Query 047737
Match_columns 265
No_of_seqs 175 out of 1772
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 03:56:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 100.0 1.1E-28 3.6E-33 211.1 17.4 200 40-249 5-207 (494)
2 3pm0_A Cypib1, cytochrome P450 100.0 5.7E-29 2E-33 213.3 13.8 200 40-249 6-211 (507)
3 3s79_A Cytochrome P450 19A1; o 100.0 5.9E-28 2E-32 206.8 13.7 163 41-209 43-209 (503)
4 2hi4_A Cytochrome P450 1A2; CY 99.9 2E-27 6.8E-32 203.2 14.9 200 40-249 13-222 (495)
5 3qz1_A Steroid 21-hydroxylase; 99.9 6.4E-28 2.2E-32 206.3 9.9 194 37-249 23-218 (496)
6 3nxu_A Cytochrome P450 3A4; al 99.9 2E-27 6.9E-32 202.7 12.1 158 43-209 14-172 (485)
7 3k9v_A 1,25-dihydroxyvitamin D 99.9 1.7E-26 5.9E-31 196.7 16.2 191 38-234 19-218 (482)
8 3czh_A Cytochrome P450 2R1; vi 99.9 2E-26 7E-31 196.3 13.9 199 40-249 9-213 (481)
9 3tbg_A Cytochrome P450 2D6; mo 99.9 7.7E-26 2.6E-30 192.5 17.0 164 40-209 7-174 (479)
10 3e6i_A CYPIIE1, P450-J, cytoch 99.9 4.9E-26 1.7E-30 193.6 15.5 179 40-231 7-187 (476)
11 2fdv_A Cytochrome P450 2A6; CY 99.9 5E-26 1.7E-30 193.6 14.5 180 40-231 7-188 (476)
12 1po5_A Cytochrome P450 2B4; ox 99.9 6.8E-25 2.3E-29 186.7 18.8 162 40-209 7-170 (476)
13 3gw9_A Sterol 14alpha-demethyl 99.9 4.1E-26 1.4E-30 192.7 10.8 191 42-249 2-195 (450)
14 1r9o_A Cytochrome P450 2C9; mo 99.9 2E-25 7E-30 189.9 14.6 162 40-209 8-171 (477)
15 3ld6_A Lanosterol 14-alpha dem 99.9 1.4E-25 4.7E-30 190.2 8.9 158 41-209 9-168 (461)
16 2ij2_A Cytochrome P450 BM3; mo 99.9 7.1E-24 2.4E-28 180.1 17.3 178 43-231 3-182 (470)
17 3n9y_A Cholesterol SIDE-chain 99.9 6.7E-24 2.3E-28 181.0 14.6 192 38-233 4-204 (487)
18 2ve3_A Putative cytochrome P45 99.9 1.5E-23 5.3E-28 176.8 12.2 156 39-209 8-164 (444)
19 3i3k_A Lanosterol 14-alpha dem 99.9 5.8E-24 2E-28 180.2 9.0 160 39-209 7-168 (461)
20 2cib_A Cytochrome P450 51; hem 99.9 5.2E-23 1.8E-27 174.1 11.5 168 43-229 4-172 (455)
21 3dbg_A Putative cytochrome P45 99.9 1.9E-23 6.5E-28 177.3 6.5 169 42-231 22-192 (467)
22 3v8d_A Cholesterol 7-alpha-mon 99.9 3.6E-23 1.2E-27 176.7 7.1 167 38-209 8-176 (491)
23 3mdm_A Cholesterol 24-hydroxyl 99.9 6.5E-21 2.2E-25 161.2 15.7 161 62-232 9-173 (456)
24 2cd8_A Cytochrome P450 monooxy 99.9 2.4E-21 8.3E-26 162.9 12.9 157 41-209 24-186 (436)
25 1n97_A CYP175A1; electron tran 99.8 1.5E-21 5E-26 162.0 7.5 147 47-209 3-150 (389)
26 3dax_A Cytochrome P450 7A1; ch 99.8 1.6E-20 5.5E-25 160.2 7.7 166 39-209 9-176 (491)
27 1izo_A P450bsbeta, cytochrome 99.8 1.6E-19 5.4E-24 151.1 13.6 145 51-209 8-155 (417)
28 3awm_A Fatty acid alpha-hydrox 99.8 3.4E-19 1.2E-23 149.0 14.3 148 45-209 4-154 (415)
29 3dsk_A Cytochrome P450 74A, ch 99.8 6.7E-20 2.3E-24 156.6 9.6 165 39-209 24-204 (495)
30 1jfb_A Nitric-oxide reductase 99.8 2.5E-19 8.5E-24 149.3 12.7 157 44-209 2-163 (404)
31 1ued_A P450 OXYC, P450 monooxy 99.8 9.7E-19 3.3E-23 145.8 13.8 151 41-209 8-170 (406)
32 3b6h_A Prostacyclin synthase; 99.8 3.7E-19 1.3E-23 152.1 9.8 161 39-209 14-176 (498)
33 2zbx_A Cytochrome P450-SU1; be 99.8 7.4E-18 2.5E-22 140.7 15.0 154 43-209 5-168 (412)
34 1s1f_A Putative cytochrome P45 99.8 2.6E-17 9E-22 137.1 16.6 151 43-209 8-166 (406)
35 1cpt_A Cytochrome P450-TERP; o 99.8 4E-18 1.4E-22 143.0 11.0 154 40-209 3-175 (428)
36 3dan_A Cytochrome P450 74A2; A 99.7 4.1E-18 1.4E-22 144.7 10.6 164 40-209 6-186 (473)
37 3b98_A Prostaglandin I2 syntha 99.7 1.7E-18 5.7E-23 147.2 7.8 156 40-207 15-174 (475)
38 2zwu_A Camphor 5-monooxygenase 99.7 4.5E-17 1.5E-21 136.0 13.6 155 39-209 7-173 (415)
39 3abb_A CYP105D6, cytochrome P4 99.7 7.3E-17 2.5E-21 134.5 14.7 136 62-209 23-167 (408)
40 3oo3_A OXY protein; cytochrome 99.7 9.6E-17 3.3E-21 132.8 13.8 138 62-209 11-152 (384)
41 3aba_A Cytochrome P450; oxidor 99.7 4E-16 1.4E-20 129.9 15.9 136 62-209 18-160 (403)
42 3ivy_A Cytochrome P450 CYP125; 99.7 1E-16 3.5E-21 134.6 12.3 154 42-208 17-187 (433)
43 3tyw_A Putative cytochrome P45 99.7 5.8E-16 2E-20 129.4 16.2 136 62-209 28-172 (417)
44 1odo_A Putative cytochrome P45 99.7 1.3E-16 4.6E-21 132.9 10.0 138 62-209 14-162 (408)
45 2xbk_A PIMD protein; epoxidati 99.7 1.1E-15 3.8E-20 127.1 15.3 136 62-209 25-170 (404)
46 2wm5_A CYP124, putative cytoch 99.7 3.6E-16 1.2E-20 131.4 12.1 152 63-231 44-206 (435)
47 2jjn_A Cytochrome P450 113A1; 99.7 2.1E-16 7.2E-21 131.9 10.2 144 37-209 13-157 (411)
48 3a4g_A Vitamin D hydroxylase; 99.7 8.6E-16 2.9E-20 128.1 12.9 135 62-209 19-159 (411)
49 2y5n_A MYCG, P-450-like protei 99.7 1E-15 3.5E-20 127.9 13.0 136 62-209 36-176 (417)
50 3tkt_A Cytochrome P450; aromat 99.7 1.2E-15 4.2E-20 128.7 13.2 134 65-209 47-197 (450)
51 2z36_A MOXA, cytochrome P450 t 99.7 2.3E-15 8E-20 125.6 14.7 138 62-209 21-169 (413)
52 4fb2_A P450CIN; heme, monooxyg 99.6 3.7E-16 1.3E-20 129.8 9.2 136 62-209 18-156 (398)
53 1z8o_A 6-deoxyerythronolide B 99.6 1E-15 3.6E-20 127.4 11.8 135 62-209 13-162 (404)
54 2dkk_A Cytochrome P450; CYP158 99.6 1.8E-15 6.1E-20 126.2 12.4 136 62-209 26-169 (411)
55 3ejb_B Biotin biosynthesis cyt 99.6 1.1E-15 3.6E-20 127.3 10.8 136 62-209 12-152 (404)
56 2uuq_A CYP130, cytochrome P450 99.6 5E-15 1.7E-19 123.6 13.3 134 62-209 24-168 (414)
57 2z3t_A Cytochrome P450; monoxy 99.6 4.9E-15 1.7E-19 124.1 13.3 135 62-209 19-170 (425)
58 1gwi_A CYP154C1, cytochrome P4 99.6 3.9E-15 1.3E-19 124.2 11.9 136 62-209 16-165 (411)
59 2xkr_A CYP142, putative cytoch 99.6 3.2E-15 1.1E-19 124.2 10.9 144 62-231 17-161 (398)
60 3mgx_A Putative P450 monooxyge 99.6 3.7E-15 1.3E-19 124.4 8.9 137 62-209 36-178 (415)
61 3nc3_A Cytochrome P450 CYPX; c 99.6 2.6E-15 8.9E-20 126.3 7.9 149 62-233 52-201 (441)
62 1q5d_A P450 epoxidase; cytochr 99.6 2.9E-15 9.8E-20 125.3 7.9 148 62-232 25-182 (419)
63 1lfk_A OXYB, P450 monooxygenas 99.6 1.2E-14 4.1E-19 120.8 11.4 133 66-209 16-161 (398)
64 3oft_A Cytochrome P450, CYP101 99.6 2.7E-14 9.1E-19 118.6 11.7 135 62-209 23-158 (396)
65 3lxh_A Cytochrome P450; heme, 99.6 3E-14 1E-18 119.2 12.1 136 62-209 37-174 (421)
66 1n40_A P450 MT2, cytochrome P4 99.5 8.8E-15 3E-19 121.5 7.5 132 62-209 15-155 (396)
67 3r9b_A Cytochrome P450 164A2; 99.5 5.2E-14 1.8E-18 117.6 10.9 132 62-209 28-168 (418)
68 3buj_A CALO2; heme, iron, meta 99.5 2.2E-14 7.5E-19 119.1 7.9 132 62-209 12-151 (397)
69 1io7_A Cytochrome P450 CYP119; 99.5 4.4E-14 1.5E-18 116.1 7.9 128 65-209 1-139 (368)
70 3rwl_A Cytochrome P450 alkane 99.5 3.3E-13 1.1E-17 113.0 12.9 137 62-209 37-183 (426)
71 2rfb_A Cytochrome P450; heme, 99.5 2.5E-13 8.5E-18 110.6 9.9 114 74-209 2-116 (343)
72 3b4x_A 367AA long hypothetical 99.4 5.2E-13 1.8E-17 109.7 8.7 124 65-209 1-135 (367)
73 2wiy_A XPLA-heme, cytochrome P 99.4 9.4E-13 3.2E-17 109.2 8.1 133 62-209 19-151 (394)
74 4dnj_A Putative cytochrome P45 99.3 1.1E-11 3.7E-16 103.4 13.1 145 49-205 18-169 (412)
75 3p3o_A Cytochrome P450; monoox 99.3 7.5E-13 2.6E-17 110.5 3.1 135 62-209 32-171 (416)
76 4dxy_A Cytochrome P450, CYP101 99.1 2.6E-09 8.8E-14 89.0 14.5 136 62-209 36-173 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 98.1 4.9E-09 1.7E-13 86.0 -12.0 134 44-209 35-180 (381)
78 1s79_A Lupus LA protein; RRM, 72.0 15 0.00051 23.3 6.2 51 51-104 13-71 (103)
79 3lqv_A PRE-mRNA branch site pr 67.0 22 0.00075 22.7 7.6 58 44-104 3-66 (115)
80 3d2w_A TAR DNA-binding protein 64.5 19 0.00066 21.9 5.4 51 48-101 10-64 (89)
81 1iqt_A AUF1, heterogeneous nuc 59.9 17 0.00057 21.0 4.4 42 64-105 11-61 (75)
82 2krb_A Eukaryotic translation 59.4 25 0.00084 20.7 5.7 40 65-104 20-66 (81)
83 2mss_A Protein (musashi1); RNA 54.8 28 0.00095 20.0 4.8 41 64-104 11-60 (75)
84 2p22_C Protein SRN2; endosome, 51.3 66 0.0023 23.2 7.5 57 135-195 111-168 (192)
85 1whv_A Poly(A)-specific ribonu 50.0 22 0.00076 22.5 3.7 42 63-104 26-68 (100)
86 3beg_B Splicing factor, argini 48.8 50 0.0017 21.1 6.4 57 52-111 19-78 (115)
87 2diu_A KIAA0430 protein; struc 47.9 44 0.0015 21.0 4.9 61 52-113 12-75 (96)
88 1x4e_A RNA binding motif, sing 46.1 44 0.0015 19.7 5.3 50 51-103 7-65 (85)
89 4f25_A Polyadenylate-binding p 45.9 56 0.0019 20.8 5.6 50 52-104 8-64 (115)
90 3s7r_A Heterogeneous nuclear r 42.1 41 0.0014 19.9 4.2 51 51-104 13-72 (87)
91 2dgu_A Heterogeneous nuclear r 41.9 60 0.002 20.0 6.3 51 51-104 13-64 (103)
92 1sjr_A Polypyrimidine tract-bi 41.4 88 0.003 21.8 6.2 49 53-104 50-103 (164)
93 4fxv_A ELAV-like protein 1; RN 41.1 62 0.0021 20.0 5.6 49 53-104 23-80 (99)
94 1whx_A Hypothetical protein ri 40.9 67 0.0023 20.3 6.2 57 53-112 14-74 (111)
95 3s6e_A RNA-binding protein 39; 40.3 52 0.0018 21.2 4.6 66 45-110 3-81 (114)
96 2cqc_A Arginine/serine-rich sp 40.2 59 0.002 19.5 6.4 52 50-104 16-76 (95)
97 2nlw_A Eukaryotic translation 39.9 67 0.0023 20.0 6.5 53 51-104 17-80 (105)
98 3s8s_A Histone-lysine N-methyl 39.6 71 0.0024 20.2 5.6 51 51-104 8-67 (110)
99 1sjq_A Polypyrimidine tract-bi 39.1 73 0.0025 20.2 6.1 51 50-103 17-70 (105)
100 3ex7_B RNA-binding protein 8A; 38.6 77 0.0026 20.4 6.2 58 52-112 25-92 (126)
101 2kvi_A Nuclear polyadenylated 38.4 66 0.0023 19.5 6.6 57 52-110 13-71 (96)
102 3ctr_A Poly(A)-specific ribonu 37.4 34 0.0012 21.7 3.2 40 65-104 18-58 (101)
103 1x4c_A Splicing factor, argini 37.2 75 0.0026 19.8 7.4 50 52-104 18-69 (108)
104 2ad9_A Polypyrimidine tract-bi 35.6 91 0.0031 20.3 6.0 51 50-103 32-85 (119)
105 2hvz_A Splicing factor, argini 35.1 77 0.0027 19.3 5.3 41 64-104 12-56 (101)
106 1p27_B RNA-binding protein 8A; 35.0 80 0.0027 19.5 5.6 49 53-104 27-84 (106)
107 2kxn_B Transformer-2 protein h 35.0 95 0.0032 20.3 8.2 52 50-104 47-107 (129)
108 2jwn_A Embryonic polyadenylate 34.8 71 0.0024 20.5 4.8 41 63-103 47-96 (124)
109 3zzy_A Polypyrimidine tract-bi 34.5 98 0.0034 20.6 5.3 49 53-104 32-85 (130)
110 2jvo_A Nucleolar protein 3; nu 33.6 89 0.003 19.6 5.5 49 53-104 35-84 (108)
111 1oo0_B CG8781-PA, drosophila Y 33.6 87 0.003 19.5 6.3 50 52-104 29-87 (110)
112 2cq4_A RNA binding motif prote 32.9 80 0.0027 19.9 4.7 48 53-103 29-85 (114)
113 2ywk_A Putative RNA-binding pr 31.5 86 0.0029 18.8 5.1 50 52-104 19-76 (95)
114 1whw_A Hypothetical protein ri 31.3 89 0.0031 18.9 6.1 50 52-104 11-69 (99)
115 2rs2_A Musashi-1, RNA-binding 30.9 1E+02 0.0034 19.3 5.8 52 51-105 27-87 (109)
116 2err_A Ataxin-2-binding protei 30.7 69 0.0024 20.1 4.1 49 53-104 33-88 (109)
117 1wf0_A TDP-43, TAR DNA-binding 30.2 75 0.0026 18.8 4.0 46 53-101 9-58 (88)
118 1x4d_A Matrin 3; structural ge 30.1 1E+02 0.0036 19.3 6.1 55 48-104 14-71 (102)
119 2dnq_A RNA-binding protein 4B; 30.0 90 0.0031 18.5 6.7 51 51-104 10-61 (90)
120 2d9p_A Polyadenylate-binding p 29.8 98 0.0034 18.9 6.4 54 48-104 14-74 (103)
121 1nu4_A U1A RNA binding domain; 29.8 94 0.0032 18.7 6.4 54 51-104 10-70 (97)
122 2dnz_A Probable RNA-binding pr 29.7 93 0.0032 18.6 7.6 59 51-112 7-75 (95)
123 2fy1_A RNA-binding motif prote 29.7 1.1E+02 0.0037 19.5 4.9 50 52-104 10-67 (116)
124 2cpi_A CCR4-NOT transcription 29.5 74 0.0025 20.0 4.1 51 51-104 17-82 (111)
125 2jvr_A Nucleolar protein 3; RN 29.5 1.1E+02 0.0038 19.5 5.3 51 51-104 30-86 (111)
126 1u6f_A Tcubp1, RNA-binding pro 29.5 1.2E+02 0.0041 19.8 5.3 49 53-104 46-103 (139)
127 2cq0_A Eukaryotic translation 29.5 84 0.0029 19.3 4.3 51 51-104 17-76 (103)
128 1uaw_A Mouse-musashi-1; RNP-ty 29.5 81 0.0028 17.9 4.0 42 64-105 12-62 (77)
129 2voo_A Lupus LA protein; RNA-b 29.5 93 0.0032 22.1 4.9 49 53-104 113-169 (193)
130 1x4f_A Matrin 3; structural ge 29.4 1.1E+02 0.0036 19.7 4.7 52 50-103 26-80 (112)
131 2xnq_A Nuclear polyadenylated 29.4 99 0.0034 18.8 6.8 50 53-104 26-76 (97)
132 1x4g_A Nucleolysin TIAR; struc 29.3 1.1E+02 0.0036 19.1 6.2 49 53-104 29-80 (109)
133 2wbr_A GW182, gawky, LD47780P; 29.2 1E+02 0.0035 19.0 6.2 50 51-103 9-61 (89)
134 2a3j_A U1 small nuclear ribonu 29.1 1.2E+02 0.0042 19.8 5.4 53 52-104 32-91 (127)
135 2dnp_A RNA-binding protein 14; 29.1 94 0.0032 18.4 7.5 52 50-104 10-62 (90)
136 2cq1_A PTB-like protein L; RRM 29.0 1.1E+02 0.0037 19.1 6.2 51 50-103 16-69 (101)
137 3md1_A Nuclear and cytoplasmic 28.2 91 0.0031 18.0 5.3 41 64-104 13-62 (83)
138 1x5p_A Negative elongation fac 28.1 1E+02 0.0035 18.6 5.3 48 52-104 18-68 (97)
139 2cqi_A Nucleolysin TIAR; RNA r 28.1 1.1E+02 0.0036 18.7 5.9 50 51-103 17-73 (103)
140 1rk8_A CG8781-PA, CG8781-PA pr 28.0 1.4E+02 0.0049 20.3 6.0 50 52-104 75-133 (165)
141 2khc_A Testis-specific RNP-typ 28.0 1E+02 0.0035 19.5 4.6 41 64-104 52-101 (118)
142 3bs9_A Nucleolysin TIA-1 isofo 27.9 95 0.0032 18.1 5.3 49 53-104 10-67 (87)
143 2dhg_A TRNA selenocysteine ass 27.9 1.1E+02 0.0037 18.7 6.8 55 47-104 7-70 (104)
144 1p1t_A Cleavage stimulation fa 27.7 1E+02 0.0035 18.8 4.4 49 53-104 12-69 (104)
145 1x4b_A Heterogeneous nuclear r 27.6 87 0.003 19.7 4.2 49 53-104 31-88 (116)
146 3ucg_A Polyadenylate-binding p 27.6 98 0.0033 18.2 4.9 40 64-103 18-66 (89)
147 2cq3_A RNA-binding protein 9; 26.9 1.1E+02 0.0038 18.6 7.3 51 51-104 17-74 (103)
148 3mdf_A Peptidyl-prolyl CIS-tra 26.8 98 0.0034 17.9 6.8 51 51-104 9-68 (85)
149 4f02_A Polyadenylate-binding p 26.7 1.3E+02 0.0046 21.4 5.5 51 51-104 17-76 (213)
150 2dgo_A Cytotoxic granule-assoc 26.6 1.2E+02 0.0042 19.0 5.8 51 51-104 17-76 (115)
151 3md3_A Nuclear and cytoplasmic 26.6 1.4E+02 0.0049 19.8 5.5 41 64-104 12-60 (166)
152 1wf1_A RNA-binding protein RAL 26.4 1.2E+02 0.0041 18.8 6.0 50 52-104 30-81 (110)
153 2pe8_A Splicing factor 45; RRM 26.1 1.3E+02 0.0043 18.9 5.0 63 48-110 7-82 (105)
154 2dgt_A RNA-binding protein 30; 25.2 1.1E+02 0.0039 18.1 6.3 51 51-104 12-63 (92)
155 3pgw_S U1-70K; protein-RNA com 25.1 1.3E+02 0.0046 24.7 5.7 51 51-104 104-163 (437)
156 2d9o_A DNAJ (HSP40) homolog, s 24.9 1.3E+02 0.0045 18.7 5.5 40 65-104 30-73 (100)
157 1l3k_A Heterogeneous nuclear r 24.6 1.5E+02 0.0052 20.5 5.4 52 51-105 15-75 (196)
158 2la4_A Nuclear and cytoplasmic 24.5 1.2E+02 0.0043 18.3 5.3 49 53-104 31-82 (101)
159 2dgv_A HnRNP M, heterogeneous 24.0 1.2E+02 0.0041 17.9 6.1 50 52-104 11-67 (92)
160 3n9u_C Cleavage and polyadenyl 23.8 1.8E+02 0.006 19.8 5.4 41 64-104 67-118 (156)
161 3ulh_A THO complex subunit 4; 23.7 1.3E+02 0.0046 18.4 5.6 50 52-104 32-89 (107)
162 2e5h_A Zinc finger CCHC-type a 23.3 1.3E+02 0.0043 17.9 7.6 51 51-104 18-77 (94)
163 2cjk_A Nuclear polyadenylated 22.8 1.5E+02 0.0053 19.7 5.0 43 63-105 98-149 (167)
164 2jrs_A RNA-binding protein 39; 22.7 1.5E+02 0.005 18.5 6.0 50 52-104 29-87 (108)
165 2do0_A HnRNP M, heterogeneous 22.7 1.5E+02 0.005 18.5 5.3 51 51-104 17-75 (114)
166 2x1f_A MRNA 3'-END-processing 22.4 1.3E+02 0.0046 18.0 6.1 41 64-104 14-63 (96)
167 4a8x_A RNA-binding protein wit 22.4 1.2E+02 0.0043 17.6 6.1 41 64-104 16-66 (88)
168 2dgs_A DAZ-associated protein 22.1 1.4E+02 0.0047 18.0 7.8 58 51-111 12-78 (99)
169 2qfj_A FBP-interacting repress 22.1 2.1E+02 0.0072 20.1 7.4 41 64-104 40-89 (216)
170 1fxl_A Paraneoplastic encephal 21.7 1.8E+02 0.0063 19.2 5.6 41 64-104 14-63 (167)
171 2do4_A Squamous cell carcinoma 21.3 1.5E+02 0.005 17.9 6.9 51 51-104 19-77 (100)
172 1h2v_Z 20 kDa nuclear CAP bind 21.3 1.9E+02 0.0066 19.3 5.8 51 51-104 41-100 (156)
173 2dis_A Unnamed protein product 21.1 1.5E+02 0.0053 18.2 5.8 50 52-104 11-71 (109)
174 2cqd_A RNA-binding region cont 20.8 1.6E+02 0.0056 18.4 6.1 51 52-105 20-79 (116)
175 2cpd_A Apobec-1 stimulating pr 20.7 1.5E+02 0.0051 17.9 6.3 50 51-103 17-69 (99)
176 1x5o_A RNA binding motif, sing 20.6 1.6E+02 0.0056 18.3 4.7 50 52-104 28-85 (114)
177 2la6_A RNA-binding protein FUS 20.5 1.5E+02 0.0052 17.8 6.6 51 51-104 15-82 (99)
178 1wi8_A EIF-4B, eukaryotic tran 20.3 1.6E+02 0.0054 18.0 6.2 53 51-107 17-79 (104)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=99.96 E-value=1.1e-28 Score=211.08 Aligned_cols=200 Identities=21% Similarity=0.360 Sum_probs=155.7
Q ss_pred CCCCCCCCCCCCccccccccccC-CCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcccc
Q 047737 40 NKLNLPPSPPRLPIIGNLHQIVQ-NVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIAT 118 (265)
Q Consensus 40 ~~~~~~pgp~~~p~~G~~~~~~~-~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~ 118 (265)
++.+.||||+++|++||++.+.. +.++..+.+|+++||+||++++|+.++|+++||+++++++.+++..|++++.....
T Consensus 5 ~~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~~ 84 (494)
T 3swz_A 5 TGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATL 84 (494)
T ss_dssp -------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHHH
T ss_pred CCCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHHH
Confidence 45678999999999999998742 35788899999999999999999999999999999999999998899888776554
Q ss_pred cccccCCceeEecCCChhHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHH
Q 047737 119 KILLYDGKDLGFAEYGEYWRQLWKICVLELLSN--KRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSN 196 (265)
Q Consensus 119 ~~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~--~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~ 196 (265)
......+.|++++.+|+.|+++|+++ .+.|+. ..++.+.+.+.++++.+++.+.+. .+.++|+.+.+..+++
T Consensus 85 ~~~~~~~~gl~~~~~g~~wr~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~-----~~~~vd~~~~~~~~t~ 158 (494)
T 3swz_A 85 DIASNNRKGIAFADSGAHWQLHRRLA-MATFALFKDGDQKLEKIICQEISTLCDMLATH-----NGQSIDISFPVFVAVT 158 (494)
T ss_dssp HHHTTTTCSSSSSCSSHHHHHHHHHH-HHHTTTTSSSTTCHHHHHHHHHHHHHHHHHHT-----TTEEECCHHHHHHHHH
T ss_pred HHhccCCCCeEeCCCCHHHHHHHHHH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHc-----CCCcccHHHHHHHHHH
Confidence 44444466777777799999999999 999974 446778999999999999999753 4678999999999999
Q ss_pred HHhhHHhccccccchhhcCCcchhHHHHHHHHHHHHhccCCcccccccccccc
Q 047737 197 NIATRCIFGRKVEDLEEENGSGESKFGELTKKNMILLARTCVGDLYPSLKWID 249 (265)
Q Consensus 197 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~ 249 (265)
|+|+.++||.+++ ..++....+.+..+.+........+.+++|++.+++
T Consensus 159 dvi~~~~fG~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~p 207 (494)
T 3swz_A 159 NVISLICFNTSYK----NGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFP 207 (494)
T ss_dssp HHHHHHHHSCCCC----TTCTHHHHHHHHHHHHHHHHCSSSSCCSSCGGGTSC
T ss_pred HHHHHHHcCCcCC----CCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcC
Confidence 9999999999986 222222334444444444444445677889888775
No 2
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.96 E-value=5.7e-29 Score=213.28 Aligned_cols=200 Identities=18% Similarity=0.360 Sum_probs=140.9
Q ss_pred CCCCCCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCccccc
Q 047737 40 NKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATK 119 (265)
Q Consensus 40 ~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~ 119 (265)
++.+.||||+++|++|+++.+ ..+++..+.+++++||+||++++|+.++|+++||+++++|+.++...|.+++......
T Consensus 6 ~~~~~pPgP~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~ 84 (507)
T 3pm0_A 6 SSKGKPPGPFAWPLIGNAAAV-GQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFR 84 (507)
T ss_dssp -----------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHHH
T ss_pred CCCCCCcCCCCCCeeCchhhc-CccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHHH
Confidence 455778999999999999998 7889999999999999999999999999999999999999988888888776654433
Q ss_pred ccccCCceeEecCCChhHHHHHHHHHHHhcChHH------HHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHH
Q 047737 120 ILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKR------VKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILA 193 (265)
Q Consensus 120 ~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~------l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~ 193 (265)
... .|.+++++.+|+.|+++|+++ .+.|+... ++.+.+.+.++++++++.+.+. ..++.++|+.+.+..
T Consensus 85 ~~~-~g~~l~~~~~g~~w~~~R~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~vd~~~~~~~ 159 (507)
T 3pm0_A 85 VVS-GGRSMAFGHYSEHWKVQRRAA-HSMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRG---SADGAFLDPRPLTVV 159 (507)
T ss_dssp HGG-GGTCSSSSCSSHHHHHHHHHH-HHHHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHT---TGGGCCBCCHHHHHH
T ss_pred hhc-CCCceEECCCChHHHHHHHHH-HHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhh---cccCCCcChHHHHHH
Confidence 332 266776777799999999999 88775433 3448899999999999999875 455678999999999
Q ss_pred HHHHHhhHHhccccccchhhcCCcchhHHHHHHHHHHHHhccCCcccccccccccc
Q 047737 194 VSNNIATRCIFGRKVEDLEEENGSGESKFGELTKKNMILLARTCVGDLYPSLKWID 249 (265)
Q Consensus 194 ~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~ 249 (265)
+++|+++.++||.+++ ..++...++.+.+..+........+...+|++.+++
T Consensus 160 ~~~dvi~~~~fG~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp 211 (507)
T 3pm0_A 160 AVANVMSAVCFGCRYS----HDDPEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFP 211 (507)
T ss_dssp HHHHHHHHHHTSCCCC----TTCHHHHHHTSCHHHHHHHHSTTCCTTTCGGGGGSC
T ss_pred HHHHHHHHHHccccCC----CCCHHHHHHHHHHHHHHHhcccchHHHHhHHHHHcC
Confidence 9999999999999987 322333344444555555554444567788887774
No 3
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.95 E-value=5.9e-28 Score=206.85 Aligned_cols=163 Identities=14% Similarity=0.188 Sum_probs=134.3
Q ss_pred CCCCCCCCCCCccccccccccC---CCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCccc
Q 047737 41 KLNLPPSPPRLPIIGNLHQIVQ---NVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIA 117 (265)
Q Consensus 41 ~~~~~pgp~~~p~~G~~~~~~~---~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~ 117 (265)
+.+.||||+++|++||++.+.. ...+..+.+++++||+||++++|+.+.|+++||+++++++.+ ..|++++....
T Consensus 43 ~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~~~~ 120 (503)
T 3s79_A 43 GTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFGSKL 120 (503)
T ss_dssp --CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCCCHH
T ss_pred ccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcchhhh
Confidence 4567899999999999988721 244567889999999999999999999999999999999954 35666544322
Q ss_pred -ccccccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHH
Q 047737 118 -TKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSN 196 (265)
Q Consensus 118 -~~~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~ 196 (265)
.......+.|+++..+|+.|+++|+++ +++|+..+++.+.+.+.++++++++.|.+. .++++++|+.+.+..+++
T Consensus 121 ~~~~~~~~~~~~~~~~~g~~w~~~Rr~~-~~~f~~~~l~~~~~~~~~~~~~~l~~l~~~---~~~~~~vdl~~~~~~~~~ 196 (503)
T 3s79_A 121 GLQCIGMHEKGIIFNNNPELWKTTRPFF-MKALSGPGLVRMVTVCAESLKTHLDRLEEV---TNESGYVDVLTLLRRVML 196 (503)
T ss_dssp HHHHHTCTTSSSTTCCCHHHHHHHHHHH-HHHTSTHHHHHHHHHHHHHHHHHHTTGGGT---BCTTSCBCHHHHHHHHHH
T ss_pred hhhhhccCCCceeeCCCccHHHHHHHhh-hHhhChHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCeEcHHHHHHHHHH
Confidence 222223366777777799999999999 999999999999999999999999988764 455678999999999999
Q ss_pred HHhhHHhcccccc
Q 047737 197 NIATRCIFGRKVE 209 (265)
Q Consensus 197 ~vi~~~~fG~~~~ 209 (265)
|+++.++||.+++
T Consensus 197 ~vi~~~~fG~~~~ 209 (503)
T 3s79_A 197 DTSNTLFLRIPLD 209 (503)
T ss_dssp HHHHHHHTCCCCC
T ss_pred HHHHHHHcCcccC
Confidence 9999999999885
No 4
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=203.23 Aligned_cols=200 Identities=20% Similarity=0.390 Sum_probs=149.8
Q ss_pred CCCCCCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCccccc
Q 047737 40 NKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATK 119 (265)
Q Consensus 40 ~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~ 119 (265)
++.+.+|||+++|++|+++.+ .++++..+.+++++|||||++++|+.++++++||+++++|+.++...|++++......
