------------------------~-------------- 213 (508)
++|+ .|++++|.+....++.... .
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence 7777 6777776654322211000 0
Q ss_pred --------Cccc-chhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccC-CCCCCCccceeeEEeccCc
Q 047733 214 --------GRNA-SLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAW-DSPSDDISGIFQLTVASGA 283 (508)
Q Consensus 214 --------~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~-~~~~~~~~~l~~l~L~~~~ 283 (508)
.... ....++.+++|+.|+++++....+|..+..+++|+.|.+..+..... ......+++|+.+.+..+.
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence 0000 11124555666666666666556666666666666666654432221 1223334445555554432
Q ss_pred cc-cccchhhhcccceeEEEecCCCCcccccc-CCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeecc
Q 047733 284 NI-CLNGGHIMQLKGIKELCLGGSLDMKSVLY-GSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLR 361 (508)
Q Consensus 284 ~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~ 361 (508)
.. ..+......+++|++|++.++. ++.... ......+++|++|+++++. ++.+.. . ....+++|+.|++.
T Consensus 337 ~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--~----~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 337 KRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKT--E----AFKECPQLELLDLA 408 (606)
T ss_dssp SCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS-CEEECT--T----TTTTCTTCSEEECT
T ss_pred cccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCc-CCcCCH--H----HhcCCccCCeEECC
Confidence 22 2222333455666666665543 222211 1123456666666666642 332210 0 22345677777776
Q ss_pred CcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeec
Q 047733 362 DLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIEL 441 (508)
Q Consensus 362 ~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~ 441 (508)
++. ++.... ......+++|++|++++| .+...++ .....+++|++|++++++--..... . ...+..+
T Consensus 409 ~n~-l~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~--------~~~~~~l 475 (606)
T 3t6q_A 409 FTR-LKVKDA-QSPFQNLHLLKVLNLSHS-LLDISSE-QLFDGLPALQHLNLQGNHFPKGNIQ-K--------TNSLQTL 475 (606)
T ss_dssp TCC-EECCTT-CCTTTTCTTCCEEECTTC-CCBTTCT-TTTTTCTTCCEEECTTCBCGGGEEC-S--------SCGGGGC
T ss_pred CCc-CCCccc-chhhhCcccCCEEECCCC-ccCCcCH-HHHhCCCCCCEEECCCCCCCccccc-c--------chhhccC
Confidence 653 222110 111345677777777776 3444333 2345677777777777652221110 0 2345668
Q ss_pred cccCeeEcCCCccccccccCccccccCCccEEEEeeCCC
Q 047733 442 TQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQ 480 (508)
Q Consensus 442 ~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~~ 480 (508)
++|++|++++| +++++....+. .+++|+.|++++|.-
T Consensus 476 ~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 476 GRLEILVLSFC-DLSSIDQHAFT-SLKMMNHVDLSHNRL 512 (606)
T ss_dssp TTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECCSSCC
T ss_pred CCccEEECCCC-ccCccChhhhc-cccCCCEEECCCCcc
Confidence 88999999988 66666544332 568899999988853
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.3e-28 Score=259.83 Aligned_cols=409 Identities=12% Similarity=0.116 Sum_probs=291.6
Q ss_pred CcccEEEeecCCCC-CCCCC-CCCCCCcEEEcCCCCC-------C------CC---------------------CcccC-
Q 047733 39 KVCTAISLKNSNIS-ELPQV-FECPQLKYFHIANDPS-------R------RI---------------------PVHIA- 81 (508)
Q Consensus 39 ~~lr~L~l~~~~~~-~l~~~-~~~~~L~~L~l~~~~~-------~------~~---------------------~~~~~- 81 (508)
.+|+.|+++++.+. .+|+. ..+++|++|++++|.. + .+ +..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 57999999999994 56654 4999999999999843 1 00 00000
Q ss_pred -------------------------------CCCCCCCChhhhhCCCCccEEEecCCcCCC------------------C
Q 047733 82 -------------------------------NDPSRRIPDKFFTGMRELRVLDFARMHLLP------------------L 112 (508)
Q Consensus 82 -------------------------------~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------l 112 (508)
++....+|..+ +++++|++|++++|.++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHH-hcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 11222377765 899999999999999987 9
Q ss_pred chhhc--cCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCC-ch--hhHHHhccC------CCCceEeccCCCCCC
Q 047733 113 PSSLR--LFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSD-ME--KLVEEIGQL------THLRLLDLSNCFNLK 179 (508)
Q Consensus 113 ~~~~~--~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~-i~--~lp~~~~~l------~~L~~L~l~~~~~~~ 179 (508)
|..++ ++++|++|++++|.+.. |..++++++|++|++++|. ++ .+|..++.+ ++|++|++++|. +.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~ 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC
Confidence 99999 99999999999999765 7899999999999999997 87 489888876 999999999988 66
Q ss_pred ccCh--hhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCC-ccEEEE
Q 047733 180 VIPP--NVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKM-LQRYSI 256 (508)
Q Consensus 180 ~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~-L~~L~i 256 (508)
.+|. . ++.+++|++|++++|.+.+. ++ .++.+++|+.|+++++....+|..+..+++ |+.|.+
T Consensus 319 ~ip~~~~-l~~l~~L~~L~L~~N~l~g~------------ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 319 TFPVETS-LQKMKKLGMLECLYNQLEGK------------LP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384 (636)
T ss_dssp SCCCHHH-HTTCTTCCEEECCSCCCEEE------------CC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEEC
T ss_pred ccCchhh-hccCCCCCEEeCcCCcCccc------------hh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEc
Confidence 8887 5 89999999999999987633 22 577788999999999997789988988998 999999
Q ss_pred EecCcccCCCCCCCc--cceeeEEeccCccccccchhhh-------cccceeEEEecCCCCccccccCCcCCCCCCCcEE
Q 047733 257 LIGDQWAWDSPSDDI--SGIFQLTVASGANICLNGGHIM-------QLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHL 327 (508)
Q Consensus 257 ~~~~~~~~~~~~~~~--~~l~~l~L~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 327 (508)
..+............ .+|+.+.+..+........... .+++|++|++.++. ++.+... ....+++|++|
T Consensus 385 s~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~-~~~~l~~L~~L 462 (636)
T 4eco_A 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKE-LFSTGSPLSSI 462 (636)
T ss_dssp CSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTH-HHHTTCCCSEE
T ss_pred cCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHH-HHccCCCCCEE
Confidence 866644333333333 2677777766543322111111 45699999998863 4433221 12458999999
Q ss_pred EEecCCCceeeeecccCCC-CCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccC
Q 047733 328 EVVENSNLLCVVDTVDRAT-APTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQ 406 (508)
Q Consensus 328 ~l~~~~~l~~i~~~~~~~~-~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~ 406 (508)
+++++ .++.+........ .....+++|+.|+++++. ++.++.. +....+++|++|+++++ .++.+|. .+..++
T Consensus 463 ~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~~~l~~L~~L~Ls~N-~l~~ip~--~~~~l~ 536 (636)
T 4eco_A 463 NLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDD-FRATTLPYLVGIDLSYN-SFSKFPT--QPLNSS 536 (636)
T ss_dssp ECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGG-GSTTTCTTCCEEECCSS-CCSSCCC--GGGGCS
T ss_pred ECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccChh-hhhccCCCcCEEECCCC-CCCCcCh--hhhcCC
Confidence 99985 4554422110000 001123399999999864 5554321 11137899999999997 5666654 356799
Q ss_pred CCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCCCcc
Q 047733 407 QLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVK 482 (508)
Q Consensus 407 ~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~~l~ 482 (508)
+|+.|+++++..+..- ......+..+..+++|++|++++| +++.++... +++|+.|++++||-..
T Consensus 537 ~L~~L~Ls~N~~ls~N------~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~----~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 537 TLKGFGIRNQRDAQGN------RTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKI----TPNISVLDIKDNPNIS 601 (636)
T ss_dssp SCCEEECCSCBCTTCC------BCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCC----CTTCCEEECCSCTTCE
T ss_pred CCCEEECCCCcccccC------cccccChHHHhcCCCCCEEECCCC-cCCccCHhH----hCcCCEEECcCCCCcc
Confidence 9999999765411100 000011456667999999999998 568887652 2899999999998654
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=4.1e-27 Score=248.04 Aligned_cols=391 Identities=17% Similarity=0.182 Sum_probs=268.6
Q ss_pred CCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-c
Q 047733 37 ALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-P 113 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~ 113 (508)
.++++++|++++|.+..+.+ +..+++|++|++++|.+ ..++...|.++++|++|++++|.++.+ +
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l------------~~~~~~~~~~l~~L~~L~L~~n~i~~l~~ 122 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL------------IFMAETALSGPKALKHLFFIQTGISSIDF 122 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC------------SEECTTTTSSCTTCCEEECTTSCCSCGGG
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCCcc------------cccChhhhcccccccEeeccccCcccCCc
Confidence 46789999999999977643 34899999999999433 233323347788888888888888765 4
Q ss_pred hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhh-HHHhccCCCCc--eEeccCCCCCCccCh-----
Q 047733 114 SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLR--LLDLSNCFNLKVIPP----- 183 (508)
Q Consensus 114 ~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~--~L~l~~~~~~~~~~~----- 183 (508)
..++++++|++|++++|.++. +..+..+++|++|++++|.++.+ |..+..+++|+ .|++++|. +..+++
T Consensus 123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~-l~~~~~~~~~~ 201 (606)
T 3t6q_A 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND-IAGIEPGAFDS 201 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC-CCEECTTTTTT
T ss_pred chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc-cCccChhHhhh
Confidence 667788888888888888765 24555588888888888877755 45566777777 66666655 333222
Q ss_pred ----------------------------------------------------------------------hhhhcCCCCc
Q 047733 184 ----------------------------------------------------------------------NVISSLSQLE 193 (508)
Q Consensus 184 ----------------------------------------------------------------------~~l~~l~~L~ 193 (508)
..+..+++|+
T Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 281 (606)
T 3t6q_A 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281 (606)
T ss_dssp CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCS
T ss_pred ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCC
Confidence 2234445555
Q ss_pred EEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCccCCCccEEEEEecCcc-cC-CCCCCC
Q 047733 194 ELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSILIGDQW-AW-DSPSDD 270 (508)
Q Consensus 194 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~~~-~~-~~~~~~ 270 (508)
+|++++|.++ .++..+..+++|+.|+++++..... +..+..+++|+.|.+..+... .. ......
T Consensus 282 ~L~l~~n~l~-------------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 282 ELDLTATHLS-------------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp EEECTTSCCS-------------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred EEeccCCccC-------------CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 5555554443 4556788999999999999986655 456788999999999866533 12 223556
Q ss_pred ccceeeEEeccCcccccc--chhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCC
Q 047733 271 ISGIFQLTVASGANICLN--GGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAP 348 (508)
Q Consensus 271 ~~~l~~l~L~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~ 348 (508)
+++|+.+.+..+...... ......+++|++|++.++. +...... ....+++|++|+++++. ++.... .. .
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~---~~--~ 420 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTE-AFKECPQLELLDLAFTR-LKVKDA---QS--P 420 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTT-TTTTCTTCSEEECTTCC-EECCTT---CC--T
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHH-HhcCCccCCeEECCCCc-CCCccc---ch--h
Confidence 777888888765443332 3345578999999998874 3333222 23578999999999864 432211 00 2
Q ss_pred CCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcce--ecchhhhhccCCCcEEeeccccchhhhhccc
Q 047733 349 TTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKN--VFPLVIGRGLQQLQFIEVTECQNLDVIFAAE 426 (508)
Q Consensus 349 ~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~ 426 (508)
...+++|+.|+++++. +.... +.....+++|++|++++|. +.. ++.......+++|++|++++|. +..+.
T Consensus 421 ~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--- 492 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSL-LDISS--EQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSID--- 492 (606)
T ss_dssp TTTCTTCCEEECTTCC-CBTTC--TTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEEC---
T ss_pred hhCcccCCEEECCCCc-cCCcC--HHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCccC---
Confidence 4468999999999975 33322 2233568999999999984 443 3333456889999999999985 44433
Q ss_pred cCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCCC
Q 047733 427 RGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQ 480 (508)
Q Consensus 427 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~~ 480 (508)
+..+..+++|++|+++++ +++.+....+. .++.| .|++++|.-
T Consensus 493 --------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~-~l~~L-~L~L~~N~l 535 (606)
T 3t6q_A 493 --------QHAFTSLKMMNHVDLSHN-RLTSSSIEALS-HLKGI-YLNLASNHI 535 (606)
T ss_dssp --------TTTTTTCTTCCEEECCSS-CCCGGGGGGGT-TCCSC-EEECCSSCC
T ss_pred --------hhhhccccCCCEEECCCC-ccCcCChhHhC-ccccc-EEECcCCcc
Confidence 334566899999999998 67766554433 56888 999999854
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.1e-27 Score=257.51 Aligned_cols=410 Identities=13% Similarity=0.091 Sum_probs=292.2
Q ss_pred CCcccEEEeecCCCC-CCCCC-CCCCCCcEEEc-CCCCC-CCCCcc----------------------------------
Q 047733 38 LKVCTAISLKNSNIS-ELPQV-FECPQLKYFHI-ANDPS-RRIPVH---------------------------------- 79 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~-~l~~~-~~~~~L~~L~l-~~~~~-~~~~~~---------------------------------- 79 (508)
...|+.|+++++.+. .+|+. ..+++|++|++ ++|.. +..+..
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 367999999999994 56654 49999999999 66531 111100
Q ss_pred ----------------------------c--CCCCCCCCChhhhhCCCCccEEEecCCcCCC------------------
Q 047733 80 ----------------------------I--ANDPSRRIPDKFFTGMRELRVLDFARMHLLP------------------ 111 (508)
Q Consensus 80 ----------------------------~--~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------ 111 (508)
+ ..+....+|..+ +++++|++|++++|.++.
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHH-hcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 0 001111277765 899999999999999987
Q ss_pred Cchhhc--cCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCC-chh--hHHHhccCC-------CCceEeccCCCC
Q 047733 112 LPSSLR--LFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSD-MEK--LVEEIGQLT-------HLRLLDLSNCFN 177 (508)
Q Consensus 112 l~~~~~--~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~-i~~--lp~~~~~l~-------~L~~L~l~~~~~ 177 (508)
+|..++ ++++|++|++++|.+.. |..++++++|++|++++|. ++. +|..++.++ +|++|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~- 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN- 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-
Confidence 999887 99999999999999665 7889999999999999997 774 888777665 99999999988
Q ss_pred CCccCh--hhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCC-ccEE
Q 047733 178 LKVIPP--NVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKM-LQRY 254 (508)
Q Consensus 178 ~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~-L~~L 254 (508)
+..+|. . ++.+++|+.|++++|.+. .++ .++.+++|+.|++++|....+|..+..+++ |+.|
T Consensus 560 L~~ip~~~~-l~~L~~L~~L~Ls~N~l~-------------~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 560 LEEFPASAS-LQKMVKLGLLDCVHNKVR-------------HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624 (876)
T ss_dssp CCBCCCHHH-HTTCTTCCEEECTTSCCC-------------BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEE
T ss_pred CCccCChhh-hhcCCCCCEEECCCCCcc-------------cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEE
Confidence 668887 5 899999999999999876 233 688999999999999998889988988998 9999
Q ss_pred EEEecCcccCCCCCCCcc--ceeeEEeccCccccccchh---hh--cccceeEEEecCCCCccccccCCcCCCCCCCcEE
Q 047733 255 SILIGDQWAWDSPSDDIS--GIFQLTVASGANICLNGGH---IM--QLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHL 327 (508)
Q Consensus 255 ~i~~~~~~~~~~~~~~~~--~l~~l~L~~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 327 (508)
.+..+............. +|+.+.+..+........+ .. ..++|+.|++.++. ++.++... ...+++|+.|
T Consensus 625 ~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~-~~~l~~L~~L 702 (876)
T 4ecn_A 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTEL-FATGSPISTI 702 (876)
T ss_dssp ECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHH-HHTTCCCSEE
T ss_pred ECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHH-HccCCCCCEE
Confidence 998766443333333332 3777777665432211111 11 24589999998874 44432211 2368999999
Q ss_pred EEecCCCceeeeecccCCC-CCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccC
Q 047733 328 EVVENSNLLCVVDTVDRAT-APTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQ 406 (508)
Q Consensus 328 ~l~~~~~l~~i~~~~~~~~-~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~ 406 (508)
+++++ .++.++....... .....+++|+.|+++++ .++.++.. +....+++|+.|+++++ .+..+|. .+..++
T Consensus 703 ~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~-l~~~~l~~L~~L~Ls~N-~L~~lp~--~l~~L~ 776 (876)
T 4ecn_A 703 ILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDD-FRATTLPYLSNMDVSYN-CFSSFPT--QPLNSS 776 (876)
T ss_dssp ECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGG-GSTTTCTTCCEEECCSS-CCSSCCC--GGGGCT
T ss_pred ECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHH-hhhccCCCcCEEEeCCC-CCCccch--hhhcCC
Confidence 99985 5554432111100 00123459999999997 45555321 11137899999999997 5666654 346899
Q ss_pred CCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCCCccc
Q 047733 407 QLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQVKF 483 (508)
Q Consensus 407 ~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~~l~~ 483 (508)
+|+.|++++++.+..- ......+..+..+++|++|++++| ++..++... +++|+.|++++||-..+
T Consensus 777 ~L~~L~Ls~N~~ls~N------~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l----~~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 777 QLKAFGIRHQRDAEGN------RILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL----TPQLYILDIADNPNISI 842 (876)
T ss_dssp TCCEEECCCCBCTTCC------BCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCC----CSSSCEEECCSCTTCEE
T ss_pred CCCEEECCCCCCcccc------cccccChHHHhcCCCCCEEECCCC-CCCccCHhh----cCCCCEEECCCCCCCcc
Confidence 9999999875511100 000111456677999999999998 558787652 27999999999986543
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=8.4e-27 Score=245.63 Aligned_cols=151 Identities=19% Similarity=0.245 Sum_probs=126.9
Q ss_pred ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhccC
Q 047733 41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLF 119 (508)
Q Consensus 41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l 119 (508)
-+.++.+++.+..+|... .+++++|++++| ....++...|.++++|++|++++|.++.+ |..|.++
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l 79 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI-PSSTKNIDLSFN------------PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL 79 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTS------------CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCceEccCCCcccCCCCC-CCCcCEEECCCC------------CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhch
Confidence 357888888888888744 389999999993 34445544468999999999999999876 5679999
Q ss_pred ccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCC-ccChhhhhcCCCCcEE
Q 047733 120 QNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLK-VIPPNVISSLSQLEEL 195 (508)
Q Consensus 120 ~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L 195 (508)
++|++|++++|.++. |..++++++|++|++++|.+..++ ..++++++|++|++++|.... .+|.. ++.+++|++|
T Consensus 80 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L 158 (606)
T 3vq2_A 80 HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHV 158 (606)
T ss_dssp TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEE
T ss_pred hhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEE
Confidence 999999999999887 688999999999999999998776 568999999999999988333 45665 8999999999
Q ss_pred EeecCCCccc
Q 047733 196 YIGESPIMWG 205 (508)
Q Consensus 196 ~l~~~~~~~~ 205 (508)
++++|.++..
T Consensus 159 ~Ls~n~l~~~ 168 (606)
T 3vq2_A 159 DLSYNYIQTI 168 (606)
T ss_dssp ECCSSCCCEE
T ss_pred EccCCcceec
Confidence 9999987643
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=3.7e-26 Score=244.00 Aligned_cols=155 Identities=20% Similarity=0.263 Sum_probs=107.2
Q ss_pred cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
+..+++++|++++|.+..++. +..+++|++|++.+|.+ ..++...|.++++|++|++++|.++.+|
T Consensus 22 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------------~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 89 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI------------SKLEPELCQKLPMLKVLNLQHNELSQLS 89 (680)
T ss_dssp CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC------------CCCCTTHHHHCTTCCEEECCSSCCCCCC
T ss_pred ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc------------CccCHHHHhcccCcCEEECCCCccCccC
Confidence 456889999999999988876 34899999999998433 3333334467777777777777777666
Q ss_pred h-hhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhh-HHHhccCCCCceEeccCCCCCCccChhhhh--
Q 047733 114 S-SLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLRLLDLSNCFNLKVIPPNVIS-- 187 (508)
Q Consensus 114 ~-~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-- 187 (508)
. .|+++++|++|++++|.++. + ..++++++|++|++++|.+... |..+.++++|++|++++|. +..++...+.
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~ 168 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIF 168 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGG
T ss_pred hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhcc
Confidence 4 47777777777777777665 3 5677777777777777766643 3445667777777777765 5555543232
Q ss_pred cCCCCcEEEeecCCCc
Q 047733 188 SLSQLEELYIGESPIM 203 (508)
Q Consensus 188 ~l~~L~~L~l~~~~~~ 203 (508)
.+++|++|++++|.+.
T Consensus 169 ~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIK 184 (680)
T ss_dssp TTCEESEEECTTCCCC
T ss_pred ccccccEEECCCCccc
Confidence 4467777777776654
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.8e-26 Score=239.85 Aligned_cols=385 Identities=18% Similarity=0.198 Sum_probs=266.2
Q ss_pred CCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch
Q 047733 37 ALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS 114 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 114 (508)
.++++++|++++|.+.+++. +..+++|++|++.+|. ...++...|.++++|++|++++|.++.++.
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~------------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 117 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP------------IQSLALGAFSGLSSLQKLVAVETNLASLEN 117 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC------------CCEECTTTTTTCTTCCEEECTTSCCCCSTT
T ss_pred CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc------------CCccCHhhhcCccccccccccccccccCCC
Confidence 46789999999999987764 3489999999999943 334444445788888888888888877664
Q ss_pred -hhccCccccEEeccCCCCCC---ccccCCCCCCcEEEccCCCchhhH-HHhccCCCC----ceEeccCCCCCCccChhh
Q 047733 115 -SLRLFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHL----RLLDLSNCFNLKVIPPNV 185 (508)
Q Consensus 115 -~~~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L----~~L~l~~~~~~~~~~~~~ 185 (508)
.++++++|++|++++|.++. |..++++++|++|++++|.++.++ ..+..+++| +.+++++|. +..+++..
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~-l~~~~~~~ 196 (570)
T 2z63_A 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGA 196 (570)
T ss_dssp CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTT
T ss_pred ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC-ceecCHHH
Confidence 57888888888888888664 577888888888888888776443 345555555 666666655 33333321
Q ss_pred --------------------------------------------------------------------------------
Q 047733 186 -------------------------------------------------------------------------------- 185 (508)
Q Consensus 186 -------------------------------------------------------------------------------- 185 (508)
T Consensus 197 ~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 276 (570)
T 2z63_A 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276 (570)
T ss_dssp TTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTT
T ss_pred hccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchh
Confidence
Q ss_pred -hhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccC
Q 047733 186 -ISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAW 264 (508)
Q Consensus 186 -l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~ 264 (508)
+..+++|+.|++.++.+. .++..+..+ +|+.|+++++....+|.. .+++|+.+.+..+.....
T Consensus 277 ~~~~l~~L~~L~l~~~~l~-------------~l~~~~~~~-~L~~L~l~~n~~~~l~~~--~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSVTIE-------------RVKDFSYNF-GWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp TTGGGTTCSEEEEESCEEC-------------SCCBCCSCC-CCSEEEEESCBCSSCCBC--BCSSCCEEEEESCBSCCB
T ss_pred hhcCcCcccEEEecCccch-------------hhhhhhccC-CccEEeeccCcccccCcc--cccccCEEeCcCCccccc
Confidence 223344444444444332 344556677 999999999997777764 789999999987654333
Q ss_pred CCCCCCccceeeEEeccCcccccc--chhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecc
Q 047733 265 DSPSDDISGIFQLTVASGANICLN--GGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTV 342 (508)
Q Consensus 265 ~~~~~~~~~l~~l~L~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~ 342 (508)
... ..+++|+.+.+..+...... ......+++|++|++.++. +...... ...+++|++|++.++. ++.+.
T Consensus 341 ~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~--- 412 (570)
T 2z63_A 341 FSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHSN-LKQMS--- 412 (570)
T ss_dssp CCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTSE-EESCT---
T ss_pred ccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-ccccccc--ccccCCCCEEEccCCc-ccccc---
Confidence 222 55667877777765433222 2344578999999998874 4444332 3578999999999853 33221
Q ss_pred cCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCc-ceecchhhhhccCCCcEEeeccccchhh
Q 047733 343 DRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKL-KNVFPLVIGRGLQQLQFIEVTECQNLDV 421 (508)
Q Consensus 343 ~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~~~l~~L~~L~i~~c~~L~~ 421 (508)
... ....+++|+.|++++|.-.... +.....+++|++|++++|.-- ..+| .....+++|++|++++|. +..
T Consensus 413 ~~~--~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~l~~L~~L~l~~n~-l~~ 484 (570)
T 2z63_A 413 EFS--VFLSLRNLIYLDISHTHTRVAF---NGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQ-LEQ 484 (570)
T ss_dssp TSC--TTTTCTTCCEEECTTSCCEECC---TTTTTTCTTCCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTSC-CCE
T ss_pred chh--hhhcCCCCCEEeCcCCcccccc---hhhhhcCCcCcEEECcCCcCccccch--hhhhcccCCCEEECCCCc-ccc
Confidence 111 3456899999999998533222 223456899999999998532 2344 345789999999999985 444
Q ss_pred hhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCC
Q 047733 422 IFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECP 479 (508)
Q Consensus 422 i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~ 479 (508)
+. +..+..+++|++|++++| ++++++...+. .+++|+.|+++++|
T Consensus 485 ~~-----------~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 485 LS-----------PTAFNSLSSLQVLNMASN-QLKSVPDGIFD-RLTSLQKIWLHTNP 529 (570)
T ss_dssp EC-----------TTTTTTCTTCCEEECCSS-CCSCCCTTTTT-TCTTCCEEECCSSC
T ss_pred CC-----------hhhhhcccCCCEEeCCCC-cCCCCCHHHhh-cccCCcEEEecCCc
Confidence 32 334556899999999998 78887654433 67999999999754
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=8.1e-27 Score=251.71 Aligned_cols=353 Identities=17% Similarity=0.145 Sum_probs=184.8
Q ss_pred cCCCcccEEEeecCCCC-CCCC---CCCCCCCcEEEcCCCCCC-CCCcc------------cCCCCCCCCChhh---hhC
Q 047733 36 DALKVCTAISLKNSNIS-ELPQ---VFECPQLKYFHIANDPSR-RIPVH------------IANDPSRRIPDKF---FTG 95 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~-~l~~---~~~~~~L~~L~l~~~~~~-~~~~~------------~~~~~~~~~~~~~---~~~ 95 (508)
..++++++|++++|.+. .++. +..+++|++|++++|... ..|.. +..+.....+... +.+
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 97 KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp CCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred ccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 34678999999998884 3444 348889999999886432 11211 1111222222211 356
Q ss_pred CCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCch-hhHHHhccCCCCceEecc
Q 047733 96 MRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLLDLS 173 (508)
Q Consensus 96 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~ 173 (508)
+++|++|++++|.+..... +..+++|++|++++|.++. +..++++++|++|++++|.+. .+|..+..+++|++|+++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp CTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence 6667777777766653222 2567777777777777665 444777777777777777666 566677777777777777
Q ss_pred CCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccC-CCCccEEEEecccC-ccCCCCCccCCCc
Q 047733 174 NCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN-LSKLTSLEILIEDE-KTLPRDLSFFKML 251 (508)
Q Consensus 174 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~-~~~~~~l~~~~~L 251 (508)
+|.....+|. ..+++|++|++++|.+++.. +..+.. +++|+.|+++++.. +..|..+..+++|
T Consensus 256 ~n~l~~~~~~---~~l~~L~~L~L~~n~l~~~i------------p~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 320 (768)
T 3rgz_A 256 SNQFVGPIPP---LPLKSLQYLSLAENKFTGEI------------PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320 (768)
T ss_dssp SSCCEESCCC---CCCTTCCEEECCSSEEEESC------------CCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTC
T ss_pred CCcccCccCc---cccCCCCEEECcCCccCCcc------------CHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCc
Confidence 7763333333 26677777777776654322 233333 36677777776663 3555566667777
Q ss_pred cEEEEEecCcc-cCCCC-CCCccceeeEEeccCccccccchhhhccc-ceeEEEecCCCCccccccCCcCCCCCCCcEEE
Q 047733 252 QRYSILIGDQW-AWDSP-SDDISGIFQLTVASGANICLNGGHIMQLK-GIKELCLGGSLDMKSVLYGSHGEGFPQLKHLE 328 (508)
Q Consensus 252 ~~L~i~~~~~~-~~~~~-~~~~~~l~~l~L~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 328 (508)
+.|.+..+... ..... +..+++|+.+.+..+............++ +|+.|++.++.-............+++|++|+
T Consensus 321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence 77766644322 11111 33444555555554433211111122233 66666665543222222211112255666666
Q ss_pred EecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCC
Q 047733 329 VVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQL 408 (508)
Q Consensus 329 l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L 408 (508)
+.+|. ++.... . ....+++|+.|+++++.--... +.....+++|++|++++|.--..+| .....+++|
T Consensus 401 L~~n~-l~~~~p--~----~l~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L 468 (768)
T 3rgz_A 401 LQNNG-FTGKIP--P----TLSNCSELVSLHLSFNYLSGTI---PSSLGSLSKLRDLKLWLNMLEGEIP--QELMYVKTL 468 (768)
T ss_dssp CCSSE-EEEECC--G----GGGGCTTCCEEECCSSEEESCC---CGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTC
T ss_pred CCCCc-cccccC--H----HHhcCCCCCEEECcCCcccCcc---cHHHhcCCCCCEEECCCCcccCcCC--HHHcCCCCc
Confidence 66642 221100 0 1234556666666654311111 1122345555555555553221222 123445555
Q ss_pred cEEeeccc
Q 047733 409 QFIEVTEC 416 (508)
Q Consensus 409 ~~L~i~~c 416 (508)
++|+++++
T Consensus 469 ~~L~L~~N 476 (768)
T 3rgz_A 469 ETLILDFN 476 (768)
T ss_dssp CEEECCSS
T ss_pred eEEEecCC
Confidence 55555554
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=3.7e-26 Score=232.65 Aligned_cols=343 Identities=18% Similarity=0.247 Sum_probs=252.3
Q ss_pred CCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhc
Q 047733 38 LKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR 117 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~ 117 (508)
++++++|++.++.+..++.+..+++|++|++++| ....++. +.++++|++|++++|.+..++. +.
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n------------~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~ 109 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN------------QLTDITP--LKNLTKLVDILMNNNQIADITP-LA 109 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSS------------CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GT
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCC------------ccCCchh--hhccccCCEEECCCCccccChh-hc
Confidence 5789999999999998988779999999999993 3334444 5899999999999999998877 89
Q ss_pred cCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733 118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197 (508)
Q Consensus 118 ~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 197 (508)
++++|++|++++|.+++...+.++++|++|++++|.+..++ .+..+++|++|++.. . ...++. +..+++|++|++
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~~--~~~l~~L~~L~l 184 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLKP--LANLTTLERLDI 184 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCGG--GTTCTTCCEEEC
T ss_pred CCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-c-ccCchh--hccCCCCCEEEC
Confidence 99999999999999888444899999999999999888776 488999999999974 3 444544 789999999999
Q ss_pred ecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeE
Q 047733 198 GESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQL 277 (508)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l 277 (508)
++|.+. .+..+..+++|+.|+++++.....+. +..+++|+.|.+..+....
T Consensus 185 ~~n~l~--------------~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-------------- 235 (466)
T 1o6v_A 185 SSNKVS--------------DISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-------------- 235 (466)
T ss_dssp CSSCCC--------------CCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC--------------
T ss_pred cCCcCC--------------CChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc--------------
Confidence 998865 22457888999999999988655544 5678889988886543111
Q ss_pred EeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcce
Q 047733 278 TVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLES 357 (508)
Q Consensus 278 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~ 357 (508)
.+....+++|+.|++.++. ++.... ...+++|++|+++++ .++.+. ....+++|+.
T Consensus 236 -----------~~~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~--------~~~~l~~L~~ 291 (466)
T 1o6v_A 236 -----------IGTLASLTNLTDLDLANNQ-ISNLAP---LSGLTKLTELKLGAN-QISNIS--------PLAGLTALTN 291 (466)
T ss_dssp -----------CGGGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSS-CCCCCG--------GGTTCTTCSE
T ss_pred -----------chhhhcCCCCCEEECCCCc-cccchh---hhcCCCCCEEECCCC-ccCccc--------cccCCCccCe
Confidence 0122356788888887763 333322 356788888888875 343321 2345778888
Q ss_pred eeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCc
Q 047733 358 LFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQ 437 (508)
Q Consensus 358 L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~ 437 (508)
|++.++. ++.+. +...+++|++|++++| .+..+++ ...+++|+.|++++|+ +..+. .
T Consensus 292 L~L~~n~-l~~~~----~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~-------------~ 348 (466)
T 1o6v_A 292 LELNENQ-LEDIS----PISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNK-VSDVS-------------S 348 (466)
T ss_dssp EECCSSC-CSCCG----GGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSC-CCCCG-------------G
T ss_pred EEcCCCc-ccCch----hhcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCc-cCCch-------------h
Confidence 8888764 44332 2467788888888887 5665544 3678888888888774 43331 2
Q ss_pred eeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCCC
Q 047733 438 VIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECPQ 480 (508)
Q Consensus 438 ~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~~ 480 (508)
+..+++|+.|++++| +++++.. ...+++|+.|++++|+-
T Consensus 349 l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 349 LANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQAW 387 (466)
T ss_dssp GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEEE
T ss_pred hccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCcc
Confidence 345788888888887 4555543 23568888888887753
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.9e-26 Score=239.94 Aligned_cols=153 Identities=17% Similarity=0.232 Sum_probs=98.0
Q ss_pred cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
...+++++|++++|.+.++++ +..+++|++|++++|.+.. ++...|.++++|++|++++|.++.++
T Consensus 23 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------------~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT------------IEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE------------ECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc------------cChhhccccccCCEEECCCCccCccC
Confidence 455789999999999977643 3489999999999954433 33333466677777777777766555
Q ss_pred h-hhccCccccEEeccCCCCCC---ccccCCCCCCcEEEccCCC-chhhH-HHhccCCCCceEeccCCCCCCccChhhhh
Q 047733 114 S-SLRLFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSD-MEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVIS 187 (508)
Q Consensus 114 ~-~~~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~-i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 187 (508)
. .++++++|++|++++|.++. +..++++++|++|++++|. +..+| ..+..+++|++|++++|......+.. ++
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~ 169 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LK 169 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hh
Confidence 3 36667777777777776553 3556667777777776665 44554 34566667777777666522223333 45
Q ss_pred cCCCCcEEEeecCC
Q 047733 188 SLSQLEELYIGESP 201 (508)
Q Consensus 188 ~l~~L~~L~l~~~~ 201 (508)
.+++|++|+++.+.
T Consensus 170 ~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 170 SIRDIHHLTLHLSE 183 (549)
T ss_dssp TCSEEEEEEEECSB
T ss_pred ccccCceEecccCc
Confidence 55555555555544
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=7.7e-27 Score=251.88 Aligned_cols=405 Identities=17% Similarity=0.148 Sum_probs=215.0
Q ss_pred CCCcccEEEeecCCCCC-CCC-CCCCCCCcEEEcCCCCCCC-CCcc---------cCCCCC-CCCChhhhhCCCCccEEE
Q 047733 37 ALKVCTAISLKNSNISE-LPQ-VFECPQLKYFHIANDPSRR-IPVH---------IANDPS-RRIPDKFFTGMRELRVLD 103 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~-l~~-~~~~~~L~~L~l~~~~~~~-~~~~---------~~~~~~-~~~~~~~~~~l~~L~~L~ 103 (508)
.++++++|++++|.+.+ ++. +..+++|++|++.+|.... +|.. +..+.. +.+|..++..+++|++|+
T Consensus 221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300 (768)
T ss_dssp TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence 46789999999999864 343 3488999999999864321 1210 000111 123333322234455555
Q ss_pred ecCCcCC-CCchhhccCccccEEeccCCCCCC--cc-ccCCCCCCcEEEccCCCch-hhHHHhccCC-CCceEeccCCCC
Q 047733 104 FARMHLL-PLPSSLRLFQNLQTLSLDYCELGD--IA-IVGDLKTLVILTLRGSDME-KLVEEIGQLT-HLRLLDLSNCFN 177 (508)
Q Consensus 104 l~~~~~~-~l~~~~~~l~~L~~L~l~~~~l~~--~~-~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~-~L~~L~l~~~~~ 177 (508)
+++|.+. .+|..++++++|++|++++|.++. |. .++++++|++|++++|.+. .+|..+..+. +|++|++++|..
T Consensus 301 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l 380 (768)
T 3rgz_A 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380 (768)
T ss_dssp CCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEE
T ss_pred CcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCc
Confidence 5555443 344444455555555555544432 22 2444555555555554443 3444444443 444444444432
Q ss_pred CCccChhhhhc--CCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccC-ccCCCCCccCCCccEE
Q 047733 178 LKVIPPNVISS--LSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDE-KTLPRDLSFFKMLQRY 254 (508)
Q Consensus 178 ~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L 254 (508)
...++.. +.. +++|++|++++|.++. ..+..++.+++|+.|++++|.. +..|..+..+++|+.|
T Consensus 381 ~~~~~~~-~~~~~~~~L~~L~L~~n~l~~------------~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 381 SGPILPN-LCQNPKNTLQELYLQNNGFTG------------KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp EEECCTT-TTCSTTCCCCEEECCSSEEEE------------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCcChh-hhhcccCCccEEECCCCcccc------------ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence 2222222 222 3444444444444331 2335567777777777777763 3556666777777777
Q ss_pred EEEecCcc-cCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCC
Q 047733 255 SILIGDQW-AWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENS 333 (508)
Q Consensus 255 ~i~~~~~~-~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 333 (508)
.+..+... ........+++|+.+.+..+............+++|+.|++.++.-...++.. ...+++|++|++++|.
T Consensus 448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW--IGRLENLAILKLSNNS 525 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSC
T ss_pred ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH--HhcCCCCCEEECCCCc
Confidence 77655432 12223334555666666655433333333456777777777766432222221 2457777777777754
Q ss_pred CceeeeecccCCCCCCCcCcCcceeeccCcccccccccC-----------------------------------------
Q 047733 334 NLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRG----------------------------------------- 372 (508)
Q Consensus 334 ~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~----------------------------------------- 372 (508)
-...++. ....+++|+.|++++++-...++..
T Consensus 526 l~~~~p~-------~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (768)
T 3rgz_A 526 FSGNIPA-------ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598 (768)
T ss_dssp CEEECCG-------GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred ccCcCCH-------HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence 2222221 2335677777777765422121100
Q ss_pred --------------------------cccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccc
Q 047733 373 --------------------------PLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAE 426 (508)
Q Consensus 373 --------------------------~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~ 426 (508)
+.....+++|+.|+++++ .+....+ ..+..+++|+.|+++++.--..+
T Consensus 599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~i---- 672 (768)
T 3rgz_A 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIP-KEIGSMPYLFILNLGHNDISGSI---- 672 (768)
T ss_dssp CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCC-GGGGGCTTCCEEECCSSCCCSCC----
T ss_pred ccchhhhccccccccccccceecccCchhhhccccccEEECcCC-cccccCC-HHHhccccCCEEeCcCCccCCCC----
Confidence 001223467778888876 4443222 23567888888888876432222
Q ss_pred cCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCC
Q 047733 427 RGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECP 479 (508)
Q Consensus 427 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~ 479 (508)
+..+..+++|+.|+++++ +++......+. .+++|+.|++++++
T Consensus 673 --------p~~l~~L~~L~~LdLs~N-~l~g~ip~~l~-~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 673 --------PDEVGDLRGLNILDLSSN-KLDGRIPQAMS-ALTMLTEIDLSNNN 715 (768)
T ss_dssp --------CGGGGGCTTCCEEECCSS-CCEECCCGGGG-GCCCCSEEECCSSE
T ss_pred --------ChHHhCCCCCCEEECCCC-cccCcCChHHh-CCCCCCEEECcCCc
Confidence 445666788888888887 45533222222 45788888888774
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=3.3e-25 Score=236.63 Aligned_cols=140 Identities=21% Similarity=0.273 Sum_probs=105.0
Q ss_pred CCCcccEEEeecCCCCCCCCC--CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-
Q 047733 37 ALKVCTAISLKNSNISELPQV--FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP- 113 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~- 113 (508)
..+++++|++++|.+.++++. ..+++|++|++++| ....+|...|.++++|++|++++|.++.++
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n------------~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 114 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN------------ELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS------------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCS
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC------------ccCccChhhhccCCCCCEEECCCCccCccCh
Confidence 357899999999999777543 28999999999984 344555554578889999999999888766
Q ss_pred hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHH-Hh--ccCCCCceEeccCCCCCCccChhhhhc
Q 047733 114 SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVE-EI--GQLTHLRLLDLSNCFNLKVIPPNVISS 188 (508)
Q Consensus 114 ~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~~--~~l~~L~~L~l~~~~~~~~~~~~~l~~ 188 (508)
..++++++|++|++++|.++. +..++++++|++|++++|.++.++. .+ ..+++|++|++++|. +..+++..+..
