BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047738
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 108/264 (40%), Gaps = 41/264 (15%)
Query: 124 INGRGLFDGNGQ--------KWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVER 175
I G G DG G WW+ + K + P + + N + + +
Sbjct: 113 IYGPGTIDGQGGVKLQDKKVSWWELAADAKV-KKLKQNTPRLIQINKSKNFTLYNVSLIN 171
Query: 176 SPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIA----------- 224
SP H+V I +P T+ NTDGI S ++++ S IA
Sbjct: 172 SPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAY 231
Query: 225 ---------AVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQA 275
++ + + G GHG+SIGS E + V N+TV + TTNG RIK+ ++
Sbjct: 232 KGRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKSDKS 286
Query: 276 GKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDV 335
G V V +S + V PI+ID Y ++ + + DV TS T
Sbjct: 287 AAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPDWSDITFKDV-------TSETKG 339
Query: 336 AINLDCSNNVACTDIKLENIELQS 359
+ L+ N ++ ++N++L S
Sbjct: 340 VVVLNGENAKKPIEVTMKNVKLTS 363
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 105/251 (41%), Gaps = 27/251 (10%)
Query: 129 LFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQD 188
+ DG+G +WWD G + + P + + I ++ +P I V + +
Sbjct: 79 VIDGDGSRWWDS-----KGTNGGKTKPKFMYIHDVEDSTFKGINIKNTPVQAISV-QATN 132
Query: 189 VHFKSLIIDSPETSPN----TDGIHIARSHDVSVHTSIIA--------------AVTYVN 230
VH ID+ + N TDG I+ S V + + + + T
Sbjct: 133 VHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSGESISFTGGT 192
Query: 231 CGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNF 290
C GHG+SIGS+G ++ V+N+T+ + NG RIKT G V + +S +
Sbjct: 193 CSGGHGLSIGSVGGR-DDNTVKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQL 251
Query: 291 TEVQN-PIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINLDCSNNVACTD 349
+ + + I+I+Q Y + STG+ I+DV TGT D + +C+D
Sbjct: 252 SGITDYGIVIEQDY-ENGSPTGTPSTGIPITDVTVDGVTGTLEDDATQVYILCGDGSCSD 310
Query: 350 IKLENIELQSA 360
++L
Sbjct: 311 WTWSGVDLSGG 321
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 123/272 (45%), Gaps = 40/272 (14%)
Query: 129 LFDGNGQKWWDQSCKHHPGKDCS-ERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQ 187
L + +G +WWD GK S ++ P ++ I + ++ +P + V +
Sbjct: 106 LINCDGARWWD-------GKGTSGKKKPKFFYAHGLDSSSITGLNIKNTPLMAFSVQ-AN 157
Query: 188 DVHFKSLIIDSPETSPNTDGIHIARSHDV--SVHTSIIAAVTY-------VNCGP----- 233
D+ F + I++ + +T G H + DV SV +II + VN G
Sbjct: 158 DITFTDVTINNAD--GDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSGENIWFT 215
Query: 234 ------GHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSY 287
GHG+SIGS+G V V+N+T+ H + N RIKT G V + +S
Sbjct: 216 GGTCIGGHGLSIGSVGDRSNNV-VKNVTIEHSTVSNSENAVRIKTISGATGSVSEITYSN 274
Query: 288 MNFTEVQN-PIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGT-SATDVAINLDCSNNV 345
+ + + + ++I Q Y D K K + GV I DV+ + TG+ + I L C +
Sbjct: 275 IVMSGISDYGVVIQQDYEDGKPT-GKPTNGVTIQDVKLESVTGSVDSGATEIYLLCGSG- 332
Query: 346 ACTDIKLENIELQSATEGKGVLSSCKNAFGVA 377
+C+D +++++ + ++CKN VA
Sbjct: 333 SCSDWTWDDVKVTGGKKS----TACKNFPSVA 360
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 147/372 (39%), Gaps = 60/372 (16%)
Query: 28 TFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSS 87
T N+L+YGAV + ++D A AW ACK+ + IP G L +T +G S
Sbjct: 20 TCNILSYGAVADNSTDVGPAITSAWA-ACKSGGL---VYIPSGNYALNTWVTLTG---GS 72
Query: 88 NISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLNI---NGRGLFDGNGQKWWDQSCKH 144
+IQL G I S G IA + T + +G G G + H
Sbjct: 73 ATAIQLDGIIYRTGTAS------GNMIAVTDTTDFELFSSTSKGAVQGFGYVY------H 120
Query: 145 HPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPN 204
G + + +++I + +P H +D D ++ I
Sbjct: 121 AEGT----YGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGNEG-G 175