T Consensus 13 ~~lp~~PgP~~~p~~G~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~~ 91 (495)
T 2hi4_A 13 KGLKSPPEPWGWPLLGHVLTL-GKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTST 91 (495)
T ss_dssp TTCBCCCCCCCBTTTBTHHHH-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHHH
T ss_pred CCCCCCCCCCCCcceeeHHhc-CccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHHH
Confidence 344445999999999999888 6788899999999999999999999999999999999999988777787765433222
Q ss_pred ccccCCceeEec-CCChhHHHHHHHHHHHhcCh---HHH---H---HHHHHHHHHHHHHHHHHHHhcccCCCCccccHHH
Q 047737 120 ILLYDGKDLGFA-EYGEYWRQLWKICVLELLSN---KRV---K---SAQHIRVEEVSCLINKIRRSCINGHGGSTINLSE 189 (265)
Q Consensus 120 ~~~~~~~~~~~~-~~g~~w~~~R~~l~~~~f~~---~~l---~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~ 189 (265)
... .+.+++++ .+|+.|+++|+++ +++|+. .++ + .+.+.+.++++++++.|.+. +.+|+++|+.+
T Consensus 92 ~~~-~~~~l~~~~~~g~~w~~~Rr~~-~~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~d~~~ 166 (495)
T 2hi4_A 92 LIT-DGQSLTFSTDSGPVWAARRRLA-QNALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQEL---MAGPGHFDPYN 166 (495)
T ss_dssp TST-TSCCTTTSSCCSHHHHHHHHHH-HHHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHH---HHTTSCBCHHH
T ss_pred Hhc-CCCCEEEcCCCChHHHHHHHHH-HHHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHh---ccCCCccchHH
Confidence 222 25666665 4699999999999 998653 222 2 68899999999999999864 33467899999
Q ss_pred HHHHHHHHHhhHHhccccccchhhcCCcchhHHHHHHHHHHHHhccCCcccccccccccc
Q 047737 190 MILAVSNNIATRCIFGRKVEDLEEENGSGESKFGELTKKNMILLARTCVGDLYPSLKWID 249 (265)
Q Consensus 190 ~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~ 249 (265)
.+..+++|+|+.++||.+++ ..+++..++.+..+.+............+|++.+++
T Consensus 167 ~~~~~~~dvi~~~~fG~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp 222 (495)
T 2hi4_A 167 QVVVSVANVIGAMCFGQHFP----ESSDEMLSLVKNTHEFVETASSGNPLDFFPILRYLP 222 (495)
T ss_dssp HHHHHHHHHHHHHHHGGGSC----TTCHHHHHHHTTTHHHHTTSSTTCGGGTCGGGGGSC
T ss_pred HHHHHHHHHHHHHHcCCCCC----CCCHHHHHHHHHHHHHHHhcccchHHHHhHHHHhcC
Confidence 99999999999999999886 222222333333444443332223456678776654
No 5
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.95 E-value=6.4e-28 Score=206.26 Aligned_cols=194 Identities=19% Similarity=0.287 Sum_probs=142.1
Q ss_pred ccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcc
Q 047737 37 RSTNKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSI 116 (265)
Q Consensus 37 ~~~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~ 116 (265)
+..++.+.||||++ ++++..++++..+.+++++|||||++++|+.+.|+++||+++++|+.++...|++++...
T Consensus 23 ~~~~~~~lPPGP~~------l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~ 96 (496)
T 3qz1_A 23 WKLRNLHLPPLVPG------FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIP 96 (496)
T ss_dssp ------CCCCBCSC------SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCT
T ss_pred hhccCCCCCcCCcc------ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcc
Confidence 33456688999986 444446789999999999999999999999999999999999999998888888776554
Q ss_pred cccccccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHH
Q 047737 117 ATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSN 196 (265)
Q Consensus 117 ~~~~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~ 196 (265)
.......++.+++++++|+.|+++||++ ++.|+.+.++.+.+.+.++++++++.+.+ .+|+++|+.+.+..+++
T Consensus 97 ~~~~~~~~~~~l~~~~~g~~w~~~Rr~~-~~~f~~~~~~~~~~~i~~~~~~l~~~l~~-----~~~~~vd~~~~~~~~~~ 170 (496)
T 3qz1_A 97 SYKLVSQRCQDISLGDYSLLWKAHKKLT-RSALLLGTRSSMEPWVDQLTQEFCERMRV-----QAGAPVTIQKEFSLLTC 170 (496)
T ss_dssp TTTTSCTTCCCSSSSCCSHHHHHHHHHH-HHHHHC--CCCHHHHHHHHHHHHHHHHHT-----TCSCCCHHHHHHTHHHH
T ss_pred hHHHhcCCCCceEECCCCHHHHHHHHHH-HHHHhhccHhhHHHHHHHHHHHHHHHHHh-----cCCCccCHHHHHHHHHH
Confidence 3333322223665555599999999999 99999877788999999999999999974 34678999999999999
Q ss_pred HHhhHHhccccccchhhcCCcchhHHHHHHHHHHHHhcc--CCcccccccccccc
Q 047737 197 NIATRCIFGRKVEDLEEENGSGESKFGELTKKNMILLAR--TCVGDLYPSLKWID 249 (265)
Q Consensus 197 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~P~l~~~~ 249 (265)
|+|+.++||. .+ +....++.+.+..++..... ..+...+|++.+++
T Consensus 171 dvi~~~~fG~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp 218 (496)
T 3qz1_A 171 SIICYLTFGN-KE------DTLVHAFHDCVQDLMKTWDHWSIQILDMVPFLRFFP 218 (496)
T ss_dssp HHTTTTSTTC-CC------HHHHHHHHHHHHTTTTTTSSHHHHHHHHCGGGCCCC
T ss_pred HHHHHHhcCC-CC------ChHHHHHHHHHHHHHHHhccchhHHHHhHHHHHhCC
Confidence 9999999998 22 02223444444443332221 12345678777664
No 6
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.95 E-value=2e-27 Score=202.65 Aligned_cols=158 Identities=19% Similarity=0.312 Sum_probs=136.6
Q ss_pred CCCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhc-cccccCCCCccccccc
Q 047737 43 NLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTH-DIAFSNRPRSIATKIL 121 (265)
Q Consensus 43 ~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~-~~~~~~~~~~~~~~~~ 121 (265)
+.||||+++|++|+++.+ ..+++.++.+++++||+||++++|+.+.|+++||+++++|+.++ ...|.+++........
T Consensus 14 ~~~PGP~~~PliGn~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~~~~~ 92 (485)
T 3nxu_A 14 LGIPGPTPLPFLGNILSY-HKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFM 92 (485)
T ss_dssp HTCCCCCCBTTTBTGGGG-GGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSCCGGG
T ss_pred CCCCCCCCcCeecCcHHh-hcChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCccccccccc
Confidence 446999999999999998 77888999999999999999999999999999999999999877 5667666543332211
Q ss_pred ccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHHHHhhH
Q 047737 122 LYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATR 201 (265)
Q Consensus 122 ~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~~vi~~ 201 (265)
+.++ +..+|+.|+++|+++ +|+|+.++++.+.+.+.++++++++.+.+. .++|+++|+.+.+..+++|+|+.
T Consensus 93 ---~~~l-~~~~g~~w~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---~~~g~~~d~~~~~~~~~~dvi~~ 164 (485)
T 3nxu_A 93 ---KSAI-SIAEDEEWKRLRSLL-SPTFTSGKLKEMVPIIAQYGDVLVRNLRRE---AETGKPVTLKDVFGAYSMDVITS 164 (485)
T ss_dssp ---GGST-TTCCHHHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTCCEEHHHHHHHHHHHHHHH
T ss_pred ---ccCc-cccCCcHHHHHHhhc-ChhcCHHHHHHHHHHHHHHHHHHHHHHHHH---hccCCcCcHHHHHHHHHHHHHHH
Confidence 4454 445699999999999 999999999999999999999999999764 34577999999999999999999
Q ss_pred Hhcccccc
Q 047737 202 CIFGRKVE 209 (265)
Q Consensus 202 ~~fG~~~~ 209 (265)
++||.+++
T Consensus 165 ~~fG~~~~ 172 (485)
T 3nxu_A 165 TSFGVNID 172 (485)
T ss_dssp HHHSCCCC
T ss_pred HHcCCccc
Confidence 99999997
No 7
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.94 E-value=1.7e-26 Score=196.67 Aligned_cols=191 Identities=16% Similarity=0.219 Sum_probs=147.9
Q ss_pred cCCCCCCCCCCCCCcccccccccc----CCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCC
Q 047737 38 STNKLNLPPSPPRLPIIGNLHQIV----QNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRP 113 (265)
Q Consensus 38 ~~~~~~~~pgp~~~p~~G~~~~~~----~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~ 113 (265)
..++.+.+|||+++|++|+++.+. .++++..+.+++++||+||++++|+.+.|+++||+++++|+.++ ..|.+++
T Consensus 19 ~~~pl~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~~r~ 97 (482)
T 3k9v_A 19 ETRNVTDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHPQRL 97 (482)
T ss_dssp CCEEGGGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSCCCC
T ss_pred ccCCCCCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCCCCC
Confidence 345667789999999999998773 24678889999999999999999999999999999999999874 4676665
Q ss_pred Cccc---ccccccCCceeEecCCChhHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCccccHH
Q 047737 114 RSIA---TKILLYDGKDLGFAEYGEYWRQLWKICVLELL-SNKRVKSAQHIRVEEVSCLINKIRRSCINGH-GGSTINLS 188 (265)
Q Consensus 114 ~~~~---~~~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f-~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~vd~~ 188 (265)
.... .......+.|++. .+|+.|+++||.+ .+.| +.+.++.+.+.+.++++.+++.+.+. +. +|+++|+.
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~-~~g~~w~~~Rr~~-~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~---~~~~g~~vd~~ 172 (482)
T 3k9v_A 98 EIKPWKAYRDHRNEAYGLMI-LEGQEWQRVRSAF-QKKLMKPVEIMKLDKKINEVLADFLERMDEL---CDERGRIPDLY 172 (482)
T ss_dssp CCHHHHHHHHHHTCCCCTTT-CCHHHHHHHHHHH-HHHHTCHHHHGGGHHHHHHHHHHHHHHHHHH---CCTTSCCTTHH
T ss_pred CchHHHHHHHhcCCCCCcee-CCCchHHHHHHHh-hHHhcChHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCCCHH
Confidence 4321 1112122556544 4599999999999 8886 78889999999999999999999875 43 56789999
Q ss_pred HHHHHHHHHHhhHHhccccccchhhcCCcchhHHHHHHHHHHHHhc
Q 047737 189 EMILAVSNNIATRCIFGRKVEDLEEENGSGESKFGELTKKNMILLA 234 (265)
Q Consensus 189 ~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (265)
+.+..+++|+|+.++||.+++.......+...++.+.+..++....
T Consensus 173 ~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (482)
T 3k9v_A 173 SELNKWSFESICLVLYEKRFGLLQKETEEEALTFITAIKTMMSTFG 218 (482)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCSSSTTSTTSSHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHcccccCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999962111111334566666666655433
No 8
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.94 E-value=2e-26 Score=196.29 Aligned_cols=199 Identities=22% Similarity=0.365 Sum_probs=148.9
Q ss_pred CCCCCCCCCCCCccccccccccCCC--chhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCccc
Q 047737 40 NKLNLPPSPPRLPIIGNLHQIVQNV--PHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIA 117 (265)
Q Consensus 40 ~~~~~~pgp~~~p~~G~~~~~~~~~--~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~ 117 (265)
++.+.||||+++|++|+++.+.... ++..+.+++++||+|+++++|+.+.++++||+++++|+.++...|++++....
T Consensus 9 ~~~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~ 88 (481)
T 3czh_A 9 RPMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPL 88 (481)
T ss_dssp ---CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHH
T ss_pred CCCCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHH
Confidence 3456789999999999998773233 78899999999999999999999999999999999999887777877654332
Q ss_pred ccccccCCceeEecCCChhHHHHHHHHHHHhcChHHH--HHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHH
Q 047737 118 TKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRV--KSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVS 195 (265)
Q Consensus 118 ~~~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t 195 (265)
...... +.++++..+|+.|+++|+++ +++|+..++ +.+.+.+.++++++++.+.+. +|+++|+.+.+..++
T Consensus 89 ~~~~~~-~~~~~~~~~g~~w~~~R~~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~-----~~~~~d~~~~~~~~~ 161 (481)
T 3czh_A 89 FMKMTK-MGGLLNSRYGRGWVDHRRLA-VNSFRYFGYGQKSFESKILEETKFFNDAIETY-----KGRPFDFKQLITNAV 161 (481)
T ss_dssp HHHHHT-TCSSTTCCSSHHHHHHHHHH-HHHHHHTTTTSTTHHHHHHHHHHHHHHHHHTT-----TTCCBCCHHHHHHHH
T ss_pred HHhhcC-CCCeEeCCCChHHHHHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc-----CCCCcCHHHHHHHHH
Confidence 222221 34555566799999999999 999987654 578999999999999999742 356899999999999
Q ss_pred HHHhhHHhccccccchhhcCCcchhHHHHHHHHHHHHhccCC--cccccccccccc
Q 047737 196 NNIATRCIFGRKVEDLEEENGSGESKFGELTKKNMILLARTC--VGDLYPSLKWID 249 (265)
Q Consensus 196 ~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~P~l~~~~ 249 (265)
+|+|+.++||.+++ ..+++..++.+.+..+........ +...+|++.+++
T Consensus 162 ~~vi~~~~fG~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp 213 (481)
T 3czh_A 162 SNITNLIIFGERFT----YEDTDFQHMIELFSENVELAASASVFLYNAFPWIGILP 213 (481)
T ss_dssp HHHHHHHHHSSCCC----TTCHHHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGGCS
T ss_pred HHHHHHHHcCCCCC----CCCHHHHHHHHHHHHHHhhhccchhHHhhhhHHHHhCC
Confidence 99999999999986 222223344444555444332111 345678775554
No 9
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.94 E-value=7.7e-26 Score=192.51 Aligned_cols=164 Identities=24% Similarity=0.405 Sum_probs=135.6
Q ss_pred CCCCCCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCccccc
Q 047737 40 NKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATK 119 (265)
Q Consensus 40 ~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~ 119 (265)
++.+.||||+++|++||++++...+++..+.+++++|||||++++|+.++|+|+||+++++|+.+++..|++|+......
T Consensus 7 s~~kLPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~~~ 86 (479)
T 3tbg_A 7 SKGKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQ 86 (479)
T ss_dssp --CCCCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGGGG
T ss_pred CCCCCCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHHHH
Confidence 44578999999999999998866788899999999999999999999999999999999999999888898887655444
Q ss_pred ccc--cCCceeEecCCChhHHHHHHHHHHHhcChHHHHH--HHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHH
Q 047737 120 ILL--YDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKS--AQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVS 195 (265)
Q Consensus 120 ~~~--~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t 195 (265)
... ..+.+++++.+|+.|+++|+.+ .+.|+...+.. +...+......+.+.+.. ..+..+|+.+.+..++
T Consensus 87 ~~~~~~~~~~~~~~~~g~~w~~~R~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~ 160 (479)
T 3tbg_A 87 ILGFGPRSQGVFLARYGPAWREQRRFS-VSTLRNLGLGKKSLEQWVTEEAACLCAAFAN-----HSGRPFRPNGLLDKAV 160 (479)
T ss_dssp GGTCBTTBCCSTTCCSSHHHHHHHHHH-HHHHHHTTSTTCHHHHHHHHHHHHHHHHHHT-----TTTCCBCTHHHHHHHH
T ss_pred HhccCCCCCceeeCCCCHHHHHHHHHH-HHHhcchhhhHHHHHHHHHHHHHHHHHHHHh-----ccCCcccHHHHHHHHH
Confidence 332 2245667777899999999999 99998776643 456666666666666653 3567899999999999
Q ss_pred HHHhhHHhcccccc
Q 047737 196 NNIATRCIFGRKVE 209 (265)
Q Consensus 196 ~~vi~~~~fG~~~~ 209 (265)
+|+++.++||.+++
T Consensus 161 ~~~~~~~~fg~~~~ 174 (479)
T 3tbg_A 161 SNVIASLTCGRRFE 174 (479)
T ss_dssp HHHHHHHHHSCCCC
T ss_pred HHHHHHhhcCCccc
Confidence 99999999999997
No 10
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.94 E-value=4.9e-26 Score=193.62 Aligned_cols=179 Identities=23% Similarity=0.379 Sum_probs=140.6
Q ss_pred CCCCCCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCccccc
Q 047737 40 NKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATK 119 (265)
Q Consensus 40 ~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~ 119 (265)
++.+.||||+++|++||++.+...+++..+.+++++||+||++++|+.+.|+++||+++++|+.++...|++++......
T Consensus 7 ~~~~lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~~ 86 (476)
T 3e6i_A 7 SKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAFH 86 (476)
T ss_dssp ---CCCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGGG
T ss_pred CCCCCCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchhh
Confidence 45678999999999999998855788899999999999999999999999999999999999998877887776544443
Q ss_pred ccccCCceeEecCCChhHHHHHHHHHHHhcChHHH--HHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHHH
Q 047737 120 ILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRV--KSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNN 197 (265)
Q Consensus 120 ~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~~ 197 (265)
... +.++++ .+|+.|+++|++. .+.|+...+ +.+.+.+.++++++++.+.+ ..|+++|+.+.+..+++|
T Consensus 87 ~~~--~~~l~~-~~g~~w~~~Rr~~-~~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~-----~~~~~~d~~~~~~~~~~d 157 (476)
T 3e6i_A 87 AHR--DRGIIF-NNGPTWKDIRRFS-LTTLRNYGMGKQGNESRIQREAHFLLEALRK-----TQGQPFDPTFLIGCAPCN 157 (476)
T ss_dssp GGT--TSSSTT-CCSTTHHHHHHHH-HHHHHHTC-CCSHHHHHHHHHHHHHHHHHHT-----TTTSCBCTHHHHTHHHHH
T ss_pred eec--CCCEEe-cCCcHHHHHHHHH-HHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-----hCCCCcChHHHHHHHHHH
Confidence 333 235544 4599999999988 888876544 34678999999999999974 246789999999999999
Q ss_pred HhhHHhccccccchhhcCCcchhHHHHHHHHHHH
Q 047737 198 IATRCIFGRKVEDLEEENGSGESKFGELTKKNMI 231 (265)
Q Consensus 198 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (265)
+|+.++||.+++ ..++...++.+.+...+.
T Consensus 158 vi~~~~fG~~~~----~~~~~~~~~~~~~~~~~~ 187 (476)
T 3e6i_A 158 VIADILFRKHFD----YNDEKFLRLMYLFNENFH 187 (476)
T ss_dssp HHHHHHHSCCCC----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCC----CCCHHHHHHHHHHHHHHH
Confidence 999999999997 322223344444444443
No 11
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.94 E-value=5e-26 Score=193.64 Aligned_cols=180 Identities=24% Similarity=0.392 Sum_probs=142.2
Q ss_pred CCCCCCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCccccc
Q 047737 40 NKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATK 119 (265)
Q Consensus 40 ~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~ 119 (265)
++.+.||||+++|++|+++.+...+++..+.+++++||+|+++++|+.+.++++||+++++|+.++...|++++......
T Consensus 7 ~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~ 86 (476)
T 2fdv_A 7 SKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFD 86 (476)
T ss_dssp -CCBCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHH
T ss_pred ccCCCCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHh
Confidence 34467899999999999988745778899999999999999999999999999999999999977666777654432222
Q ss_pred ccccCCceeEecCCChhHHHHHHHHHHHhcChHHH--HHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHHH
Q 047737 120 ILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRV--KSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNN 197 (265)
Q Consensus 120 ~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~~ 197 (265)
... .+.++++. +|+.|+++|+++ .++|+...+ +.+.+.+.++++++++.|.+. +|+++|+.+.+..+++|
T Consensus 87 ~~~-~~~~l~~~-~g~~~~~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~-----~~~~vd~~~~~~~~~~~ 158 (476)
T 2fdv_A 87 WVF-KGYGVVFS-NGERAKQLRRFS-IATLRDFGVGKRGIEERIQEEAGFLIDALRGT-----GGANIDPTFFLSRTVSN 158 (476)
T ss_dssp HHH-TTCSSSSC-CHHHHHHHHHHH-HHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHT-----TTCCBCCHHHHHHHHHH
T ss_pred hhc-CCCCeEec-CchHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHhc-----CCCccChHHHHHHHHHH
Confidence 222 15565555 599999999999 999988776 789999999999999999753 35689999999999999
Q ss_pred HhhHHhccccccchhhcCCcchhHHHHHHHHHHH
Q 047737 198 IATRCIFGRKVEDLEEENGSGESKFGELTKKNMI 231 (265)
Q Consensus 198 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (265)
+|+.++||.+++ ..+++..++.+.+..+..
T Consensus 159 vi~~~~fG~~~~----~~~~~~~~~~~~~~~~~~ 188 (476)
T 2fdv_A 159 VISSIVFGDRFD----YKDKEFLSLLRMMLGIFQ 188 (476)
T ss_dssp HHHHHHHSSCCC----TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcCC----CCCHHHHHHHHHHHHHHH
Confidence 999999999987 222223344444444443
No 12
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.93 E-value=6.8e-25 Score=186.65 Aligned_cols=162 Identities=29% Similarity=0.566 Sum_probs=134.5
Q ss_pred CCCCCCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCccccc
Q 047737 40 NKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATK 119 (265)
Q Consensus 40 ~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~ 119 (265)
++.+.||||+++|++|+++.+...+++..+.+++++||+|+++++|+.+.|+++||+.+++|+.++...|.+++......
T Consensus 7 ~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~ 86 (476)
T 1po5_A 7 SKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVD 86 (476)
T ss_dssp --CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGC
T ss_pred CCCCCCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHHH
Confidence 34467899999999999988745778899999999999999999999999999999999999987776777655432222
Q ss_pred ccccCCceeEecCCChhHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHHH
Q 047737 120 ILLYDGKDLGFAEYGEYWRQLWKICVLELLSNK--RVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNN 197 (265)
Q Consensus 120 ~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~~ 197 (265)
... .+.+++++ +|+.|+++|+++ .+.|+.. .++.+.+.+.++++++++.|.+. .|+++|+.+.+..+++|
T Consensus 87 ~~~-~~~~l~~~-~g~~w~~~Rr~~-~~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~-----~~~~~d~~~~~~~~~~~ 158 (476)
T 1po5_A 87 PIF-QGYGVIFA-NGERWRALRRFS-LATMRDFGMGKRSVEERIQEEARCLVEELRKS-----KGALLDNTLLFHSITSN 158 (476)
T ss_dssp SCC-SSCCCCCS-SHHHHHHHHHHH-HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHT-----TTCCBCCHHHHHHHHHH
T ss_pred hhc-CCCceEec-CCcHHHHHHHHH-HHHHHHhCCChhHHHHHHHHHHHHHHHHHHhc-----CCCccCHHHHHHHHHHH
Confidence 221 25566555 699999999998 9999887 55788999999999999999753 35689999999999999
Q ss_pred HhhHHhcccccc
Q 047737 198 IATRCIFGRKVE 209 (265)
Q Consensus 198 vi~~~~fG~~~~ 209 (265)
+|+.++||.+++
T Consensus 159 vi~~~~fG~~~~ 170 (476)
T 1po5_A 159 IICSIVFGKRFD 170 (476)
T ss_dssp HHHHHHHSSCCC
T ss_pred HHHHHHcCCCCC
Confidence 999999999987
No 13
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.93 E-value=4.1e-26 Score=192.70 Aligned_cols=191 Identities=19% Similarity=0.230 Sum_probs=152.4
Q ss_pred CCCCCCCCC-CccccccccccCCCchhHHHHHHhhcC-CeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCccccc
Q 047737 42 LNLPPSPPR-LPIIGNLHQIVQNVPHRSLKALSDRYG-PIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATK 119 (265)
Q Consensus 42 ~~~~pgp~~-~p~~G~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~ 119 (265)
.+.||||++ +|++||++.+ ..+++.++.+++++|| +||++++++.+.++++||+++++++.++...+++++......
T Consensus 2 ~~~PPg~p~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~ 80 (450)
T 3gw9_A 2 GKLPPVYPVTVPILGHIIQF-GKSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMV 80 (450)
T ss_dssp CSCCCBCCCCSTTTBTHHHH-HHCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGH
T ss_pred CCCCCCCCCCcchhccHHHH-ccCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHH
Confidence 467899665 9999999988 6788999999999999 999999999999999999999999988777777765443333
Q ss_pred ccccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH-HHHHhcccCCCCccccHHHHHHHHHHHH
Q 047737 120 ILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLIN-KIRRSCINGHGGSTINLSEMILAVSNNI 198 (265)
Q Consensus 120 ~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~vd~~~~~~~~t~~v 198 (265)
... |.|+++..+|+.|+++|+++ +++|+.++++.+.+.+.++++++++ .|.+ .++++|+.+.+..+++|+
T Consensus 81 ~~~--g~~~~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~------~~~~vd~~~~~~~~~~~~ 151 (450)
T 3gw9_A 81 PVF--GEGVAYAAPYPRMREQLNFL-AEELTIAKFQNFVPAIQHEVRKFMAANWDK------DEGEINLLEDCSTMIINT 151 (450)
T ss_dssp HHH--CTTSGGGSCHHHHHHHHHHH-HHTTSGGGCTTHHHHHHHHHHHHHHHHSCS------SEEEEEHHHHHHHHHHHH
T ss_pred HHh--cCCcccCCCcHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcc------CCCcccHHHHHHHHHHHH
Confidence 333 56666666799999999999 9999999999999999999999998 5531 356899999999999999
Q ss_pred hhHHhccccccchhhcCCcchhHHHHHHHHHHHHhccCCcccccccccccc
Q 047737 199 ATRCIFGRKVEDLEEENGSGESKFGELTKKNMILLARTCVGDLYPSLKWID 249 (265)
Q Consensus 199 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~ 249 (265)
++.++||.+++. . .+..++.+.+..+..... .....+|++.+++
T Consensus 152 i~~~~fG~~~~~----~-~~~~~~~~~~~~~~~~~~--~~~~~~P~l~~lp 195 (450)
T 3gw9_A 152 ACQCLFGEDLRK----R-LDARRFAQLLAKMESSLI--PAAVFLPILLKLP 195 (450)
T ss_dssp HHHHHSCHHHHH----H-SCHHHHHHHHHHHHHTCC--GGGGTCGGGGGSC
T ss_pred HHHHHcCcchhh----h-hhhHHHHHHHHHHHhccc--cchhcccchhccC
Confidence 999999998862 1 124456665555543222 2345678776664
No 14
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.93 E-value=2e-25 Score=189.93 Aligned_cols=162 Identities=28% Similarity=0.463 Sum_probs=128.1
Q ss_pred CCCCCCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCccccc
Q 047737 40 NKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATK 119 (265)
Q Consensus 40 ~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~ 119 (265)
++.+.||||+++|++|+++.+...+++..+.+++++||+|+++++|+.+.|+++||+++++|+.++...|.+++......
T Consensus 8 ~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~~ 87 (477)
T 1r9o_A 8 GRGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAE 87 (477)
T ss_dssp -CCBCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCC
T ss_pred CCCCCCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhhh
Confidence 34467899999999999988734577889999999999999999998899999999999999977766777654322222
Q ss_pred ccccCCceeEecCCChhHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHHH
Q 047737 120 ILLYDGKDLGFAEYGEYWRQLWKICVLELLSNK--RVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNN 197 (265)
Q Consensus 120 ~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~--~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~~ 197 (265)
... .|.+++++ +|+.|+++|+++ .+.|+.. .++.+.+.+.++++++++.|.+. .++++|+.+.+..+++|
T Consensus 88 ~~~-~~~~l~~~-~g~~w~~~Rr~~-~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~-----~~~~vd~~~~~~~~~~~ 159 (477)
T 1r9o_A 88 RAN-RGFGIVFS-NGKKWKEIRRFS-LMTLRNFGMGKRSIEDRVQEEARCLVEELRKT-----KASPCDPTFILGCAPCN 159 (477)
T ss_dssp TTT-CTTSSTTC-CHHHHHHHHHHH-HHHHTTSSSCSSCHHHHHHHHHHHHHHHHHTT-----TTSCBCTHHHHHHHHHH
T ss_pred hcc-CCCceEec-CChHHHHHHHHH-HHHHHHhCCChHHHHHHHHHHHHHHHHHHHhc-----CCCccChHHHHHHHHHH
Confidence 221 24565554 699999999998 9999887 44678999999999999999742 35689999999999999
Q ss_pred HhhHHhcccccc
Q 047737 198 IATRCIFGRKVE 209 (265)
Q Consensus 198 vi~~~~fG~~~~ 209 (265)
+|+.++||.+++
T Consensus 160 vi~~~~fG~~~~ 171 (477)
T 1r9o_A 160 VICSIIFHKRFD 171 (477)
T ss_dssp HHHHHHHSCCCC
T ss_pred HHHHHHccCcCC
Confidence 999999999987
No 15
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.92 E-value=1.4e-25 Score=190.20 Aligned_cols=158 Identities=14% Similarity=0.213 Sum_probs=135.8
Q ss_pred CCCCCCCCCC-CccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcccc-
Q 047737 41 KLNLPPSPPR-LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIAT- 118 (265)
Q Consensus 41 ~~~~~pgp~~-~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~- 118 (265)
..+.||+|++ +|++||++.+ ..+++.++.+++++|||||++++++.+.|+++||+++++++.++...+++++.....
T Consensus 9 g~~~PP~~~~~lP~iG~~~~~-~~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~ 87 (461)
T 3ld6_A 9 GVKSPPYIFSPIPFLGHAIAF-GKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLT 87 (461)
T ss_dssp -CCCCCBCCCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHH
T ss_pred CCCCCCCCCCCcCeeeeHHHh-hhCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhh
Confidence 3456788764 9999999998 788999999999999999999999999999999999999998887777665433222
Q ss_pred cccccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHHHH
Q 047737 119 KILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNI 198 (265)
Q Consensus 119 ~~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~~v 198 (265)
.... |+++++..+|+.|+++|+++ .++|+.+.++.+.+.+.++++++++.|.+ ++.+|+.+.+..+++++
T Consensus 88 ~~~~--g~~~~~~~~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 157 (461)
T 3ld6_A 88 TPVF--GKGVAYDVPNPVFLEQKKML-KSGLNIAHFKQHVSIIEKETKEYFESWGE-------SGEKNVFEALSELIILT 157 (461)
T ss_dssp HHHH--CTTSGGGSCHHHHHHHHHHH-HHHSSHHHHHHHHHHHHHHHHHHGGGGCS-------EEEEEHHHHHHHHHHHH
T ss_pred hccC--CCccccCCCcHHHHHHHHhc-cccccHHHHhhhhHHHHHHHHHHHHHHhh-------cCCccHHHHHHHHHHHH
Confidence 2222 67777777899999999999 99999999999999999999999888753 35789999999999999
Q ss_pred hhHHhcccccc
Q 047737 199 ATRCIFGRKVE 209 (265)
Q Consensus 199 i~~~~fG~~~~ 209 (265)
++.++||.+++
T Consensus 158 i~~~~fG~~~~ 168 (461)
T 3ld6_A 158 ASHCLHGKEIR 168 (461)
T ss_dssp HHHHHTCHHHH
T ss_pred HHHHHcCcchh
Confidence 99999999886
No 16
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.92 E-value=7.1e-24 Score=180.12 Aligned_cols=178 Identities=17% Similarity=0.231 Sum_probs=138.1
Q ss_pred CCCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCccccccc-
Q 047737 43 NLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATKIL- 121 (265)
Q Consensus 43 ~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~- 121 (265)
+.||||+++|++|+++.+..++++..+.+++++||||+++++++.+.++++||+++++|+.+. .|.+... ......
T Consensus 3 ~~~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~~--~f~~~~~-~~~~~~~ 79 (470)
T 2ij2_A 3 KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDES--RFDKNLS-QALKFVR 79 (470)
T ss_dssp CCCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCTT--TEEECCC-HHHHHHH
T ss_pred CCCCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhhc--CcCcCch-hHHHHHH
Confidence 457999999999999988445788889999999999999999999999999999999999542 3432221 111111
Q ss_pred ccCCceeEec-CCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHHHHhh
Q 047737 122 LYDGKDLGFA-EYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIAT 200 (265)
Q Consensus 122 ~~~~~~~~~~-~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~~vi~ 200 (265)
...+.+++.. .+|+.|+++|+++ +|+|+.++++.+.+.+.++++++++.|.+. .+++++|+.+.+..+++|+|+
T Consensus 80 ~~~~~~l~~~~~~g~~w~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~----~~~~~vd~~~~~~~~~~~vi~ 154 (470)
T 2ij2_A 80 DFAGDGLFTSWTHEKNWKKAHNIL-LPSFSQQAMKGYHAMMVDIAVQLVQKWERL----NADEHIEVPEDMTRLTLDTIG 154 (470)
T ss_dssp HHHTTSGGGSCTTSHHHHHHHHHH-GGGGSTTTHHHHHHHHHHHHHHHHHHHHTC----CTTCCEEHHHHHHHHHHHHHH
T ss_pred HhcCCceEEcCCCchHHHHHHHHh-ccccCHHHHHHHHHHHHHHHHHHHHHHHhh----CCCCeEEHHHHHHHHHHHHHH
Confidence 0114565555 4799999999999 999999999999999999999999999752 345689999999999999999
Q ss_pred HHhccccccchhhcCCcchhHHHHHHHHHHH
Q 047737 201 RCIFGRKVEDLEEENGSGESKFGELTKKNMI 231 (265)
Q Consensus 201 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (265)
.++||.+++.. .+++..++.+.+...+.
