BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047737
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 39 TNKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXX 98
++K LPP P LP++GNL Q+ + RS L ++YG + VY G+ P +
Sbjct: 6 SSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAI 65
Query: 99 XXXXKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQ 158
AFS R + IA ++ G + FA GE WR L + + + K +
Sbjct: 66 REALVDQAEAFSGRGK-IAVVDPIFQGYGVIFAN-GERWRALRRFSLATMRDFGMGKRSV 123
Query: 159 HIRV-EEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVE 209
R+ EE CL+ ++R+S G+ ++ + + ++++NI +FG++ +
Sbjct: 124 EERIQEEARCLVEELRKS-----KGALLDNTLLFHSITSNIICSIVFGKRFD 170
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 39 TNKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXX 98
++K LPP P LP++GNL Q+ + RS L ++YG + VY G+ P +
Sbjct: 6 SSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAI 65
Query: 99 XXXXKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQ 158
AFS R + IA ++ G + FA GE WR L + + + K +
Sbjct: 66 REALVDQAEAFSGRGK-IAVVDPIFQGYGVIFAN-GERWRALRRFSLATMRDFGMGKRSV 123
Query: 159 HIRV-EEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVE 209
R+ EE CL+ ++R+S G+ ++ + + ++++NI +FG++ +
Sbjct: 124 EERIQEEARCLVEELRKS-----KGALLDNTLLFHSITSNIICSIVFGKRFD 170
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 39 TNKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXX 98
++K LPP P LP++GNL Q+ + RS L ++YG + VY G+ P +
Sbjct: 6 SSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAI 65
Query: 99 XXXXKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQ 158
AFS R + IA ++ G + FA GE WR L + + + K +
Sbjct: 66 REALVDQAEAFSGRGK-IAVVDPIFQGYGVIFAN-GERWRALRRFSLATMRDFGMGKRSV 123
Query: 159 HIRV-EEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVE 209
R+ EE CL+ ++R+S G+ ++ + + ++++NI +FG++ +
Sbjct: 124 EERIQEEARCLVEELRKS-----KGALLDNTLLFHSITSNIICSIVFGKRFD 170
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 39 TNKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXX 98
++K LPP P LP++GNL Q+ + RS L ++YG + VY G+ P +
Sbjct: 6 SSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAI 65
Query: 99 XXXXKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQ 158
AFS R + IA ++ G + FA GE WR L + + + K +
Sbjct: 66 REALVDQAEAFSGRGK-IAVVDPIFQGYGVIFAN-GERWRALRRFSLATMRDFGMGKRSV 123
Query: 159 HIRV-EEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVE 209
R+ EE CL+ ++R+S G+ ++ + + ++++NI +FG++ +
Sbjct: 124 EERIQEEARCLVEELRKS-----KGALLDNTLLFHSITSNIICSIVFGKRFD 170
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 39 TNKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXX 98
++K LPP P LP++GNL Q+ + RS L ++YG + VY G+ P +
Sbjct: 6 SSKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAI 65
Query: 99 XXXXKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQ 158
AFS R + IA ++ G + FA GE WR L + + + K +
Sbjct: 66 REALVDQAEAFSGRGK-IAVVDPIFQGYGVIFAN-GERWRALRRFSLATMRDFGMGKRSV 123
Query: 159 HIRV-EEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVE 209
R+ EE CL+ ++R+S G+ ++ + + ++++NI +FG++ +
Sbjct: 124 EERIQEEARCLVEELRKS-----KGALLDNTLLFHSITSNIICSIVFGKRFD 170
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 8/177 (4%)
Query: 39 TNKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXX 98