T Consensus 115 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~ 193 (680)
T 1ziw_A 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHA 193 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGG
T ss_pred hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-ccccChhhhhh
Confidence 568888899999999888776 4678888899999998888775543 33 356788888888876 44444332343
Q ss_pred C
Q 047733 189 L 189 (508)
Q Consensus 189 l 189 (508)
+
T Consensus 194 l 194 (680)
T 1ziw_A 194 I 194 (680)
T ss_dssp S
T ss_pred h
Confidence 3
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=3.8e-26 Score=245.59 Aligned_cols=387 Identities=14% Similarity=0.154 Sum_probs=270.6
Q ss_pred CCCCC-CCCCCcEEEcCCCCCCC--CCcccC----CCCCCCCChhh-hhCCCCccEEEecCCcCC-CCchhhccCccccE
Q 047733 54 LPQVF-ECPQLKYFHIANDPSRR--IPVHIA----NDPSRRIPDKF-FTGMRELRVLDFARMHLL-PLPSSLRLFQNLQT 124 (508)
Q Consensus 54 l~~~~-~~~~L~~L~l~~~~~~~--~~~~~~----~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~ 124 (508)
+|... .+++|++|++++|.+.. ++.... +.....+|..+ |.++++|++|++++|.+. .+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 44433 88999999999965433 111000 00000266665 348999999999999875 78999999999999
Q ss_pred EeccCCC-CCC---ccccCCC-------CCCcEEEccCCCchhhHH--HhccCCCCceEeccCCCCCCccChhhhhcCCC
Q 047733 125 LSLDYCE-LGD---IAIVGDL-------KTLVILTLRGSDMEKLVE--EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQ 191 (508)
Q Consensus 125 L~l~~~~-l~~---~~~i~~l-------~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 191 (508)
|++++|+ ++. |..++++ ++|++|++++|.+..+|. .+.++++|++|++++|. +..+| . ++.+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-hcCCCc
Confidence 9999998 874 4555544 499999999999999998 89999999999999988 66888 3 899999
Q ss_pred CcEEEeecCCCccccccCcCCCCcccchhhccCCCC-ccEEEEecccCccCCCCCccCC--CccEEEEEecCcccCCC--
Q 047733 192 LEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSK-LTSLEILIEDEKTLPRDLSFFK--MLQRYSILIGDQWAWDS-- 266 (508)
Q Consensus 192 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~l~~~~--~L~~L~i~~~~~~~~~~-- 266 (508)
|+.|++++|.+. .++..+..+++ |+.|++++|....+|..+.... +|+.|.++.+......+
T Consensus 597 L~~L~Ls~N~l~-------------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 597 LTDLKLDYNQIE-------------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp ESEEECCSSCCS-------------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred ceEEECcCCccc-------------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccc
Confidence 999999999876 24466888888 9999999999888888775554 49999998665422111
Q ss_pred --CCC--CccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcC------CCCCCCcEEEEecCCCce
Q 047733 267 --PSD--DISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHG------EGFPQLKHLEVVENSNLL 336 (508)
Q Consensus 267 --~~~--~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~l~ 336 (508)
... ...+|+.+.+..+.....+......+++|+.|++.++ .++.++..... .++++|++|++++| .++
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~ 741 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLT 741 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCC
T ss_pred hhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCc
Confidence 111 2236877888776655555555567899999999886 44444332211 12349999999996 566
Q ss_pred eeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCC-----CcceecchhhhhccCCCcEE
Q 047733 337 CVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCD-----KLKNVFPLVIGRGLQQLQFI 411 (508)
Q Consensus 337 ~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~-----~l~~l~~~~~~~~l~~L~~L 411 (508)
.++... ....+++|+.|+++++. ++.+ +.....+++|+.|++++++ .+....+ ..+..+++|+.|
T Consensus 742 ~lp~~l-----~~~~l~~L~~L~Ls~N~-L~~l---p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~~L~~L~~L 811 (876)
T 4ecn_A 742 SLSDDF-----RATTLPYLSNMDVSYNC-FSSF---PTQPLNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQL 811 (876)
T ss_dssp CCCGGG-----STTTCTTCCEEECCSSC-CSSC---CCGGGGCTTCCEEECCCCBCTTCCBCCCCCC-TTGGGCSSCCEE
T ss_pred cchHHh-----hhccCCCcCEEEeCCCC-CCcc---chhhhcCCCCCEEECCCCCCcccccccccCh-HHHhcCCCCCEE
Confidence 543211 11368999999999964 5544 3345688999999998743 3332223 345789999999
Q ss_pred eeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccc-c------ccCCccEEEEeeCCCcccc
Q 047733 412 EVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLH-F------EFPSLEKLRILECPQVKFK 484 (508)
Q Consensus 412 ~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~-~------~~p~L~~L~i~~C~~l~~~ 484 (508)
++++|.- ..+. .. .+++|+.|++++|+ +..+...... . ....-...+|.+||.+.+.
T Consensus 812 ~Ls~N~L-~~Ip------------~~--l~~~L~~LdLs~N~-l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~L~l~ 875 (876)
T 4ecn_A 812 QIGSNDI-RKVD------------EK--LTPQLYILDIADNP-NISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875 (876)
T ss_dssp ECCSSCC-CBCC------------SC--CCSSSCEEECCSCT-TCEEECGGGHHHHHTTCCEEECCTTSEEESCGGGCCC
T ss_pred ECCCCCC-CccC------------Hh--hcCCCCEEECCCCC-CCccChHHccccccchheeecCCCccccCCCCCcccC
Confidence 9999864 5553 22 24799999999995 4444332211 0 1112233467899987543
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.5e-26 Score=244.17 Aligned_cols=385 Identities=11% Similarity=0.111 Sum_probs=271.1
Q ss_pred CCCCC-CCCCCcEEEcCCCCCCCC--Ccc-cCC---CCCCCCChhhhh--CCCCccEEEecCCcCC-CCchhhccCcccc
Q 047733 54 LPQVF-ECPQLKYFHIANDPSRRI--PVH-IAN---DPSRRIPDKFFT--GMRELRVLDFARMHLL-PLPSSLRLFQNLQ 123 (508)
Q Consensus 54 l~~~~-~~~~L~~L~l~~~~~~~~--~~~-~~~---~~~~~~~~~~~~--~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~ 123 (508)
+|... .+++|++|++++|..... +.. .+. .....+|..+ + ++++|++|++++|.+. .+|..++++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 44433 899999999999543320 000 000 0000166665 5 8999999999999876 6899999999999
Q ss_pred EEeccCCC-CCC---ccccCCC------CCCcEEEccCCCchhhHH--HhccCCCCceEeccCCCCCCccChhhhhcCCC
Q 047733 124 TLSLDYCE-LGD---IAIVGDL------KTLVILTLRGSDMEKLVE--EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQ 191 (508)
Q Consensus 124 ~L~l~~~~-l~~---~~~i~~l------~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 191 (508)
+|++++|+ ++. |..++++ ++|++|++++|.++.+|. .+.++++|++|++++|...+.+| . ++.+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCC
Confidence 99999998 874 5677766 999999999999999998 89999999999999988333888 4 789999
Q ss_pred CcEEEeecCCCccccccCcCCCCcccchhhccCCCC-ccEEEEecccCccCCCCCccC--CCccEEEEEecCcccC-CCC
Q 047733 192 LEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSK-LTSLEILIEDEKTLPRDLSFF--KMLQRYSILIGDQWAW-DSP 267 (508)
Q Consensus 192 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~l~~~--~~L~~L~i~~~~~~~~-~~~ 267 (508)
|++|++++|.+. .++..+..+++ |+.|+++++....+|..+... ++|+.|.+..+..... ...
T Consensus 355 L~~L~L~~N~l~-------------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 355 LASLNLAYNQIT-------------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp ESEEECCSSEEE-------------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred CCEEECCCCccc-------------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 999999998876 24466888888 999999999987888877554 4899999886553321 112
Q ss_pred CC-------CccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcC------CCCCCCcEEEEecCCC
Q 047733 268 SD-------DISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHG------EGFPQLKHLEVVENSN 334 (508)
Q Consensus 268 ~~-------~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~ 334 (508)
+. ...+++.+.+..+.....+......+++|++|++.++. ++.+...... ..+++|++|+++++ .
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~ 499 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-K 499 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-C
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-c
Confidence 22 34568778887765555555556668999999998874 4444332211 12239999999985 5
Q ss_pred ceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCC-----C-cceecchhhhhccCCC
Q 047733 335 LLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCD-----K-LKNVFPLVIGRGLQQL 408 (508)
Q Consensus 335 l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~-----~-l~~l~~~~~~~~l~~L 408 (508)
++.++... ....+++|+.|+++++. ++.++ .....+++|++|+++++. . ...+| ..+..+++|
T Consensus 500 l~~lp~~~-----~~~~l~~L~~L~Ls~N~-l~~ip---~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p--~~l~~l~~L 568 (636)
T 4eco_A 500 LTKLSDDF-----RATTLPYLVGIDLSYNS-FSKFP---TQPLNSSTLKGFGIRNQRDAQGNRTLREWP--EGITLCPSL 568 (636)
T ss_dssp CCBCCGGG-----STTTCTTCCEEECCSSC-CSSCC---CGGGGCSSCCEEECCSCBCTTCCBCCCCCC--TTGGGCSSC
T ss_pred CCccChhh-----hhccCCCcCEEECCCCC-CCCcC---hhhhcCCCCCEEECCCCcccccCcccccCh--HHHhcCCCC
Confidence 65543211 11368999999999964 54443 344678999999997543 2 23333 245779999
Q ss_pred cEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCcc-c------cccCCccEEEEeeCCCc
Q 047733 409 QFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDL-H------FEFPSLEKLRILECPQV 481 (508)
Q Consensus 409 ~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~-~------~~~p~L~~L~i~~C~~l 481 (508)
++|+++++.- ..+. .. .+++|++|++++++ ++.+..... . ......+..+|++||.+
T Consensus 569 ~~L~Ls~N~l-~~ip------------~~--~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L 632 (636)
T 4eco_A 569 TQLQIGSNDI-RKVN------------EK--ITPNISVLDIKDNP-NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632 (636)
T ss_dssp CEEECCSSCC-CBCC------------SC--CCTTCCEEECCSCT-TCEEECTTTHHHHHTTCCEEECCTTSEEESCGGG
T ss_pred CEEECCCCcC-CccC------------Hh--HhCcCCEEECcCCC-CccccHHhcchhhhcccceeecCCccccCCCccc
Confidence 9999999764 5543 22 23899999999985 444432221 1 12234456688999986
Q ss_pred cc
Q 047733 482 KF 483 (508)
Q Consensus 482 ~~ 483 (508)
.+
T Consensus 633 ~~ 634 (636)
T 4eco_A 633 DI 634 (636)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.7e-25 Score=231.18 Aligned_cols=122 Identities=21% Similarity=0.292 Sum_probs=58.0
Q ss_pred CcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733 39 KVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL 116 (508)
Q Consensus 39 ~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 116 (508)
+++++|++++|.+.++++ +..+++|++|++++| .+..++...|.++++|++|++++|.++.+|..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHN------------RIQYLDISVFKFNQELEYLDLSHNKLVKISCH- 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS------------CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCC------------ccCCcChHHhhcccCCCEEecCCCceeecCcc-
Confidence 455555555555544432 224555555555552 12222222234555555555555555544443
Q ss_pred ccCccccEEeccCCCCCC---ccccCCCCCCcEEEccCCCchhhHHHhccCCCC--ceEeccCCC
Q 047733 117 RLFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHL--RLLDLSNCF 176 (508)
Q Consensus 117 ~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L--~~L~l~~~~ 176 (508)
.+++|++|++++|.++. |..++++++|++|++++|.+.. ..+..+++| ++|++++|.
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECT
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccc
Confidence 45555555555555443 2445555555555555554443 123344444 555555544
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=3.4e-25 Score=241.50 Aligned_cols=286 Identities=17% Similarity=0.222 Sum_probs=178.6
Q ss_pred CCCCCcCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCc
Q 047733 31 SWPDKDALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMH 108 (508)
Q Consensus 31 ~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 108 (508)
..|. .++++++|++++|.+..+.+ +..+++|++|++++ +.....++...|.++++|++|++++|.
T Consensus 18 ~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~-----------n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 18 QVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGS-----------QYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp CCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECT-----------TCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred CCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCC-----------CCCccccCHHHhcCCCCCCEEECCCCc
Confidence 4444 77899999999999977643 34999999999999 334555644556888999999999998
Q ss_pred CCCC-chhhccCccccEEeccCCCCCC--ccc--cCCCCCCcEEEccCCCchhh--HHHhccCCCCceEeccCCCCCCcc
Q 047733 109 LLPL-PSSLRLFQNLQTLSLDYCELGD--IAI--VGDLKTLVILTLRGSDMEKL--VEEIGQLTHLRLLDLSNCFNLKVI 181 (508)
Q Consensus 109 ~~~l-~~~~~~l~~L~~L~l~~~~l~~--~~~--i~~l~~L~~L~l~~~~i~~l--p~~~~~l~~L~~L~l~~~~~~~~~ 181 (508)
+..+ |..|+++++|++|++++|.+++ +.. ++++++|++|++++|.+..+ +..+.++++|++|++++|. +..+
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~ 163 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLV 163 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCee
Confidence 8764 7788889999999999988775 443 88889999999999888754 2467888999999998876 3333
Q ss_pred ChhhhhcC--CCCcEEEeecCCCcccc------------------------------ccCcC-C---CC-----------
Q 047733 182 PPNVISSL--SQLEELYIGESPIMWGK------------------------------VGGVD-G---EG----------- 214 (508)
Q Consensus 182 ~~~~l~~l--~~L~~L~l~~~~~~~~~------------------------------~~~~~-~---~~----------- 214 (508)
.+..+..+ ++|+.|+++.|.+.... +.... . ..
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 22223433 45555555444332211 00000 0 00
Q ss_pred ---------cccchhhccC--CCCccEEEEecccCccC-CCCCccCCCccEEEEEecCcccC-CCCCCCccceeeEEecc
Q 047733 215 ---------RNASLDELNN--LSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSILIGDQWAW-DSPSDDISGIFQLTVAS 281 (508)
Q Consensus 215 ---------~~~~~~~l~~--l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~~~~~-~~~~~~~~~l~~l~L~~ 281 (508)
.......+.. .++|+.|+++++..... +..+..+++|+.|.+..+..... ...+..+++|+.+.+..
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 0000001111 25677788777764433 34456777777777775543322 23345556676666665
Q ss_pred CccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecC
Q 047733 282 GANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVEN 332 (508)
Q Consensus 282 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 332 (508)
+............+++|+.|++.++ .+..+... ....+++|++|+++++
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETC
T ss_pred CCCCccCHHHhcCCCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCC
Confidence 5433333333445677777777665 33333221 1245677777777764
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.7e-25 Score=232.75 Aligned_cols=192 Identities=16% Similarity=0.206 Sum_probs=151.7
Q ss_pred EEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccc
Q 047733 44 ISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNL 122 (508)
Q Consensus 44 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L 122 (508)
.+.+++.+..+|... .++|++|++++|. +..++...|.++++|++|++++|.++.++ ..|+++++|
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~------------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 76 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNK------------ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSSC------------CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred EECCCCccccccccC-CCCccEEECcCCc------------cCccChhhhhcCCcccEEECCCCCcCccChhhccccccC
Confidence 677778888888744 4899999999943 33333333589999999999999998765 679999999
Q ss_pred cEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchh--hHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEee
Q 047733 123 QTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEK--LVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG 198 (508)
Q Consensus 123 ~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 198 (508)
++|++++|.++. + ..++++++|++|++++|.++. .|..+.++++|++|++++|..++.++...+..+++|++|+++
T Consensus 77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 999999999888 5 569999999999999998884 456788999999999999886778876448899999999999
Q ss_pred cCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCC-ccCCCccEEEEEecC
Q 047733 199 ESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDL-SFFKMLQRYSILIGD 260 (508)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~i~~~~ 260 (508)
+|.+... .+..++.+++|+.|+++++.....+..+ ..+++|+.|.+..+.
T Consensus 157 ~n~l~~~------------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 157 ALSLRNY------------QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp ETTCCEE------------CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred CCccccc------------ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence 9987643 2355677777888888777655544443 346777777777544
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=9.4e-25 Score=213.58 Aligned_cols=301 Identities=17% Similarity=0.270 Sum_probs=162.4
Q ss_pred CCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhc
Q 047733 38 LKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR 117 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~ 117 (508)
++++++|++.++.+..++.+..+++|++|++.+| .+..++. +..+++|++|++++|.++.++ .+.
T Consensus 43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n------------~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~ 107 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN------------QITDISP--LSNLVKLTNLYIGTNKITDIS-ALQ 107 (347)
T ss_dssp HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSS------------CCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGT
T ss_pred cccccEEEEeCCccccchhhhhcCCccEEEccCC------------ccccchh--hhcCCcCCEEEccCCcccCch-HHc
Confidence 4566667776666666665556666666666662 2222332 356666666666666665554 356
Q ss_pred cCccccEEeccCCCCCCccccCCCCCCcEEEccCCC-chhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733 118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSD-MEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196 (508)
Q Consensus 118 ~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 196 (508)
.+++|++|++++|.+++...+..+++|++|++++|. +..++ .+..+++|++|++++|. +..++. +..+++|++|+
T Consensus 108 ~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~ 183 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLS 183 (347)
T ss_dssp TCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEE
T ss_pred CCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEE
Confidence 666666666666666553235666666666666662 22222 35566666666666654 444443 45666666666
Q ss_pred eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceee
Q 047733 197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQ 276 (508)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~ 276 (508)
+++|.+.. +..+..+++|+.++++++.....+. +.
T Consensus 184 l~~n~l~~--------------~~~~~~l~~L~~L~l~~n~l~~~~~-~~------------------------------ 218 (347)
T 4fmz_A 184 LNYNQIED--------------ISPLASLTSLHYFTAYVNQITDITP-VA------------------------------ 218 (347)
T ss_dssp CTTSCCCC--------------CGGGGGCTTCCEEECCSSCCCCCGG-GG------------------------------
T ss_pred ccCCcccc--------------cccccCCCccceeecccCCCCCCch-hh------------------------------
Confidence 66655431 1124455555555555554332222 22
Q ss_pred EEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcc
Q 047733 277 LTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLE 356 (508)
Q Consensus 277 l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~ 356 (508)
.+++|++|++.++. ++.... ...+++|++|+++++ .++.+. ....+++|+
T Consensus 219 -----------------~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~~--------~~~~l~~L~ 268 (347)
T 4fmz_A 219 -----------------NMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTN-QISDIN--------AVKDLTKLK 268 (347)
T ss_dssp -----------------GCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCCCG--------GGTTCTTCC
T ss_pred -----------------cCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECCCC-ccCCCh--------hHhcCCCcC
Confidence 34555555555542 222221 245666666666664 333221 233456666
Q ss_pred eeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCC
Q 047733 357 SLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNT 436 (508)
Q Consensus 357 ~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~ 436 (508)
.|+++++ .++.+. ....+++|++|++++| .+...++ .....+++|++|++++|+ +..+.
T Consensus 269 ~L~l~~n-~l~~~~----~~~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~------------- 327 (347)
T 4fmz_A 269 MLNVGSN-QISDIS----VLNNLSQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIR------------- 327 (347)
T ss_dssp EEECCSS-CCCCCG----GGGGCTTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCG-------------
T ss_pred EEEccCC-ccCCCh----hhcCCCCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc-ccccc-------------
Confidence 6666665 233331 2345677777777776 3444333 334567777777777765 33332
Q ss_pred ceeeccccCeeEcCCCc
Q 047733 437 QVIELTQLTILELCYLP 453 (508)
Q Consensus 437 ~~~~~~~L~~L~l~~c~ 453 (508)
.+..+++|++|++++|+
T Consensus 328 ~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 328 PLASLSKMDSADFANQV 344 (347)
T ss_dssp GGGGCTTCSEESSSCC-
T ss_pred Chhhhhccceeehhhhc
Confidence 13456777777777763
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=5.7e-24 Score=219.73 Aligned_cols=386 Identities=15% Similarity=0.148 Sum_probs=223.6
Q ss_pred cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhccCc
Q 047733 42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLFQ 120 (508)
Q Consensus 42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~ 120 (508)
++++++++.+..+|.... ++|++|++++ +.+..++...|.++++|++|++++|.++.+ |..|++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~------------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 69 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQ------------NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ 69 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCS------------SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT
T ss_pred ceEecCCCCccccccccc-ccccEEECCC------------CcccccChhhccccccccEEecCCCccCCcChHHhhccc
Confidence 689999999999987554 8999999999 344555655569999999999999999876 67899999
Q ss_pred cccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchh--hHHHhccCCCCceEeccCCCCCCccChhhhhcCCCC--cEE
Q 047733 121 NLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEK--LVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQL--EEL 195 (508)
Q Consensus 121 ~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L 195 (508)
+|++|++++|+++. |.. .+++|++|++++|.++. +|..++.+++|++|++++|. +... .+..+++| ++|
T Consensus 70 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L 143 (520)
T 2z7x_B 70 ELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKV 143 (520)
T ss_dssp TCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEE
T ss_pred CCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEE
Confidence 99999999999988 544 89999999999999885 56889999999999999987 4442 26778888 999
Q ss_pred EeecCCC--ccccccCcCCCC--------------cccchhhccCCCCccEEEEeccc-------CccCCCCCccC----
Q 047733 196 YIGESPI--MWGKVGGVDGEG--------------RNASLDELNNLSKLTSLEILIED-------EKTLPRDLSFF---- 248 (508)
Q Consensus 196 ~l~~~~~--~~~~~~~~~~~~--------------~~~~~~~l~~l~~L~~L~l~~~~-------~~~~~~~l~~~---- 248 (508)
++++|.+ ....++....-. .......+..+++|+.++++++. .......+..+
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~ 223 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCC
T ss_pred EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchh
Confidence 9999987 332221100000 00000122334455555554432 00000011222
Q ss_pred -----------------------CCccEEEEEecCcc-cCCCCC-----CCccceeeEEeccCccccccchhhhcc---c
Q 047733 249 -----------------------KMLQRYSILIGDQW-AWDSPS-----DDISGIFQLTVASGANICLNGGHIMQL---K 296 (508)
Q Consensus 249 -----------------------~~L~~L~i~~~~~~-~~~~~~-----~~~~~l~~l~L~~~~~~~~~~~~~~~~---~ 296 (508)
++|+.|.+..+... ...... ..++.++.+.+..... ..+......+ .
T Consensus 224 ~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~ 302 (520)
T 2z7x_B 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNM 302 (520)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTC
T ss_pred hccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccC
Confidence 35555555544322 112222 4445555555544332 2221111111 3
Q ss_pred ceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccc
Q 047733 297 GIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAA 376 (508)
Q Consensus 297 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~ 376 (508)
+|+.|++.++.. .... ....+++|++|+++++. ++... .. ....+++|+.|.++++. ++.+...+...
T Consensus 303 ~L~~L~l~~n~l-~~~~---~~~~l~~L~~L~Ls~n~-l~~~~--~~----~~~~l~~L~~L~L~~N~-l~~l~~~~~~~ 370 (520)
T 2z7x_B 303 NIKNFTVSGTRM-VHML---CPSKISPFLHLDFSNNL-LTDTV--FE----NCGHLTELETLILQMNQ-LKELSKIAEMT 370 (520)
T ss_dssp CCSEEEEESSCC-CCCC---CCSSCCCCCEEECCSSC-CCTTT--TT----TCCCCSSCCEEECCSSC-CCBHHHHHHHH
T ss_pred ceeEEEcCCCcc-cccc---chhhCCcccEEEeECCc-cChhh--hh----hhccCCCCCEEEccCCc-cCccccchHHH
Confidence 466666666532 2211 01456777777777643 22210 00 23456777777777653 33221111123
Q ss_pred cccccCCeEEEcCCCCcce-ecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccc
Q 047733 377 ESFCQLRDMRVNGCDKLKN-VFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQL 455 (508)
Q Consensus 377 ~~~~~L~~L~l~~c~~l~~-l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L 455 (508)
..+++|++|+++++ .+.. ++. .....+++|++|++++|.--..++. .+ .++|++|++++| ++
T Consensus 371 ~~l~~L~~L~Ls~N-~l~~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~------------~l--~~~L~~L~Ls~N-~l 433 (520)
T 2z7x_B 371 TQMKSLQQLDISQN-SVSYDEKK-GDCSWTKSLLSLNMSSNILTDTIFR------------CL--PPRIKVLDLHSN-KI 433 (520)
T ss_dssp TTCTTCCEEECCSS-CCBCCGGG-CSCCCCTTCCEEECCSSCCCGGGGG------------SC--CTTCCEEECCSS-CC
T ss_pred hhCCCCCEEECCCC-cCCccccc-chhccCccCCEEECcCCCCCcchhh------------hh--cccCCEEECCCC-cc
Confidence 45677777777775 3444 432 2235566777777776642222211 00 145555555555 44
Q ss_pred cccccCccccccCCccEEEEeeC
Q 047733 456 TSFCTGDLHFEFPSLEKLRILEC 478 (508)
Q Consensus 456 ~~~~~~~~~~~~p~L~~L~i~~C 478 (508)
+.++.... .+++|+.|++++|
T Consensus 434 ~~ip~~~~--~l~~L~~L~L~~N 454 (520)
T 2z7x_B 434 KSIPKQVV--KLEALQELNVASN 454 (520)
T ss_dssp CCCCGGGG--GCTTCCEEECCSS
T ss_pred cccchhhh--cCCCCCEEECCCC
Confidence 44443222 3455555555555
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=5.1e-24 Score=216.78 Aligned_cols=326 Identities=21% Similarity=0.259 Sum_probs=231.1
Q ss_pred cCCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh
Q 047733 36 DALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS 115 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~ 115 (508)
..++++++|++++|.+.+++++..+++|++|++.+| ....++. +.++++|++|++++|.++.++.
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n------------~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~- 129 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN------------QIADITP--LANLTNLTGLTLFNNQITDIDP- 129 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS------------CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-
T ss_pred hhhcCCCEEECCCCccCCchhhhccccCCEEECCCC------------ccccChh--hcCCCCCCEEECCCCCCCCChH-
Confidence 457899999999999998888779999999999984 3333443 5899999999999999998876
Q ss_pred hccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEE
Q 047733 116 LRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL 195 (508)
Q Consensus 116 ~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 195 (508)
+.++++|++|++++|.++....++.+++|++|++++ .+..++. +.++++|++|++++|. +..++. +..+++|++|
T Consensus 130 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L 204 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLDISSNK-VSDISV--LAKLTNLESL 204 (466)
T ss_dssp GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEE
T ss_pred HcCCCCCCEEECCCCccCCChhhccCCcccEeecCC-cccCchh-hccCCCCCEEECcCCc-CCCChh--hccCCCCCEE
Confidence 899999999999999988866699999999999974 4444443 8899999999999987 666654 7899999999
Q ss_pred EeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCcccee
Q 047733 196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIF 275 (508)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~ 275 (508)
++++|.+... ..++.+++|+.|+++++....++ .+..+++|+.|.+..+......
T Consensus 205 ~l~~n~l~~~--------------~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~---------- 259 (466)
T 1o6v_A 205 IATNNQISDI--------------TPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA---------- 259 (466)
T ss_dssp ECCSSCCCCC--------------GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG----------
T ss_pred EecCCccccc--------------ccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccch----------
Confidence 9999887622 22677889999999998866553 4568889999888754421110
Q ss_pred eEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCc
Q 047733 276 QLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVL 355 (508)
Q Consensus 276 ~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L 355 (508)
....+++|++|++.++ .++.... ...+++|++|++++| .++.+. ....+++|
T Consensus 260 ---------------~~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~--------~~~~l~~L 311 (466)
T 1o6v_A 260 ---------------PLSGLTKLTELKLGAN-QISNISP---LAGLTALTNLELNEN-QLEDIS--------PISNLKNL 311 (466)
T ss_dssp ---------------GGTTCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSS-CCSCCG--------GGGGCTTC
T ss_pred ---------------hhhcCCCCCEEECCCC-ccCcccc---ccCCCccCeEEcCCC-cccCch--------hhcCCCCC
Confidence 1234567777777665 3333322 345677777777764 333221 23456777
Q ss_pred ceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCC
Q 047733 356 ESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSN 435 (508)
Q Consensus 356 ~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~ 435 (508)
+.|+++++. ++... +...+++|++|++++| .+..++ ....+++|+.|++++|+ +..+.
T Consensus 312 ~~L~L~~n~-l~~~~----~~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~------------ 369 (466)
T 1o6v_A 312 TYLTLYFNN-ISDIS----PVSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQ-ISDLT------------ 369 (466)
T ss_dssp SEEECCSSC-CSCCG----GGGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCBCG------------
T ss_pred CEEECcCCc-CCCch----hhccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCc-cCccc------------
Confidence 777777763 33321 2356677777777776 455542 24567777777777764 33322
Q ss_pred CceeeccccCeeEcCCCcccccc
Q 047733 436 TQVIELTQLTILELCYLPQLTSF 458 (508)
Q Consensus 436 ~~~~~~~~L~~L~l~~c~~L~~~ 458 (508)
.+..+++|+.|++++| .++.+
T Consensus 370 -~~~~l~~L~~L~l~~n-~~~~~ 390 (466)
T 1o6v_A 370 -PLANLTRITQLGLNDQ-AWTNA 390 (466)
T ss_dssp -GGTTCTTCCEEECCCE-EEECC
T ss_pred -hhhcCCCCCEEeccCC-cccCC
Confidence 1344677777777776 34443
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=7.4e-24 Score=220.87 Aligned_cols=143 Identities=20% Similarity=0.299 Sum_probs=110.0
Q ss_pred ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhccC
Q 047733 41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLF 119 (508)
Q Consensus 41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l 119 (508)
.++++++++.+.++|... .++|++|++++| .+..++...|.++++|++|++++|.++.+ |..|..+
T Consensus 33 ~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N------------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 99 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL-PPRTKALSLSQN------------SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN 99 (562)
T ss_dssp CCEEECTTSCCCSCCTTS-CTTCCEEECCSS------------CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred CcEEEcCCCCCccCCCCC-CCCcCEEECCCC------------CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence 378899999888888643 378999999883 34445544458889999999999988865 5678889
Q ss_pred ccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhH--HHhccCCCCceEeccCCCCCCccChhhhhcCCCC--cE
Q 047733 120 QNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLV--EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQL--EE 194 (508)
Q Consensus 120 ~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~ 194 (508)
++|++|++++|.++. |.. .+++|++|++++|.++.++ ..+.++++|++|++++|. +.... +..+++| ++
T Consensus 100 ~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~ 173 (562)
T 3a79_B 100 QDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSC 173 (562)
T ss_dssp TTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEE
T ss_pred CCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeE
Confidence 999999999998887 544 7889999999999888654 678889999999998876 43322 3455555 88
Q ss_pred EEeecCCC
Q 047733 195 LYIGESPI 202 (508)
Q Consensus 195 L~l~~~~~ 202 (508)
|++++|.+
T Consensus 174 L~L~~n~l 181 (562)
T 3a79_B 174 ILLDLVSY 181 (562)
T ss_dssp EEEEESSC
T ss_pred EEeecccc
Confidence 88888876
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=4.9e-23 Score=209.05 Aligned_cols=361 Identities=17% Similarity=0.201 Sum_probs=195.5
Q ss_pred EEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCC-CC-chhhccCc
Q 047733 43 AISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLL-PL-PSSLRLFQ 120 (508)
Q Consensus 43 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-~~~~~~l~ 120 (508)
.++..++.+..+|. -.++|++|++++|. +..++...|.++++|++|++++|.+. .+ +..|..++
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~------------i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~ 79 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNS------------IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSC------------CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCc------------cCcCChhHhccCccccEEECcCCcccceECcccccccc
Confidence 45555555555655 23566666666622 22222222356666666776666664 33 34566666
Q ss_pred cccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchh-hHHH--hccCCCCceEeccCCCCCCcc-ChhhhhcCCCCcE
Q 047733 121 NLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEK-LVEE--IGQLTHLRLLDLSNCFNLKVI-PPNVISSLSQLEE 194 (508)
Q Consensus 121 ~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~ 194 (508)
+|++|++++|.++. +..++++++|++|++++|.++. ++.. +..+++|++|++++|. +..+ |...+..+++|++
T Consensus 80 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~ 158 (455)
T 3v47_A 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHV 158 (455)
T ss_dssp TCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCE
T ss_pred cCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccE
Confidence 67777776666654 4566666677777776666653 3433 5666667777776666 3333 3333556667777
Q ss_pred EEeecCCCccccccCcCCCCcccchhhccCC--CCccEEEEecccCccCCCC---------CccCCCccEEEEEecCccc
Q 047733 195 LYIGESPIMWGKVGGVDGEGRNASLDELNNL--SKLTSLEILIEDEKTLPRD---------LSFFKMLQRYSILIGDQWA 263 (508)
Q Consensus 195 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~---------l~~~~~L~~L~i~~~~~~~ 263 (508)
|++++|.+....+ ..+..+ .+|+.|+++++.....+.. +..+++|+.|.++.+.
T Consensus 159 L~L~~n~l~~~~~------------~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--- 223 (455)
T 3v47_A 159 LDLTFNKVKSICE------------EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG--- 223 (455)
T ss_dssp EECTTCCBSCCCT------------TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC---
T ss_pred EeCCCCcccccCh------------hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc---
Confidence 7766666542211 112222 4566666666654433322 1122344444333211
Q ss_pred CCCCCCCccceeeEEeccCccccc-cchh--hhcccceeEEEecCCCCcccccc----------CCcCCCCCCCcEEEEe
Q 047733 264 WDSPSDDISGIFQLTVASGANICL-NGGH--IMQLKGIKELCLGGSLDMKSVLY----------GSHGEGFPQLKHLEVV 330 (508)
Q Consensus 264 ~~~~~~~~~~l~~l~L~~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~~~~~----------~~~~~~~~~L~~L~l~ 330 (508)
.... +..+ ....++|+.|++.++........ .+.....++|++|+++
T Consensus 224 --------------------l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (455)
T 3v47_A 224 --------------------FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283 (455)
T ss_dssp --------------------CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECC
T ss_pred --------------------ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEec
Confidence 0000 0000 01125666666665432221100 0001123678888887
Q ss_pred cCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcE
Q 047733 331 ENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQF 410 (508)
Q Consensus 331 ~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~ 410 (508)
++. ++.+.. . ....+++|+.|+++++. ++.+. +.....+++|++|+++++ .+..+++ .....+++|++
T Consensus 284 ~n~-l~~~~~--~----~~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~ 351 (455)
T 3v47_A 284 KSK-IFALLK--S----VFSHFTDLEQLTLAQNE-INKID--DNAFWGLTHLLKLNLSQN-FLGSIDS-RMFENLDKLEV 351 (455)
T ss_dssp SSC-CCEECT--T----TTTTCTTCCEEECTTSC-CCEEC--TTTTTTCTTCCEEECCSS-CCCEECG-GGGTTCTTCCE
T ss_pred Ccc-ccccch--h----hcccCCCCCEEECCCCc-ccccC--hhHhcCcccCCEEECCCC-ccCCcCh-hHhcCcccCCE
Confidence 753 333211 0 23456788888887754 33332 112346788888888887 5666644 34467788888
Q ss_pred EeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeCC
Q 047733 411 IEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILECP 479 (508)
Q Consensus 411 L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C~ 479 (508)
|+++++. +..+. +..+..+++|++|+++++ ++++++...+ ..+++|+.|+++++|
T Consensus 352 L~Ls~N~-l~~~~-----------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 352 LDLSYNH-IRALG-----------DQSFLGLPNLKELALDTN-QLKSVPDGIF-DRLTSLQKIWLHTNP 406 (455)
T ss_dssp EECCSSC-CCEEC-----------TTTTTTCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred EECCCCc-ccccC-----------hhhccccccccEEECCCC-ccccCCHhHh-ccCCcccEEEccCCC
Confidence 8888764 33332 234455788888888886 6777665433 256788888887654
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=1.6e-23 Score=228.33 Aligned_cols=299 Identities=15% Similarity=0.166 Sum_probs=205.0
Q ss_pred cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcC-CCC-chhhccC
Q 047733 42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHL-LPL-PSSLRLF 119 (508)
Q Consensus 42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l-~~~~~~l 119 (508)
+..+.+++.+..+|. -.++|++|++++|.+ ..++...|.++++|++|++++|.. ..+ |..|+++
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i------------~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L 72 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYI------------RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL 72 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCC------------CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcC------------CccChhHCcccccCeEEeCCCCCCccccCHHHhcCC
Confidence 466777888899998 568999999999443 333323358999999999999955 456 6789999
Q ss_pred ccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchh-hHHH--hccCCCCceEeccCCCCCCcc-ChhhhhcCCCCc
Q 047733 120 QNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEK-LVEE--IGQLTHLRLLDLSNCFNLKVI-PPNVISSLSQLE 193 (508)
Q Consensus 120 ~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~ 193 (508)
++|++|++++|.++. |..++++++|++|++++|.+.. +|.. +.++++|++|++++|. +..+ +...++.+++|+
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCC
T ss_pred CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCC
Confidence 999999999999886 6899999999999999998874 4544 7899999999999998 4444 333479999999
Q ss_pred EEEeecCCCccccccCc--------------CCCCcccchhhccCCC------CccEEEEecccC-ccCCCCC-------
Q 047733 194 ELYIGESPIMWGKVGGV--------------DGEGRNASLDELNNLS------KLTSLEILIEDE-KTLPRDL------- 245 (508)
Q Consensus 194 ~L~l~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~l~------~L~~L~l~~~~~-~~~~~~l------- 245 (508)
+|++++|.+....+... ...-....+..++.++ .|+.|+++++.. ...+..+
T Consensus 152 ~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp EEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred EEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 99999998764322100 0000011112223333 388888887741 1111111
Q ss_pred -----------------------------c--cCCCccEEEEEecCcccC-CCCCCCccceeeEEeccCccccccchhhh
Q 047733 246 -----------------------------S--FFKMLQRYSILIGDQWAW-DSPSDDISGIFQLTVASGANICLNGGHIM 293 (508)
Q Consensus 246 -----------------------------~--~~~~L~~L~i~~~~~~~~-~~~~~~~~~l~~l~L~~~~~~~~~~~~~~ 293 (508)
. ..++|+.|.+..+..... ...+..+++|+.+.+..+...........
T Consensus 232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 311 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311 (844)
T ss_dssp CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT
T ss_pred cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc
Confidence 0 125677787765443222 33456677788888887665555445556
Q ss_pred cccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcc
Q 047733 294 QLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLR 364 (508)
Q Consensus 294 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~ 364 (508)
.+++|++|++.++. ++..... ....+++|++|+++++ .++.+... ....+++|+.|+++++.
T Consensus 312 ~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N-~i~~~~~~------~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 312 GLDNLQVLNLSYNL-LGELYSS-NFYGLPKVAYIDLQKN-HIAIIQDQ------TFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp TCSSCCEEEEESCC-CSCCCSC-SCSSCTTCCEEECCSC-CCCCCCSS------CSCSCCCCCEEEEETCC
T ss_pred CCCCCCEEECCCCC-CCccCHH-HhcCCCCCCEEECCCC-CCCccChh------hhcCCCCCCEEECCCCC
Confidence 78999999998874 4433222 2367899999999986 45443211 23456788888887753
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=8.2e-23 Score=216.25 Aligned_cols=135 Identities=23% Similarity=0.263 Sum_probs=113.7
Q ss_pred cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
++++++++|++++|.+..+++ +.++++|++|++++| .+..++...|.++++|++|++++|+++.+|
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N------------~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC------------EIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC------------CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC------------cCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 567889999999999998875 349999999999994 445566666789999999999999999887
Q ss_pred -hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCch--hhHHHhccCCCCceEeccCCCCCCccCh
Q 047733 114 -SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDME--KLVEEIGQLTHLRLLDLSNCFNLKVIPP 183 (508)
Q Consensus 114 -~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~ 183 (508)
..|.++++|++|++++|+++. + ..++++++|++|++++|.++ .+|..+..+++|++|++++|. +..++.
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 190 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYC 190 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECG
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccccc
Confidence 468899999999999999887 4 56899999999999999887 456778899999999999987 655554
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=7.8e-24 Score=214.98 Aligned_cols=364 Identities=17% Similarity=0.155 Sum_probs=248.0
Q ss_pred CCCcccEEEeecCCCCCCC-C-CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-c
Q 047733 37 ALKVCTAISLKNSNISELP-Q-VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-P 113 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~ 113 (508)
..+++++|++++|.+.+++ . +..+++|++|++.+| .....++...|.++++|++|++++|.+..+ |
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-----------~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ-----------TPGLVIRNNTFRGLSSLIILKLDYNQFLQLET 96 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCC-----------STTCEECTTTTTTCTTCCEEECTTCTTCEECT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCC-----------cccceECcccccccccCCEEeCCCCccCccCh
Confidence 5688999999999997763 3 349999999999993 333355555568999999999999999865 7
Q ss_pred hhhccCccccEEeccCCCCCC--ccc--cCCCCCCcEEEccCCCchhh-HHH-hccCCCCceEeccCCCCCCccChhhhh
Q 047733 114 SSLRLFQNLQTLSLDYCELGD--IAI--VGDLKTLVILTLRGSDMEKL-VEE-IGQLTHLRLLDLSNCFNLKVIPPNVIS 187 (508)
Q Consensus 114 ~~~~~l~~L~~L~l~~~~l~~--~~~--i~~l~~L~~L~l~~~~i~~l-p~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~ 187 (508)
..++++++|++|++++|.+++ +.. ++++++|++|++++|.+..+ |.. +..+++|++|++++|. +..+++..+.
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~ 175 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLL 175 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSG
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhh
Confidence 889999999999999999886 444 89999999999999998866 544 7899999999999988 5554443355
Q ss_pred cC--CCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCc-cCCCCCc---cCCCccEEEEEecCc
Q 047733 188 SL--SQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEK-TLPRDLS---FFKMLQRYSILIGDQ 261 (508)
Q Consensus 188 ~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~l~---~~~~L~~L~i~~~~~ 261 (508)
.+ .+|+.|++..+.+..... ..........+..+++|+.|+++++... ..+..+. ..++|+.+.+..+..
T Consensus 176 ~l~~~~L~~L~l~~n~l~~~~~----~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 176 NFQGKHFTLLRLSSITLQDMNE----YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp GGTTCEEEEEECTTCBCTTCST----TCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred ccccccccccccccCcccccch----hhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 55 789999999887763221 0000111123446688999999988733 2232221 236777777654432
Q ss_pred ccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeec
Q 047733 262 WAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDT 341 (508)
Q Consensus 262 ~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~ 341 (508)
............. ..........++|+.|++.++. +...... ....+++|++|+++++ .++.+..
T Consensus 252 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~- 316 (455)
T 3v47_A 252 MGSSFGHTNFKDP-----------DNFTFKGLEASGVKTCDLSKSK-IFALLKS-VFSHFTDLEQLTLAQN-EINKIDD- 316 (455)
T ss_dssp TSCCTTCCSSCCC-----------CTTTTGGGTTSCCCEEECCSSC-CCEECTT-TTTTCTTCCEEECTTS-CCCEECT-
T ss_pred cccccchhhhccC-----------cccccccccccCceEEEecCcc-ccccchh-hcccCCCCCEEECCCC-cccccCh-
Confidence 1110000000000 0000001134789999998864 3333222 1367899999999885 4544321
Q ss_pred ccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhh
Q 047733 342 VDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDV 421 (508)
Q Consensus 342 ~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~ 421 (508)
. ....+++|+.|+++++. ++.+. +.....+++|++|+++++ .+..+++ .....+++|++|+++++. ++.