T Consensus 155 ~~~fG~~~~~~---~~~~~~~~~~~~~~~~~ 182 (470)
T 2ij2_A 155 LCGFNYRFNSF---YRDQPHPFITSMVRALD 182 (470)
T ss_dssp HHHHSCCCCGG---GCSSCCHHHHHHHHHHH
T ss_pred HHHcCCccccc---ccCCCCHHHHHHHHHHH
Confidence 99999998721 11233456555555443
No 17
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.91 E-value=6.7e-24 Score=180.98 Aligned_cols=192 Identities=17% Similarity=0.168 Sum_probs=140.7
Q ss_pred cCCCCCCCCCCCCCcccccccccc----CCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCC
Q 047737 38 STNKLNLPPSPPRLPIIGNLHQIV----QNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRP 113 (265)
Q Consensus 38 ~~~~~~~~pgp~~~p~~G~~~~~~----~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~ 113 (265)
..++.+.+|||+..++. +++.+. ..+++..+.+++++|||||++++|+.+.|+++||+++++|+.++. .|++++
T Consensus 4 ~~~pL~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~~-~f~~r~ 81 (487)
T 3n9y_A 4 SPRPFNEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSEG-PNPERF 81 (487)
T ss_dssp CCBCGGGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTCC-SSCCCC
T ss_pred CCCCHhhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhCC-CCCCCC
Confidence 34566778999887775 555542 236778899999999999999999999999999999999997654 676665
Q ss_pred Ccccc---cccccCCceeEecCCChhHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCccccHH
Q 047737 114 RSIAT---KILLYDGKDLGFAEYGEYWRQLWKICVLE-LLSNKRVKSAQHIRVEEVSCLINKIRRSCIN-GHGGSTINLS 188 (265)
Q Consensus 114 ~~~~~---~~~~~~~~~~~~~~~g~~w~~~R~~l~~~-~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~vd~~ 188 (265)
..... ......+.++ +..+|+.|+++|+++ +| .|+.++++.+.+.+.++++++++.|.+...+ ..++.++|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~l-~~~~g~~w~~~Rr~l-~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~ 159 (487)
T 3n9y_A 82 LIPPWVAYHQYYQRPIGV-LLKKSAAWKKDRVAL-NQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDIS 159 (487)
T ss_dssp CCHHHHHHHHHTTCCCCG-GGCCHHHHHHHHHHH-HHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEEECCH
T ss_pred CCcHHHHHHHHccccCCC-ccCCcHHHHHHHHhc-CcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCCccHH
Confidence 43211 1111224454 455699999999999 88 5999999999999999999999999763100 1234589999
Q ss_pred HHHHHHHHHHhhHHhccccccchhhcCCcchhHHHHHHHHHHHHh
Q 047737 189 EMILAVSNNIATRCIFGRKVEDLEEENGSGESKFGELTKKNMILL 233 (265)
Q Consensus 189 ~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (265)
+.+..+++|+|+.++||.+++......+....++.+.+..++...
T Consensus 160 ~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (487)
T 3n9y_A 160 DDLFRFAFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTS 204 (487)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCTTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccCCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999997311111112234555555554443
No 18
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.90 E-value=1.5e-23 Score=176.81 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=127.8
Q ss_pred CCCCCCCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcccc
Q 047737 39 TNKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIAT 118 (265)
Q Consensus 39 ~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~ 118 (265)
.++.+.||||+++|++|+++.+ ..+++ .+.+++++||+||+++++|.+.++++||+.+++|+.++...|+.+... ..
T Consensus 8 ~~~~~~pPgp~~~P~iG~~~~~-~~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~-~~ 84 (444)
T 2ve3_A 8 LNSLPIPPGDFGLPWLGETLNF-LNDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPL-ST 84 (444)
T ss_dssp -CCCCCCCCCCCBTTTBTHHHH-HHCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECCH-HH
T ss_pred CCCCCCCCCCCCCCccccHHHH-hcCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchhH-HH
Confidence 3556788999999999999887 45566 788999999999999988888999999999999998765556532211 11
Q ss_pred cccccCCc-eeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHHH
Q 047737 119 KILLYDGK-DLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNN 197 (265)
Q Consensus 119 ~~~~~~~~-~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~~ 197 (265)
.... |. +++ ..+|+.|+++|+++ +++|++++++.+.+.+.++++++++.|.+ ++++|+.+.+..+++|
T Consensus 85 ~~~~--g~~~l~-~~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~-------~~~vd~~~~~~~~~~~ 153 (444)
T 2ve3_A 85 RILL--GPNALA-TQMGEIHRSRRKIL-YQAFLPRTLDSYLPKMDGIVQGYLEQWGK-------ANEVIWYPQLRRMTFD 153 (444)
T ss_dssp HHHH--CTTSGG-GCCHHHHHHHHHHH-HGGGCHHHHHTTHHHHHHHHHHHHHHHHH-------SSEEEHHHHHHHHHHH
T ss_pred HHHh--Cccccc-cCCchHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhcC-------CCcEeHHHHHHHHHHH
Confidence 1121 33 544 45699999999999 99999999999999999999999999963 4689999999999999
Q ss_pred HhhHHhcccccc
Q 047737 198 IATRCIFGRKVE 209 (265)
Q Consensus 198 vi~~~~fG~~~~ 209 (265)
+++.++|| +..
T Consensus 154 vi~~~~fG-~~~ 164 (444)
T 2ve3_A 154 VAATLFMG-EKV 164 (444)
T ss_dssp HHHHHHTC-HHH
T ss_pred HHHHHHcC-CCc
Confidence 99999999 443
No 19
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.90 E-value=5.8e-24 Score=180.21 Aligned_cols=160 Identities=14% Similarity=0.221 Sum_probs=133.5
Q ss_pred CCCCCCCCC-CCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcc-
Q 047737 39 TNKLNLPPS-PPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSI- 116 (265)
Q Consensus 39 ~~~~~~~pg-p~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~- 116 (265)
.++.+.||| |+++|++||++.+ ..+++.++.+++++||+||+++++|.+.+++++|+.+++++.++...+..+....
T Consensus 7 ~~~~~~PPg~P~~lP~iG~l~~~-~~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~ 85 (461)
T 3i3k_A 7 PAGVKSPPYIFSPIPFLGHAIAF-GKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSR 85 (461)
T ss_dssp ---CCCCCBCCCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHH
T ss_pred CCCCCCCCCCCCCCCccccHHhh-ccCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHHH
Confidence 355678999 8899999999998 6788999999999999999999999999999999999999987766554432211
Q ss_pred cccccccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHH
Q 047737 117 ATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSN 196 (265)
Q Consensus 117 ~~~~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~ 196 (265)
...... |.|+++..+|+.|+++|+++ .+.|+.+.++.+.+.+.++++++++.|.+ ++.+|+.+.+..+++
T Consensus 86 ~~~~~~--g~g~~~~~~g~~w~~~Rr~~-~~~f~~~~l~~~~~~~~~~~~~ll~~l~~-------~~~~dl~~~~~~~~~ 155 (461)
T 3i3k_A 86 LTTPVF--GKGVAYDVPNPVFLEQKKML-KSGLNIAHFKQHVSIIEKETKEYFESWGE-------SGEKNVFEALSELII 155 (461)
T ss_dssp HHHHHH--CTTSGGGSCHHHHHHHHHHH-HHHSSHHHHHHHHHHHHHHHHHHGGGGCS-------EEEEEHHHHHHHHHH
T ss_pred hhhhhc--CCeeeeCCCcHHHHHHHHHH-hhhhCHHHHHHHHHHHHHHHHHHHHHhhh-------cCCcCHHHHHHHHHH
Confidence 111222 56766666799999999999 99999999999999999999999988853 246899999999999
Q ss_pred HHhhHHhcccccc
Q 047737 197 NIATRCIFGRKVE 209 (265)
Q Consensus 197 ~vi~~~~fG~~~~ 209 (265)
++++.++||.++.
T Consensus 156 ~~~~~~~~G~~~~ 168 (461)
T 3i3k_A 156 LTASHCLHGKEIR 168 (461)
T ss_dssp HHHHHHHTCHHHH
T ss_pred HHHHHHHccHhhh
Confidence 9999999998876
No 20
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.89 E-value=5.2e-23 Score=174.11 Aligned_cols=168 Identities=13% Similarity=0.189 Sum_probs=119.8
Q ss_pred CCCCC-CCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCccccccc
Q 047737 43 NLPPS-PPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATKIL 121 (265)
Q Consensus 43 ~~~pg-p~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~ 121 (265)
+.||| |+++|++|+++.+ ..+++..+.+++++||+||++++++.+.++++||+++++|+.++...|++++........
T Consensus 4 ~~PPg~p~~~P~iG~~~~~-~~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 82 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEF-RTDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPI 82 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHH-TTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHH
T ss_pred CCCCCCCCCCCCccCHHHH-hhChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhh
Confidence 56788 7789999999988 778899999999999999999999999999999999999998766667665543222222
Q ss_pred ccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHHHHhhH
Q 047737 122 LYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATR 201 (265)
Q Consensus 122 ~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~~vi~~ 201 (265)
. |.++ .. +|+.|+++|+++ +++|++++++.+.+.+.++++++++.|.+ ++++|+.+.+..+++|+++.
T Consensus 83 ~--g~~~-~~-~~~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~~~~-------~~~vd~~~~~~~~~~~vi~~ 150 (455)
T 2cib_A 83 F--GEGV-VF-DASPERRKEMLH-NAALRGEQMKGHAATIEDQVRRMIADWGE-------AGEIDLLDFFAELTIYTSSA 150 (455)
T ss_dssp H--C-----------------------CCHHHHHHHHHHHHHHHHHHHTTCCS-------EEEEEHHHHHHHHHHHHHHH
T ss_pred c--CCcc-cc-CcHHHHHHHhhh-ccccCHHHHHHHHHHHHHHHHHHHHHhCC-------CCcEeHHHHHHHHHHHHHHH
Confidence 2 3444 33 599999999999 99999999999999999999999987642 35799999999999999999
Q ss_pred HhccccccchhhcCCcchhHHHHHHHHH
Q 047737 202 CIFGRKVEDLEEENGSGESKFGELTKKN 229 (265)
Q Consensus 202 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~ 229 (265)
++||.+++ . ..+.++.+.+..+
T Consensus 151 ~~fG~~~~----~--~~~~~~~~~~~~~ 172 (455)
T 2cib_A 151 CLIGKKFR----D--QLDGRFAKLYHEL 172 (455)
T ss_dssp HHTCHHHH----T--TCCHHHHHHHHHH
T ss_pred HHcCCCcc----h--hhhHHHHHHHHHH
Confidence 99999986 1 1224555555544
No 21
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.88 E-value=1.9e-23 Score=177.32 Aligned_cols=169 Identities=16% Similarity=0.252 Sum_probs=122.2
Q ss_pred CCCCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccc-cCCCCcccccc
Q 047737 42 LNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAF-SNRPRSIATKI 120 (265)
Q Consensus 42 ~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~-~~~~~~~~~~~ 120 (265)
...||||+++|++|+++.+ ..+++.++.++++ ||||+++++++.+.++++||+.+++|+.++ .| .+.........
T Consensus 22 ~eppPgP~~~P~iG~~~~~-~~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~ 97 (467)
T 3dbg_A 22 REPPVAGGGVPLLGHGWRL-ARDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEG 97 (467)
T ss_dssp CBCCEECCCCSTTHHHHHH-HHCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC------------
T ss_pred CCCCCCCCCCCcccchHHh-ccCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHH
Confidence 4568899999999999988 6788999999988 999999999999999999999999999876 45 33322222222
Q ss_pred cccCC-ceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHHHHh
Q 047737 121 LLYDG-KDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIA 199 (265)
Q Consensus 121 ~~~~~-~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~~vi 199 (265)
.. | .++ +..+|+.|+++|+++ +++|+.++++.+.+.+.++++++++.|.+ ++++|+.+.+..++++++
T Consensus 98 ~~--g~~~l-~~~dg~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~~~~d~~~~~~~~~~~vi 166 (467)
T 3dbg_A 98 LL--GKEGV-ATANGPLHRRQRRTI-QPAFRLDAIPAYGPIMEEEAHALTERWQP-------GKTVDATSESFRVAVRVA 166 (467)
T ss_dssp ---------------------CGGG-HHHHSTTTSTTTHHHHHHHHHHHHHHSCT-------TSCEEHHHHHHHHHHHHH
T ss_pred hc--CCCCc-ccCCcHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhcc-------CCcCcHHHHHHHHHHHHH
Confidence 22 4 454 445699999999999 99999999999999999999999998842 568999999999999999
Q ss_pred hHHhccccccchhhcCCcchhHHHHHHHHHHH
Q 047737 200 TRCIFGRKVEDLEEENGSGESKFGELTKKNMI 231 (265)
Q Consensus 200 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (265)
+.++||.+++. +...++...+..+..
T Consensus 167 ~~~~~g~~~~~------~~~~~~~~~~~~~~~ 192 (467)
T 3dbg_A 167 ARCLLRGQYMD------ERAERLCVALATVFR 192 (467)
T ss_dssp HHHHSCSSCCH------HHHHHHHHHHHHHHH
T ss_pred HHHHhCCcccc------hhHHHHHHHHHHHHH
Confidence 99999999871 223455555555544
No 22
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.88 E-value=3.6e-23 Score=176.71 Aligned_cols=167 Identities=13% Similarity=0.124 Sum_probs=132.3
Q ss_pred cCCCCCCCCCCCC-CccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhcc-ccccCCCCc
Q 047737 38 STNKLNLPPSPPR-LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHD-IAFSNRPRS 115 (265)
Q Consensus 38 ~~~~~~~~pgp~~-~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~-~~~~~~~~~ 115 (265)
.+++.+.||||++ +|++|+++.+ ..+++.++.+++++|||||++++++.++++++||+++++++.++. ..+..+...
T Consensus 8 ~~~~~~~PPgp~~~lPliG~~~~~-~~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~~~ 86 (491)
T 3v8d_A 8 RRRQTGEPPLENGLIPYLGCALQF-GANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFA 86 (491)
T ss_dssp CCCCTTSCCEEEEEESSTTTTGGG-TCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHHHH
T ss_pred hccCCCCCCCCCCCcceeccHHHH-hcCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHHHH
Confidence 3456678999998 7999999999 889999999999999999999999999999999999999996544 123222211
Q ss_pred ccccccccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHH
Q 047737 116 IATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVS 195 (265)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t 195 (265)
...... |.+.+...+|+.|+++|+.+ .++|++++++.+.+.+.+++.++++.+.............++.+.+..++
T Consensus 87 ~~~~~~---g~~~~~~~~g~~~~~~Rr~~-~~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~ 162 (491)
T 3v8d_A 87 LSAKAF---GHRSIDPMDGNTTENINDTF-IKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVM 162 (491)
T ss_dssp HHHHHH---TCCCCCGGGSSBCCCHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHSCCSSCGGGGCSCEEEEHHHHHHHHH
T ss_pred HHHHhc---CCcccccccchhHHHHHHHH-HHHcCccchHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCHHHHHHHHH
Confidence 111222 44445555699999999998 99999999999999999999999885532100001245789999999999
Q ss_pred HHHhhHHhcccccc
Q 047737 196 NNIATRCIFGRKVE 209 (265)
Q Consensus 196 ~~vi~~~~fG~~~~ 209 (265)
+++++.++||.+..
T Consensus 163 ~~~~~~~~fG~~~~ 176 (491)
T 3v8d_A 163 FEAGYLTIFGRDLT 176 (491)
T ss_dssp HHHHHHHHHCBCCS
T ss_pred HHHHHHHHcCcccc
Confidence 99999999999876
No 23
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.86 E-value=6.5e-21 Score=161.24 Aligned_cols=161 Identities=15% Similarity=0.226 Sum_probs=125.9
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcc-cc-ccc--ccCCceeEecCCChhH
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSI-AT-KIL--LYDGKDLGFAEYGEYW 137 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~-~~-~~~--~~~~~~~~~~~~g~~w 137 (265)
+..++..+.+|+++|||||++++|+.+.|+++||+++++|+.++ .+.+++... .. ... ...|.|+++..+|+.|
T Consensus 9 g~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w 86 (456)
T 3mdm_A 9 GRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMST--KYNKDSKMYRALQTVFGERLFGQGLVSECNYERW 86 (456)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTCT--TSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHH
T ss_pred cchHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhhc--cccccchhHHHHHHhhcccccCCCcccCCChHHH
Confidence 45678889999999999999999999999999999999999642 343332211 00 001 0125666666679999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHHHHhhHHhccccccchhhcCCc
Q 047737 138 RQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVEDLEEENGS 217 (265)
Q Consensus 138 ~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~ 217 (265)
+++|+++ +|+|+.++++.+.+.+.++++++++.+.+. .+++.++|+.+.+..+++|+++.++||.+++ ....
T Consensus 87 ~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~----~~~~ 158 (456)
T 3mdm_A 87 HKQRRVI-DLAFSRSSLVSLMETFNEKAEQLVEILEAK---ADGQTPVSMQDMLTYTAMDILAKAAFGMETS----MLLG 158 (456)
T ss_dssp HHHHHHH-GGGGSHHHHHTTHHHHHHHHHHHHHHHHHT---CSSSSCEEHHHHHHHHHHHHHHHHHHSCCCC----GGGT
T ss_pred HHHHhhc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCeeeHHHHHHHHHHHHHHHHHcCCChh----hhcc
Confidence 9999999 999999999999999999999999999875 5566799999999999999999999999997 3223
Q ss_pred chhHHHHHHHHHHHH
Q 047737 218 GESKFGELTKKNMIL 232 (265)
Q Consensus 218 ~~~~~~~~~~~~~~~ 232 (265)
...++.+.+..+...
T Consensus 159 ~~~~~~~~~~~~~~~ 173 (456)
T 3mdm_A 159 AQKPLSQAVKLMLEG 173 (456)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 334555555554443
No 24
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.86 E-value=2.4e-21 Score=162.88 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=118.4
Q ss_pred CCCCCCCCCCCccccccc-cccCCCchhHHHHHHhhcCCeEEEEe-CCccEEEeccHHHHHHHHHhccccccCCCCcccc
Q 047737 41 KLNLPPSPPRLPIIGNLH-QIVQNVPHRSLKALSDRYGPIILVYF-GNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIAT 118 (265)
Q Consensus 41 ~~~~~pgp~~~p~~G~~~-~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~ 118 (265)
..+.||||+++|++|++. .+ ..+++..+.++ ++||||+++++ ++.+.++++||+++++|+.++ .|++++.....
T Consensus 24 ~~~~~PGP~~~p~lG~~~~~~-~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~ 99 (436)
T 2cd8_A 24 TQQGTTASPPVLDLGALGQDF-AADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNSTT 99 (436)
T ss_dssp ----------CCBHHHHHHHH-HHCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGCSS
T ss_pred hccCCCCCCccccCCCCCccc-ccChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCccccccccc
Confidence 345679999999999986 44 67889999999 89999999998 778899999999999999875 56655431111
Q ss_pred ccc---ccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHH
Q 047737 119 KIL---LYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAV 194 (265)
Q Consensus 119 ~~~---~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~ 194 (265)
... ...+.++ +..+|+.|+++|+++ +++|++++++.+.+.+.++++++++.|.+ ..++++|+.+.+ ..+
T Consensus 100 ~~~~~~~~~~~~l-~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~-----~~~~~vd~~~~~~~~~ 172 (436)
T 2cd8_A 100 PLTEAEAALNHNM-LESDPPRHTRLRKLV-AREFTMRRVELLRPRVQEIVDGLVDAMLA-----APDGRADLMESLAWPL 172 (436)
T ss_dssp CCCTTGGGTCCSG-GGCCTTHHHHHHHHH-GGGSSHHHHHTTHHHHHHHHHHHHHHHHT-----CTTSCEEHHHHTTTHH
T ss_pred ccccccccccccc-cccCchHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHh-----ccCCCcchHHHHHHHH
Confidence 110 1114454 446699999999999 99999999999999999999999999973 125689999977 579
Q ss_pred HHHHhhHHhcccccc
Q 047737 195 SNNIATRCIFGRKVE 209 (265)
Q Consensus 195 t~~vi~~~~fG~~~~ 209 (265)
++|+|+. +||.+.+
T Consensus 173 ~~~vi~~-~~G~~~~ 186 (436)
T 2cd8_A 173 PITVISE-LLGVPEP 186 (436)
T ss_dssp HHHHHHH-HHTCCGG
T ss_pred HHHHHHH-HhCCCHH
Confidence 9999998 7998764
No 25
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.84 E-value=1.5e-21 Score=161.96 Aligned_cols=147 Identities=20% Similarity=0.258 Sum_probs=123.9
Q ss_pred CCCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCC-CcccccccccCC
Q 047737 47 SPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRP-RSIATKILLYDG 125 (265)
Q Consensus 47 gp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~-~~~~~~~~~~~~ 125 (265)
+++..|++||++.+ ..+++.++.+++++||||++ ++++.+.++++||+++++++.++ .|++++ ......... |
T Consensus 3 ~~~~~p~iGnl~~~-~~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~~--g 76 (389)
T 1n97_A 3 RLSLREAWPYLKDL-QQDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRLT--G 76 (389)
T ss_dssp ECCHHHHHHHHHHH-HHCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHHH--C
T ss_pred ccccccccccHHHH-hhChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHHh--C
Confidence 45568999999888 67889999999999999999 89988999999999999999876 676664 221222222 4
Q ss_pred ceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHHHHhhHHhcc
Q 047737 126 KDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFG 205 (265)
Q Consensus 126 ~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG 205 (265)
.+++ ..+|+.|+++|+.+ +|+|++++++.+.+.+.++++++++.|. ++++|+.+.+..+++|+++.++||
T Consensus 77 ~~l~-~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~--------~~~~dl~~~~~~~~~~vi~~~~fG 146 (389)
T 1n97_A 77 RGLL-TDWGESWKEARKAL-KDPFLPKNVRGYREAMEEEARAFFGEWR--------GEERDLDHEMLALSLRLLGRALFG 146 (389)
T ss_dssp SSTT-TCCHHHHHHHHHHH-CGGGSHHHHHTTHHHHHHHHHHHHHTCC--------SCCEEHHHHHHHHHHHHHHHHHHS
T ss_pred Cccc-cCCcHHHHHHHHHh-CcccCHHHHHHHHHHHHHHHHHHHHHcc--------CCcCcHHHHHHHHHHHHHHHHHcC
Confidence 5554 44699999999999 9999999999999999999999988763 468999999999999999999999
Q ss_pred cccc
Q 047737 206 RKVE 209 (265)
Q Consensus 206 ~~~~ 209 (265)
.+++
T Consensus 147 ~~~~ 150 (389)
T 1n97_A 147 KPLS 150 (389)
T ss_dssp SCCC
T ss_pred Ccch
Confidence 9885
No 26
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.82 E-value=1.6e-20 Score=160.25 Aligned_cols=166 Identities=13% Similarity=0.108 Sum_probs=123.3
Q ss_pred CCCCCCCCCCCC-CccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhcc-ccccCCCCcc
Q 047737 39 TNKLNLPPSPPR-LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHD-IAFSNRPRSI 116 (265)
Q Consensus 39 ~~~~~~~pgp~~-~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~-~~~~~~~~~~ 116 (265)
++..+.||||++ +|++|+++.+ ..+++..+.+++++||+||++++|+.++++++||+++++++.++. ..+.+....
T Consensus 9 ~~~~~~pPgp~~~~P~iG~~~~~-~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~~~~~~~~~~- 86 (491)
T 3dax_A 9 RRQTGEPPLENGLIPYLGCALQF-GANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFA- 86 (491)
T ss_dssp CCCTTCCCEEEEEESCTTTTGGG-TCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTTEESSHHHHH-
T ss_pred ccCCCCCCcCCCcccchhhHHHH-hhCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCccCChHHHHHH-
Confidence 344567899887 8999999988 678889999999999999999999999999999999999997654 223221111
Q ss_pred cccccccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHH
Q 047737 117 ATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSN 196 (265)
Q Consensus 117 ~~~~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~ 196 (265)
...... |.+.+...+|+.|+++|+.+ .+.|+.++++.+.+.+.+++.+.++..............+|+.+.+..+++
T Consensus 87 ~~~~~~--g~~~~~~~~g~~w~~~r~~~-~~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~ 163 (491)
T 3dax_A 87 TSAKAF--GHRSIDPMDGNTTENINDTF-IKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMF 163 (491)
T ss_dssp HHHHHH--TCCCCCGGGTSBCCCHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHC----------CCEEEEHHHHHHHHHH
T ss_pred HHHHHc--CCCcccccchhHHHHHHHHH-HHhcCcccHHHHHHHHHHHHHHHHHhhccCCcCCCCceeccHHHHHHHHHH
Confidence 111111 44544244588999999998 899999999999888888888877665321000012246889999999999
Q ss_pred HHhhHHhcccccc
Q 047737 197 NIATRCIFGRKVE 209 (265)
Q Consensus 197 ~vi~~~~fG~~~~ 209 (265)
++++.++||.+.+
T Consensus 164 ~~~~~~~fG~~~~ 176 (491)
T 3dax_A 164 EAGYLTIFGRDLT 176 (491)
T ss_dssp HHHHHHHHCBCST
T ss_pred HHhHHHHcCcccc
Confidence 9999999998875
No 27
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.82 E-value=1.6e-19 Score=151.08 Aligned_cols=145 Identities=14% Similarity=0.112 Sum_probs=117.8
Q ss_pred CccccccccccCCCchhHHHHHHhhcC-CeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcc--cccccccCCce
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYG-PIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSI--ATKILLYDGKD 127 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~--~~~~~~~~~~~ 127 (265)
.|++|++..+ ..+++.++.+++++|| ||+++.++|.+.+++++|+.++.++ + ...|.+..... ...... |.+
T Consensus 8 ~P~lG~~~~~-~~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~--g~~ 82 (417)
T 1izo_A 8 DKSLDNSLTL-LKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY-D-TDRFQRQNALPKRVQKSLF--GVN 82 (417)
T ss_dssp CCCTTHHHHH-HHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHT-C-TTTEECTTCSCHHHHTTTT--CTT
T ss_pred CCccchHHHH-hhCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHh-c-ccccccccccccchhhhhc--ccc
Confidence 4899999988 6789999999999998 9999999989999999999998554 3 23454432211 111122 333
Q ss_pred eEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHHHHhhHHhcccc
Q 047737 128 LGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRK 207 (265)
Q Consensus 128 ~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~ 207 (265)
.++..+|+.|+++|+++ +|+|++++++.+.+.+.+.++++++.|.+ ++++|+.+.+..+++|+++++ +|.+
T Consensus 83 ~l~~~dg~~h~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~-------~~~~dl~~~~~~~~~~vi~~~-~G~~ 153 (417)
T 1izo_A 83 AIQGMDGSAHIHRKMLF-LSLMTPPHQKRLAELMTEEWKAAVTRWEK-------ADEVVLFEEAKEILCRVACYW-AGVP 153 (417)
T ss_dssp CGGGCCHHHHHHHHHHH-HHTSSHHHHHHHHHHHHHHHHHHHHHHTT-------SSEEEHHHHHHHHHHHHHHHH-HTCC
T ss_pred ceeecCChHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHhc-------CCCeeHHHHHHHHHHHHHHHH-cCCC
Confidence 34566799999999999 99999999999999999999999999853 468999999999999999998 5988
Q ss_pred cc
Q 047737 208 VE 209 (265)
Q Consensus 208 ~~ 209 (265)
.+
T Consensus 154 ~~ 155 (417)
T 1izo_A 154 LK 155 (417)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 28
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.81 E-value=3.4e-19 Score=148.95 Aligned_cols=148 Identities=15% Similarity=0.110 Sum_probs=117.4
Q ss_pred CCCCCCCccccccccccCCCchhHHHHHHhhc-CCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcc--ccccc
Q 047737 45 PPSPPRLPIIGNLHQIVQNVPHRSLKALSDRY-GPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSI--ATKIL 121 (265)
Q Consensus 45 ~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~y-G~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~--~~~~~ 121 (265)
|||| |++|++..+ ..+++.++.+++++| |||+++..++.+.+++++|+.++ ++.+. ..|++..... .....
T Consensus 4 pPg~---P~iG~~~~~-~~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~~~~~~ 77 (415)
T 3awm_A 4 TPHT---KGPDETLSL-LADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREGAMPVAIQKTL 77 (415)
T ss_dssp --------CCCCHHHH-HHSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTTCSCHHHHTTT
T ss_pred CCCC---CccchHHHH-HhChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccccccchhhhhhc
Confidence 5665 899999988 678999999999999 79999999888999999999986 66543 3565443211 11112
Q ss_pred ccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHHHHhhH
Q 047737 122 LYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATR 201 (265)
Q Consensus 122 ~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~~vi~~ 201 (265)
. |.+.+...+|+.|+++|+++ +++|+++.++.+.+.+.+.++++++.|.+. +++|+.+.+..+++++++.
T Consensus 78 ~--g~~~l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~~~~~-------~~vdl~~~~~~~~~~vi~~ 147 (415)
T 3awm_A 78 L--GQGGVQGLDGETHRHRKQMF-MGLMTPERVRALAQLFEAEWRRAVPGWTRK-------GEIVFYDELHEPLTRAVCA 147 (415)
T ss_dssp S--CSSSGGGCCHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-------SEEEHHHHHHHHHHHHHHH
T ss_pred c--CCcceeecCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHhhccC-------CcEeHHHHHHHHHHHHHHH
Confidence 1 32334556799999999999 999999999999999999999999999753 5899999999999999999
Q ss_pred Hhcccccc
Q 047737 202 CIFGRKVE 209 (265)
Q Consensus 202 ~~fG~~~~ 209 (265)
+ ||.+.+
T Consensus 148 ~-~G~~~~ 154 (415)
T 3awm_A 148 W-AGVPLP 154 (415)
T ss_dssp H-HTCCCC
T ss_pred H-cCCCCC
Confidence 8 898876
No 29
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.81 E-value=6.7e-20 Score=156.59 Aligned_cols=165 Identities=11% Similarity=0.059 Sum_probs=125.3
Q ss_pred CCCCCCCCCCCCCcccccccccc----CCCchhHHHHHHhhcCC-eEEEEeCCccE-------EEeccHHHHHHHHHhcc
Q 047737 39 TNKLNLPPSPPRLPIIGNLHQIV----QNVPHRSLKALSDRYGP-IILVYFGNSPS-------LVVSSAEVASEMMKTHD 106 (265)
Q Consensus 39 ~~~~~~~pgp~~~p~~G~~~~~~----~~~~~~~~~~~~~~yG~-i~~~~~~~~~~-------v~v~~p~~i~~il~~~~ 106 (265)
..+.+.||||.++|++|+++++. ..+++.++.+++++||+ ||++++++.++ +++.+++..+.++....
T Consensus 24 ~~p~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~~ 103 (495)
T 3dsk_A 24 DLPIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDK 103 (495)
T ss_dssp CCCBCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTTT
T ss_pred CCCCCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeeccccc
Confidence 35667899999999999998774 57899999999999999 99999988887 66677776665553211
Q ss_pred ----ccccCCCCcccccccccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 047737 107 ----IAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGG 182 (265)
Q Consensus 107 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (265)
..+...... .....+..+...+...+|+.|+++|+++ .+.|+... +.+.+.+.++++++++.|.+. ..++
T Consensus 104 v~k~~~~~~~~~~-~~~l~g~~~~~~~~~~~g~~h~~~R~~~-~~~f~~~~-~~~~~~i~~~~~~ll~~~~~~---~~~~ 177 (495)
T 3dsk_A 104 VEKKDLLTGTYMP-STELTGGYRILSYLDPSEPKHEKLKNLL-FFLLKSSR-NRIFPEFQATYSELFDSLEKE---LSLK 177 (495)
T ss_dssp EECSSCTTSSSCC-CGGGGTTCCCGGGCCTTSHHHHHHHHHH-HHHHHHTT-TTHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred ccccccccccCCC-CccccCCCcceeeeCCCchHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---hccC
Confidence 112111111 1122221122334445799999999999 99999865 889999999999999999763 2335
Q ss_pred ccccHHHHHHHHHHHHhhHHhcccccc
Q 047737 183 STINLSEMILAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 183 ~~vd~~~~~~~~t~~vi~~~~fG~~~~ 209 (265)
+++|+.+++..++++++++++||.+.+
T Consensus 178 ~~vdl~~~~~~~~~~~i~~~~~G~~~~ 204 (495)
T 3dsk_A 178 GKADFGGSSDGTAFNFLARAFYGTNPA 204 (495)
T ss_dssp SSEESHHHHHHHHHHHHHHHHHSCCGG
T ss_pred CCccHHHHHHHHHHHHHHHHHcCCCcc
Confidence 689999999999999999999999887
No 30
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.81 E-value=2.5e-19 Score=149.28 Aligned_cols=157 Identities=11% Similarity=0.089 Sum_probs=119.5
Q ss_pred CCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeC-CccEEEeccHHHHHHHHHhcc-ccccCCCCcccccc-
Q 047737 44 LPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG-NSPSLVVSSAEVASEMMKTHD-IAFSNRPRSIATKI- 120 (265)
Q Consensus 44 ~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~v~~p~~i~~il~~~~-~~~~~~~~~~~~~~- 120 (265)
.||||+++|++|++. .+++..+.+++ +||||+++.++ |.+.+++++++.+++++.++. ..+..++.......
