Query 047738
Match_columns 391
No_of_seqs 171 out of 1617
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 02:38:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 3.9E-72 8.4E-77 553.2 47.6 357 25-388 49-424 (443)
2 PLN03010 polygalacturonase 100.0 8E-71 1.7E-75 536.6 47.1 349 25-391 43-407 (409)
3 PLN02155 polygalacturonase 100.0 1E-70 2.3E-75 534.8 44.6 355 24-388 23-393 (394)
4 PLN02218 polygalacturonase ADP 100.0 1.5E-69 3.3E-74 532.4 44.3 349 24-387 63-431 (431)
5 PLN03003 Probable polygalactur 100.0 1.5E-69 3.2E-74 530.5 43.9 355 24-390 19-392 (456)
6 PLN02188 polygalacturonase/gly 100.0 1.6E-68 3.4E-73 521.8 43.1 352 25-387 33-404 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 1.8E-51 3.8E-56 396.0 30.3 303 61-376 5-323 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 1.9E-36 4.2E-41 300.9 26.1 260 25-300 79-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 5.9E-24 1.3E-28 205.3 25.5 258 24-332 33-338 (455)
10 PF12708 Pectate_lyase_3: Pect 99.8 2.3E-19 4.9E-24 163.8 20.4 213 28-297 1-224 (225)
11 PLN03003 Probable polygalactur 99.8 3.9E-16 8.5E-21 154.0 28.1 192 156-372 105-343 (456)
12 PLN02218 polygalacturonase ADP 99.8 2.9E-16 6.3E-21 155.3 26.8 192 156-372 148-394 (431)
13 PLN02155 polygalacturonase 99.8 9.2E-16 2E-20 150.1 28.9 191 157-371 108-348 (394)
14 PLN03010 polygalacturonase 99.8 1.3E-15 2.9E-20 149.3 29.3 191 157-372 132-360 (409)
15 PLN02793 Probable polygalactur 99.7 1.5E-15 3.2E-20 151.0 27.2 204 88-332 144-397 (443)
16 PF03718 Glyco_hydro_49: Glyco 99.7 9.8E-16 2.1E-20 149.8 24.4 215 62-300 232-497 (582)
17 PLN02188 polygalacturonase/gly 99.7 3E-15 6.5E-20 147.1 27.3 206 88-332 123-377 (404)
18 PF00295 Glyco_hydro_28: Glyco 99.7 5.6E-15 1.2E-19 142.6 25.2 193 155-372 51-294 (326)
19 TIGR03805 beta_helix_1 paralle 99.6 3E-14 6.4E-19 136.5 22.3 232 48-340 1-250 (314)
20 PRK10123 wcaM putative colanic 99.2 1.1E-09 2.3E-14 99.8 19.1 242 6-291 12-283 (464)
21 COG5434 PGU1 Endopygalactoruna 99.1 2.9E-09 6.2E-14 107.2 15.3 140 177-332 237-398 (542)
22 PF03718 Glyco_hydro_49: Glyco 98.6 1.3E-05 2.8E-10 79.7 23.2 229 62-331 256-553 (582)
23 TIGR03805 beta_helix_1 paralle 98.5 1.2E-05 2.6E-10 77.3 19.0 195 112-333 78-284 (314)
24 PF07602 DUF1565: Protein of u 98.4 2E-05 4.4E-10 72.3 16.4 41 45-95 15-60 (246)
25 PF13229 Beta_helix: Right han 98.3 3E-06 6.5E-11 72.2 9.1 118 157-301 2-121 (158)
26 PF14592 Chondroitinas_B: Chon 98.3 4.1E-05 8.8E-10 75.1 17.7 209 44-287 3-234 (425)
27 PF12541 DUF3737: Protein of u 98.3 7.3E-06 1.6E-10 74.5 10.3 114 160-294 94-226 (277)
28 PF12541 DUF3737: Protein of u 98.2 1.8E-05 3.8E-10 72.0 12.5 90 158-270 131-231 (277)
29 PLN02176 putative pectinestera 98.2 0.00037 8E-09 67.1 22.3 48 44-95 50-97 (340)
30 COG3866 PelB Pectate lyase [Ca 98.2 0.00021 4.6E-09 66.2 18.8 142 89-264 77-229 (345)
31 PLN02634 probable pectinestera 98.1 0.00071 1.5E-08 65.4 21.7 48 44-95 67-114 (359)
32 TIGR03808 RR_plus_rpt_1 twin-a 98.1 0.00054 1.2E-08 67.5 19.7 160 111-292 135-337 (455)
33 PLN02480 Probable pectinestera 98.1 0.00029 6.4E-09 68.0 17.4 48 43-94 58-105 (343)
34 PF05048 NosD: Periplasmic cop 98.1 0.00019 4.2E-09 66.1 15.6 114 157-299 37-151 (236)
35 PF13229 Beta_helix: Right han 98.0 0.00011 2.3E-09 62.5 11.8 119 156-299 24-144 (158)
36 PLN02682 pectinesterase family 98.0 0.00097 2.1E-08 64.8 19.2 49 43-95 80-128 (369)
37 PLN02497 probable pectinestera 97.9 0.0016 3.4E-08 62.6 20.0 48 44-95 43-90 (331)
38 PF05048 NosD: Periplasmic cop 97.9 0.00048 1E-08 63.4 15.2 117 156-301 14-130 (236)
39 PLN02665 pectinesterase family 97.9 0.0025 5.5E-08 62.0 19.9 48 44-95 79-126 (366)
40 PLN02773 pectinesterase 97.8 0.0018 3.8E-08 62.0 17.5 60 160-225 98-162 (317)
41 PLN02671 pectinesterase 97.7 0.0063 1.4E-07 59.0 19.3 48 44-95 70-117 (359)
42 PLN02432 putative pectinestera 97.7 0.0099 2.1E-07 56.3 20.0 47 44-94 22-68 (293)
43 COG3866 PelB Pectate lyase [Ca 97.7 0.00091 2E-08 62.1 12.5 129 157-293 94-229 (345)
44 PRK10531 acyl-CoA thioesterase 97.6 0.0099 2.2E-07 58.7 19.7 68 158-225 200-282 (422)
45 smart00656 Amb_all Amb_all dom 97.6 0.0084 1.8E-07 53.4 17.3 41 158-198 34-80 (190)
46 COG3420 NosD Nitrous oxidase a 97.5 0.03 6.5E-07 53.1 21.0 128 111-270 69-199 (408)
47 PLN02170 probable pectinestera 97.5 0.011 2.5E-07 60.0 18.9 48 44-95 236-284 (529)
48 PF01095 Pectinesterase: Pecti 97.4 0.0026 5.7E-08 60.6 13.2 131 43-225 10-147 (298)
49 PLN02201 probable pectinestera 97.4 0.01 2.2E-07 60.5 17.4 131 44-225 217-353 (520)
50 PLN02933 Probable pectinestera 97.4 0.013 2.8E-07 59.8 17.8 131 44-225 229-365 (530)
51 PLN02708 Probable pectinestera 97.3 0.01 2.2E-07 61.2 17.0 182 44-293 252-449 (553)
52 smart00656 Amb_all Amb_all dom 97.3 0.012 2.5E-07 52.5 15.2 106 180-293 33-144 (190)
53 PLN02416 probable pectinestera 97.3 0.017 3.6E-07 59.4 18.2 131 44-225 241-377 (541)
54 PLN02304 probable pectinestera 97.3 0.022 4.7E-07 55.6 17.6 132 44-225 86-227 (379)
55 PLN02468 putative pectinestera 97.3 0.019 4.1E-07 59.4 18.2 48 44-95 269-316 (565)
56 PLN02301 pectinesterase/pectin 97.3 0.026 5.6E-07 58.0 19.0 48 44-95 247-294 (548)
57 PLN02484 probable pectinestera 97.3 0.016 3.4E-07 60.2 17.4 132 44-225 283-420 (587)
58 PLN02197 pectinesterase 97.2 0.027 5.8E-07 58.3 18.8 58 162-225 362-424 (588)
59 PLN02713 Probable pectinestera 97.2 0.024 5.2E-07 58.6 18.2 62 157-225 334-400 (566)
60 PLN02745 Putative pectinestera 97.2 0.018 4E-07 59.8 17.3 131 44-225 296-432 (596)
61 PLN02995 Probable pectinestera 97.2 0.029 6.3E-07 57.7 18.4 48 44-95 234-283 (539)
62 PLN02488 probable pectinestera 97.2 0.029 6.2E-07 56.7 17.7 132 43-225 207-344 (509)
63 PF12218 End_N_terminal: N ter 97.2 0.00038 8.3E-09 48.6 3.0 38 36-78 1-38 (67)
64 PLN02217 probable pectinestera 97.2 0.033 7.2E-07 58.4 18.5 123 163-293 336-486 (670)