++K LPP P LP IGN Q+ + SL +S+RYGP+ ++ G +
Sbjct: 6 SSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 99 XXXXKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQ 158
FS R AT ++ G + F+ GE +QL + + L K
Sbjct: 66 REALVDQAEEFSGRGEQ-ATFDWVFKGYGVVFSN-GERAKQLRRFSIATLRDFGVGKRGI 123
Query: 159 HIRV-EEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVEDLEEE 214
R+ EE LI+ +R G GG+ I+ + + +N+ + +FG + + ++E
Sbjct: 124 EERIQEEAGFLIDALR-----GTGGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKE 175
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 7/140 (5%)
Query: 39 TNKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXX 98
++K LPP P LPIIGN+ QI +S S YGP+ VYFG +P +
Sbjct: 6 SSKGKLPPGPTPLPIIGNMLQIDVKDICKSFTNFSKVYGPVFTVYFGMNPIVVFHGYEAV 65
Query: 99 XXXXKTHDIAFSNRPRS-IATKILLYDGKDLG-FAEYGEYWRQLWKICVLELLSNKRVKS 156
+ FS R S I+ +I K LG + G+ W+++ + + L + K
Sbjct: 66 KEALIDNGEEFSGRGNSPISQRIT----KGLGIISSNGKRWKEIRRFSLTTLRNFGMGKR 121
Query: 157 AQHIRV-EEVSCLINKIRRS 175
+ RV EE CL+ ++R++
Sbjct: 122 SIEDRVQEEAHCLVEELRKT 141
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 8/177 (4%)
Query: 39 TNKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXX 98
++K LPP P LP IGN Q+ + SL +S+RYGP+ ++ G +
Sbjct: 6 SSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 99 XXXXKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQ 158
FS R AT ++ G + F+ GE +QL + + L K
Sbjct: 66 REALVDQAEEFSGRGEQ-ATFDWVFKGYGVVFSN-GERAKQLRRFSIATLRDFGVGKRGI 123
Query: 159 HIRV-EEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVEDLEEE 214
R+ EE LI+ +R G GG+ I+ + + +N+ + +FG + + ++E
Sbjct: 124 EERIQEEAGFLIDALR-----GTGGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKE 175
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 8/177 (4%)
Query: 39 TNKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXX 98
++K LPP P LP IGN Q+ + SL +S+RYGP+ ++ G +
Sbjct: 6 SSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 99 XXXXKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQ 158
FS R AT ++ G + F+ GE +QL + + L K
Sbjct: 66 REALVDQAEEFSGRGEQ-ATFDWVFKGYGVVFSN-GERAKQLRRFSIATLRDFGVGKRGI 123
Query: 159 HIRV-EEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVEDLEEE 214
R+ EE LI+ +R G GG+ I+ + + +N+ + +FG + + ++E
Sbjct: 124 EERIQEEAGFLIDALR-----GTGGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKE 175
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 8/177 (4%)
Query: 39 TNKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXX 98
++K LPP P LP IGN Q+ + SL +S+RYGP+ ++ G +
Sbjct: 6 SSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 99 XXXXKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQ 158
FS R AT ++ G + F+ GE +QL + + L K
Sbjct: 66 REALVDQAEEFSGRGEQ-ATFDWVFKGYGVVFSN-GERAKQLRRFSIATLRDFGVGKRGI 123
Query: 159 HIRV-EEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVEDLEEE 214
R+ EE LI+ +R G GG+ I+ + + +N+ + +FG + + ++E
Sbjct: 124 EERIQEEAGFLIDALR-----GTGGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKE 175
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 8/177 (4%)
Query: 39 TNKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXX 98
++K LPP P LP IGN Q+ + SL +S+RYGP+ ++ G +