T Consensus 2 ~pPGp~~~P~~g~~~----~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~ 76 (404)
T 1jfb_A 2 MASGAPSFPFSRASG----PEPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSAS 76 (404)
T ss_dssp ----CCBSSCCCSST----TSCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHH
T ss_pred CCCCCCCCCCCCCcC----CCccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCcccccc
Confidence 489999999999975 37888998886 59999999874 667778999999999998753 22333322211110
Q ss_pred --cccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHHHH
Q 047737 121 --LLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNI 198 (265)
Q Consensus 121 --~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~~v 198 (265)
....+.+.++..+|+.|+++|+++ +++|+.++++.+.+.+.++++++++.|.+. ..+++++|+.+.+...+.++
T Consensus 77 ~~~~~~~~~~l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---~~~~~~~d~~~~~~~~~~~~ 152 (404)
T 1jfb_A 77 GKQAAKAKPTFVDMDPPEHMHQRSMV-EPTFTPEAVKNLQPYIQRTVDDLLEQMKQK---GCANGPVDLVKEFALPVPSY 152 (404)
T ss_dssp HHHHTTSCCCGGGCCTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHH---CSTTSCEEHHHHTTTHHHHH
T ss_pred ccchhcccCcccccCchhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCccHHHHHHHHHHHH
Confidence 001122234455699999999999 999999999999999999999999999875 44456899999999999999
Q ss_pred hhHHhcccccc
Q 047737 199 ATRCIFGRKVE 209 (265)
Q Consensus 199 i~~~~fG~~~~ 209 (265)
++..+||.+.+
T Consensus 153 i~~~~~G~~~~ 163 (404)
T 1jfb_A 153 IIYTLLGVPFN 163 (404)
T ss_dssp HHHHHHTCCGG
T ss_pred HHHHHcCCCHH
Confidence 99999998775
No 31
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.79 E-value=9.7e-19 Score=145.77 Aligned_cols=151 Identities=13% Similarity=0.144 Sum_probs=118.2
Q ss_pred CCCCCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEE----e-CC-ccEEEeccHHHHHHHH-HhccccccCCC
Q 047737 41 KLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVY----F-GN-SPSLVVSSAEVASEMM-KTHDIAFSNRP 113 (265)
Q Consensus 41 ~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~----~-~~-~~~v~v~~p~~i~~il-~~~~~~~~~~~ 113 (265)
..+.||||+++|+. + ..+++..+.++ ++||||++++ + ++ .+.++++||+++++|+ .++ .|++++
T Consensus 8 ~~~lppgp~~~p~~-----~-~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~~~ 78 (406)
T 1ued_A 8 VAPLLREPANFQLR-----T-NCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTTRP 78 (406)
T ss_dssp CCCEEECCTTTTCE-----E-TTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEECCC
T ss_pred CCCCcccCcccCCC-----C-CCCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--cccccc
Confidence 35578999989886 4 67899999999 9999999999 6 78 8999999999999999 443 244443
Q ss_pred Cccccc-ccc---cCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHH
Q 047737 114 RSIATK-ILL---YDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSE 189 (265)
Q Consensus 114 ~~~~~~-~~~---~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~ 189 (265)
...... ... ..+.++ +..+|+.|+++|+++ +++|+.++++.+.+.+.++++++++.|.+. |+++|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~l-~~~~g~~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~------g~~~d~~~ 150 (406)
T 1ued_A 79 QFTQSKSGAHVEAQFVGQI-STYDPPEHTRLRKML-TPEFTVRRIRRMEPAIQSLIDDRLDLLEAE------GPSADLQG 150 (406)
T ss_dssp CC---------CGGGTTCG-GGCCTTHHHHHHHHH-GGGSSHHHHHHHHHHHHHHHHHHHHHHHHH------CTTEEHHH
T ss_pred ccccccccccccccccccc-ccCCCHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHhc------CCCeeHHH
Confidence 211110 010 013344 455799999999999 999999999999999999999999999753 56899999
Q ss_pred HHHH-HHHHHhhHHhcccccc
Q 047737 190 MILA-VSNNIATRCIFGRKVE 209 (265)
Q Consensus 190 ~~~~-~t~~vi~~~~fG~~~~ 209 (265)
.+.. +++|+++ .+||.+.+
T Consensus 151 ~~~~~~~~~vi~-~~~G~~~~ 170 (406)
T 1ued_A 151 LFADPVGAHALC-ELLGIPRD 170 (406)
T ss_dssp HTHHHHHHHHHH-HHHTCCHH
T ss_pred HHHHHhHHHHHH-HHcCCCHH
Confidence 8875 9999999 57998754
No 32
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.78 E-value=3.7e-19 Score=152.09 Aligned_cols=161 Identities=10% Similarity=0.089 Sum_probs=120.7
Q ss_pred CCCCCCCCCCCC-CccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCc-c
Q 047737 39 TNKLNLPPSPPR-LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRS-I 116 (265)
Q Consensus 39 ~~~~~~~pgp~~-~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~-~ 116 (265)
++..+.||||++ +|++|+++.+ ..+++.++.+++++||+||++++|+.++++++||+++++++.++...++.+... .
T Consensus 14 ~~~~~~PPgp~~~~P~iG~~~~~-~~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~ 92 (498)
T 3b6h_A 14 TRRPGEPPLDLGSIPWLGYALDF-GKDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAIF 92 (498)
T ss_dssp CCCTTCCCEECCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHHHH
T ss_pred ccCCCCCCCCCCCCcchhhHHHh-ccCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhHHH
Confidence 355677899988 8999999988 667899999999999999999999999999999999999997655323222211 1
Q ss_pred cccccccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHH
Q 047737 117 ATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSN 196 (265)
Q Consensus 117 ~~~~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~ 196 (265)
...... |.+.+ ..+|+.| |+.+ .+.|+.+.++.+.+.+.+++.+.++...... ......+++.+.+..+++
T Consensus 93 ~~~~~~--g~~~~-~~~~~~~---rr~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~l~~~~~~vi~ 163 (498)
T 3b6h_A 93 LMERIF--DVQLP-HYSPSDE---KARM-KLTLLHRELQALTEAMYTNLHAVLLGDATEA--GSGWHEMGLLDFSYSFLL 163 (498)
T ss_dssp HHHHTS--CCCCT-TCCHHHH---HHHH-HTTSSHHHHHHHHHHHHHHHHHHHHHHHHHH--CSSCEEEEHHHHHHHHHH
T ss_pred HHHHHc--CCCcc-ccCHHHH---HHHH-HHhhchHhHHHHHHHHHHHHHHHHhhccccc--CCCcceecHHHHHHHHHH
Confidence 111111 44444 3446666 5566 7899999999998888888877777654310 122346889999999999
Q ss_pred HHhhHHhcccccc
Q 047737 197 NIATRCIFGRKVE 209 (265)
Q Consensus 197 ~vi~~~~fG~~~~ 209 (265)
++++.++||.+++
T Consensus 164 ~~~~~~~fG~~~~ 176 (498)
T 3b6h_A 164 RAGYLTLYGIEAL 176 (498)
T ss_dssp HHHHHHHHCBSCS
T ss_pred HHHHHhhcCcccc
Confidence 9999999999875
No 33
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.77 E-value=7.4e-18 Score=140.71 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=116.4
Q ss_pred CCCCCCCCCccccccccccCCCchhHHHHHHhhc-CCeEEEEe-CCccEEEeccHHHHHHHHHhccccccCCCCcccccc
Q 047737 43 NLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRY-GPIILVYF-GNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATKI 120 (265)
Q Consensus 43 ~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~y-G~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~ 120 (265)
..||+|+++|.+..-..+ ..+++..+.++ ++| |||+++++ ++.+.++++||+++++|+.++. +++++.......
T Consensus 5 ~~~~~~~~~P~~~~~~~~-~~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~ 80 (412)
T 2zbx_A 5 ATTPQTTDAPAFPSNRSC-PYQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDPR--LSSNRTDDNFPA 80 (412)
T ss_dssp ---CCCCSSCBSSCCCSS-TTSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCTT--EECCTTSTTSCC
T ss_pred CCCCCCCCCCCCCCCchh-ccChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCcc--cccCcccccccc
Confidence 346777777765333344 67899999999 777 99999998 8889999999999999997642 333332111110
Q ss_pred -------cccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHH-
Q 047737 121 -------LLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMIL- 192 (265)
Q Consensus 121 -------~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~- 192 (265)
....+.+ ++..+|+.|+++|+++ ++.|+.++++.+.+.+.++++++++.|.+. |+++|+.+.+.
T Consensus 81 ~~~~~~~~~~~~~~-l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~------g~~~d~~~~~~~ 152 (412)
T 2zbx_A 81 TSPRFEAVRESPQA-FIGLDPPEHGTRRRMT-ISEFTVKRIKGMRPEVEEVVHGFLDEMLAA------GPTADLVSQFAL 152 (412)
T ss_dssp CSGGGC----CCCC-GGGCCTTHHHHHHTTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHH------CSCEEHHHHTTT
T ss_pred cccccccccccccc-cccCCcHHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc------CCCccHHHHHHH
Confidence 0001334 4455799999999999 999999999999999999999999999753 56899999886
Q ss_pred HHHHHHhhHHhcccccc
Q 047737 193 AVSNNIATRCIFGRKVE 209 (265)
Q Consensus 193 ~~t~~vi~~~~fG~~~~ 209 (265)
.+++|+++. +||.+.+
T Consensus 153 ~~~~~vi~~-~~G~~~~ 168 (412)
T 2zbx_A 153 PVPSMVICR-LLGVPYA 168 (412)
T ss_dssp HHHHHHHHH-HHTCCGG
T ss_pred HHHHHHHHH-HcCCCHH
Confidence 599999997 7998765
No 34
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.76 E-value=2.6e-17 Score=137.12 Aligned_cols=151 Identities=13% Similarity=0.163 Sum_probs=118.8
Q ss_pred CCCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEEe-CCcc-EEEeccHHHHHHHHHhccccccCCCCcccc--
Q 047737 43 NLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYF-GNSP-SLVVSSAEVASEMMKTHDIAFSNRPRSIAT-- 118 (265)
Q Consensus 43 ~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~-~v~v~~p~~i~~il~~~~~~~~~~~~~~~~-- 118 (265)
+.+|+|+++|+.++ . ..+++.++.+++ +||||+++.+ +|.+ .++++||+++++|+.+ ..|++++.....
T Consensus 8 ~~~~~~~~~p~~~~---~-~~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~ 80 (406)
T 1s1f_A 8 QAVPPVRDWPAVDL---P-GSDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQVT 80 (406)
T ss_dssp CCSCCEEECCCCCC---C-TTCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTTBC
T ss_pred hhccCCCCCCCCcc---c-ccCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCCcc
Confidence 45678887888776 3 578999999885 7999999996 5666 9999999999999975 356665432211
Q ss_pred --cc-cccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHH
Q 047737 119 --KI-LLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAV 194 (265)
Q Consensus 119 --~~-~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~ 194 (265)
.. ....+.++++ .+|+.|+++|+++ +++|++++++.+.+.+.++++++++.|.+. ++++|+.+.+ ..+
T Consensus 81 ~~~~~~~~~~~~l~~-~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~------~~~~d~~~~~~~~~ 152 (406)
T 1s1f_A 81 RLAPHFIPARGAVGF-LDPPDHTRLRRSV-AAAFTARGVERVRERSRGMLDELVDAMLRA------GPPADLTEAVLSPF 152 (406)
T ss_dssp BSSSSCSSCTTSGGG-CCTTHHHHHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHHHHHHH------CSSEEHHHHTTTHH
T ss_pred ccccccccccccccc-CCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc------CCCccHHHHHhhHh
Confidence 11 1112455544 5699999999999 999999999999999999999999999742 4589998766 579
Q ss_pred HHHHhhHHhcccccc
Q 047737 195 SNNIATRCIFGRKVE 209 (265)
Q Consensus 195 t~~vi~~~~fG~~~~ 209 (265)
++|+++. +||.+.+
T Consensus 153 ~~~vi~~-~~G~~~~ 166 (406)
T 1s1f_A 153 PIAVICE-LMGVPAT 166 (406)
T ss_dssp HHHHHHH-HHTCCGG
T ss_pred HHHHHHH-HhCCCHH
Confidence 9999998 6998775
No 35
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.75 E-value=4e-18 Score=143.02 Aligned_cols=154 Identities=11% Similarity=0.081 Sum_probs=118.1
Q ss_pred CCCCCCCCCCCCcccccccccc---C-CCchhHHHHHHhhcCCeEEEEe-CCccEEEeccHHHHHHHHHhccccccCCCC
Q 047737 40 NKLNLPPSPPRLPIIGNLHQIV---Q-NVPHRSLKALSDRYGPIILVYF-GNSPSLVVSSAEVASEMMKTHDIAFSNRPR 114 (265)
Q Consensus 40 ~~~~~~pgp~~~p~~G~~~~~~---~-~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~ 114 (265)
.+.+.||| ++|++.+.. . .+++..+.++++ ||||++++. |+.+.+++++|+.+++++.+. ..|++++.
T Consensus 3 ~~~~~pp~-----~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~-~~fs~r~~ 75 (428)
T 1cpt_A 3 ARATIPEH-----IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQP-GLFSNAEG 75 (428)
T ss_dssp TTCCSCHH-----HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCT-TTEESSSS
T ss_pred cccccchh-----hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCc-hhccCccc
Confidence 35567777 888765441 1 457788888877 799999998 678999999999999999654 46776654
Q ss_pred -cccc---c-c-c---cc---C-CceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 047737 115 -SIAT---K-I-L---LY---D-GKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHG 181 (265)
Q Consensus 115 -~~~~---~-~-~---~~---~-~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 181 (265)
.... . . + .+ . +.+ ++..+|+.|+++|+++ +++|+.++++.+.+.+.++++++++.|.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~g~~~~~~~~-l~~~~g~~~~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~------ 147 (428)
T 1cpt_A 76 SEILYDQNNEAFMRSISGGCPHVIDS-LTSMDPPTHTAYRGLT-LNWFQPASIRKLEENIRRIAQASVQRLLDF------ 147 (428)
T ss_dssp CSSCCCHHHHHHHHHHTTTSSCSSCC-GGGCCTTHHHHHHHHH-HTTSSHHHHGGGHHHHHHHHHHHHHHHHTS------
T ss_pred cccCCcccccchhccccccccccccc-cccCChHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 2211 1 1 1 11 0 234 4455699999999999 999999999999999999999999999742
Q ss_pred CccccHHHH-HHHHHHHHhhHHhcccccc
Q 047737 182 GSTINLSEM-ILAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 182 ~~~vd~~~~-~~~~t~~vi~~~~fG~~~~ 209 (265)
++++|+.+. ...+++|+|+.+ ||.+.+
T Consensus 148 ~~~~d~~~~~~~~~~~~vi~~~-fG~~~~ 175 (428)
T 1cpt_A 148 DGECDFMTDCALYYPLHVVMTA-LGVPED 175 (428)
T ss_dssp SSEEEHHHHTTTTHHHHHHHHH-HTCCGG
T ss_pred CCCeehHHHHHhhhHHHHHHHH-cCCCHh
Confidence 357999855 467999999999 998775
No 36
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.75 E-value=4.1e-18 Score=144.68 Aligned_cols=164 Identities=10% Similarity=0.054 Sum_probs=119.9
Q ss_pred CCCCCCCCCCCCcccccccccc----CC-CchhHHHHHHhhcCC-eEEEEeCCc-------cEEEeccHHHHHHHHHh--
Q 047737 40 NKLNLPPSPPRLPIIGNLHQIV----QN-VPHRSLKALSDRYGP-IILVYFGNS-------PSLVVSSAEVASEMMKT-- 104 (265)
Q Consensus 40 ~~~~~~pgp~~~p~~G~~~~~~----~~-~~~~~~~~~~~~yG~-i~~~~~~~~-------~~v~v~~p~~i~~il~~-- 104 (265)
.+.+.+|||.++|++|++.++. .. +++.++.+++++||+ ||++++++. ..|++.+++..+.++..
T Consensus 6 ~Pl~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~ 85 (473)
T 3dan_A 6 KPLREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVSK 85 (473)
T ss_dssp SCBCCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTTT
T ss_pred CCCCCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCcc
Confidence 5667789999999999988753 45 789999999999999 999998743 44445555544344421
Q ss_pred --ccccccCCCCcccccccccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 047737 105 --HDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGG 182 (265)
Q Consensus 105 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (265)
+...+...... ............+...+|+.|+++|+++ .+.|+++ ++.+.+.+.++++++++.|.+. ..++
T Consensus 86 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~h~~~R~~~-~~~f~~~-~~~~~~~i~~~~~~ll~~~~~~---~~~~ 159 (473)
T 3dan_A 86 VEKKDLFTGTYMP-STKLTGGYRVLSYLDPSEPRHAQLKNLL-FFMLKNS-SNRVIPQFETTYTELFEGLEAE---LAKN 159 (473)
T ss_dssp EECSSCTTSSSCC-CGGGGTTSCCGGGCCTTSHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred eeccccccccccC-CccccCCCcceeeeCCCcHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---hccC
Confidence 11112111111 1112211112334556799999999999 9999995 8999999999999999999763 2234
Q ss_pred ccccHHHHHHHHHHHHhhHHhcccccc
Q 047737 183 STINLSEMILAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 183 ~~vd~~~~~~~~t~~vi~~~~fG~~~~ 209 (265)
+++|+.+++..+++++++.++||.+++
T Consensus 160 ~~vdl~~~~~~~~~~~i~~~~~G~~~~ 186 (473)
T 3dan_A 160 GKAAFNDVGEQAAFRFLGRAYFNSNPE 186 (473)
T ss_dssp SCEECHHHHHHHHHHHHHHHHHSCCGG
T ss_pred CcccHHHHHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999987
No 37
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.75 E-value=1.7e-18 Score=147.17 Aligned_cols=156 Identities=12% Similarity=0.097 Sum_probs=116.9
Q ss_pred CCCCCCCCCCC-CccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCc-cc
Q 047737 40 NKLNLPPSPPR-LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRS-IA 117 (265)
Q Consensus 40 ~~~~~~pgp~~-~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~-~~ 117 (265)
++.+.||||++ +|++||++.+ ..+++..+.+++++|||||++++|+.++++++||+.+++++.++.. ++.+... ..
T Consensus 15 ~~~~~pPgp~~~~P~iG~~~~~-~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~~~~~ 92 (475)
T 3b98_A 15 RRRNEPPLDKGMIPWLGHALEF-GKDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSYAQVL 92 (475)
T ss_dssp CCTTCCCEECCSSTTTBTHHHH-HHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHHHHHH
T ss_pred cCCCCCCCCCCCcchHHhHHHH-hhCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHHHHHH
Confidence 45567899987 9999999988 6789999999999999999999999999999999999999976542 3222111 11
Q ss_pred ccccccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccC-C-CCccccHHHHHHHHH
Q 047737 118 TKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCING-H-GGSTINLSEMILAVS 195 (265)
Q Consensus 118 ~~~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~vd~~~~~~~~t 195 (265)
..... |.+.+ ..+|+.| |+++ .++|+.++++.+.+.+.+++.++++.+... . . ....+++.+.+..++
T Consensus 93 ~~~~~--g~~~~-~~~~~~~---R~~~-~~~f~~~~l~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 162 (475)
T 3b98_A 93 MKRIF--NMILP-SHNPESE---KKRA-EMHFQGASLTQLSNSMQNNLRLLMTPSEMG---LKTSEWKKDGLFNLCYSLL 162 (475)
T ss_dssp HHHTT--CCCCT-TCCHHHH---HHHH-HHHTSHHHHHHHHHHHHHHHHHHSSTTTTT---CSSCSCEEEEHHHHHHHHH
T ss_pred HHHHh--CCCCC-CCChHHH---HHHH-HHHcChhhHHHHHHHHHHHHHHHHhhcccc---cCCCCceeehHHHHHHHHH
Confidence 11111 44444 3446655 5777 889999999999999999999888876432 1 1 123578888888888
Q ss_pred HHHhhHHhcccc
Q 047737 196 NNIATRCIFGRK 207 (265)
Q Consensus 196 ~~vi~~~~fG~~ 207 (265)
+++++...||.+
T Consensus 163 ~~~~~~~~~g~~ 174 (475)
T 3b98_A 163 FKTGYLTVFGAE 174 (475)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHhhhheeCCc
Confidence 888888888854
No 38
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.73 E-value=4.5e-17 Score=136.00 Aligned_cols=155 Identities=15% Similarity=0.083 Sum_probs=117.3
Q ss_pred CCCCCCCCCCCCCccc--cccccc----cCCCchhHHHHHHhhcC--CeEEEE-eCCccEEEeccHHHHHHHHHhccccc
Q 047737 39 TNKLNLPPSPPRLPII--GNLHQI----VQNVPHRSLKALSDRYG--PIILVY-FGNSPSLVVSSAEVASEMMKTHDIAF 109 (265)
Q Consensus 39 ~~~~~~~pgp~~~p~~--G~~~~~----~~~~~~~~~~~~~~~yG--~i~~~~-~~~~~~v~v~~p~~i~~il~~~~~~~ 109 (265)
.++.+.||||++.|.. +.+-.+ ...+++..+.+++ +|| ||++++ +| +.++++||+++++++.+ ...|
T Consensus 7 ~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~~-~~~f 82 (415)
T 2zwu_A 7 QSNANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYED-YRHF 82 (415)
T ss_dssp ----CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHHC-TTTE
T ss_pred cCccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHcC-cccc
Confidence 3567889999988864 432211 1456788888885 789 999998 44 69999999999999964 4467
Q ss_pred cCCC-CcccccccccCCce-eEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccH
Q 047737 110 SNRP-RSIATKILLYDGKD-LGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINL 187 (265)
Q Consensus 110 ~~~~-~~~~~~~~~~~~~~-~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~ 187 (265)
++++ ......... +.+ ++ ..+|+.|+++|+++ +++|++++++.+.+.+.++++++++.|.+. +++|+
T Consensus 83 ~~~~~~~~~~~~~~--~~~~l~-~~~g~~~~~~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~-------~~~d~ 151 (415)
T 2zwu_A 83 SSECPFIPREAGEA--YDFIPT-SMDPPEQRQFRALA-NQVVGMPVVDKLENRIQELACSLIESLRPQ-------GQCNF 151 (415)
T ss_dssp ETTSCSSSHHHHHH--CCCTTT-TCCTTTTHHHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHHHHGGG-------TEEEH
T ss_pred CCCcccCCCCcccc--ccccCc-cCCCcHHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhc-------CCccH
Confidence 7665 221111111 344 44 45699999999999 999999999999999999999999999753 37999
Q ss_pred HHHH-HHHHHHHhhHHhcccccc
Q 047737 188 SEMI-LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 188 ~~~~-~~~t~~vi~~~~fG~~~~ 209 (265)
.+.+ ..+++|+++.+ ||.+.+
T Consensus 152 ~~~~~~~~~~~vi~~~-~G~~~~ 173 (415)
T 2zwu_A 152 TEDYAEPFPIRIFMLL-AGLPEE 173 (415)
T ss_dssp HHHTTTHHHHHHHHHH-HTCCGG
T ss_pred HHHHHHHHHHHHHHHH-cCCCHH
Confidence 9865 78999999999 999875
No 39
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.73 E-value=7.3e-17 Score=134.52 Aligned_cols=136 Identities=10% Similarity=0.087 Sum_probs=107.3
Q ss_pred CCCchhHHHHHHhhcCCeEEEEe-CCccEEEeccHHHHHHHHHhccccccCCCCcccccc---ccc----CCceeEecCC
Q 047737 62 QNVPHRSLKALSDRYGPIILVYF-GNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATKI---LLY----DGKDLGFAEY 133 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~ 133 (265)
..+++..+.++ ++||||+++++ ++.+.++++||+++++++.++. +++++....... ... .+.+ ++..+
T Consensus 23 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~ 98 (408)
T 3abb_A 23 PYQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDPR--LSSDWGHPDFPVVVRRTEDRGGLAFP-LIGVD 98 (408)
T ss_dssp TTSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCTT--EECCTTSTTCCCCC---------CCT-TTTCC
T ss_pred ccCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCCC--cccccccccccccccCCccccccccc-cccCC
Confidence 67899999999 89999999998 7889999999999999997642 333322000000 110 1234 34467
Q ss_pred ChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHH-HHHHHHhhHHhcccccc
Q 047737 134 GEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMIL-AVSNNIATRCIFGRKVE 209 (265)
Q Consensus 134 g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~ 209 (265)
|+.|+++|+++ ++.|+.++++.+.+.+.++++++++.|.+. |+++|+.+.+. .+++|+++. +||.+.+
T Consensus 99 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~------g~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 167 (408)
T 3abb_A 99 DPVHARQRRML-IPSFGVKRMNAIRPRLQSLVDRLLDDMLAK------GPGADLVSAFALPVPSVAICE-LLGVPYG 167 (408)
T ss_dssp TTHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHT------CSCEEHHHHTTTHHHHHHHHH-HHTCCGG
T ss_pred chHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc------CCCeehHHHHHHHHHHHHHHH-HhCCCHH
Confidence 99999999999 999999999999999999999999999752 56899998876 599999997 7998765
No 40
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.71 E-value=9.6e-17 Score=132.76 Aligned_cols=138 Identities=11% Similarity=0.040 Sum_probs=111.2
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeCC----ccEEEeccHHHHHHHHHhccccccCCCCcccccccccCCceeEecCCChhH
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFGN----SPSLVVSSAEVASEMMKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYW 137 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~~----~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w 137 (265)
..+++..+.++ ++||||++++.++ .+.++++||+++++++ ++...|++++.......... +.+.++..+|+.|
T Consensus 11 ~~~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~g~~~ 87 (384)
T 3oo3_A 11 RLDPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAIL-ADHERFSSMRPVDDEADRAL-LPGILQAYDPPDH 87 (384)
T ss_dssp TTEECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHH-HCTTTEECSCCCC-----CC-CTTCGGGCCTTHH
T ss_pred ccChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHH-hCchhccCCccccccccccc-cccccccCCChhH
Confidence 67899999999 4999999999876 8999999999999999 44567877665432221111 2344566679999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHHHHhhHHhcccccc
Q 047737 138 RQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 138 ~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~ 209 (265)
+++|+.+ +|+|++++++.+.+.+.++++++++.|.+. |+++|+.+.+...+.+++...+||.+.+
T Consensus 88 ~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~------~~~~d~~~~~~~~~~~~v~~~~~G~~~~ 152 (384)
T 3oo3_A 88 TRLRRTV-APAYSARRMERLRPRIEEIVEECLDDFESV------GAPVDFVRHAAWPIPAYIACEFLGVPRD 152 (384)
T ss_dssp HHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHS------CSSEEHHHHTTTHHHHHHHHHHHTCCGG
T ss_pred HHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc------CCCccHHHHHHHHHHHHHHHHHcCCCHH
Confidence 9999999 999999999999999999999999999753 6789999999988888888889998875
No 41
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.70 E-value=4e-16 Score=129.86 Aligned_cols=136 Identities=15% Similarity=0.210 Sum_probs=108.9
Q ss_pred CCCchhHHHHHHhhcCCeEEEEe-CCccEEEeccHHHHHHHHHhccccccCCCC--c-cccccccc--CCceeEecCCCh
Q 047737 62 QNVPHRSLKALSDRYGPIILVYF-GNSPSLVVSSAEVASEMMKTHDIAFSNRPR--S-IATKILLY--DGKDLGFAEYGE 135 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~--~-~~~~~~~~--~~~~~~~~~~g~ 135 (265)
..+++..+.++ ++||||+++++ |+.+.++++||+++++++.++ .|++++. . ........ .+.++ +..+|+
T Consensus 18 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~ 93 (403)
T 3aba_A 18 PFLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKPGRGSL-LWQDEP 93 (403)
T ss_dssp TTSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCCCTTCC-TTCCTT
T ss_pred ccChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccc-ccCCch
Confidence 57888999999 89999999997 889999999999999999764 4665532 1 11101111 24554 455699
Q ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhcccccc
Q 047737 136 YWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 136 ~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~ 209 (265)
.|+++|+++ +++|++++++.+.+.+.++++++++.|.+. ++++|+.+.+ ..+++|+++. +||.+.+
T Consensus 94 ~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~------~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 160 (403)
T 3aba_A 94 EHTSDRKLL-AKEFTVRRMQALRPNIQRIVDEHLDAIEAR------GGPVDLVKTFANAVPSMVISD-LFGVPVE 160 (403)
T ss_dssp HHHHHHHHH-HHHSCHHHHHTTHHHHHHHHHHHHHHHHHH------CSCEEHHHHTTTHHHHHHHHH-HHTCCGG
T ss_pred hHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHHHhc------CCCccHHHHHHHHHHHHHHHH-HcCCCHH
Confidence 999999999 999999999999999999999999999732 4689998766 5799999998 7998765
No 42
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.70 E-value=1e-16 Score=134.65 Aligned_cols=154 Identities=12% Similarity=0.108 Sum_probs=118.0
Q ss_pred CCCCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEE--------eCCccEEEeccHHHHHHHHHhccccccCCC
Q 047737 42 LNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVY--------FGNSPSLVVSSAEVASEMMKTHDIAFSNRP 113 (265)
Q Consensus 42 ~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~--------~~~~~~v~v~~p~~i~~il~~~~~~~~~~~ 113 (265)
...||.|..+++++....- ..+++..+.++ ++||||+++. +|+.+.+++++|+++++++.+. ..|++++
T Consensus 17 ~~~p~~~~~~~~~~~~~~~-~~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~~-~~fs~~~ 93 (433)
T 3ivy_A 17 VPSPNLPPGFDFTDPAIYA-ERLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRHS-DVFSSYE 93 (433)
T ss_dssp ---CCCCTTCCTTCHHHHT-TCCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHCT-TTEESTT
T ss_pred cCCCCCCCCCCCCCHHHhh-cCCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcCh-hhccCCc
Confidence 3456677777776554333 56799999999 7899999998 4557899999999999999653 5676655
Q ss_pred Cccccc--------ccccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccc
Q 047737 114 RSIATK--------ILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTI 185 (265)
Q Consensus 114 ~~~~~~--------~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v 185 (265)
...... .....+.++ +..+|+.|+++|+++ +++|+++.++.+.+.+.++++++++.|.+. +++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l-~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-------~~~ 164 (433)
T 3ivy_A 94 NGVIPRFKNDIAREDIEVQRFVM-LNMDAPHHTRLRKII-SRGFTPRAVGRLHDELQERAQKIAAEAAAA-------GSG 164 (433)
T ss_dssp TCSCCCCCTTCCHHHHHGGGGSG-GGCCTTHHHHHHHHH-GGGSCHHHHHTTHHHHHHHHHHHHHHHHHH-------CEE
T ss_pred ccccccccccccccccccccCCc-cccChHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhhC-------CCe
Confidence 432221 111113444 456699999999999 999999999999999999999999999753 579
Q ss_pred cHHHHH-HHHHHHHhhHHhccccc
Q 047737 186 NLSEMI-LAVSNNIATRCIFGRKV 208 (265)
Q Consensus 186 d~~~~~-~~~t~~vi~~~~fG~~~ 208 (265)
|+.+.+ ..+++++|+.+ ||.+.