T Consensus 317 -~----~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~ 385 (455)
T 3v47_A 317 -N----AFWGLTHLLKLNLSQNF-LGSID--SRMFENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTNQ-LKS 385 (455)
T ss_dssp -T----TTTTCTTCCEEECCSSC-CCEEC--GGGGTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CSC
T ss_pred -h----HhcCcccCCEEECCCCc-cCCcC--hhHhcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCCc-ccc
Confidence 1 23467899999999874 44432 123356899999999998 6777755 345778999999999864 555
Q ss_pred hhccccCCcCCCCCCceeeccccCeeEcCCCc
Q 047733 422 IFAAERGDESSNSNTQVIELTQLTILELCYLP 453 (508)
Q Consensus 422 i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 453 (508)
+. ...+..+++|++|++++++
T Consensus 386 ~~-----------~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 386 VP-----------DGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CC-----------TTTTTTCTTCCEEECCSSC
T ss_pred CC-----------HhHhccCCcccEEEccCCC
Confidence 43 2334568999999999875
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1e-23 Score=209.61 Aligned_cols=303 Identities=15% Similarity=0.188 Sum_probs=191.8
Q ss_pred CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--c
Q 047733 59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--I 135 (508)
Q Consensus 59 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~ 135 (508)
.+++++.|++.+ +....+|..+|..+++|++|++++|.++.++ ..+..+++|++|++++|.++. +
T Consensus 43 ~l~~l~~l~l~~------------~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 110 (390)
T 3o6n_A 43 TLNNQKIVTFKN------------STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 110 (390)
T ss_dssp GGCCCSEEEEES------------CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccCCceEEEecC------------CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH
Confidence 567888888877 4455666666778888888888888887655 467788888888888888776 3
Q ss_pred cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCC
Q 047733 136 AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEG 214 (508)
Q Consensus 136 ~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 214 (508)
..++++++|++|++++|.++.+|.. +..+++|++|++++|. +..+++..+..+++|++|++++|.++..
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------- 180 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV--------- 180 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBC---------
T ss_pred HHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCcc---------
Confidence 5678888888888888888877765 4678888888888876 5566554467788888888888776511
Q ss_pred cccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhc
Q 047733 215 RNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQ 294 (508)
Q Consensus 215 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~ 294 (508)
.++.+++|+.|+++++....++ ..++|+.+.+..+... ..+ ...
T Consensus 181 ------~~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~-----------------------~~~---~~~ 224 (390)
T 3o6n_A 181 ------DLSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSIN-----------------------VVR---GPV 224 (390)
T ss_dssp ------CGGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCC-----------------------EEE---CCC
T ss_pred ------ccccccccceeecccccccccC----CCCcceEEECCCCeee-----------------------ecc---ccc
Confidence 2455677888887776543322 2345555554422210 000 012
Q ss_pred ccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcc
Q 047733 295 LKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPL 374 (508)
Q Consensus 295 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~ 374 (508)
+++|+.|++.++. ++... ....+++|++|+++++ .++.+.. . ....+++|+.|.++++ .++.++ .
T Consensus 225 ~~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~Ls~n-~l~~~~~--~----~~~~l~~L~~L~L~~n-~l~~~~---~ 289 (390)
T 3o6n_A 225 NVELTILKLQHNN-LTDTA---WLLNYPGLVEVDLSYN-ELEKIMY--H----PFVKMQRLERLYISNN-RLVALN---L 289 (390)
T ss_dssp CSSCCEEECCSSC-CCCCG---GGGGCTTCSEEECCSS-CCCEEES--G----GGTTCSSCCEEECCSS-CCCEEE---C
T ss_pred cccccEEECCCCC-CcccH---HHcCCCCccEEECCCC-cCCCcCh--h----HccccccCCEEECCCC-cCcccC---c
Confidence 4677777776653 33321 2345777888888775 3443311 0 2234677777777774 344432 2
Q ss_pred cccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCC
Q 047733 375 AAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYL 452 (508)
Q Consensus 375 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 452 (508)
....+++|++|++++| .+..++.. ...+++|++|++++++ +..+ .+..+++|++|+++++
T Consensus 290 ~~~~l~~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~L~~N~-i~~~--------------~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 290 YGQPIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHNS-IVTL--------------KLSTHHTLKNLTLSHN 349 (390)
T ss_dssp SSSCCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSSC-CCCC--------------CCCTTCCCSEEECCSS
T ss_pred ccCCCCCCCEEECCCC-cceecCcc--ccccCcCCEEECCCCc-ccee--------------CchhhccCCEEEcCCC
Confidence 2245677777777776 55555432 3556777777777654 3222 1334667777777765
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.2e-23 Score=203.76 Aligned_cols=281 Identities=19% Similarity=0.249 Sum_probs=211.7
Q ss_pred cCCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh
Q 047733 36 DALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS 115 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~ 115 (508)
..++++++|++++|.+.+++.+..+++|++|++.+|.+ ..++ . +.++++|++|++++|.+..++.
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i------------~~~~-~-~~~l~~L~~L~l~~n~i~~~~~- 127 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI------------TDIS-A-LQNLTNLRELYLNEDNISDISP- 127 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC------------CCCG-G-GTTCTTCSEEECTTSCCCCCGG-
T ss_pred hhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc------------cCch-H-HcCCCcCCEEECcCCcccCchh-
Confidence 45789999999999999888877999999999999433 3333 2 5899999999999999998877
Q ss_pred hccCccccEEeccCCC-CCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcE
Q 047733 116 LRLFQNLQTLSLDYCE-LGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEE 194 (508)
Q Consensus 116 ~~~l~~L~~L~l~~~~-l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 194 (508)
+..+++|++|++++|. +..+..+..+++|++|++++|.+..++. +..+++|++|++++|. +..++. +..+++|+.
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~ 203 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTSLHY 203 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTTCCE
T ss_pred hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCccce
Confidence 8899999999999997 5557779999999999999998887765 8899999999999987 777766 689999999
Q ss_pred EEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccce
Q 047733 195 LYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGI 274 (508)
Q Consensus 195 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l 274 (508)
|++.+|.+... ..+..+++|+.|+++++.....+. +..+
T Consensus 204 L~l~~n~l~~~--------------~~~~~~~~L~~L~l~~n~l~~~~~-~~~l-------------------------- 242 (347)
T 4fmz_A 204 FTAYVNQITDI--------------TPVANMTRLNSLKIGNNKITDLSP-LANL-------------------------- 242 (347)
T ss_dssp EECCSSCCCCC--------------GGGGGCTTCCEEECCSSCCCCCGG-GTTC--------------------------
T ss_pred eecccCCCCCC--------------chhhcCCcCCEEEccCCccCCCcc-hhcC--------------------------
Confidence 99999877622 227788999999999887554443 3334
Q ss_pred eeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcC
Q 047733 275 FQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPV 354 (508)
Q Consensus 275 ~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~ 354 (508)
++|++|++.++ .++.+. ....+++|++|++++| .++.+. ....+++
T Consensus 243 ---------------------~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~l~~n-~l~~~~--------~~~~l~~ 288 (347)
T 4fmz_A 243 ---------------------SQLTWLEIGTN-QISDIN---AVKDLTKLKMLNVGSN-QISDIS--------VLNNLSQ 288 (347)
T ss_dssp ---------------------TTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSS-CCCCCG--------GGGGCTT
T ss_pred ---------------------CCCCEEECCCC-ccCCCh---hHhcCCCcCEEEccCC-ccCCCh--------hhcCCCC
Confidence 44555555444 222221 1245677777777775 344321 2345788
Q ss_pred cceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeecccc
Q 047733 355 LESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQ 417 (508)
Q Consensus 355 L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 417 (508)
|+.|++++|. ++... +.....+++|++|++++|+ ++.+++ ...+++|++|++++++
T Consensus 289 L~~L~L~~n~-l~~~~--~~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 289 LNSLFLNNNQ-LGNED--MEVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp CSEEECCSSC-CCGGG--HHHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred CCEEECcCCc-CCCcC--hhHhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 8888888874 33321 1123467899999999984 676655 4778999999999875
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.1e-22 Score=205.53 Aligned_cols=302 Identities=15% Similarity=0.097 Sum_probs=203.6
Q ss_pred CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733 37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL 116 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 116 (508)
.++++++|++++|.+.++|.+..+++|++|++++|.+ ..+| ++.+++|++|++++|.++.++ +
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l------------~~~~---~~~l~~L~~L~Ls~N~l~~~~--~ 102 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNI------------TTLD---LSQNTNLTYLACDSNKLTNLD--V 102 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCC------------SCCC---CTTCTTCSEEECCSSCCSCCC--C
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcC------------CeEc---cccCCCCCEEECcCCCCceee--c
Confidence 3688999999999999888777999999999999433 3333 478999999999999998875 8
Q ss_pred ccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733 117 RLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196 (508)
Q Consensus 117 ~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 196 (508)
+++++|++|++++|.++... ++.+++|++|++++|.++.++ +..+++|++|++++|..++.++ +..+++|+.|+
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ 176 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLD 176 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEE
T ss_pred CCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEE
Confidence 89999999999999988743 889999999999999988774 7889999999999997677663 67899999999
Q ss_pred eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceee
Q 047733 197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQ 276 (508)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~ 276 (508)
+++|.++. + . ++.+++|+.|+++++.....+ +..+++|+.|.+..+..... + .
T Consensus 177 ls~n~l~~-------------l-~-l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~i-p-~-------- 229 (457)
T 3bz5_A 177 CSFNKITE-------------L-D-VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI-D-V-------- 229 (457)
T ss_dssp CCSSCCCC-------------C-C-CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C-C--------
T ss_pred CCCCccce-------------e-c-cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccccc-C-c--------
Confidence 99998761 1 1 678889999999998866653 66788888888865442211 1 1
Q ss_pred EEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeeccc--CCCCCCCcCcC
Q 047733 277 LTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVD--RATAPTTAFPV 354 (508)
Q Consensus 277 l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~--~~~~~~~~~p~ 354 (508)
..+++|+.|++.++ .++... ...+++|+.|.+.. ++++.+.-... ....+...+++
T Consensus 230 ----------------~~l~~L~~L~l~~N-~l~~~~----~~~l~~L~~L~l~~-n~L~~L~l~~n~~~~~~~~~~l~~ 287 (457)
T 3bz5_A 230 ----------------TPLTQLTYFDCSVN-PLTELD----VSTLSKLTTLHCIQ-TDLLEIDLTHNTQLIYFQAEGCRK 287 (457)
T ss_dssp ----------------TTCTTCSEEECCSS-CCSCCC----CTTCTTCCEEECTT-CCCSCCCCTTCTTCCEEECTTCTT
T ss_pred ----------------cccCCCCEEEeeCC-cCCCcC----HHHCCCCCEEeccC-CCCCEEECCCCccCCccccccccc
Confidence 23456666666554 233221 23345555444433 12221100000 00002234566
Q ss_pred cceeeccCcccccccccC-----cccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeecc
Q 047733 355 LESLFLRDLRNLEKICRG-----PLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTE 415 (508)
Q Consensus 355 L~~L~l~~c~~l~~~~~~-----~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 415 (508)
|+.|++++|..+..++.. .+....+++|++|+++++ .++.++ +..+++|+.|++++
T Consensus 288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~----l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD----VSHNTKLKSLSCVN 348 (457)
T ss_dssp CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC----CTTCTTCSEEECCS
T ss_pred CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc----cccCCcCcEEECCC
Confidence 777777776655444311 011223455555555554 344431 35567777777655
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=1.5e-22 Score=210.98 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=115.4
Q ss_pred CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--c
Q 047733 59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--I 135 (508)
Q Consensus 59 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~ 135 (508)
.+...++++++++ ....+|..+ .++|++|++++|.++.++ ..+.++++|++|++++|.++. +
T Consensus 29 ~~~~~~~l~ls~~------------~L~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 93 (562)
T 3a79_B 29 SNELESMVDYSNR------------NLTHVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF 93 (562)
T ss_dssp ----CCEEECTTS------------CCCSCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT
T ss_pred ccCCCcEEEcCCC------------CCccCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH
Confidence 5566689999984 344455544 378999999999999876 689999999999999999987 5
Q ss_pred cccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccCh-hhhhcCCCCcEEEeecCCCccccccCcCCCC
Q 047733 136 AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPP-NVISSLSQLEELYIGESPIMWGKVGGVDGEG 214 (508)
Q Consensus 136 ~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 214 (508)
..++++++|++|++++|.++.+|.. .+++|++|++++|. +..++. ..++.+++|++|++++|.+...
T Consensus 94 ~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--------- 161 (562)
T 3a79_B 94 HVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQL--------- 161 (562)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTT---------
T ss_pred HHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccC---------
Confidence 7899999999999999999999866 89999999999988 666542 2389999999999999887521
Q ss_pred cccchhhccCCCCccEEEEecccC
Q 047733 215 RNASLDELNNLSKLTSLEILIEDE 238 (508)
Q Consensus 215 ~~~~~~~l~~l~~L~~L~l~~~~~ 238 (508)
.+..+..+ +|+.|+++++..
T Consensus 162 ---~~~~l~~L-~L~~L~L~~n~l 181 (562)
T 3a79_B 162 ---DLLPVAHL-HLSCILLDLVSY 181 (562)
T ss_dssp ---TTGGGTTS-CEEEEEEEESSC
T ss_pred ---chhhhhhc-eeeEEEeecccc
Confidence 12233333 447777776653
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=4e-23 Score=208.79 Aligned_cols=274 Identities=18% Similarity=0.144 Sum_probs=195.6
Q ss_pred CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCCccc
Q 047733 58 FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGDIAI 137 (508)
Q Consensus 58 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~ 137 (508)
..+++|++|++++|. ...+| . +..+++|++|++++|.++.+| ++.+++|++|++++|.++...
T Consensus 39 ~~l~~L~~L~Ls~n~------------l~~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~- 101 (457)
T 3bz5_A 39 EQLATLTSLDCHNSS------------ITDMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD- 101 (457)
T ss_dssp HHHTTCCEEECCSSC------------CCCCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred hHcCCCCEEEccCCC------------cccCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-
Confidence 378999999999843 33344 2 478999999999999999886 889999999999999988843
Q ss_pred cCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCccc
Q 047733 138 VGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNA 217 (508)
Q Consensus 138 i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 217 (508)
++++++|++|++++|.++.+| +..+++|++|++++|. +..++ ++.+++|++|+++.|.....
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~~~------------ 163 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKITK------------ 163 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCCCC------------
T ss_pred cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcccc------------
Confidence 889999999999999998876 8899999999999987 66664 67899999999998854421
Q ss_pred chhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccc
Q 047733 218 SLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKG 297 (508)
Q Consensus 218 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~ 297 (508)
..++.+++|+.|+++++....++ +..+++|+.|.+..+..... ....+++
T Consensus 164 --~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~--------------------------~l~~l~~ 213 (457)
T 3bz5_A 164 --LDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL--------------------------DLNQNIQ 213 (457)
T ss_dssp --CCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC--------------------------CCTTCTT
T ss_pred --cccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee--------------------------ccccCCC
Confidence 14678899999999999877766 66788888888764431110 1225689
Q ss_pred eeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeecc----------Cccccc
Q 047733 298 IKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLR----------DLRNLE 367 (508)
Q Consensus 298 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~----------~c~~l~ 367 (508)
|+.|++.++ .++.++ ...+++|++|+++++ .++.+ ....+++|+.|.+. ++..+.
T Consensus 214 L~~L~Ls~N-~l~~ip----~~~l~~L~~L~l~~N-~l~~~---------~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 214 LTFLDCSSN-KLTEID----VTPLTQLTYFDCSVN-PLTEL---------DVSTLSKLTTLHCIQTDLLEIDLTHNTQLI 278 (457)
T ss_dssp CSEEECCSS-CCSCCC----CTTCTTCSEEECCSS-CCSCC---------CCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred CCEEECcCC-cccccC----ccccCCCCEEEeeCC-cCCCc---------CHHHCCCCCEEeccCCCCCEEECCCCccCC
Confidence 999999876 444432 467899999999985 44433 23356666655544 333222
Q ss_pred ccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhh
Q 047733 368 KICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDV 421 (508)
Q Consensus 368 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~ 421 (508)
.+ +...+++|+.|++++|..+..++. ..++|+.|++++|++|+.
T Consensus 279 ~~-----~~~~l~~L~~L~Ls~n~~l~~l~~-----~~~~L~~L~l~~~~~L~~ 322 (457)
T 3bz5_A 279 YF-----QAEGCRKIKELDVTHNTQLYLLDC-----QAAGITELDLSQNPKLVY 322 (457)
T ss_dssp EE-----ECTTCTTCCCCCCTTCTTCCEEEC-----TTCCCSCCCCTTCTTCCE
T ss_pred cc-----cccccccCCEEECCCCcccceecc-----CCCcceEechhhcccCCE
Confidence 22 224456677777776666555542 234455555554444433
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=8.4e-23 Score=203.00 Aligned_cols=301 Identities=16% Similarity=0.187 Sum_probs=233.2
Q ss_pred CCcccEEEeecCCCCCCCCC--CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-h
Q 047733 38 LKVCTAISLKNSNISELPQV--FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-S 114 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~ 114 (508)
+++++++++.++.+..+|.. ..+++|++|++.+| .+..++...|..+++|++|++++|.++.++ .
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n------------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL------------QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS------------CCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCC------------cccccChhhccCCCCcCEEECCCCCCCcCCHH
Confidence 58899999999999999874 38999999999983 344455444689999999999999998765 5
Q ss_pred hhccCccccEEeccCCCCCC-cc-ccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCCC
Q 047733 115 SLRLFQNLQTLSLDYCELGD-IA-IVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQ 191 (508)
Q Consensus 115 ~~~~l~~L~~L~l~~~~l~~-~~-~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 191 (508)
.++++++|++|++++|.++. +. .++++++|++|++++|.+..++ ..+..+++|++|++++|. +..++ +..+++
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~ 187 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPS 187 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTT
T ss_pred HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccc
Confidence 68999999999999999988 54 4689999999999999998765 458899999999999987 66665 578899
Q ss_pred CcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCc
Q 047733 192 LEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDI 271 (508)
Q Consensus 192 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~ 271 (508)
|+.|+++++.+. .+...++|+.|+++++....++.. ..++|+.|.+..+...
T Consensus 188 L~~L~l~~n~l~-----------------~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~--------- 239 (390)
T 3o6n_A 188 LFHANVSYNLLS-----------------TLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLT--------- 239 (390)
T ss_dssp CSEEECCSSCCS-----------------EEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCC---------
T ss_pred cceeeccccccc-----------------ccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCc---------
Confidence 999999988664 234456899999999987666554 3567888877643311
Q ss_pred cceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCc
Q 047733 272 SGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTA 351 (508)
Q Consensus 272 ~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 351 (508)
.......+++|++|++.++ .++..... ....+++|++|+++++ .++.+.. ....
T Consensus 240 ----------------~~~~l~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-------~~~~ 293 (390)
T 3o6n_A 240 ----------------DTAWLLNYPGLVEVDLSYN-ELEKIMYH-PFVKMQRLERLYISNN-RLVALNL-------YGQP 293 (390)
T ss_dssp ----------------CCGGGGGCTTCSEEECCSS-CCCEEESG-GGTTCSSCCEEECCSS-CCCEEEC-------SSSC
T ss_pred ----------------ccHHHcCCCCccEEECCCC-cCCCcChh-HccccccCCEEECCCC-cCcccCc-------ccCC
Confidence 0123346799999999887 44443222 2367899999999995 5665432 2346
Q ss_pred CcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeecccc
Q 047733 352 FPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQ 417 (508)
Q Consensus 352 ~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 417 (508)
+|+|+.|+++++ .++.++ .....+++|++|+++++ .++.++ ...+++|+.|++++++
T Consensus 294 l~~L~~L~L~~n-~l~~~~---~~~~~l~~L~~L~L~~N-~i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 294 IPTLKVLDLSHN-HLLHVE---RNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CTTCCEEECCSS-CCCCCG---GGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred CCCCCEEECCCC-cceecC---ccccccCcCCEEECCCC-ccceeC----chhhccCCEEEcCCCC
Confidence 899999999997 455543 23467899999999998 466664 3678999999999865
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=8e-23 Score=214.32 Aligned_cols=304 Identities=14% Similarity=0.191 Sum_probs=221.8
Q ss_pred CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--c
Q 047733 59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--I 135 (508)
Q Consensus 59 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~ 135 (508)
.+++++.+++.+ +....+|..+|..+++|++|++++|.++.++ ..|+.+++|++|++++|.++. +
T Consensus 49 ~l~~l~~l~l~~------------~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 49 TLNNQKIVTFKN------------STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp GGCCCSEEEESS------------CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCCceEEEeeC------------CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH
Confidence 678889999887 4556677777788999999999999998765 478899999999999999887 3
Q ss_pred cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCC
Q 047733 136 AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEG 214 (508)
Q Consensus 136 ~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 214 (508)
..++++++|++|++++|.+..+|.. +..+++|++|++++|. +..+++..++.+++|++|++++|.+...
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------- 186 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV--------- 186 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBC---------
T ss_pred HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCc---------
Confidence 6678999999999999998888866 4789999999999987 6666654478899999999998877521
Q ss_pred cccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhc
Q 047733 215 RNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQ 294 (508)
Q Consensus 215 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~ 294 (508)
.++.+++|+.|+++++....+ ....+|+.|.+..+... ..+ ...
T Consensus 187 ------~~~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~-----------------------~~~---~~~ 230 (597)
T 3oja_B 187 ------DLSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSIN-----------------------VVR---GPV 230 (597)
T ss_dssp ------CGGGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCC-----------------------EEE---CSC
T ss_pred ------ChhhhhhhhhhhcccCccccc----cCCchhheeeccCCccc-----------------------ccc---ccc
Confidence 255677889999888764433 23456676666533210 000 112
Q ss_pred ccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcc
Q 047733 295 LKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPL 374 (508)
Q Consensus 295 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~ 374 (508)
+++|+.|++.++. ++.. .....+++|++|+++++ .++.+.. . ....+++|+.|.++++ .++.++ .
T Consensus 231 ~~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~~--~----~~~~l~~L~~L~Ls~N-~l~~l~---~ 295 (597)
T 3oja_B 231 NVELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYN-ELEKIMY--H----PFVKMQRLERLYISNN-RLVALN---L 295 (597)
T ss_dssp CSCCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSS-CCCEEES--G----GGTTCSSCCEEECTTS-CCCEEE---C
T ss_pred CCCCCEEECCCCC-CCCC---hhhccCCCCCEEECCCC-ccCCCCH--H----HhcCccCCCEEECCCC-CCCCCC---c
Confidence 4689999998763 4433 22356899999999985 4544321 1 2346789999999985 455543 2
Q ss_pred cccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCc
Q 047733 375 AAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLP 453 (508)
Q Consensus 375 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 453 (508)
....+|+|+.|++++| .+..+|. .+..+++|+.|++++++ +..+ .+..+++|+.|++++++
T Consensus 296 ~~~~l~~L~~L~Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~-l~~~--------------~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 296 YGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTL--------------KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp SSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCC--------------CCCTTCCCSEEECCSSC
T ss_pred ccccCCCCcEEECCCC-CCCccCc--ccccCCCCCEEECCCCC-CCCc--------------ChhhcCCCCEEEeeCCC
Confidence 3356899999999997 5666654 24778999999999875 3322 24458899999999875
No 35
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=8.2e-24 Score=222.16 Aligned_cols=401 Identities=13% Similarity=0.046 Sum_probs=242.0
Q ss_pred CCcccEEEeecCCC----CCCCCC------------C-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCC-c
Q 047733 38 LKVCTAISLKNSNI----SELPQV------------F-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRE-L 99 (508)
Q Consensus 38 ~~~lr~L~l~~~~~----~~l~~~------------~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-L 99 (508)
++++++|++.++.. ..+|.. . .+++|++|++.+| ......+..+...+++ |
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-----------~i~~~~~~~l~~~~~~~L 140 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-----------IVSDLDLDRLAKARADDL 140 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-----------BCCHHHHHHHHHHHGGGC
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-----------EecHHHHHHHHHhccccC
Confidence 56689999987543 112211 1 5788999999883 1111222222122334 8
Q ss_pred cEEEecCCc-CC--CCchhhccCccccEEeccCCCCCC--c----cccCCCCCCcEEEccCCCch-----hhHHHhccCC
Q 047733 100 RVLDFARMH-LL--PLPSSLRLFQNLQTLSLDYCELGD--I----AIVGDLKTLVILTLRGSDME-----KLVEEIGQLT 165 (508)
Q Consensus 100 ~~L~l~~~~-~~--~l~~~~~~l~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~i~-----~lp~~~~~l~ 165 (508)
++|++++|. ++ .++....++++|++|++++|.+++ . .....+++|++|+++++.+. .++..+.+++
T Consensus 141 ~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~ 220 (592)
T 3ogk_B 141 ETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220 (592)
T ss_dssp CEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred cEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence 899998886 22 244445578889999998887654 1 23456788999999888664 6666677888
Q ss_pred CCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCC
Q 047733 166 HLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDL 245 (508)
Q Consensus 166 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l 245 (508)
+|++|++++|. +..++.. +..+++|++|.+........ .......+..+++|+.|++.+.....++..+
T Consensus 221 ~L~~L~L~~~~-~~~l~~~-~~~~~~L~~L~l~~~~~~~~---------~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~ 289 (592)
T 3ogk_B 221 SLVSVKVGDFE-ILELVGF-FKAAANLEEFCGGSLNEDIG---------MPEKYMNLVFPRKLCRLGLSYMGPNEMPILF 289 (592)
T ss_dssp TCCEEECSSCB-GGGGHHH-HHHCTTCCEEEECBCCCCTT---------CTTSSSCCCCCTTCCEEEETTCCTTTGGGGG
T ss_pred CCcEEeccCcc-HHHHHHH-HhhhhHHHhhcccccccccc---------hHHHHHHhhccccccccCccccchhHHHHHH
Confidence 99999998876 5556654 78888999998875332211 1123355677788888888776666677777
Q ss_pred ccCCCccEEEEEecCcccCCC---CCCCccceeeEEeccCccccccchhhhcccceeEEEecC----------CCCcccc
Q 047733 246 SFFKMLQRYSILIGDQWAWDS---PSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGG----------SLDMKSV 312 (508)
Q Consensus 246 ~~~~~L~~L~i~~~~~~~~~~---~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~~~~~ 312 (508)
..+++|+.|.+..+. .++.. ....+++|+.+.+...............+++|++|++.+ |..+++.
T Consensus 290 ~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 290 PFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp GGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred hhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence 778888888887655 22211 124455676666662111111122234578889998884 6666654
Q ss_pred ccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccC---cccccccccC---cccccccccCCeEE
Q 047733 313 LYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRD---LRNLEKICRG---PLAAESFCQLRDMR 386 (508)
Q Consensus 313 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~---c~~l~~~~~~---~~~~~~~~~L~~L~ 386 (508)
........+++|++|.+ .|..++.- ... . -...+++|+.|++.+ |+.++..+.. ......+++|++|+
T Consensus 369 ~~~~l~~~~~~L~~L~l-~~~~l~~~--~~~-~--l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 369 GLIALAQGCQELEYMAV-YVSDITNE--SLE-S--IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp HHHHHHHHCTTCSEEEE-EESCCCHH--HHH-H--HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHhhCccCeEEEe-ecCCccHH--HHH-H--HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 32222245788888888 33444321 000 0 011367888888874 4455442100 00123478888888
Q ss_pred EcCCCC-cceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCcccc
Q 047733 387 VNGCDK-LKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHF 465 (508)
Q Consensus 387 l~~c~~-l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~ 465 (508)
++.|.. +.+.....+...+++|++|++++|+ +.+... ...+..+++|++|++++|+ +++........
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~----------~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~ 510 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL----------MEFSRGCPNLQKLEMRGCC-FSERAIAAAVT 510 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH----------HHHHTCCTTCCEEEEESCC-CBHHHHHHHHH
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH----------HHHHhcCcccCeeeccCCC-CcHHHHHHHHH
Confidence 877764 3433232334557888888888775 332111 1122346888888888886 55443333333
Q ss_pred ccCCccEEEEeeCC
Q 047733 466 EFPSLEKLRILECP 479 (508)
Q Consensus 466 ~~p~L~~L~i~~C~ 479 (508)
.+|+|+.|++++|+
T Consensus 511 ~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 511 KLPSLRYLWVQGYR 524 (592)
T ss_dssp HCSSCCEEEEESCB
T ss_pred hcCccCeeECcCCc
Confidence 56888888888886
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=4e-22 Score=201.33 Aligned_cols=35 Identities=14% Similarity=0.037 Sum_probs=9.0
Q ss_pred CCcccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCC
Q 047733 38 LKVCTAISLKNSNISELPQVF-ECPQLKYFHIANDP 72 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~ 72 (508)
.+.+++|++++|.++.+|... .+++|++|++++|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~ 45 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE 45 (454)
T ss_dssp ------------------------CCHHHHHHHHHH
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCc
Confidence 356888888888887777543 78888888887743
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=5.1e-21 Score=195.37 Aligned_cols=154 Identities=21% Similarity=0.267 Sum_probs=76.9
Q ss_pred CCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch
Q 047733 37 ALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS 114 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~ 114 (508)
++++++.|++++|.+.+++. +..+++|++|++.+| .+..++...|.++++|++|++++|.++.+|.
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n------------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN------------IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS------------CCCEECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC------------ccCEeChhhhhCCccCCEEECCCCcCCccCc
Confidence 34455555555555544432 225555555555552 2222222223555555555555555555443
Q ss_pred -hhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCC
Q 047733 115 -SLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLS 190 (508)
Q Consensus 115 -~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 190 (508)
.|.++++|++|++++|.++. +..+.++++|++|++++|.+..++ ..+..+++|++|++++|. +..++...+..++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~ 176 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLH 176 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccC
Confidence 34555555555555555544 344555555555555555554332 334455555555555554 4444443345555
Q ss_pred CCcEEEeecCCCc
Q 047733 191 QLEELYIGESPIM 203 (508)
Q Consensus 191 ~L~~L~l~~~~~~ 203 (508)
+|+.|++.+|.+.
T Consensus 177 ~L~~L~l~~n~i~ 189 (477)
T 2id5_A 177 GLIVLRLRHLNIN 189 (477)
T ss_dssp TCCEEEEESCCCC
T ss_pred CCcEEeCCCCcCc
Confidence 5555555555443
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.2e-21 Score=205.46 Aligned_cols=301 Identities=16% Similarity=0.190 Sum_probs=232.0
Q ss_pred CCcccEEEeecCCCCCCCCCC--CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-h
Q 047733 38 LKVCTAISLKNSNISELPQVF--ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-S 114 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~ 114 (508)
..+++.+++.++.+..+|... .+++|++|++.+| .+..++...|..+++|++|++++|.++.++ .
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL------------QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS------------CCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC------------CCCCCChHHhcCCCCCCEEECCCCcCCCCCHH
Confidence 577899999999999998743 8999999999993 334444444689999999999999998776 4
Q ss_pred hhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCCC
Q 047733 115 SLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQ 191 (508)
Q Consensus 115 ~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 191 (508)
.|+.+++|++|++++|.++. | ..++++++|++|++++|.+..++ ..+..+++|++|++++|. +..++ ++.+++
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~ 193 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPS 193 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTT
T ss_pred HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhh
Confidence 57999999999999999988 5 44689999999999999988665 468899999999999987 66665 467899
Q ss_pred CcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCc
Q 047733 192 LEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDI 271 (508)
Q Consensus 192 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~ 271 (508)
|+.|++++|.+. .+...++|+.|+++++....++... .++|+.|.+..+...
T Consensus 194 L~~L~l~~n~l~-----------------~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~--------- 245 (597)
T 3oja_B 194 LFHANVSYNLLS-----------------TLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLT--------- 245 (597)
T ss_dssp CSEEECCSSCCS-----------------EEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCC---------
T ss_pred hhhhhcccCccc-----------------cccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCC---------
Confidence 999999988664 2345568999999999876666543 467787777543311
Q ss_pred cceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCc
Q 047733 272 SGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTA 351 (508)
Q Consensus 272 ~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 351 (508)
.......+++|+.|++.++. ++...+. ....+++|++|+++++ .++.+.. ....
T Consensus 246 ----------------~~~~l~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l~~-------~~~~ 299 (597)
T 3oja_B 246 ----------------DTAWLLNYPGLVEVDLSYNE-LEKIMYH-PFVKMQRLERLYISNN-RLVALNL-------YGQP 299 (597)
T ss_dssp ----------------CCGGGGGCTTCSEEECCSSC-CCEEESG-GGTTCSSCCEEECTTS-CCCEEEC-------SSSC
T ss_pred ----------------CChhhccCCCCCEEECCCCc-cCCCCHH-HhcCccCCCEEECCCC-CCCCCCc-------cccc
Confidence 11233468899999998864 4444322 2367899999999985 5665432 2345
Q ss_pred CcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeecccc
Q 047733 352 FPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQ 417 (508)
Q Consensus 352 ~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 417 (508)
+|+|+.|+++++. ++.++ .....+++|+.|++++| .+..++ ...+++|+.|++++++
T Consensus 300 l~~L~~L~Ls~N~-l~~i~---~~~~~l~~L~~L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 300 IPTLKVLDLSHNH-LLHVE---RNQPQFDRLENLYLDHN-SIVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CTTCCEEECCSSC-CCCCG---GGHHHHTTCSEEECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred CCCCcEEECCCCC-CCccC---cccccCCCCCEEECCCC-CCCCcC----hhhcCCCCEEEeeCCC
Confidence 8999999999974 44443 23467899999999998 466654 3678999999999866
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=2.1e-21 Score=198.24 Aligned_cols=313 Identities=14% Similarity=0.129 Sum_probs=236.6
Q ss_pred ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhccC
Q 047733 41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLF 119 (508)
Q Consensus 41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l 119 (508)
-+.++..++.+..+|... .++++.|++.+| .+..++...|.++++|++|++++|.++.+ |..|.++
T Consensus 13 ~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n------------~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 79 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGI-PTETRLLDLGKN------------RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL 79 (477)
T ss_dssp TTEEECCSCCCSSCCSCC-CTTCSEEECCSS------------CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEECCCC------------ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCC
Confidence 356777788888888643 468999999994 34444444468999999999999999865 6789999
Q ss_pred ccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhh-HHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733 120 QNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196 (508)
Q Consensus 120 ~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 196 (508)
++|++|++++|.++. + ..++++++|++|++++|.+..+ +..+..+++|++|++++|. +..++...+..+++|++|+
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEE
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEE
Confidence 999999999999888 5 5688999999999999988855 4568899999999999987 6666654488999999999
Q ss_pred eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCC-CCccCCCccEEEEEecCcccC-CCCCCCccce
Q 047733 197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPR-DLSFFKMLQRYSILIGDQWAW-DSPSDDISGI 274 (508)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~-~~~~~~~~~l 274 (508)
+++|.+... ....+..+++|+.|++.++.....+. .+..+++|+.|.+..+..... ........+|
T Consensus 159 l~~n~l~~~------------~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 159 LEKCNLTSI------------PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp EESCCCSSC------------CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred CCCCcCccc------------ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence 999987622 22457889999999999988655544 567899999999987654322 1222223367
Q ss_pred eeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcC
Q 047733 275 FQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPV 354 (508)
Q Consensus 275 ~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~ 354 (508)
+.+.+..+.....+......+++|+.|++.++. ++.+... ....+++|++|++.++ .++.+.. . ....+++
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~--~----~~~~l~~ 297 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGS-MLHELLRLQEIQLVGG-QLAVVEP--Y----AFRGLNY 297 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTT-SCTTCTTCCEEECCSS-CCSEECT--T----TBTTCTT
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChh-hccccccCCEEECCCC-ccceECH--H----HhcCccc
Confidence 778887765555555556678999999998874 4544332 2367899999999985 4554321 1 3346799
Q ss_pred cceeeccCcccccccccCcccccccccCCeEEEcCCC
Q 047733 355 LESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCD 391 (508)
Q Consensus 355 L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 391 (508)
|+.|+++++ .++.++.. ....+++|++|++.+.+
T Consensus 298 L~~L~L~~N-~l~~~~~~--~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 298 LRVLNVSGN-QLTTLEES--VFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCEEECCSS-CCSCCCGG--GBSCGGGCCEEECCSSC
T ss_pred CCEEECCCC-cCceeCHh--HcCCCcccCEEEccCCC
Confidence 999999996 45555322 23568999999999864
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=7.2e-21 Score=192.13 Aligned_cols=296 Identities=18% Similarity=0.150 Sum_probs=146.8
Q ss_pred ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCc
Q 047733 41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQ 120 (508)
Q Consensus 41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 120 (508)
+++|++++|.+.++|.. .++|++|++++|.... +|. .+.+|++|++++|.++.++... +
T Consensus 73 l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~------------lp~----~~~~L~~L~l~~n~l~~l~~~~---~ 131 (454)
T 1jl5_A 73 AHELELNNLGLSSLPEL--PPHLESLVASCNSLTE------------LPE----LPQSLKSLLVDNNNLKALSDLP---P 131 (454)
T ss_dssp CSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSS------------CCC----CCTTCCEEECCSSCCSCCCSCC---T
T ss_pred CCEEEecCCccccCCCC--cCCCCEEEccCCcCCc------------ccc----ccCCCcEEECCCCccCcccCCC---C
Confidence 35555555555555542 3455666665532222 221 1255666666666655544211 4
Q ss_pred cccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecC
Q 047733 121 NLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGES 200 (508)
Q Consensus 121 ~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 200 (508)
+|++|++++|.++..+.++++++|++|++++|.++.+|.. ..+|++|++++|. +..+|. ++.+++|++|++++|
T Consensus 132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~-l~~l~~--~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNN 205 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSS
T ss_pred CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCc-CCcCcc--ccCCCCCCEEECCCC
Confidence 5666666666655522466666666666666665555432 2356666666654 444552 456666666666665
Q ss_pred CCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEec
Q 047733 201 PIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVA 280 (508)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~ 280 (508)
.+.... . ..++|+.|+++++....+|. +..+++|+.|.+..+...... ....+++.+.+.
T Consensus 206 ~l~~l~-------------~---~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~---~~~~~L~~L~l~ 265 (454)
T 1jl5_A 206 SLKKLP-------------D---LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLP---DLPPSLEALNVR 265 (454)
T ss_dssp CCSSCC-------------C---CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCC---SCCTTCCEEECC
T ss_pred cCCcCC-------------C---CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccc---ccccccCEEECC
Confidence 544110 0 01356666666665545542 455566666655543221111 112334334443
Q ss_pred cCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeec
Q 047733 281 SGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFL 360 (508)
Q Consensus 281 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l 360 (508)
.+.....+ ..+++|++|++.++. ++.+.. ..++|++|+++++ .++.+. ...++|+.|++
T Consensus 266 ~N~l~~l~----~~~~~L~~L~ls~N~-l~~l~~-----~~~~L~~L~l~~N-~l~~i~----------~~~~~L~~L~L 324 (454)
T 1jl5_A 266 DNYLTDLP----ELPQSLTFLDVSENI-FSGLSE-----LPPNLYYLNASSN-EIRSLC----------DLPPSLEELNV 324 (454)
T ss_dssp SSCCSCCC----CCCTTCCEEECCSSC-CSEESC-----CCTTCCEEECCSS-CCSEEC----------CCCTTCCEEEC
T ss_pred CCcccccC----cccCcCCEEECcCCc-cCcccC-----cCCcCCEEECcCC-cCCccc----------CCcCcCCEEEC
Confidence 33211111 123566666665542 333211 1256666666654 333221 01136677777
Q ss_pred cCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeecccc
Q 047733 361 RDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQ 417 (508)
Q Consensus 361 ~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 417 (508)
+++ .++.++ ..+++|++|++++| .++.+|. .+++|++|++++++
T Consensus 325 s~N-~l~~lp------~~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 325 SNN-KLIELP------ALPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP 368 (454)
T ss_dssp CSS-CCSCCC------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC
T ss_pred CCC-cccccc------ccCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCC
Confidence 664 233322 12466777777665 4555543 35667777776643
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=8.7e-21 Score=200.67 Aligned_cols=146 Identities=22% Similarity=0.339 Sum_probs=118.6
Q ss_pred EEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccc
Q 047733 44 ISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNL 122 (508)
Q Consensus 44 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L 122 (508)
.+=++..+..+|... -+++++|++++| .+..++...|.++++|++|++++|.++.++ ..|.++++|
T Consensus 36 ~~c~~~~l~~vP~~l-p~~~~~LdLs~N------------~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L 102 (635)
T 4g8a_A 36 YQCMELNFYKIPDNL-PFSTKNLDLSFN------------PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 102 (635)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTS------------CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred EECCCCCcCccCCCC-CcCCCEEEeeCC------------CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCC
Confidence 333344556777532 148999999994 445555555799999999999999999876 468999999
Q ss_pred cEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCCc--cChhhhhcCCCCcEEEe
Q 047733 123 QTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLKV--IPPNVISSLSQLEELYI 197 (508)
Q Consensus 123 ~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l 197 (508)
++|++++|+++. + ..+.++.+|++|++++|.++.+|. .++++++|++|++++|. +.. .|.. ++.+++|++|++
T Consensus 103 ~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L 180 (635)
T 4g8a_A 103 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDL 180 (635)
T ss_dssp CEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEEC
T ss_pred CEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcc
Confidence 999999999988 5 678999999999999999998875 47899999999999987 544 3444 789999999999
Q ss_pred ecCCCcc
Q 047733 198 GESPIMW 204 (508)
Q Consensus 198 ~~~~~~~ 204 (508)
++|.+..
T Consensus 181 ~~N~l~~ 187 (635)
T 4g8a_A 181 SSNKIQS 187 (635)
T ss_dssp CSSCCCE
T ss_pred cCccccc
Confidence 9987754
No 42
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.86 E-value=1.2e-23 Score=220.92 Aligned_cols=404 Identities=15% Similarity=0.091 Sum_probs=215.1
Q ss_pred CCcccEEEeecCCC-CCC---CC------------CC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCcc
Q 047733 38 LKVCTAISLKNSNI-SEL---PQ------------VF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELR 100 (508)
Q Consensus 38 ~~~lr~L~l~~~~~-~~l---~~------------~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 100 (508)
++++++|++.++.. .++ +. +. .+++|+.|++.++ ......+..+...+++|+
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-----------~~~~~~~~~l~~~~~~L~ 133 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-----------VVTDDCLELIAKSFKNFK 133 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-----------BCCHHHHHHHHHHCTTCC
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-----------EEcHHHHHHHHHhCCCCc
Confidence 57799999998753 211 11 11 6789999999882 222223334434689999
Q ss_pred EEEecCC-cCCC--CchhhccCccccEEeccCCCCCC--cccc----CCCCCCcEEEccCCC--ch--hhHHHhccCCCC
Q 047733 101 VLDFARM-HLLP--LPSSLRLFQNLQTLSLDYCELGD--IAIV----GDLKTLVILTLRGSD--ME--KLVEEIGQLTHL 167 (508)
Q Consensus 101 ~L~l~~~-~~~~--l~~~~~~l~~L~~L~l~~~~l~~--~~~i----~~l~~L~~L~l~~~~--i~--~lp~~~~~l~~L 167 (508)
+|++++| .++. ++..+.++++|++|++++|.+++ +..+ ..+++|++|+++++. +. .++..+.++++|
T Consensus 134 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L 213 (594)
T 2p1m_B 134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213 (594)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTC
T ss_pred EEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCC
Confidence 9999998 5543 55656689999999999998664 2333 367799999999885 32 455555678999
Q ss_pred ceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEE-EEecccCccCCCCCc
Q 047733 168 RLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSL-EILIEDEKTLPRDLS 246 (508)
Q Consensus 168 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~l~ 246 (508)
++|++++|..+..++.. +..+++|++|.+..+..... ......+...+..+++|+.+ .+.......++..+.