65 PLN02314 pectinesterase 97.1 0.036 7.8E-07 57.6 18.4 48 44-95 289-336 (586)
66 PLN02506 putative pectinestera 97.1 0.033 7.2E-07 57.1 17.3 132 44-225 243-379 (537)
67 PLN03043 Probable pectinestera 97.1 0.072 1.6E-06 54.8 19.7 130 44-225 234-373 (538)
68 PLN02916 pectinesterase family 97.1 0.039 8.4E-07 55.9 17.4 59 161-225 274-337 (502)
69 PF00544 Pec_lyase_C: Pectate 97.0 0.0059 1.3E-07 54.8 10.3 99 158-264 39-158 (200)
70 PLN02313 Pectinesterase/pectin 97.0 0.051 1.1E-06 56.5 18.0 131 44-225 286-422 (587)
71 PLN02990 Probable pectinestera 96.9 0.047 1E-06 56.6 17.2 132 44-225 270-407 (572)
72 PF12708 Pectate_lyase_3: Pect 96.9 0.086 1.9E-06 47.5 17.1 120 166-327 94-220 (225)
73 PF01696 Adeno_E1B_55K: Adenov 96.6 0.35 7.5E-06 47.3 19.2 36 48-95 57-93 (386)
74 COG3420 NosD Nitrous oxidase a 96.4 0.089 1.9E-06 49.9 13.2 102 157-273 71-180 (408)
75 PF00544 Pec_lyase_C: Pectate 96.0 0.022 4.7E-07 51.2 7.2 105 180-293 38-158 (200)
76 COG4677 PemB Pectin methyleste 95.1 3.2 7E-05 39.5 18.8 39 162-200 187-234 (405)
77 PF07602 DUF1565: Protein of u 92.4 5.6 0.00012 36.8 14.2 101 186-301 96-196 (246)
78 TIGR03804 para_beta_helix para 92.0 0.29 6.3E-06 32.1 4.0 39 181-224 2-40 (44)
79 PLN02773 pectinesterase 89.7 8.6 0.00019 37.0 13.1 47 44-94 16-62 (317)
80 PF14592 Chondroitinas_B: Chon 89.6 1.7 3.6E-05 43.3 8.4 111 157-272 217-330 (425)
81 PRK10123 wcaM putative colanic 87.6 4.1 8.8E-05 38.2 8.9 61 164-225 246-312 (464)
82 PLN02634 probable pectinestera 87.2 16 0.00034 35.8 13.2 62 157-225 143-214 (359)
83 PLN02468 putative pectinestera 85.1 24 0.00051 36.9 14.1 38 163-200 344-386 (565)
84 PF09251 PhageP22-tail: Salmon 85.1 4.3 9.3E-05 40.0 8.0 8 48-55 20-27 (549)
85 PF01696 Adeno_E1B_55K: Adenov 84.4 30 0.00064 34.2 13.5 57 163-225 120-177 (386)
86 PLN02170 probable pectinestera 82.1 26 0.00057 36.1 12.7 60 160-225 309-373 (529)
87 PLN02698 Probable pectinestera 80.5 25 0.00054 36.1 12.0 62 157-225 264-330 (497)
88 PLN02713 Probable pectinestera 80.4 18 0.0004 37.7 11.2 98 185-293 338-455 (566)
89 PLN02301 pectinesterase/pectin 79.9 27 0.00059 36.3 12.1 59 161-225 320-383 (548)
90 TIGR03804 para_beta_helix para 79.5 4.8 0.0001 26.2 4.5 40 158-198 2-41 (44)
91 PLN03043 Probable pectinestera 79.5 30 0.00065 35.9 12.3 100 183-293 309-428 (538)
92 PLN02665 pectinesterase family 79.3 35 0.00076 33.5 12.1 61 159-225 149-219 (366)
93 PLN02416 probable pectinestera 78.9 29 0.00063 36.0 12.0 99 184-293 314-432 (541)
94 PLN02217 probable pectinestera 78.6 28 0.00061 37.0 11.9 98 185-293 335-452 (670)
95 PLN02176 putative pectinestera 78.5 29 0.00062 33.8 11.2 62 157-225 116-188 (340)
96 PLN02304 probable pectinestera 78.3 67 0.0014 31.8 13.7 99 184-292 159-286 (379)
97 PLN02432 putative pectinestera 77.8 44 0.00096 31.8 12.0 59 161-225 91-153 (293)
98 PLN02314 pectinesterase 77.7 32 0.00069 36.1 12.0 58 162-225 363-425 (586)
99 PLN02708 Probable pectinestera 77.2 90 0.0019 32.6 15.0 118 163-292 357-486 (553)
100 PLN02671 pectinesterase 76.7 46 0.00099 32.7 12.0 60 160-225 150-218 (359)
101 PF01095 Pectinesterase: Pecti 76.0 17 0.00037 34.7 8.9 99 184-293 84-202 (298)
102 PLN02995 Probable pectinestera 75.6 38 0.00083 35.2 11.8 37 163-199 311-352 (539)
103 PRK10531 acyl-CoA thioesterase 74.8 49 0.0011 33.2 11.8 44 182-225 201-249 (422)
104 PLN02201 probable pectinestera 73.6 1.2E+02 0.0025 31.5 15.2 100 183-293 289-408 (520)
105 PLN02197 pectinesterase 73.1 50 0.0011 34.7 12.0 99 184-293 361-480 (588)
106 PLN02745 Putative pectinestera 71.6 76 0.0016 33.5 12.9 99 184-293 369-487 (596)
107 PLN02933 Probable pectinestera 71.0 1.4E+02 0.0029 31.1 15.1 100 183-293 301-420 (530)
108 PLN02484 probable pectinestera 70.2 1.5E+02 0.0032 31.3 15.0 100 183-293 356-475 (587)
109 PLN02916 pectinesterase family 69.6 1.4E+02 0.0031 30.7 14.7 215 44-293 198-426 (502)
110 PF08480 Disaggr_assoc: Disagg 68.5 84 0.0018 27.7 10.4 45 213-266 33-78 (198)
111 PLN02698 Probable pectinestera 65.7 1.4E+02 0.0029 30.9 13.1 99 184-293 267-385 (497)
112 PLN02506 putative pectinestera 63.5 1.1E+02 0.0024 31.8 12.1 100 182-292 314-433 (537)
113 PF08480 Disaggr_assoc: Disagg 63.2 1.1E+02 0.0023 27.0 10.3 78 215-299 3-82 (198)
114 PLN02990 Probable pectinestera 61.4 1.3E+02 0.0029 31.5 12.3 100 184-294 344-463 (572)
115 KOG1777 Putative Zn-finger pro 59.7 2E+02 0.0043 29.0 13.1 41 47-94 34-74 (625)
116 PF09251 PhageP22-tail: Salmon 58.9 37 0.0008 33.8 7.1 36 252-289 311-346 (549)
117 smart00710 PbH1 Parallel beta- 54.8 13 0.00028 20.2 2.2 20 253-272 3-23 (26)
118 PF03211 Pectate_lyase: Pectat 53.3 1.8E+02 0.0038 26.4 15.2 136 156-327 55-195 (215)
119 PLN02488 probable pectinestera 42.5 4E+02 0.0088 27.5 14.8 100 184-294 281-400 (509)
120 PF15240 Pro-rich: Proline-ric 39.9 15 0.00033 32.0 1.2 21 6-26 1-22 (179)
121 PF03211 Pectate_lyase: Pectat 36.0 3.3E+02 0.0072 24.6 11.2 132 187-354 61-194 (215)
122 PF08830 DUF1806: Protein of u 31.3 1.1E+02 0.0024 24.5 4.6 72 44-128 4-89 (114)
123 COG0336 TrmD tRNA-(guanine-N1) 27.1 53 0.0011 30.0 2.5 49 26-76 33-95 (240)
124 PLN02480 Probable pectinestera 26.4 6.2E+02 0.013 24.7 17.0 63 156-225 125-197 (343)
125 PF10162 G8: G8 domain; Inter 25.1 2.6E+02 0.0056 22.7 6.2 36 61-102 11-46 (125)
126 PF11429 Colicin_D: Colicin D; 21.7 95 0.0021 24.1 2.7 38 32-75 10-48 (92)
127 PF07986 TBCC: Tubulin binding 20.1 4.6E+02 0.01 21.0 9.3 12 114-125 23-34 (120)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=3.9e-72 Score=553.19 Aligned_cols=357 Identities=40% Similarity=0.816 Sum_probs=326.3
Q ss_pred CCceEEEeccCccCCCCchhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCC
Q 047738 25 DQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPS 104 (391)
Q Consensus 25 ~~~~~~v~dfGa~~dg~tddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~ 104 (391)
..++++|+||||+|||.+|||+|||+||++||+.. +|++|+||+|++|++++|.|.|+||| +++|+++|+|+++.++.