Query: 205 TDGIHIARS----HDVSV------------HTSIIAAVTYVNCGPGHGISIGSLGKNGEE 248
DGI + S HDV V +I+ Y C G ++GSLG +
Sbjct: 176 LDGIDVWGSNIWVHDVEVTNKDECVTVKSPANNILVESIY--CNWSGGCAMGSLGA---D 230
Query: 249 VKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNP--IIIDQYYCDQ 306
V +I R+V + IK+ G G V +V NF N + ID Y+
Sbjct: 231 TDVTDIVYRNVYTWSSNQMYMIKS-NGGSGTVSNVLLE--NFIGHGNAYSLDIDGYWSSM 287
Query: 307 KDVCAKTSTGVHISDVRYLNATGTS---ATDVAINLDCSNNVACTDIKLENIELQSATEG 363
V GV ++++ N GT AT I + CS+ CTD+ LE+I + + + G
Sbjct: 288 TAVAGD---GVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTES-G 343
Query: 364 KGVLSSCKNAFG 375
L C++A+G
Sbjct: 344 SSELYLCRSAYG 355
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 104/250 (41%), Gaps = 43/250 (17%)
Query: 119 ITGLNINGRG----LFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQ--CNNVHINEIY 172
I+G NI G + DGNGQ +WD + S + P +Q N I +
Sbjct: 66 ISGSNITITGASGHVIDGNGQAYWDGKGSNSN----SNQKPDHFIVVQKTTGNSKITNLN 121
Query: 173 VERSPQVHIVVDYSQDVHFKSLIID------------SPETSPNTDGIHIARSHDVSVH- 219
++ P + S + LI+D S + NTDG I+ S V++
Sbjct: 122 IQNWPVHCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDN 181
Query: 220 ---------------TSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKT 264
T+I+ + Y C GHG+SIGS+G + V V+ + +
Sbjct: 182 NHVYNQDDCVAVTSGTNIVVSNMY--CSGGHGLSIGSVGGKSDNV-VDGVQFLSSQVVNS 238
Query: 265 TNGARIKTWQAGKGQVQHVEFSYMNFTEVQN-PIIIDQYYCDQKDVCAKTSTGVHISDVR 323
NG RIK+ G + +V + + T + + + Q Y + K + GV IS+++
Sbjct: 239 QNGCRIKSNSGATGTINNVTYQNIALTNISTYGVDVQQDYLNGGPT-GKPTNGVKISNIK 297
Query: 324 YLNATGTSAT 333
++ TGT A+
Sbjct: 298 FIKVTGTVAS 307
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 58/225 (25%)
Query: 30 NVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNI 89
N+L++GA G+G +D S ++ +A + K +I+P+G FL PI SNI
Sbjct: 29 NLLDFGARGDGRTDCSESFKRAIEELSKQGGG--RLIVPEG-VFLTGPIHL-----KSNI 80
Query: 90 SIQLSGTIK-APDGPSAWTSEIGRW--IAFGNITGL---------NINGRGLFDGNG--Q 135
+ + GTIK PD + R+ I N + L I G G+ DG+ +
Sbjct: 81 ELHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNE 140
Query: 136 KWWDQSCKHHPG---------------KDCSERA---------------PTAVSFIQCNN 165
WW K G K+ +ER P+ V F +C N
Sbjct: 141 HWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRN 200
Query: 166 VHINEIYVERSPQ--VHIVVDYSQDVHFKSLIIDSPETSPNTDGI 208
V + + + SP +H V+ S++V +++ I S T PN DGI
Sbjct: 201 VLVEGVKIINSPMWCIHPVL--SENVIIRNIEISS--TGPNNDGI 241
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 107/253 (42%), Gaps = 38/253 (15%)
Query: 130 FDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDV 189
+G+G +WWD G + + P + N I+ + + SP V S +
Sbjct: 84 INGDGSRWWDG-----EGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYL 138
Query: 190 HFKSLIIDSPETSPNTDGIHIARSHDV--SVHTSIIAAVTY-------VN---------- 230
K + ID+ + N G H + D+ S + +I A Y VN
Sbjct: 139 TLKDITIDNSDGDDN--GGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSGENIYFSGG 196
Query: 231 -CGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMN 289
C GHG+SIGS+G + V+N+T + NG RIKT G V V + +
Sbjct: 197 YCSGGHGLSIGSVGGRSDNT-VKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDIT 255
Query: 290 FTEV-QNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATG---TSATDVAINLDCSNNV 345
T + + I++ Q Y D + +TGV I+D N G +S T++ I+ C +
Sbjct: 256 LTSIAKYGIVVQQNY---GDTSSTPTTGVPITDFVLDNVHGSVVSSGTNILIS--CGSG- 309
Query: 346 ACTDIKLENIELQ 358
+C+D ++ +
Sbjct: 310 SCSDWTWTDVSVS 322
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 112/269 (41%), Gaps = 31/269 (11%)
Query: 111 GRWIAFGNITGLNINGRG--LFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHI 168
G I+F T +NING D G +WWD G + + P + +I
Sbjct: 60 GPLISFSG-TNININGASGHSIDCQGSRWWDS-----KGSNGGKTKPKFFYAHSLKSSNI 113
Query: 169 NEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSP----NTDGIHIARSHDV-------- 216