Sbjct: 6 SSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 99 XXXXKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQ 158
FS R AT ++ G + F+ GE +QL + + L K
Sbjct: 66 REALVDQAEEFSGRGEQ-ATFDWVFKGYGVVFSN-GERAKQLRRFSIATLRDFGVGKRGI 123
Query: 159 HIRV-EEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVEDLEEE 214
R+ EE LI+ +R G GG+ I+ + + +N+ + +FG + + ++E
Sbjct: 124 EERIQEEAGFLIDALR-----GTGGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKE 175
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 39 TNKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXX 98
++K LPP P PIIGN+ QI +SL S+ YGP+ VY G P++
Sbjct: 6 SSKGKLPPGPTPFPIIGNILQIDAKDISKSLTKFSECYGPVFTVYLGMKPTVVLHGYEAV 65
Query: 99 XXXXKTHDIAFSNRPRSIATKILLYDGKDLGFA-EYGEYWRQLWKICVLELLSNKRVKSA 157
F+ R + IL K LG A + W+++ + ++ L + K +
Sbjct: 66 KEALVDLGEEFAGRG---SVPILEKVSKGLGIAFSNAKTWKEMRRFSLMTLRNFGMGKRS 122
Query: 158 QHIRV-EEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVEDLEEE 214
R+ EE CL+ ++R++ S + + ++ N+ IF + + +EE
Sbjct: 123 IEDRIQEEARCLVEELRKT-----NASPCDPTFILGCAPCNVICSVIFHNRFDYKDEE 175
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 8/177 (4%)
Query: 39 TNKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXX 98
++K LPP P LP IGN Q+ + SL +S+RYGP+ ++ G +
Sbjct: 6 SSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAV 65
Query: 99 XXXXKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQ 158
FS R AT L+ G + F+ GE +QL + + L K
Sbjct: 66 KEALVDQAEEFSGRGEQ-ATFDWLFKGYGVAFSN-GERAKQLRRFSIATLRGFGVGKRGI 123
Query: 159 HIRV-EEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVEDLEEE 214
R+ EE LI+ +R G G+ I+ + + +N+ + +FG + + ++E
Sbjct: 124 EERIQEEAGFLIDALR-----GTHGANIDPTFFLSRTVSNVISSIVFGDRFDYEDKE 175
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 88/222 (39%), Gaps = 17/222 (7%)
Query: 39 TNKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXX 98
T+ PP P P+IGN + Q H S L+ RYG + + G+ P +
Sbjct: 5 TSSKGKPPGPFAWPLIGNAAAVGQ-AAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAI 63
Query: 99 XXXXKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLWKIC--VLELLSNKRVKS 156
AF++RP S A+ ++ G+ + F Y E+W+ + ++ ++ +S
Sbjct: 64 HQALVQQGSAFADRP-SFASFRVVSGGRSMAFGHYSEHWKVQRRAAHSMMRNFFTRQPRS 122
Query: 157 AQHIR---VEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVEDLEE 213
Q + + E L+ + R +G L+ ++AV+N ++ C R D
Sbjct: 123 RQVLEGHVLSEARELVALLVRGSADGAFLDPRPLT--VVAVANVMSAVCFGCRYSHD--- 177
Query: 214 ENGSGESKFGELTKKNMILLARTCVGDLYPSLKWIDFLTGSI 255
+ +F EL N G L + W+ + +
Sbjct: 178 -----DPEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPV 214
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Query: 44 LPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXXXXXXK 103
LPP P LP+IGN+ QI +SL LS YGP+ +YFG P +
Sbjct: 12 LPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALI 71
Query: 104 THDIAFSNRPRSIATKILLYDGKDLGFA---EYGEYWRQLWKICVLELLSNKRVKSAQHI 160
FS R L + + GF G+ W+++ + ++ L + K +
Sbjct: 72 DLGEEFSGR-----GIFPLAERANRGFGIVFSNGKKWKEIRRFSLMTLRNFGMGKRSIED 126
Query: 161 RV-EEVSCLINKIRRS 175
RV EE CL+ ++R++
Sbjct: 127 RVQEEARCLVEELRKT 142
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 45 PPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXXXXXXKT 104
PP P LP+IGN+ QI +SL LS YGP+ +YFG P +