T Consensus 49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~-ggg~v~vP~G~~fl~~~i~l~gpcks-~vtL~l~g~l~~~~d~~ 126 (443)
T PLN02793 49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSK-VKTRIVIPAGYTFLVRPIDLGGPCKA-KLTLQISGTIIAPKDPD 126 (443)
T ss_pred CceEEEhhhcccCCCCCCccHHHHHHHHHHHhccC-CCCEEEECCCceEEEEEEEECCccCC-CeEEEEEEEEEccCChH
Confidence 35789999999999999999999999999778764 78999999995599999999999999 99999999999999999
Q ss_pred CCCC-CCcccEEEEeeeceEEeeeeEEeCCCchhcccccCC---CCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCcee
Q 047738 105 AWTS-EIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKH---HPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVH 180 (391)
Q Consensus 105 ~~~~-~~~~~i~~~~~~nv~I~G~G~Idg~g~~~~~~~~~~---~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~~ 180 (391)
+|.. ....||.+.+.+|++|+|.|+|||+|+.||....+. .+.. .||++|.|.+|+|++|++++++|+|.|+
T Consensus 127 ~w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~----~rP~~i~f~~~~nv~v~gitl~nSp~~~ 202 (443)
T PLN02793 127 VWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCR----HAPTAITFHKCKDLRVENLNVIDSQQMH 202 (443)
T ss_pred HccCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCcc----CCceEEEEEeeccEEEECeEEEcCCCeE
Confidence 9963 445799999999999999999999999999753321 2222 3899999999999999999999999999
Q ss_pred EEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE---------------EEeEEEcCCceeEEcccCCC
Q 047738 181 IVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA---------------VTYVNCGPGHGISIGSLGKN 245 (391)
Q Consensus 181 i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~---------------i~n~~~~~g~gi~igs~~~~ 245 (391)
+++..|++|+|++++|.++...+|+||||+.+|+||+|+||+|++ |+|+.|.+||||+|||++++
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~ 282 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKS 282 (443)
T ss_pred EEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCc
Confidence 999999999999999999888899999999999999999999998 89999999999999999988
Q ss_pred CCcCcEEEEEEEeeEEeCCCeEEEEEEeCCCCceEEEEEEEEEEEccCCceEEEEeeeCCCCCcCCCCCcceEEEEEEEE
Q 047738 246 GEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYL 325 (391)
Q Consensus 246 ~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~~g~v~nV~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~~Itf~ 325 (391)
+..+.++||+|+||+|.++.+|++||++.++.|.|+||+|+||+|+++.+||.|++.|++...+|.+....+.|+||+|+
T Consensus 283 ~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~ 362 (443)
T PLN02793 283 NSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFV 362 (443)
T ss_pred CCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEE
Confidence 77789999999999999999999999999989999999999999999999999999998766678777788999999999
Q ss_pred eEEEeecCCeeEEEecCCCCceecEEEEeEEEEecCCCCccceeeecccccccCeecCCCCCC
Q 047738 326 NATGTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKNAFGVAKGNCKPKSCLK 388 (391)
Q Consensus 326 ni~~~~~~~~~i~i~~~~~~~i~~i~~~ni~~~~~~~~~~~~~~c~n~~~~~~~~~~~~~~~~ 388 (391)
||+++.....++.+.|++..||+||+|+||+++..+ |......|.|++|...+.+.|+||+.
T Consensus 363 nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~-g~~~~~~C~n~~g~~~~~~~p~~C~~ 424 (443)
T PLN02793 363 HIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSST-GDFTESFCWEAYGSSSGQVYPPPCFS 424 (443)
T ss_pred EEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecC-CCCCCcEEEccEEeECCeEcCCcccc
Confidence 999998656689999999999999999999999886 44667899999999999999999984
No 2
>PLN03010 polygalacturonase
Probab=100.00 E-value=8e-71 Score=536.64 Aligned_cols=349 Identities=41% Similarity=0.798 Sum_probs=320.5
Q ss_pred CCceEEEeccCccCCCCchhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCC
Q 047738 25 DQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPS 104 (391)
Q Consensus 25 ~~~~~~v~dfGa~~dg~tddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~ 104 (391)
.+.+++|+||||+|||++|||+|||+|+++||....++++|+||+|++|++++|.|+++||+.+++|+++|+|++++++.
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~ 122 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIV 122 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChh
Confidence 66889999999999999999999999998778642113799999997799999999998875489999999999999999
Q ss_pred CCCC-CCcccEEEEeeeceEEeeeeEEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCceeEEE
Q 047738 105 AWTS-EIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVV 183 (391)
Q Consensus 105 ~~~~-~~~~~i~~~~~~nv~I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~~i~~ 183 (391)
+|.. ....|+.+.+++|++|+|.|+|||+|+.||. ++.|.+|+|++|++++++|+|.|++++
T Consensus 123 ~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~-----------------~l~~~~~~nv~v~gitl~nsp~~~i~i 185 (409)
T PLN03010 123 AWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE-----------------ALHISKCDNLTINGITSIDSPKNHISI 185 (409)
T ss_pred hccCCCCcceEEEecccccEEeeceEEeCCCccccc-----------------eEEEEeecCeEEeeeEEEcCCceEEEE
Confidence 9953 3456899999999999999999999999998 389999999999999999999999999
Q ss_pred eccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE---------------EEeEEEcCCceeEEcccCCCCCc
Q 047738 184 DYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA---------------VTYVNCGPGHGISIGSLGKNGEE 248 (391)
Q Consensus 184 ~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~---------------i~n~~~~~g~gi~igs~~~~~~~ 248 (391)
..|++++|++++|.++..++|+||||+.+|++|+|+||+|++ |+++.|..+|||+|||++..+..
T Consensus 186 ~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~ 265 (409)
T PLN03010 186 KTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGAN 265 (409)
T ss_pred eccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCC
Confidence 999999999999999887899999999999999999999998 78888889999999999987667
Q ss_pred CcEEEEEEEeeEEeCCCeEEEEEEeCCCCceEEEEEEEEEEEccCCceEEEEeeeCCCCCcCCCCCcceEEEEEEEEeEE
Q 047738 249 VKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNAT 328 (391)
Q Consensus 249 ~~~~ni~i~N~~~~~~~~gi~i~~~~~~~g~v~nV~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~~Itf~ni~ 328 (391)
..++||+|+||+|.++.+|++||++.++.|.|+||+|+||+++++++||.|++.|+....+|..++....|+||+|+||+
T Consensus 266 ~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~ 345 (409)
T PLN03010 266 AKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFR 345 (409)
T ss_pred CeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeE
Confidence 88999999999999999999999999989999999999999999999999999998866667777889999999999999
Q ss_pred EeecCCeeEEEecCCCCceecEEEEeEEEEecCCCCccceeeecccccccCeecCCCCCCCCC
Q 047738 329 GTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKNAFGVAKGNCKPKSCLKSNS 391 (391)
Q Consensus 329 ~~~~~~~~i~i~~~~~~~i~~i~~~ni~~~~~~~~~~~~~~c~n~~~~~~~~~~~~~~~~~~~ 391 (391)
++.....++.+.|++..||+||+|+||.++.++ +..+...|.|+++...+..+|++|+++||
T Consensus 346 GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~-g~~~~~~C~nv~g~~~~~~~~~~C~~~~~ 407 (409)
T PLN03010 346 GTTSNENAITLKCSAITHCKDVVMDDIDVTMEN-GEKPKVECQNVEGESSDTDLMRDCFKNNS 407 (409)
T ss_pred EEeCCCccEEEEeCCCCCEeceEEEEEEEEecC-CCccceEeeCccccccCCCCCCcccccCC
Confidence 998777899999999999999999999999886 55678999999999889999999998765
No 3
>PLN02155 polygalacturonase
Probab=100.00 E-value=1e-70 Score=534.85 Aligned_cols=355 Identities=38% Similarity=0.685 Sum_probs=318.7
Q ss_pred CCCceEEEeccCccCCCCchhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCC
Q 047738 24 DDQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGP 103 (391)
Q Consensus 24 ~~~~~~~v~dfGa~~dg~tddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~ 103 (391)
..+.+++|+||||+|||++|||+|||+||++||+.. +|++|+||+| +|++++|.|.|+||| +++|+|+|+|+.+.++
T Consensus 23 ~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~-gGg~v~vP~G-~yl~g~i~l~gpcks-nv~l~l~G~l~~~~d~ 99 (394)
T PLN02155 23 SASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSA-SSATVVVPTG-TFLLKVITFGGPCKS-KITFQVAGTVVAPEDY 99 (394)
T ss_pred cCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccC-CCeEEEECCC-cEEEEEEEEcccCCC-CceEEEeeEEECcccc
Confidence 446889999999999999999999999997678754 7899999999 999999999999999 9999999999998888
Q ss_pred CCCCCCCcccEEEEeeeceEEeeeeEEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCceeEEE
Q 047738 104 SAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVV 183 (391)
Q Consensus 104 ~~~~~~~~~~i~~~~~~nv~I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~~i~~ 183 (391)
..|.. ...|+.+.+.+++.|+| |+|||+|+.||.........+. +|+++.|.+|++++|++++++|||.|++++
T Consensus 100 ~~~~~-~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~----~p~~i~~~~~~nv~i~gitl~nSp~w~i~~ 173 (394)
T PLN02155 100 RTFGN-SGYWILFNKVNRFSLVG-GTFDARANGFWSCRKSGQNCPP----GVRSISFNSAKDVIISGVKSMNSQVSHMTL 173 (394)
T ss_pred ccccc-cceeEEEECcCCCEEEc-cEEecCceeEEEcccCCCCCCC----cccceeEEEeeeEEEECeEEEcCCCeEEEE
Confidence 77742 23589999999999999 9999999999973211111112 678999999999999999999999999999
Q ss_pred eccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE---------------EEeEEEcCCceeEEcccCCCCCc
Q 047738 184 DYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA---------------VTYVNCGPGHGISIGSLGKNGEE 248 (391)
Q Consensus 184 ~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~---------------i~n~~~~~g~gi~igs~~~~~~~ 248 (391)
..|++|+|++++|.++.+++|+|||++.+|+||+|+||.|++ |+++.|.+||||+|||+++....