T Consensus 165 d~~~~~~~~~~~~vi~~l-~G~~~ 187 (433)
T 3ivy_A 165 DFVEQVSCELPLQAIAGL-LGVPQ 187 (433)
T ss_dssp EHHHHTTSHHHHHHHHHH-HTCCH
T ss_pred eHHHHHHHHHHHHHHHHH-cCCCH
Confidence 998887 99999999996 88654
No 43
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.70 E-value=5.8e-16 Score=129.44 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=110.5
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeC-CccEEEeccHHHHHHHHHhccccccCCCCcc---cccc-c---ccCCceeEecCC
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFG-NSPSLVVSSAEVASEMMKTHDIAFSNRPRSI---ATKI-L---LYDGKDLGFAEY 133 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~---~~~~-~---~~~~~~~~~~~~ 133 (265)
..+++..+.+++++ |||++++++ |.+.++++||+++++++.++ .|++++... .... . ...+.++ +..+
T Consensus 28 ~~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~d 103 (417)
T 3tyw_A 28 PFAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPF-IRTD 103 (417)
T ss_dssp TTSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCG-GGCC
T ss_pred ccCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccch-hhcC
Confidence 67999999999998 999999997 58999999999999999875 565543211 1111 0 0113444 4456
Q ss_pred ChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhcccccc
Q 047737 134 GEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 134 g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~ 209 (265)
|+.|+++|+++ +++|++++++.+.+.+.++++++++.|.+. |+++|+.+.+ ..+++++++.+ ||.+.+
T Consensus 104 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~------g~~~d~~~~~~~~~~~~vi~~~-~G~~~~ 172 (417)
T 3tyw_A 104 APEHTRYRRML-LPAFTVRRVRAMRPAVQARVDEILDGMLAA------GGPVDLVSAYANAVSTSVICEL-LGIPRH 172 (417)
T ss_dssp HHHHHHHHHHH-GGGGCHHHHHHTHHHHHHHHHHHHHHHHHH------CSSEEHHHHTHHHHHHHHHHHH-HTCCTT
T ss_pred CcHHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhh------CCCcchHHHHHHHHHHHHHHHH-hCCCHH
Confidence 99999999999 999999999999999999999999999764 5679999987 58999999997 998875
No 44
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.68 E-value=1.3e-16 Score=132.91 Aligned_cols=138 Identities=18% Similarity=0.266 Sum_probs=108.8
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCC--ccc---cc---cccc--CCceeEec
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPR--SIA---TK---ILLY--DGKDLGFA 131 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~--~~~---~~---~~~~--~~~~~~~~ 131 (265)
..+++..+.++ ++||||+++++++.+.++++||+++++|+.++. +++++. ... .. .... .+.+ ++.
T Consensus 14 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ 89 (408)
T 1odo_A 14 GADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVEN-MFT 89 (408)
T ss_dssp CTTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCS-GGG
T ss_pred cCChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--ccccccccccccccccccccccccccccc-ccc
Confidence 67889999999 999999999998889999999999999997543 333321 010 00 0000 1334 355
Q ss_pred CCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHH-HHHHHHhhHHhcccccc
Q 047737 132 EYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMIL-AVSNNIATRCIFGRKVE 209 (265)
Q Consensus 132 ~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~ 209 (265)
.+|+.|+++|+++ +++|++++++.+.+.+.++++++++.|.+. .+++++|+.+.+. .+++|+++. +||.+.+
T Consensus 90 ~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~----~~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 162 (408)
T 1odo_A 90 AYGPNHRKLRRLV-APAFSARRVDAMRPAVEAMVTGLVDRLAEL----PAGEPVDLRQELAYPLPIAVIGH-LMGVPQD 162 (408)
T ss_dssp CCHHHHHHHHHTT-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHS----CTTSCEEHHHHTTTHHHHHHHHH-HHTCCHH
T ss_pred cCChHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCcchHHHHhhhhHHHHHHH-HhCCCHH
Confidence 6699999999999 999999999999999999999999999753 2367899998887 599999996 7998764
No 45
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.67 E-value=1.1e-15 Score=127.09 Aligned_cols=136 Identities=14% Similarity=0.143 Sum_probs=108.7
Q ss_pred CCCchhHHHHHHhhcCCeEEEEe-CCccEEEeccHHHHHHHHHhccccccCCCCcc-cccccccCCcee-EecCCC----
Q 047737 62 QNVPHRSLKALSDRYGPIILVYF-GNSPSLVVSSAEVASEMMKTHDIAFSNRPRSI-ATKILLYDGKDL-GFAEYG---- 134 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~g---- 134 (265)
..+++..+.++ ++||||+++++ ++.+.++++||+++++|+.++ .|.+++... ...... .+.+. ++..+|
T Consensus 25 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~-~~~~~~l~~~~g~~~~ 100 (404)
T 2xbk_A 25 MLKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYV-RSPFLDLLISDADAES 100 (404)
T ss_dssp TTBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSS-CCHHHHTTCBCSCHHH
T ss_pred ccCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCccc-ccccccceeeCCCCCC
Confidence 56889999999 89999999997 789999999999999999764 355554321 111111 13441 344569
Q ss_pred --hhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhcccccc
Q 047737 135 --EYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 135 --~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~ 209 (265)
+.|+++|+++ +++|++++++.+.+.+.++++++++.|.+. |+++|+.+.+ ..+++++++. +||.+.+
T Consensus 101 ~~~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~------g~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 170 (404)
T 2xbk_A 101 GRRQHAETRRLL-TPLFSARRVLEMQPKVEEAADTLLDAFIAQ------GPPGDLHGELTVPFALTVLCE-VIGVPPQ 170 (404)
T ss_dssp HHHHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHT------CSSEEHHHHTHHHHHHHHHHH-HHTCCGG
T ss_pred CCchHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc------CCCeeHHHHHHHHHHHHHHHH-HhCCCHH
Confidence 9999999999 999999999999999999999999999752 5689998766 5799999997 7998765
No 46
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.67 E-value=3.6e-16 Score=131.36 Aligned_cols=152 Identities=13% Similarity=0.032 Sum_probs=116.3
Q ss_pred CCchhHHHHHHhhcCCeEEEEeC-------CccEEEeccHHHHHHHHHhccccccCCCCc--c-cccccccCCceeEecC
Q 047737 63 NVPHRSLKALSDRYGPIILVYFG-------NSPSLVVSSAEVASEMMKTHDIAFSNRPRS--I-ATKILLYDGKDLGFAE 132 (265)
Q Consensus 63 ~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~ 132 (265)
.+++..+.+++ +||||+++.++ +.+.++++||+++++|+.++ ..|++++.. . ........+.++++ .
T Consensus 44 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~-~ 120 (435)
T 2wm5_A 44 DVRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGSMIV-L 120 (435)
T ss_dssp HHHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHGGGG-C
T ss_pred CChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhcccccc-C
Confidence 56788888886 68999999986 67899999999999999875 467766521 1 11111111345444 4
Q ss_pred CChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhccccccch
Q 047737 133 YGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRKVEDL 211 (265)
Q Consensus 133 ~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~ 211 (265)
+|+.|+++|+++ +++|++++++.+.+.+.++++++++.|.+. .++.++|+.+.+ ..+++|+++.+ ||.+.+
T Consensus 121 dg~~h~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~----~~~~~vd~~~~~~~~~~~~vi~~~-~G~~~~-- 192 (435)
T 2wm5_A 121 DDPRHQRLRSIV-SRAFTPKVVARIEAAVRDRAHRLVSSMIAN----NPDRQADLVSELAGPLPLQIICDM-MGIPKA-- 192 (435)
T ss_dssp CTTHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHHHHHHHHHHH----CTTSEEEHHHHTTTHHHHHHHHHH-HTCCGG--
T ss_pred CcHHHHHHHHHh-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCcEehHHHHHHHHHHHHHHHH-cCCCHH--
Confidence 699999999999 999999999999999999999999999864 234589999766 79999999999 999875
Q ss_pred hhcCCcchhHHHHHHHHHHH
Q 047737 212 EEENGSGESKFGELTKKNMI 231 (265)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~ 231 (265)
..+++.+..+.+..
T Consensus 193 ------~~~~~~~~~~~~~~ 206 (435)
T 2wm5_A 193 ------DHQRIFHWTNVILG 206 (435)
T ss_dssp ------GHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhc
Confidence 13455555555443
No 47
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.67 E-value=2.1e-16 Score=131.85 Aligned_cols=144 Identities=11% Similarity=0.143 Sum_probs=108.4
Q ss_pred ccCCCCCCCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcc
Q 047737 37 RSTNKLNLPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSI 116 (265)
Q Consensus 37 ~~~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~ 116 (265)
++..+.+.+|||+. ..+++..+.++++ |||| +.++.+.++++||+.+++++.++ ..|++++...
T Consensus 13 ~~~~pl~~~PGp~~-----------~~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~~~~~~ 76 (411)
T 2jjn_A 13 RTLTTIDEVPGMAD-----------ETALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSSDPTRV 76 (411)
T ss_dssp ----CCCSCCCSSC-----------HHHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEESCGGGG
T ss_pred cccCCCCCCCCccc-----------ccChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccCccccc
Confidence 33455666788871 2567888889876 9999 56667899999999999999764 4677665322
Q ss_pred cccccccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHH-HHHHH
Q 047737 117 ATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEM-ILAVS 195 (265)
Q Consensus 117 ~~~~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~-~~~~t 195 (265)
. ......+.++ ...+|+.|+++|+++ +++|++++++.+.+.+.++++++++. . ++++|+.+. ...++
T Consensus 77 ~-~~~~~~~~~~-~~~~g~~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~--~-------~~~~d~~~~~~~~~~ 144 (411)
T 2jjn_A 77 I-EGASPTPGMI-HEIDPPEHRALRKVV-SSAFTPRTISDLEPRIRDVTRSLLAD--A-------GESFDLVDVLAFPLP 144 (411)
T ss_dssp S-TTCCCCTTCG-GGCCTTHHHHHHHHH-HHHSCHHHHHTTHHHHHHHHHHHHHT--S-------CSEEEHHHHTTTHHH
T ss_pred C-Cccccccccc-ccCCchHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHhc--C-------CCceeHHHHHHHHHH
Confidence 1 1111123444 445699999999999 99999999999999999999999987 2 357999855 56899
Q ss_pred HHHhhHHhcccccc
Q 047737 196 NNIATRCIFGRKVE 209 (265)
Q Consensus 196 ~~vi~~~~fG~~~~ 209 (265)
+|+|+.+ ||.+.+
T Consensus 145 ~~vi~~~-fG~~~~ 157 (411)
T 2jjn_A 145 VTIVAEL-LGLPPM 157 (411)
T ss_dssp HHHHHHH-HTCCSC
T ss_pred HHHHHHH-cCCCHH
Confidence 9999998 998875
No 48
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.66 E-value=8.6e-16 Score=128.13 Aligned_cols=135 Identities=13% Similarity=0.128 Sum_probs=108.4
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcccc-----cccccCCceeEecCCChh
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIAT-----KILLYDGKDLGFAEYGEY 136 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~ 136 (265)
..+++..+.++ ++||||+++++++.+.++++||+++++++.++. |++++..... ......+.++ ...+|+.
T Consensus 19 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~~ 94 (411)
T 3a4g_A 19 WQNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDPR--LSKDWRHTLPEDQRADMPATPTPMM-ILMDPPD 94 (411)
T ss_dssp TTCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCTT--EESCGGGGSCGGGCTTCCSCSSCCG-GGCCTTH
T ss_pred hcCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCCC--cccccccccccccccccCccccccc-ccCCchH
Confidence 67899999999 899999999999999999999999999997653 7665432110 1111124554 4556999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHH-HHHHHHHHhhHHhcccccc
Q 047737 137 WRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEM-ILAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 137 w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~-~~~~t~~vi~~~~fG~~~~ 209 (265)
|+++|+++ +++|++++++.+.+.+.++++++++.|.+ ++++|+.+. ...+++|+|+.+ ||.+.+
T Consensus 95 h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~~~vd~~~~~~~~~~~~vi~~~-~G~~~~ 159 (411)
T 3a4g_A 95 HTRLRKLV-GRSFTVRRMNELEPRITEIADGLLAGLPT-------DGPVDLMREYAFQIPVQVICEL-LGVPAE 159 (411)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHHHHSCS-------SSCEEHHHHTTTTHHHHHHHHH-HTCCGG
T ss_pred HHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCccHHHHHHHHhHHHHHHHH-hCCCHH
Confidence 99999999 99999999999999999999999999853 257999755 568999999975 998775
No 49
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.66 E-value=1e-15 Score=127.89 Aligned_cols=136 Identities=13% Similarity=0.115 Sum_probs=108.2
Q ss_pred CCCchhHHHHHHhhcCCeEEEEe-CCccEEEeccHHHHHHHHHhccccccCCCCc-cccccccc--CCceeEecCCChhH
Q 047737 62 QNVPHRSLKALSDRYGPIILVYF-GNSPSLVVSSAEVASEMMKTHDIAFSNRPRS-IATKILLY--DGKDLGFAEYGEYW 137 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~g~~w 137 (265)
..+++..+.++ ++||||+++++ ++.+.++++||+++++|+.++ .|.+++.. ........ .+.++ +..+|+.|
T Consensus 36 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~l-~~~dg~~h 111 (417)
T 2y5n_A 36 GLTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGGL-LSMDPPEH 111 (417)
T ss_dssp SCCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCSG-GGCCTTHH
T ss_pred ccCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccccccC-ccCCchHH
Confidence 57889999999 89999999997 789999999999999999764 35554322 11111111 24454 45569999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhcccccc
Q 047737 138 RQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 138 ~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~ 209 (265)
+++|+++ +++|++++++.+.+.+.++++++++.|.+. +.++|+.+.+ ..+++|+++. +||.+.+
T Consensus 112 ~~~R~~l-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~------~~~vdl~~~~~~~~~~~vi~~-~~G~~~~ 176 (417)
T 2y5n_A 112 SRLRRLV-VKAFTARRAESLRPRAREIAHELVDQMAAT------GQPADLVAMFARQLPVRVICE-LLGVPSA 176 (417)
T ss_dssp HHHHHHH-HHHSCHHHHHHTHHHHHHHHHHHHHHHHHH------CSSEEHHHHTTTTHHHHHHHH-HHTCCGG
T ss_pred HHHHHHH-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhC------CCCeeHHHHHHHHhHHHHHHH-HcCCCHH
Confidence 9999999 999999999999999999999999999742 2279999776 4699999998 6998765
No 50
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.65 E-value=1.2e-15 Score=128.68 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=107.3
Q ss_pred chhHHHHHHhhcCCeE--EEE-eCCccEEEeccHHHHHHHHHhccccccCCCCcccccccc-------------cCCcee
Q 047737 65 PHRSLKALSDRYGPII--LVY-FGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATKILL-------------YDGKDL 128 (265)
Q Consensus 65 ~~~~~~~~~~~yG~i~--~~~-~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 128 (265)
++..+.++ ++||||+ ++. .|+.+.++|++++++++++.+. ..|++++......... ..+++
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~- 123 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVES- 123 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCC-
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccC-
Confidence 78888888 5789999 888 6778999999999999999665 6677665432211100 01233
Q ss_pred EecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhcccc
Q 047737 129 GFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRK 207 (265)
Q Consensus 129 ~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~ 207 (265)
++..+|+.|+++|+++ +++|++++++.+.+.+.++++++++.|.+. ++++|+.+.+ ..+++++|+.+ ||.+
T Consensus 124 l~~~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~------~~~~dl~~~~~~~~~~~vi~~l-~G~~ 195 (450)
T 3tkt_A 124 LVQMDAPKHPKLRRLT-QDWFMPKNLARLDGEIRKIANEAIDRMLGA------GEEGDFMALVAAPYPLHVVMQI-LGVP 195 (450)
T ss_dssp GGGCCTTHHHHHHHHH-HTTTSHHHHGGGHHHHHHHHHHHHHHHHHT------CSEEEHHHHTTTHHHHHHHHHH-TTCC
T ss_pred cccCCCHHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHHHhc------CCCEeeHHHHHHHHHHHHHHHH-cCCC
Confidence 4556699999999999 999999999999999999999999999752 5789998887 69999999995 8976
Q ss_pred cc
Q 047737 208 VE 209 (265)
Q Consensus 208 ~~ 209 (265)
.+
T Consensus 196 ~~ 197 (450)
T 3tkt_A 196 PE 197 (450)
T ss_dssp GG
T ss_pred hh
Confidence 54
No 51
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.65 E-value=2.3e-15 Score=125.58 Aligned_cols=138 Identities=16% Similarity=0.154 Sum_probs=108.6
Q ss_pred CCCchhHHHHHHhhcCCeEEEEe-CCccEEEeccHHHHHHHHHhccccccCCCCccccc------cccc---CCceeEec
Q 047737 62 QNVPHRSLKALSDRYGPIILVYF-GNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATK------ILLY---DGKDLGFA 131 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~ 131 (265)
..+++..+.+++ +||||+++++ |+.+.++++||+++++++.++ .|++++...... .... .+.+.++.
T Consensus 21 ~~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 97 (413)
T 2z36_A 21 PFAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDGFPLFTLDAATLQQLRSQPPLMLG 97 (413)
T ss_dssp TTBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTTCCCSSCCHHHHHHHTTSCCCGGG
T ss_pred ccCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccCccccccccccccccccccccccc
Confidence 578999999997 7899999998 888999999999999999863 466554221110 1100 14552344
Q ss_pred CCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHH-HHHHHHhhHHhcccccc
Q 047737 132 EYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMIL-AVSNNIATRCIFGRKVE 209 (265)
Q Consensus 132 ~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~ 209 (265)
.+|+.|+++|+++ +++|++++++.+.+.+.++++++++.|.+ ..++++|+.+.+. .+++++++.+ ||.+.+
T Consensus 98 ~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~-----~~~~~~d~~~~~~~~~~~~vi~~~-~G~~~~ 169 (413)
T 2z36_A 98 MDGAEHSAARRPV-IGEFTVKRLAALRPRIQDIVDHFIDDMLA-----TDQRPVDLVQALSLPVPSLVICEL-LGVPYT 169 (413)
T ss_dssp CCHHHHHHHHHHH-HGGGSHHHHHHHHHHHHHHHHHHHHHHTT-----CSCSSEEHHHHTTTHHHHHHHHHH-HTCCGG
T ss_pred cCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCCccHHHHHhhhhHHHHHHHH-hCCCHH
Confidence 5699999999999 99999999999999999999999999963 2256899986664 7999999994 998765
No 52
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.65 E-value=3.7e-16 Score=129.83 Aligned_cols=136 Identities=13% Similarity=0.081 Sum_probs=107.7
Q ss_pred CCCchhHHHHHHhhc--CCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcccccccccCCceeEecCCChhHHH
Q 047737 62 QNVPHRSLKALSDRY--GPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQ 139 (265)
Q Consensus 62 ~~~~~~~~~~~~~~y--G~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~ 139 (265)
..+++.++.+++++| |||+++..++ +.++++||+.+++++ ++...|++++......... .+...++..+|+.|++
T Consensus 18 ~~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~ 94 (398)
T 4fb2_A 18 DGTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVI-QNTKAFSNKGVTFPRYETG-EFELMMAGQDDPVHKK 94 (398)
T ss_dssp TSSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHH-TCCSSEEGGGCSSSCC-----CCCTTTTCCTTHHHH
T ss_pred hcChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHH-hChhhccCCcccccCCCCc-ccccCcccCCchHHHH
Confidence 678999999999999 9999999875 599999999999999 4455676665433211111 1333345667999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhcccccc
Q 047737 140 LWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 140 ~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~ 209 (265)
+|+++ +++|++++++.+.+.+.++++++++.|.+ ++.+|+...+ ..+++++++. +||.+.+
T Consensus 95 ~R~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~-------~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 156 (398)
T 4fb2_A 95 YRQLV-AKPFSPEATDLFTEQLRQSTNDLIDARIE-------LGEGDAATWLANEIPARLTAI-LLGLPPE 156 (398)
T ss_dssp HHHHH-HTTTCHHHHHTTHHHHHHHHHHHHHTTTT-------TTEEEHCCCCCTTHHHHHHHH-HTTSCGG
T ss_pred HHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHhh-------cCCccHHHHHHHHHHHHHHHH-HcCCCHH
Confidence 99999 99999999999999999999999998854 2468875554 6899999999 7898764
No 53
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.64 E-value=1e-15 Score=127.36 Aligned_cols=135 Identities=11% Similarity=0.130 Sum_probs=108.5
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCc--c----ccc---cc-cc----CCce
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRS--I----ATK---IL-LY----DGKD 127 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~--~----~~~---~~-~~----~~~~ 127 (265)
..+++..+.++ ++||||+++++++.+.++++||+++++++.++ .|++++.. . ... .. .. .+.+
T Consensus 13 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (404)
T 1z8o_A 13 HVDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFATN 89 (404)
T ss_dssp TSSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHSSS
T ss_pred ccCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhcccc
Confidence 56889999999 99999999999999999999999999999875 56665432 1 100 11 00 1455
Q ss_pred eEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhccc
Q 047737 128 LGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGR 206 (265)
Q Consensus 128 ~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~ 206 (265)
+ +..+|+.|+++|+++ +|+|++++++.+.+.+.++++++++.|.+ ++++|+.+.+ ..+++|+++. +||.
T Consensus 90 l-~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~~~~d~~~~~~~~~~~~vi~~-~~G~ 159 (404)
T 1z8o_A 90 M-GTSDPPTHTRLRKLV-SQEFTVRRVEAMRPRVEQITAELLDEVGD-------SGVVDIVDRFAHPLPIKVICE-LLGV 159 (404)
T ss_dssp G-GGCCTTHHHHHHHHH-HTTSCHHHHHHTHHHHHHHHHHHHHTSCS-------SSEEEHHHHTTTHHHHHHHHH-HTTC
T ss_pred c-ccCCCcHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHhhhh-------cCCcchHHHHhHHHHHHHHHH-HhCC
Confidence 4 445699999999999 99999999999999999999999998742 4689998765 6899999998 4998
Q ss_pred ccc
Q 047737 207 KVE 209 (265)
Q Consensus 207 ~~~ 209 (265)
+.+
T Consensus 160 ~~~ 162 (404)
T 1z8o_A 160 DEK 162 (404)
T ss_dssp CGG
T ss_pred CHH
Confidence 765
No 54
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.64 E-value=1.8e-15 Score=126.18 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=107.0
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeCC--ccEEEeccHHHHHHHHHhccccccCCCCccc----ccccccC-CceeEecCCC
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFGN--SPSLVVSSAEVASEMMKTHDIAFSNRPRSIA----TKILLYD-GKDLGFAEYG 134 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~~--~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~g 134 (265)
.++++..+.+++ +||||+++.+++ .+.+++++|+.+++|+.+ ..|++++.... ....... +.++ +..+|
T Consensus 26 g~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~l-~~~dg 101 (411)
T 2dkk_A 26 GPEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITND--PRFGRAEVTQRQITRLAPHFKPRPGSL-AFADQ 101 (411)
T ss_dssp SSCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTC--TTEESGGGGGSCBCBSSSCCCCCTTCS-TTCCT
T ss_pred cccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcC--CCcccCCCCCCCccccccchhcccccc-ccCCc
Confidence 456668998887 799999999754 789999999999999975 35655432211 1111101 3444 45679
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHH-HHHHHHhhHHhcccccc
Q 047737 135 EYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMIL-AVSNNIATRCIFGRKVE 209 (265)
Q Consensus 135 ~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~ 209 (265)
+.|+++|+++ +|+|++++++.+.+.+.+.++++++.|.+. |.++|+.+.+. .+++|+|+. +||.+.+
T Consensus 102 ~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~------g~~~dl~~~~~~~~~~~vi~~-l~G~~~~ 169 (411)
T 2dkk_A 102 PDHNRLRRAV-AGAFTVGATKRLRPRAQEILDGLVDGILAE------GPPADLVERVLEPFPIAVVSE-VMGVPAA 169 (411)
T ss_dssp THHHHHHHHH-GGGSSHHHHHHHHHHHHHHHHHHHHHHHHH------CSCEEHHHHTTTHHHHHHHHH-HHTCCSS
T ss_pred hHHHHHHHHh-hHhhCHHHHHHHHHHHHHHHHHHHHHHHhc------CCCeehHHHHHHHHHHHHHHH-HhCCCHH
Confidence 9999999999 999999999999999999999999999764 45899997775 799999998 5998775
No 55
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.63 E-value=1.1e-15 Score=127.32 Aligned_cols=136 Identities=14% Similarity=0.148 Sum_probs=107.2
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcccc---cc-cccCCceeEecCCChhH
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIAT---KI-LLYDGKDLGFAEYGEYW 137 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~g~~w 137 (265)
..+++..+.++ ++||||++++.++.+.++++||+++++++.++ ..|++++..... .. ....+.++ +..+|+.|
T Consensus 12 ~~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~~h 88 (404)
T 3ejb_B 12 LKNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQMM-LFQNQPDH 88 (404)
T ss_dssp HHCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTSG-GGCCTTHH
T ss_pred ccCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcch-hhcCCchH
Confidence 46788889888 58999999999999999999999999999876 566665532111 00 00113454 45569999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHH-HHHHHHHHhhHHhcccccc
Q 047737 138 RQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEM-ILAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 138 ~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~-~~~~t~~vi~~~~fG~~~~ 209 (265)
+++|+++ +++|++++++.+.+.+.++++++++.|.+ ++.+|+... ...+++++++.+ ||.+.+
T Consensus 89 ~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~-------~~~~d~~~~~~~~~~~~vi~~~-~G~~~~ 152 (404)
T 3ejb_B 89 RRLRTLA-SGAFTPRTTESYQPYIIETVHHLLDQVQG-------KKKMEVISDFAFPLASFVIANI-IGVPEE 152 (404)
T ss_dssp HHHHHHH-HGGGSHHHHHTTHHHHHHHHHHHHHTTTT-------TSEEEHHHHTHHHHHHHHHHHH-HTCCGG
T ss_pred HHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHhhh-------cCCcchHHHHHHHHHHHHHHHH-cCCCHH
Confidence 9999999 99999999999999999999999998853 467898655 456999999994 897764
No 56
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.62 E-value=5e-15 Score=123.61 Aligned_cols=134 Identities=13% Similarity=0.092 Sum_probs=106.7
Q ss_pred CCCchhHHHHHHhhcCCeE-----EEEeCCccEEEeccHHHHHHHHHhccccccCCCCcc-ccc--cc-c-cCCceeEec
Q 047737 62 QNVPHRSLKALSDRYGPII-----LVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSI-ATK--IL-L-YDGKDLGFA 131 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~-----~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~-~~~--~~-~-~~~~~~~~~ 131 (265)
..+++.++.+++ +||||+ +++. .+.++++||+++++++.++ ..|++++... ... .. . ..+.++++
T Consensus 24 ~~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~l~~- 98 (414)
T 2uuq_A 24 WPNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPPMVM- 98 (414)
T ss_dssp TTCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCCGGG-
T ss_pred ccCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCccccccccccccccc-
Confidence 467888998885 689999 7765 6899999999999999875 5677765432 111 11 1 22455544
Q ss_pred CCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHH-HHHHHHHHHHhhHHhcccccc
Q 047737 132 EYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLS-EMILAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 132 ~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~-~~~~~~t~~vi~~~~fG~~~~ 209 (265)
.+|+.|+++|+++ +++|++++++.+.+.+.++++++++.|.+. +++|+. +.+..+++|+++. +||.+.+
T Consensus 99 ~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-------~~vdl~~~~~~~~~~~vi~~-~~G~~~~ 168 (414)
T 2uuq_A 99 QDPPVHTEFRKLV-SRGFTPRQVETVEPTVRKFVVERLEKLRAN-------GGGDIVTELFKPLPSMVVAH-YLGVPEE 168 (414)
T ss_dssp CCTTHHHHHHHHH-HTTSSHHHHHHHHHHHHHHHHHHHHHHHHT-------TEEEHHHHTTTHHHHHHHHH-HTTCCGG
T ss_pred CCchhHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHHHhc-------CCccHHHHHHHHhHHHHHHH-HhCCCHH
Confidence 4699999999999 999999999999999999999999999752 369997 5568999999999 6998875
No 57
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.62 E-value=4.9e-15 Score=124.08 Aligned_cols=135 Identities=14% Similarity=0.095 Sum_probs=106.5
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeC--CccEEEeccHHHHHHHHHhccccccCCCCc--------c-cccc----c-ccCC
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFG--NSPSLVVSSAEVASEMMKTHDIAFSNRPRS--------I-ATKI----L-LYDG 125 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~--~~~~v~v~~p~~i~~il~~~~~~~~~~~~~--------~-~~~~----~-~~~~ 125 (265)
..+++.++.++++ ||||+++++| +.+.++++||+.+++|+.++ .|++++.. . .... . ...+
T Consensus 19 ~~~p~~~~~~l~~-~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (425)
T 2z3t_A 19 IADPYPVYRRYRE-AAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVE 95 (425)
T ss_dssp HHCCHHHHHHHHH-HCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHT
T ss_pred hcChHHHHHHHHh-cCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccccccccc
Confidence 4678889999865 9999999987 78899999999999999764 67766431 0 0000 0 0113
Q ss_pred ceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhc
Q 047737 126 KDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIF 204 (265)
Q Consensus 126 ~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~f 204 (265)
.++++ .+|+.|+++|+++ +++|++++++.+.+.+.++++++++.|.+. | ++|+.+.+ ..+++|+++.+ |
T Consensus 96 ~~l~~-~dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~~------g-~~dl~~~~~~~~~~~vi~~~-~ 165 (425)
T 2z3t_A 96 NWLVF-LDPPHHTELRSLL-TTEFSPSIVTGLRPRIAELASALLDRLRAQ------R-RPDLVEGFAAPLPILVISAL-L 165 (425)
T ss_dssp TCGGG-CCHHHHHHHHHHH-HGGGSHHHHHHHHHHHHHHHHHHHHHHTTS------S-SCBHHHHTTTHHHHHHHHHH-H
T ss_pred ccccc-CCchHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHHHHhc------C-CccHHHHHHHHHHHHHHHHH-h
Confidence 55544 4699999999999 999999999999999999999999999642 3 79998754 78999999998 9
Q ss_pred ccccc
Q 047737 205 GRKVE 209 (265)
Q Consensus 205 G~~~~ 209 (265)
|.+.+
T Consensus 166 G~~~~ 170 (425)
T 2z3t_A 166 GIPEE 170 (425)
T ss_dssp TCCGG
T ss_pred CCCHH
Confidence 98775
No 58
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.61 E-value=3.9e-15 Score=124.20 Aligned_cols=136 Identities=15% Similarity=0.204 Sum_probs=106.5
Q ss_pred CCCchhHHHHHHhhcCCeEEEEe-CCccEEEeccHHHHHHHHHhccccccCCC-Cccccc--cccc--------C-Ccee
Q 047737 62 QNVPHRSLKALSDRYGPIILVYF-GNSPSLVVSSAEVASEMMKTHDIAFSNRP-RSIATK--ILLY--------D-GKDL 128 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~-~~~~~~--~~~~--------~-~~~~ 128 (265)
..+++..+.++ ++||||+++++ ++.+.++++||+++++++.++. +++++ ...... .... . +.+
T Consensus 16 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 91 (411)
T 1gwi_A 16 VTDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGRS- 91 (411)
T ss_dssp CSCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCSS-
T ss_pred cCChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhccccc-
Confidence 67889999999 99999999998 8889999999999999997643 33332 011000 0000 1 234
Q ss_pred EecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHH-HHHHHHhhHHhcccc
Q 047737 129 GFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMIL-AVSNNIATRCIFGRK 207 (265)
Q Consensus 129 ~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~ 207 (265)
++..+|+.|+++|+++ +++|++++++.+.+.+.++++++++.|.+ +++++|+.+.+. .+++|+++. +||.+
T Consensus 92 l~~~~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~------~~~~~d~~~~~~~~~~~~vi~~-~~G~~ 163 (411)
T 1gwi_A 92 MLTVDGAEHRRLRTLV-AQALTVRRVEHMRGRITELTDRLLDELPA------DGGVVDLKAAFAYPLPMYVVAD-LMGIE 163 (411)
T ss_dssp GGGCCHHHHHHHHHHH-TTTSCHHHHHTTHHHHHHHHHHHHHTSCC------SCCCEEHHHHTTTHHHHHHHHH-HHTCC
T ss_pred cccCCcHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHH------cCCCcchHHHHhhHHHHHHHHH-HhCCC
Confidence 3556799999999999 99999999999999999999999998851 356899998886 599999996 79987
Q ss_pred cc
Q 047737 208 VE 209 (265)
Q Consensus 208 ~~ 209 (265)
.+
T Consensus 164 ~~ 165 (411)
T 1gwi_A 164 EA 165 (411)
T ss_dssp GG
T ss_pred HH
Confidence 64
No 59
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.61 E-value=3.2e-15 Score=124.21 Aligned_cols=144 Identities=10% Similarity=0.061 Sum_probs=110.5
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcccccccccCCceeEecCCChhHHHHH
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLW 141 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R 141 (265)
..+++..+.++++ ||||+++. .+.++++||+++++++.++. .|++++... .... .+.++ ...+|+.|+++|
T Consensus 17 ~~~p~~~~~~l~~-~Gpv~~~~---~~~vvv~~~~~v~~vl~~~~-~f~~~~~~~-~~~~--~~~~l-~~~~g~~h~~~R 87 (398)
T 2xkr_A 17 SREARAAYRWMRA-NQPVFRDR---NGLAAASTYQAVIDAERQPE-LFSNAGGIR-PDQP--ALPMM-IDMDDPAHLLRR 87 (398)
T ss_dssp CTTHHHHHHHHHH-HCSEEECT---TCCEEECSHHHHHHHHTCTT-TEESTTCSS-TTSC--CCSSG-GGCCTTHHHHHH
T ss_pred ccChhHHHHHHHh-cCCeeecC---CCeEEEecHHHHHHHHhCcc-cccCccccC-Cccc--ccccc-cccCchHHHHHH
Confidence 3678889999987 99999763 38999999999999997643 677665322 1112 14454 445699999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHH-HHHHHHHHHHhhHHhccccccchhhcCCcchh
Q 047737 142 KICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLS-EMILAVSNNIATRCIFGRKVEDLEEENGSGES 220 (265)
Q Consensus 142 ~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~-~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~ 220 (265)
+++ +++|++++++.+.+.+.++++++++.|.+ ++++|+. +.+..+++|+|+.+ ||.+.+ +.+
T Consensus 88 ~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~~~~d~~~~~~~~~~~~vi~~~-fG~~~~--------~~~ 150 (398)
T 2xkr_A 88 KLV-NAGFTRKRVKDKEASIAALCDTLIDAVCE-------RGECDFVRDLAAPLPMAVIGDM-LGVRPE--------QRD 150 (398)
T ss_dssp HHH-GGGSCHHHHHTTHHHHHHHHHHHHHTTTT-------TSEEEHHHHTTTHHHHHHHHHH-HTCCGG--------GHH
T ss_pred HHh-hhhhCHHHHHHHHHHHHHHHHHHHHhhhh-------cCCccHHHHHHHHHHHHHHHHH-hCCCHH--------HHH
Confidence 999 99999999999999999999999998853 2479999 45568999999998 999875 224
Q ss_pred HHHHHHHHHHH
Q 047737 221 KFGELTKKNMI 231 (265)
Q Consensus 221 ~~~~~~~~~~~ 231 (265)
++.+..+.+..