T Consensus 214 ~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~------~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~ 286 (594)
T 2p1m_B 214 KSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVR------PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS 286 (594)
T ss_dssp CEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCC------HHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH
T ss_pred cEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccc------hhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH
Confidence 99999988656665554 77889999998766532100 00011123345556666665 232222333333334
Q ss_pred cCCCccEEEEEecCcccCC---CCCCCccceeeEEeccCccccccchhhhcccceeEEEecC--------CCCccccccC
Q 047733 247 FFKMLQRYSILIGDQWAWD---SPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGG--------SLDMKSVLYG 315 (508)
Q Consensus 247 ~~~~L~~L~i~~~~~~~~~---~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~--------~~~~~~~~~~ 315 (508)
.+++|+.|.+..+. .+.. .....+++|+.+.+..+............+++|++|++.+ +..+++....
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 45566666655443 1110 0112233444444443311000111222466777777733 3333332211
Q ss_pred CcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeecc-----CcccccccccC---cccccccccCCeEEE
Q 047733 316 SHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLR-----DLRNLEKICRG---PLAAESFCQLRDMRV 387 (508)
Q Consensus 316 ~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~-----~c~~l~~~~~~---~~~~~~~~~L~~L~l 387 (508)
....++++|++|.+. |..++... .. . ....+|+|+.|++. +|..++..+.. ......+++|++|++
T Consensus 366 ~l~~~~~~L~~L~~~-~~~l~~~~--~~-~--l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 366 SVSMGCPKLESVLYF-CRQMTNAA--LI-T--IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp HHHHHCTTCCEEEEE-ESCCCHHH--HH-H--HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHhchhHHHHHHh-cCCcCHHH--HH-H--HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 111235677777443 34333210 00 0 01135677777776 45555432100 000234566777777
Q ss_pred cCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCcccccc
Q 047733 388 NGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEF 467 (508)
Q Consensus 388 ~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~ 467 (508)
++ .+.+.....+...+++|++|++++|. +.+.... .-...+++|++|++++|+. ++.........+
T Consensus 440 ~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~----------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l 505 (594)
T 2p1m_B 440 SG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMH----------HVLSGCDSLRKLEIRDCPF-GDKALLANASKL 505 (594)
T ss_dssp CS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHH----------HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGG
T ss_pred cC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHH----------HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhC
Confidence 55 44443322233346677777776665 2221110 0012367777777777753 433322233345
Q ss_pred CCccEEEEeeCCC
Q 047733 468 PSLEKLRILECPQ 480 (508)
Q Consensus 468 p~L~~L~i~~C~~ 480 (508)
++|+.|++++|+.
T Consensus 506 ~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 506 ETMRSLWMSSCSV 518 (594)
T ss_dssp GGSSEEEEESSCC
T ss_pred CCCCEEeeeCCCC
Confidence 7777777777765
No 43
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=3.5e-23 Score=217.35 Aligned_cols=402 Identities=11% Similarity=0.008 Sum_probs=253.3
Q ss_pred CCCcccEEEeecCCCCCC--CCCCC-CCC-CcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCC-
Q 047733 37 ALKVCTAISLKNSNISEL--PQVFE-CPQ-LKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP- 111 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l--~~~~~-~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~- 111 (508)
..+++++|++++|.+.+. ..+.. +++ |++|++.++. .........+..++++|++|++++|.+..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~----------~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~ 179 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS----------GFTTDGLLSIVTHCRKIKTLLMEESSFSEK 179 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE----------EEEHHHHHHHHHHCTTCSEEECTTCEEECC
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC----------CcCHHHHHHHHhhCCCCCEEECccccccCc
Confidence 357899999999977432 22222 455 9999998821 01111112233588999999999998753
Q ss_pred ----CchhhccCccccEEeccCCCCCC------ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCC---
Q 047733 112 ----LPSSLRLFQNLQTLSLDYCELGD------IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNL--- 178 (508)
Q Consensus 112 ----l~~~~~~l~~L~~L~l~~~~l~~------~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~--- 178 (508)
++.....+++|++|++++|.++. +..+.++++|++|+++++.+..+|..+..+++|++|+++.....
T Consensus 180 ~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 259 (592)
T 3ogk_B 180 DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGM 259 (592)
T ss_dssp CSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTC
T ss_pred chhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccch
Confidence 34456688999999999998762 24566789999999999999999988999999999999853322
Q ss_pred CccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCc--cCCCCCccCCCccEEEE
Q 047733 179 KVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEK--TLPRDLSFFKMLQRYSI 256 (508)
Q Consensus 179 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~i 256 (508)
...... +..+++|+.|.+..+... .++..+..+++|+.|+++++... .+...+..+++|+.|.+
T Consensus 260 ~~~~~~-l~~~~~L~~L~l~~~~~~-------------~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 260 PEKYMN-LVFPRKLCRLGLSYMGPN-------------EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp TTSSSC-CCCCTTCCEEEETTCCTT-------------TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred HHHHHH-hhccccccccCccccchh-------------HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence 112222 566777888877654221 23344556677888888776621 11122356777888777
Q ss_pred EecCccc-CCCCCCCccceeeEEecc----------Cccccc--cchhhhcccceeEEEecCCCCccccccCCcCCCCCC
Q 047733 257 LIGDQWA-WDSPSDDISGIFQLTVAS----------GANICL--NGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQ 323 (508)
Q Consensus 257 ~~~~~~~-~~~~~~~~~~l~~l~L~~----------~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 323 (508)
..+.... .......+++|+.+.+.. +..+.. .......+++|++|++ .+..+++.........+++
T Consensus 326 ~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~ 404 (592)
T 3ogk_B 326 RNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKN 404 (592)
T ss_dssp EGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCS
T ss_pred cCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCC
Confidence 6211100 011112234566666663 222221 1122345899999999 5566665433222234899
Q ss_pred CcEEEEec---CCCceeeeecccCCCCCCCcCcCcceeeccCccc-ccccccCcccccccccCCeEEEcCCCCcceecch
Q 047733 324 LKHLEVVE---NSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRN-LEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPL 399 (508)
Q Consensus 324 L~~L~l~~---~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~-l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 399 (508)
|++|++.. |+.++..+.+..... ....+++|+.|.++.|.. ++......+ ...+++|++|++++|. +.+....
T Consensus 405 L~~L~l~~~~~~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L~~n~-l~~~~~~ 481 (592)
T 3ogk_B 405 LCDFRLVLLDREERITDLPLDNGVRS-LLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLLGYVG-ESDEGLM 481 (592)
T ss_dssp CCEEEEEECSCCSCCSSCCCHHHHHH-HHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEECSCC-SSHHHHH
T ss_pred CcEEEEeecCCCccccCchHHHHHHH-HHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeeccCCC-CCHHHHH
Confidence 99999985 445443210000000 123589999999988764 332211111 1347999999999884 6553333
Q ss_pred hhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEeeC
Q 047733 400 VIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRILEC 478 (508)
Q Consensus 400 ~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~~C 478 (508)
.+...+++|++|++++|+ +.+... ......+++|++|++++|+ +++.....+...+|.++...+...
T Consensus 482 ~~~~~~~~L~~L~l~~n~-l~~~~~----------~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCC-FSERAI----------AAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHTCCTTCCEEEEESCC-CBHHHH----------HHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHhcCcccCeeeccCCC-CcHHHH----------HHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 456789999999999998 443221 1122458999999999996 877766666667788877766654
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=4.4e-20 Score=179.15 Aligned_cols=122 Identities=13% Similarity=0.257 Sum_probs=56.2
Q ss_pred cccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhcc
Q 047733 40 VCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRL 118 (508)
Q Consensus 40 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~ 118 (508)
+++.++++++.+..+|... .++|++|++.+| .+..++...|.++++|++|++++|.++.+ |..+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n------------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 100 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNN------------DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP 100 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSS------------CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCC------------cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC
Confidence 3455555555554444322 245555555542 12222222234455555555555555433 344555
Q ss_pred CccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCC
Q 047733 119 FQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCF 176 (508)
Q Consensus 119 l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~ 176 (508)
+++|++|++++|.++. |..+. ++|++|++++|.+..+|. .+..+++|++|++++|.
T Consensus 101 l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 101 LRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred cCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence 5555555555555444 33222 455555555555444432 24445555555555544
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=3.2e-20 Score=179.46 Aligned_cols=90 Identities=22% Similarity=0.315 Sum_probs=76.5
Q ss_pred CCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEecc
Q 047733 95 GMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLS 173 (508)
Q Consensus 95 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 173 (508)
...+++.|+++++.++.+|..+.++++|++|++++|.++. |..++++++|++|++++|.++.+|..+.++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4578999999999998888888889999999999998877 777888899999999998888888888888889999888
Q ss_pred CCCCCCccChh
Q 047733 174 NCFNLKVIPPN 184 (508)
Q Consensus 174 ~~~~~~~~~~~ 184 (508)
+|...+.+|..
T Consensus 159 ~n~~~~~~p~~ 169 (328)
T 4fcg_A 159 ACPELTELPEP 169 (328)
T ss_dssp EETTCCCCCSC
T ss_pred CCCCccccChh
Confidence 87767777654
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.2e-19 Score=174.06 Aligned_cols=187 Identities=17% Similarity=0.244 Sum_probs=120.7
Q ss_pred cccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhcc
Q 047733 40 VCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRL 118 (508)
Q Consensus 40 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~ 118 (508)
+++.++++++.+..+|... .+++++|++.+| .+..++...|.++++|++|++++|.++.+ |..+..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n------------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNN------------KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 98 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSS------------CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCC------------cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC
Confidence 5777788777777777533 367788888773 33334443357778888888888877765 667777
Q ss_pred CccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCc--cChhhhhcCCCCcE
Q 047733 119 FQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKV--IPPNVISSLSQLEE 194 (508)
Q Consensus 119 l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~ 194 (508)
+++|++|++++|.++. |..+. ++|++|++++|.+..++ ..+.++++|++|++++|. +.. .....+..+++|++
T Consensus 99 l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 99 LVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp CTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCE
T ss_pred CCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCE
Confidence 8888888888877766 44443 67888888887777554 346777788888887766 322 22223667777777
Q ss_pred EEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCccCCCccEEEEE
Q 047733 195 LYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSIL 257 (508)
Q Consensus 195 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~ 257 (508)
|++++|.+... +..+. ++|+.|+++++..... +..+..+++|+.|.+.
T Consensus 176 L~l~~n~l~~l-------------~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 224 (330)
T 1xku_A 176 IRIADTNITTI-------------PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224 (330)
T ss_dssp EECCSSCCCSC-------------CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred EECCCCccccC-------------Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 77777766521 11111 5677777777664443 3344556666666554
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=6.7e-20 Score=177.22 Aligned_cols=189 Identities=23% Similarity=0.304 Sum_probs=143.0
Q ss_pred CCcccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733 38 LKVCTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL 116 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 116 (508)
.++++.|++++|.+..+|... .+++|++|++.+|. +..+|..+ .++++|++|++++|.++.+|..+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~------------l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l 146 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG------------LMELPDTM-QQFAGLETLTLARNPLRALPASI 146 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC------------CCCCCSCG-GGGTTCSEEEEESCCCCCCCGGG
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC------------ccchhHHH-hccCCCCEEECCCCccccCcHHH
Confidence 367999999999998887644 88999999998833 33555544 78899999999999998889889
Q ss_pred ccCccccEEeccCCCCC-C-ccccC---------CCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhh
Q 047733 117 RLFQNLQTLSLDYCELG-D-IAIVG---------DLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNV 185 (508)
Q Consensus 117 ~~l~~L~~L~l~~~~l~-~-~~~i~---------~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~ 185 (508)
+++++|++|++++|.+. . |..++ .+++|++|++++|.++.+|..+..+++|++|++++|. +..++..
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~- 224 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA- 224 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-
Confidence 99999999999998744 3 55544 3888899999888888888888888888888888877 6677775
Q ss_pred hhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc-CccCCCCCccCCCccE
Q 047733 186 ISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED-EKTLPRDLSFFKMLQR 253 (508)
Q Consensus 186 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~ 253 (508)
+..+++|++|++++|.+... ++..++.+++|+.|++++|. .+.+|..+..+++|+.
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~------------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRN------------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCB------------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred hccCCCCCEEECcCCcchhh------------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 78888888888888776533 23456777788888887765 4444444433333333
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=4.5e-19 Score=171.87 Aligned_cols=268 Identities=15% Similarity=0.194 Sum_probs=195.5
Q ss_pred cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
...++++.|++++|.+.+++. +..+++|++|++.+|. +..++...|..+++|++|++++|.++.+|
T Consensus 49 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~ 116 (330)
T 1xku_A 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK------------ISKISPGAFAPLVKLERLYLSKNQLKELP 116 (330)
T ss_dssp SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC------------CCCBCTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc------------CCeeCHHHhcCCCCCCEEECCCCcCCccC
Confidence 356789999999999988875 4489999999999943 33333333588999999999999999888
Q ss_pred hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCch---hhHHHhccCCCCceEeccCCCCCCccChhhhhc
Q 047733 114 SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDME---KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISS 188 (508)
Q Consensus 114 ~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 188 (508)
..+. ++|++|++++|.++. + ..+.++++|++|++++|.+. ..+..+..+++|++|++++|. +..+|.. +
T Consensus 117 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~-~-- 190 (330)
T 1xku_A 117 EKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG-L-- 190 (330)
T ss_dssp SSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS-C--
T ss_pred hhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcc-c--
Confidence 7654 799999999999887 4 67899999999999999876 335668899999999999987 7778764 2
Q ss_pred CCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCC-CCccCCCccEEEEEecCcccCCCC
Q 047733 189 LSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPR-DLSFFKMLQRYSILIGDQWAWDSP 267 (508)
Q Consensus 189 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~~~~ 267 (508)
.++|++|++++|.+... .+..+..+++|+.|+++++.....+. .+..+++|+.|.+..+.....
T Consensus 191 ~~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l--- 255 (330)
T 1xku_A 191 PPSLTELHLDGNKITKV------------DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV--- 255 (330)
T ss_dssp CTTCSEEECTTSCCCEE------------CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC---
T ss_pred cccCCEEECCCCcCCcc------------CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC---
Confidence 38999999999987632 23568889999999999998666554 667889999998875542111
Q ss_pred CCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcC-----CCCCCCcEEEEecCCCceeeeecc
Q 047733 268 SDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHG-----EGFPQLKHLEVVENSNLLCVVDTV 342 (508)
Q Consensus 268 ~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~l~~i~~~~ 342 (508)
+. ....+++|++|++.++ .++.+...... ...+.|+.+++.+++ +.......
T Consensus 256 --------------------p~-~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~ 312 (330)
T 1xku_A 256 --------------------PG-GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQP 312 (330)
T ss_dssp --------------------CT-TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCG
T ss_pred --------------------Ch-hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc-ccccccCc
Confidence 11 1235688999999876 44444322211 235788999998865 33211111
Q ss_pred cCCCCCCCcCcCcceeeccCc
Q 047733 343 DRATAPTTAFPVLESLFLRDL 363 (508)
Q Consensus 343 ~~~~~~~~~~p~L~~L~l~~c 363 (508)
. ...++++|+.++++++
T Consensus 313 ~----~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 313 S----TFRCVYVRAAVQLGNY 329 (330)
T ss_dssp G----GGTTCCCGGGEEC---
T ss_pred c----ccccccceeEEEeccc
Confidence 1 2235677888888764
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=4.7e-19 Score=171.89 Aligned_cols=268 Identities=19% Similarity=0.250 Sum_probs=194.7
Q ss_pred cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
...++++.|++++|.+.++++ +..+++|++|++.+| .+..++...|.++++|++|++++|.++.+|
T Consensus 51 ~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 118 (332)
T 2ft3_A 51 EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN------------KISKIHEKAFSPLRKLQKLYISKNHLVEIP 118 (332)
T ss_dssp CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS------------CCCEECGGGSTTCTTCCEEECCSSCCCSCC
T ss_pred CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC------------ccCccCHhHhhCcCCCCEEECCCCcCCccC
Confidence 456789999999999987754 449999999999983 334444444589999999999999999888
Q ss_pred hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchh---hHHHhccCCCCceEeccCCCCCCccChhhhhc
Q 047733 114 SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEK---LVEEIGQLTHLRLLDLSNCFNLKVIPPNVISS 188 (508)
Q Consensus 114 ~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 188 (508)
..+. ++|++|++++|.++. + ..+..+++|++|++++|.++. .+..+..+ +|++|++++|. +..+|.. +
T Consensus 119 ~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~-~-- 191 (332)
T 2ft3_A 119 PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKD-L-- 191 (332)
T ss_dssp SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSS-S--
T ss_pred cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcc-c--
Confidence 7665 899999999999887 4 568999999999999998863 34455666 99999999987 7778764 2
Q ss_pred CCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCC-CCccCCCccEEEEEecCcccCCCC
Q 047733 189 LSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPR-DLSFFKMLQRYSILIGDQWAWDSP 267 (508)
Q Consensus 189 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~~~~ 267 (508)
.++|++|++++|.+.... +..+..+++|+.|+++++.....+. .+..+++|+.|.+..+....
T Consensus 192 ~~~L~~L~l~~n~i~~~~------------~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---- 255 (332)
T 2ft3_A 192 PETLNELHLDHNKIQAIE------------LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR---- 255 (332)
T ss_dssp CSSCSCCBCCSSCCCCCC------------TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB----
T ss_pred cCCCCEEECCCCcCCccC------------HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee----
Confidence 378999999999876322 2467888999999999998666655 56788999988886543211
Q ss_pred CCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcC-----CCCCCCcEEEEecCCCceeeeecc
Q 047733 268 SDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHG-----EGFPQLKHLEVVENSNLLCVVDTV 342 (508)
Q Consensus 268 ~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~l~~i~~~~ 342 (508)
.+.. ...+++|+.|++.++ .++.+...... ..++.|+.+++.+++ +.......
T Consensus 256 -------------------lp~~-l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~ 313 (332)
T 2ft3_A 256 -------------------VPAG-LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQP 313 (332)
T ss_dssp -------------------CCTT-GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCG
T ss_pred -------------------cChh-hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc-ccccccCc
Confidence 1111 236789999999876 45554432211 226789999999865 32110011
Q ss_pred cCCCCCCCcCcCcceeeccCcc
Q 047733 343 DRATAPTTAFPVLESLFLRDLR 364 (508)
Q Consensus 343 ~~~~~~~~~~p~L~~L~l~~c~ 364 (508)
. ....+++|+.+.+.++.
T Consensus 314 ~----~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 314 A----TFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp G----GGTTBCCSTTEEC----
T ss_pred c----cccccchhhhhhccccc
Confidence 1 23357888888888764
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=5.5e-20 Score=176.73 Aligned_cols=246 Identities=16% Similarity=0.210 Sum_probs=188.5
Q ss_pred CcccEEEeecCCCC---CCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCC-CCc
Q 047733 39 KVCTAISLKNSNIS---ELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLL-PLP 113 (508)
Q Consensus 39 ~~lr~L~l~~~~~~---~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~ 113 (508)
.++++|+++++.+. .++... .+++|++|++.+ .+.....+|..+ .++++|++|++++|.++ .+|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~----------~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG----------INNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIP 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEE----------ETTEESCCCGGG-GGCTTCSEEEEEEECCEEECC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCC----------CCcccccCChhH-hcCCCCCEEECcCCeeCCcCC
Confidence 67999999999996 466544 899999999983 023344566665 88999999999999997 788
Q ss_pred hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCch-hhHHHhccCC-CCceEeccCCCCCCccChhhhhcC
Q 047733 114 SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDME-KLVEEIGQLT-HLRLLDLSNCFNLKVIPPNVISSL 189 (508)
Q Consensus 114 ~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l 189 (508)
..+.++++|++|++++|.++. |..++.+++|++|++++|.++ .+|..+..+. +|++|++++|.....+|.. +..+
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l 197 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANL 197 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGC
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCC
Confidence 889999999999999999874 688999999999999999888 7888888988 9999999998744456665 6777
Q ss_pred CCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCC
Q 047733 190 SQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSD 269 (508)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~ 269 (508)
. |++|++++|.+... .+..+..+++|+.|+++++.....+..+..+++|+.|.+..+...
T Consensus 198 ~-L~~L~Ls~N~l~~~------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~------- 257 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGD------------ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY------- 257 (313)
T ss_dssp C-CSEEECCSSEEEEC------------CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE-------
T ss_pred c-ccEEECcCCcccCc------------CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc-------
Confidence 6 99999999887633 335678889999999999886554444667788888877644311
Q ss_pred CccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCc
Q 047733 270 DISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNL 335 (508)
Q Consensus 270 ~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 335 (508)
.........+++|+.|++.++. ++...+. ...+++|+.+++.+++.+
T Consensus 258 ----------------~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip~--~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 258 ----------------GTLPQGLTQLKFLHSLNVSFNN-LCGEIPQ--GGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ----------------ECCCGGGGGCTTCCEEECCSSE-EEEECCC--STTGGGSCGGGTCSSSEE
T ss_pred ----------------CcCChHHhcCcCCCEEECcCCc-ccccCCC--CccccccChHHhcCCCCc
Confidence 1112223467899999998874 4433222 267889999999887643
No 51
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=8.8e-22 Score=206.78 Aligned_cols=396 Identities=14% Similarity=0.061 Sum_probs=222.3
Q ss_pred CCcccEEEeecCCCCCC--CCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCC-CChhhhhCCCCccEEEecCCcCCC--
Q 047733 38 LKVCTAISLKNSNISEL--PQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRR-IPDKFFTGMRELRVLDFARMHLLP-- 111 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l--~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~-- 111 (508)
.+++++|++++|.+.+. ..+. .+++|++|++.+| ..... ....++.++++|++|++++|.++.
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~-----------~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~ 172 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC-----------EGFSTDGLAAIAATCRNLKELDLRESDVDDVS 172 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC-----------EEEEHHHHHHHHHHCTTCCEEECTTCEEECCC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc-----------CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc
Confidence 56899999999987432 2232 6899999999982 11111 123344689999999999998653
Q ss_pred ---CchhhccCccccEEeccCCC--CCC--c-cccCCCCCCcEEEccCC-CchhhHHHhccCCCCceEeccCCCC-----
Q 047733 112 ---LPSSLRLFQNLQTLSLDYCE--LGD--I-AIVGDLKTLVILTLRGS-DMEKLVEEIGQLTHLRLLDLSNCFN----- 177 (508)
Q Consensus 112 ---l~~~~~~l~~L~~L~l~~~~--l~~--~-~~i~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~----- 177 (508)
++.....+++|++|++++|. ++. . ..+..+++|++|++++| .+..++..+.++++|++|++..+..
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 252 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPD 252 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHH
T ss_pred hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchh
Confidence 33334477899999999986 332 2 33456799999999998 6778888888999999998765531
Q ss_pred -CCccChhhhhcCCCCcEEE-eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCcc--CCCCCccCCCccE
Q 047733 178 -LKVIPPNVISSLSQLEELY-IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKT--LPRDLSFFKMLQR 253 (508)
Q Consensus 178 -~~~~~~~~l~~l~~L~~L~-l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~~~~L~~ 253 (508)
+..++.. +..+++|+.|. +.... ...+...+..+++|+.|+++++.... +...+..+++|+.
T Consensus 253 ~~~~l~~~-l~~~~~L~~Ls~~~~~~-------------~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~ 318 (594)
T 2p1m_B 253 VYSGLSVA-LSGCKELRCLSGFWDAV-------------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQR 318 (594)
T ss_dssp HHHHHHHH-HHTCTTCCEEECCBTCC-------------GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCE
T ss_pred hHHHHHHH-HhcCCCcccccCCcccc-------------hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCE
Confidence 1112222 34555555552 11100 00111222234455555555444111 1111234455555
Q ss_pred EEEEecCccc-CCCCCCCccceeeEEecc--------Cccccc--cchhhhcccceeEEEecCCCCccccccCCcCCCCC
Q 047733 254 YSILIGDQWA-WDSPSDDISGIFQLTVAS--------GANICL--NGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFP 322 (508)
Q Consensus 254 L~i~~~~~~~-~~~~~~~~~~l~~l~L~~--------~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 322 (508)
|.+..+.... .......+++|+.+.+.. +..+.. .......+++|++|.+ +|..+++.........++
T Consensus 319 L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~ 397 (594)
T 2p1m_B 319 LWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRP 397 (594)
T ss_dssp EEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCT
T ss_pred EeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCC
Confidence 5554331000 000001122343444421 111110 1112234789999965 555666543322223589
Q ss_pred CCcEEEEe-----cCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceec
Q 047733 323 QLKHLEVV-----ENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVF 397 (508)
Q Consensus 323 ~L~~L~l~-----~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 397 (508)
+|++|++. +|..++....+..... ....+++|+.|++.+ .+++.....+ ...+++|+.|++++|. +.+..
T Consensus 398 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~-l~~~~~~L~~L~L~~--~l~~~~~~~l-~~~~~~L~~L~L~~~~-i~~~~ 472 (594)
T 2p1m_B 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGA-IVEHCKDLRRLSLSG--LLTDKVFEYI-GTYAKKMEMLSVAFAG-DSDLG 472 (594)
T ss_dssp TCCEEEEEESSTTCCCTTTCCCTHHHHHH-HHHHCTTCCEEECCS--SCCHHHHHHH-HHHCTTCCEEEEESCC-SSHHH
T ss_pred CcceeEeecccCCCcccccCCchhhHHHH-HHhhCCCccEEeecC--cccHHHHHHH-HHhchhccEeeccCCC-CcHHH
Confidence 99999999 5666553211000000 123578999999966 4443221111 1237899999999985 55443
Q ss_pred chhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEe
Q 047733 398 PLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRIL 476 (508)
Q Consensus 398 ~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~ 476 (508)
...+...+++|++|++++|+. .+... ......+++|++|++++|+. +.-....+...+|.|+...+.
T Consensus 473 ~~~l~~~~~~L~~L~L~~n~~-~~~~~----------~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 473 MHHVLSGCDSLRKLEIRDCPF-GDKAL----------LANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCSC-CHHHH----------HHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEEC
T ss_pred HHHHHhcCCCcCEEECcCCCC-cHHHH----------HHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEec
Confidence 333446789999999999985 32221 11234579999999999965 333333333455777554444
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=2.5e-19 Score=172.14 Aligned_cols=171 Identities=16% Similarity=0.213 Sum_probs=133.9
Q ss_pred CCCcEEEcCCCCCCCCCcccCCCCCC--CCChhhhhCCCCccEEEecC-CcCC-CCchhhccCccccEEeccCCCCCC--
Q 047733 61 PQLKYFHIANDPSRRIPVHIANDPSR--RIPDKFFTGMRELRVLDFAR-MHLL-PLPSSLRLFQNLQTLSLDYCELGD-- 134 (508)
Q Consensus 61 ~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~l~~~~~~l~~L~~L~l~~~~l~~-- 134 (508)
.+++.|++.+| ...+ .+|..+ .++++|++|++++ |.+. .+|..++++++|++|++++|.++.
T Consensus 50 ~~l~~L~L~~~-----------~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGL-----------NLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECC-----------CCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred ceEEEEECCCC-----------CccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC
Confidence 57899999883 3333 456655 8899999999995 7776 688889999999999999999874
Q ss_pred ccccCCCCCCcEEEccCCCch-hhHHHhccCCCCceEeccCCCCCCccChhhhhcCC-CCcEEEeecCCCccccccCcCC
Q 047733 135 IAIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLS-QLEELYIGESPIMWGKVGGVDG 212 (508)
Q Consensus 135 ~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~ 212 (508)
|..++++++|++|++++|.+. .+|..+..+++|++|++++|.....+|.. +..++ +|++|++++|.+.+..
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~------ 190 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKI------ 190 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEEC------
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccC------
Confidence 688999999999999999888 77888899999999999998833467766 78887 8999999998776332
Q ss_pred CCcccchhhccCCCCccEEEEecccCc-cCCCCCccCCCccEEEEE
Q 047733 213 EGRNASLDELNNLSKLTSLEILIEDEK-TLPRDLSFFKMLQRYSIL 257 (508)
Q Consensus 213 ~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~i~ 257 (508)
+..+..++ |+.|+++++... ..+..+..+++|+.|.+.
T Consensus 191 ------~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 229 (313)
T 1ogq_A 191 ------PPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp ------CGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred ------ChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence 34556665 999999888743 344555667777777664
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=2.2e-22 Score=204.57 Aligned_cols=393 Identities=15% Similarity=0.094 Sum_probs=227.9
Q ss_pred CCcccEEEeecCCCCCCC--C-CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCC-Cc
Q 047733 38 LKVCTAISLKNSNISELP--Q-VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP-LP 113 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~--~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~ 113 (508)
++++++|+++++.+.+.+ . +..+++|++|++.+|.+... ....++. .+..+++|++|++++|.++. .+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-------~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~ 73 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA-------RCKDISS-ALRVNPALAELNLRSNELGDVGV 73 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH-------HHHHHHH-HHHTCTTCCEEECTTCCCHHHHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH-------HHHHHHH-HHHhCCCcCEEeCCCCcCChHHH
Confidence 456899999999885433 2 22789999999998322110 0002233 34778999999999998863 22
Q ss_pred -hhhccCc----cccEEeccCCCCCC------ccccCCCCCCcEEEccCCCchhh-----HHHh-ccCCCCceEeccCCC
Q 047733 114 -SSLRLFQ----NLQTLSLDYCELGD------IAIVGDLKTLVILTLRGSDMEKL-----VEEI-GQLTHLRLLDLSNCF 176 (508)
Q Consensus 114 -~~~~~l~----~L~~L~l~~~~l~~------~~~i~~l~~L~~L~l~~~~i~~l-----p~~~-~~l~~L~~L~l~~~~ 176 (508)
.....+. +|++|++++|.+++ +..+..+++|++|++++|.+... ...+ ...++|++|++++|.
T Consensus 74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 2233455 69999999998773 46788899999999999987632 2222 235689999999987
Q ss_pred CCCccC----hhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhcc-CCCCccEEEEecccCcc-----CCCCCc
Q 047733 177 NLKVIP----PNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELN-NLSKLTSLEILIEDEKT-----LPRDLS 246 (508)
Q Consensus 177 ~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~-----~~~~l~ 246 (508)
+.... ...+..+++|++|++++|.+..... ..+...+. ..++|+.|+++++.... ++..+.
T Consensus 154 -l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~--------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 224 (461)
T 1z7x_W 154 -LSAASCEPLASVLRAKPDFKELTVSNNDINEAGV--------RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224 (461)
T ss_dssp -CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH--------HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH--------HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH
Confidence 54422 1225678999999999887652211 11222222 35689999999887544 344556
Q ss_pred cCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCcccccc---CCcCCCCCC
Q 047733 247 FFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLY---GSHGEGFPQ 323 (508)
Q Consensus 247 ~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~ 323 (508)
.+++|+.|.+..+.... .............+++|++|++.+| .++.... ......+++
T Consensus 225 ~~~~L~~L~Ls~n~l~~------------------~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~ 285 (461)
T 1z7x_W 225 SKASLRELALGSNKLGD------------------VGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKES 285 (461)
T ss_dssp HCTTCCEEECCSSBCHH------------------HHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTT
T ss_pred hCCCccEEeccCCcCCh------------------HHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCC
Confidence 67888887775432100 0000000111123678888888877 4443210 001134788
Q ss_pred CcEEEEecCCCceeeee-cccCCCCCCCcCcCcceeeccCcccccccccC--cccccccccCCeEEEcCCCCcceecchh
Q 047733 324 LKHLEVVENSNLLCVVD-TVDRATAPTTAFPVLESLFLRDLRNLEKICRG--PLAAESFCQLRDMRVNGCDKLKNVFPLV 400 (508)
Q Consensus 324 L~~L~l~~~~~l~~i~~-~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~--~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 400 (508)
|++|+++++. ++.... ..... -....++|++|++++|. ++..... +.....+++|++|+++++ .+.+.....
T Consensus 286 L~~L~Ls~n~-i~~~~~~~l~~~--l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~ 360 (461)
T 1z7x_W 286 LKELSLAGNE-LGDEGARLLCET--LLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRE 360 (461)
T ss_dssp CCEEECTTCC-CHHHHHHHHHHH--HTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHH
T ss_pred cceEECCCCC-CchHHHHHHHHH--hccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHH
Confidence 8888888753 321100 00000 01123688888888875 3322110 011234588888888887 565543322
Q ss_pred hhh----ccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCcccc----ccCCccE
Q 047733 401 IGR----GLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHF----EFPSLEK 472 (508)
Q Consensus 401 ~~~----~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~----~~p~L~~ 472 (508)
+.. ..++|++|++++|. +.+...... +..+..+++|++|++++| .+++.....+.. ..+.|+.
T Consensus 361 l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l-------~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~ 431 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADCD-VSDSSCSSL-------AATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQ 431 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSC-CCHHHHHHH-------HHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCE
T ss_pred HHHHHcCCCCceEEEECCCCC-CChhhHHHH-------HHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhh
Confidence 222 15688888888874 332100000 123345788888888887 455443322221 2235888
Q ss_pred EEEeeCCC
Q 047733 473 LRILECPQ 480 (508)
Q Consensus 473 L~i~~C~~ 480 (508)
|++.++.-
T Consensus 432 L~~~~~~~ 439 (461)
T 1z7x_W 432 LVLYDIYW 439 (461)
T ss_dssp EECTTCCC
T ss_pred eeeccccc
Confidence 87776653
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=1.3e-17 Score=173.56 Aligned_cols=255 Identities=20% Similarity=0.155 Sum_probs=163.2
Q ss_pred CcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhcc
Q 047733 39 KVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRL 118 (508)
Q Consensus 39 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~ 118 (508)
.+++.|+++++.+..+|.... ++|++|++.+|.+ ..+|. .+++|++|++++|.++.+|. .
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l------------~~lp~----~l~~L~~L~Ls~N~l~~lp~---~ 99 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL------------TSLPA----LPPELRTLEVSGNQLTSLPV---L 99 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCC------------SCCCC----CCTTCCEEEECSCCCSCCCC---C
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCC------------CCCCC----cCCCCCEEEcCCCcCCcCCC---C
Confidence 358889999988888876443 7888888888433 33443 46788888888888888776 6
Q ss_pred CccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733 119 FQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197 (508)
Q Consensus 119 l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 197 (508)
+++|++|++++|.++. +. .+.+|++|++++|.++.+|.. +++|++|++++|. +..++. .+++|+.|++
T Consensus 100 l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L 168 (622)
T 3g06_A 100 PPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWA 168 (622)
T ss_dssp CTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEEC
T ss_pred CCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEEC
Confidence 7788888888888777 44 567888888888888777643 4788888888876 666654 3467888888
Q ss_pred ecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeE
Q 047733 198 GESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQL 277 (508)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l 277 (508)
.+|.++. ++ ..+++|+.|++++|....+|.. +++
T Consensus 169 ~~N~l~~-------------l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~--------------------------- 202 (622)
T 3g06_A 169 YNNQLTS-------------LP---MLPSGLQELSVSDNQLASLPTL---PSE--------------------------- 202 (622)
T ss_dssp CSSCCSC-------------CC---CCCTTCCEEECCSSCCSCCCCC---CTT---------------------------
T ss_pred CCCCCCC-------------Cc---ccCCCCcEEECCCCCCCCCCCc---cch---------------------------
Confidence 8776651 11 3346777777777765544432 233
Q ss_pred EeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcce
Q 047733 278 TVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLES 357 (508)
Q Consensus 278 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~ 357 (508)
|+.|++.++ .++.+. ..+++|++|+++++ .++.+ + ..+++|+.
T Consensus 203 --------------------L~~L~L~~N-~l~~l~-----~~~~~L~~L~Ls~N-~L~~l---------p-~~l~~L~~ 245 (622)
T 3g06_A 203 --------------------LYKLWAYNN-RLTSLP-----ALPSGLKELIVSGN-RLTSL---------P-VLPSELKE 245 (622)
T ss_dssp --------------------CCEEECCSS-CCSSCC-----CCCTTCCEEECCSS-CCSCC---------C-CCCTTCCE
T ss_pred --------------------hhEEECcCC-cccccC-----CCCCCCCEEEccCC-ccCcC---------C-CCCCcCcE
Confidence 444444333 222211 12355666666553 33322 1 23456666
Q ss_pred eeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeecccc
Q 047733 358 LFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQ 417 (508)
Q Consensus 358 L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 417 (508)
|+++++ .++.++. .+++|+.|++++| .++.+|. .+..+++|+.|++++++
T Consensus 246 L~Ls~N-~L~~lp~------~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 246 LMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EECCSS-CCSCCCC------CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCC
T ss_pred EECCCC-CCCcCCc------ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCC
Confidence 666664 3443321 4466777777776 5666643 24667777777777765
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=8.1e-19 Score=171.71 Aligned_cols=147 Identities=22% Similarity=0.293 Sum_probs=75.2
Q ss_pred EEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhccCccc
Q 047733 44 ISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLFQNL 122 (508)
Q Consensus 44 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L 122 (508)
.+.+++.+..+|... .++|++|++.+| .+..++...|.++++|++|++++|.++.+ +..+.++++|
T Consensus 36 c~~~~~~l~~iP~~~-~~~L~~L~l~~n------------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL-TEAVKSLDLSNN------------RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp EECCSTTCSSCCTTC-CTTCCEEECTTS------------CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred eeCCCCCcccccccc-cccCcEEECCCC------------cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence 555555555555422 235566666552 22233332235555566666666555543 2345555556
Q ss_pred cEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHH--HhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEee
Q 047733 123 QTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVE--EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG 198 (508)
Q Consensus 123 ~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 198 (508)
++|++++|.++. + ..++++++|++|++++|.++.+|. .+..+++|++|++++|..+..++...+..+++|++|+++
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 666665555554 3 225555555555555555555543 344555555555555533444443334555555555555
Q ss_pred cCCCc
Q 047733 199 ESPIM 203 (508)
Q Consensus 199 ~~~~~ 203 (508)
+|.+.
T Consensus 183 ~n~l~ 187 (353)
T 2z80_A 183 ASDLQ 187 (353)
T ss_dssp ETTCC
T ss_pred CCCcC
Confidence 55443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=2.5e-18 Score=164.72 Aligned_cols=190 Identities=19% Similarity=0.223 Sum_probs=117.8
Q ss_pred cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC---chhhcc
Q 047733 42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL---PSSLRL 118 (508)
Q Consensus 42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---~~~~~~ 118 (508)
+.++..++.+..+|... .++|++|++.+ +.+..+|..+|.++++|++|++++|.++.. +..+..
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~------------n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 76 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELES------------NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCS------------SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCC------------CccCccCHhHhhccccCCEEECCCCccCcccCccccccc
Confidence 35666666666666522 35777777776 333345555556777777777777776643 455666
Q ss_pred CccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHH--HhccCCCCceEeccCCCCCCccChhhhhcCCCCcEE
Q 047733 119 FQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVE--EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL 195 (508)
Q Consensus 119 l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 195 (508)
+++|++|++++|.++. +..+..+++|++|++++|.++.++. .+..+++|++|++++|. +...+...+..+++|++|
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEE
T ss_pred ccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEE
Confidence 7777777777777666 5567777777777777777765553 46677777777777766 444443335677777777
Q ss_pred EeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCccCCCccEEEE
Q 047733 196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSI 256 (508)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i 256 (508)
++++|.+... ..+..+..+++|+.|+++++..... +..+..+++|+.|.+
T Consensus 156 ~l~~n~l~~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 156 KMAGNSFQEN-----------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp ECTTCEEGGG-----------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ECCCCccccc-----------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 7777665421 1224456667777777776664433 333444444444443
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=6.8e-19 Score=166.86 Aligned_cols=153 Identities=24% Similarity=0.393 Sum_probs=72.8
Q ss_pred CCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCc-CCCC-c
Q 047733 38 LKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMH-LLPL-P 113 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l-~ 113 (508)
++++++|++++|.+.+++. +..+++|++|++.+|. +..++...|..+++|++|++++|. ++.+ +
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~------------l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV------------LARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC------------CCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc------------cceeCHhhcCCccCCCEEeCCCCCCccccCH
Confidence 4455555555555544432 2245555555555421 122211223445555555555554 4443 3
Q ss_pred hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCC
Q 047733 114 SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLS 190 (508)
Q Consensus 114 ~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 190 (508)
..+..+++|++|++++|.++. +..+.++++|++|++++|.++.++.. +..+++|++|++++|. +..++...+..++
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLH 177 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCcc
Confidence 445555555555555555444 23445555555555555555444322 4445555555555544 4444443344555
Q ss_pred CCcEEEeecCCCc
Q 047733 191 QLEELYIGESPIM 203 (508)
Q Consensus 191 ~L~~L~l~~~~~~ 203 (508)
+|++|++++|.+.
T Consensus 178 ~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 178 SLDRLLLHQNRVA 190 (285)
T ss_dssp TCCEEECCSSCCC
T ss_pred ccCEEECCCCccc
Confidence 5555555555443
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=7.6e-18 Score=169.90 Aligned_cols=241 Identities=19% Similarity=0.262 Sum_probs=179.2
Q ss_pred ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccC
Q 047733 41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLF 119 (508)
Q Consensus 41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l 119 (508)
.+.++..+..+..+|... .++++.|++.+| .+..++...|.++++|++|++++|.++.++ ..|..+
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n------------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l 111 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHEN------------QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL 111 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSC------------CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTC
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCC------------cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCC
Confidence 457777777778887643 378899999883 334444444688999999999999988655 678889
Q ss_pred ccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733 120 QNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196 (508)
Q Consensus 120 ~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 196 (508)
++|++|++++|+++. + ..+..+++|++|++++|.++.++. .+.++++|++|++++|..+..++...+..+++|++|+
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 999999999998887 4 568889999999999998887764 5778899999999987778888876678899999999
Q ss_pred eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCccCCCccEEEEEecCcccCCCCCCCcccee
Q 047733 197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIF 275 (508)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~ 275 (508)
+++|.++ .+..+..+++|+.|++++|....+ +..+..+++|+.|.+..+...