T Consensus 174 ~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~ 253 (394)
T PLN02155 174 NGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNE 253 (394)
T ss_pred ECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCC
Confidence 999999999999999888899999999999999999999998 88999999999999999876557
Q ss_pred CcEEEEEEEeeEEeCCCeEEEEEEeCC-CCceEEEEEEEEEEEccCCceEEEEeeeCCCCCcCCCCCcceEEEEEEEEeE
Q 047738 249 VKVENITVRHVNFCKTTNGARIKTWQA-GKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNA 327 (391)
Q Consensus 249 ~~~~ni~i~N~~~~~~~~gi~i~~~~~-~~g~v~nV~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~~Itf~ni 327 (391)
+.++||+++||+|.++.+|++||++.+ ++|.|+||+|+||+|+++++||.|++.|++....|+++.+.+.|+||+|+||
T Consensus 254 ~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni 333 (394)
T PLN02155 254 DGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNI 333 (394)
T ss_pred CcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEee
Confidence 899999999999999999999999865 6799999999999999999999999999875545665567789999999999
Q ss_pred EEeecCCeeEEEecCCCCceecEEEEeEEEEecCCCCccceeeecccccccCeecCCCCCC
Q 047738 328 TGTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKNAFGVAKGNCKPKSCLK 388 (391)
Q Consensus 328 ~~~~~~~~~i~i~~~~~~~i~~i~~~ni~~~~~~~~~~~~~~c~n~~~~~~~~~~~~~~~~ 388 (391)
+++.....++++.|.+..||+||+|+||+++.+. +....++|.|++|...+.++|++|+.
T Consensus 334 ~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~-~~~~~~~C~n~~G~~~~~~~p~~c~~ 393 (394)
T PLN02155 334 QGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNK-GTPATSFCFNAVGKSLGVIQPTSCLN 393 (394)
T ss_pred EEEecCCceEEEEeCCCCCEEEEEEEeeEEEecC-CCccCcEEeccEeEEcccCCcccccC
Confidence 9998766789999999999999999999999986 66668999999999999999999974
No 4
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1.5e-69 Score=532.35 Aligned_cols=349 Identities=39% Similarity=0.813 Sum_probs=316.8
Q ss_pred CCCceEEEeccCccCCCCchhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCC
Q 047738 24 DDQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGP 103 (391)
Q Consensus 24 ~~~~~~~v~dfGa~~dg~tddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~ 103 (391)
...++++|+||||+|||++|||+|||+||++||++. |+++|+||+|++|+++++.|+|+||+ +++|+++|+|++++++
T Consensus 63 ~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~-Ggg~v~vP~G~tyl~~~i~l~gp~ks-~~~l~l~g~L~~s~d~ 140 (431)
T PLN02218 63 RTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSN-GAVNLLVPKGNTYLLKSIQLTGPCKS-IRTVQIFGTLSASQKR 140 (431)
T ss_pred CCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcC-CCcEEEECCCCeEEEeeeEecCccCC-ceEEEEEEEEEeCCCh
Confidence 357899999999999999999999999997788764 67899999996799999999999999 9999999999999999
Q ss_pred CCCCCCCcccEEEEeeeceEEeee--eEEeCCCchhcccccCC---CCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCc
Q 047738 104 SAWTSEIGRWIAFGNITGLNINGR--GLFDGNGQKWWDQSCKH---HPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQ 178 (391)
Q Consensus 104 ~~~~~~~~~~i~~~~~~nv~I~G~--G~Idg~g~~~~~~~~~~---~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~ 178 (391)
.+|. ....|+.+.+.+|++|+|. |+|||+|+.||...++. .|+. .||+++.|.+|+|++|++++++|+|+
T Consensus 141 ~~y~-~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~----~rP~~i~f~~~~nv~I~gitl~nSp~ 215 (431)
T PLN02218 141 SDYK-DISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCT----KAPTALTFYNSKSLIVKNLRVRNAQQ 215 (431)
T ss_pred hhcc-ccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccC----cCCEEEEEEccccEEEeCeEEEcCCC
Confidence 8885 2357899999999999996 99999999999864332 2333 39999999999999999999999999
Q ss_pred eeEEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE---------------EEeEEEcCCceeEEcccC
Q 047738 179 VHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA---------------VTYVNCGPGHGISIGSLG 243 (391)
Q Consensus 179 ~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~---------------i~n~~~~~g~gi~igs~~ 243 (391)
|++++..|++|+|+|++|.++.+++|+||||+.+|+||+|+||+|.+ |+||+|.++|||+|||++
T Consensus 216 w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g 295 (431)
T PLN02218 216 IQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLG 295 (431)
T ss_pred EEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCC
Confidence 99999999999999999999888899999999999999999999998 889999999999999999
Q ss_pred CCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCCCCceEEEEEEEEEEEccCCceEEEEeeeCCCCCcCCCCCcceEEEEEE
Q 047738 244 KNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVR 323 (391)
Q Consensus 244 ~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~~g~v~nV~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~~It 323 (391)
++...+.++||+|+||++.++.+|++||++++++|.|+||+|+||+|+++++||.|++.|++... |...+..+.|+||+
T Consensus 296 ~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~-~~~~~s~v~I~nI~ 374 (431)
T PLN02218 296 DDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSK-CTSQQSAVQVKNVV 374 (431)
T ss_pred CCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCCC-CCCCCCCeEEEEEE
Confidence 77667899999999999999999999999999999999999999999999999999999987543 66667788999999
Q ss_pred EEeEEEeecCCeeEEEecCCCCceecEEEEeEEEEecCCCCccceeeecccccccCeecCCCCC
Q 047738 324 YLNATGTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKNAFGVAKGNCKPKSCL 387 (391)
Q Consensus 324 f~ni~~~~~~~~~i~i~~~~~~~i~~i~~~ni~~~~~~~~~~~~~~c~n~~~~~~~~~~~~~~~ 387 (391)
|+||+++.+...++.+.|++..||+||+|+||+++.. ...|.||.+...+.++| .|.