Sbjct: 11 PPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALID 70
Query: 105 HDIAFSNRPRSIATKILLYDGKDLGFA---EYGEYWRQLWKICVLELLSNKRVKSAQHIR 161
FS R L + + GF G+ W+++ + ++ L + K + R
Sbjct: 71 LGEEFSGR-----GIFPLAERANRGFGIVFSNGKKWKEIRRFSLMTLRNFGMGKRSIEDR 125
Query: 162 V-EEVSCLINKIRRS 175
V EE CL+ ++R++
Sbjct: 126 VQEEARCLVEELRKT 140
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 86/183 (46%), Gaps = 16/183 (8%)
Query: 42 LNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXXXXX 101
L PP P P++G++ + +N PH +L +S RYG ++ + G++P L
Sbjct: 15 LKSPPEPWGWPLLGHVLTLGKN-PHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQA 73
Query: 102 XKTHDIAFSNRPRSIATKILLYDGKDLGFA-EYGEYW---RQLWK--ICVLELLSNKRVK 155
F RP + T L+ DG+ L F+ + G W R+L + + + S+
Sbjct: 74 LVRQGDDFKGRP-DLYTSTLITDGQSLTFSTDSGPVWAARRRLAQNALNTFSIASDPASS 132
Query: 156 SA----QHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVEDL 211
S+ +H+ +E LI++++ + G ++++++V+N I C FG+ +
Sbjct: 133 SSCYLEEHVS-KEAKALISRLQE--LMAGPGHFDPYNQVVVSVANVIGAMC-FGQHFPES 188
Query: 212 EEE 214
+E
Sbjct: 189 SDE 191
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 9/136 (6%)
Query: 44 LPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXXXXXXK 103
LPP P LP+IGN+ QI +SL LS YGP+ +YFG +
Sbjct: 12 LPPGPTPLPVIGNILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLHGYEVVKEALI 71
Query: 104 THDIAFSNRPRSIATKILLYDGKDLGFA---EYGEYWRQLWKICVLELLSNKRVKSAQHI 160
FS R L + + GF G+ W+++ + ++ L + K +
Sbjct: 72 DLGEEFSGR-----GHFPLAERANRGFGIVFSNGKRWKEIRRFSLMTLRNFGMGKRSIED 126
Query: 161 RV-EEVSCLINKIRRS 175
RV EE CL+ ++R++
Sbjct: 127 RVQEEARCLVEELRKT 142
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 14/179 (7%)
Query: 39 TNKLNLPPSPPRLPIIGNLHQI-VQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXX 97
++K LPP P LPIIGNL Q+ ++N+P +S L+ R+GP+ +Y G+ +
Sbjct: 6 SSKGKLPPGPFPLPIIGNLFQLELKNIP-KSFTRLAQRFGPVFTLYVGSQRMVVMHGYKA 64
Query: 98 XXXXXKTHDIAFSNRPRSIATKILLYDGKDLGFA-EYGEYWRQLWKICVLELLSNKRVKS 156
+ FS R A + +D G G W+ + + + L + K
Sbjct: 65 VKEALLDYKDEFSGRGDLPA----FHAHRDRGIIFNNGPTWKDIRRFSLTTLRNYGMGKQ 120
Query: 157 AQHIRVE-EVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVEDLEEE 214
R++ E L+ +R++ G + + +I N+ +F RK D +E
Sbjct: 121 GNESRIQREAHFLLEALRKT-----QGQPFDPTFLIGCAPCNVIADILF-RKHFDYNDE 173
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 15/206 (7%)
Query: 45 PPSPPRLPIIGNLHQIVQNVP-HRSLKALSDRYGPIILVYFGNSPSLXXXXXXXXXXXXK 103
P S LP++G+L + ++ H + L +YGPI V G ++
Sbjct: 10 PKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLI 69
Query: 104 THDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLWKICVLEL-LSNKRVKSAQHIRV 162
FS RP+ I + K + FA+ G +W+ ++ + L + + I
Sbjct: 70 KKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIIC 129
Query: 163 EEVSCLINKIRRSCINGHGGSTINLS-EMILAVSNNIATRCIFGRKVEDLEEENGSGESK 221
+E+S L + + H G +I++S + +AV+N I+ C + +NG E
Sbjct: 130 QEISTLCD-----MLATHNGQSIDISFPVFVAVTNVISLICF------NTSYKNGDPELN 178
Query: 222 FGELTKKNMIL-LARTCVGDLYPSLK 246
+ + +I L++ + DL P LK
Sbjct: 179 VIQNYNEGIIDNLSKDSLVDLVPWLK 204
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 8/160 (5%)
Query: 56 NLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXXXXXXKTHDIAFSNRPRS 115
NL Q+ + +S ++YG + V+ G P + AFS R +
Sbjct: 23 NLLQMDRRGLLKSFLRFREKYGDVFTVHLGPRPVVMLCGVEAIREALVDKAEAFSGRGK- 81