T Consensus 192 L~~n~l~--------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~------------- 244 (440)
T 3zyj_A 192 LAMCNLR--------------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ------------- 244 (440)
T ss_dssp CTTSCCS--------------SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-------------
T ss_pred CCCCcCc--------------cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee-------------
Confidence 9988776 123477888999999998885555 556677888888877533211
Q ss_pred eEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCC
Q 047733 276 QLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENS 333 (508)
Q Consensus 276 ~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 333 (508)
.........+++|++|++.++ .++.+.... ...+++|+.|++.+++
T Consensus 245 ----------~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 245 ----------VIERNAFDNLQSLVEINLAHN-NLTLLPHDL-FTPLHHLERIHLHHNP 290 (440)
T ss_dssp ----------EECTTSSTTCTTCCEEECTTS-CCCCCCTTT-TSSCTTCCEEECCSSC
T ss_pred ----------EEChhhhcCCCCCCEEECCCC-CCCccChhH-hccccCCCEEEcCCCC
Confidence 111222335788999999876 455443322 3568899999998854
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=4.8e-18 Score=166.23 Aligned_cols=181 Identities=20% Similarity=0.277 Sum_probs=146.3
Q ss_pred cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
...+++++|++++|.+.+++. +..+++|++|++.+| .+..++...|.++++|++|++++|.++.++
T Consensus 49 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN------------GINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS------------CCCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC------------ccCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence 456789999999999988776 449999999999984 333444444588999999999999999888
Q ss_pred hh-hccCccccEEeccCCCCCC-cc--ccCCCCCCcEEEccCC-CchhhH-HHhccCCCCceEeccCCCCCCccChhhhh
Q 047733 114 SS-LRLFQNLQTLSLDYCELGD-IA--IVGDLKTLVILTLRGS-DMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVIS 187 (508)
Q Consensus 114 ~~-~~~l~~L~~L~l~~~~l~~-~~--~i~~l~~L~~L~l~~~-~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 187 (508)
.. ++++++|++|++++|+++. +. .+..+++|++|++++| .+..++ ..+..+++|++|++++|. +..+.+..+.
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~ 195 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLK 195 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTT
T ss_pred HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHh
Confidence 65 8899999999999999887 43 6889999999999998 577664 568899999999999988 5555443488
Q ss_pred cCCCCcEEEeecCCCccccccCcCCCCcccchh-hccCCCCccEEEEecccCccCC
Q 047733 188 SLSQLEELYIGESPIMWGKVGGVDGEGRNASLD-ELNNLSKLTSLEILIEDEKTLP 242 (508)
Q Consensus 188 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~ 242 (508)
.+++|++|++++|.+.. ... .+..+++|+.|+++++.....+
T Consensus 196 ~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 196 SIQNVSHLILHMKQHIL-------------LLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp TCSEEEEEEEECSCSTT-------------HHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred ccccCCeecCCCCcccc-------------chhhhhhhcccccEEECCCCcccccc
Confidence 99999999999988641 222 2445789999999998755443
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=6.7e-18 Score=170.92 Aligned_cols=241 Identities=20% Similarity=0.226 Sum_probs=175.4
Q ss_pred ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccC
Q 047733 41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLF 119 (508)
Q Consensus 41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l 119 (508)
.+.++..+..+..+|... .+++++|++.+| .+..++...|.++++|++|++++|.++.++ ..|..+
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n------------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 122 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMEN------------NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL 122 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSS------------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCC------------cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCc
Confidence 456777777777777533 368899999883 333343344588899999999999888654 678889
Q ss_pred ccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733 120 QNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196 (508)
Q Consensus 120 ~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 196 (508)
++|++|++++|.++. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|..+..++...+..+++|++|+
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 999999999998887 4 568888999999999998887764 5778899999999987778888876678889999999
Q ss_pred eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCccCCCccEEEEEecCcccCCCCCCCcccee
Q 047733 197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIF 275 (508)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~ 275 (508)
+++|.+.. +..+..+++|+.|++++|..... +..+..+++|+.|.+..+...
T Consensus 203 L~~n~l~~--------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~------------- 255 (452)
T 3zyi_A 203 LGMCNIKD--------------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS------------- 255 (452)
T ss_dssp CTTSCCSS--------------CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC-------------
T ss_pred CCCCcccc--------------cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc-------------
Confidence 99887761 23467788899999998885555 445677888888776533211
Q ss_pred eEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCC
Q 047733 276 QLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENS 333 (508)
Q Consensus 276 ~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 333 (508)
.........+++|+.|++.++ .++.+.... ...+++|++|++.+++
T Consensus 256 ----------~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 256 ----------LIERNAFDGLASLVELNLAHN-NLSSLPHDL-FTPLRYLVELHLHHNP 301 (452)
T ss_dssp ----------EECTTTTTTCTTCCEEECCSS-CCSCCCTTS-STTCTTCCEEECCSSC
T ss_pred ----------eECHHHhcCCCCCCEEECCCC-cCCccChHH-hccccCCCEEEccCCC
Confidence 111122335688888888776 444443322 3567888999888754
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=1.8e-17 Score=158.73 Aligned_cols=190 Identities=17% Similarity=0.250 Sum_probs=162.4
Q ss_pred CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733 37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL 116 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 116 (508)
.++++++|++.++.+..++.+..+++|++|++++| .+..++. +..+++|++|++++|.++.++ .+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n------------~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~ 103 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN------------QITDLAP--LKNLTKITELELSGNPLKNVS-AI 103 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS------------CCCCCGG--GTTCCSCCEEECCSCCCSCCG-GG
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCC------------cCCCChh--HccCCCCCEEEccCCcCCCch-hh
Confidence 36789999999999998987779999999999994 3344444 588999999999999998876 58
Q ss_pred ccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733 117 RLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196 (508)
Q Consensus 117 ~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 196 (508)
..+++|++|++++|.++....+..+++|++|++++|.+..++. +..+++|++|++++|. +..++. +..+++|++|+
T Consensus 104 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~ 179 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLK 179 (308)
T ss_dssp TTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEE
T ss_pred cCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEE
Confidence 8999999999999999885559999999999999999987765 8899999999999987 777766 78999999999
Q ss_pred eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecC
Q 047733 197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGD 260 (508)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~ 260 (508)
+++|.+.. +..+..+++|+.|++++|.....+. +..+++|+.|.+..+.
T Consensus 180 l~~n~l~~--------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 180 ADDNKISD--------------ISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCSSCCCC--------------CGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred CCCCccCc--------------ChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 99998762 1237888999999999998776664 6789999999998654
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=5e-17 Score=169.23 Aligned_cols=116 Identities=20% Similarity=0.190 Sum_probs=84.1
Q ss_pred ccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcc
Q 047733 295 LKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPL 374 (508)
Q Consensus 295 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~ 374 (508)
+++|+.|++.++ .++.+. ..+++|+.|++.++ .++.+. ..+++|+.|+++++ .++.++
T Consensus 180 ~~~L~~L~Ls~N-~l~~l~-----~~~~~L~~L~L~~N-~l~~l~----------~~~~~L~~L~Ls~N-~L~~lp---- 237 (622)
T 3g06_A 180 PSGLQELSVSDN-QLASLP-----TLPSELYKLWAYNN-RLTSLP----------ALPSGLKELIVSGN-RLTSLP---- 237 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSSCC----------CCCTTCCEEECCSS-CCSCCC----
T ss_pred CCCCcEEECCCC-CCCCCC-----CccchhhEEECcCC-cccccC----------CCCCCCCEEEccCC-ccCcCC----
Confidence 567788888765 344332 23589999999885 454332 23589999999986 455543
Q ss_pred cccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCc
Q 047733 375 AAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLP 453 (508)
Q Consensus 375 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 453 (508)
..+++|++|+++++ .++.+|. .+++|+.|++++| .+..+ +..+..+++|+.|++++++
T Consensus 238 --~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~l------------p~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 238 --VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRL------------PESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp --CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSC------------CGGGGGSCTTCEEECCSCC
T ss_pred --CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcC------------CHHHhhccccCEEEecCCC
Confidence 45689999999997 7887764 5789999999987 45544 3346678999999999985
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=2.3e-20 Score=189.71 Aligned_cols=362 Identities=18% Similarity=0.126 Sum_probs=230.5
Q ss_pred CCCcccEEEeecCCCCC-----CCCC-CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCC----CccEEEecC
Q 047733 37 ALKVCTAISLKNSNISE-----LPQV-FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMR----ELRVLDFAR 106 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~L~~L~l~~ 106 (508)
.++++++|++++|.+.+ ++.. ..+++|++|++++|.+ ....+..++..++ +|++|++++
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-----------~~~~~~~l~~~l~~~~~~L~~L~L~~ 94 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-----------GDVGVHCVLQGLQTPSCKIQKLSLQN 94 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC-----------HHHHHHHHHHTTCSTTCCCCEEECTT
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC-----------ChHHHHHHHHHHhhCCCceeEEEccC
Confidence 35789999999999863 3332 2789999999998322 1222334445566 799999999
Q ss_pred CcCC-----CCchhhccCccccEEeccCCCCCC--cccc-----CCCCCCcEEEccCCCch-----hhHHHhccCCCCce
Q 047733 107 MHLL-----PLPSSLRLFQNLQTLSLDYCELGD--IAIV-----GDLKTLVILTLRGSDME-----KLVEEIGQLTHLRL 169 (508)
Q Consensus 107 ~~~~-----~l~~~~~~l~~L~~L~l~~~~l~~--~~~i-----~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~ 169 (508)
|.++ .++..+..+++|++|++++|.+++ +..+ ....+|++|++++|.++ .++..+..+++|++
T Consensus 95 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 174 (461)
T 1z7x_W 95 CCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174 (461)
T ss_dssp SCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCE
T ss_pred CCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCE
Confidence 9987 357888999999999999999875 3322 23568999999999876 45777888999999
Q ss_pred EeccCCCCCCccChhhhh-----cCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC---
Q 047733 170 LDLSNCFNLKVIPPNVIS-----SLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL--- 241 (508)
Q Consensus 170 L~l~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--- 241 (508)
|++++|. +.......+. ..++|++|++++|.++.. ....+...+..+++|+.|+++++.....
T Consensus 175 L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 175 LTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSD--------NCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp EECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT--------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred EECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHH--------HHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 9999987 5443222122 366999999999987622 1122456677889999999998874322
Q ss_pred ---CCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccC---
Q 047733 242 ---PRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYG--- 315 (508)
Q Consensus 242 ---~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--- 315 (508)
+.....+++|+.|.+..+.... ............+++|++|++.++. +++....
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~-------------------~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~ 305 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITA-------------------KGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLC 305 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCH-------------------HHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEECcCCCCCH-------------------HHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHH
Confidence 1112346778877765432100 0000011123357899999998873 4332111
Q ss_pred -CcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccc---cccccCCeEEEcCCC
Q 047733 316 -SHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAA---ESFCQLRDMRVNGCD 391 (508)
Q Consensus 316 -~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~---~~~~~L~~L~l~~c~ 391 (508)
......++|++|++++|. ++... ...... ....+++|+.|+++++ .+++.....+.. ...++|++|++++|
T Consensus 306 ~~l~~~~~~L~~L~L~~n~-l~~~~-~~~l~~-~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n- 380 (461)
T 1z7x_W 306 ETLLEPGCQLESLWVKSCS-FTAAC-CSHFSS-VLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC- 380 (461)
T ss_dssp HHHTSTTCCCCEEECTTSC-CBGGG-HHHHHH-HHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-
T ss_pred HHhccCCccceeeEcCCCC-CchHH-HHHHHH-HHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-
Confidence 111234799999999975 33210 000000 1234689999999997 454432111110 12579999999998
Q ss_pred Ccce-----ecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCce-eeccccCeeEcCCCc
Q 047733 392 KLKN-----VFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQV-IELTQLTILELCYLP 453 (508)
Q Consensus 392 ~l~~-----l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~ 453 (508)
.+++ ++ .....+++|++|++++++ +.+....... ..+ ...++|+.|.+.++.
T Consensus 381 ~i~~~~~~~l~--~~l~~~~~L~~L~l~~N~-i~~~~~~~l~-------~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 381 DVSDSSCSSLA--ATLLANHSLRELDLSNNC-LGDAGILQLV-------ESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp CCCHHHHHHHH--HHHHHCCCCCEEECCSSS-CCHHHHHHHH-------HHHTSTTCCCCEEECTTCC
T ss_pred CCChhhHHHHH--HHHHhCCCccEEECCCCC-CCHHHHHHHH-------HHhccCCcchhheeecccc
Confidence 5653 22 234678999999999985 3332111000 001 123468888887764
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=5.2e-17 Score=153.82 Aligned_cols=190 Identities=17% Similarity=0.201 Sum_probs=141.9
Q ss_pred ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhccC
Q 047733 41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLF 119 (508)
Q Consensus 41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l 119 (508)
.+.++..++.+..+|.. ..++|+.|++.+| .+..++...|..+++|++|++++|.++.+ +..+..+
T Consensus 13 ~~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n------------~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 79 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVG-IPAASQRIFLHGN------------RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79 (285)
T ss_dssp SCEEECCSSCCSSCCTT-CCTTCSEEECTTS------------CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CeEEEcCcCCcccCCcC-CCCCceEEEeeCC------------cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc
Confidence 46788888888888753 3578999999883 34445544458899999999999998865 6778899
Q ss_pred ccccEEeccCCC-CCC--ccccCCCCCCcEEEccCCCchhh-HHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEE
Q 047733 120 QNLQTLSLDYCE-LGD--IAIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL 195 (508)
Q Consensus 120 ~~L~~L~l~~~~-l~~--~~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 195 (508)
++|++|++++|. ++. +..+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..++...+..+++|++|
T Consensus 80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEE
Confidence 999999999997 776 47788899999999999988866 4557788999999999987 667776557788999999
Q ss_pred EeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCccCCCccEEEE
Q 047733 196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSI 256 (508)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i 256 (508)
++++|.++... ...+..+++|+.|+++++..... +..+..+++|+.|.+
T Consensus 159 ~l~~n~l~~~~------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 159 FLHGNRISSVP------------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp ECCSSCCCEEC------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred ECCCCcccccC------------HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 99988775221 12467778888888888764433 344444444444433
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=3e-17 Score=155.63 Aligned_cols=196 Identities=19% Similarity=0.211 Sum_probs=163.3
Q ss_pred CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733 37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL 116 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 116 (508)
.+++++.+++.++.+..+|... .++++.|++.+| .+..++...|..+++|++|++++|.++.++..
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 73 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL-PKDTTILHLSEN------------LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD- 73 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTS------------CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-
T ss_pred ccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCC------------cCCccCHHHhhcCCCCCEEECCCCccCcccCC-
Confidence 4677999999999999888654 378999999983 34444444468999999999999999887764
Q ss_pred ccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCCCCcE
Q 047733 117 RLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEE 194 (508)
Q Consensus 117 ~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 194 (508)
+.+++|++|++++|.++. |..+..+++|++|++++|.++.+| ..+..+++|++|++++|. +..++...+..+++|+.
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCE
Confidence 789999999999999888 778889999999999999999887 457899999999999987 77888766789999999
Q ss_pred EEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEec
Q 047733 195 LYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIG 259 (508)
Q Consensus 195 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~ 259 (508)
|++++|.++... ...+..+++|+.|++++|....+|..+....+|+.+.+.+.
T Consensus 153 L~L~~N~l~~l~------------~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 153 LSLANNNLTELP------------AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp EECTTSCCSCCC------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred EECCCCcCCccC------------HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 999999876221 13457789999999999998899988878888888887643
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=1.8e-18 Score=166.55 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=73.4
Q ss_pred CChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCC
Q 047733 88 IPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTH 166 (508)
Q Consensus 88 ~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 166 (508)
.+..++..+++|++|++++|.++.++ ..+..+++|++|++++|.++....+..+++|++|++++|.++.++ ..++
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~ 100 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPS 100 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----ECTT
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CCCC
Confidence 34455566677888888888877654 567778888888888887766323777788888888887776554 3367
Q ss_pred CceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCc
Q 047733 167 LRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIM 203 (508)
Q Consensus 167 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 203 (508)
|++|++++|. +..++. ..+++|++|++++|.+.
T Consensus 101 L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 101 IETLHAANNN-ISRVSC---SRGQGKKNIYLANNKIT 133 (317)
T ss_dssp CCEEECCSSC-CSEEEE---CCCSSCEEEECCSSCCC
T ss_pred cCEEECCCCc-cCCcCc---cccCCCCEEECCCCCCC
Confidence 7777777766 555543 23566777777666654
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=2.4e-17 Score=157.89 Aligned_cols=185 Identities=17% Similarity=0.202 Sum_probs=148.8
Q ss_pred cCCCcccEEEeecCCCCCCCCC--CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 36 DALKVCTAISLKNSNISELPQV--FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
..++++++|++++|.+..++.. ..+++|++|++.+|.+..+ ...+..+ ..+++|++|++++|.+..+|
T Consensus 25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---------~~~~~~~-~~~~~L~~L~Ls~n~i~~l~ 94 (306)
T 2z66_A 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK---------GCCSQSD-FGTTSLKYLDLSFNGVITMS 94 (306)
T ss_dssp CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE---------EEEEHHH-HSCSCCCEEECCSCSEEEEE
T ss_pred CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc---------cCccccc-ccccccCEEECCCCccccCh
Confidence 4567899999999999988863 4899999999998433211 1123444 67999999999999999999
Q ss_pred hhhccCccccEEeccCCCCCC-c--cccCCCCCCcEEEccCCCchhh-HHHhccCCCCceEeccCCCCCC-ccChhhhhc
Q 047733 114 SSLRLFQNLQTLSLDYCELGD-I--AIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLRLLDLSNCFNLK-VIPPNVISS 188 (508)
Q Consensus 114 ~~~~~l~~L~~L~l~~~~l~~-~--~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~ 188 (508)
..+..+++|++|++++|.++. + ..+..+++|++|++++|.+... +..+..+++|++|++++|.... ..+.. +..
T Consensus 95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~ 173 (306)
T 2z66_A 95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTE 173 (306)
T ss_dssp EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CTT
T ss_pred hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-Hhh
Confidence 889999999999999999776 3 5789999999999999988744 4567889999999999987333 25554 789
Q ss_pred CCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCC
Q 047733 189 LSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPR 243 (508)
Q Consensus 189 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 243 (508)
+++|++|++++|.+... .+..+..+++|+.|++++|.....+.
T Consensus 174 l~~L~~L~Ls~n~l~~~------------~~~~~~~l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 174 LRNLTFLDLSQCQLEQL------------SPTAFNSLSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp CTTCCEEECTTSCCCEE------------CTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred CcCCCEEECCCCCcCCc------------CHHHhcCCCCCCEEECCCCccCccCh
Confidence 99999999999987632 23567888999999999987555443
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=8.7e-17 Score=150.99 Aligned_cols=195 Identities=20% Similarity=0.314 Sum_probs=143.6
Q ss_pred CcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh-hc
Q 047733 39 KVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS-LR 117 (508)
Q Consensus 39 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~ 117 (508)
...+.++++++.+..+|... .++++.|++.+| .+..++...|.++++|++|++++|.++.++.. +.
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~ 82 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI-PADTKKLDLQSN------------KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK 82 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC-CTTCSEEECCSS------------CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS
T ss_pred CCCCEEEccCCCCCccCCCC-CCCCCEEECcCC------------CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc
Confidence 34678888888888777633 367888888883 33344444457888888888888888877744 57
Q ss_pred cCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCCccChhhhhcCCCCcE
Q 047733 118 LFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEE 194 (508)
Q Consensus 118 ~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 194 (508)
.+++|++|++++|.++. + ..+..+++|++|++++|.++.++. .+..+++|++|++++|. +..++...+..+++|++
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKE 161 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccce
Confidence 78888888888888777 3 567788888888888888876653 36788888888888876 66777655678888888
Q ss_pred EEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCC-CccCCCccEEEEEec
Q 047733 195 LYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRD-LSFFKMLQRYSILIG 259 (508)
Q Consensus 195 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~ 259 (508)
|++++|.+.... ...+..+++|+.|+++++....++.. +..+++|+.+.+.+.
T Consensus 162 L~L~~n~l~~~~------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 162 LRLYNNQLKRVP------------EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp EECCSSCCSCCC------------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred eEecCCcCcEeC------------hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 888888765221 13466778888888888886666654 466778887777543
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=9.1e-17 Score=150.85 Aligned_cols=178 Identities=22% Similarity=0.343 Sum_probs=150.2
Q ss_pred cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
.+++++++|++++|.+..++. +..+++|++|++.+| .+..++..+|.++++|++|++++|.++.++
T Consensus 34 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n------------~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~ 101 (270)
T 2o6q_A 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN------------KLQTLPAGIFKELKNLETLWVTDNKLQALP 101 (270)
T ss_dssp CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS------------CCSCCCTTTTSSCTTCCEEECCSSCCCCCC
T ss_pred CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC------------ccCeeChhhhcCCCCCCEEECCCCcCCcCC
Confidence 456789999999999988875 448999999999983 444566666789999999999999999877
Q ss_pred -hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcC
Q 047733 114 -SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSL 189 (508)
Q Consensus 114 -~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 189 (508)
..+..+++|++|++++|.++. +..++.+++|++|++++|.++.+|.. +..+++|++|++++|. +..++...+..+
T Consensus 102 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 180 (270)
T 2o6q_A 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKL 180 (270)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccC
Confidence 457899999999999999887 36689999999999999999988755 6889999999999987 777877557899
Q ss_pred CCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccC
Q 047733 190 SQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDE 238 (508)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 238 (508)
++|++|++++|.++... ...+..+++|+.|++++|..
T Consensus 181 ~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 181 TELKTLKLDNNQLKRVP------------EGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTCCEEECCSSCCSCCC------------TTTTTTCTTCCEEECCSSCB
T ss_pred CCcCEEECCCCcCCcCC------------HHHhccccCCCEEEecCCCe
Confidence 99999999999876221 13467889999999998863
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=7.7e-17 Score=162.52 Aligned_cols=197 Identities=18% Similarity=0.270 Sum_probs=160.6
Q ss_pred cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
.+.++++.|++++|.+..++. +..+++|++|++++| .+..++...|.++++|++|++++|.++.++
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n------------~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 128 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN------------HIRTIEIGAFNGLANLNTLELFDNRLTTIP 128 (440)
T ss_dssp CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS------------CCCEECGGGGTTCSSCCEEECCSSCCSSCC
T ss_pred CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC------------cCCccChhhccCCccCCEEECCCCcCCeeC
Confidence 456889999999999987753 348999999999993 344555555689999999999999999887
Q ss_pred h-hhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCC-CchhhHH-HhccCCCCceEeccCCCCCCccChhhhhc
Q 047733 114 S-SLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGS-DMEKLVE-EIGQLTHLRLLDLSNCFNLKVIPPNVISS 188 (508)
Q Consensus 114 ~-~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~-~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 188 (508)
. .+..+++|++|++++|.++. + ..+.++++|++|+++++ .+..++. .+..+++|++|++++|. +..+|. +..
T Consensus 129 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~ 205 (440)
T 3zyj_A 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTP 205 (440)
T ss_dssp TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTT
T ss_pred HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCC
Confidence 5 68899999999999999887 4 67889999999999985 6666664 47789999999999987 778876 789
Q ss_pred CCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC-CCCccCCCccEEEEEec
Q 047733 189 LSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP-RDLSFFKMLQRYSILIG 259 (508)
Q Consensus 189 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~~~ 259 (508)
+++|++|++++|.+.... ...+..+++|+.|+++++....++ ..+..+++|+.|++..+
T Consensus 206 l~~L~~L~Ls~N~l~~~~------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 206 LIKLDELDLSGNHLSAIR------------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp CSSCCEEECTTSCCCEEC------------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred CcccCEEECCCCccCccC------------hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 999999999999876332 356788899999999998865554 45677888888887644
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=4.6e-17 Score=153.44 Aligned_cols=199 Identities=20% Similarity=0.232 Sum_probs=158.6
Q ss_pred cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
.+.+++++|++++|.+.+++. +..+++|++|++.+| .+..++...|.++++|++|++++|.++.++
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC------------EIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC------------CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCC------------cCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 456789999999999987764 448999999999994 334445444688999999999999998765
Q ss_pred -hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchh--hHHHhccCCCCceEeccCCCCCCccChhhhhc
Q 047733 114 -SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEK--LVEEIGQLTHLRLLDLSNCFNLKVIPPNVISS 188 (508)
Q Consensus 114 -~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 188 (508)
..+..+++|++|++++|.++. + ..++.+++|++|++++|.++. +|..+..+++|++|++++|. +..++...+..
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 171 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRV 171 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHH
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhh
Confidence 678999999999999999887 3 568999999999999998885 67889999999999999987 77776544666
Q ss_pred CCCCc----EEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCC-ccCCCccEEEEEecC
Q 047733 189 LSQLE----ELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDL-SFFKMLQRYSILIGD 260 (508)
Q Consensus 189 l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~i~~~~ 260 (508)
+++|+ .|++++|.+... ........+|+.|+++++....++... ..+++|+.+.+.+..
T Consensus 172 l~~L~~l~l~L~ls~n~l~~~-------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNFI-------------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCEE-------------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hhhccccceeeecCCCccccc-------------CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 66666 889998887622 222333448999999999977777654 778899988886433
No 72
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=8.7e-17 Score=162.69 Aligned_cols=198 Identities=19% Similarity=0.260 Sum_probs=159.9
Q ss_pred cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
.+.++++.|++++|.+..++. +..+++|++|++++| .+..++...|.++++|++|++++|.++.++
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n------------~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 139 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN------------SIRQIEVGAFNGLASLNTLELFDNWLTVIP 139 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS------------CCCEECTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC------------ccCCcChhhccCcccCCEEECCCCcCCccC
Confidence 456789999999999987743 348999999999994 334444444688999999999999998877
Q ss_pred h-hhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCC-CchhhHH-HhccCCCCceEeccCCCCCCccChhhhhc
Q 047733 114 S-SLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGS-DMEKLVE-EIGQLTHLRLLDLSNCFNLKVIPPNVISS 188 (508)
Q Consensus 114 ~-~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~-~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 188 (508)
. .+..+++|++|++++|.++. + ..+.++++|++|+++++ .+..++. .+..+++|++|++++|. +..++. +..
T Consensus 140 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~ 216 (452)
T 3zyi_A 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTP 216 (452)
T ss_dssp TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTT
T ss_pred hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--ccc
Confidence 4 48889999999999999887 4 67889999999999984 6666664 47789999999999987 777775 688
Q ss_pred CCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccC-CCCCccCCCccEEEEEecC
Q 047733 189 LSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTL-PRDLSFFKMLQRYSILIGD 260 (508)
Q Consensus 189 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~ 260 (508)
+++|++|++++|.+... .+..+..+++|+.|+++++..... +..+..+++|+.|++..+.
T Consensus 217 l~~L~~L~Ls~N~l~~~------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEI------------RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp CTTCCEEECTTSCCSEE------------CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cccccEEECcCCcCccc------------CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 99999999999987633 235688889999999999885554 4456778889988886543
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=3.4e-16 Score=147.04 Aligned_cols=175 Identities=22% Similarity=0.303 Sum_probs=136.2
Q ss_pred CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch-h
Q 047733 37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS-S 115 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~ 115 (508)
.+++++.|++.++.+..++.+..+++|++|++.+|.+ ..++ . +..+++|++|++++|.++.++. .
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l------------~~~~-~-l~~l~~L~~L~L~~n~l~~~~~~~ 104 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL------------HDIS-A-LKELTNLTYLILTGNQLQSLPNGV 104 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCC------------CCCG-G-GTTCTTCCEEECTTSCCCCCCTTT
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCC------------CCch-h-hcCCCCCCEEECCCCccCccChhH
Confidence 4677899999999888888777899999999988433 2222 2 4788899999999998887664 4
Q ss_pred hccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCCCC
Q 047733 116 LRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQL 192 (508)
Q Consensus 116 ~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 192 (508)
+..+++|++|++++|.++. + ..++.+++|++|++++|.++.++.. +..+++|++|++++|. +..++...+..+++|
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQL 183 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccC
Confidence 6888999999999998877 4 5578889999999999988877644 5788899999999887 667776556788899
Q ss_pred cEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccC
Q 047733 193 EELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDE 238 (508)
Q Consensus 193 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 238 (508)
++|++++|.+.... ...+..+++|+.|++++|..
T Consensus 184 ~~L~L~~N~l~~~~------------~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 184 KDLRLYQNQLKSVP------------DGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CEEECCSSCCSCCC------------TTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCcCCccC------------HHHHhCCcCCCEEEccCCCc
Confidence 99999888776321 13467788888888887753
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=4.8e-16 Score=148.72 Aligned_cols=175 Identities=21% Similarity=0.352 Sum_probs=149.9
Q ss_pred cCCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh
Q 047733 36 DALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS 115 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~ 115 (508)
..++++++|++++|.+.+++.+..+++|++|++++|.+. .++ . +..+++|++|++++|.++.++.
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~------------~~~-~-~~~l~~L~~L~l~~n~l~~~~~- 124 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK------------NVS-A-IAGLQSIKTLDLTSTQITDVTP- 124 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCS------------CCG-G-GTTCTTCCEEECTTSCCCCCGG-
T ss_pred hccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCC------------Cch-h-hcCCCCCCEEECCCCCCCCchh-
Confidence 457899999999999998888779999999999995443 333 2 5789999999999999998875
Q ss_pred hccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEE
Q 047733 116 LRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL 195 (508)
Q Consensus 116 ~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 195 (508)
+..+++|++|++++|.++....++.+++|++|++++|.++.++. +..+++|++|++++|. +..++. +..+++|++|
T Consensus 125 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L 200 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNLIEV 200 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEE
T ss_pred hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCEE
Confidence 89999999999999999885448899999999999999998776 8899999999999987 777776 7899999999
Q ss_pred EeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCC
Q 047733 196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPR 243 (508)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 243 (508)
++++|.+... ..+..+++|+.|+++++.....|.
T Consensus 201 ~L~~N~l~~~--------------~~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 201 HLKNNQISDV--------------SPLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp ECTTSCCCBC--------------GGGTTCTTCCEEEEEEEEEECCCE
T ss_pred EccCCccCcc--------------ccccCCCCCCEEEccCCeeecCCe
Confidence 9999987622 247889999999999998655544
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=8.6e-18 Score=161.74 Aligned_cols=239 Identities=13% Similarity=0.086 Sum_probs=174.5
Q ss_pred CCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh
Q 047733 38 LKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS 115 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~ 115 (508)
.+++++|++++|.+..+++ +..+++|++|++++|.+ ...+. +..+++|++|++++|.++.++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------------~~~~~--~~~l~~L~~L~Ls~n~l~~l~-- 96 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL------------YETLD--LESLSTLRTLDLNNNYVQELL-- 96 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC------------EEEEE--ETTCTTCCEEECCSSEEEEEE--
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC------------Ccchh--hhhcCCCCEEECcCCcccccc--
Confidence 4579999999999988764 34899999999998433 22222 478999999999999987665
Q ss_pred hccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCCccCh-hhhhcCCCC
Q 047733 116 LRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLKVIPP-NVISSLSQL 192 (508)
Q Consensus 116 ~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L 192 (508)
..++|++|++++|.++. +.. .+++|++|++++|.++.++. .+..+++|++|++++|. +..++. .....+++|
T Consensus 97 --~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 97 --VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTL 171 (317)
T ss_dssp --ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTC
T ss_pred --CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcC
Confidence 33789999999999887 322 36889999999999887754 57788999999999987 555543 323478999
Q ss_pred cEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCcc
Q 047733 193 EELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDIS 272 (508)
Q Consensus 193 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~ 272 (508)
++|++++|.++.. .....+++|+.|++++|....++..+..+++|+.|.+..+.....
T Consensus 172 ~~L~L~~N~l~~~--------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l-------- 229 (317)
T 3o53_A 172 EHLNLQYNFIYDV--------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-------- 229 (317)
T ss_dssp CEEECTTSCCCEE--------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE--------
T ss_pred CEEECCCCcCccc--------------ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch--------
Confidence 9999999987622 233457899999999999888887788889999888764432111
Q ss_pred ceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCce
Q 047733 273 GIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLL 336 (508)
Q Consensus 273 ~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 336 (508)
+. ....+++|+.|++.+++-....... ....+++|+.+++.++..++
T Consensus 230 ---------------~~-~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 230 ---------------EK-ALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp ---------------CT-TCCCCTTCCEEECTTCCCBHHHHHH-HHHTCHHHHHHHHHHHHHHH
T ss_pred ---------------hh-HhhcCCCCCEEEccCCCccCcCHHH-HHhccccceEEECCCchhcc
Confidence 11 1235678899999877554232221 12457788888887665544
No 76
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=3.8e-16 Score=148.08 Aligned_cols=170 Identities=24% Similarity=0.354 Sum_probs=116.8
Q ss_pred CCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhc
Q 047733 38 LKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR 117 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~ 117 (508)
+++++.|++++|.+..++.+..+++|++|++++|. +..++. +.++++|++|++++|.++.++. +.
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~------------l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~ 109 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK------------LTDIKP--LANLKNLGWLFLDENKVKDLSS-LK 109 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC------------CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GT
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCc------------cCCCcc--cccCCCCCEEECCCCcCCCChh-hc
Confidence 55677777777777777666677777777777732 223333 4677777777777777776554 67
Q ss_pred cCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733 118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197 (508)
Q Consensus 118 ~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 197 (508)
.+++|++|++++|.++++..+..+++|++|++++|.++.+ ..+..+++|++|++++|. +..++. +..+++|+.|++
T Consensus 110 ~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp TCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEEC
T ss_pred cCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEEC
Confidence 7777777777777777655677777777777777777766 356677777777777766 555554 567777777777
Q ss_pred ecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCcc
Q 047733 198 GESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKT 240 (508)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 240 (508)
++|.++ .+..+..+++|+.|+++++....
T Consensus 186 ~~N~i~--------------~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 186 SKNHIS--------------DLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSSCCC--------------BCGGGTTCTTCSEEEEEEEEEEC
T ss_pred CCCcCC--------------CChhhccCCCCCEEECcCCcccC
Confidence 777665 12346677777777777765433
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=1.6e-16 Score=146.38 Aligned_cols=194 Identities=13% Similarity=0.183 Sum_probs=155.0
Q ss_pred CCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecC-CcCCCCc
Q 047733 37 ALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFAR-MHLLPLP 113 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~ 113 (508)
+.++++.|++++|.+..++. +..+++|++|++.+|. .+..++...|.++++|++|++++ |.++.++
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-----------~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV-----------TLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS-----------SCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC-----------CcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 56789999999999988876 3389999999999832 24555655568999999999998 8998776
Q ss_pred -hhhccCccccEEeccCCCCCCccccCCCCCCc---EEEccCC-CchhhHHH-hccCCCCc-eEeccCCCCCCccChhhh
Q 047733 114 -SSLRLFQNLQTLSLDYCELGDIAIVGDLKTLV---ILTLRGS-DMEKLVEE-IGQLTHLR-LLDLSNCFNLKVIPPNVI 186 (508)
Q Consensus 114 -~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~---~L~l~~~-~i~~lp~~-~~~l~~L~-~L~l~~~~~~~~~~~~~l 186 (508)
..|..+++|++|++++|.++..+.++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++++|. +..++...+
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~ 176 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAF 176 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTT
T ss_pred HHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhc
Confidence 56889999999999999988833378888888 9999999 89888754 78899999 99999987 778887644
Q ss_pred hcCCCCcEEEeecCC-CccccccCcCCCCcccchhhccCC-CCccEEEEecccCccCCCCCccCCCccEEEEE
Q 047733 187 SSLSQLEELYIGESP-IMWGKVGGVDGEGRNASLDELNNL-SKLTSLEILIEDEKTLPRDLSFFKMLQRYSIL 257 (508)
Q Consensus 187 ~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~ 257 (508)
.. ++|++|++++|. ++... ...+..+ ++|+.|+++++....+|.. .+++|+.|.+.
T Consensus 177 ~~-~~L~~L~L~~n~~l~~i~------------~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~ 234 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLTVID------------KDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIAR 234 (239)
T ss_dssp TT-CEEEEEECTTCTTCCEEC------------TTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECT
T ss_pred CC-CCCCEEEcCCCCCcccCC------------HHHhhccccCCcEEECCCCccccCChh--HhccCceeecc
Confidence 44 899999999984 65221 2446777 8999999999987777766 57788877653
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=1.5e-16 Score=149.48 Aligned_cols=182 Identities=20% Similarity=0.322 Sum_probs=148.6
Q ss_pred cCCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch-
Q 047733 36 DALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS- 114 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~- 114 (508)
..++++++|++++|.+.+++.+..+++|++|++.+| .+..++...|.++++|++|++++|.++.++.
T Consensus 60 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 127 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN------------QLQSLPNGVFDKLTNLKELVLVENQLQSLPDG 127 (272)
T ss_dssp GGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS------------CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred ccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC------------ccCccChhHhcCCcCCCEEECCCCcCCccCHH
Confidence 457899999999999988887779999999999993 3445555556899999999999999997764
Q ss_pred hhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCCC
Q 047733 115 SLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQ 191 (508)
Q Consensus 115 ~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 191 (508)
.++.+++|++|++++|.++. + ..++.+++|++|++++|.++.++.. +..+++|++|++++|. +..+++..+..+++
T Consensus 128 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTS 206 (272)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcC
Confidence 47899999999999999887 4 5578999999999999999877654 5789999999999988 77777665789999
Q ss_pred CcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc-CccCCCCCccCC
Q 047733 192 LEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED-EKTLPRDLSFFK 249 (508)
Q Consensus 192 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~ 249 (508)
|+.|++++|.+. +.+++|+.+++..+. .+.+|.+++.+.
T Consensus 207 L~~L~l~~N~~~-------------------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 207 LQYIWLHDNPWD-------------------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CCEEECCSSCBC-------------------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCEEEccCCCcc-------------------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 999999998764 334567777766655 455666654443
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=8e-17 Score=154.60 Aligned_cols=218 Identities=17% Similarity=0.196 Sum_probs=157.5
Q ss_pred CcccEEEeecCCCCC--CCCCC--------CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhh-hCCCCccEEEecCC
Q 047733 39 KVCTAISLKNSNISE--LPQVF--------ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFF-TGMRELRVLDFARM 107 (508)
Q Consensus 39 ~~lr~L~l~~~~~~~--l~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~ 107 (508)
..+++|++++|.+.. ++... .+++|++|++++|.+ ...+|..+| ..+++|++|++++|
T Consensus 63 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l-----------~~~~~~~~~~~~l~~L~~L~Ls~N 131 (312)
T 1wwl_A 63 DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV-----------TGTAPPPLLEATGPDLNILNLRNV 131 (312)
T ss_dssp HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC-----------BSCCCCCSSSCCSCCCSEEEEESC
T ss_pred HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc-----------cchhHHHHHHhcCCCccEEEccCC
Confidence 347777777777633 33322 488999999988432 234454433 78899999999999
Q ss_pred cCCCCchhhccC-----ccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchh---hHHHh--ccCCCCceEeccCC
Q 047733 108 HLLPLPSSLRLF-----QNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEK---LVEEI--GQLTHLRLLDLSNC 175 (508)
Q Consensus 108 ~~~~l~~~~~~l-----~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~---lp~~~--~~l~~L~~L~l~~~ 175 (508)
.++..|..++.+ ++|++|++++|+++. + ..++.+++|++|++++|.+.. +|..+ ..+++|++|++++|
T Consensus 132 ~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence 998778778777 899999999999887 4 788999999999999997542 45555 78999999999998
Q ss_pred CCCCc---cChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCcc
Q 047733 176 FNLKV---IPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQ 252 (508)
Q Consensus 176 ~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~ 252 (508)
. +.. ++...+..+++|++|++++|.+....+ ...+..+++|+.|++++|....+|..+. ++|+
T Consensus 212 ~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~ 277 (312)
T 1wwl_A 212 G-METPSGVCSALAAARVQLQGLDLSHNSLRDAAG-----------APSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLS 277 (312)
T ss_dssp C-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-----------CSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEE
T ss_pred c-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-----------hhhhhhcCCCCEEECCCCccChhhhhcc--CCce
Confidence 7 653 333434678999999999988763321 1334567899999999998878888764 7788
Q ss_pred EEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCC
Q 047733 253 RYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGS 306 (508)
Q Consensus 253 ~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~ 306 (508)
.|+++.+..... + ....+++|++|++.+.
T Consensus 278 ~L~Ls~N~l~~~-----------------------p--~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 278 VLDLSYNRLDRN-----------------------P--SPDELPQVGNLSLKGN 306 (312)
T ss_dssp EEECCSSCCCSC-----------------------C--CTTTSCEEEEEECTTC
T ss_pred EEECCCCCCCCC-----------------------h--hHhhCCCCCEEeccCC
Confidence 777764432111 1 1235788899988765
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=3.3e-16 Score=148.44 Aligned_cols=175 Identities=18% Similarity=0.232 Sum_probs=148.8
Q ss_pred cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
.+.++++.|++++|.+..++. +..+++|++|++.+|.+..++. ...+++|++|++++|.++.+|
T Consensus 28 ~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------------~~~l~~L~~L~Ls~N~l~~l~ 93 (290)
T 1p9a_G 28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--------------DGTLPVLGTLDLSHNQLQSLP 93 (290)
T ss_dssp CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--------------CSCCTTCCEEECCSSCCSSCC
T ss_pred CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--------------CCCCCcCCEEECCCCcCCcCc
Confidence 456889999999999977653 3489999999999955443322 157899999999999999999
Q ss_pred hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCC
Q 047733 114 SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLS 190 (508)
Q Consensus 114 ~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 190 (508)
..+..+++|++|++++|+++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..++...+..++
T Consensus 94 ~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLE 172 (290)
T ss_dssp CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCT
T ss_pred hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcC
Confidence 989999999999999999988 4 7799999999999999999988755 5789999999999987 8888887678899
Q ss_pred CCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccC
Q 047733 191 QLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDE 238 (508)
Q Consensus 191 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 238 (508)
+|++|++++|.++ .++.++....+|+.+++.+|..
T Consensus 173 ~L~~L~L~~N~l~-------------~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 173 NLDTLLLQENSLY-------------TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TCCEEECCSSCCC-------------CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCEEECCCCcCC-------------ccChhhcccccCCeEEeCCCCc
Confidence 9999999999886 3445666778999999998863
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=1.4e-15 Score=141.17 Aligned_cols=174 Identities=19% Similarity=0.294 Sum_probs=127.8
Q ss_pred cccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhcc
Q 047733 40 VCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRL 118 (508)
Q Consensus 40 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~ 118 (508)
..++++++++.+..+|.... ++++.|++.+|. +..++...|.++++|++|++++|.++.++ ..+..