T Consensus 375 ~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~------~~~c~n~~~~~~~~~~p-~c~ 431 (431)
T PLN02218 375 YRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG------KATCTNANVVDKGAVSP-QCN 431 (431)
T ss_pred EEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC------eeeEEEeeEEEcccCCC-CCC
Confidence 9999999876678999999999999999999999753 35799999999887766 884
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=1.5e-69 Score=530.48 Aligned_cols=355 Identities=39% Similarity=0.768 Sum_probs=319.2
Q ss_pred CCCceEEEeccCccCCCCchhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCC
Q 047738 24 DDQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGP 103 (391)
Q Consensus 24 ~~~~~~~v~dfGa~~dg~tddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~ 103 (391)
..+..+||++|||+|||++|||+|||+|+++||+.. ++++|+||+|++|+++++.|+|+||+..++++++|+|+++. .
T Consensus 19 ~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~-ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~-~ 96 (456)
T PLN03003 19 TSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGT-GDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPS-K 96 (456)
T ss_pred eeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhcc-CCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCc-c
Confidence 446789999999999999999999999999888754 78999999996699999999999887348888999999865 3
Q ss_pred CCCCCCCcccEEEEeeeceEEeeeeEEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCceeEEE
Q 047738 104 SAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVV 183 (391)
Q Consensus 104 ~~~~~~~~~~i~~~~~~nv~I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~~i~~ 183 (391)
..|......||.+.++++++|+|.|+|||+|+.||... ..||+++.|.+|+|++|+|++++|+|.|++++
T Consensus 97 ~~w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~----------~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i 166 (456)
T PLN03003 97 GNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK----------GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHI 166 (456)
T ss_pred ccccCCCcceEEEEcccceEEeccceEeCCchhhhhcc----------cCCceEEEEEecCCcEEeCeEEecCCcEEEEE
Confidence 56765456799999999999999999999999999841 12999999999999999999999999999999
Q ss_pred eccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE---------------EEeEEEcCCceeEEcccCCCCCc
Q 047738 184 DYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA---------------VTYVNCGPGHGISIGSLGKNGEE 248 (391)
Q Consensus 184 ~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~---------------i~n~~~~~g~gi~igs~~~~~~~ 248 (391)
..|++++|++++|.++..++|+||||+.+|+||+|+||.|.+ |+|++|.++|||+|||+++++..
T Consensus 167 ~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~ 246 (456)
T PLN03003 167 SECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGET 246 (456)
T ss_pred eccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCc
Confidence 999999999999999988899999999999999999999998 89999999999999999987666
Q ss_pred CcEEEEEEEeeEEeCCCeEEEEEEeCCCCceEEEEEEEEEEEccCCceEEEEeeeCCCCC--cCCCCCcceEEEEEEEEe
Q 047738 249 VKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKD--VCAKTSTGVHISDVRYLN 326 (391)
Q Consensus 249 ~~~~ni~i~N~~~~~~~~gi~i~~~~~~~g~v~nV~~~ni~i~~~~~~i~i~~~~~~~~~--~~~~~~~~~~i~~Itf~n 326 (391)
+.++||+|+||+|.++.+|++||++++++|.|+||+|+||+++++++||.|++.|++... .|......+.|+||+|+|
T Consensus 247 ~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~N 326 (456)
T PLN03003 247 ATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSN 326 (456)
T ss_pred ceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEe
Confidence 889999999999999999999999999899999999999999999999999999975322 244455678999999999
Q ss_pred EEEeecCCeeEEEecCCCCceecEEEEeEEEEecCC--CCccceeeecccccccCeecCCCCCCCC
Q 047738 327 ATGTSATDVAINLDCSNNVACTDIKLENIELQSATE--GKGVLSSCKNAFGVAKGNCKPKSCLKSN 390 (391)
Q Consensus 327 i~~~~~~~~~i~i~~~~~~~i~~i~~~ni~~~~~~~--~~~~~~~c~n~~~~~~~~~~~~~~~~~~ 390 (391)
|+++.....++.+.|++..||+||+|+||.++.+.. +....+.|.|++|...+.+||+||++..
T Consensus 327 I~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~~~ 392 (456)
T PLN03003 327 FIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLELS 392 (456)
T ss_pred EEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCccccC
Confidence 999987777899999999999999999999998731 3357899999999999999999999764
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1.6e-68 Score=521.83 Aligned_cols=352 Identities=39% Similarity=0.685 Sum_probs=311.6
Q ss_pred CCceEEEeccCccCCCCchhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCC
Q 047738 25 DQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPS 104 (391)
Q Consensus 25 ~~~~~~v~dfGa~~dg~tddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~ 104 (391)
...+++|+||||+|||.+|||+|||+||++||+.. ||++|+||+| +|+++++.|+|+|++ ...|.| +|+++++++
T Consensus 33 ~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~-Ggg~V~vP~G-~yl~g~i~lkgpc~~-~s~v~l--~L~~s~d~~ 107 (404)
T PLN02188 33 STFLFDVRSFGARANGHTDDSKAFMAAWKAACAST-GAVTLLIPPG-TYYIGPVQFHGPCTN-VSSLTF--TLKAATDLS 107 (404)
T ss_pred CceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccC-CCeEEEECCC-eEEEEeEEeCCCcCc-ceeEEE--EEEcCCCHH
Confidence 35789999999999999999999999998778764 6789999999 999999999999865 444544 999999999
Q ss_pred CCCCCCcccEEEEeeeceEEeeeeEEeCCCchhcccccCC--CCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCceeEE
Q 047738 105 AWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKH--HPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIV 182 (391)
Q Consensus 105 ~~~~~~~~~i~~~~~~nv~I~G~G~Idg~g~~~~~~~~~~--~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~~i~ 182 (391)
+|.. ...|+.+..++|++|+|.|+|||+|+.||+..... .+. ..||++|.|.+|++++|++++++|+|.|+++
T Consensus 108 ~y~~-~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~----~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~ 182 (404)
T PLN02188 108 RYGS-GNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDC----KLLPTSVKFVNMNNTVVRGITSVNSKFFHIA 182 (404)
T ss_pred HCCC-ccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCC----CcCceEEEEEeeeeEEEeCeEEEcCCCeEEE
Confidence 9963 24688888899999999999999999999742111 122 2399999999999999999999999999999
Q ss_pred EeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE---------------EEeEEEcCCceeEEcccCCCCC
Q 047738 183 VDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA---------------VTYVNCGPGHGISIGSLGKNGE 247 (391)
Q Consensus 183 ~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~---------------i~n~~~~~g~gi~igs~~~~~~ 247 (391)
+..|++|+|++++|.++..++|+|||++.+|++|+|+||+|++ |+|+.|..+|||+|||.++++.
T Consensus 183 ~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~ 262 (404)
T PLN02188 183 LVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPN 262 (404)
T ss_pred EEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCc
Confidence 9999999999999999888899999999999999999999998 8899999999999999988877
Q ss_pred cCcEEEEEEEeeEEeCCCeEEEEEEeCC--CCceEEEEEEEEEEEccCCceEEEEeeeCCCCCcCC-CCCcceEEEEEEE
Q 047738 248 EVKVENITVRHVNFCKTTNGARIKTWQA--GKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCA-KTSTGVHISDVRY 324 (391)
Q Consensus 248 ~~~~~ni~i~N~~~~~~~~gi~i~~~~~--~~g~v~nV~~~ni~i~~~~~~i~i~~~~~~~~~~~~-~~~~~~~i~~Itf 324 (391)
.+.++||+|+||+|.++.+|++||++.+ +.|.++||+|+||+|+++++||.|++.|++... |. +.+..+.|+||+|
T Consensus 263 ~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~-~~~~~~s~v~I~nIt~ 341 (404)
T PLN02188 263 EGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYS-CESKYPSGVTLSDIYF 341 (404)
T ss_pred CCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCC-CCcCCCCCcEEEeEEE
Confidence 7889999999999999999999999975 358999999999999999999999999986543 32 2345689999999
Q ss_pred EeEEEeecCCeeEEEecCCCCceecEEEEeEEEEecCCCCccceeeecccccccCeecCCCCC
Q 047738 325 LNATGTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKNAFGVAKGNCKPKSCL 387 (391)
Q Consensus 325 ~ni~~~~~~~~~i~i~~~~~~~i~~i~~~ni~~~~~~~~~~~~~~c~n~~~~~~~~~~~~~~~ 387 (391)
+||+++.....++.+.|++..||+||+|+||+++.+..+....+.|+|++|...+.++|+||+
T Consensus 342 ~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 342 KNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred EEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 999999876678999999999999999999999987523456799999999999999999996
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=1.8e-51 Score=395.98 Aligned_cols=303 Identities=36% Similarity=0.660 Sum_probs=259.4
Q ss_pred CCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCCCCCCCCcccEEEEeeeceEEeeeeEEeCCCchhccc
Q 047738 61 QTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQ 140 (391)
Q Consensus 61 ~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~Idg~g~~~~~~ 140 (391)
++++|+||+| +|+++++.|++.+.+ +++++|+|++.++.....|.. ..||.+.+++|++|+|.|+|||+|+.||+.