T Consensus 151 ~~~~~~~~~~~ 161 (398)
T 2xkr_A 151 MFLRWSDDLVT 161 (398)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 60
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.58 E-value=3.7e-15 Score=124.42 Aligned_cols=137 Identities=15% Similarity=0.117 Sum_probs=105.5
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeCC--ccEEEeccHHHHHHHHHhccccccCCCCcccccccc--cCC-ceeEecCCChh
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFGN--SPSLVVSSAEVASEMMKTHDIAFSNRPRSIATKILL--YDG-KDLGFAEYGEY 136 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~~--~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~g~~ 136 (265)
..+++..+.++++ ||||+++...| .+.+++++|+++++++.+ ...|++++......... ... .+.++..+|+.
T Consensus 36 ~~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~~-~~~fs~~~~~~~~~~~~~~~~~~~~~l~~~dg~~ 113 (415)
T 3mgx_A 36 TLERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLAP-SAPLTSEYGMMIGFDRDHPDNSGGRMMVVSEHEQ 113 (415)
T ss_dssp STTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSCT-TSSEECTTCSSTTCCSSSCCTTTTTSGGGCCHHH
T ss_pred cCChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHhC-hhhhcCCccccccccccccccccCCCccccCcHH
Confidence 3578999999987 89999997445 789999999999999954 44576655432221110 001 23345667999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhcccccc
Q 047737 137 WRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 137 w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~ 209 (265)
|+++|+++ +++|++++++.+.+.+.++++++++.|.+ ++++|+.+.+ ..+++++|+. +||.+.+
T Consensus 114 h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~-------~~~~dl~~~~~~~~~~~vi~~-l~G~~~~ 178 (415)
T 3mgx_A 114 HRKLRKLV-GPLLSRAAARKLAERVRIEVGDVLGRVLD-------GEVCDAATAIGPRIPAAVVCE-ILGVPAE 178 (415)
T ss_dssp HHHHHHHH-GGGSSHHHHHHSHHHHHHHHHHHTTTSSS-------SSCEESTTTTTTHHHHHHHHH-HHTCCGG
T ss_pred HHHHHHHh-HhhhCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCcchHHHHHHHHHHHHHHH-HcCCCHH
Confidence 99999999 99999999999999999999999988753 2479998877 6799999998 5886653
No 61
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.58 E-value=2.6e-15 Score=126.31 Aligned_cols=149 Identities=11% Similarity=0.094 Sum_probs=103.0
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcccccccccCCceeEecCCChhHHHHH
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLW 141 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R 141 (265)
..+++.++.++ ++||||+++..++ .+++++|+++++|+.++. .|++++......... +.+.++..+|+.|+++|
T Consensus 52 ~~~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~--~~~~l~~~dg~~h~~~R 125 (441)
T 3nc3_A 52 QNNPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPD-IFTTKSLVERAEPVM--RGPVLAQMHGKEHSAKR 125 (441)
T ss_dssp HHCGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTT-TEECCCTTSCCCCSC--C-------------CCH
T ss_pred hcChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCcc-ccccccccccccccc--CCCccccCCcHHHHHHH
Confidence 46788888776 5899999987655 899999999999997764 376665433322222 44445566699999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHH-HHHHHHHHHHhhHHhccccccchhhcCCcchh
Q 047737 142 KICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLS-EMILAVSNNIATRCIFGRKVEDLEEENGSGES 220 (265)
Q Consensus 142 ~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~-~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~ 220 (265)
+++ +++|+++.++.+.+.+.++++++++.|.+ ++.+|+. +....+++++++. +||.+.+ +.+
T Consensus 126 r~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~-------~~~~dl~~~~~~~~~~~vi~~-l~G~~~~--------~~~ 188 (441)
T 3nc3_A 126 RIV-VRSFIGDALDHLSPLIKQNAENLLAPYLE-------RGKSDLVNDFGKTFAVCVTMD-MLGLDKR--------DHE 188 (441)
T ss_dssp HHH-HHHHHHTHHHHHHHHHHHHHHHHHTTTTT-------TTEEECCCCCHHHHHHHHHHH-HTTCCGG--------GHH
T ss_pred HHH-HhhcCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHHHH-HcCCCHH--------HHH
Confidence 999 99999999999999999999999988853 3578875 4556799999999 5898764 234
Q ss_pred HHHHHHHHHHHHh
Q 047737 221 KFGELTKKNMILL 233 (265)
Q Consensus 221 ~~~~~~~~~~~~~ 233 (265)
++.+..+.+....
T Consensus 189 ~~~~~~~~~~~~~ 201 (441)
T 3nc3_A 189 KISEWHSGVADFI 201 (441)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 5555555555443
No 62
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.58 E-value=2.9e-15 Score=125.30 Aligned_cols=148 Identities=12% Similarity=0.118 Sum_probs=112.5
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCC-----cc-c--ccccccC-CceeEecC
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPR-----SI-A--TKILLYD-GKDLGFAE 132 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~-----~~-~--~~~~~~~-~~~~~~~~ 132 (265)
..+++..+.++ ++||||++ + ++.+.++++||+++++++.++. |++++. .. . ....... +.++ ...
T Consensus 25 ~~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 98 (419)
T 1q5d_A 25 AEDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYGL-FGL 98 (419)
T ss_dssp TTCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHST-TTS
T ss_pred hhChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhccccc-ccC
Confidence 56889999998 78999999 5 7789999999999999997653 776651 11 0 1111100 2333 445
Q ss_pred CChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHH-HHHHHHHHhhHHhccccccch
Q 047737 133 YGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEM-ILAVSNNIATRCIFGRKVEDL 211 (265)
Q Consensus 133 ~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~-~~~~t~~vi~~~~fG~~~~~~ 211 (265)
+|+.|+++|+++ +++|++++++.+.+.+.++++++++.|.+ ++++|+.+. +..+++|+|+.+ ||.+.+
T Consensus 99 ~g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~~-------~~~~d~~~~~~~~~~~~vi~~~-fG~~~~-- 167 (419)
T 1q5d_A 99 PPEDHARVRKLV-NPSFTSRAIDLLRAEIQRTVDQLLDARSG-------QEEFDVVRDYAEGIPMRAISAL-LKVPAE-- 167 (419)
T ss_dssp CHHHHHHHHHHH-GGGGSHHHHGGGHHHHHHHHHHHHHHHTT-------SSCEETTTTTGGGSHHHHHHHH-TTCCGG--
T ss_pred CchHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHH-hCCCHH--
Confidence 699999999999 99999999999999999999999999963 237998864 589999999998 998775
Q ss_pred hhcCCcchhHHHHHHHHHHHH
Q 047737 212 EEENGSGESKFGELTKKNMIL 232 (265)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~ 232 (265)
+.+++.+..+.+...
T Consensus 168 ------~~~~~~~~~~~~~~~ 182 (419)
T 1q5d_A 168 ------CDEKFRRFGSATARA 182 (419)
T ss_dssp ------GHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHh
Confidence 224555555555543
No 63
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.58 E-value=1.2e-14 Score=120.76 Aligned_cols=133 Identities=16% Similarity=0.165 Sum_probs=98.6
Q ss_pred hhHHHHHHhhcCCeEEEEeC-Cc---cEEEeccHHHHHHHHHhccccccCCCCc------cccccc--ccCCceeEecCC
Q 047737 66 HRSLKALSDRYGPIILVYFG-NS---PSLVVSSAEVASEMMKTHDIAFSNRPRS------IATKIL--LYDGKDLGFAEY 133 (265)
Q Consensus 66 ~~~~~~~~~~yG~i~~~~~~-~~---~~v~v~~p~~i~~il~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~ 133 (265)
+..+.+++++ |||+++.++ |. +.++++||+++++++.++. .|++++.. ...... ...+.+++. .+
T Consensus 16 ~~~~~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 92 (398)
T 1lfk_A 16 LDPADELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDHQ-QFSTRRRWDPRDEIGGKGIFRPRELVGNLMD-YD 92 (398)
T ss_dssp TEECHHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCTT-TEEECTTCCC-------------CCTTCGGG-CC
T ss_pred CChhHHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhCc-ccccccccccccccCCcccccccccccCccc-cC
Confidence 3345567777 999999875 55 8999999999999994332 46555431 101100 111445444 56
Q ss_pred ChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHH-HHHHHhhHHhcccccc
Q 047737 134 GEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILA-VSNNIATRCIFGRKVE 209 (265)
Q Consensus 134 g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~-~t~~vi~~~~fG~~~~ 209 (265)
|+.|+++|+++ ++.|++++++.+.+.+.++++++++.|.+. |+++|+.+.+.. +++++++. +||.+.+
T Consensus 93 g~~~~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~------~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 161 (398)
T 1lfk_A 93 PPEHTRLRRKL-TPGFTLRKMQRMAPYIEQIVNDRLDEMERA------GSPADLIAFVADKVPGAVLCE-LVGVPRD 161 (398)
T ss_dssp TTHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHHHHHH------CSSEEHHHHTTTTHHHHHHHH-HHTCCGG
T ss_pred CHHHHHHHHHH-HhhhCHHHHHHHHHHHHHHHHHHHHHHHhc------CCCccHHHHHHHHHHHHHHHH-HcCCCHH
Confidence 99999999999 999999999999999999999999999753 568999999987 99999998 5898775
No 64
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.55 E-value=2.7e-14 Score=118.56 Aligned_cols=135 Identities=10% Similarity=0.076 Sum_probs=104.6
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcccccccccCCceeEecCCChhHHHHH
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLW 141 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R 141 (265)
..+++..+.+++++ |||+++..++ +.++++||+.+++++.+. ..|++++.......... +...++..+|+.|+++|
T Consensus 23 ~~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~-~~~~~~~~~g~~h~~~R 98 (396)
T 3oft_A 23 EQDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGDA-ERLSSQCLAVTPGLGKV-MQFIPLQQDGAEHKAFR 98 (396)
T ss_dssp TTCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHCT-TTEESTTCCSSTTHHHH-HCCTTTTCCHHHHHHHH
T ss_pred hcChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcCc-ccccCCcccCCCccccc-cccCccccCCcHHHHHH
Confidence 57899999999999 9999998874 589999999999999654 56776653221111111 12234556799999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhcccccc
Q 047737 142 KICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 142 ~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~ 209 (265)
+++ +++|++++++.+.+.+.++++++++.|.+. +.+|+...+ ..++.++++. +||.+.+
T Consensus 99 ~~~-~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~-------~~~d~~~~~~~~~~~~v~~~-~~G~~~~ 158 (396)
T 3oft_A 99 TPV-MKGLASRFVVALEPKVQAVARKLMESLRPR-------GSCDFVSDFAEILPLNIFLT-LIDVPLE 158 (396)
T ss_dssp HHH-HHHTCHHHHHHHHHHHHHHHHHHHHHHGGG-------SEEEHHHHTTTTHHHHHHHH-HTTCCGG
T ss_pred HHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhhhc-------CCccHHHHHHHHHHHHHHHH-HcCCCHH
Confidence 999 999999999999999999999999999753 468886655 6678887776 6887654
No 65
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.55 E-value=3e-14 Score=119.16 Aligned_cols=136 Identities=10% Similarity=0.024 Sum_probs=103.6
Q ss_pred CCCchhHHHHHHhhcC-CeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcccccccccCCceeEecCCChhHHHH
Q 047737 62 QNVPHRSLKALSDRYG-PIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQL 140 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~ 140 (265)
..+++.++.++++++| ||+++..++ +.++++||+.+++|+. +...|++++...........+.+ ++..+|+.|+++
T Consensus 37 ~~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~~~~~~~-~~~~dg~~h~~~ 113 (421)
T 3lxh_A 37 EQGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIYR-SPERFSSRVIWVPREAGEAYDMV-PTKLDPPEHTPY 113 (421)
T ss_dssp GGCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHHT-CTTTEETTCCSSSHHHHHHCCCT-TTTCCTTTHHHH
T ss_pred hcChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHHc-ChhhccCCcccCCcccccccccC-CccCCcHHHHHH
Confidence 4688999999988766 899998766 5899999999999994 44577766532211111111233 455669999999
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhcccccc
Q 047737 141 WKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 141 R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~ 209 (265)
|+++ +++|++++++.+.+.+.++++++++.|.+ ++.+|+...+ ..++.++++. +||.+.+
T Consensus 114 R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~~~~d~~~~~~~~~~~~v~~~-~~G~~~~ 174 (421)
T 3lxh_A 114 RKAI-DKGLNLAEIRKLEDQIRTIAVEIIEGFAD-------RGHCEFGSEFSTVFPVRVFLA-LAGLPVE 174 (421)
T ss_dssp HHHH-HHHHSHHHHHTTHHHHHHHHHHHHHTTTT-------TSEEEHHHHTTTTHHHHHHHH-HHTCCGG
T ss_pred HHHH-hhhcCHHHHHHHHHHHHHHHHHHHHHHhh-------cCCeehHHHHHHHHHHHHHHH-HcCCCHH
Confidence 9999 99999999999999999999999998853 3478876555 6688888876 5887664
No 66
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.54 E-value=8.8e-15 Score=121.47 Aligned_cols=132 Identities=14% Similarity=0.186 Sum_probs=104.0
Q ss_pred CCCchhHHHHHHhhcCCeEEEEe-CCccEEEeccHHHHHHHHHhcccccc-C-CCCc--cccc--cccc-CCceeEecCC
Q 047737 62 QNVPHRSLKALSDRYGPIILVYF-GNSPSLVVSSAEVASEMMKTHDIAFS-N-RPRS--IATK--ILLY-DGKDLGFAEY 133 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~-~-~~~~--~~~~--~~~~-~~~~~~~~~~ 133 (265)
..+++..+.++ ++||||+++++ ++.+.++++||+++++++.++ .|. + ++.. .... .... .+.++++.
T Consensus 15 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 89 (396)
T 1n40_A 15 GDRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGNI-- 89 (396)
T ss_dssp SSSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHHH--
T ss_pred ccCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhhH--
Confidence 57899999999 99999999998 788999999999999999764 354 3 3221 1110 0110 13444433
Q ss_pred ChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhcccccc
Q 047737 134 GEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 134 g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~ 209 (265)
.|+++|+.+ ++.|+++ ++.+.+.+.++++++++.|.+. ++++|+.+.+ ..+++|+++. +||.+.+
T Consensus 90 --~h~~~R~~~-~~~fs~~-~~~~~~~i~~~~~~l~~~l~~~------~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 155 (396)
T 1n40_A 90 --ADAGLRKAV-MKAITPK-APGLEQFLRDTANSLLDNLITE------GAPADLRNDFADPLATALHCK-VLGIPQE 155 (396)
T ss_dssp --HHTTCHHHH-HHHTSSC-STTHHHHHHHHHHHHHHHHHHH------CSCEETTTTTHHHHHHHHHHH-HHTCCGG
T ss_pred --HHHHHHHHH-HHhhChH-HHHhHHHHHHHHHHHHHHHHhc------CCCccHHHHHHHHhHHHHHHH-HhCCChh
Confidence 999999999 9999999 9999999999999999999752 4689998665 5899999999 8998775
No 67
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.52 E-value=5.2e-14 Score=117.61 Aligned_cols=132 Identities=17% Similarity=0.173 Sum_probs=101.2
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcccccccc--------cCCceeEecCC
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATKILL--------YDGKDLGFAEY 133 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 133 (265)
..+++.++.++ ++||||+++..| .+++++|+++++++.+. ..+++++......... ..+.+ +...+
T Consensus 28 ~~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~d 101 (418)
T 3r9b_A 28 RADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHP-SSCSDRTKSTIFQRQLAAETQPRPQGPAS-FLFLD 101 (418)
T ss_dssp TTCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCT-TEECCGGGCHHHHHHHC---------CCC-GGGCC
T ss_pred ccCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCc-ccccCcccccccccccccccccccccccc-hhhcC
Confidence 67899999988 578999998665 99999999999999653 3344443222111111 11334 44556
Q ss_pred ChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhcccccc
Q 047737 134 GEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 134 g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~ 209 (265)
|+.|+++|+++ +++|++++++.+.+.+.++++++++ +.+ ++++|+.+.+ ..+++++++. +||.+.+
T Consensus 102 g~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~-l~~-------~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 168 (418)
T 3r9b_A 102 PPDHTRLRGLV-SKAFAPRVIKRLEPEITALVDQLLD-AVD-------GPEFNLIDNLAYPLPVAVICR-LLGVPIE 168 (418)
T ss_dssp TTHHHHHHHHH-HGGGSHHHHGGGHHHHHHHHHHHHH-TCC-------SSEEEHHHHTTTHHHHHHHHH-HHTCCGG
T ss_pred CchHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHh-hhc-------cCCeehHHHHhCcCCHHHHHH-HcCCCHH
Confidence 99999999999 9999999999999999999999999 742 3489986555 6899999999 8998875
No 68
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.51 E-value=2.2e-14 Score=119.12 Aligned_cols=132 Identities=11% Similarity=0.036 Sum_probs=101.8
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcccc------cccccC-CceeEecCCC
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIAT------KILLYD-GKDLGFAEYG 134 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~g 134 (265)
..+++..+.++ ++||||++ + |.+.++++||+++++++.+ ..|++++..... ...... +.++ ...+|
T Consensus 12 ~~~p~~~~~~l-~~yGpv~~-~--g~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g 84 (397)
T 3buj_A 12 RRDPYPSYHWL-LRHDPVHR-G--AHRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDII-LFQDE 84 (397)
T ss_dssp HHCCHHHHHHH-HHHCSEEE-C--GGGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTCG-GGCCT
T ss_pred ccCchHHHHHH-HhcCCeee-C--CCCeEEEcCHHHHHHHHcC--CCcccCccccccccccccccccccccccc-ccCCc
Confidence 35778888777 58999998 6 5789999999999999975 345544221100 011100 3454 44569
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHH-HHHHHHHHhhHHhcccccc
Q 047737 135 EYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEM-ILAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 135 ~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~-~~~~t~~vi~~~~fG~~~~ 209 (265)
+.|+++|+++ +++|++++++.+.+.+.++++++++.|.+ ++++|+.+. ...+++|+++.+ ||.+.+
T Consensus 85 ~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~-------~~~~dl~~~~~~~~~~~vi~~~-~G~~~~ 151 (397)
T 3buj_A 85 PDHGRLRGVV-GPAFSPSALRRLEPVIAGTVDDLLRPALA-------RGAMDVVDELAYPLALRAVLGL-LGLPAA 151 (397)
T ss_dssp THHHHHHHHH-GGGSSTTTTGGGHHHHHHHHHHHHHHHHT-------TTEEEHHHHTHHHHHHHHHHHH-HTCCGG
T ss_pred hhHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHhh-------cCCeehHHHHHHHhHHHHHHHH-hCCCHH
Confidence 9999999999 99999999999999999999999999974 248998755 578999999998 998875
No 69
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.49 E-value=4.4e-14 Score=116.10 Aligned_cols=128 Identities=11% Similarity=0.161 Sum_probs=99.6
Q ss_pred chhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCC-----cccc--cc--ccc-CCceeEecCCC
Q 047737 65 PHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPR-----SIAT--KI--LLY-DGKDLGFAEYG 134 (265)
Q Consensus 65 ~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~-----~~~~--~~--~~~-~~~~~~~~~~g 134 (265)
++..+.++ ++||||+++ | +.++++||+++++++.+. ..|++++. .... .. ... .|.++ ...+|
T Consensus 1 p~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~g 73 (368)
T 1io7_A 1 MYDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNF-SKFSSDLTGYHERLEDLRNGKIRFDIPTRYTM-LTSDP 73 (368)
T ss_dssp CHHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCT-TTEECCCSSHHHHHHHHTTTCCCCSCGGGSSG-GGCCT
T ss_pred CCHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCc-cccccccccccccccccccccccccccccccc-ccCCC
Confidence 35667777 589999987 4 589999999999999864 46777653 1100 01 110 12444 44569
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhcccccc
Q 047737 135 EYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 135 ~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~ 209 (265)
+.|+++|+++ +++|++++++.+.+.+.++++++++.| +. +++|+.+.+ ..+++|+++.+ ||.+.+
T Consensus 74 ~~h~~~R~~~-~~~f~~~~~~~~~~~i~~~~~~l~~~l-~~-------g~~d~~~~~~~~~~~~vi~~~-~G~~~~ 139 (368)
T 1io7_A 74 PLHDELRSMS-ADIFSPQKLQTLETFIRETTRSLLDSI-DP-------REDDIVKKLAVPLPIIVISKI-LGLPIE 139 (368)
T ss_dssp THHHHHHGGG-TTTTCHHHHHHHHHHHHHHHHHHHHTC-CT-------TSEEHHHHTTTHHHHHHHHHH-HTCCGG
T ss_pred hHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHh-hc-------CCccHHHHHHHHHHHHHHHHH-hCCCHH
Confidence 9999999999 999999999999999999999999998 42 379999876 78999999999 998775
No 70
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.49 E-value=3.3e-13 Score=113.04 Aligned_cols=137 Identities=12% Similarity=0.056 Sum_probs=103.9
Q ss_pred CCCchhHHHHHHhhcCCeEEEEe-CCccEEEeccHHHHHHHHHhccccccCCCC---ccccc-----ccccCCceeEecC
Q 047737 62 QNVPHRSLKALSDRYGPIILVYF-GNSPSLVVSSAEVASEMMKTHDIAFSNRPR---SIATK-----ILLYDGKDLGFAE 132 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~ 132 (265)
..+++..+.+++++ |||+++.. ++.+.++|++++.+++++.+. ..|+++.. ..... .....+.+.+...
T Consensus 37 ~~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 114 (426)
T 3rwl_A 37 NDSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDLPNFIAM 114 (426)
T ss_dssp TTCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCCCCGGGC
T ss_pred cCCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccccCccccc
Confidence 45689999999887 99999987 556799999999999999764 34554331 11111 0000122334566
Q ss_pred CChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhcccccc
Q 047737 133 YGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 133 ~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~ 209 (265)
+|+.|+++|+++ ++.|++++++.+.+.+.+.++++++.|. +++++|+.+.+ ..+++++++. +||.+.+
T Consensus 115 dg~~h~~~R~~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l~-------~~~~~dl~~~~~~~~~~~vi~~-l~G~~~~ 183 (426)
T 3rwl_A 115 DRPRHDEQRKAV-SPIVAPANLAALEGTIRERVSKTLDGLP-------VGEEFDWVDRVSIEITTQMLAT-LFDFPFE 183 (426)
T ss_dssp CTTHHHHHHHHH-GGGGCHHHHHHHHHHHHHHHHHHHHTSC-------SSSCEEHHHHTHHHHHHHHHHH-HHTCCGG
T ss_pred CchHHHHHHHHh-hhhhCHHHHHHHHHHHHHHHHHHHHHhh-------cCCCcchHHHHHHHHHHHHHHH-HcCCCHH
Confidence 799999999999 9999999999999999999999999873 25689987766 6899999886 8997654
No 71
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.46 E-value=2.5e-13 Score=110.56 Aligned_cols=114 Identities=12% Similarity=0.135 Sum_probs=90.4
Q ss_pred hhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcccccccccCCceeEecCCChhHHHHHHHHHHHhcChHH
Q 047737 74 DRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKR 153 (265)
Q Consensus 74 ~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~ 153 (265)
++||||+++ | .++++||+++++++.++ ..|++++....... .+.+++ ..+|+.|+++|+++ +++|++++
T Consensus 2 r~~gpv~~~---g--~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~---~~~~l~-~~~g~~~~~~R~~~-~~~fs~~~ 70 (343)
T 2rfb_A 2 RLNDPVHYD---G--AWHVYKYSDVKHVLMND-KIFSSNPGNRYSNA---GGISFI-TMDNPEHKEFRDIS-APYFLPSK 70 (343)
T ss_dssp -CCCCEEET---T--EEEECSHHHHHHHHHCT-TTEESSCSSCCC------CCGGG-GCCHHHHHHHHHHH-HHHHSHHH
T ss_pred CCcCCeeee---C--eEEEcCHHHHHHHHhCh-hhcccCCcCCCCCc---cccccc-cCCchHHHHHHHHh-hhhcCHHH
Confidence 579999986 3 89999999999999875 36776652111111 245554 45699999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhcccccc
Q 047737 154 VKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 154 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~ 209 (265)
++.+.+.+.++++++++.|. ++|+.+.+ ..+++|+++.+ ||.+.+
T Consensus 71 l~~~~~~i~~~~~~l~~~l~----------~~d~~~~~~~~~~~~vi~~~-~G~~~~ 116 (343)
T 2rfb_A 71 INDYKDFIEETSNDLIKNID----------NKDIISEYAVRLPVNIISKI-LGIPDS 116 (343)
T ss_dssp HGGGHHHHHHHHHHHHTTCT----------TSCHHHHTTTHHHHHHHHHH-HTCCGG
T ss_pred HHHHHHHHHHHHHHHHHhcc----------ccCHHHHHhhhhhHHHHHHH-cCCCHH
Confidence 99999999999999987652 68998865 89999999998 998765
No 72
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.41 E-value=5.2e-13 Score=109.68 Aligned_cols=124 Identities=9% Similarity=0.085 Sum_probs=94.1
Q ss_pred chhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCC-cc-cc-----c-ccccC--CceeEecCCC
Q 047737 65 PHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPR-SI-AT-----K-ILLYD--GKDLGFAEYG 134 (265)
Q Consensus 65 ~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~-~~-~~-----~-~~~~~--~~~~~~~~~g 134 (265)
++..+.+++ +||||+++. | .+++++|+.+++++.++ ..|++++. .. .. . ..... +.+++ ..+|
T Consensus 1 p~~~~~~lr-~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~dg 73 (367)
T 3b4x_A 1 MYDWFKQMR-KESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTML-TSDP 73 (367)
T ss_dssp CHHHHHHHH-HHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCCCCGGGSSGG-GCCT
T ss_pred CCHHHHHHH-HcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccchhhcccccccc-cCCc
Confidence 355677774 799999987 3 89999999999999865 36766632 11 11 1 12110 14544 4569
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhcccccc
Q 047737 135 EYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 135 ~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~ 209 (265)
+.|+++|+++ +++|++++++. +.+.++++++++.|. | .+|+.+.+ ..+++|+|+. +||.+ +
T Consensus 74 ~~h~~~R~~~-~~~fs~~~l~~--~~i~~~~~~l~~~l~--------g-~~d~~~~~~~~~~~~vi~~-~~G~~-~ 135 (367)
T 3b4x_A 74 PLHDELRNLT-ADAFNPSNLPV--DFVREVTVKLLSELD--------E-EFDVIESFAIPLPILVISK-MLGIN-P 135 (367)
T ss_dssp THHHHHHHTT-GGGGSGGGSCH--HHHHHHHHHHHHTCC--------S-EEEHHHHTTTHHHHHHHHH-HHTCC-C
T ss_pred hhHHHHHHHH-HHhcCHhhhcc--hHHHHHHHHHHHhcc--------C-CcchHHHHHHhhHHHHHHH-HcCCC-C
Confidence 9999999999 99999999988 899999999888762 3 49999765 8999999999 79988 6
No 73
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.37 E-value=9.4e-13 Score=109.16 Aligned_cols=133 Identities=15% Similarity=0.123 Sum_probs=101.3
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcccccccccCCceeEecCCChhHHHHH
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQLW 141 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R 141 (265)
..+++..+.+++++ |||+++..| .+++++++.+++++.+. .|+.++...........+++ ++..+|+.|+++|
T Consensus 19 ~~dp~~~~~~lr~~-~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~~~~~~~~~~~~~~~~~-l~~~dg~~h~~~R 91 (394)
T 2wiy_A 19 RNNPYPWYRRLQQD-HPVHKLEDG---TYLVSRYADVSHFAKLP--IMSVEPGWADAGPWAVASDT-ALGSDPPHHTVLR 91 (394)
T ss_dssp HHCCHHHHHHHHHH-CSEEECTTS---CEEECCHHHHHHHTTST--TEECHHHHHTCGGGGGGGGS-GGGCCTTHHHHHH
T ss_pred ccCccHHHHHHHhc-CCeEEecCC---eEEEcCHHHHHHHHcCC--Cccccccccccccchhcccc-cccCCchHHHHHH
Confidence 35788889888765 899987543 68999999999999643 34432211111111111233 4566799999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHHHHHHHHHhhHHhcccccc
Q 047737 142 KICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMILAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 142 ~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~ 209 (265)
+++ ++.|++++++.+.+.+.+.++++++.|. .++++|+.+.+..+++++++..+||.+.+
T Consensus 92 ~~~-~~~fs~~~~~~~~~~i~~~~~~l~~~~~-------~~~~~d~~~~~~~~~~~vi~~~~~G~~~~ 151 (394)
T 2wiy_A 92 RQT-NKWFTPKLVDGWVRTTRELVGDLLDGVE-------AGQVIEARRDLAVVPTHVTMARVLQLPED 151 (394)
T ss_dssp HHH-HTTCSHHHHHHHTHHHHHHHHHHHHTCC-------TTCCEEHHHHHTHHHHHHHHHHHHTCCCC
T ss_pred HHH-HhccCHHHHHHHHHHHHHHHHHHHHHHh-------ccCCeeHHHHHHhhhHHHHHHHHcCCCHh
Confidence 999 9999999999999999999999988774 25689999999999999999999998754
No 74
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.35 E-value=1.1e-11 Score=103.38 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=104.1
Q ss_pred CCCccccc---cccccCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCccc---ccccc
Q 047737 49 PRLPIIGN---LHQIVQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIA---TKILL 122 (265)
Q Consensus 49 ~~~p~~G~---~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~---~~~~~ 122 (265)
.++|.+|- -..+ ..+++..+.++++ +|||+++ ++...++|++++++++++.+. ..|++...... .....
T Consensus 18 ~~~P~~~~dp~~~~~-~~dP~~~~~~lR~-~gPV~~~--~~~~~~~vt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~ 92 (412)
T 4dnj_A 18 AGVPHLGIDPFALDY-FADPYPEQETLRE-AGPVVYL--DKWNVYGVARYAEVYAVLNDP-LTFCSSRGVGLSDFKKEKP 92 (412)
T ss_dssp TTSCEECCCTTSHHH-HHSCHHHHHHHHH-HCSSEEE--TTTTEEEECSHHHHHHHHTCT-TTEESTTCSSSSCTTTSCC
T ss_pred CCCCccCCCCCCHHH-HhCcHHHHHHHHh-cCCEEEE--CCCCEEEECCHHHHHHHHcCC-ccccCCCcccccccccccc
Confidence 35676652 1233 5689999988876 5999754 566789999999999999653 34443221111 11111
Q ss_pred cCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccH-HHHHHHHHHHHhhH
Q 047737 123 YDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINL-SEMILAVSNNIATR 201 (265)
Q Consensus 123 ~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~-~~~~~~~t~~vi~~ 201 (265)
....+.+...||++|+++|+++ +|+|++++++.+.+.+.+.++++++.+.+. ++.+|+ .+....+++++++.