+ V +P ++ + + +IID+ NTD + S V
Sbjct: 114 KGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVK 173
Query: 217 ------SVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARI 270
++++ T C GHG+SIGS+G + V+ +T+ + + NG RI
Sbjct: 174 NQDDCLAINSGTNITFTGGTCSGGHGLSIGSVGGRSDNT-VKTVTISNSKIVNSDNGVRI 232
Query: 271 KTWQAGKGQVQHVEFSYMNFTEV-QNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATG 329
KT G V V +S + + + + I+I+Q Y + T+ GV I+ + TG
Sbjct: 233 KTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTN-GVPITGLTLSKITG 291
Query: 330 TSATD-VAINLDCSNNVACTDIKLENIEL 357
+ A+ + + C++ AC++ K + +
Sbjct: 292 SVASSGTNVYILCASG-ACSNWKWSGVSV 319
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 114/306 (37%), Gaps = 55/306 (17%)
Query: 65 MIIPKGKTFLVHPITFSGPCKSSNISIQ---LSGTIKAPDGPSAWTSEIGRWIAFGNITG 121
+P G T +++P + + +I+ L G + DG TG
Sbjct: 25 FTVPAGNTLVLNPDKGATVTMAGDITFAKTTLDGPLFTIDG-----------------TG 67
Query: 122 LNINGRG-LFDGNGQKWWD----QSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERS 176
+N G +FDGNG +WD + H P + + N I V +
Sbjct: 68 INFVGADHIFDGNGALYWDGKGTNNGTHKPHPFLKIKGSGTYKKFEVLNSPAQAISVGPT 127
Query: 177 PQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA----------- 225
H+ +D + D+ NTDG ++ +++V++ I+
Sbjct: 128 -DAHLTLD---GITVDDFAGDTKNLGHNTDGFDVS-ANNVTIQNCIVKNQDDCIAINDGN 182
Query: 226 -VTYVN--CGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQ-AGKGQVQ 281
+ + N C GHGISIGS+ V N+ ++ ++ G RIK + A V
Sbjct: 183 NIRFENNQCSGGHGISIGSIATGKH---VSNVVIKGNTVTRSMYGVRIKAQRTATSASVS 239
Query: 282 HVEFSYMNFTEV-QNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVA---I 337
V + + + + ++I Q Y D TG SDV + T + A +
Sbjct: 240 GVTYDANTISGIAKYGVLISQSYPDD---VGNPGTGAPFSDVNFTGGATTIKVNNAATRV 296
Query: 338 NLDCSN 343
++C N
Sbjct: 297 TVECGN 302
>pdb|3EQN|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQN|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQO|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
pdb|3EQO|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
Length = 758
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 30 NVLNYGAVGNGNSDDSLAYAKAWN------DACKANAQTPTMI-IPKGKTFLVHPI 78
NV NYGA G+GN+DD+ A A N C + P ++ P G + P+
Sbjct: 51 NVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVSSPL 106
>pdb|1H80|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1H80|B Chain B, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1KTW|A Chain A, Iota-carrageenase Complexed To Iota-carrageenan Fragments
pdb|1KTW|B Chain B, Iota-carrageenase Complexed To Iota-carrageenan Fragments
Length = 464
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 31 VLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNIS 90
V ++GA GN SDDS A +A N A T++IP G F G SN+
Sbjct: 25 VDDFGANGNDTSDDSNALQRAIN-AISRKPNGGTLLIPNG------TYHFLGIQMKSNVH 77
Query: 91 IQL-SGTIKAP----DGPSAWTSEIG 111
I++ S I P DG + E+G
Sbjct: 78 IRVESDVIIKPTWNGDGKNHRLFEVG 103
>pdb|3LMW|A Chain A, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
pdb|3LMW|B Chain B, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
Length = 473
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 31 VLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNIS 90
V ++GA GN SDDS A +A N A T++IP G F G SN+
Sbjct: 26 VDDFGANGNDTSDDSNALQRAIN-AISRKPNGGTLLIPNG------TYHFLGIQMKSNVH 78
Query: 91 IQL-SGTIKAP----DGPSAWTSEIG 111
I++ S I P DG + E+G
Sbjct: 79 IRVESDVIIKPTWNGDGKNHRLFEVG 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,781,123
Number of Sequences: 62578
Number of extensions: 566026
Number of successful extensions: 1221
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1197
Number of HSP's gapped (non-prelim): 14
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)