T Consensus 5 ~~~~v~vP~g-~~~~~~~~l~~~l~~-~~~~~l~G~~~~~~~~~~~~~--~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~ 80 (326)
T PF00295_consen 5 GGGTVVVPAG-TYLLGPLFLKSTLHS-DVGLTLDGTINFSYDNWEGPN--SALIYAENAENITITGKGTIDGNGQAWWDG 80 (326)
T ss_dssp EEESEEESTS-TEEEEETSEETECET-TCEEEEESEEEEG-EESTSE---SEEEEEESEEEEECTTSSEEE--GGGTCSS
T ss_pred cCCEEEECCC-CeEEceeEEEcccCC-CeEEEEEEEEEeCCCcccCCc--cEEEEEEceEEEEecCCceEcCchhhhhcc
Confidence 4679999999 999999999755556 999999999998754444432 788999999999999999999999999985
Q ss_pred ccCC-CCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCceeEEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEE
Q 047738 141 SCKH-HPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVH 219 (391)
Q Consensus 141 ~~~~-~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~ 219 (391)
.... .+. ..||+++.|.+|++++|++++++++|.|++++..|++++|++++|.++...+|+|||++.+|+||+|+
T Consensus 81 ~~~~~~~~----~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~ 156 (326)
T PF00295_consen 81 SGDANNNG----QRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIE 156 (326)
T ss_dssp CTTHCCSS----SSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEE
T ss_pred cccccccc----ccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEE
Confidence 4321 222 24999999999999999999999999999999999999999999999877789999999999999999
Q ss_pred eeEEEE---------------EEeEEEcCCceeEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCCCCceEEEEE
Q 047738 220 TSIIAA---------------VTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVE 284 (391)
Q Consensus 220 n~~i~~---------------i~n~~~~~g~gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~~g~v~nV~ 284 (391)
||+|++ |+||++..+||++|||++..+....++||+|+||+|.++.+|++||+++++.|.|+||+
T Consensus 157 n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v~nI~ 236 (326)
T PF00295_consen 157 NCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYVSNIT 236 (326)
T ss_dssp SEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTTSEEEEEEE
T ss_pred EeecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecccceEEeceE
Confidence 999987 89999999999999999855444579999999999999999999999998899999999
Q ss_pred EEEEEEccCCceEEEEeeeCCCCCcCCCCCcceEEEEEEEEeEEEeecCCeeEEEecCCCCceecEEEEeEEEEecCCCC
Q 047738 285 FSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINLDCSNNVACTDIKLENIELQSATEGK 364 (391)
Q Consensus 285 ~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~~Itf~ni~~~~~~~~~i~i~~~~~~~i~~i~~~ni~~~~~~~~~ 364 (391)
|+||+++++.+||.|++.|.. ..+|..++..+.|+||+|+||+++.....++++.|.+..||+||+|+||+++. +
T Consensus 237 f~ni~~~~v~~pi~i~~~y~~-~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~-g--- 311 (326)
T PF00295_consen 237 FENITMENVKYPIFIDQDYRD-GGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG-G--- 311 (326)
T ss_dssp EEEEEEEEESEEEEEEEEECT-TEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES-S---
T ss_pred EEEEEecCCceEEEEEecccc-ccccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc-C---
Confidence 999999999999999999987 33455555677999999999999998767999999999999999999999998 2
Q ss_pred ccceeeeccccc
Q 047738 365 GVLSSCKNAFGV 376 (391)
Q Consensus 365 ~~~~~c~n~~~~ 376 (391)
.....|+|++..
T Consensus 312 ~~~~~c~nv~~~ 323 (326)
T PF00295_consen 312 KKPAQCKNVPSG 323 (326)
T ss_dssp BSESEEBSCCTT
T ss_pred CcCeEEECCCCC
Confidence 467899998754
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.9e-36 Score=300.87 Aligned_cols=260 Identities=30% Similarity=0.504 Sum_probs=217.6
Q ss_pred CCceEEEeccCccCCCCchhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEc-e-EEecCCC
Q 047738 25 DQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLS-G-TIKAPDG 102 (391)
Q Consensus 25 ~~~~~~v~dfGa~~dg~tddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~-g-~l~~~~~ 102 (391)
....++|++|||++||.+|+++|||+||+ +|++. +|++|+||+| +|+.++|+|+ | +++|+++ | +|+.+.+
T Consensus 79 ~~t~~sv~~~ga~gDG~t~~~~aiq~AI~-~ca~a-~Gg~V~lPaG-tylsg~l~LK----S-~~~L~l~egatl~~~~~ 150 (542)
T COG5434 79 TDTAFSVSDDGAVGDGATDNTAAIQAAID-ACASA-GGGTVLLPAG-TYLSGPLFLK----S-NVTLHLAEGATLLASSN 150 (542)
T ss_pred ccceeeeccccccccCCccCHHHHHHHHH-hhhhh-cCceEEECCc-eeEeeeEEEe----c-ccEEEecCCceeeCCCC
Confidence 34678999999999999999999999998 56653 7999999999 9999999997 8 9999995 5 9999999
Q ss_pred CCCCCC-------CCcc----------cE-------------EEEeeeceE-EeeeeEEeCCC----chhcccccC---C
Q 047738 103 PSAWTS-------EIGR----------WI-------------AFGNITGLN-INGRGLFDGNG----QKWWDQSCK---H 144 (391)
Q Consensus 103 ~~~~~~-------~~~~----------~i-------------~~~~~~nv~-I~G~G~Idg~g----~~~~~~~~~---~ 144 (391)
+.+|.+ ...+ ++ .....++.. |.|.|+++|++ ..||..... .
T Consensus 151 p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~~ 230 (542)
T COG5434 151 PKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETR 230 (542)
T ss_pred hhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhhc
Confidence 988862 1111 12 222233444 78888888864 226653220 0
Q ss_pred CCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCceeEEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEE
Q 047738 145 HPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIA 224 (391)
Q Consensus 145 ~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~ 224 (391)
.+.+. .||..+.+..|+||++++++|.+++.|.+|+..|++++++|++|.+.... |+||+++.+|+||.|++|+|+
T Consensus 231 i~~~~---~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fd 306 (542)
T COG5434 231 IGGKG---VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFD 306 (542)
T ss_pred ccccC---cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEe
Confidence 11110 48999999999999999999999999999999999999999999997654 999999999999999999999
Q ss_pred E--------------------------EEeEEEcCCce-eEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCCCC
Q 047738 225 A--------------------------VTYVNCGPGHG-ISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAGK 277 (391)
Q Consensus 225 ~--------------------------i~n~~~~~g~g-i~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~~ 277 (391)
+ |++|.+..+|| +.+||++ .+.++||++|||.|.+..+||+||+..+++
T Consensus 307 tgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~----~ggv~ni~ved~~~~~~d~GLRikt~~~~g 382 (542)
T COG5434 307 TGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM----GGGVQNITVEDCVMDNTDRGLRIKTNDGRG 382 (542)
T ss_pred cCCceEEeecccCCcccccccccccEEEecceecccccceEeeeec----CCceeEEEEEeeeeccCcceeeeeeecccc
Confidence 8 88999999996 8899986 789999999999999999999999999999
Q ss_pred ceEEEEEEEEEEEccCCceEEEE
Q 047738 278 GQVQHVEFSYMNFTEVQNPIIID 300 (391)
Q Consensus 278 g~v~nV~~~ni~i~~~~~~i~i~ 300 (391)
|.++||+|+++.+.++..+..|.
T Consensus 383 G~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 383 GGVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred eeEEEEEEecccccCcccceeee
Confidence 99999999999999986554443
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.93 E-value=5.9e-24 Score=205.27 Aligned_cols=258 Identities=14% Similarity=0.164 Sum_probs=189.9
Q ss_pred CCCceEEEeccCccCCCCchhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEc-eEEecCCC
Q 047738 24 DDQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLS-GTIKAPDG 102 (391)
Q Consensus 24 ~~~~~~~v~dfGa~~dg~tddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~-g~l~~~~~ 102 (391)
.+.+.+++++|||++||++|+|+|||+||++| +. ++++|.+|+| +|+.+++.|+ + +++|..+ +.....