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 81 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTG------------LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSC------------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCC------------cCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc
Confidence 35678888888887776433 678888888833 33333333578888888888888887655 45778
Q ss_pred CccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCCCCcEE
Q 047733 119 FQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL 195 (508)
Q Consensus 119 l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 195 (508)
+++|++|++++|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..++...+..+++|++|
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEE
Confidence 8888888888888777 3 6677888888888888888877654 5678888888888876 667776447788888888
Q ss_pred EeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCc
Q 047733 196 YIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEK 239 (508)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 239 (508)
++++|.+.... ...+..+++|+.|++++|...
T Consensus 161 ~L~~N~l~~~~------------~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 161 SLSTNQLQSVP------------HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ECCSSCCSCCC------------TTTTTTCTTCCEEECCSCCBC
T ss_pred ECCCCcCCccC------------HHHHhCCCCCCEEEeeCCcee
Confidence 88888776221 134667778888888877643
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=2.4e-15 Score=141.68 Aligned_cols=175 Identities=21% Similarity=0.327 Sum_probs=114.5
Q ss_pred EEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccc
Q 047733 44 ISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNL 122 (508)
Q Consensus 44 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L 122 (508)
++-.+..+..+|... -++|++|++++|. +..++...|.++++|++|++++|.++.++ ..+..+++|
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 78 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFNP------------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTCC------------CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTC
T ss_pred EEecCCCccccCCCC-CCCccEEECCCCc------------ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCC
Confidence 344444455566532 2468888888733 33344333577888888888888887655 467788888
Q ss_pred cEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCCc--cChhhhhcCCCCcEEEe
Q 047733 123 QTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLKV--IPPNVISSLSQLEELYI 197 (508)
Q Consensus 123 ~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l 197 (508)
++|++++|.++. +..+.++++|++|++++|.+..++. .+..+++|++|++++|. +.. +|.. +..+++|++|++
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~L 156 (276)
T 2z62_A 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDL 156 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEEC
T ss_pred CEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEEC
Confidence 888888888776 3677888888888888887776654 46778888888888876 444 4554 677888888888
Q ss_pred ecCCCccccccCcCCCCcccchhhccCCCCcc-EEEEecccCccCC
Q 047733 198 GESPIMWGKVGGVDGEGRNASLDELNNLSKLT-SLEILIEDEKTLP 242 (508)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~ 242 (508)
++|.++.... ..+..+..++.|. .|+++++....++
T Consensus 157 s~N~l~~~~~---------~~~~~l~~L~~l~l~L~ls~n~l~~~~ 193 (276)
T 2z62_A 157 SSNKIQSIYC---------TDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (276)
T ss_dssp CSSCCCEECG---------GGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred CCCCCCcCCH---------HHhhhhhhccccceeeecCCCcccccC
Confidence 8877653211 1223334444444 5666666544433
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=1.3e-16 Score=162.50 Aligned_cols=233 Identities=12% Similarity=0.073 Sum_probs=171.1
Q ss_pred CCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh
Q 047733 38 LKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS 115 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~ 115 (508)
+++++.|++++|.+..+++ +..+++|++|++++|.+. ..+. +..+++|++|++++|.++.+|.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~~--l~~l~~L~~L~Ls~N~l~~l~~- 97 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY------------ETLD--LESLSTLRTLDLNNNYVQELLV- 97 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE------------EEEE--CTTCTTCCEEECCSSEEEEEEE-
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC------------CCcc--cccCCCCCEEEecCCcCCCCCC-
Confidence 4589999999999988764 449999999999994332 2222 4789999999999999887663
Q ss_pred hccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhh-HHHhccCCCCceEeccCCCCCCc-cChhhhhcCCCC
Q 047733 116 LRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLRLLDLSNCFNLKV-IPPNVISSLSQL 192 (508)
Q Consensus 116 ~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~l~~L 192 (508)
.++|++|++++|.++. +. ..+++|++|++++|.+..+ |..+..+++|++|++++|. +.. .+......+++|
T Consensus 98 ---~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 98 ---GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTL 171 (487)
T ss_dssp ---CTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTC
T ss_pred ---CCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcc
Confidence 3789999999999888 43 2468999999999999866 4567889999999999988 554 444423479999
Q ss_pred cEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCcc
Q 047733 193 EELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDIS 272 (508)
Q Consensus 193 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~ 272 (508)
+.|++++|.++.. .....+++|+.|++++|....+|..+..+++|+.|+++.+.......
T Consensus 172 ~~L~Ls~N~l~~~--------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~------ 231 (487)
T 3oja_A 172 EHLNLQYNFIYDV--------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK------ 231 (487)
T ss_dssp CEEECTTSCCCEE--------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT------
T ss_pred cEEecCCCccccc--------------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccch------
Confidence 9999999988622 33446889999999999988888888888999999886543211111
Q ss_pred ceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCCCCCcEEEEe
Q 047733 273 GIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVV 330 (508)
Q Consensus 273 ~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 330 (508)
....+++|+.|++.+++........ ....++.|+.+.+.
T Consensus 232 ------------------~l~~l~~L~~L~l~~N~l~c~~~~~-~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 232 ------------------ALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQTVAKQ 270 (487)
T ss_dssp ------------------TCCCCTTCCEEECTTCCBCHHHHHH-HHTTCHHHHHHHHH
T ss_pred ------------------hhccCCCCCEEEcCCCCCcCcchHH-HHHhCCCCcEEecc
Confidence 1224577888888776543222111 12345666666554
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=4.9e-16 Score=147.38 Aligned_cols=187 Identities=21% Similarity=0.221 Sum_probs=153.7
Q ss_pred cccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccC
Q 047733 40 VCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLF 119 (508)
Q Consensus 40 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l 119 (508)
++.++.+....+.++.....+++|+.|++.+|.+ ..++. +..+++|++|++++|.++.++. +..+
T Consensus 25 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i------------~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l 89 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI------------KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANL 89 (291)
T ss_dssp HHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCC------------CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred HHHHHHhcCCCcccccchhhcCcccEEEccCCCc------------ccChh--HhcCCCCCEEEccCCccCCCcc-cccC
Confidence 3444556666666555555889999999998433 33333 4789999999999999998877 8999
Q ss_pred ccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeec
Q 047733 120 QNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGE 199 (508)
Q Consensus 120 ~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 199 (508)
++|++|++++|.++.+..++.+++|++|++++|.++.++ .+..+++|++|++++|. +..++. +..+++|++|++++
T Consensus 90 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 90 KNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLED 165 (291)
T ss_dssp TTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCS
T ss_pred CCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccC
Confidence 999999999999998767999999999999999998875 68899999999999987 666743 78999999999999
Q ss_pred CCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecC
Q 047733 200 SPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGD 260 (508)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~ 260 (508)
|.+.. . ..+..+++|+.|++++|....++. +..+++|+.|.+.++.
T Consensus 166 N~l~~-------------~-~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 166 NQISD-------------I-VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp SCCCC-------------C-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred Ccccc-------------c-hhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 98762 1 228889999999999998777654 6789999999998654
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=1.1e-15 Score=146.69 Aligned_cols=191 Identities=22% Similarity=0.244 Sum_probs=150.0
Q ss_pred CCcccEEEeecCCCC-CCCCC---CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCC-----CCccEEEecCCc
Q 047733 38 LKVCTAISLKNSNIS-ELPQV---FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGM-----RELRVLDFARMH 108 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~-~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~ 108 (508)
++++++|++++|.+. .+|.. ..+++|++|++++|.+ ..+|..+ ..+ ++|++|++++|.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l------------~~~~~~~-~~l~~~~~~~L~~L~L~~N~ 160 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW------------ATRDAWL-AELQQWLKPGLKVLSIAQAH 160 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC------------SSSSSHH-HHHHTTCCTTCCEEEEESCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC------------cchhHHH-HHHHHhhcCCCcEEEeeCCC
Confidence 678999999999995 45653 4899999999999433 3334333 444 999999999999
Q ss_pred CCCCc-hhhccCccccEEeccCCCCCC----cccc--CCCCCCcEEEccCCCch---hhHHH-hccCCCCceEeccCCCC
Q 047733 109 LLPLP-SSLRLFQNLQTLSLDYCELGD----IAIV--GDLKTLVILTLRGSDME---KLVEE-IGQLTHLRLLDLSNCFN 177 (508)
Q Consensus 109 ~~~l~-~~~~~l~~L~~L~l~~~~l~~----~~~i--~~l~~L~~L~l~~~~i~---~lp~~-~~~l~~L~~L~l~~~~~ 177 (508)
+..++ ..++++++|++|++++|++.. +..+ +.+++|++|++++|.++ .++.. +..+++|++|++++|.
T Consensus 161 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~- 239 (312)
T 1wwl_A 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS- 239 (312)
T ss_dssp CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-
T ss_pred CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-
Confidence 99776 789999999999999999654 3344 88999999999999888 44433 4588999999999988
Q ss_pred CCccC-hhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEE
Q 047733 178 LKVIP-PNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSI 256 (508)
Q Consensus 178 ~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i 256 (508)
+...+ ...+..+++|++|++++|.++ . ++..+. ++|+.|++++|.....|. +..+++|+.+.+
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~------------ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSFTGLK-Q------------VPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSL 303 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTTSCCS-S------------CCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEEC
T ss_pred CCcccchhhhhhcCCCCEEECCCCccC-h------------hhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEec
Confidence 54433 222567899999999999886 2 233344 789999999999877766 778888888877
Q ss_pred Ee
Q 047733 257 LI 258 (508)
Q Consensus 257 ~~ 258 (508)
.+
T Consensus 304 ~~ 305 (312)
T 1wwl_A 304 KG 305 (312)
T ss_dssp TT
T ss_pred cC
Confidence 53
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=3.5e-15 Score=155.11 Aligned_cols=173 Identities=24% Similarity=0.364 Sum_probs=145.5
Q ss_pred CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733 37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL 116 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 116 (508)
.++.++.|++.+|.+..++.+..+++|+.|++++|. +..++. +..+++|+.|++++|.+..++ .+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~------------l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l 105 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK------------LTDIKP--LTNLKNLGWLFLDENKIKDLS-SL 105 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC------------CCCCGG--GGGCTTCCEEECCSSCCCCCT-TS
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC------------CCCChh--hccCCCCCEEECcCCCCCCCh-hh
Confidence 467899999999999988887799999999999843 333343 478999999999999998876 58
Q ss_pred ccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733 117 RLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196 (508)
Q Consensus 117 ~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 196 (508)
..+++|+.|++++|.++.+..+..+++|+.|++++|.+..+ ..+..+++|+.|+|++|. +..+++ +..+++|+.|+
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~ 181 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLY 181 (605)
T ss_dssp TTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEE
T ss_pred ccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEE
Confidence 89999999999999988877788999999999999988877 468899999999999987 666665 78999999999
Q ss_pred eecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC
Q 047733 197 IGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP 242 (508)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 242 (508)
+++|.+. .+..+..+++|+.|++++|.....|
T Consensus 182 Ls~N~i~--------------~l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 182 LSKNHIS--------------DLRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCSSCCC--------------BCGGGTTCTTCSEEECCSEEEECCC
T ss_pred CcCCCCC--------------CChHHccCCCCCEEEccCCcCcCCc
Confidence 9999876 2245888999999999988754443
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=4.5e-15 Score=137.61 Aligned_cols=155 Identities=19% Similarity=0.304 Sum_probs=132.6
Q ss_pred cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
.+.++++.|++++|.+..++. +..+++|++|++++|. +..++...|..+++|++|++++|.++.++
T Consensus 32 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 99 (251)
T 3m19_A 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ------------LQTLSAGVFDDLTELGTLGLANNQLASLP 99 (251)
T ss_dssp CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC------------CCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc------------CCccCHhHhccCCcCCEEECCCCcccccC
Confidence 456789999999999987765 3489999999999943 33444455688999999999999999876
Q ss_pred -hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCCccChhhhhcC
Q 047733 114 -SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLKVIPPNVISSL 189 (508)
Q Consensus 114 -~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 189 (508)
..+..+++|++|++++|.++. + ..+..+++|++|++++|.++.+|. .+..+++|++|++++|. +..++...+..+
T Consensus 100 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 178 (251)
T 3m19_A 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRL 178 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCC
Confidence 567899999999999999988 4 557899999999999999998876 57899999999999987 777877558899
Q ss_pred CCCcEEEeecCCCc
Q 047733 190 SQLEELYIGESPIM 203 (508)
Q Consensus 190 ~~L~~L~l~~~~~~ 203 (508)
++|+.|++++|.+.
T Consensus 179 ~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 179 GKLQTITLFGNQFD 192 (251)
T ss_dssp TTCCEEECCSCCBC
T ss_pred CCCCEEEeeCCcee
Confidence 99999999999875
No 88
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=2.1e-15 Score=134.34 Aligned_cols=127 Identities=19% Similarity=0.274 Sum_probs=71.4
Q ss_pred hCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCch-hhHHHhccCCCCceE
Q 047733 94 TGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLL 170 (508)
Q Consensus 94 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L 170 (508)
..+++|++|++++|.++.++ .+..+++|++|++++|.++. +..++.+++|++|++++|.+. ..|..+..+++|++|
T Consensus 63 ~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 63 EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 45556666666666544433 35556666666666666554 455566666666666666555 244555666666666
Q ss_pred eccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733 171 DLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED 237 (508)
Q Consensus 171 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 237 (508)
++++|..+..++. +..+++|++|++++|.+.. +..+..+++|+.|+++++.
T Consensus 142 ~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~--------------~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 142 DLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD--------------YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC--------------CTTGGGCSSCCEEEECBC-
T ss_pred EccCCCCccccHh--hcCCCCCCEEECCCCCCcC--------------hHHhccCCCCCEEEeeCcc
Confidence 6666543444542 5566666666666655541 1245555666666666554
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=1.3e-15 Score=140.29 Aligned_cols=183 Identities=13% Similarity=0.155 Sum_probs=143.9
Q ss_pred cCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCc-CCCCch-hhccCccccEE
Q 047733 48 NSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMH-LLPLPS-SLRLFQNLQTL 125 (508)
Q Consensus 48 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~-~~~~l~~L~~L 125 (508)
...+..+|. -.++|++|++.+| .+..++...|.++++|++|++++|. ++.++. .|..+++|++|
T Consensus 20 c~~l~~ip~--~~~~l~~L~l~~n------------~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L 85 (239)
T 2xwt_C 20 CKDIQRIPS--LPPSTQTLKLIET------------HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHI 85 (239)
T ss_dssp ECSCSSCCC--CCTTCCEEEEESC------------CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEE
T ss_pred ccCccccCC--CCCcccEEEEeCC------------cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEE
Confidence 333677777 3458999999983 4445555556889999999999997 887774 78899999999
Q ss_pred eccC-CCCCC-c-cccCCCCCCcEEEccCCCchhhHHHhccCCCCc---eEeccCCCCCCccChhhhhcCCCCc-EEEee
Q 047733 126 SLDY-CELGD-I-AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLR---LLDLSNCFNLKVIPPNVISSLSQLE-ELYIG 198 (508)
Q Consensus 126 ~l~~-~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~ 198 (508)
++++ |.++. + ..+..+++|++|++++|.++.+|. +..+++|+ +|++++|..+..++...+..+++|+ .|+++
T Consensus 86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 9998 77887 4 678899999999999999998886 77888888 9999998448888876678999999 99999
Q ss_pred cCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc-CccCCC-CCccC-CCccEEEEEe
Q 047733 199 ESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED-EKTLPR-DLSFF-KMLQRYSILI 258 (508)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~-~l~~~-~~L~~L~i~~ 258 (508)
+|.++. +.......++|+.|+++++. ...++. .+..+ ++|+.+.+..
T Consensus 165 ~n~l~~-------------i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 165 NNGFTS-------------VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp SCCCCE-------------ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred CCCCcc-------------cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 988762 11222222689999999994 666654 45667 8888887753
No 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=1.6e-15 Score=141.50 Aligned_cols=171 Identities=20% Similarity=0.242 Sum_probs=134.8
Q ss_pred CCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhc
Q 047733 38 LKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR 117 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~ 117 (508)
+.++.++++..+.+.+++....+++|++|++.+|. +..++ . +..+++|++|++++|.++.++. +.
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~------------i~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~ 82 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSN------------IQSLA-G-MQFFTNLKELHLSHNQISDLSP-LK 82 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSC------------CCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GT
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCC------------cccch-H-HhhCCCCCEEECCCCccCCChh-hc
Confidence 45677788888888887766688999999998843 33344 2 4788999999999999988877 88
Q ss_pred cCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733 118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197 (508)
Q Consensus 118 ~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 197 (508)
.+++|++|++++|+++....+.. .+|++|++++|.++.++ .+..+++|++|++++|. +..++. +..+++|+.|++
T Consensus 83 ~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L 157 (263)
T 1xeu_A 83 DLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDL 157 (263)
T ss_dssp TCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEEC
T ss_pred cCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEEC
Confidence 89999999999999887433444 89999999999888776 58889999999999987 777764 788999999999
Q ss_pred ecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC
Q 047733 198 GESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP 242 (508)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 242 (508)
++|.+.. ...+..+++|+.|+++++.....|
T Consensus 158 ~~N~i~~--------------~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 158 HGNEITN--------------TGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TTSCCCB--------------CTTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCCcCcc--------------hHHhccCCCCCEEeCCCCcccCCc
Confidence 9888761 155777888999999888754443
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=5.3e-15 Score=133.00 Aligned_cols=147 Identities=22% Similarity=0.371 Sum_probs=93.7
Q ss_pred cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch-hhccCc
Q 047733 42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS-SLRLFQ 120 (508)
Q Consensus 42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~ 120 (508)
+.++..++.+..+|.. ..++|++|++.+| .+..++..+|..+++|++|++++|.++.++. .+..++
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 76 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETN------------SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSS------------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCC------------ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC
Confidence 3555555655555542 2456777777762 2333444445667777777777777766553 356677
Q ss_pred cccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733 121 NLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197 (508)
Q Consensus 121 ~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 197 (508)
+|++|++++|.++. + ..++.+++|++|++++|.++.++.. +..+++|++|++++|. +..++...+..+++|++|++
T Consensus 77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEe
Confidence 77777777777666 3 4456777777777777777666543 5667777777777765 55666544566777777777
Q ss_pred ecCCC
Q 047733 198 GESPI 202 (508)
Q Consensus 198 ~~~~~ 202 (508)
++|.+
T Consensus 156 ~~N~~ 160 (208)
T 2o6s_A 156 HDNPW 160 (208)
T ss_dssp CSCCB
T ss_pred cCCCe
Confidence 77654
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=1.3e-14 Score=129.26 Aligned_cols=149 Identities=17% Similarity=0.228 Sum_probs=117.2
Q ss_pred CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCC-Cchh
Q 047733 37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP-LPSS 115 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~ 115 (508)
.++++++|++++|.+..++.+..+++|++|++.+|. ...++ . +..+++|++|++++|.++. .+..
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~------------~~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~ 107 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIH------------ATNYN-P-ISGLSNLERLRIMGKDVTSDKIPN 107 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC------------CSCCG-G-GTTCTTCCEEEEECTTCBGGGSCC
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCC------------CCcch-h-hhcCCCCCEEEeECCccCcccChh
Confidence 457788999999888888866688899999998832 22222 2 4778899999999988874 6677
Q ss_pred hccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCC-chhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCC
Q 047733 116 LRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSD-MEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQL 192 (508)
Q Consensus 116 ~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L 192 (508)
++.+++|++|++++|.+++ +..++.+++|++|++++|. +..+| .+..+++|++|++++|. +..++. +..+++|
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L 183 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKL 183 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSC
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCC
Confidence 8888899999999988876 6778888999999999986 77777 67888899999998887 666663 6888999
Q ss_pred cEEEeecCCCc
Q 047733 193 EELYIGESPIM 203 (508)
Q Consensus 193 ~~L~l~~~~~~ 203 (508)
++|++++|.+.
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 99998887653
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=1e-14 Score=139.75 Aligned_cols=218 Identities=15% Similarity=0.111 Sum_probs=106.8
Q ss_pred cccEEEeecCCCCC--CC---CCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhh-hCCCCccEEEecCCcCCC-C
Q 047733 40 VCTAISLKNSNISE--LP---QVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFF-TGMRELRVLDFARMHLLP-L 112 (508)
Q Consensus 40 ~lr~L~l~~~~~~~--l~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~-l 112 (508)
.++++.+..+.+.. +. ....+++|++|++.+|.+ ....|..++ ..+++|++|++++|.++. .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-----------~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKI-----------TGTMPPLPLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCC-----------BSCCCCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEe-----------ccchhhhhhhccCCCCCEEEeecccccchh
Confidence 35566666555421 11 111345566666666322 222222222 456666666666666553 1
Q ss_pred c----hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchh---hHHH--hccCCCCceEeccCCCCCCcc
Q 047733 113 P----SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEK---LVEE--IGQLTHLRLLDLSNCFNLKVI 181 (508)
Q Consensus 113 ~----~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~---lp~~--~~~l~~L~~L~l~~~~~~~~~ 181 (508)
+ ..+..+++|++|++++|.++. +..++.+++|++|++++|.+.. ++.. +..+++|++|++++|. ++.+
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l 212 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METP 212 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCH
T ss_pred hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCch
Confidence 1 223346666666666666554 2556666666666666665432 3222 2456666666666655 4433
Q ss_pred Chh---hhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEe
Q 047733 182 PPN---VISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILI 258 (508)
Q Consensus 182 ~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~ 258 (508)
+.. .+..+++|++|++++|.+....+ ..+..+..+++|+.|++++|....+|..+ .++|+.|+++.
T Consensus 213 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p---------~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~ 281 (310)
T 4glp_A 213 TGVCAALAAAGVQPHSLDLSHNSLRATVN---------PSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSS 281 (310)
T ss_dssp HHHHHHHHHHTCCCSSEECTTSCCCCCCC---------SCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCS
T ss_pred HHHHHHHHhcCCCCCEEECCCCCCCccch---------hhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCC
Confidence 321 23455666666666665542211 01111222246666666666655555554 25666666654
Q ss_pred cCcccCCCCCCCccceeeEEecc
Q 047733 259 GDQWAWDSPSDDISGIFQLTVAS 281 (508)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~l~L~~ 281 (508)
+..... +....+++|+.+.+..
T Consensus 282 N~l~~~-~~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 282 NRLNRA-PQPDELPEVDNLTLDG 303 (310)
T ss_dssp CCCCSC-CCTTSCCCCSCEECSS
T ss_pred CcCCCC-chhhhCCCccEEECcC
Confidence 432222 2233444454444443
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=2e-15 Score=153.68 Aligned_cols=189 Identities=12% Similarity=0.129 Sum_probs=154.7
Q ss_pred cCCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh
Q 047733 36 DALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS 115 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~ 115 (508)
..+++++.|++++|.+.+.+++..+++|++|++++|.+..++ ..++|++|++++|.++.++.
T Consensus 55 ~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-----------------~~~~L~~L~L~~N~l~~~~~- 116 (487)
T 3oja_A 55 APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----------------VGPSIETLHAANNNISRVSC- 116 (487)
T ss_dssp TTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE-----------------ECTTCCEEECCSSCCCCEEE-
T ss_pred hCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC-----------------CCCCcCEEECcCCcCCCCCc-
Confidence 356889999999999976666779999999999995443332 23789999999999987764
Q ss_pred hccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchh-hHHHhc-cCCCCceEeccCCCCCCccChhhhhcCCC
Q 047733 116 LRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEK-LVEEIG-QLTHLRLLDLSNCFNLKVIPPNVISSLSQ 191 (508)
Q Consensus 116 ~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~-lp~~~~-~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 191 (508)
..+++|++|++++|.++. +..++.+++|++|++++|.+.. .|..+. .+++|++|++++|. +..++. ...+++
T Consensus 117 -~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~--~~~l~~ 192 (487)
T 3oja_A 117 -SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG--QVVFAK 192 (487)
T ss_dssp -CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC--CCCCTT
T ss_pred -cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc--cccCCC
Confidence 356889999999999887 4678899999999999998885 455554 78999999999988 767765 457999
Q ss_pred CcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEec
Q 047733 192 LEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIG 259 (508)
Q Consensus 192 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~ 259 (508)
|+.|++++|.++. ++..+..+++|+.|++++|....+|..+..+++|+.+.+.++
T Consensus 193 L~~L~Ls~N~l~~-------------~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 193 LKTLDLSSNKLAF-------------MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp CCEEECCSSCCCE-------------ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred CCEEECCCCCCCC-------------CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCC
Confidence 9999999998872 334577889999999999998888888888889988877543
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=3e-15 Score=155.60 Aligned_cols=188 Identities=21% Similarity=0.217 Sum_probs=155.4
Q ss_pred CcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhcc
Q 047733 39 KVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRL 118 (508)
Q Consensus 39 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~ 118 (508)
..+.++.+..+.+.++.....+++|+.|++.+|. +..++. +..+++|+.|++++|.+..++. +..
T Consensus 21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~------------i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~ 85 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSD------------IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTN 85 (605)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCC------------CCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGG
T ss_pred HHHHHHhccCCCcccccchhcCCCCCEEECcCCC------------CCCChH--HccCCCCCEEEeeCCCCCCChh-hcc
Confidence 3455666666666666665688999999999843 333442 4789999999999999998877 899
Q ss_pred CccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEee
Q 047733 119 FQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG 198 (508)
Q Consensus 119 l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 198 (508)
+++|+.|++++|.++.+..+..+++|++|++++|.+..++ .+..+++|+.|++++|. +..++. +..+++|+.|+++
T Consensus 86 l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLE 161 (605)
T ss_dssp CTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECC
T ss_pred CCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECc
Confidence 9999999999999998778999999999999999998875 58899999999999987 666643 7999999999999
Q ss_pred cCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecC
Q 047733 199 ESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGD 260 (508)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~ 260 (508)
+|.+... ..+..+++|+.|++++|....++ .+..+++|+.|.+..+.
T Consensus 162 ~N~l~~~--------------~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 162 DNQISDI--------------VPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp SSCCCCC--------------GGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEE
T ss_pred CCcCCCc--------------hhhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCc
Confidence 9987622 22888999999999999877664 56789999999987554
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=3.6e-14 Score=129.45 Aligned_cols=149 Identities=22% Similarity=0.291 Sum_probs=121.7
Q ss_pred ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccC
Q 047733 41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLF 119 (508)
Q Consensus 41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l 119 (508)
.+.++.+++.+..+|... .++|++|++++| .+..++...|..+++|++|++++|.++.+| ..+..+
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n------------~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 87 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDN------------QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSS------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCC------------ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC
Confidence 457888888888888643 488999999983 333343344588999999999999998877 456889
Q ss_pred ccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733 120 QNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197 (508)
Q Consensus 120 ~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 197 (508)
++|++|++++|.++. + ..+..+++|++|++++|.++.+|..+..+++|++|++++|. +..++...+..+++|+.|++
T Consensus 88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEe
Confidence 999999999999887 4 55788999999999999999998888999999999999987 77777655788899999999
Q ss_pred ecCCCc
Q 047733 198 GESPIM 203 (508)
Q Consensus 198 ~~~~~~ 203 (508)
.+|.+.
T Consensus 167 ~~N~~~ 172 (229)
T 3e6j_A 167 FGNPWD 172 (229)
T ss_dssp TTSCBC
T ss_pred eCCCcc
Confidence 888765
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=2.4e-15 Score=145.86 Aligned_cols=103 Identities=19% Similarity=0.226 Sum_probs=50.0
Q ss_pred CCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC---ccccCCCCCCcEEEccCCCch-hhHHHhccCCCCceEec
Q 047733 97 RELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD---IAIVGDLKTLVILTLRGSDME-KLVEEIGQLTHLRLLDL 172 (508)
Q Consensus 97 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~---~~~i~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l 172 (508)
+++++|++++|.+...+..+.++++|++|++++|.+++ +..+..+++|++|++++|.+. ..+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 45555555555554433334445555555555555442 234445555555555555444 34444555555555555
Q ss_pred cCCCCCCc--cChhhhhcCCCCcEEEeecC
Q 047733 173 SNCFNLKV--IPPNVISSLSQLEELYIGES 200 (508)
Q Consensus 173 ~~~~~~~~--~~~~~l~~l~~L~~L~l~~~ 200 (508)
++|..++. ++.. +..+++|++|++++|
T Consensus 150 ~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 150 SGCSGFSEFALQTL-LSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred CCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence 55532332 2221 445555555555555
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=8.1e-15 Score=140.45 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=35.4
Q ss_pred CCccEEEecCCcCC-CCchhh--ccCccccEEeccCCCCCC--c----cccCCCCCCcEEEccCCCchhhH-HHhccCCC
Q 047733 97 RELRVLDFARMHLL-PLPSSL--RLFQNLQTLSLDYCELGD--I----AIVGDLKTLVILTLRGSDMEKLV-EEIGQLTH 166 (508)
Q Consensus 97 ~~L~~L~l~~~~~~-~l~~~~--~~l~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~ 166 (508)
.+|++|++++|.+. ..|..+ ..+++|++|++++|.++. + ..+..+++|++|++++|.+..++ ..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 33555555555443 233333 444455555555544432 1 12233445555555555444332 23444445
Q ss_pred CceEeccCCC
Q 047733 167 LRLLDLSNCF 176 (508)
Q Consensus 167 L~~L~l~~~~ 176 (508)
|++|++++|.
T Consensus 171 L~~L~Ls~N~ 180 (310)
T 4glp_A 171 LTSLDLSDNP 180 (310)
T ss_dssp CCEEECCSCT
T ss_pred CCEEECCCCC
Confidence 5555555443
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=8.9e-16 Score=151.98 Aligned_cols=108 Identities=15% Similarity=0.155 Sum_probs=51.2
Q ss_pred hCCCCccEEEecCCcCCC-----CchhhccCccccEEeccCCCCCC--ccccC----CC---------CCCcEEEccCCC
Q 047733 94 TGMRELRVLDFARMHLLP-----LPSSLRLFQNLQTLSLDYCELGD--IAIVG----DL---------KTLVILTLRGSD 153 (508)
Q Consensus 94 ~~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~l~~--~~~i~----~l---------~~L~~L~l~~~~ 153 (508)
..+++|++|++++|.++. ++..+..+++|++|++++|.++. +..+. .+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 445555555555555543 44445555555555555555442 12222 22 555555555554
Q ss_pred ch--hhH---HHhccCCCCceEeccCCCCCCc-----cChhhhhcCCCCcEEEeecCCC
Q 047733 154 ME--KLV---EEIGQLTHLRLLDLSNCFNLKV-----IPPNVISSLSQLEELYIGESPI 202 (508)
Q Consensus 154 i~--~lp---~~~~~l~~L~~L~l~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~ 202 (508)
+. .++ ..+..+++|++|++++|. +.. +.+..+..+++|++|++++|.+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 43 232 334455555555555554 321 1110134555555555555544
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=1.5e-13 Score=133.85 Aligned_cols=102 Identities=16% Similarity=0.076 Sum_probs=74.2
Q ss_pred cceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCccc
Q 047733 296 KGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLA 375 (508)
Q Consensus 296 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~ 375 (508)
..++.|++.+. .++.+.... ....+|+++.+.+++.++.+..+ ....+++|+.|+++++ +++.++
T Consensus 154 ~~l~~L~L~~N-~i~~i~~~~--f~~~~L~~l~l~~~n~l~~i~~~------~f~~l~~L~~LdLs~N-~l~~lp----- 218 (350)
T 4ay9_X 154 FESVILWLNKN-GIQEIHNSA--FNGTQLDELNLSDNNNLEELPND------VFHGASGPVILDISRT-RIHSLP----- 218 (350)
T ss_dssp SSCEEEECCSS-CCCEECTTS--STTEEEEEEECTTCTTCCCCCTT------TTTTEECCSEEECTTS-CCCCCC-----
T ss_pred hhhhhhccccc-cccCCChhh--ccccchhHHhhccCCcccCCCHH------HhccCcccchhhcCCC-CcCccC-----
Confidence 46788888664 555554332 23567899999888888776421 1246789999999985 566653
Q ss_pred ccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeecc
Q 047733 376 AESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTE 415 (508)
Q Consensus 376 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 415 (508)
...+.+|+.|.+.++..++.+|. ...+++|+.+++..
T Consensus 219 ~~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 219 SYGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp SSSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred hhhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 35578999999999999999876 37799999999864
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=7.5e-15 Score=142.40 Aligned_cols=150 Identities=17% Similarity=0.244 Sum_probs=72.3
Q ss_pred CcccEEEeecCCCCCC-CCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCC-CChhhhhCCCCccEEEecCCcCC-CCchh
Q 047733 39 KVCTAISLKNSNISEL-PQVFECPQLKYFHIANDPSRRIPVHIANDPSRR-IPDKFFTGMRELRVLDFARMHLL-PLPSS 115 (508)
Q Consensus 39 ~~lr~L~l~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~-~l~~~ 115 (508)
++++.+++.++.+.+. +....+++|++|++++| ..... ++ .++..+++|++|++++|.++ ..+..
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~-----------~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~ 137 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS-----------VIEVSTLH-GILSQCSKLQNLSLEGLRLSDPIVNT 137 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTC-----------EECHHHHH-HHHTTBCCCSEEECTTCBCCHHHHHH
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCC-----------CcCHHHHH-HHHhhCCCCCEEeCcCcccCHHHHHH
Confidence 4455555555555332 22335555555555551 11111 12 22345555555555555554 34444
Q ss_pred hccCccccEEeccCC-CCCC---ccccCCCCCCcEEEccCC-Cchh--hHHHhccCC-CCceEeccCCC-CCC--ccChh
Q 047733 116 LRLFQNLQTLSLDYC-ELGD---IAIVGDLKTLVILTLRGS-DMEK--LVEEIGQLT-HLRLLDLSNCF-NLK--VIPPN 184 (508)
Q Consensus 116 ~~~l~~L~~L~l~~~-~l~~---~~~i~~l~~L~~L~l~~~-~i~~--lp~~~~~l~-~L~~L~l~~~~-~~~--~~~~~ 184 (508)
++.+++|++|++++| .+++ +..+..+++|++|++++| .++. ++..+..++ +|++|++++|. .+. .++..
T Consensus 138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~ 217 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 217 (336)
T ss_dssp HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH
Confidence 555555555555555 3443 233445555555555555 5542 444455555 55555555552 121 12222
Q ss_pred hhhcCCCCcEEEeecCC
Q 047733 185 VISSLSQLEELYIGESP 201 (508)
Q Consensus 185 ~l~~l~~L~~L~l~~~~ 201 (508)
+..+++|++|++++|.
T Consensus 218 -~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 218 -VRRCPNLVHLDLSDSV 233 (336)
T ss_dssp -HHHCTTCSEEECTTCT
T ss_pred -HhhCCCCCEEeCCCCC
Confidence 4455555555555554
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=5.1e-14 Score=131.28 Aligned_cols=147 Identities=24% Similarity=0.299 Sum_probs=127.7
Q ss_pred CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733 37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL 116 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 116 (508)
.+++++.|++++|.+..++.+..+++|++|++++|. +..++. +.++++|++|++++|.++.++...
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~------------i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~ 104 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ------------ISDLSP--LKDLTKLEELSVNRNRLKNLNGIP 104 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC------------CCCCGG--GTTCSSCCEEECCSSCCSCCTTCC
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCc------------cCCChh--hccCCCCCEEECCCCccCCcCccc
Confidence 467899999999999999877799999999999943 344444 589999999999999999887643
Q ss_pred ccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEE
Q 047733 117 RLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELY 196 (508)
Q Consensus 117 ~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 196 (508)
. ++|++|++++|.++.+..++.+++|++|++++|.++.++ .+..+++|++|++++|. +..+.. +..+++|+.|+
T Consensus 105 ~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~ 178 (263)
T 1xeu_A 105 S--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGG--LTRLKKVNWID 178 (263)
T ss_dssp C--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTT--STTCCCCCEEE
T ss_pred c--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHH--hccCCCCCEEe
Confidence 3 899999999999998667999999999999999999887 68899999999999988 666633 78999999999
Q ss_pred eecCCCc
Q 047733 197 IGESPIM 203 (508)
Q Consensus 197 l~~~~~~ 203 (508)
+++|.+.
T Consensus 179 l~~N~~~ 185 (263)
T 1xeu_A 179 LTGQKCV 185 (263)
T ss_dssp EEEEEEE
T ss_pred CCCCccc
Confidence 9998775
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=4.9e-14 Score=127.71 Aligned_cols=148 Identities=19% Similarity=0.378 Sum_probs=110.8
Q ss_pred cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhccCc
Q 047733 42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLFQ 120 (508)
Q Consensus 42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~ 120 (508)
+.++.+++.+..+|... .++|+.|++.+|. +..++...|..+++|++|++++|.++.+ |..|..++
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~------------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~ 80 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNT------------IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSC------------CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCc------------CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc
Confidence 56777788887777643 2688888888833 3344444457788888888888888765 67788888
Q ss_pred cccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733 121 NLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197 (508)
Q Consensus 121 ~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 197 (508)
+|++|++++|.++. + ..+..+++|++|++++|.++.++ ..+..+++|++|++++|. +..++...+..+++|+.|++
T Consensus 81 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEe
Confidence 88888888888877 4 45677888888888888887663 557788888888888877 66676655677888888888
Q ss_pred ecCCCc
Q 047733 198 GESPIM 203 (508)
Q Consensus 198 ~~~~~~ 203 (508)
++|.+.
T Consensus 160 ~~N~~~ 165 (220)
T 2v9t_B 160 AQNPFI 165 (220)
T ss_dssp CSSCEE
T ss_pred CCCCcC
Confidence 877654
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=1.1e-13 Score=142.29 Aligned_cols=176 Identities=19% Similarity=0.201 Sum_probs=142.1
Q ss_pred cccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccC
Q 047733 40 VCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLF 119 (508)
Q Consensus 40 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l 119 (508)
+++.|++++|.+.++|... +++|++|++++|.+ ..+| ..+++|++|++++|.++.+|. +..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l------------~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNAL------------ISLP----ELPASLEYLDACDNRLSTLPE-LPA- 120 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCC------------SCCC----CCCTTCCEEECCSSCCSCCCC-CCT-
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCC------------cccc----cccCCCCEEEccCCCCCCcch-hhc-
Confidence 7899999999998888744 48999999999443 3445 246899999999999998888 665
Q ss_pred ccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEee
Q 047733 120 QNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG 198 (508)
Q Consensus 120 ~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 198 (508)
+|++|++++|.++. |. .+++|++|++++|.++.+|. .+++|++|++++|. +..+|. +. ++|+.|+++
T Consensus 121 -~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 -SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVS 188 (571)
T ss_dssp -TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECC
T ss_pred -CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECc
Confidence 89999999999888 45 68999999999999988875 67899999999987 777877 44 899999999
Q ss_pred cCCCccccccCcCCCCcccchhhccC-----CCCccEEEEecccCccCCCCCccCCCccEEEEEecC
Q 047733 199 ESPIMWGKVGGVDGEGRNASLDELNN-----LSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGD 260 (508)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~ 260 (508)
+|.++ . ++. +.. .+.|+.|++++|....+|..+..+++|+.|.+..+.
T Consensus 189 ~N~L~-~------------lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 189 TNLLE-S------------LPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp SSCCS-S------------CCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred CCCCC-c------------hhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 99876 1 112 222 223399999999988999988789999999886544
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=7.4e-14 Score=126.49 Aligned_cols=149 Identities=17% Similarity=0.300 Sum_probs=114.9
Q ss_pred cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch-hhccCc
Q 047733 42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS-SLRLFQ 120 (508)
Q Consensus 42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~ 120 (508)
+.++++++.+..+|... .+.++.|++.+|.+..+ .+..+|..+++|++|++++|.++.++. .|..++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~-----------~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 81 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVL-----------EATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEE-----------CCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCcc-----------CchhhhccCCCCCEEECCCCcCCEECHHHhCCCC
Confidence 57888888888887633 45678899988433322 133445788999999999999887654 788899
Q ss_pred cccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhh-HHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEe
Q 047733 121 NLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYI 197 (508)
Q Consensus 121 ~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 197 (508)
+|++|++++|.++. + ..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+++..+..+++|+.|++
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEe
Confidence 99999999998887 3 5688899999999999988866 4567788899999998877 66665444788888888888
Q ss_pred ecCCCc
Q 047733 198 GESPIM 203 (508)
Q Consensus 198 ~~~~~~ 203 (508)
++|.+.
T Consensus 161 ~~N~l~ 166 (220)
T 2v70_A 161 LANPFN 166 (220)
T ss_dssp CSCCEE
T ss_pred cCcCCc
Confidence 888765
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=5.1e-14 Score=126.49 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=125.2
Q ss_pred cCCCcccEEEeecCCCCCCCCC--CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 36 DALKVCTAISLKNSNISELPQV--FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
...+++++|++++|.+..++.. ..+++|++|++.+| .+..++...|..+++|++|++++|.++.++
T Consensus 25 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 92 (208)
T 2o6s_A 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN------------KLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92 (208)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC------------ccCccChhhcCCCCCcCEEECCCCcCCccC
Confidence 4567899999999999888763 38999999999994 344556566689999999999999999877
Q ss_pred h-hhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCCCCCccChhhhhcC
Q 047733 114 S-SLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCFNLKVIPPNVISSL 189 (508)
Q Consensus 114 ~-~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 189 (508)
. .+..+++|++|++++|.++. + ..+..+++|++|++++|.++.++.. +..+++|++|++++|.. .+.+
T Consensus 93 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~ 164 (208)
T 2o6s_A 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTC 164 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCT
T ss_pred HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCC
Confidence 5 47899999999999999887 4 5588999999999999999877755 67899999999999852 2456
Q ss_pred CCCcEEEeecCCCcccc
Q 047733 190 SQLEELYIGESPIMWGK 206 (508)
Q Consensus 190 ~~L~~L~l~~~~~~~~~ 206 (508)
++|+.|++..+.+++..