Query: 116 IATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRV-EEVSCLINKIRR 174
IA + G + FA G W+ L + V + K + R+ EE CLI ++R+
Sbjct: 82 IAMVDPFFRGYGVIFAN-GNRWKVLRRFSVTTMRDFGMGKRSVEERIQEEAQCLIEELRK 140
Query: 175 SCINGHGGSTINLSEMILAVSNNIATRCIFGRKVEDLEEE 214
S G+ ++ + + +++ NI +FG++ ++E
Sbjct: 141 S-----KGALMDPTFLFQSITANIICSIVFGKRFHYQDQE 175
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 19/178 (10%)
Query: 58 HQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXXXXXXKTHDIAFSNRPRSIA 117
H QN P+ L R+G + + +P + TH ++RP
Sbjct: 26 HVDFQNTPY-CFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPI 84
Query: 118 TKILLYDGKDLG--FAEYGEYWRQLWKICVLELLS-NKRVKSAQHIRVEEVSCLINKIRR 174
T+IL + + G A YG WR+ + V L + KS + EE +CL
Sbjct: 85 TQILGFGPRSQGVFLARYGPAWREQRRFSVSTLRNLGLGKKSLEQWVTEEAACLC----- 139
Query: 175 SCINGHGGSTINLSEMILAVSNNIATRCIFGRKVE----------DLEEENGSGESKF 222
+ H G + ++ +N+ GR+ E DL +E ES F
Sbjct: 140 AAFANHSGRPFRPNGLLDKAVSNVIASLTCGRRFEYDDPRFLRLLDLAQEGLKEESGF 197
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 19/178 (10%)
Query: 58 HQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXXXXXXKTHDIAFSNRPRSIA 117
H QN P+ L R+G + + +P + TH ++RP
Sbjct: 26 HVDFQNTPY-CFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPI 84
Query: 118 TKILLYDGKDLG--FAEYGEYWRQLWKICVLELLS-NKRVKSAQHIRVEEVSCLINKIRR 174
T+IL + + G A YG WR+ + V L + KS + EE +CL
Sbjct: 85 TQILGFGPRSQGVFLARYGPAWREQRRFSVSTLRNLGLGKKSLEQWVTEEAACLC----- 139
Query: 175 SCINGHGGSTINLSEMILAVSNNIATRCIFGRKVE----------DLEEENGSGESKF 222
+ H G + ++ +N+ GR+ E DL +E ES F
Sbjct: 140 AAFANHSGRPFRPNGLLDKAVSNVIASLTCGRRFEYDDPRFLRLLDLAQEGLKEESGF 197
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 42 LNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXXXXX 101
L PP P P+IG++ + +N PH +L +S +YG ++ + G++P +
Sbjct: 10 LKNPPGPWGWPLIGHMLTLGKN-PHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQA 68
Query: 102 XKTHDIAFSNRPRSIATKILLYDGKDLGFA-EYGEYW 137
F RP + T L+ +G+ + F+ + G W
Sbjct: 69 LVRQGDDFKGRP-DLYTFTLISNGQSMSFSPDSGPVW 104
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 12/170 (7%)
Query: 42 LNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLXXXXXXXXXXX 101
L+LPP P G LH + N+P L +L+ + GP+ + G +
Sbjct: 28 LHLPPLVP-----GFLHLLQPNLPIH-LLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEA 81
Query: 102 XKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIR 161
+ F+ RP+ + K++ +D+ +Y W+ K+ LL R S+
Sbjct: 82 MIRKWVDFAGRPQIPSYKLVSQRCQDISLGDYSLLWKAHKKLTRSALLLGTR--SSMEPW 139
Query: 162 VEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVEDL 211
V++++ + R G+ + + + ++ +I FG K + L
Sbjct: 140 VDQLTQEFCERMRV----QAGAPVTIQKEFSLLTCSIICYLTFGNKEDTL 185
>pdb|1OWX|A Chain A, Solution Structure Of The C-Terminal Rrm Of Human La
(La225- 334)
Length = 121
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 216 GSGESKFGELTKKNMILLARTCVGDLY------PSLKWIDFLTGS 254
GS E K G L K + L +TC DL+ +KWIDF+ G+
Sbjct: 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,038,777
Number of Sequences: 62578
Number of extensions: 245991
Number of successful extensions: 489
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 28
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)