T Consensus 33 ~p~r~~dv~~fGa~~dG~td~T~ALQaAIdaA-a~--gG~tV~Lp~G-~Y~~G~L~L~----s-pltL~G~~gAt~~v-- 101 (455)
T TIGR03808 33 TSTLGRDATQYGVRPNSPDDQTRALQRAIDEA-AR--AQTPLALPPG-VYRTGPLRLP----S-GAQLIGVRGATRLV-- 101 (455)
T ss_pred CCccCCCHHHcCcCCCCcchHHHHHHHHHHHh-hc--CCCEEEECCC-ceecccEEEC----C-CcEEEecCCcEEEE--
Confidence 46677999999999999999999999999964 43 3789999999 9999999997 6 9999987 432110
Q ss_pred CCCCCCCCcccEEEEeeeceEEeeeeEEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCceeEE
Q 047738 103 PSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIV 182 (391)
Q Consensus 103 ~~~~~~~~~~~i~~~~~~nv~I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~~i~ 182 (391)
+. +...++...++++|+|+|. +|+++|..|.. ++.+|++..|++++|++++|.++..|++.
T Consensus 102 ---Id-G~~~lIiai~A~nVTIsGL-tIdGsG~dl~~--------------rdAgI~v~~a~~v~Iedn~L~gsg~FGI~ 162 (455)
T TIGR03808 102 ---FT-GGPSLLSSEGADGIGLSGL-TLDGGGIPLPQ--------------RRGLIHCQGGRDVRITDCEITGSGGNGIW 162 (455)
T ss_pred ---Ec-CCceEEEEecCCCeEEEee-EEEeCCCcccC--------------CCCEEEEccCCceEEEeeEEEcCCcceEE
Confidence 01 1146666778999999996 99999975533 78899999999999999999999999999
Q ss_pred EeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEEEEe-----EEE-------------------------c
Q 047738 183 VDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTY-----VNC-------------------------G 232 (391)
Q Consensus 183 ~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~i~n-----~~~-------------------------~ 232 (391)
++.|+ ..|.+.+|.... ..+|+++.+.+..|+++.|...++ ... .
T Consensus 163 L~~~~-~~I~~N~I~g~~----~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~ 237 (455)
T TIGR03808 163 LETVS-GDISGNTITQIA----VTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQ 237 (455)
T ss_pred EEcCc-ceEecceEeccc----cceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCC
Confidence 99999 888888887753 345999999999999999998443 222 1
Q ss_pred CCceeEEcccCCCCCcCcEEEEEEEeeEEeCCC-eEEEEEEeCCCCceEEEEEEEEEEEccCCc-eEEEEeeeCC-----
Q 047738 233 PGHGISIGSLGKNGEEVKVENITVRHVNFCKTT-NGARIKTWQAGKGQVQHVEFSYMNFTEVQN-PIIIDQYYCD----- 305 (391)
Q Consensus 233 ~g~gi~igs~~~~~~~~~~~ni~i~N~~~~~~~-~gi~i~~~~~~~g~v~nV~~~ni~i~~~~~-~i~i~~~~~~----- 305 (391)
.|+||.+.. ..+++|+++++.++. .||++.+. +|+.|++.++++..+ +++....+..
T Consensus 238 ~GNGI~~~~---------a~~v~V~gN~I~~~r~dgI~~nss-------s~~~i~~N~~~~~R~~alhymfs~~g~~i~~ 301 (455)
T TIGR03808 238 YGNAINAFR---------AGNVIVRGNRIRNCDYSAVRGNSA-------SNIQITGNSVSDVREVALYSEFAFEGAVIAN 301 (455)
T ss_pred ccccEEEEc---------cCCeEEECCEEeccccceEEEEcc-------cCcEEECcEeeeeeeeEEEEEEeCCCcEEec
Confidence 234555533 568999999999999 89998754 455555555555544 4443221110
Q ss_pred ------CCC--cC--CCCCcceEEEEEEEEeEEEeec
Q 047738 306 ------QKD--VC--AKTSTGVHISDVRYLNATGTSA 332 (391)
Q Consensus 306 ------~~~--~~--~~~~~~~~i~~Itf~ni~~~~~ 332 (391)
..+ -| .+...-..++.-.+||++-+..
T Consensus 302 N~~~g~~~G~av~nf~~ggr~~~~~gn~irn~~~~~p 338 (455)
T TIGR03808 302 NTVDGAAVGVSVCNFNEGGRLAVVQGNIIRNLIPKRP 338 (455)
T ss_pred cEEecCcceEEEEeecCCceEEEEecceeeccccCCC
Confidence 000 01 1334455677777888876653
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.84 E-value=2.3e-19 Score=163.84 Aligned_cols=213 Identities=23% Similarity=0.322 Sum_probs=121.8
Q ss_pred eEEEeccCccCCCCchhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEee-eeecCCCCCcceEEEEce---E-EecCCC
Q 047738 28 TFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHP-ITFSGPCKSSNISIQLSG---T-IKAPDG 102 (391)
Q Consensus 28 ~~~v~dfGa~~dg~tddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~-i~l~~~~~s~~~~l~l~g---~-l~~~~~ 102 (391)
.++|+||||++||++|||+|||+||+++++. ++++|||||| +|+++. +.++ + +++|+.+| + +.....
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~~--~g~~v~~P~G-~Y~i~~~l~~~----s-~v~l~G~g~~~~~~~~~~~ 72 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAAA--GGGVVYFPPG-TYRISGTLIIP----S-NVTLRGAGGNSTILFLSGS 72 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHCST--TSEEEEE-SE-EEEESS-EEE-----T-TEEEEESSTTTEEEEECTT
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhcccC--CCeEEEEcCc-EEEEeCCeEcC----C-CeEEEccCCCeeEEEecCc
Confidence 3789999999999999999999999544544 6999999999 999975 8887 6 99999984 2 332222
Q ss_pred CCCCCCCCcccEEEEe-eec--eEEeeeeEEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCce
Q 047738 103 PSAWTSEIGRWIAFGN-ITG--LNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQV 179 (391)
Q Consensus 103 ~~~~~~~~~~~i~~~~-~~n--v~I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~ 179 (391)
...+.. ......+.. ..+ +.|++ -+|++.....-. ....+.+..+++++|+++++.++...
T Consensus 73 ~~~~~~-~~~~~~~~~~~~~~~~~i~n-l~i~~~~~~~~~--------------~~~~i~~~~~~~~~i~nv~~~~~~~~ 136 (225)
T PF12708_consen 73 GDSFSV-VPGIGVFDSGNSNIGIQIRN-LTIDGNGIDPNN--------------NNNGIRFNSSQNVSISNVRIENSGGD 136 (225)
T ss_dssp TSTSCC-EEEEEECCSCSCCEEEEEEE-EEEEETCGCE-S--------------CEEEEEETTEEEEEEEEEEEES-SS-
T ss_pred cccccc-ccceeeeecCCCCceEEEEe-eEEEcccccCCC--------------CceEEEEEeCCeEEEEeEEEEccCcc
Confidence 221110 001111111 011 12333 334444331100 23568888888888888888887776
Q ss_pred eEEEeccccEEEEeEEEeCCCCCCCCceEeecC-cccEEEEeeEEEEEEeEEEcC-CceeEEcccCCCCCcCcEEEEEEE
Q 047738 180 HIVVDYSQDVHFKSLIIDSPETSPNTDGIHIAR-SHDVSVHTSIIAAVTYVNCGP-GHGISIGSLGKNGEEVKVENITVR 257 (391)
Q Consensus 180 ~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~i~n~~~~~-g~gi~igs~~~~~~~~~~~ni~i~ 257 (391)
++.+..+....+.+.... .++.+.. +.++.+. ++.... ..|+.. ..++++++
T Consensus 137 ~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~----------~~~~~~i~ 190 (225)
T PF12708_consen 137 GIYFNTGTDYRIIGSTHV--------SGIFIDNGSNNVIVN--------NCIFNGGDNGIIL----------GNNNITIS 190 (225)
T ss_dssp SEEEECCEECEEECCEEE--------EEEEEESCEEEEEEE--------CEEEESSSCSEEC----------EEEEEEEE
T ss_pred EEEEEccccCcEeecccc--------eeeeeccceeEEEEC--------CccccCCCceeEe----------ecceEEEE
Confidence 676664433322222111 0222221 1223323 333332 335322 12799999
Q ss_pred eeEEeC-CCeEEEEEEeCCCCceEEEEEEEEEEEccCCceE
Q 047738 258 HVNFCK-TTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPI 297 (391)
Q Consensus 258 N~~~~~-~~~gi~i~~~~~~~g~v~nV~~~ni~i~~~~~~i 297 (391)
||++.+ ...||.+.... ++.++|++++++..+|
T Consensus 191 n~~~~~~~~~gi~i~~~~-------~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 191 NNTFEGNCGNGINIEGGS-------NIIISNNTIENCDDGI 224 (225)
T ss_dssp CEEEESSSSESEEEEECS-------EEEEEEEEEESSSEEE
T ss_pred eEEECCccceeEEEECCe-------EEEEEeEEEECCccCc
Confidence 999988 67789887532 3788888888877665
No 11
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.77 E-value=3.9e-16 Score=154.04 Aligned_cols=192 Identities=17% Similarity=0.164 Sum_probs=151.4
Q ss_pred eeEEEeeeCcEEEeeeEEEcC---Cc--------eeEEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEE
Q 047738 156 TAVSFIQCNNVHINEIYVERS---PQ--------VHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIA 224 (391)
Q Consensus 156 ~~i~~~~~~nv~I~~i~i~~~---~~--------~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~ 224 (391)
..|.|.+++++.|.|--..+. .. ..+.+..|++++|+++++.+++. .-+++..|++|+|++..|.