T Consensus 165 ~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 165 PGIRYLSEWINKHSGVV 181 (208)
T ss_dssp TTTHHHHHHHHHCTTTB
T ss_pred CCHHHHHHHHHhCCcee
Confidence 78888888887776443
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=7e-15 Score=145.53 Aligned_cols=63 Identities=19% Similarity=0.095 Sum_probs=34.1
Q ss_pred cccceeEEEecCCCCccccc-----cCCcCCCCCCCcEEEEecCCCcee-----eeecccCCCCCCCcCcCcceeeccCc
Q 047733 294 QLKGIKELCLGGSLDMKSVL-----YGSHGEGFPQLKHLEVVENSNLLC-----VVDTVDRATAPTTAFPVLESLFLRDL 363 (508)
Q Consensus 294 ~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~-----i~~~~~~~~~~~~~~p~L~~L~l~~c 363 (508)
.+++|++|++.++. ++... ..+....+++|++|++++|. ++. ++.. ....+|+|+.|++.++
T Consensus 242 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~------l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 242 SWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTV------IDEKMPDLLFLELNGN 313 (386)
T ss_dssp GCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHH------HHHHCTTCCEEECTTS
T ss_pred cCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHH------HHhcCCCceEEEccCC
Confidence 45677777776664 33221 11111336778888887753 332 1110 0123688888888886
Q ss_pred c
Q 047733 364 R 364 (508)
Q Consensus 364 ~ 364 (508)
+
T Consensus 314 ~ 314 (386)
T 2ca6_A 314 R 314 (386)
T ss_dssp B
T ss_pred c
Confidence 5
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=1.9e-13 Score=133.18 Aligned_cols=196 Identities=15% Similarity=0.108 Sum_probs=127.8
Q ss_pred cCCCcccEEEeecCCCCCCCCC--CCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccE-EEecCCcCCCC
Q 047733 36 DALKVCTAISLKNSNISELPQV--FECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRV-LDFARMHLLPL 112 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~l~~~~~~~l 112 (508)
++++++++|++++|.+..++.. .++++|++|++++|.+ ...++..+|.++.+++. +.+.+|++..+
T Consensus 27 ~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i-----------~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 27 DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV-----------LEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT-----------CCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC-----------CCccChhHhhcchhhhhhhcccCCccccc
Confidence 4667899999999999888763 4899999999998432 33445555667766554 55566777765
Q ss_pred c-hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccC-CCchhhHHH-hccC-CCCceEeccCCCCCCccChhhh
Q 047733 113 P-SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRG-SDMEKLVEE-IGQL-THLRLLDLSNCFNLKVIPPNVI 186 (508)
Q Consensus 113 ~-~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~-~~i~~lp~~-~~~l-~~L~~L~l~~~~~~~~~~~~~l 186 (508)
+ ..|..+++|++|++++|.++. + ..+....++..|++.+ +.+..++.. +..+ ..++.|++++|. ++.++.. .
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~-~ 173 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNS-A 173 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTT-S
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChh-h
Confidence 4 567778888888888887766 3 3444556677777755 356655533 3343 357777877766 6677765 3
Q ss_pred hcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEE
Q 047733 187 SSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSIL 257 (508)
Q Consensus 187 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~ 257 (508)
....+|++|.+..++.....+ ...++.+++|+.|++++|....+|.. .+.+|+.|...
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~-----------~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l 231 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELP-----------NDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRAR 231 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCC-----------TTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECT
T ss_pred ccccchhHHhhccCCcccCCC-----------HHHhccCcccchhhcCCCCcCccChh--hhccchHhhhc
Confidence 455677777776533321111 12356677788888888777777664 35556665543
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=1.1e-13 Score=135.38 Aligned_cols=148 Identities=18% Similarity=0.270 Sum_probs=77.9
Q ss_pred cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhh-CCCCccEEEecCCcCCCCc-hhhccC
Q 047733 42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFT-GMRELRVLDFARMHLLPLP-SSLRLF 119 (508)
Q Consensus 42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~l~-~~~~~l 119 (508)
+.++.+++.+..+|... .+.++.|++++|. +..++...|. ++.+|++|++++|.++.++ ..|..+
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~------------l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l 87 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNN------------LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSC------------CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCC------------CCccChhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence 35555555555555422 2345566665522 2223333233 5566666666666665544 345556
Q ss_pred ccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhh-HHHhccCCCCceEeccCCCCCCccChhhh---hcCCCCc
Q 047733 120 QNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLRLLDLSNCFNLKVIPPNVI---SSLSQLE 193 (508)
Q Consensus 120 ~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~ 193 (508)
++|++|++++|+++. + ..+..+.+|++|++++|.+..+ |..+..+++|++|++++|. +..++...+ ..+++|+
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCC
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCC
Confidence 666666666666554 2 3455566666666666655544 3345556666666666654 555554422 3456666
Q ss_pred EEEeecCCCc
Q 047733 194 ELYIGESPIM 203 (508)
Q Consensus 194 ~L~l~~~~~~ 203 (508)
.|++++|.+.
T Consensus 167 ~L~L~~N~l~ 176 (361)
T 2xot_A 167 LLDLSSNKLK 176 (361)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCCCC
Confidence 6666665554
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=8.5e-14 Score=136.38 Aligned_cols=203 Identities=12% Similarity=0.147 Sum_probs=142.6
Q ss_pred CCCcccEEEeecCCCCCCCC------CCCCC-CCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCC-----CCccEEEe
Q 047733 37 ALKVCTAISLKNSNISELPQ------VFECP-QLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGM-----RELRVLDF 104 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~~------~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l 104 (508)
..+++++|++++|.+.+.+. +..++ +|++|++++|.+ .......+..+ ++|++|++
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l------------~~~~~~~l~~~l~~~~~~L~~L~L 87 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL------------GFKNSDELVQILAAIPANVTSLNL 87 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG------------GGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC------------CHHHHHHHHHHHhccCCCccEEEC
Confidence 35669999999999976653 22777 899999999433 22222222332 89999999
Q ss_pred cCCcCCCCc-hh----hccC-ccccEEeccCCCCCC--ccc----cCC-CCCCcEEEccCCCch-----hhHHHhccCC-
Q 047733 105 ARMHLLPLP-SS----LRLF-QNLQTLSLDYCELGD--IAI----VGD-LKTLVILTLRGSDME-----KLVEEIGQLT- 165 (508)
Q Consensus 105 ~~~~~~~l~-~~----~~~l-~~L~~L~l~~~~l~~--~~~----i~~-l~~L~~L~l~~~~i~-----~lp~~~~~l~- 165 (508)
++|.++..+ .. +..+ ++|++|++++|.+++ +.. +.. ..+|++|++++|.+. .++..+..++
T Consensus 88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 167 (362)
T 3goz_A 88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA 167 (362)
T ss_dssp CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT
T ss_pred cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc
Confidence 999987533 33 4444 799999999999876 233 344 369999999999887 6667777776
Q ss_pred CCceEeccCCCCCCccChh----hhhcC-CCCcEEEeecCCCccccccCcCCCCcccchhhccC-CCCccEEEEecccCc
Q 047733 166 HLRLLDLSNCFNLKVIPPN----VISSL-SQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN-LSKLTSLEILIEDEK 239 (508)
Q Consensus 166 ~L~~L~l~~~~~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~ 239 (508)
+|++|++++|. +...... .+..+ ++|++|++++|.+... ....+...+.. .++|+.|++++|...
T Consensus 168 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~--------~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 168 NVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLK--------SYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp TCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS--------CHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred cccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChh--------HHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 99999999987 5555432 23445 5999999999987622 12234455555 358999999998855
Q ss_pred cCC-----CCCccCCCccEEEEEecC
Q 047733 240 TLP-----RDLSFFKMLQRYSILIGD 260 (508)
Q Consensus 240 ~~~-----~~l~~~~~L~~L~i~~~~ 260 (508)
..+ ..+..+++|+.|.+..+.
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCC
Confidence 443 233667888988887554
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=2.3e-13 Score=117.68 Aligned_cols=138 Identities=22% Similarity=0.144 Sum_probs=89.4
Q ss_pred CCCccEEEecCCcCC--CCchhhccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchh-hHHHhccCCCCceEec
Q 047733 96 MRELRVLDFARMHLL--PLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEK-LVEEIGQLTHLRLLDL 172 (508)
Q Consensus 96 l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l 172 (508)
.++|++|++++|.++ .+|..+..+++|++|++++|.++....++.+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 466777777777776 6666667777777777777776665666677777777777777665 5655666777777777
Q ss_pred cCCCCCCccCh-hhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCCC
Q 047733 173 SNCFNLKVIPP-NVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLPR 243 (508)
Q Consensus 173 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 243 (508)
++|. +..++. ..+..+++|++|++++|.++.... .....+..+++|+.|++.++.....|.
T Consensus 103 s~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~---------~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLND---------YRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTT---------HHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHH---------HHHHHHHhCccCcEecCCCCChhhccc
Confidence 7765 555542 225677777777777776542110 001246667777777777766555544
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=8.4e-14 Score=136.40 Aligned_cols=109 Identities=14% Similarity=0.177 Sum_probs=50.2
Q ss_pred hCCC-CccEEEecCCcCCCC-chhhccC-----ccccEEeccCCCCCC--ccc----cCCC-CCCcEEEccCCCchhhH-
Q 047733 94 TGMR-ELRVLDFARMHLLPL-PSSLRLF-----QNLQTLSLDYCELGD--IAI----VGDL-KTLVILTLRGSDMEKLV- 158 (508)
Q Consensus 94 ~~l~-~L~~L~l~~~~~~~l-~~~~~~l-----~~L~~L~l~~~~l~~--~~~----i~~l-~~L~~L~l~~~~i~~lp- 158 (508)
..++ +|++|++++|.++.. +..+..+ ++|++|++++|.+++ +.. +..+ ++|++|++++|.++..+
T Consensus 47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 4455 566666666655432 3333333 556666666655543 121 2233 55566666555554222
Q ss_pred ----HHhcc-CCCCceEeccCCCCCCccChh----hhhcCC-CCcEEEeecCCCc
Q 047733 159 ----EEIGQ-LTHLRLLDLSNCFNLKVIPPN----VISSLS-QLEELYIGESPIM 203 (508)
Q Consensus 159 ----~~~~~-l~~L~~L~l~~~~~~~~~~~~----~l~~l~-~L~~L~l~~~~~~ 203 (508)
..+.. .++|++|++++|. ++..... .+..++ +|++|++++|.+.
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 11222 2455555555554 3321110 123333 5555555555543
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=4.2e-13 Score=121.51 Aligned_cols=128 Identities=14% Similarity=0.254 Sum_probs=92.0
Q ss_pred CCccEEEecCCcCCCCch-hhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEec
Q 047733 97 RELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDL 172 (508)
Q Consensus 97 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l 172 (508)
.+++.|++++|.++.++. .|..+++|++|++++|.++. +..+.++++|++|++++|.++.+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 567888888888876653 67778888888888888776 46777888888888888887777654 467788888888
Q ss_pred cCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733 173 SNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED 237 (508)
Q Consensus 173 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 237 (508)
++|. +..+++..+..+++|++|++++|.++... ...+..+++|+.|++++|.
T Consensus 112 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 112 NANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIA------------KGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC------------TTTTTTCTTCCEEECCSSC
T ss_pred CCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEEC------------HHHHhCCCCCCEEEeCCCC
Confidence 8876 66665444677788888888877765221 1235666777777777664
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=2.9e-13 Score=132.49 Aligned_cols=155 Identities=24% Similarity=0.297 Sum_probs=109.5
Q ss_pred cCCCcccEEEeecCCCCCCCCC--C-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCC
Q 047733 36 DALKVCTAISLKNSNISELPQV--F-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPL 112 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 112 (508)
.+.+.++.|++++|.+.+++.. . .+++|++|++++| .+..++...|.++++|++|++++|.++.+
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N------------~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 103 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN------------HLNFISSEAFVPVPNLRYLDLSSNHLHTL 103 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS------------CCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC------------cCCccChhhccCCCCCCEEECCCCcCCcC
Confidence 3456678888888888766542 2 6788888888773 33344444457788888888888888766
Q ss_pred c-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHHh----ccCCCCceEeccCCCCCCccChhh
Q 047733 113 P-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEEI----GQLTHLRLLDLSNCFNLKVIPPNV 185 (508)
Q Consensus 113 ~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~~----~~l~~L~~L~l~~~~~~~~~~~~~ 185 (508)
+ ..|..+++|++|++++|.++. +..+..+++|++|++++|.++.+|..+ ..+++|++|++++|. +..++...
T Consensus 104 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~ 182 (361)
T 2xot_A 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTD 182 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHH
T ss_pred CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHH
Confidence 5 357778888888888888776 467778888888888888887776554 467888888888876 66777654
Q ss_pred hhcCCC--CcEEEeecCCCc
Q 047733 186 ISSLSQ--LEELYIGESPIM 203 (508)
Q Consensus 186 l~~l~~--L~~L~l~~~~~~ 203 (508)
+..++. ++.|++.+|.+.
T Consensus 183 ~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHSCHHHHTTEECCSSCEE
T ss_pred hhhccHhhcceEEecCCCcc
Confidence 666766 367777776553
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=8.6e-13 Score=119.45 Aligned_cols=128 Identities=14% Similarity=0.180 Sum_probs=95.0
Q ss_pred CCccEEEecCCcCCCCc--hhhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEe
Q 047733 97 RELRVLDFARMHLLPLP--SSLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLD 171 (508)
Q Consensus 97 ~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~ 171 (508)
..+++|++++|.++.++ ..+..+++|++|++++|.++. + ..+..+++|++|++++|.++.++. .+..+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 44678888888887663 347788888888888888877 3 578888888888888888876654 367888888888
Q ss_pred ccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733 172 LSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED 237 (508)
Q Consensus 172 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 237 (508)
+++|. +..+++..+..+++|++|++++|.++... +..+..+++|+.|++++|.
T Consensus 112 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 112 LRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVA------------PGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBC------------TTTTTTCTTCCEEECCSCC
T ss_pred CCCCc-CCeECHhHcCCCccCCEEECCCCcCCEEC------------HHHhcCCCCCCEEEecCcC
Confidence 88877 66665444678888888888888776321 2456677788888877765
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=4.5e-13 Score=115.89 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=86.2
Q ss_pred CCcccEEEeecCCCC--CCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCC-Cc
Q 047733 38 LKVCTAISLKNSNIS--ELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP-LP 113 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~ 113 (508)
++++++|++++|.+. .++... .+++|++|++.+|.+. .+ ..+..+++|++|++++|.++. +|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~------------~~--~~~~~l~~L~~L~Ls~N~l~~~~~ 88 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI------------SV--SNLPKLPKLKKLELSENRIFGGLD 88 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC------------CC--SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC------------Ch--hhhccCCCCCEEECcCCcCchHHH
Confidence 466788888887775 666553 6777777777773332 22 123667777777777777765 66
Q ss_pred hhhccCccccEEeccCCCCCC-c--cccCCCCCCcEEEccCCCchhhHH----HhccCCCCceEeccCCCCCCccC
Q 047733 114 SSLRLFQNLQTLSLDYCELGD-I--AIVGDLKTLVILTLRGSDMEKLVE----EIGQLTHLRLLDLSNCFNLKVIP 182 (508)
Q Consensus 114 ~~~~~l~~L~~L~l~~~~l~~-~--~~i~~l~~L~~L~l~~~~i~~lp~----~~~~l~~L~~L~l~~~~~~~~~~ 182 (508)
..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+..+|. .+..+++|++|++++|. ...+|
T Consensus 89 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp HHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred HHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 666667777777777777666 3 566777777777777776665553 56667777777776665 44444
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=1.1e-12 Score=119.58 Aligned_cols=132 Identities=19% Similarity=0.204 Sum_probs=113.2
Q ss_pred cCCCcccEEEeecCCCCCCCC--CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc
Q 047733 36 DALKVCTAISLKNSNISELPQ--VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP 113 (508)
Q Consensus 36 ~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~ 113 (508)
.+.++++.|++++|.+..+++ +..+++|++|++.+| .+..++...|..+++|++|++++|.++.++
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N------------~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 104 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN------------QLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC------------CCCCcChhhcccCCCcCEEECCCCcCCccC
Confidence 456899999999999988754 338999999999994 345556566789999999999999999877
Q ss_pred h-hhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCC
Q 047733 114 S-SLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLK 179 (508)
Q Consensus 114 ~-~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~ 179 (508)
. .+..+++|++|++++|.++. |..+..+++|++|++++|.++.++. .+..+++|++|++.+|....
T Consensus 105 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred hhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 5 47899999999999999998 7888999999999999999998874 47889999999999987433
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=1.3e-12 Score=134.46 Aligned_cols=157 Identities=19% Similarity=0.247 Sum_probs=127.8
Q ss_pred CCCcccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733 37 ALKVCTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL 116 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 116 (508)
++++++.|++++|.+..+| ..+++|++|++++|.+. .+|. + .. +|++|++++|.++.+|.
T Consensus 78 l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~------------~ip~-l-~~--~L~~L~Ls~N~l~~lp~-- 137 (571)
T 3cvr_A 78 LPPQITVLEITQNALISLP--ELPASLEYLDACDNRLS------------TLPE-L-PA--SLKHLDVDNNQLTMLPE-- 137 (571)
T ss_dssp CCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCS------------CCCC-C-CT--TCCEEECCSSCCSCCCC--
T ss_pred HcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCC------------Ccch-h-hc--CCCEEECCCCcCCCCCC--
Confidence 5688999999999999998 56899999999994433 3444 2 33 89999999999998887
Q ss_pred ccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCC---
Q 047733 117 RLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQL--- 192 (508)
Q Consensus 117 ~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--- 192 (508)
.+++|++|++++|.++. |. .+++|++|++++|.++.+|. +. ++|+.|++++|. +..+|. +.. +|
T Consensus 138 -~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~ 205 (571)
T 3cvr_A 138 -LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHHS 205 (571)
T ss_dssp -CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC--------
T ss_pred -cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhcc
Confidence 68899999999999887 44 57899999999999988887 54 899999999987 777776 333 66
Q ss_pred ----cEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccC
Q 047733 193 ----EELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDE 238 (508)
Q Consensus 193 ----~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 238 (508)
+.|++++|.++ .++..+..+++|+.|++++|..
T Consensus 206 ~~~L~~L~Ls~N~l~-------------~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 206 EETEIFFRCRENRIT-------------HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp --CCEEEECCSSCCC-------------CCCGGGGGSCTTEEEECCSSSC
T ss_pred cccceEEecCCCcce-------------ecCHHHhcCCCCCEEEeeCCcC
Confidence 99999999876 3456677799999999999874
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=9.1e-13 Score=111.46 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=88.4
Q ss_pred CCcccEEEeecCCCC--CCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCC-Cc
Q 047733 38 LKVCTAISLKNSNIS--ELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP-LP 113 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~ 113 (508)
++++++|++++|.+. .++... .+++|++|++.+|.+. .+ ..+..+++|++|++++|.++. +|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------------~~--~~~~~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT------------SI--ANLPKLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC------------CC--TTCCCCTTCCEEECCSSCCCSCTH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC------------Cc--hhhhcCCCCCEEECCCCcccchHH
Confidence 467888888888886 676653 7888888888874332 22 224677888888888888876 67
Q ss_pred hhhccCccccEEeccCCCCCC-c--cccCCCCCCcEEEccCCCchhhHH----HhccCCCCceEecc
Q 047733 114 SSLRLFQNLQTLSLDYCELGD-I--AIVGDLKTLVILTLRGSDMEKLVE----EIGQLTHLRLLDLS 173 (508)
Q Consensus 114 ~~~~~l~~L~~L~l~~~~l~~-~--~~i~~l~~L~~L~l~~~~i~~lp~----~~~~l~~L~~L~l~ 173 (508)
..+..+++|++|++++|.+++ + ..++.+++|++|++++|.++.+|. .+..+++|++|+++
T Consensus 82 ~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 767778888888888888776 3 667777888888888877775553 46677777777764
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=6.6e-13 Score=112.31 Aligned_cols=107 Identities=21% Similarity=0.182 Sum_probs=69.1
Q ss_pred CCCccEEEecCCcCC--CCchhhccCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchh-hHHHhccCCCCceEec
Q 047733 96 MRELRVLDFARMHLL--PLPSSLRLFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEK-LVEEIGQLTHLRLLDL 172 (508)
Q Consensus 96 l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l 172 (508)
.++|+.|++++|.++ .+|..+..+++|++|++++|.++....++.+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 356677777777666 5666666677777777777766655556666777777777776665 6655566777777777
Q ss_pred cCCCCCCccCh-hhhhcCCCCcEEEeecCCCc
Q 047733 173 SNCFNLKVIPP-NVISSLSQLEELYIGESPIM 203 (508)
Q Consensus 173 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 203 (508)
++|. +..++. ..+..+++|++|++++|.++
T Consensus 96 s~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 96 SGNK-IKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp TTSC-CCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCc-CCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 7765 554431 22566677777777666554
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1.9e-12 Score=112.77 Aligned_cols=123 Identities=17% Similarity=0.230 Sum_probs=61.3
Q ss_pred CcccEEEeecCCCCCCCCCCCCC-CCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh-h
Q 047733 39 KVCTAISLKNSNISELPQVFECP-QLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS-L 116 (508)
Q Consensus 39 ~~lr~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~ 116 (508)
.+++.|++++|.+..++.+..+. +|++|++++|.+.. + .. +..+++|++|++++|.++.+|.. +
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~------------~-~~-l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK------------L-DG-FPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE------------E-CC-CCCCSSCCEEECCSSCCCEECSCHH
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc------------c-cc-cccCCCCCEEECCCCcccccCcchh
Confidence 44566666666665554444333 55555555532221 1 11 24555555555555555554432 2
Q ss_pred ccCccccEEeccCCCCCC-cc--ccCCCCCCcEEEccCCCchhhHHH----hccCCCCceEeccCC
Q 047733 117 RLFQNLQTLSLDYCELGD-IA--IVGDLKTLVILTLRGSDMEKLVEE----IGQLTHLRLLDLSNC 175 (508)
Q Consensus 117 ~~l~~L~~L~l~~~~l~~-~~--~i~~l~~L~~L~l~~~~i~~lp~~----~~~l~~L~~L~l~~~ 175 (508)
..+++|++|++++|.++. +. .++.+++|++|++++|.+..+|.. +..+++|+.|+++.|
T Consensus 85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 555555555555555544 22 445555555555555555444432 444555555555443
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1.7e-12 Score=113.12 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=82.3
Q ss_pred CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-c
Q 047733 57 VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-I 135 (508)
Q Consensus 57 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~ 135 (508)
...+++|+.|++.+|.+. .++. +....++|++|++++|.++.+ ..+..+++|++|++++|.++. +
T Consensus 15 ~~~~~~L~~L~l~~n~l~------------~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP------------VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp EECTTSCEEEECTTSCCC------------SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEEC
T ss_pred cCCcCCceEEEeeCCCCc------------hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccC
Confidence 335667777777773322 2222 212233777777777777665 456677777777777777666 4
Q ss_pred cc-cCCCCCCcEEEccCCCchhhHH--HhccCCCCceEeccCCCCCCccChh---hhhcCCCCcEEEeecCCC
Q 047733 136 AI-VGDLKTLVILTLRGSDMEKLVE--EIGQLTHLRLLDLSNCFNLKVIPPN---VISSLSQLEELYIGESPI 202 (508)
Q Consensus 136 ~~-i~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~ 202 (508)
.. ++.+++|++|++++|.+..+|. .+..+++|++|++++|. +..++.. .+..+++|+.|++..+..
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 33 3667777777777777766665 56677777777777766 4555542 356677777777666543
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.31 E-value=2.4e-12 Score=137.18 Aligned_cols=158 Identities=17% Similarity=0.243 Sum_probs=98.2
Q ss_pred CCcccEEEeecCCCCCCCCCC-CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhh
Q 047733 38 LKVCTAISLKNSNISELPQVF-ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSL 116 (508)
Q Consensus 38 ~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~ 116 (508)
.+.+++|++.++.+...+... ....|+.+.+.. +.. ..+... ++...|..+.+|++|++++|.+..+|..+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~-----~~~--~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 243 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDE-----DDD--IENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANI 243 (727)
T ss_dssp ----------------------------------------------------------CCCCCCEEECTTSCCSCCCGGG
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccC-----ccc--ccccee-cChhhhccCCCCcEEECCCCCCCCCChhh
Confidence 356889999888886654322 333333333332 211 012222 44445688999999999999999999888
Q ss_pred ccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEE
Q 047733 117 RLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEEL 195 (508)
Q Consensus 117 ~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 195 (508)
..+++|++|+|++|.++. |..++++.+|++|+|++|.++.+|..++.+++|++|+|++|. +..+|.. ++.+++|+.|
T Consensus 244 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L 321 (727)
T 4b8c_D 244 FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFL 321 (727)
T ss_dssp GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCE
T ss_pred cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEE
Confidence 899999999999999888 788899999999999999999899889999999999999987 7788887 7899999999
Q ss_pred EeecCCCccc
Q 047733 196 YIGESPIMWG 205 (508)
Q Consensus 196 ~l~~~~~~~~ 205 (508)
++++|.+++.
T Consensus 322 ~L~~N~l~~~ 331 (727)
T 4b8c_D 322 GVEGNPLEKQ 331 (727)
T ss_dssp ECTTSCCCSH
T ss_pred eCCCCccCCC
Confidence 9999988643
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.2e-11 Score=109.35 Aligned_cols=104 Identities=22% Similarity=0.368 Sum_probs=51.2
Q ss_pred CccEEEecCCcCCCCchhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHH-HhccCCCCceEeccC
Q 047733 98 ELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSN 174 (508)
Q Consensus 98 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~ 174 (508)
+|++|++++|.++.+|..+..+++|++|++++|.++. +..+..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 4445555555554444445555555555555555444 2334455555555555555544432 344555555555555
Q ss_pred CCCCCccChhhhhcCCCCcEEEeecCCC
Q 047733 175 CFNLKVIPPNVISSLSQLEELYIGESPI 202 (508)
Q Consensus 175 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 202 (508)
|. +..++...+..+++|+.|++++|.+
T Consensus 112 N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 112 ND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 44 4444443344555555555555443
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=8.9e-12 Score=110.17 Aligned_cols=122 Identities=18% Similarity=0.265 Sum_probs=74.9
Q ss_pred cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCCh-hhhhCCCCccEEEecCCcCCCC-chhhccC
Q 047733 42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPD-KFFTGMRELRVLDFARMHLLPL-PSSLRLF 119 (508)
Q Consensus 42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l 119 (508)
+.++++++.+..+|... .++|++|++.+|.+. .++. .+|..+++|++|++++|.++.+ |..|..+
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 77 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELG------------RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCC------------SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCC------------ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc
Confidence 56777777776666533 236777777763322 2222 2346667777777777777654 4566667
Q ss_pred ccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhh-HHHhccCCCCceEeccCCC
Q 047733 120 QNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKL-VEEIGQLTHLRLLDLSNCF 176 (508)
Q Consensus 120 ~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~ 176 (508)
++|++|++++|+++. +..+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 777777777776665 24466666677777766666644 4445566666666666655
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=2.2e-11 Score=107.59 Aligned_cols=126 Identities=16% Similarity=0.188 Sum_probs=98.9
Q ss_pred cEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch--hhccCccccEEeccCCCCCC--ccccC
Q 047733 64 KYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS--SLRLFQNLQTLSLDYCELGD--IAIVG 139 (508)
Q Consensus 64 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~l~~--~~~i~ 139 (508)
++++++++.. ..+|..+ ..++++|++++|.++.++. .+..+++|++|++++|.++. +..+.
T Consensus 11 ~~l~~s~~~l------------~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 75 (192)
T 1w8a_A 11 TTVDCTGRGL------------KEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75 (192)
T ss_dssp TEEECTTSCC------------SSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT
T ss_pred CEEEcCCCCc------------CcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC
Confidence 6777777433 4444433 2378999999999988775 38899999999999999887 57888
Q ss_pred CCCCCcEEEccCCCchhhHH-HhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccc
Q 047733 140 DLKTLVILTLRGSDMEKLVE-EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWG 205 (508)
Q Consensus 140 ~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 205 (508)
.+++|++|++++|.++.++. .+..+++|++|++++|. +..+++..+..+++|++|++++|.+...
T Consensus 76 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 99999999999998887764 37788999999999987 6666444478899999999999887633
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=4.1e-11 Score=105.88 Aligned_cols=121 Identities=21% Similarity=0.339 Sum_probs=101.7
Q ss_pred cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCc
Q 047733 42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQ 120 (508)
Q Consensus 42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~ 120 (508)
+.++++++.+..+|... .++|++|++.+| .+..+|.. |..+++|++|++++|.++.++ ..|..++
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n------------~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~ 78 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGN------------QFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMT 78 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSS------------CCCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCC------------cCchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCC
Confidence 57888899888888643 468999999984 34455643 488999999999999998776 5689999
Q ss_pred cccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCC
Q 047733 121 NLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCF 176 (508)
Q Consensus 121 ~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~ 176 (508)
+|++|++++|.++. +..+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 99999999999887 46789999999999999999988764 7789999999999987
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=2.5e-12 Score=136.96 Aligned_cols=131 Identities=19% Similarity=0.162 Sum_probs=105.1
Q ss_pred CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccc
Q 047733 59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAI 137 (508)
Q Consensus 59 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~ 137 (508)
.+++|+.|++++ +.+..+|..+| ++++|++|+|++|.++.+|..++++++|++|+|++|.++. |..
T Consensus 222 ~l~~L~~L~Ls~------------n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~ 288 (727)
T 4b8c_D 222 DDQLWHALDLSN------------LQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288 (727)
T ss_dssp CCCCCCEEECTT------------SCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS
T ss_pred cCCCCcEEECCC------------CCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh
Confidence 789999999998 34446666664 7999999999999999999999999999999999999888 788
Q ss_pred cCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCC-CCcEEEeecCCCc
Q 047733 138 VGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLS-QLEELYIGESPIM 203 (508)
Q Consensus 138 i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~ 203 (508)
++.+.+|++|+|++|.+..+|..++.+++|++|+|++|.....+|.. +..+. .+..+++.+|.++
T Consensus 289 ~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCccc
Confidence 99999999999999999999988999999999999998833344433 33321 1123456666554
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=6.1e-11 Score=103.26 Aligned_cols=122 Identities=17% Similarity=0.277 Sum_probs=77.2
Q ss_pred cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch-hhccCc
Q 047733 42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS-SLRLFQ 120 (508)
Q Consensus 42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~ 120 (508)
+.+++.++.+..+|.. ..++|++|++.+|. ...++...|..+++|++|++++|.++.++. .+..++
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 76 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNK------------LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT 76 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEECCSSC------------CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEeCCCc------------ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC
Confidence 5667777776666642 23577777777632 233444444667777777777777766553 356677
Q ss_pred cccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCC
Q 047733 121 NLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCF 176 (508)
Q Consensus 121 ~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~ 176 (508)
+|++|++++|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 77777777777666 3 3456677777777777766666544 3556677777776665
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=4.2e-11 Score=123.64 Aligned_cols=150 Identities=17% Similarity=0.190 Sum_probs=106.5
Q ss_pred hhhCCCCccEEE-ecCCcCCCCch------hhccC--ccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHHHhc
Q 047733 92 FFTGMRELRVLD-FARMHLLPLPS------SLRLF--QNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVEEIG 162 (508)
Q Consensus 92 ~~~~l~~L~~L~-l~~~~~~~l~~------~~~~l--~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~~~~ 162 (508)
.++.+++|+.|+ ++.+.+..++. .+..+ ..|+.|++++|.++.++.++.+++|++|++++|.++.+|..++
T Consensus 404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~ 483 (567)
T 1dce_A 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALA 483 (567)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGG
T ss_pred HHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhh
Confidence 347778888887 55554332221 11111 2588888888888873238888888888888888888888888
Q ss_pred cCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCccCC
Q 047733 163 QLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKTLP 242 (508)
Q Consensus 163 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 242 (508)
.+++|++|++++|. +..+| . ++.+++|+.|++++|.++... .+..++.+++|+.|++++|.....|
T Consensus 484 ~l~~L~~L~Ls~N~-l~~lp-~-l~~l~~L~~L~Ls~N~l~~~~-----------~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 484 ALRCLEVLQASDNA-LENVD-G-VANLPRLQELLLCNNRLQQSA-----------AIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GCTTCCEEECCSSC-CCCCG-G-GTTCSSCCEEECCSSCCCSSS-----------TTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred cCCCCCEEECCCCC-CCCCc-c-cCCCCCCcEEECCCCCCCCCC-----------CcHHHhcCCCCCEEEecCCcCCCCc
Confidence 88888888888877 66676 3 788888888888888776221 1466788888888888888866666
Q ss_pred CCC----ccCCCccEEE
Q 047733 243 RDL----SFFKMLQRYS 255 (508)
Q Consensus 243 ~~l----~~~~~L~~L~ 255 (508)
... ..+++|+.|.
T Consensus 550 ~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 550 GIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCTTHHHHHCTTCSEEE
T ss_pred cHHHHHHHHCcccCccC
Confidence 543 3467777764
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=1.1e-12 Score=116.74 Aligned_cols=106 Identities=23% Similarity=0.304 Sum_probs=51.3
Q ss_pred hCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEec
Q 047733 94 TGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDL 172 (508)
Q Consensus 94 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l 172 (508)
..+++|++|++++|.++.+| .+..+++|++|++++|.++. |..+..+++|++|++++|.++.+| .+..+++|++|++
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEE
T ss_pred hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEEC
Confidence 44555555555555554444 44455555555555555444 333344455555555555554444 3444555555555
Q ss_pred cCCCCCCccCh-hhhhcCCCCcEEEeecCCC
Q 047733 173 SNCFNLKVIPP-NVISSLSQLEELYIGESPI 202 (508)
Q Consensus 173 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 202 (508)
++|. +..++. ..+..+++|++|++++|.+
T Consensus 123 ~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 123 SNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 5544 333332 1244555555555555443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=1.3e-10 Score=101.21 Aligned_cols=107 Identities=23% Similarity=0.387 Sum_probs=83.4
Q ss_pred CCCccEEEecCCcCCCCch-hhccCccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEe
Q 047733 96 MRELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLD 171 (508)
Q Consensus 96 l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~ 171 (508)
..+|++|++++|.++.++. .+..+++|++|++++|.++. + ..++.+++|++|++++|.++.+|.. +..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 3678888888888887664 46788888888888888877 4 4567888888888888888877654 56788888888
Q ss_pred ccCCCCCCccChhhhhcCCCCcEEEeecCCCc
Q 047733 172 LSNCFNLKVIPPNVISSLSQLEELYIGESPIM 203 (508)
Q Consensus 172 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 203 (508)
+++|. +..++...+..+++|++|++++|.+.
T Consensus 107 l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 107 LDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 88876 66777765577888888888887765
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=8.4e-11 Score=121.40 Aligned_cols=123 Identities=20% Similarity=0.191 Sum_probs=104.2
Q ss_pred CccEEEecCCcCCCCchhhccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCC
Q 047733 98 ELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCF 176 (508)
Q Consensus 98 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 176 (508)
.|++|++++|.++.+|. ++.+++|++|++++|.++. |..++.+++|++|++++|.++.+| .++.+++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 58999999999999987 9999999999999999988 789999999999999999999998 89999999999999987
Q ss_pred CCCcc--ChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEE
Q 047733 177 NLKVI--PPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEI 233 (508)
Q Consensus 177 ~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 233 (508)
+..+ |.. ++.+++|+.|++++|.++...+ .....+..+++|+.|++
T Consensus 520 -l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~---------~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 -LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG---------IQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS---------CTTHHHHHCTTCSEEEC
T ss_pred -CCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc---------HHHHHHHHCcccCccCC
Confidence 6666 555 8999999999999998874432 12223345778888763
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=2.2e-12 Score=114.79 Aligned_cols=141 Identities=18% Similarity=0.273 Sum_probs=108.3
Q ss_pred ccEEEeecC--CCCCCCC-CCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchhhc
Q 047733 41 CTAISLKNS--NISELPQ-VFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSSLR 117 (508)
Q Consensus 41 lr~L~l~~~--~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~ 117 (508)
++...+.+. .+..++. +..+++|++|++++|.+ ..+| . +..+++|++|++++|.++.+|..+.
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l------------~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~ 90 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI------------EKIS-S-LSGMENLRILSLGRNLIKKIENLDA 90 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE------------SCCC-C-HHHHTTCCEEEEEEEEECSCSSHHH
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC------------cccc-c-cccCCCCCEEECCCCCcccccchhh
Confidence 444455443 2334443 33899999999998433 3345 3 4789999999999999999998888
Q ss_pred cCccccEEeccCCCCCCccccCCCCCCcEEEccCCCchhhHH--HhccCCCCceEeccCCCCCCccC----------hhh
Q 047733 118 LFQNLQTLSLDYCELGDIAIVGDLKTLVILTLRGSDMEKLVE--EIGQLTHLRLLDLSNCFNLKVIP----------PNV 185 (508)
Q Consensus 118 ~l~~L~~L~l~~~~l~~~~~i~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~~----------~~~ 185 (508)
.+++|++|++++|+++.+..++.+++|++|++++|.++.++. .+..+++|++|++++|. +...+ ...
T Consensus 91 ~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHH
T ss_pred cCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHH
Confidence 889999999999999884478889999999999999887664 68899999999999987 43221 123
Q ss_pred hhcCCCCcEEE
Q 047733 186 ISSLSQLEELY 196 (508)
Q Consensus 186 l~~l~~L~~L~ 196 (508)
+..+++|+.|+
T Consensus 170 ~~~l~~L~~Ld 180 (198)
T 1ds9_A 170 VKRLPNLKKLD 180 (198)
T ss_dssp HHHCSSCSEEC
T ss_pred HHhCCCcEEEC
Confidence 67888899886
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=4.5e-10 Score=97.33 Aligned_cols=100 Identities=22% Similarity=0.400 Sum_probs=50.0
Q ss_pred cEEEecCCcCCCCchhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCCC
Q 047733 100 RVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNCF 176 (508)
Q Consensus 100 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~ 176 (508)
+.++++++.++.+|..+. ++|++|++++|.++. +..++++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 445555555555554332 445555555555444 24455555555555555555544433 2455555555555544
Q ss_pred CCCccChhhhhcCCCCcEEEeecCCC
Q 047733 177 NLKVIPPNVISSLSQLEELYIGESPI 202 (508)
Q Consensus 177 ~~~~~~~~~l~~l~~L~~L~l~~~~~ 202 (508)
+..++...+..+++|++|++++|.+
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred -cceeCHHHhccccCCCEEEeCCCCc
Confidence 4444443344555555555555543
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=4.7e-10 Score=96.85 Aligned_cols=102 Identities=23% Similarity=0.320 Sum_probs=55.7
Q ss_pred ccEEEecCCcCCCCchhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH-hccCCCCceEeccCC
Q 047733 99 LRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE-IGQLTHLRLLDLSNC 175 (508)
Q Consensus 99 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~ 175 (508)
.+.++++++.++.+|..+. ++|++|++++|.++. +..+..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3455555555555554332 455566666655554 24455556666666666655555433 345566666666655
Q ss_pred CCCCccChhhhhcCCCCcEEEeecCCCc
Q 047733 176 FNLKVIPPNVISSLSQLEELYIGESPIM 203 (508)
Q Consensus 176 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 203 (508)
. +..++...+..+++|++|++++|.+.
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 4 44555433455566666666555443
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=9.8e-10 Score=105.84 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=42.6
Q ss_pred CCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCcc-EEEEecccCccCC
Q 047733 164 LTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLT-SLEILIEDEKTLP 242 (508)
Q Consensus 164 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~ 242 (508)
+++|+.+++..|. +..++...+..+.+|+.+.+..+ +.. . ....+..+++|+ .+.+.. ....++
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~-I-----------~~~aF~~~~~L~~~l~l~~-~l~~I~ 289 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKT-I-----------GQRVFSNCGRLAGTLELPA-SVTAIE 289 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCE-E-----------CTTTTTTCTTCCEEEEECT-TCCEEC
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cce-e-----------hHHHhhCChhccEEEEEcc-cceEEc
Confidence 5666666666654 56666655666666666666554 221 1 113355566666 666655 322332
Q ss_pred -CCCccCCCccEEEEE
Q 047733 243 -RDLSFFKMLQRYSIL 257 (508)
Q Consensus 243 -~~l~~~~~L~~L~i~ 257 (508)
..+..+++|+.+.+.
T Consensus 290 ~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLAT 305 (329)
T ss_dssp TTTTTTCTTEEEEEEC
T ss_pred hhhhhCCccCCEEEeC
Confidence 334556666666553
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=1.8e-09 Score=93.55 Aligned_cols=101 Identities=18% Similarity=0.296 Sum_probs=51.7
Q ss_pred cEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCchh-hccCc
Q 047733 42 TAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPSS-LRLFQ 120 (508)
Q Consensus 42 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~ 120 (508)
+.++++++.+..+|... .++|++|++++| .+..++...|.++++|++|++++|.++.+|.. |..++
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 81 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNN------------QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSS------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCC------------CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc
Confidence 45566666665555432 255556665552 22222222235555556666665555555432 34555
Q ss_pred cccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCch
Q 047733 121 NLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDME 155 (508)
Q Consensus 121 ~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i~ 155 (508)
+|++|++++|+++. + ..+..+++|++|++++|.+.
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 55555555555554 3 23555555555555555443
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=5e-09 Score=90.32 Aligned_cols=101 Identities=18% Similarity=0.273 Sum_probs=63.7
Q ss_pred ccEEEeecCCCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCch-hhccC
Q 047733 41 CTAISLKNSNISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLPS-SLRLF 119 (508)
Q Consensus 41 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l 119 (508)
.+.++++++.+..+|... .++|++|++++| .+..++...|.++++|++|++++|.++.+|. .|..+
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N------------~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 77 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDN------------QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSS------------CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCC------------cCCccChhhhcCcccCCEEECCCCCcCccChhhccCC
Confidence 356777777777776533 366777777763 2333333334667777777777777766654 34667
Q ss_pred ccccEEeccCCCCCC-c-cccCCCCCCcEEEccCCCc
Q 047733 120 QNLQTLSLDYCELGD-I-AIVGDLKTLVILTLRGSDM 154 (508)
Q Consensus 120 ~~L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~~i 154 (508)
++|++|++++|+++. + ..+..+++|++|++++|.+
T Consensus 78 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 777777777777666 3 3466677777777777644
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.88 E-value=6.2e-10 Score=108.74 Aligned_cols=163 Identities=18% Similarity=0.170 Sum_probs=102.6
Q ss_pred CCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCC--CchhhccCccccEEeccCCCCCC--c
Q 047733 60 CPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLP--LPSSLRLFQNLQTLSLDYCELGD--I 135 (508)
Q Consensus 60 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~l~~--~ 135 (508)
++.|+.|++++|.+..... ..+...+.....+|+.|++++|.++. +......+.+|+.|++++|.+++ .
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~-------~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~ 143 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKC-------TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC 143 (372)
T ss_dssp HTTCCEEECTTSCCCHHHH-------HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH
T ss_pred HhhCCEEEecCCCCCHHHH-------HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH
Confidence 4678888888732211100 00111111123688888888888763 22333346678888888888775 2
Q ss_pred ccc-----CCCCCCcEEEccCCCch-----hhHHHhccCCCCceEeccCCCCCCccC----hhhhhcCCCCcEEEeecCC
Q 047733 136 AIV-----GDLKTLVILTLRGSDME-----KLVEEIGQLTHLRLLDLSNCFNLKVIP----PNVISSLSQLEELYIGESP 201 (508)
Q Consensus 136 ~~i-----~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~ 201 (508)
..+ ...++|++|++++|.++ .++..+..+++|++|++++|. +++.. ...+...++|++|++++|.
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 333 34678888888888776 355556778888888888877 54322 1124567788888888887
Q ss_pred CccccccCcCCCCcccchhhccCCCCccEEEEecccC
Q 047733 202 IMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDE 238 (508)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 238 (508)
++... ...+...+...++|+.|++++|..