T Consensus 93 ~~~~~~~~~~Dg~~H~r~R~~~-~~~Fs~~~l~~~~~~i~~~~~~l~~~~~~~------~~~~D~v~~~~~~~~~~~i~~ 165 (412)
T 4dnj_A 93 WRPPSLILEADPPAHTRTRAVL-SKVLSPATMKRLRDGFAAAADAKIDELLAR------GGNIDAIADLAEAYPLSVFPD 165 (412)
T ss_dssp SSCCCTTTTCCTTHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHHHHHT------TSEEETCCCCCCHHHHHHHHH
T ss_pred ccCCCccccCChHHHHHHHhhc-ccccCHHHHHHhhHHHHHHHHHHHHhhhcc------CCCceeHHHHHhhhhHhHHHH
Confidence 1133455667799999999999 999999999999999999999999999753 456665 46667788888888
Q ss_pred Hhcc
Q 047737 202 CIFG 205 (265)
Q Consensus 202 ~~fG 205 (265)
+...
T Consensus 166 l~g~ 169 (412)
T 4dnj_A 166 AMGL 169 (412)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 6543
No 75
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.30 E-value=7.5e-13 Score=110.54 Aligned_cols=135 Identities=13% Similarity=0.078 Sum_probs=97.1
Q ss_pred CCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCccccc----ccccCCceeEecCCChhH
Q 047737 62 QNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATK----ILLYDGKDLGFAEYGEYW 137 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~w 137 (265)
..+++.+ +..++|||++++..++.. +++++++++++|+.++...+..+....... .......+.++..+|+.|
T Consensus 32 ~~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h 108 (416)
T 3p3o_A 32 PNFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKRLISGFRGLVDMVGTPEGPVRDFMVDFLQSLDGADH 108 (416)
T ss_dssp TTCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTTEECSHHHHHHHHTCCSSHHHHHHHHSGGGCCHHHH
T ss_pred ccCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcccccCCccccccccccccchhhhhcCccccCCchHH
Confidence 4667777 455679999999987666 999999999999976532211110000000 000001123455679999
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhcccccc
Q 047737 138 RQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 138 ~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~ 209 (265)
+++|+++ +++|++++++.+.+.+.++++++++.| +. +.+|+...+ ..+++++|+. +||.+.+
T Consensus 109 ~~~Rr~~-~~~fs~~~l~~~~~~i~~~~~~ll~~l-~~-------g~~d~~~~~~~~~~~~vi~~-l~G~~~~ 171 (416)
T 3p3o_A 109 RRLRGLA-THPFTPRRITAVQPFVRSTVEQLIDKL-PQ-------GDFDFVQHFPHPLPALVMCQ-LLGFPLE 171 (416)
T ss_dssp HHHHHTT-CGGGSHHHHHHHHHHHHHHHHHHHHTC-CS-------SSEEHHHHTTTHHHHHHHHH-HHTCCGG
T ss_pred HHHHHHH-HHhhCHHHHHHHHHHHHHHHHHHHHhh-cc-------CCccHHHHHHHHHHHHHHHH-HhCCCHH
Confidence 9999999 999999999999999999999999988 42 358976554 5799999999 5887664
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=99.08 E-value=2.6e-09 Score=89.04 Aligned_cols=136 Identities=10% Similarity=0.043 Sum_probs=95.7
Q ss_pred CCCchhHHHHHHhhcC-CeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcccccccccCCceeEecCCChhHHHH
Q 047737 62 QNVPHRSLKALSDRYG-PIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSIATKILLYDGKDLGFAEYGEYWRQL 140 (265)
Q Consensus 62 ~~~~~~~~~~~~~~yG-~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~ 140 (265)
..+++..+.++++..+ +++....+| ..++|++.+.+++|+.+ ...|++........ ........+...||++|+++
T Consensus 36 ~~~~~~~~~~lr~~~~~~~~~~~~~g-g~W~vtr~~dv~~vl~d-~~~fs~~~~~~~~~-~~~~~~~~~~~~D~p~H~r~ 112 (417)
T 4dxy_A 36 EDGYHEAWKKVQHPGIPDLIWTPFTG-GHWIATNGDTVKEVYSD-PTRFSSEVIFLPKE-AGEKAQMVPTKMDPPEHTPY 112 (417)
T ss_dssp GGCHHHHHHHHSCTTCCSEEEESSTT-SEEEECSHHHHHHHHTC-TTTEESSCCSSSTT-SSCSSCTTTTTCCTTTHHHH
T ss_pred hcChHHHHHHHHhhCCCCEEecCCCC-CEEEECCHHHHHHHHcC-chhccCCCcccccc-cccccccCcccCCcHHHHHH
Confidence 4577888888877644 455443333 57889999999999964 34565443221111 11113344556679999999
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-HHHHHHHhhHHhcccccc
Q 047737 141 WKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI-LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 141 R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~ 209 (265)
|+++ +|+|++++++.+.+.+.+.++++++.+.+. +++|+...+ ..+++.+++. ++|...+
T Consensus 113 Rrll-~~~Fs~~~l~~~~~~i~~~~~~lld~l~~~-------g~~D~v~~~a~~l~~~vi~~-llg~~~~ 173 (417)
T 4dxy_A 113 RKAL-DKGLNLAKIRKVEDKVREVASSLIDSFAAR-------GECDFAAEYAELFPVHVFMA-LADLPLE 173 (417)
T ss_dssp HHHH-HHHHCHHHHHTTHHHHHHHHHHHHHHHHTT-------SEEEHHHHTTTTHHHHHHHH-HTTCCGG
T ss_pred HHHh-hhhcCHHHHHHHHHHHHHHHHHHHHHhhhc-------CCeeeHHHHHhhhHHHHHHH-HcCCCHH
Confidence 9999 999999999999999999999999999752 577875554 5566777665 5676543
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.06 E-value=4.9e-09 Score=86.00 Aligned_cols=134 Identities=11% Similarity=0.065 Sum_probs=83.6
Q ss_pred CCCC-CCCCccccccccc----cCCCchhHHHHHHhhcCCeEEEEeCCccEEEeccHHHHHHHHHhccccccCCCCcc--
Q 047737 44 LPPS-PPRLPIIGNLHQI----VQNVPHRSLKALSDRYGPIILVYFGNSPSLVVSSAEVASEMMKTHDIAFSNRPRSI-- 116 (265)
Q Consensus 44 ~~pg-p~~~p~~G~~~~~----~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~i~~il~~~~~~~~~~~~~~-- 116 (265)
.||| ++++|++|....+ ...+++..+.+++++ ||++.. .+.+++++++.+++|+.+ ..|+++....
T Consensus 35 ~ppG~~~~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d--~~f~~~~~~~~~ 107 (381)
T 2yjn_B 35 MIRGLHWGYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDD--PAFTRATGRTPE 107 (381)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHC--SSEESSCCCCCH
T ss_pred CCCcccccccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcC--CCcCCCcccccc
Confidence 4566 3467999975432 156889999999876 998764 568999999999999976 3566543211
Q ss_pred cc----cccccCCceeEecCCChhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccHHHHH-
Q 047737 117 AT----KILLYDGKDLGFAEYGEYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGGSTINLSEMI- 191 (265)
Q Consensus 117 ~~----~~~~~~~~~~~~~~~g~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~- 191 (265)
.. ......+.+++ ..+|++| +++|+ . .+.+.+.++++++.|. +.+|+.+.+
T Consensus 108 ~~~~~~~~~~~~~~~l~-~~dg~~H--------~~~Ft-----~-~~~i~~~~~~ll~~~~---------g~~Dl~~~~a 163 (381)
T 2yjn_B 108 WMRAAGAPPAEWAQPFR-DVHAASW--------EGEVP-----D-VGELAESFAGLLPGAG---------ARLDLVGDFA 163 (381)
T ss_dssp HHHHHTCCHHHHTHHHH-HHHHCCC--------CSCCC-----C-CSCHHHHTSTTSCC---------------CCCCCC
T ss_pred cccccccccchhhhhhh-hCCchhh--------hhccC-----C-hHHHHHHHHHHHHhcc---------CcchHHHHHH
Confidence 00 00000033433 3458888 57788 3 6777888888877763 368888665
Q ss_pred HHHHHHHhhHHhcccccc
Q 047737 192 LAVSNNIATRCIFGRKVE 209 (265)
Q Consensus 192 ~~~t~~vi~~~~fG~~~~ 209 (265)
..+++++|+++ ||.+.+
T Consensus 164 ~~l~~~vi~~l-~G~~~~ 180 (381)
T 2yjn_B 164 WQVPVQGMTAV-LGAAGV 180 (381)
T ss_dssp THHHHHHHHTC------C
T ss_pred HHHHHHHHHHH-cCCCHH
Confidence 69999999995 998875
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.99 E-value=15 Score=23.26 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=36.7
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeC--------CccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG--------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~~ 104 (265)
--++|++. ..-....+.++..+||+|..+.+. |.-.|...+++.+..++..
T Consensus 13 ~lfV~~Lp---~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~ 71 (103)
T 1s79_A 13 SVYIKGFP---TDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 71 (103)
T ss_dssp CEEEECCC---TTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTS
T ss_pred EEEEECCC---CCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHc
Confidence 34456654 234556788889999999888764 3457788999999998863
No 79
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=67.04 E-value=22 Score=22.70 Aligned_cols=58 Identities=24% Similarity=0.393 Sum_probs=40.7
Q ss_pred CCCCCCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeC------CccEEEeccHHHHHHHHHh
Q 047737 44 LPPSPPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 44 ~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~------~~~~v~v~~p~~i~~il~~ 104 (265)
.||.|...-++|++.. .-....+.++..+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 3 ~~~~~~~~l~V~nlp~---~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPY---KITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp CCTTCCSEEEEESCCT---TCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHH
Confidence 3455555556777652 34456688889999999888772 3457888899988888753
No 80
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=64.54 E-value=19 Score=21.89 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=36.5
Q ss_pred CCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeC----CccEEEeccHHHHHHH
Q 047737 48 PPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG----NSPSLVVSSAEVASEM 101 (265)
Q Consensus 48 p~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~v~v~~p~~i~~i 101 (265)
|+..-++|++. ..-..+.+.+++.+||+|..+.+. |.-.|-..+++.++.+
T Consensus 10 ~~~~l~V~~Lp---~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 10 HGSKVFVGRCT---EDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp -CCEEEEESCC---TTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCC---CCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 33445567764 344556788999999999998875 4567888999988853
No 81
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=59.88 E-value=17 Score=20.97 Aligned_cols=42 Identities=10% Similarity=0.219 Sum_probs=30.9
Q ss_pred CchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHhc
Q 047737 64 VPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKTH 105 (265)
Q Consensus 64 ~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~~ 105 (265)
-....+.++..+||+|..+.+. |.-.|-..+++.++..+..+
T Consensus 11 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~ 61 (75)
T 1iqt_A 11 TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61 (75)
T ss_dssp CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTS
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhC
Confidence 3456678888999998887763 23467778999998888643
No 82
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=59.41 E-value=25 Score=20.71 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=31.1
Q ss_pred chhHHHHHHhhcCCeEEEEeC-------CccEEEeccHHHHHHHHHh
Q 047737 65 PHRSLKALSDRYGPIILVYFG-------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 65 ~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~~ 104 (265)
....+.++..+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 346788889999999888775 3356778899999888753
No 83
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=54.76 E-value=28 Score=19.97 Aligned_cols=41 Identities=7% Similarity=0.100 Sum_probs=29.9
Q ss_pred CchhHHHHHHhhcCCeEEEEeCC---------ccEEEeccHHHHHHHHHh
Q 047737 64 VPHRSLKALSDRYGPIILVYFGN---------SPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 64 ~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~ 104 (265)
-..+.+.++..+||+|..+.+.. .-.|-..+++.++.++..
T Consensus 11 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 60 (75)
T 2mss_A 11 TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60 (75)
T ss_dssp CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSS
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHC
Confidence 34566788889999988877632 245777899999888753
No 84
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=51.29 E-value=66 Score=23.19 Aligned_cols=57 Identities=9% Similarity=0.096 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-ccccHHHHHHHHH
Q 047737 135 EYWRQLWKICVLELLSNKRVKSAQHIRVEEVSCLINKIRRSCINGHGG-STINLSEMILAVS 195 (265)
Q Consensus 135 ~~w~~~R~~l~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~vd~~~~~~~~t 195 (265)
..|..++..+ +..|++.+|..-...-..++++-++.+... -.+| +.+|+.+++..|.
T Consensus 111 ~k~q~~~~~l-s~~~sp~~L~~~L~~a~~e~eeeS~~l~~~---F~~~~~e~dv~~Fl~~y~ 168 (192)
T 2p22_C 111 ASWQDYHSEF-SKKYGDIALKKKLEQNTKKLDEESSQLETT---TRSIDSADDLDQFIKNYL 168 (192)
T ss_dssp HHHHHHHHHH-HHTSSHHHHHHHHHHHHHHHHHHHHHHHHS---CSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCcccchHHHHHHHHH
Confidence 4455555676 788999998887777777778888888764 3222 2567777775553
No 85
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=50.04 E-value=22 Score=22.48 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=33.2
Q ss_pred CCchhHHHHHHhhcCCeEEEEeCCc-cEEEeccHHHHHHHHHh
Q 047737 63 NVPHRSLKALSDRYGPIILVYFGNS-PSLVVSSAEVASEMMKT 104 (265)
Q Consensus 63 ~~~~~~~~~~~~~yG~i~~~~~~~~-~~v~v~~p~~i~~il~~ 104 (265)
.--..-+.++++.||.|.--|+-.. -.+++.+|+.+++++..
T Consensus 26 ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 26 EWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp TCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHH
T ss_pred hhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHh
Confidence 3344567888999998877787554 68999999999999973
No 86
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=48.81 E-value=50 Score=21.08 Aligned_cols=57 Identities=11% Similarity=0.116 Sum_probs=39.8
Q ss_pred ccccccccccCCCchhHHHHHHhhcCCeEEEEeC--CccEEEeccHHHHHHHHHh-ccccccC
Q 047737 52 PIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG--NSPSLVVSSAEVASEMMKT-HDIAFSN 111 (265)
Q Consensus 52 p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--~~~~v~v~~p~~i~~il~~-~~~~~~~ 111 (265)
-++|++.. .-..+.+.+++.+||+|..+.+. +.-.|-..+++.++..+.. +...+..
T Consensus 19 l~V~nLp~---~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 78 (115)
T 3beg_B 19 VVVSGLPP---SGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 78 (115)
T ss_dssp EEEEECCS---SCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34666652 34456678889999999888874 4567888899998888864 3334443
No 87
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.91 E-value=44 Score=20.99 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=41.5
Q ss_pred ccccccccccCC-CchhHHHHHHhhcC-CeEEEEeCCccEEEeccHHHHHHHHHh-ccccccCCC
Q 047737 52 PIIGNLHQIVQN-VPHRSLKALSDRYG-PIILVYFGNSPSLVVSSAEVASEMMKT-HDIAFSNRP 113 (265)
Q Consensus 52 p~~G~~~~~~~~-~~~~~~~~~~~~yG-~i~~~~~~~~~~v~v~~p~~i~~il~~-~~~~~~~~~ 113 (265)
-+++|+..-... .....+.+++.+|| +|..+ .+|.-.|...+.+.++..+.. +...+-.|+
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 347777644221 22345778999995 88888 578999999999999888854 333343444
No 88
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.13 E-value=44 Score=19.67 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=34.4
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeCC---------ccEEEeccHHHHHHHHH
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGN---------SPSLVVSSAEVASEMMK 103 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~ 103 (265)
.-++|++. ..-..+.+.++..+||+|..+.+.. .-.|-..+++.+...+.
T Consensus 7 ~l~v~nlp---~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 7 GLYIRGLQ---PGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp EEEEESCC---TTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCC---CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 34456654 2344566778888999988877532 24677789998888875
No 89
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=45.90 E-value=56 Score=20.82 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=36.1
Q ss_pred ccccccccccCCCchhHHHHHHhhcCCeEEEEeC-------CccEEEeccHHHHHHHHHh
Q 047737 52 PIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG-------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 52 p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~~ 104 (265)
-++|++. ..-..+.+.+++.+||+|..+.+. |.-.|-..+++.++..+..
T Consensus 8 lfV~nLp---~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 8 IFIKNLD---KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp EEEESCC---TTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHH
T ss_pred EEECCCC---CCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHH
Confidence 4556664 234556788899999998877653 2347888999999988854
No 90
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=42.13 E-value=41 Score=19.93 Aligned_cols=51 Identities=12% Similarity=0.254 Sum_probs=35.4
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
--++|++.. .-....+.++..+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 13 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 13 KMFVGGLSW---DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp EEEEECCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 345566642 34556788889999998887763 1246777889988888754
No 91
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=41.94 E-value=60 Score=20.04 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=37.4
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeC-CccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG-NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~v~~p~~i~~il~~ 104 (265)
.-++|++.. .-....+.++..+||+|..+.+. +.-.|-..+++.+...+..
T Consensus 13 ~l~V~nl~~---~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 13 VLFVRNLAN---TVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CEEEECCCT---TCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHH
Confidence 345566642 34556688889999999998874 4467888899999988864
No 92
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=41.40 E-value=88 Score=21.83 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=35.2
Q ss_pred cccccccccCCCchhHHHHHHhhcCCeEEEEeC-----CccEEEeccHHHHHHHHHh
Q 047737 53 IIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG-----NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 53 ~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-----~~~~v~v~~p~~i~~il~~ 104 (265)
++|++. ..-..+.+.+.+.+||.|-++.+. +.-.|-..|++.+......
T Consensus 50 ~VgNL~---~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 50 IVENLF---YPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp EECSCC---SCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHH
T ss_pred EEeCcC---CCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHH
Confidence 356664 244556788999999998888763 2357778899888887754
No 93
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=41.10 E-value=62 Score=19.98 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=34.4
Q ss_pred cccccccccCCCchhHHHHHHhhcCCeEEEEeCC---------ccEEEeccHHHHHHHHHh
Q 047737 53 IIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGN---------SPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 53 ~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~ 104 (265)
++|++. ..-..+.+.++..+||+|..+.+.. .-.|-..+++.+...+..
T Consensus 23 fV~nLp---~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 23 IVNYLP---QNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp EEESCC---TTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCC---CCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH
Confidence 456664 2344567888899999998877631 135778899999888754
No 94
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=40.92 E-value=67 Score=20.31 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=38.9
Q ss_pred cccccccccCCCchhHHHHHHhhcCCeEEEEeC---CccEEEeccHHHHHHHHHh-ccccccCC
Q 047737 53 IIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---NSPSLVVSSAEVASEMMKT-HDIAFSNR 112 (265)
Q Consensus 53 ~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~~-~~~~~~~~ 112 (265)
++|++. ..-....+.+++.+||+|..+.+. +.-.|-..+++.++..+.. +...+..+
T Consensus 14 ~V~nLp---~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 14 LAKNLP---AGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp EEESCC---TTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred EEeCCC---CCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 455553 234556788899999999988873 3457778899988888754 34444433
No 95
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=40.27 E-value=52 Score=21.24 Aligned_cols=66 Identities=14% Similarity=0.178 Sum_probs=39.1
Q ss_pred CCCCCCCccccccccccC-------CCchhHHHHHHhhcCCeEEEEeC-----CccEEEeccHHHHHHHHHh-cccccc
Q 047737 45 PPSPPRLPIIGNLHQIVQ-------NVPHRSLKALSDRYGPIILVYFG-----NSPSLVVSSAEVASEMMKT-HDIAFS 110 (265)
Q Consensus 45 ~pgp~~~p~~G~~~~~~~-------~~~~~~~~~~~~~yG~i~~~~~~-----~~~~v~v~~p~~i~~il~~-~~~~~~ 110 (265)
||.|..+-.+.|+..-.. .+..+-+.+...+||.|..+.+. |.-.|-..+++.+...... +...|.
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456655555555544311 12223456667789999888773 3456777788888777644 444443
No 96
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.22 E-value=59 Score=19.51 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=36.1
Q ss_pred CCccccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 50 RLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 50 ~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
..-++|++.. .-....+.++..+||+|..+.+. +.-.|-..+++.+...+..
T Consensus 16 ~~l~v~nlp~---~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 16 CCLGVFGLSL---YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp GCEEEESCCS---SCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCC---CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 3445666642 34456688889999998887763 1246777899999988864
No 97
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=39.88 E-value=67 Score=19.98 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=38.0
Q ss_pred CccccccccccCCC----chhHHHHHHhhcCCeEEEEeC-------CccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNV----PHRSLKALSDRYGPIILVYFG-------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~----~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~~ 104 (265)
.-++|++..- ..+ ....+.++..+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 17 ~l~V~nLp~~-~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 17 VIVVDNVPQV-GPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp EEEEESCCCC-CTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHH
T ss_pred EEEEeCCCcc-hhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 4467777643 222 457788999999999998875 3456777888888888764
No 98
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=39.58 E-value=71 Score=20.23 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=36.7
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
--++|++. ..-..+.+.++..+||+|..+.+. |.-.|...+++.++..+..
T Consensus 8 ~lfV~nL~---~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 8 EVTFARLN---DNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp EEEEESCC---TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEECCC---CCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 34556664 234566788899999999888763 1237888899999988854
No 99
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.11 E-value=73 Score=20.23 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=37.4
Q ss_pred CCccccccccccCCCchhHHHHHHhhcCCeEEEEeC---CccEEEeccHHHHHHHHH
Q 047737 50 RLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---NSPSLVVSSAEVASEMMK 103 (265)
Q Consensus 50 ~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~ 103 (265)
..-++|++.. .-..+.+.++..+||+|..+.+. |.-.|-..+++.+...+.
T Consensus 17 ~~LfV~nLp~---~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 17 RVIHIRKLPI---DVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp CEEEECSCCT---TSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 3455677652 34556688999999999888874 345788889998888875
No 100
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=38.58 E-value=77 Score=20.36 Aligned_cols=58 Identities=10% Similarity=0.171 Sum_probs=39.7
Q ss_pred ccccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh-ccccccCC
Q 047737 52 PIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT-HDIAFSNR 112 (265)
Q Consensus 52 p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~-~~~~~~~~ 112 (265)
-++|++. ..-....+.++..+||+|..+.+. |.-.|-..+++.+...+.. +...+..+
T Consensus 25 l~V~nlp---~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 25 LFVTGVH---EEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp EEEESCC---TTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred EEEeCCC---CCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 3456654 234456688889999999988773 3457888999999998853 44444433
No 101
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=38.44 E-value=66 Score=19.52 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=39.5
Q ss_pred ccccccccccCCCchhHHHHHHhhcCCeEEEEe-CCccEEEeccHHHHHHHHHh-cccccc
Q 047737 52 PIIGNLHQIVQNVPHRSLKALSDRYGPIILVYF-GNSPSLVVSSAEVASEMMKT-HDIAFS 110 (265)
Q Consensus 52 p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~-~~~~~~ 110 (265)
-++|++.. ..-....+.++..+||+|..+.+ -|.-.|-..+++.+...+.. +...+.
T Consensus 13 l~V~nlp~--~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~ 71 (96)
T 2kvi_A 13 LFIGNLPL--KNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNF 71 (96)
T ss_dssp EEEESSTT--SCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCB
T ss_pred EEEeCCCc--ccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 34566642 03455668888999999888877 45567888999999998864 333343
No 102
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=37.44 E-value=34 Score=21.68 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=32.3
Q ss_pred chhHHHHHHhhcCCeEEEEeCCc-cEEEeccHHHHHHHHHh
Q 047737 65 PHRSLKALSDRYGPIILVYFGNS-PSLVVSSAEVASEMMKT 104 (265)
Q Consensus 65 ~~~~~~~~~~~yG~i~~~~~~~~-~~v~v~~p~~i~~il~~ 104 (265)
-..-+.++...||++.--|+... -.+++.+|+.+++++..
T Consensus 18 Kt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 18 KTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp CHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred hhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHh
Confidence 34567888899998887788554 68999999999999974
No 103
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=37.23 E-value=75 Score=19.82 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=37.5
Q ss_pred ccccccccccCCCchhHHHHHHhhcCCeEEEEeC--CccEEEeccHHHHHHHHHh
Q 047737 52 PIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG--NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 52 p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--~~~~v~v~~p~~i~~il~~ 104 (265)
-++|++. ..-..+.+.+++.+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 18 l~V~nLp---~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 18 VVVSGLP---PSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp EEEESCC---SSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCC---CCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 3566665 244566788899999999888774 5677888899999888864
No 104
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.63 E-value=91 Score=20.30 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=36.7
Q ss_pred CCccccccccccCCCchhHHHHHHhhcCCeEEEEeC---CccEEEeccHHHHHHHHH
Q 047737 50 RLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---NSPSLVVSSAEVASEMMK 103 (265)
Q Consensus 50 ~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~ 103 (265)
..-++|++.. .-....+.+++.+||.|..+.+. |.-.|-..+.+.+...+.
T Consensus 32 ~~LfVgNLp~---~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 32 RVIHIRKLPI---DVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp SEEEEESCCT---TCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHH
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 3456677653 34556788999999998887764 446777788888888875
No 105
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=35.08 E-value=77 Score=19.33 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=31.1
Q ss_pred CchhHHHHHHhhcCCeEEEEeC----CccEEEeccHHHHHHHHHh
Q 047737 64 VPHRSLKALSDRYGPIILVYFG----NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 64 ~~~~~~~~~~~~yG~i~~~~~~----~~~~v~v~~p~~i~~il~~ 104 (265)
-....+.++..+||+|..+.+. +.-.|-..+++.+...+..
T Consensus 12 ~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~ 56 (101)
T 2hvz_A 12 AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRG 56 (101)
T ss_dssp CSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHH
Confidence 3456678889999998777763 3457778999999888863
No 106
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=35.04 E-value=80 Score=19.47 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=34.8
Q ss_pred cccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 53 IIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 53 ~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
++|++.. .-....+.++..+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 27 ~V~nlp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 27 FVTGVHE---EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp EEECCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCC---CCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 4565542 34456688899999998888763 2246777899999888864
No 107
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=34.99 E-value=95 Score=20.31 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=36.8
Q ss_pred CCccccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 50 RLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 50 ~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
..-++|++.. .-....+.++..+||+|..+.+. |.-.|-..+++.++.++..
T Consensus 47 ~~l~V~nLp~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 47 CCLGVFGLSL---YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp SCBCEETCTT---SCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3445666642 34456688889999999888773 2346778899999988864
No 108
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=34.80 E-value=71 Score=20.49 Aligned_cols=41 Identities=10% Similarity=0.058 Sum_probs=30.6
Q ss_pred CCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHH
Q 047737 63 NVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMK 103 (265)
Q Consensus 63 ~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~ 103 (265)
.-..+.+.+++.+||+|..+.+. |.-.|-..+++.+...+.
T Consensus 47 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 96 (124)
T 2jwn_A 47 GSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVA 96 (124)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHT
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHh
Confidence 34456788889999998877662 234678889999998883
No 109
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=34.54 E-value=98 Score=20.57 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=34.8
Q ss_pred cccccccccCCCchhHHHHHHhhcCCeEEEEeCC-----ccEEEeccHHHHHHHHHh
Q 047737 53 IIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGN-----SPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 53 ~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~-----~~~v~v~~p~~i~~il~~ 104 (265)
++||+. ..-..+.+.+++.+||.|-++.+.. .-.|-..+++.++.....
T Consensus 32 ~V~NL~---~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 32 IVENLF---YPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp EEESCC---SCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH
T ss_pred EECCCC---CCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHH
Confidence 367764 2445567889999999988877642 257778888887777643
No 110
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=33.60 E-value=89 Score=19.59 Aligned_cols=49 Identities=16% Similarity=0.267 Sum_probs=35.5
Q ss_pred cccccccccCCCchhHHHHHHhhcCCeEEEEe-CCccEEEeccHHHHHHHHHh
Q 047737 53 IIGNLHQIVQNVPHRSLKALSDRYGPIILVYF-GNSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 53 ~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~ 104 (265)
++|++. ..-....+.++..+||+|..+.+ -|.-.|-..+++.+...+..
T Consensus 35 ~V~nLp---~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~ 84 (108)
T 2jvo_A 35 FVRPFP---LDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEE 84 (108)
T ss_dssp EECSSC---TTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHH
T ss_pred EEECCC---CCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 456553 23345668889999998877776 45567888899999888854
No 111
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=33.60 E-value=87 Score=19.48 Aligned_cols=50 Identities=10% Similarity=0.144 Sum_probs=35.9
Q ss_pred ccccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 52 PIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 52 p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
-++|++.. .-....+.++..+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 29 l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 87 (110)
T 1oo0_B 29 LFVTSIHE---EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 87 (110)
T ss_dssp EEEESCCT---TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 34566542 34456688899999999888874 2347778899999888863
No 112
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.95 E-value=80 Score=19.87 Aligned_cols=48 Identities=10% Similarity=0.044 Sum_probs=33.1
Q ss_pred cccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHH
Q 047737 53 IIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMK 103 (265)
Q Consensus 53 ~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~ 103 (265)
++|++. ..-....+.+++.+||.|..+.+. |.-.|-..+++.+...+.
T Consensus 29 ~V~nlp---~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 85 (114)
T 2cq4_A 29 FCMQLA---ARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG 85 (114)
T ss_dssp EEESCC---TTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHH
T ss_pred EEeCCC---CCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHH
Confidence 345543 234456688889999999888874 234677788888887773
No 113
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=31.46 E-value=86 Score=18.76 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=35.0
Q ss_pred ccccccccccCCCchhHHHHHHhhcCCeEEEEeCC--------ccEEEeccHHHHHHHHHh
Q 047737 52 PIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGN--------SPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 52 p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~--------~~~v~v~~p~~i~~il~~ 104 (265)
-++|++. ..-....+.++..+||+|..+.+.. .-.|-..+++.++..+..
T Consensus 19 l~v~nlp---~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (95)
T 2ywk_A 19 VFVGNLE---ARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIAL 76 (95)
T ss_dssp EEEECCC---TTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHH
T ss_pred EEEECCC---CCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 3456554 2344566888999999998877632 346777889988888763
No 114
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.29 E-value=89 Score=18.90 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=35.6
Q ss_pred ccccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 52 PIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 52 p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
-++|++. ..-....+.++..+||+|..+.+. +.-.|-..+++.+...+..
T Consensus 11 l~V~nlp---~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 11 LFVRNLS---YTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp EEEECCC---TTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCC---CCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 3455554 234456688889999999888873 2346788999999988844
No 115
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=30.85 E-value=1e+02 Score=19.33 Aligned_cols=52 Identities=10% Similarity=0.125 Sum_probs=36.9
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeCC---------ccEEEeccHHHHHHHHHhc
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGN---------SPSLVVSSAEVASEMMKTH 105 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~~ 105 (265)
--++|++. ..-....+.+++.+||+|..+.+.. .-.|-..+++.+...+...
T Consensus 27 ~lfV~nLp---~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 27 KMFIGGLS---WQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp CEEEESCC---TTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred EEEEeCCC---CCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 33556654 2344566888899999998887732 3477889999999988643
No 116
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.69 E-value=69 Score=20.10 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=33.9
Q ss_pred cccccccccCCCchhHHHHHHhhcCCeEEEEeC-------CccEEEeccHHHHHHHHHh
Q 047737 53 IIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG-------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 53 ~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~~ 104 (265)
++|++. ..-..+.+.++..+||+|..+.+. |.-.|-..+++.++..+..
T Consensus 33 ~V~nLp---~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 33 HVSNIP---FRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp EEESCC---TTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHH
T ss_pred EEECCC---CcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHH
Confidence 455553 234556688899999988777763 3346777888888887753
No 117
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.15 E-value=75 Score=18.79 Aligned_cols=46 Identities=13% Similarity=0.374 Sum_probs=33.2
Q ss_pred cccccccccCCCchhHHHHHHhhcCCeEEEEeC----CccEEEeccHHHHHHH
Q 047737 53 IIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG----NSPSLVVSSAEVASEM 101 (265)
Q Consensus 53 ~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----~~~~v~v~~p~~i~~i 101 (265)
++|++. ..-..+.+.++..+||+|..+.+. |.-.|-..+++.++.+
T Consensus 9 ~V~nLp---~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 9 FVGRCT---GDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp EEESCC---SSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT
T ss_pred EEeCCC---CCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH
Confidence 455554 234456688889999999888874 3467888899988764
No 118
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.06 E-value=1e+02 Score=19.28 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=39.0
Q ss_pred CCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeC---CccEEEeccHHHHHHHHHh
Q 047737 48 PPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 48 p~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~~ 104 (265)
|...-++|++..- .-....+.++..+||.|..+.+. +.-.|-..+++.+...+..
T Consensus 14 p~~~l~V~nLp~~--~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~ 71 (102)
T 1x4d_A 14 TRRVVHIMDFQRG--KNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDY 71 (102)
T ss_dssp CCCEEEEESCCCS--SSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCC--cCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 4344566777530 34456688899999999998875 3457888899988888753
No 119
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.01 E-value=90 Score=18.52 Aligned_cols=51 Identities=18% Similarity=0.365 Sum_probs=36.8
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEe-CCccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYF-GNSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~ 104 (265)
--++|++. ..-....+.++..+||+|..+.+ -+.-.|-..+++.+...+..