T Consensus 223 i~~~g--------~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 223 AGDTA--------ALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp CCHHH--------HHHHHHHHHHCSSCCEEECTTSSC
T ss_pred CCHHH--------HHHHHHHHHhCCCCCEEeccCCCC
Confidence 75221 113445566677888888888763
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=1e-08 Score=98.71 Aligned_cols=250 Identities=13% Similarity=0.090 Sum_probs=149.4
Q ss_pred CCcccEEEeecCCC-CCCCCCCC-CCCCcEEEcCCCCCC-------CCCc-ccCCCCCCCCChhhhhC--------CCCc
Q 047733 38 LKVCTAISLKNSNI-SELPQVFE-CPQLKYFHIANDPSR-------RIPV-HIANDPSRRIPDKFFTG--------MREL 99 (508)
Q Consensus 38 ~~~lr~L~l~~~~~-~~l~~~~~-~~~L~~L~l~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~--------l~~L 99 (508)
..++++|.+.++-- .++..+.. +++|++|++++|.+. .++. .+.......+|..+|.+ +.+|
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L 103 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence 45688888886421 12222222 788888888887665 2211 01111222577777888 9999
Q ss_pred cEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCc----hhhH-HHhccCCCC----
Q 047733 100 RVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDM----EKLV-EEIGQLTHL---- 167 (508)
Q Consensus 100 ~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i----~~lp-~~~~~l~~L---- 167 (508)
+.+++.. .++.++ ..|..|++|+.+++.++.+.. ...+..+.++.++....... ..+. ..+..+.+|
T Consensus 104 ~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i 182 (329)
T 3sb4_A 104 EKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTI 182 (329)
T ss_dssp CC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEE
T ss_pred cEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeE
Confidence 9999998 777766 568899999999999888765 36677777777776555211 0111 012233333
Q ss_pred ----------------------ceEeccCCCCCCccCh-hhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccC
Q 047733 168 ----------------------RLLDLSNCFNLKVIPP-NVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNN 224 (508)
Q Consensus 168 ----------------------~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 224 (508)
..+.+.+. +..... .....+++|+.+++..|.++.-. ...+..
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~------------~~aF~~ 248 (329)
T 3sb4_A 183 QVGAMGKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTNATTIP------------DFTFAQ 248 (329)
T ss_dssp EECTTCCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBCCCEEC------------TTTTTT
T ss_pred EecCCCcHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCCcceec------------HhhhhC
Confidence 33333332 111111 11124899999999987765221 145788
Q ss_pred CCCccEEEEecccCccCCC-CCccCCCcc-EEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEE
Q 047733 225 LSKLTSLEILIEDEKTLPR-DLSFFKMLQ-RYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELC 302 (508)
Q Consensus 225 l~~L~~L~l~~~~~~~~~~-~l~~~~~L~-~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~ 302 (508)
+++|+.+++..+ ...++. .+..+.+|+ .+.+.. . . ..........+++|+.++
T Consensus 249 ~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~-l----------------------~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 249 KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S-V----------------------TAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T-C----------------------CEECTTTTTTCTTEEEEE
T ss_pred CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c-c----------------------eEEchhhhhCCccCCEEE
Confidence 999999999876 444444 457788888 777642 1 0 111233344678899999
Q ss_pred ecCCCCccccccCCcCCCCCCCcEEEE
Q 047733 303 LGGSLDMKSVLYGSHGEGFPQLKHLEV 329 (508)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~~~L~~L~l 329 (508)
+.+. .++.+.... ..++++|+.++.
T Consensus 304 l~~n-~i~~I~~~a-F~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGD-KITTLGDEL-FGNGVPSKLIYK 328 (329)
T ss_dssp ECSS-CCCEECTTT-TCTTCCCCEEEC
T ss_pred eCCC-ccCccchhh-hcCCcchhhhcc
Confidence 9543 455554332 356788887753
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.74 E-value=2.7e-09 Score=104.17 Aligned_cols=155 Identities=14% Similarity=0.085 Sum_probs=112.9
Q ss_pred CCCcccEEEeecCCCCCCC-----CCC--CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcC
Q 047733 37 ALKVCTAISLKNSNISELP-----QVF--ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHL 109 (508)
Q Consensus 37 ~~~~lr~L~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 109 (508)
.++.++.|++++|.+.... ... ..++|++|++++|.+ .......++..+++|+.|++++|.+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-----------~~~~~~~l~~~L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-----------DPAGLRTLLPVFLRARKLGLQLNSL 138 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-----------CHHHHHHTHHHHHTEEEEECCSSCC
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-----------CHHHHHHHHHHHHhccHhhcCCCCC
Confidence 3578999999999985321 111 347999999999422 2222233445567899999999998
Q ss_pred CCC-----chhh-ccCccccEEeccCCCCCC--c----cccCCCCCCcEEEccCCCch-----hhHHHhccCCCCceEec
Q 047733 110 LPL-----PSSL-RLFQNLQTLSLDYCELGD--I----AIVGDLKTLVILTLRGSDME-----KLVEEIGQLTHLRLLDL 172 (508)
Q Consensus 110 ~~l-----~~~~-~~l~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l 172 (508)
+.. ...+ ....+|++|++++|.+++ . ..+...++|++|++++|.+. .++..+...++|++|++
T Consensus 139 ~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 139 GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218 (372)
T ss_dssp CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEEC
Confidence 732 2222 246789999999999875 2 34577899999999999887 34566788899999999
Q ss_pred cCCCCCCccCh----hhhhcCCCCcEEEeecCCCc
Q 047733 173 SNCFNLKVIPP----NVISSLSQLEELYIGESPIM 203 (508)
Q Consensus 173 ~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~ 203 (508)
++|. ++.... ..+...++|++|++++|.+.
T Consensus 219 s~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 219 AYNG-AGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 9987 554321 12456799999999999875
No 143
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.70 E-value=1.6e-09 Score=92.33 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=46.9
Q ss_pred cCCeEEEcCCCCcceecchhhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCcccccccc
Q 047733 381 QLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCT 460 (508)
Q Consensus 381 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 460 (508)
+|++|++++|. +++.... .+..+++|++|++++|..+++-....... ....+++|++|++++|+++++-..
T Consensus 62 ~L~~LDLs~~~-Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~-------~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQ-------LENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CEEEEEEESCC-CCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHT-------CHHHHHHCCEEEEESCTTCCHHHH
T ss_pred eEeEEeCcCCC-ccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHh-------cccccCCCCEEEcCCCCcCCHHHH
Confidence 45555555554 4443221 22455666666666665554433211000 000134566666666666666554
Q ss_pred CccccccCCccEEEEeeCCCcc
Q 047733 461 GDLHFEFPSLEKLRILECPQVK 482 (508)
Q Consensus 461 ~~~~~~~p~L~~L~i~~C~~l~ 482 (508)
..+. .+|+|+.|++++||+++
T Consensus 133 ~~L~-~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 133 IALH-HFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHGG-GCTTCCEEEEESCTTCC
T ss_pred HHHh-cCCCCCEEECCCCCCCC
Confidence 4443 45667777777776654
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.64 E-value=6.8e-09 Score=88.51 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=46.4
Q ss_pred CcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecchhhhh---ccCCCcEEeeccccchhhhhccccCCc
Q 047733 354 VLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPLVIGR---GLQQLQFIEVTECQNLDVIFAAERGDE 430 (508)
Q Consensus 354 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~---~l~~L~~L~i~~c~~L~~i~~~~~~~~ 430 (508)
.|+.|++++|. +++.... ....+++|++|++++|..+++-....+.. .+++|++|++++|+++++--..
T Consensus 62 ~L~~LDLs~~~-Itd~GL~--~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~----- 133 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFD--HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII----- 133 (176)
T ss_dssp CEEEEEEESCC-CCGGGGG--GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-----
T ss_pred eEeEEeCcCCC-ccHHHHH--HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-----
Confidence 34555555543 3332211 12345666666666666665543222211 1245666666666666554321
Q ss_pred CCCCCCceeeccccCeeEcCCCcccccc
Q 047733 431 SSNSNTQVIELTQLTILELCYLPQLTSF 458 (508)
Q Consensus 431 ~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 458 (508)
.+..+++|++|++++|+++++.
T Consensus 134 ------~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 134 ------ALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp ------HGGGCTTCCEEEEESCTTCCCH
T ss_pred ------HHhcCCCCCEEECCCCCCCCch
Confidence 2224667777777777766654
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.63 E-value=2.8e-06 Score=83.61 Aligned_cols=252 Identities=13% Similarity=0.095 Sum_probs=150.9
Q ss_pred CCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHHH
Q 047733 84 PSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVEE 160 (508)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~~ 160 (508)
.+..++...|.+. +|+.+++..+ ++.+. ..|.++ +|+.+.+.. .++. ...+.++.+|+.+++..+.++.++..
T Consensus 123 ~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~ 198 (401)
T 4fdw_A 123 SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS 198 (401)
T ss_dssp TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh
Confidence 3455666666764 7888888766 55544 345554 588888875 4554 36788888999999988888888766
Q ss_pred hccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCcc
Q 047733 161 IGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEKT 240 (508)
Q Consensus 161 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 240 (508)
...+.+|+.+.+..+ +..++...+..+++|+.+.+..+-.... ...+.. .+|+.+.+..+ ...
T Consensus 199 aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~I~-------------~~aF~~-~~L~~i~lp~~-i~~ 261 (401)
T 4fdw_A 199 TFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVSTIG-------------QEAFRE-SGITTVKLPNG-VTN 261 (401)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCEEC-------------TTTTTT-CCCSEEEEETT-CCE
T ss_pred hEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccCcc-------------cccccc-CCccEEEeCCC-ccE
Confidence 555788998888743 6777776678888899888875321100 122333 57888887433 233
Q ss_pred C-CCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCC
Q 047733 241 L-PRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGE 319 (508)
Q Consensus 241 ~-~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 319 (508)
+ ...+..+++|+.+.+...... ..............+++|+.+.+.. .++.+.... ..
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~------------------~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~a-F~ 320 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFN------------------DDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGL-LG 320 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCC------------------CCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTT-TT
T ss_pred EChhHhhCCCCCCEEEeCCcccc------------------CCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhh-hc
Confidence 3 334567788888877532210 0000012233344577888888753 354443322 35
Q ss_pred CCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCccccccc-ccCCeEEEcC
Q 047733 320 GFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESF-CQLRDMRVNG 389 (508)
Q Consensus 320 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~-~~L~~L~l~~ 389 (508)
++++|+.+.+.. +++.+. .. .-..+ +|+.+.+.+.. +..+....+ ..+ .+++.|++-.
T Consensus 321 ~c~~L~~l~lp~--~l~~I~-~~-----aF~~~-~L~~l~l~~n~-~~~l~~~~F--~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 321 GNRKVTQLTIPA--NVTQIN-FS-----AFNNT-GIKEVKVEGTT-PPQVFEKVW--YGFPDDITVIRVPA 379 (401)
T ss_dssp TCCSCCEEEECT--TCCEEC-TT-----SSSSS-CCCEEEECCSS-CCBCCCSSC--CCSCTTCCEEEECG
T ss_pred CCCCccEEEECc--cccEEc-HH-----hCCCC-CCCEEEEcCCC-Ccccccccc--cCCCCCccEEEeCH
Confidence 678888888854 355542 11 11234 78888887742 333322211 223 3566776654
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.62 E-value=7.4e-07 Score=87.79 Aligned_cols=255 Identities=15% Similarity=0.144 Sum_probs=108.8
Q ss_pred CcccEEEeecCCCCCCCCCC--CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hh
Q 047733 39 KVCTAISLKNSNISELPQVF--ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SS 115 (508)
Q Consensus 39 ~~lr~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~ 115 (508)
+.++.+.+.. .+..++... .+ +|+.+.+..+ +..++...|.+. +|+.+.+.. .++.+. ..
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-------------i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~a 175 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-------------LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDI 175 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-------------CCEECTTTTTTC-CCCEEECCT-TCCEECSST
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-------------ccEECHHhcCCC-CceEEEeCC-CccEehHHH
Confidence 3445555543 233333321 33 5777776541 333344444442 455555554 333332 34
Q ss_pred hccCccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCCCCc
Q 047733 116 LRLFQNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLE 193 (508)
Q Consensus 116 ~~~l~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 193 (508)
|..|.+|+.+++.++.++. +.......+|+.+.+..+ ++.++ ..+.+|++|+.+++..+ +..++...+.. .+|+
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGIT 251 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCS
T ss_pred hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCcc
Confidence 5555555555555555444 221112345555555432 33333 22345555555555442 34444432333 4455
Q ss_pred EEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCc-----cC-CCCCccCCCccEEEEEecCcccCCCC
Q 047733 194 ELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEK-----TL-PRDLSFFKMLQRYSILIGDQWAWDSP 267 (508)
Q Consensus 194 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~-~~~l~~~~~L~~L~i~~~~~~~~~~~ 267 (508)
.+.+..+ +..- ....+..+++|+.+.+.++... .+ ...+..+++|+.+.+...-..-....
T Consensus 252 ~i~lp~~-i~~I------------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~a 318 (401)
T 4fdw_A 252 TVKLPNG-VTNI------------ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGL 318 (401)
T ss_dssp EEEEETT-CCEE------------CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTT
T ss_pred EEEeCCC-ccEE------------ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhh
Confidence 5554321 1100 0123444555555555443321 11 12234445555444431100001122
Q ss_pred CCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCCCC-CCCcEEEEec
Q 047733 268 SDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGEGF-PQLKHLEVVE 331 (508)
Q Consensus 268 ~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~ 331 (508)
+..+.+|+.+.|... ...........+ +|+.+.+.+.. ...+.... ..++ ..++.+.+..
T Consensus 319 F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~~~-F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 319 LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT-PPQVFEKV-WYGFPDDITVIRVPA 379 (401)
T ss_dssp TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS-CCBCCCSS-CCCSCTTCCEEEECG
T ss_pred hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC-Cccccccc-ccCCCCCccEEEeCH
Confidence 233334444444211 112233334456 89999997652 22222211 2345 3678888865
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=7.8e-08 Score=93.19 Aligned_cols=91 Identities=23% Similarity=0.126 Sum_probs=51.7
Q ss_pred CCCCCChhhhhCCCCccEEEecC-CcCCCCc-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHH
Q 047733 84 PSRRIPDKFFTGMRELRVLDFAR-MHLLPLP-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVE 159 (508)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~ 159 (508)
....+|. +..+.+|+.|+|++ |.++.++ ..|..+++|++|+|++|.++. +..|+++++|++|+|++|.+..+|.
T Consensus 20 ~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 3444555 25566666666664 6666554 446666666666666666655 2455666666666666666665554
Q ss_pred HhccCCCCceEeccCCC
Q 047733 160 EIGQLTHLRLLDLSNCF 176 (508)
Q Consensus 160 ~~~~l~~L~~L~l~~~~ 176 (508)
.+.....|+.|++.+|.
T Consensus 98 ~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTTCSCCCCEEECCSSC
T ss_pred HHcccCCceEEEeeCCC
Confidence 43322236666666554
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.56 E-value=2e-07 Score=90.24 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=83.1
Q ss_pred cEEEeecC-CCCCCCCCCCCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccC
Q 047733 42 TAISLKNS-NISELPQVFECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLF 119 (508)
Q Consensus 42 r~L~l~~~-~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l 119 (508)
..++.+++ .+..+|.+..+++|+.|++++ ++.+..++...|.++.+|++|+|++|.++.++ ..|.++
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~-----------~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 79 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIEN-----------QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCS-----------CSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccC-----------CCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCC
Confidence 35688887 888899855889999999985 24555566555689999999999999999765 578999
Q ss_pred ccccEEeccCCCCCC-ccccCCCCCCcEEEccCCCch
Q 047733 120 QNLQTLSLDYCELGD-IAIVGDLKTLVILTLRGSDME 155 (508)
Q Consensus 120 ~~L~~L~l~~~~l~~-~~~i~~l~~L~~L~l~~~~i~ 155 (508)
++|++|+|++|+++. |..+.....|++|++.+|.+.
T Consensus 80 ~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 80 PRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred cCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 999999999999988 544433334999999999776
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.50 E-value=5.7e-06 Score=81.46 Aligned_cols=302 Identities=13% Similarity=0.114 Sum_probs=133.9
Q ss_pred CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--c
Q 047733 59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--I 135 (508)
Q Consensus 59 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~ 135 (508)
+|.+|+++.+.. .+..+...+|.++.+|+.+++..+ ++.+. ..|..+..|+.+.+... +.. .
T Consensus 69 ~c~~L~~i~lp~-------------~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 69 GCRKVTEIKIPS-------------TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp TCTTEEEEECCT-------------TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred CCCCceEEEeCC-------------CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence 788899988854 355666777888899999988755 44443 45667777777665432 111 1
Q ss_pred cccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCC
Q 047733 136 AIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEG 214 (508)
Q Consensus 136 ~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 214 (508)
..+..+..+....... +..+. ..+.++.+|+.+.+..+ ...++...+..+.+|+.+.+..+-..-.
T Consensus 134 ~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~I~--------- 200 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKIIR--------- 200 (394)
T ss_dssp TTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCEEC---------
T ss_pred eeeecccccccccCcc--ccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceEeC---------
Confidence 2222222222111111 11111 12445555555555432 2334443344555555554433211000
Q ss_pred cccchhhccCCCCccEEEEecccCccCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhc
Q 047733 215 RNASLDELNNLSKLTSLEILIEDEKTLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQ 294 (508)
Q Consensus 215 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~ 294 (508)
...+..+..|+.+.+..+.. ..........+|+.+.+......-..........++.+.+... ...........
T Consensus 201 ----~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~ 274 (394)
T 4fs7_A 201 ----DYCFAECILLENMEFPNSLY-YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYN 274 (394)
T ss_dssp ----TTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTT
T ss_pred ----chhhccccccceeecCCCce-EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCC-cceeecccccc
Confidence 01122223333322221110 0000011122333332211000000011111122222222111 11111222234
Q ss_pred ccceeEEEecCCCCccccccCCcCCCCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcc
Q 047733 295 LKGIKELCLGGSLDMKSVLYGSHGEGFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPL 374 (508)
Q Consensus 295 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~ 374 (508)
+..++.+..... .+ .......+.+|+.+.+.+ +++.+. .. .-..+.+|+++.+.. .++.+...
T Consensus 275 ~~~l~~~~~~~~----~i-~~~~F~~~~~L~~i~l~~--~i~~I~-~~-----aF~~c~~L~~i~lp~--~v~~I~~~-- 337 (394)
T 4fs7_A 275 CSGLKKVIYGSV----IV-PEKTFYGCSSLTEVKLLD--SVKFIG-EE-----AFESCTSLVSIDLPY--LVEEIGKR-- 337 (394)
T ss_dssp CTTCCEEEECSS----EE-CTTTTTTCTTCCEEEECT--TCCEEC-TT-----TTTTCTTCCEECCCT--TCCEECTT--
T ss_pred ccccceeccCce----ee-cccccccccccccccccc--ccceec-hh-----hhcCCCCCCEEEeCC--cccEEhHH--
Confidence 455666555321 11 111235677888887754 355441 11 122456788887753 34444322
Q ss_pred cccccccCCeEEEcCCCCcceecchhhhhccCCCcEEeec
Q 047733 375 AAESFCQLRDMRVNGCDKLKNVFPLVIGRGLQQLQFIEVT 414 (508)
Q Consensus 375 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~ 414 (508)
....+.+|+.+.+.. .++.++... ...+++|+.+++.
T Consensus 338 aF~~c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~lp 374 (394)
T 4fs7_A 338 SFRGCTSLSNINFPL--SLRKIGANA-FQGCINLKKVELP 374 (394)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTT-BTTCTTCCEEEEE
T ss_pred hccCCCCCCEEEECc--cccEehHHH-hhCCCCCCEEEEC
Confidence 224567788887754 467775533 3678888888885
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.42 E-value=1.4e-07 Score=91.34 Aligned_cols=56 Identities=25% Similarity=0.204 Sum_probs=29.2
Q ss_pred hhCCCCccEEEecCCcCCCCchhhccCccccEEeccCCCCCC--ccccC--CCCCCcEEEcc
Q 047733 93 FTGMRELRVLDFARMHLLPLPSSLRLFQNLQTLSLDYCELGD--IAIVG--DLKTLVILTLR 150 (508)
Q Consensus 93 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~--~~~i~--~l~~L~~L~l~ 150 (508)
+..+++|+.|+++++.-..++. + .+++|+.|++..|.+.. ...++ .+++|++|+|+
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3556666666666653122332 2 25566666666655543 23332 45666666653
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.36 E-value=1.1e-05 Score=79.28 Aligned_cols=313 Identities=11% Similarity=0.069 Sum_probs=155.7
Q ss_pred CCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhH-H
Q 047733 84 PSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLV-E 159 (508)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp-~ 159 (508)
.+..+...+|.++.+|+.+.+..+ ++.+. ..|.+|.+|+.+++..+ ++. ...+..+.+|+.+.+..+ +..+. .
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 344567777899999999999754 66554 56888999999998654 443 355667777777666543 22222 1
Q ss_pred HhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCcCCCCcccchhhccCCCCccEEEEecccCc
Q 047733 160 EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIEDEK 239 (508)
Q Consensus 160 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 239 (508)
.+..+..+....... ...+....+..+.+|+.+.+..+...- ....+..+.+|+.+.+..+-..
T Consensus 135 aF~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~~~~I-------------~~~~F~~c~~L~~i~l~~~~~~ 198 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDSMETL-------------HNGLFSGCGKLKSIKLPRNLKI 198 (394)
T ss_dssp TTTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTTCCEE-------------CTTTTTTCTTCCBCCCCTTCCE
T ss_pred eeecccccccccCcc---ccccchhhhcccCCCcEEecCCcccee-------------ccccccCCCCceEEEcCCCceE
Confidence 233443333222222 334444446778888888876533220 1133556666766665433111
Q ss_pred cCCCCCccCCCccEEEEEecCcccCCCCCCCccceeeEEeccCccccccchhhhcccceeEEEecCCCCccccccCCcCC
Q 047733 240 TLPRDLSFFKMLQRYSILIGDQWAWDSPSDDISGIFQLTVASGANICLNGGHIMQLKGIKELCLGGSLDMKSVLYGSHGE 319 (508)
Q Consensus 240 ~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 319 (508)
--...+..+..|+.+.+.... ...........+|+.+.+.. .++.+... ...
T Consensus 199 I~~~~F~~~~~L~~i~~~~~~-------------------------~~i~~~~~~~~~l~~i~ip~--~~~~i~~~-~f~ 250 (394)
T 4fs7_A 199 IRDYCFAECILLENMEFPNSL-------------------------YYLGDFALSKTGVKNIIIPD--SFTELGKS-VFY 250 (394)
T ss_dssp ECTTTTTTCTTCCBCCCCTTC-------------------------CEECTTTTTTCCCCEEEECT--TCCEECSS-TTT
T ss_pred eCchhhccccccceeecCCCc-------------------------eEeehhhcccCCCceEEECC--Cceecccc-ccc
Confidence 111122334444433221000 00000011234566665532 12222211 124
Q ss_pred CCCCCcEEEEecCCCceeeeecccCCCCCCCcCcCcceeeccCcccccccccCcccccccccCCeEEEcCCCCcceecch
Q 047733 320 GFPQLKHLEVVENSNLLCVVDTVDRATAPTTAFPVLESLFLRDLRNLEKICRGPLAAESFCQLRDMRVNGCDKLKNVFPL 399 (508)
Q Consensus 320 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 399 (508)
++..|+.+.+... +..+.. . .-..++.++........ +.. .....+.+|+.+.+.. .++.++..
T Consensus 251 ~~~~l~~~~~~~~--~~~i~~-~-----~F~~~~~l~~~~~~~~~----i~~--~~F~~~~~L~~i~l~~--~i~~I~~~ 314 (394)
T 4fs7_A 251 GCTDLESISIQNN--KLRIGG-S-----LFYNCSGLKKVIYGSVI----VPE--KTFYGCSSLTEVKLLD--SVKFIGEE 314 (394)
T ss_dssp TCSSCCEEEECCT--TCEECS-C-----TTTTCTTCCEEEECSSE----ECT--TTTTTCTTCCEEEECT--TCCEECTT
T ss_pred ccccceeEEcCCC--cceeec-c-----ccccccccceeccCcee----ecc--cccccccccccccccc--ccceechh
Confidence 5666676666542 222210 0 11223445444443211 111 1223456677777654 45666543
Q ss_pred hhhhccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccccccCCccEEEEe
Q 047733 400 VIGRGLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLHFEFPSLEKLRIL 476 (508)
Q Consensus 400 ~~~~~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~p~L~~L~i~ 476 (508)
. ...+.+|+.+++.. +++.+. ......+.+|+++.+.. +++.+...+.. .|++|+.+++.
T Consensus 315 a-F~~c~~L~~i~lp~--~v~~I~-----------~~aF~~c~~L~~i~lp~--~l~~I~~~aF~-~C~~L~~i~lp 374 (394)
T 4fs7_A 315 A-FESCTSLVSIDLPY--LVEEIG-----------KRSFRGCTSLSNINFPL--SLRKIGANAFQ-GCINLKKVELP 374 (394)
T ss_dssp T-TTTCTTCCEECCCT--TCCEEC-----------TTTTTTCTTCCEECCCT--TCCEECTTTBT-TCTTCCEEEEE
T ss_pred h-hcCCCCCCEEEeCC--cccEEh-----------HHhccCCCCCCEEEECc--cccEehHHHhh-CCCCCCEEEEC
Confidence 2 35567777777642 233332 23344566777777654 36666554433 56777777764
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.13 E-value=2.9e-06 Score=73.92 Aligned_cols=109 Identities=15% Similarity=0.095 Sum_probs=67.7
Q ss_pred hhCCCCccEEEecCC-cCCC-----CchhhccCccccEEeccCCCCCC--c----cccCCCCCCcEEEccCCCch-----
Q 047733 93 FTGMRELRVLDFARM-HLLP-----LPSSLRLFQNLQTLSLDYCELGD--I----AIVGDLKTLVILTLRGSDME----- 155 (508)
Q Consensus 93 ~~~l~~L~~L~l~~~-~~~~-----l~~~~~~l~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~i~----- 155 (508)
+...+.|+.|++++| .+.. +...+...++|++|++++|.+.+ . ..+...++|++|++++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 456777788888777 6652 34455566777777777777664 1 23444567777777777665
Q ss_pred hhHHHhccCCCCceEec--cCCCCCCccCh----hhhhcCCCCcEEEeecCCC
Q 047733 156 KLVEEIGQLTHLRLLDL--SNCFNLKVIPP----NVISSLSQLEELYIGESPI 202 (508)
Q Consensus 156 ~lp~~~~~l~~L~~L~l--~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~ 202 (508)
.+...+...++|++|++ ++|. ++.... ..+...++|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 34555666677777777 5555 433211 1244556777777776654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=1.6e-06 Score=83.93 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=30.8
Q ss_pred ccCCCcEEeeccccchhhhhccccCCcCCCCCCceeeccccCeeEcCCCccccccccCccc---cccCCccEEEEeeCC
Q 047733 404 GLQQLQFIEVTECQNLDVIFAAERGDESSNSNTQVIELTQLTILELCYLPQLTSFCTGDLH---FEFPSLEKLRILECP 479 (508)
Q Consensus 404 ~l~~L~~L~i~~c~~L~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~---~~~p~L~~L~i~~C~ 479 (508)
.+|+|++|++.+|..-......- .....+|+|++|+++.+ .+++.....+. ..+++|+.|+++.|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~l---------a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMF---------LESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHH---------HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHH---------HhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 45666666666655332221100 00123566666666553 45543211111 134666666666663
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.04 E-value=3.2e-06 Score=73.64 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=86.7
Q ss_pred CchhhccCccccEEeccCC-CCCC--c----cccCCCCCCcEEEccCCCch-----hhHHHhccCCCCceEeccCCCCCC
Q 047733 112 LPSSLRLFQNLQTLSLDYC-ELGD--I----AIVGDLKTLVILTLRGSDME-----KLVEEIGQLTHLRLLDLSNCFNLK 179 (508)
Q Consensus 112 l~~~~~~l~~L~~L~l~~~-~l~~--~----~~i~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~ 179 (508)
+...+...+.|++|++++| .+.+ . ..+...++|++|++++|.+. .+...+...++|++|++++|. ++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-IS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence 3455677889999999999 7875 1 45667889999999999876 455667778899999999987 55
Q ss_pred cc-----ChhhhhcCCCCcEEEe--ecCCCccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733 180 VI-----PPNVISSLSQLEELYI--GESPIMWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED 237 (508)
Q Consensus 180 ~~-----~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 237 (508)
+. ... +...++|++|++ .+|.+... +...+...+...+.|+.|++++|.
T Consensus 107 ~~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~--------g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 107 GSGILALVEA-LQSNTSLIELRIDNQSQPLGNN--------VEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHG-GGGCSSCCEEECCCCSSCCCHH--------HHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHH-HHhCCCceEEEecCCCCCCCHH--------HHHHHHHHHHhCCCcCEEeccCCC
Confidence 42 232 567788999999 77776522 122345566777889999998876
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=6.8e-06 Score=75.42 Aligned_cols=78 Identities=22% Similarity=0.251 Sum_probs=37.1
Q ss_pred cCccccEEeccCCCCCCc----cccCCCCCCcEEEccCCCchhhHHHhccCC--CCceEeccCCCCCCccC------hhh
Q 047733 118 LFQNLQTLSLDYCELGDI----AIVGDLKTLVILTLRGSDMEKLVEEIGQLT--HLRLLDLSNCFNLKVIP------PNV 185 (508)
Q Consensus 118 ~l~~L~~L~l~~~~l~~~----~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~--~L~~L~l~~~~~~~~~~------~~~ 185 (508)
++++|+.|++++|.++.+ ..+..+++|++|+|++|.+..+. .+..+. +|++|++.+|+....++ ..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 445555555555555441 22334555555555555555331 222222 55666665555222222 112
Q ss_pred hhcCCCCcEEE
Q 047733 186 ISSLSQLEELY 196 (508)
Q Consensus 186 l~~l~~L~~L~ 196 (508)
+..+|+|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45566666554
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.83 E-value=0.0011 Score=64.87 Aligned_cols=107 Identities=10% Similarity=0.152 Sum_probs=46.0
Q ss_pred CChhhhhCCC-CccEEEecCCcCCCCc-hhhccCccccEEeccCCC---CCC--ccccCCCCCCcEEEccCCCchhhH-H
Q 047733 88 IPDKFFTGMR-ELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCE---LGD--IAIVGDLKTLVILTLRGSDMEKLV-E 159 (508)
Q Consensus 88 ~~~~~~~~l~-~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~---l~~--~~~i~~l~~L~~L~l~~~~i~~lp-~ 159 (508)
+...+|.+++ .|+.+.+..+ ++.+. ..|.+|.+|+.+.+..+. ++. ...+..+.+|+.+.+..+ ++.++ .
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3344444443 3555555433 33222 345555555555554432 222 133444444544443332 22222 1
Q ss_pred HhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEee
Q 047733 160 EIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIG 198 (508)
Q Consensus 160 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 198 (508)
.+..+.+|+.+.+... ...+....+..+.+|+.+.+.
T Consensus 132 aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECC
T ss_pred hhhhhcccccccccce--eeeecccceeccccccccccc
Confidence 2345555555555431 334444334455555555544
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.81 E-value=0.003 Score=61.85 Aligned_cols=147 Identities=10% Similarity=0.126 Sum_probs=94.0
Q ss_pred CCC-CCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCc---CCCCc-hhhccCccccEEeccCCCCC
Q 047733 59 ECP-QLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMH---LLPLP-SSLRLFQNLQTLSLDYCELG 133 (508)
Q Consensus 59 ~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~l~-~~~~~l~~L~~L~l~~~~l~ 133 (508)
++. .|+++.+-. .+..+...+|.++.+|+.+.+..+. ++.+. ..|..+.+|+.+.+... ++
T Consensus 61 ~~~~~L~sI~iP~-------------svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~ 126 (394)
T 4gt6_A 61 NYKYVLTSVQIPD-------------TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT 126 (394)
T ss_dssp TCCSCCCEEEECT-------------TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS
T ss_pred CCCCcCEEEEECC-------------CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc
Confidence 453 578877744 3556777778999999999998763 44443 46778888888777553 34
Q ss_pred C--ccccCCCCCCcEEEccCCCchhhH-HHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecCCCccccccCc
Q 047733 134 D--IAIVGDLKTLVILTLRGSDMEKLV-EEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGESPIMWGKVGGV 210 (508)
Q Consensus 134 ~--~~~i~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 210 (508)
. ...+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..+....+ ...+|+.+.+...-...
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF-~~~~l~~i~ip~~~~~i------ 196 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAF-TGTALTQIHIPAKVTRI------ 196 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTT-TTCCCSEEEECTTCCEE------
T ss_pred eehhhhhhhhcccccccccce-eeeecccceecccccccccccce--eeEeccccc-cccceeEEEECCccccc------
Confidence 3 356778889999998654 33343 34567889999888653 556665433 34568888775432221
Q ss_pred CCCCcccchhhccCCCCccEEEEecc
Q 047733 211 DGEGRNASLDELNNLSKLTSLEILIE 236 (508)
Q Consensus 211 ~~~~~~~~~~~l~~l~~L~~L~l~~~ 236 (508)
....+..+.++........
T Consensus 197 -------~~~af~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 197 -------GTNAFSECFALSTITSDSE 215 (394)
T ss_dssp -------CTTTTTTCTTCCEEEECCS
T ss_pred -------ccchhhhccccceeccccc
Confidence 1133455666666655433
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.74 E-value=4.3e-05 Score=70.08 Aligned_cols=79 Identities=25% Similarity=0.241 Sum_probs=63.5
Q ss_pred hCCCCccEEEecCCcCCCC---chhhccCccccEEeccCCCCCCccccCCCC--CCcEEEccCCCchh-hH-------HH
Q 047733 94 TGMRELRVLDFARMHLLPL---PSSLRLFQNLQTLSLDYCELGDIAIVGDLK--TLVILTLRGSDMEK-LV-------EE 160 (508)
Q Consensus 94 ~~l~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~l~~~~~i~~l~--~L~~L~l~~~~i~~-lp-------~~ 160 (508)
.++++|+.|+|++|.++.+ +..+..+++|+.|+|++|.+++...+..+. +|++|++++|.+.. +| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5789999999999999764 466779999999999999998754444444 99999999997762 22 34
Q ss_pred hccCCCCceEec
Q 047733 161 IGQLTHLRLLDL 172 (508)
Q Consensus 161 ~~~l~~L~~L~l 172 (508)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 678999999973
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.47 E-value=0.0083 Score=58.23 Aligned_cols=122 Identities=9% Similarity=0.087 Sum_probs=62.1
Q ss_pred CCCCCcEEEcCCCCCCCCCcccCCCCCCCCChhhhhCCCCccEEEecCCcCCCCc-hhhccCccccEEeccCCCCCC-c-
Q 047733 59 ECPQLKYFHIANDPSRRIPVHIANDPSRRIPDKFFTGMRELRVLDFARMHLLPLP-SSLRLFQNLQTLSLDYCELGD-I- 135 (508)
Q Consensus 59 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~-~- 135 (508)
...+|+.+.+.. .+..++...|.++.+|+.+++..+ ++.+. ..|.++ .|+.+.+..+ ++. .
T Consensus 44 ~~~~i~~v~ip~-------------~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~ 107 (379)
T 4h09_A 44 DRDRISEVRVNS-------------GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGD 107 (379)
T ss_dssp GGGGCSEEEECT-------------TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECT
T ss_pred cccCCEEEEeCC-------------CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEecc
Confidence 445666666643 344566666777777887777644 44433 345555 4555555332 222 1
Q ss_pred cccCCCCCCcEEEccCCCchhhHHHhccCCCCceEeccCCCCCCccChhhhhcCCCCcEEEeecC
Q 047733 136 AIVGDLKTLVILTLRGSDMEKLVEEIGQLTHLRLLDLSNCFNLKVIPPNVISSLSQLEELYIGES 200 (508)
Q Consensus 136 ~~i~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 200 (508)
..+.. .+|+.+.+..+ +..+........+|+.+.+..+ +..+....+..+.+++...+...
T Consensus 108 ~aF~~-~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 108 YVFQG-TDLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp TTTTT-CCCSEEECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTT
T ss_pred ceecc-CCcccccCCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccccccc
Confidence 22322 36777777554 2223222222235555554431 34444433556666776665543
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.55 E-value=0.022 Score=49.23 Aligned_cols=106 Identities=13% Similarity=0.130 Sum_probs=63.6
Q ss_pred hCCCCccEEEecCC-cCCC-----CchhhccCccccEEeccCCCCCC--c----cccCCCCCCcEEEccCCCch-----h
Q 047733 94 TGMRELRVLDFARM-HLLP-----LPSSLRLFQNLQTLSLDYCELGD--I----AIVGDLKTLVILTLRGSDME-----K 156 (508)
Q Consensus 94 ~~l~~L~~L~l~~~-~~~~-----l~~~~~~l~~L~~L~l~~~~l~~--~----~~i~~l~~L~~L~l~~~~i~-----~ 156 (508)
.+-..|+.|+++++ .+.. +...+..-..|+.|+|++|.+.+ . ..+..-..|+.|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 45567888888775 6642 34455555678888888887765 1 23334567788888877665 4
Q ss_pred hHHHhccCCCCceEeccCCC--CCCc-----cChhhhhcCCCCcEEEeecC
Q 047733 157 LVEEIGQLTHLRLLDLSNCF--NLKV-----IPPNVISSLSQLEELYIGES 200 (508)
Q Consensus 157 lp~~~~~l~~L~~L~l~~~~--~~~~-----~~~~~l~~l~~L~~L~l~~~ 200 (508)
+.+.+..-+.|++|+++++. .++. +.. .+..-+.|++|+++.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCC
Confidence 44555555667788776542 1222 111 1344466777776544
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.01 E-value=0.019 Score=49.57 Aligned_cols=116 Identities=13% Similarity=0.153 Sum_probs=71.9
Q ss_pred hhccCccccEEeccCC-CCCC-----c-cccCCCCCCcEEEccCCCch-----hhHHHhccCCCCceEeccCCCCCCccC
Q 047733 115 SLRLFQNLQTLSLDYC-ELGD-----I-AIVGDLKTLVILTLRGSDME-----KLVEEIGQLTHLRLLDLSNCFNLKVIP 182 (508)
Q Consensus 115 ~~~~l~~L~~L~l~~~-~l~~-----~-~~i~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~ 182 (508)
.+.+-+.|+.|+++++ .+.+ . ..+..-..|+.|+|++|.+. .+.+.+..-+.|++|+|+.|. ++...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~G 114 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPEL 114 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHH
Confidence 3445567889999886 6764 1 45566778899999888776 455566677888889888877 44322
Q ss_pred h-h---hhhcCCCCcEEEeecCCC-ccccccCcCCCCcccchhhccCCCCccEEEEeccc
Q 047733 183 P-N---VISSLSQLEELYIGESPI-MWGKVGGVDGEGRNASLDELNNLSKLTSLEILIED 237 (508)
Q Consensus 183 ~-~---~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 237 (508)
. . .+..-..|++|+++++.. ... .....++...+..-+.|..|+++++.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig------~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLG------NQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCC------HHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcC------HHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 1 1 133445688888875432 100 01112344556666677777776554
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.95 E-value=0.053 Score=52.46 Aligned_cols=102 Identities=11% Similarity=0.181 Sum_probs=47.8
Q ss_pred hhCCCCccEEEecCCcCCCC-chhhccCccccEEeccCCCCCC--ccccCCCCCCcEEEccCCCchhhHH-HhccCCCCc
Q 047733 93 FTGMRELRVLDFARMHLLPL-PSSLRLFQNLQTLSLDYCELGD--IAIVGDLKTLVILTLRGSDMEKLVE-EIGQLTHLR 168 (508)
Q Consensus 93 ~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~l~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~ 168 (508)
|.....|+.+.+..+ +..+ ...+..+..|+.+.+..+ ++. ...+.++.+|+.+.+..+ ++.++. .+..|.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 344555555555433 1211 233445555555555433 222 233444555555555432 333332 244555666
Q ss_pred eEeccCCCCCCccChhhhhcCCCCcEEEee
Q 047733 169 LLDLSNCFNLKVIPPNVISSLSQLEELYIG 198 (508)
Q Consensus 169 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 198 (508)
.+.+..+. +..++...+..|.+|+.+.+.
T Consensus 290 ~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 290 KVVMDNSA-IETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp EEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred cccccccc-cceehhhhhcCCCCCCEEEcC
Confidence 66555433 444554445555666665554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.05 E-value=0.16 Score=40.58 Aligned_cols=31 Identities=19% Similarity=0.152 Sum_probs=12.5
Q ss_pred ccEEeccCCCCCC-c-cccCCCCCCcEEEccCC
Q 047733 122 LQTLSLDYCELGD-I-AIVGDLKTLVILTLRGS 152 (508)
Q Consensus 122 L~~L~l~~~~l~~-~-~~i~~l~~L~~L~l~~~ 152 (508)
|++|+|++|+|+. + ..+..+++|++|+|++|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3444444444333 1 23333444444444444
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.83 E-value=0.54 Score=37.44 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=19.7
Q ss_pred CccEEEecCCcCCCCch-hhccCccccEEeccCCC
Q 047733 98 ELRVLDFARMHLLPLPS-SLRLFQNLQTLSLDYCE 131 (508)
Q Consensus 98 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~ 131 (508)
+|++|+|++|.++.++. .|..+++|++|+|.+|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 45566666666665553 34555666666666654
No 165
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=39.97 E-value=7 Score=39.53 Aligned_cols=17 Identities=0% Similarity=0.106 Sum_probs=15.7
Q ss_pred CchhHHHHHHHHhcccc
Q 047733 1 MHDVVRDVAISIASRVQ 17 (508)
Q Consensus 1 mhdl~~d~~~~~~~~~~ 17 (508)
|||+|||+|+.++++++
T Consensus 456 mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 456 IDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp CCHHHHHHHHTTSCTHH
T ss_pred eChHHHHHHHHHHHHHH
Confidence 89999999999998776
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.90 E-value=36 Score=25.20 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=27.4
Q ss_pred CCCCCCChhhhhCCCCccEEEecCCcCCCC-chhhccCccccEEeccC
Q 047733 83 DPSRRIPDKFFTGMRELRVLDFARMHLLPL-PSSLRLFQNLQTLSLDY 129 (508)
Q Consensus 83 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~ 129 (508)
..+..+..+.|.++..|+.+.+..+ ++.+ ...|.+|.+|+.+.+..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3444555566677777777777665 2222 23466677777766654
Done!