T Consensus 10 ~l~V~nlp---~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~ 61 (90)
T 2dnq_A 10 KLFIGNLP---REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRN 61 (90)
T ss_dssp EEEEESCC---SSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCC---CCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 34456654 23445668889999999988876 44567888999999888853
No 120
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.85 E-value=98 Score=18.92 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=37.5
Q ss_pred CCCCccccccccccCCCchhHHHHHHhhcCCeEEEEeC-------CccEEEeccHHHHHHHHHh
Q 047737 48 PPRLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG-------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 48 p~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~~ 104 (265)
+..--++|++.. .-....+.++..+||+|..+.+. +.-.|-..+++.+...+..
T Consensus 14 ~~~~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2d9p_A 14 QVVNLYVKNLDD---GIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTE 74 (103)
T ss_dssp SCCCEEEECCCT---TCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHH
Confidence 334455666642 34456688888999998887764 2346778899999988864
No 121
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=29.75 E-value=94 Score=18.67 Aligned_cols=54 Identities=19% Similarity=0.374 Sum_probs=35.3
Q ss_pred CccccccccccC-CCchhHHHHHHhhcCCeEEEEeC------CccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQ-NVPHRSLKALSDRYGPIILVYFG------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~-~~~~~~~~~~~~~yG~i~~~~~~------~~~~v~v~~p~~i~~il~~ 104 (265)
.-++|++..-.. .+....+.++..+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 345666543211 11122334889999999888775 4567888999999888854
No 122
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.72 E-value=93 Score=18.60 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=39.1
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeCC---------ccEEEeccHHHHHHHHHh-ccccccCC
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGN---------SPSLVVSSAEVASEMMKT-HDIAFSNR 112 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~-~~~~~~~~ 112 (265)
.-++|++. ..-....+.++..+||+|..+.+.. .-.|-..+++.+...+.. +...+..+
T Consensus 7 ~l~v~nlp---~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (95)
T 2dnz_A 7 GLYVGSLH---FNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 75 (95)
T ss_dssp EEEEESCC---TTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred EEEEeCCC---CCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 34456654 2345566888899999988877632 346778899999988863 34344333
No 123
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=29.71 E-value=1.1e+02 Score=19.49 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=35.4
Q ss_pred ccccccccccCCCchhHHHHHHhhcCCeEEEEeC--------CccEEEeccHHHHHHHHHh
Q 047737 52 PIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG--------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 52 p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~~ 104 (265)
-++|++. ..-....+.++..+||+|..+.+. |.-.|-..+++.++..+..
T Consensus 10 l~V~nLp---~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 10 LFIGGLN---RETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp EEEECCT---TTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHH
T ss_pred EEEeCCC---CCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH
Confidence 3456554 234556688889999998777663 3356778899999988864
No 124
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.55 E-value=74 Score=20.02 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=34.4
Q ss_pred CccccccccccCCCchhHHH---HHHhhcCCeEEEEeC------------CccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLK---ALSDRYGPIILVYFG------------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~---~~~~~yG~i~~~~~~------------~~~~v~v~~p~~i~~il~~ 104 (265)
.-++|++.. .-..+.+. ++..+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 17 ~l~V~nLp~---~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ 82 (111)
T 2cpi_A 17 LVFVVGLSQ---RLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC 82 (111)
T ss_dssp CEEEEEECT---TTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCC---CCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH
Confidence 345666653 23334455 788999998887764 2346777899999888865
No 125
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=29.54 E-value=1.1e+02 Score=19.46 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=37.0
Q ss_pred CccccccccccCCCchhHHHHHHhhcC-CeEEEEeC-----CccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYG-PIILVYFG-----NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG-~i~~~~~~-----~~~~v~v~~p~~i~~il~~ 104 (265)
--++|++. ..-..+.+.+++.+|| .|..+.+. |.-.|-..+++.++..+..
T Consensus 30 ~l~VgnLp---~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 30 RITMKNLP---EGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALER 86 (111)
T ss_dssp EEEEECSS---CCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHH
T ss_pred EEEEECCC---CCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHH
Confidence 34556664 2345667888999999 78777763 4567888899999888754
No 126
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=29.52 E-value=1.2e+02 Score=19.82 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=34.3
Q ss_pred cccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 53 IIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 53 ~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
++|++. ..-..+.+.++..+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 46 ~V~nLp---~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 103 (139)
T 1u6f_A 46 MVNYIP---TTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103 (139)
T ss_dssp EEESCS---TTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCC---CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 345553 233456788889999998887663 1246778899999988864
No 127
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.51 E-value=84 Score=19.25 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=35.5
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeCC---------ccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGN---------SPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~ 104 (265)
.-++|++.. .-....+.++..+||+|..+.+.. .-.|-..+++.+...+..
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 17 TIRVTNLSE---DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp EEEEESCCT---TCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 345566542 344566788889999988877632 246778899999988864
No 128
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.51 E-value=81 Score=17.87 Aligned_cols=42 Identities=5% Similarity=0.080 Sum_probs=28.0
Q ss_pred CchhHHHHHHhhcCCeEEEEeCC---------ccEEEeccHHHHHHHHHhc
Q 047737 64 VPHRSLKALSDRYGPIILVYFGN---------SPSLVVSSAEVASEMMKTH 105 (265)
Q Consensus 64 ~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~~ 105 (265)
-..+.+.++..+||+|..+.+.. .-.|-..+++.+...+...
T Consensus 12 ~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 62 (77)
T 1uaw_A 12 TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62 (77)
T ss_dssp CCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTT
T ss_pred CCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhC
Confidence 34456788889999877665522 2355567888888877543
No 129
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=29.48 E-value=93 Score=22.14 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=35.3
Q ss_pred cccccccccCCCchhHHHHHHhhcCCeEEEEeC--------CccEEEeccHHHHHHHHHh
Q 047737 53 IIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG--------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 53 ~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~~ 104 (265)
++|++. .......+.+++.+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 113 ~V~nLp---~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~ 169 (193)
T 2voo_A 113 YIKGFP---TDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 169 (193)
T ss_dssp EEECCC---TTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred EecCCC---CcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHh
Confidence 345543 345567788999999998877653 3457778899999998854
No 130
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.43 E-value=1.1e+02 Score=19.72 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=36.5
Q ss_pred CCccccccccccCCCchhHHHHHHhhcCCeEEEEeC---CccEEEeccHHHHHHHHH
Q 047737 50 RLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---NSPSLVVSSAEVASEMMK 103 (265)
Q Consensus 50 ~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~ 103 (265)
..-++|++..- .-....+.++..+||+|..+.+. |.-.|-..+++.+...+.
T Consensus 26 ~~l~V~NLp~~--~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 26 RVIHLSNLPHS--GYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp CEEEEESCCCS--SCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHH
T ss_pred CEEEEeCCCCc--cCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHH
Confidence 34556776521 13556688899999998888874 335777789988888775
No 131
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=29.39 E-value=99 Score=18.83 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=36.3
Q ss_pred cccccccccCCCchhHHHHHHhhcCCeEEEEeC-CccEEEeccHHHHHHHHHh
Q 047737 53 IIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG-NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 53 ~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~v~~p~~i~~il~~ 104 (265)
++|++.. ..-....+.++..+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 26 ~V~nLp~--~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 26 FIGNLPL--KNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEX 76 (97)
T ss_dssp EEESCCS--SCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCc--ccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 4566542 033456688899999999888873 4567888899999888864
No 132
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.26 E-value=1.1e+02 Score=19.08 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=35.6
Q ss_pred cccccccccCCCchhHHHHHHhhcCCeEEEEeC---CccEEEeccHHHHHHHHHh
Q 047737 53 IIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 53 ~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~~ 104 (265)
++|++. ..-....+.++..+||+|..+.+. +.-.|-..+++.+...+..
T Consensus 29 ~V~nl~---~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 29 YCGGIA---SGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp EEECCS---SCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred EEeCCC---CCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 456654 234556678888999999888773 4467788899998888754
No 133
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=29.15 E-value=1e+02 Score=18.96 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=34.7
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeC---CccEEEeccHHHHHHHHH
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---NSPSLVVSSAEVASEMMK 103 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~ 103 (265)
+-++||+. ..-....+.++..+||+|..+.+. |.-.|-..+++.+.....
T Consensus 9 wL~VgNL~---~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~ 61 (89)
T 2wbr_A 9 WLLLKNLT---AQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQM 61 (89)
T ss_dssp EEEEECCC---TTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred eEEEeCCC---ccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHH
Confidence 44567764 344557789999999999988763 335677778866665553
No 134
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=29.09 E-value=1.2e+02 Score=19.81 Aligned_cols=53 Identities=21% Similarity=0.279 Sum_probs=35.1
Q ss_pred ccccccccccC-CCchhHHHHHHhhcCCeEEEEeC------CccEEEeccHHHHHHHHHh
Q 047737 52 PIIGNLHQIVQ-NVPHRSLKALSDRYGPIILVYFG------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 52 p~~G~~~~~~~-~~~~~~~~~~~~~yG~i~~~~~~------~~~~v~v~~p~~i~~il~~ 104 (265)
-++|++..-.. .+....+.+++.+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 32 LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~ 91 (127)
T 2a3j_A 32 VLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEA 91 (127)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHH
Confidence 45677653211 12223456789999999888763 3467888899988888754
No 135
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.07 E-value=94 Score=18.43 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=37.7
Q ss_pred CCccccccccccCCCchhHHHHHHhhcCCeEEEEeC-CccEEEeccHHHHHHHHHh
Q 047737 50 RLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG-NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 50 ~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~v~~p~~i~~il~~ 104 (265)
..-++|++.. .-....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 10 ~~l~V~nlp~---~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~ 62 (90)
T 2dnp_A 10 WKIFVGNVSA---ACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQ 62 (90)
T ss_dssp CCEEEESCCT---TCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 3445666642 34556688889999999888874 3467788999999888763
No 136
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.98 E-value=1.1e+02 Score=19.09 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=36.9
Q ss_pred CCccccccccccCCCchhHHHHHHhhcCCeEEEEeC---CccEEEeccHHHHHHHHH
Q 047737 50 RLPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---NSPSLVVSSAEVASEMMK 103 (265)
Q Consensus 50 ~~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~ 103 (265)
..-++|++.. .-....+.++..+||.|..+.+. |.-.|-..+++.+...+.
T Consensus 16 ~~l~V~nLp~---~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 16 RVLHIRKLPG---EVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp SEEEEESCCT---TCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCC---CCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 3455677652 34456688899999999888763 346778889998888875
No 137
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=28.23 E-value=91 Score=18.00 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=30.4
Q ss_pred CchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 64 VPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 64 ~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
-....+.++..+||+|..+.+. |.-.|-..+++.++..+..
T Consensus 13 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 62 (83)
T 3md1_A 13 VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 62 (83)
T ss_dssp CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 3445678888999998887653 1247788899999888864
No 138
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.11 E-value=1e+02 Score=18.60 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=35.0
Q ss_pred ccccccccccCCCchhHHHHHHhhcCCeEEEEeC---CccEEEeccHHHHHHHHHh
Q 047737 52 PIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 52 p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~~ 104 (265)
-++|++ .-....+.++..+||+|..+.++ +.-.|-..+++.+...+..
T Consensus 18 l~V~n~-----~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 18 LYVYGE-----DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp EEEECS-----SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred EEEcCC-----CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 355662 33456688889999999888875 3356777899998888854
No 139
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.06 E-value=1.1e+02 Score=18.75 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=35.7
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeCC-------ccEEEeccHHHHHHHHH
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGN-------SPSLVVSSAEVASEMMK 103 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~-------~~~v~v~~p~~i~~il~ 103 (265)
.-++|++.. .-....+.++..+||+|..+.+.. .-.|-..+++.+...+.
T Consensus 17 ~l~V~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 17 TLYVGNLSR---DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp EEEEESCCT---TCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCc---cCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHH
Confidence 345566542 345567888899999998877632 34677889999988886
No 140
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=28.03 E-value=1.4e+02 Score=20.28 Aligned_cols=50 Identities=10% Similarity=0.144 Sum_probs=35.5
Q ss_pred ccccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 52 PIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 52 p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
-++|++. ..-....+.+++.+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 75 l~V~nLp---~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 133 (165)
T 1rk8_A 75 LFVTSIH---EEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 133 (165)
T ss_dssp EEEESCC---TTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCC---CCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHH
Confidence 3456654 234556788899999998887763 2346778899998888754
No 141
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=28.02 E-value=1e+02 Score=19.46 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=30.5
Q ss_pred CchhHHHHHHhhcCCeEEEEeCC---------ccEEEeccHHHHHHHHHh
Q 047737 64 VPHRSLKALSDRYGPIILVYFGN---------SPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 64 ~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~ 104 (265)
-..+.+.++..+||+|..+.+.. .-.|-..+++.+...+..
T Consensus 52 ~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 52 FTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp CCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 34567888899999998887742 236777888888888754
No 142
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=27.89 E-value=95 Score=18.12 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=34.3
Q ss_pred cccccccccCCCchhHHHHHHhhcCCeEEEEeCC---------ccEEEeccHHHHHHHHHh
Q 047737 53 IIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGN---------SPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 53 ~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~ 104 (265)
++|++. ..-....+.++..+||+|..+.+.. .-.|-..+++.+...+..
T Consensus 10 ~v~nlp---~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 10 FVGDLS---PEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp EEESCC---TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCC---CCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 455554 2344566888899999988877632 246777899999888864
No 143
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.88 E-value=1.1e+02 Score=18.74 Aligned_cols=55 Identities=11% Similarity=0.036 Sum_probs=37.7
Q ss_pred CCCCCccccccccccCCCchhHHHHHHhh-cCCeEEEEeC--------CccEEEeccHHHHHHHHHh
Q 047737 47 SPPRLPIIGNLHQIVQNVPHRSLKALSDR-YGPIILVYFG--------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 47 gp~~~p~~G~~~~~~~~~~~~~~~~~~~~-yG~i~~~~~~--------~~~~v~v~~p~~i~~il~~ 104 (265)
.|..--++|++.. .-..+.+.++..+ ||+|..+.+. |.-.|-..+++.+...+..
T Consensus 7 ~~~~~l~V~nLp~---~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 7 GPEYSLFVGDLTP---DVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp SCCCCEEEECCCT---TCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCcEEEEeCCCC---CCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH
Confidence 3334445677653 3445667888888 9998887762 2346778899999998864
No 144
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.70 E-value=1e+02 Score=18.84 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=33.7
Q ss_pred cccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 53 IIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 53 ~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
++|++. ..-....+.++..+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 12 ~V~nlp---~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 12 FVGNIP---YEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp EEESCC---TTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred EEeCCC---CcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 455554 234456688888999988776653 2346777899999988854
No 145
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.58 E-value=87 Score=19.74 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=34.4
Q ss_pred cccccccccCCCchhHHHHHHhhcCCeEEEEeCC---------ccEEEeccHHHHHHHHHh
Q 047737 53 IIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGN---------SPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 53 ~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~ 104 (265)
++|++. ..-....+.+++.+||+|..+.+.. .-.|-..+++.+...+..
T Consensus 31 ~V~nLp---~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 31 FIGGLS---FETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp EEECCT---TCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred EEeCCC---CCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 455554 2344566888899999887776632 346777899999998865
No 146
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=27.57 E-value=98 Score=18.16 Aligned_cols=40 Identities=15% Similarity=0.048 Sum_probs=29.2
Q ss_pred CchhHHHHHHhhcCCeEEEEeCC---------ccEEEeccHHHHHHHHH
Q 047737 64 VPHRSLKALSDRYGPIILVYFGN---------SPSLVVSSAEVASEMMK 103 (265)
Q Consensus 64 ~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~ 103 (265)
-....+.++..+||+|..+.+.. .-.|-..+++.++..+.
T Consensus 18 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 66 (89)
T 3ucg_A 18 ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 66 (89)
T ss_dssp CCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGG
T ss_pred CCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHh
Confidence 34566788899999988876531 24677788888888873
No 147
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.87 E-value=1.1e+02 Score=18.63 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=36.4
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeC-------CccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG-------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~~ 104 (265)
--++|++. ..-....+.++..+||+|..+.+. +.-.|-..+++.+...+..
T Consensus 17 ~l~V~nlp---~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cq3_A 17 RLHVSNIP---FRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 74 (103)
T ss_dssp EEEEESCC---TTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCC---CCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHH
Confidence 34556664 234456688889999999888763 2357778899999988864
No 148
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=26.78 E-value=98 Score=17.94 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=35.8
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
.-++|++.. .-....+.++..+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 9 ~l~V~nl~~---~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 9 VLYVGGLAE---EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp EEEEECCCT---TCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCC---CCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH
Confidence 445566542 34456788889999999888762 2246788899999888743
No 149
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=26.67 E-value=1.3e+02 Score=21.45 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=36.7
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
--++|++. ..-..+.+.++.++||+|..+.+. |.-.|-..+++.+...+..
T Consensus 17 tlfVgnLp---~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 17 SLYVGDLH---PDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp EEEEESCC---TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCC---CCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH
Confidence 34567765 234566788899999999887652 1247888899999888754
No 150
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=26.63 E-value=1.2e+02 Score=18.95 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=35.8
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeCC---------ccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGN---------SPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~ 104 (265)
.-++|++. ..-....+.++..+||+|..+.+.. .-.|-..+++.+...+..
T Consensus 17 ~l~V~nlp---~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 17 HVFVGDLS---PEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp EEEEESCC---TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCC---CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 34456654 2344566888899999988877632 346778899999998854
No 151
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=26.59 E-value=1.4e+02 Score=19.77 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=31.1
Q ss_pred CchhHHHHHHhhcCCeEEEEeC--------CccEEEeccHHHHHHHHHh
Q 047737 64 VPHRSLKALSDRYGPIILVYFG--------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 64 ~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~~ 104 (265)
-....+.++.++||+|..+.+. |.-.|-..+++.+...+..
T Consensus 12 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~ 60 (166)
T 3md3_A 12 ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 60 (166)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHH
Confidence 3456678889999999888763 2357788899999988843
No 152
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=26.42 E-value=1.2e+02 Score=18.83 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=35.2
Q ss_pred ccccccccccCC-CchhHHHHHHhhcCCeEEEEe-CCccEEEeccHHHHHHHHHh
Q 047737 52 PIIGNLHQIVQN-VPHRSLKALSDRYGPIILVYF-GNSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 52 p~~G~~~~~~~~-~~~~~~~~~~~~yG~i~~~~~-~~~~~v~v~~p~~i~~il~~ 104 (265)
-++|++. .. -..+.+.++..+||+|..+.+ -+.-.|-..+++.+...+..
T Consensus 30 l~V~nl~---~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 30 VFIGNLN---TALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp EEECSCC---CSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHH
T ss_pred EEEeCCC---cccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 3456654 22 456678899999999887776 33456777888888888743
No 153
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=26.06 E-value=1.3e+02 Score=18.91 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=37.4
Q ss_pred CCCCccccccccc--cCCCchhHHHHHHhhcCCeEEEEeC----------CccEEEeccHHHHHHHHHh-cccccc
Q 047737 48 PPRLPIIGNLHQI--VQNVPHRSLKALSDRYGPIILVYFG----------NSPSLVVSSAEVASEMMKT-HDIAFS 110 (265)
Q Consensus 48 p~~~p~~G~~~~~--~~~~~~~~~~~~~~~yG~i~~~~~~----------~~~~v~v~~p~~i~~il~~-~~~~~~ 110 (265)
|...-++.|+..- ...+...-+.+...+||.|..+.+. |.-.|-..+++.+...... +...|.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4444555555421 0344567788888999998887763 1235667788887777644 444443
No 154
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.21 E-value=1.1e+02 Score=18.13 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=36.7
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeC-CccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG-NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-~~~~v~v~~p~~i~~il~~ 104 (265)
.-++|++. ..-....+.++..+||+|..+.+. +.-.|-..+++.+...+..
T Consensus 12 ~l~V~nLp---~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 12 KLHVGNIS---PTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 63 (92)
T ss_dssp EEEEESCC---SSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCC---CCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 34556664 234556788899999998888774 3457778899998888853
No 155
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=25.09 E-value=1.3e+02 Score=24.72 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=36.6
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
.-++|++.. .-....+.+++.+||+|..+.+. |.-+|...+++.+..++..
T Consensus 104 ~lfV~nL~~---~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 104 TLFVARVNY---DTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred EEEEeCCCC---CCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 445676642 33456788889999999888763 3357888899999888854
No 156
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.86 E-value=1.3e+02 Score=18.71 Aligned_cols=40 Identities=13% Similarity=0.287 Sum_probs=31.8
Q ss_pred chhHHHHHHhhcCCeEEEEeC----CccEEEeccHHHHHHHHHh
Q 047737 65 PHRSLKALSDRYGPIILVYFG----NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 65 ~~~~~~~~~~~yG~i~~~~~~----~~~~v~v~~p~~i~~il~~ 104 (265)
....+.+++.+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 30 te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 30 SKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp CHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh
Confidence 456788999999999888874 2357788899998888865
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=24.56 E-value=1.5e+02 Score=20.47 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=37.1
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHhc
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKTH 105 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~~ 105 (265)
--++|++.. .-....+.++..+||+|..+.+. |.-.|-..+++.+...+..+
T Consensus 15 ~l~V~nLp~---~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~ 75 (196)
T 1l3k_A 15 KLFIGGLSF---ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75 (196)
T ss_dssp EEEEESCCT---TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTC
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcC
Confidence 345666642 34556788899999998777652 13468889999999998653
No 158
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=24.49 E-value=1.2e+02 Score=18.33 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=33.8
Q ss_pred cccccccccCCCchhHHHHHHhhcCCeEEEEeC---CccEEEeccHHHHHHHHHh
Q 047737 53 IIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 53 ~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---~~~~v~v~~p~~i~~il~~ 104 (265)
++|++. ..-..+.+.++..+||.|..+.+. |.-.|-..+.+.+...+..
T Consensus 31 ~V~nlp---~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 31 YIGNIP---HFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp EEESCC---TTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred EEcCCC---cccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHH
Confidence 455554 234456788889999998887763 3356677888888887743
No 159
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=24.00 E-value=1.2e+02 Score=17.93 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=35.1
Q ss_pred ccccccccccCCCchhHHHHHHhhcCCeEEEEeC-------CccEEEeccHHHHHHHHHh
Q 047737 52 PIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG-------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 52 p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~-------~~~~v~v~~p~~i~~il~~ 104 (265)
-++|++. ..-....+.++..+||+|..+.+. +.-.|-..+++.+...+..
T Consensus 11 l~V~nlp---~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 11 IFVRNLP---FDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp EEECSCC---TTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCC---CCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHH
Confidence 3456664 234556788889999998887663 2346777899999888764
No 160
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=23.84 E-value=1.8e+02 Score=19.81 Aligned_cols=41 Identities=15% Similarity=0.299 Sum_probs=31.3
Q ss_pred CchhHHHHHHhhcC--CeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 64 VPHRSLKALSDRYG--PIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 64 ~~~~~~~~~~~~yG--~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
-..+.+.+++.+|| +|..+.+. |.-.|-..+++.+...+..
T Consensus 67 ~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 67 TTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp CCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 44566888899999 88888762 1247788899999998865
No 161
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=23.71 E-value=1.3e+02 Score=18.40 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=34.6
Q ss_pred ccccccccccCCCchhHHHHHHhhcCCeEEEEeC--------CccEEEeccHHHHHHHHHh
Q 047737 52 PIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG--------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 52 p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~~ 104 (265)
-+++++. ..-....+.++..+||+|..+.+. +.-.|-..+++.++..+..
T Consensus 32 l~V~nlp---~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 32 LLVSNLD---FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp EEEESCC---TTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCC---CCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3456554 234456678889999998777653 2346777899999888764
No 162
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.31 E-value=1.3e+02 Score=17.93 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=36.7
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeCC---------ccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGN---------SPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~ 104 (265)
.-+++++. ..-..+.+.++..+||+|..+.+.. .-.|-..+++.+...+..
T Consensus 18 ~l~V~nlp---~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 18 TVYVSNLP---FSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp SEEEESCC---TTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH
T ss_pred EEEEECCC---CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 44566665 2345566888899999998887732 347788999999888853
No 163
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=22.85 E-value=1.5e+02 Score=19.73 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=31.6
Q ss_pred CCchhHHHHHHhhcCCeEEEEeCC---------ccEEEeccHHHHHHHHHhc
Q 047737 63 NVPHRSLKALSDRYGPIILVYFGN---------SPSLVVSSAEVASEMMKTH 105 (265)
Q Consensus 63 ~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~~ 105 (265)
.-....+.+...+||+|..+.+.. .-.|-..+++.+...+..+
T Consensus 98 ~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 149 (167)
T 2cjk_A 98 DVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNK 149 (167)
T ss_dssp TCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCC
Confidence 344566888889999988877642 2467788999999988643
No 164
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=22.74 E-value=1.5e+02 Score=18.51 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=35.3
Q ss_pred ccccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 52 PIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 52 p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
-++|++. ..-....+.++..+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 29 l~V~nLp---~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 87 (108)
T 2jrs_A 29 LYVGSLH---FNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 87 (108)
T ss_dssp EEEECCC---SSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCC---CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3456654 234556688889999998877663 2346778899999988853
No 165
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.70 E-value=1.5e+02 Score=18.49 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=35.5
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeCC--------ccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGN--------SPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~--------~~~v~v~~p~~i~~il~~ 104 (265)
.-+++++.. .-..+.+.++..+||+|..+.+.. .-.|-..+++.+...+..
T Consensus 17 ~l~V~nlp~---~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 17 TVFVANLDY---KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 344566642 345567888999999988776532 346777899998888763
No 166
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=22.45 E-value=1.3e+02 Score=17.97 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=31.1
Q ss_pred CchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 64 VPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 64 ~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
-....+.++..+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 14 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 14 QTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 63 (96)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3456688889999999888873 2346778899999888853
No 167
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=22.35 E-value=1.2e+02 Score=17.57 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=31.0
Q ss_pred CchhHHHHHHhhcCCeEEEEeC----------CccEEEeccHHHHHHHHHh
Q 047737 64 VPHRSLKALSDRYGPIILVYFG----------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 64 ~~~~~~~~~~~~yG~i~~~~~~----------~~~~v~v~~p~~i~~il~~ 104 (265)
-....+.++..+||+|..+.+. |.-.|-..+++.+...+..
T Consensus 16 ~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 16 VTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHH
Confidence 3456678888999999887762 2347788899999988864
No 168
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.11 E-value=1.4e+02 Score=18.01 Aligned_cols=58 Identities=10% Similarity=0.162 Sum_probs=39.4
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHhccccccC
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKTHDIAFSN 111 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~~~~~~~~ 111 (265)
--++|++. ..-....+.++..+||+|..+.+. |.-.|-..+++.+...+..+...+..
T Consensus 12 ~l~V~nlp---~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g 78 (99)
T 2dgs_A 12 KIFVGGIP---HNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 78 (99)
T ss_dssp EEEEESCC---SSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSS
T ss_pred EEEEeCCC---CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECC
Confidence 34456654 234556688889999999888773 23467789999999988644444433
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=22.07 E-value=2.1e+02 Score=20.10 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=32.2
Q ss_pred CchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 64 VPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 64 ~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
-..+.+.++.++||+|..+.+. |.-.|-..+++.+...+..
T Consensus 40 ~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 89 (216)
T 2qfj_A 40 LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 89 (216)
T ss_dssp CCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHH
Confidence 4456788899999999888773 2357888999999999863
No 170
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=21.65 E-value=1.8e+02 Score=19.24 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=31.0
Q ss_pred CchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 64 VPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 64 ~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
-..+.+.++.++||+|..+.+. |.-.|-..+++.+...+..
T Consensus 14 ~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 63 (167)
T 1fxl_A 14 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63 (167)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHH
Confidence 3456678889999998887663 2346778999999998863
No 171
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.28 E-value=1.5e+02 Score=17.94 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=35.9
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeC--------CccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG--------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~--------~~~~v~v~~p~~i~~il~~ 104 (265)
.-++|++.. .-..+.+.++..+||+|..+.+. +.-.|-..+++.+...+..
T Consensus 19 ~l~v~nlp~---~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 19 KLFISGLPF---SCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp CEEEESCCT---TCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC---CCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHH
Confidence 344566542 34456688889999998887763 2347778899999888854
No 172
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=21.27 E-value=1.9e+02 Score=19.31 Aligned_cols=51 Identities=20% Similarity=0.164 Sum_probs=36.4
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeC---------CccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
.-+++++. ..-....+.+++.+||+|..+.+. +.-.|-..+++.+..++..
T Consensus 41 ~l~V~nlp---~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 41 TLYVGNLS---FYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp EEEEESCC---TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCC---CCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 34456654 234556788999999999888772 1237778899999998864
No 173
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.10 E-value=1.5e+02 Score=18.17 Aligned_cols=50 Identities=10% Similarity=0.029 Sum_probs=35.7
Q ss_pred ccccccccccCCCchhHHHHHHhhcCC-eEEEEeC----------CccEEEeccHHHHHHHHHh
Q 047737 52 PIIGNLHQIVQNVPHRSLKALSDRYGP-IILVYFG----------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 52 p~~G~~~~~~~~~~~~~~~~~~~~yG~-i~~~~~~----------~~~~v~v~~p~~i~~il~~ 104 (265)
-++|++. ..-..+.+.++..+||+ |..+.+. |.-.|-..+++.+...+..
T Consensus 11 l~V~nLp---~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 11 LFIGGIP---KMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp EEEECCC---TTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred EEEeCCC---CcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 3456654 23445677888999997 8888775 2346777899999988854
No 174
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.84 E-value=1.6e+02 Score=18.37 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=36.7
Q ss_pred ccccccccccCCCchhHHHHHHhhcCCeEEEEeCC---------ccEEEeccHHHHHHHHHhc
Q 047737 52 PIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGN---------SPSLVVSSAEVASEMMKTH 105 (265)
Q Consensus 52 p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~---------~~~v~v~~p~~i~~il~~~ 105 (265)
-+++++. ..-..+.+.++..+||+|..+.+.. .-.|-..+++.++..+...
T Consensus 20 l~V~nlp---~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~ 79 (116)
T 2cqd_A 20 IFVGGLP---YHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 79 (116)
T ss_dssp EEEECCC---SSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCS
T ss_pred EEEeCCC---CCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhC
Confidence 3456654 2345566888899999998887743 2467789999999988553
No 175
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.68 E-value=1.5e+02 Score=17.87 Aligned_cols=50 Identities=20% Similarity=0.126 Sum_probs=36.4
Q ss_pred CccccccccccCCCchhHHHHHHhhc--CCeEEEEeC-CccEEEeccHHHHHHHHH
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRY--GPIILVYFG-NSPSLVVSSAEVASEMMK 103 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~y--G~i~~~~~~-~~~~v~v~~p~~i~~il~ 103 (265)
.-++|++. ..-....+.++..+| |.|..+.+. +.-.|-..+++.+...+.
T Consensus 17 ~l~V~nLp---~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~ 69 (99)
T 2cpd_A 17 ILYVRNLM---LSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMK 69 (99)
T ss_dssp EEEEESCC---TTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCC---CCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHH
Confidence 34556654 234556688889999 888888763 456788899999988886
No 176
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.64 E-value=1.6e+02 Score=18.27 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=34.6
Q ss_pred ccccccccccCCCchhHHHHHHhhcCCeEEEEeCC--------ccEEEeccHHHHHHHHHh
Q 047737 52 PIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFGN--------SPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 52 p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~--------~~~v~v~~p~~i~~il~~ 104 (265)
-++|++. ..-....+.++..+||+|..+.+.. .-.|-..+++.+...+..
T Consensus 28 l~V~nlp---~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 85 (114)
T 1x5o_A 28 LYISNLP---LSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 85 (114)
T ss_dssp EEEESCC---TTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCC---CCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3456654 2344566888889999988877632 346677899998888863
No 177
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=20.49 E-value=1.5e+02 Score=17.84 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=33.8
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEE--------EEeC---------CccEEEeccHHHHHHHHHh
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIIL--------VYFG---------NSPSLVVSSAEVASEMMKT 104 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~--------~~~~---------~~~~v~v~~p~~i~~il~~ 104 (265)
.-++|++. ..-..+.+.++..+||.|.. +.+. |.-.|-..+++.++..+..
T Consensus 15 ~l~V~nLp---~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 15 TIFVQGLG---ENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp EEEEECCC---SSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHH
T ss_pred EEEEeCCC---CCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 34566664 23455678888999998765 4432 1246777899988888753
No 178
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.28 E-value=1.6e+02 Score=17.97 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=36.0
Q ss_pred CccccccccccCCCchhHHHHHHhhcCCeEEEEeC----------CccEEEeccHHHHHHHHHhccc
Q 047737 51 LPIIGNLHQIVQNVPHRSLKALSDRYGPIILVYFG----------NSPSLVVSSAEVASEMMKTHDI 107 (265)
Q Consensus 51 ~p~~G~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~----------~~~~v~v~~p~~i~~il~~~~~ 107 (265)
--++|++. ..-..+.+.++..+|| |..+.+. |.-.|-..+++.++..+.-+..
T Consensus 17 ~l~V~nlp---~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~ 79 (104)
T 1wi8_A 17 TAFLGNLP---YDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEE 79 (104)
T ss_dssp EEEEESCC---SSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTC
T ss_pred EEEEeCCC---CcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCC
Confidence 34456664 2345566888899999 8888763 1246778899999988833333
Done!