T Consensus 105 ~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~----w~i~i~~c~nV~i~~l~I~ 180 (456)
T PLN03003 105 QWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPM----AHIHISECNYVTISSLRIN 180 (456)
T ss_pred ceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCc----EEEEEeccccEEEEEEEEe
Confidence 468899999999988433332 11 25889999999999999999764 4588889999999999998
Q ss_pred E-------------------EEeEEEcCCc-eeEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCCC--CceEEE
Q 047738 225 A-------------------VTYVNCGPGH-GISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAG--KGQVQH 282 (391)
Q Consensus 225 ~-------------------i~n~~~~~g~-gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~--~g~v~n 282 (391)
+ |++|.+..++ +|+|++ +.+||+|+||++.. .+||.|.+.... .+.|+|
T Consensus 181 ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiks--------gs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~N 251 (456)
T PLN03003 181 APESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINS--------GTSNIHISGIDCGP-GHGISIGSLGKDGETATVEN 251 (456)
T ss_pred CCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCC--------CCccEEEEeeEEEC-CCCeEEeeccCCCCcceEEE
Confidence 6 7888888775 799976 36899999999976 489999987432 357999
Q ss_pred EEEEEEEEccCCceEEEEeeeCCCCCcCCCCCcceEEEEEEEEeEEEeecCCeeEEEecC-----C---------CCcee
Q 047738 283 VEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINLDCS-----N---------NVACT 348 (391)
Q Consensus 283 V~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~~Itf~ni~~~~~~~~~i~i~~~-----~---------~~~i~ 348 (391)
|+++|+++.+..++++|++..+ +.+.++||+|+||++..... ++.|... + ...++
T Consensus 252 V~v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~~-pI~Idq~Y~~~~~~~~~~~~~s~v~Is 320 (456)
T PLN03003 252 VCVQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVEN-PIIIDQFYNGGDSDNAKDRKSSAVEVS 320 (456)
T ss_pred EEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCccc-eEEEEcccCCCCCCCcccCCCCCcEEE
Confidence 9999999999999999998532 34689999999999998754 6666421 0 12589
Q ss_pred cEEEEeEEEEecCCCCccceeeec
Q 047738 349 DIKLENIELQSATEGKGVLSSCKN 372 (391)
Q Consensus 349 ~i~~~ni~~~~~~~~~~~~~~c~n 372 (391)
||+|+||+.+..+ ..++.+.|+.
T Consensus 321 nI~f~NI~GTs~~-~~ai~l~Cs~ 343 (456)
T PLN03003 321 KVVFSNFIGTSKS-EYGVDFRCSE 343 (456)
T ss_pred eEEEEeEEEEeCc-cceEEEEeCC
Confidence 9999999998765 3456666654
No 12
>PLN02218 polygalacturonase ADPG
Probab=99.76 E-value=2.9e-16 Score=155.29 Aligned_cols=192 Identities=20% Similarity=0.262 Sum_probs=149.7
Q ss_pred eeEEEeeeCcEEEee---eEEEcCC-------------------ceeEEEeccccEEEEeEEEeCCCCCCCCceEeecCc
Q 047738 156 TAVSFIQCNNVHINE---IYVERSP-------------------QVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARS 213 (391)
Q Consensus 156 ~~i~~~~~~nv~I~~---i~i~~~~-------------------~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s 213 (391)
..|.+.+.+|++|.+ =+|.... ...+.+..|++++|+++++.+++. .-+++..|
T Consensus 148 ~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~----w~i~~~~~ 223 (431)
T PLN02218 148 KWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQ----IQISIEKC 223 (431)
T ss_pred cCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCC----EEEEEEce
Confidence 347888889999988 2332111 134788999999999999999764 45888899
Q ss_pred ccEEEEeeEEEE-------------------EEeEEEcCCc-eeEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEe
Q 047738 214 HDVSVHTSIIAA-------------------VTYVNCGPGH-GISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTW 273 (391)
Q Consensus 214 ~nv~I~n~~i~~-------------------i~n~~~~~g~-gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~ 273 (391)
++|+|+|..|.+ |++|.+..++ +|+|++ +.+||+|+||++.. .+||.|.+.
T Consensus 224 ~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIks--------gs~nI~I~n~~c~~-GHGisIGS~ 294 (431)
T PLN02218 224 SNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIES--------GSQNVQINDITCGP-GHGISIGSL 294 (431)
T ss_pred eeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecC--------CCceEEEEeEEEEC-CCCEEECcC
Confidence 999999999976 7888888775 799976 37899999999965 589999986
Q ss_pred CCC--CceEEEEEEEEEEEccCCceEEEEeeeCCCCCcCCCCCcceEEEEEEEEeEEEeecCCeeEEEecC-C-------
Q 047738 274 QAG--KGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINLDCS-N------- 343 (391)
Q Consensus 274 ~~~--~g~v~nV~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~~Itf~ni~~~~~~~~~i~i~~~-~------- 343 (391)
..+ .+.|+||+++|+++.+..++++|++.. .+.+.++||+|+||++..... ++.|... .
T Consensus 295 g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~----------Gg~G~v~nI~f~ni~m~~V~~-pI~Idq~Y~~~~~~~~ 363 (431)
T PLN02218 295 GDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQ----------GGSGTASNIIFQNIQMENVKN-PIIIDQDYCDKSKCTS 363 (431)
T ss_pred CCCCCCceEEEEEEEccEEecCCcceEEeecC----------CCCeEEEEEEEEeEEEEcccc-cEEEEeeccCCCCCCC
Confidence 432 478999999999999999999999852 245789999999999998754 5666421 1
Q ss_pred ---CCceecEEEEeEEEEecCCCCccceeeec
Q 047738 344 ---NVACTDIKLENIELQSATEGKGVLSSCKN 372 (391)
Q Consensus 344 ---~~~i~~i~~~ni~~~~~~~~~~~~~~c~n 372 (391)
...++||+|+||+.+..+ ..+..+.|..
T Consensus 364 ~~s~v~I~nI~~~NI~gtsa~-~~ai~l~cs~ 394 (431)
T PLN02218 364 QQSAVQVKNVVYRNISGTSAS-DVAITFNCSK 394 (431)
T ss_pred CCCCeEEEEEEEEeEEEEecC-CcEEEEEECC
Confidence 123899999999998865 3445555643
No 13
>PLN02155 polygalacturonase
Probab=99.76 E-value=9.2e-16 Score=150.10 Aligned_cols=191 Identities=17% Similarity=0.208 Sum_probs=147.6
Q ss_pred eEEEeeeCcEEEeeeEEEcC--Cc--------------eeEEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEe
Q 047738 157 AVSFIQCNNVHINEIYVERS--PQ--------------VHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHT 220 (391)
Q Consensus 157 ~i~~~~~~nv~I~~i~i~~~--~~--------------~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n 220 (391)
.+.+.+.+++.|.+=+|... .. ..+.+..|++++|+++++.+++. .-+++..|++|+|++
T Consensus 108 wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~----w~i~~~~~~nv~i~~ 183 (394)
T PLN02155 108 WILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQV----SHMTLNGCTNVVVRN 183 (394)
T ss_pred eEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCC----eEEEEECeeeEEEEE
Confidence 46778888888877333211 11 23788999999999999999753 458888999999999
Q ss_pred eEEEE-------------------EEeEEEcCCc-eeEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCC--CCc
Q 047738 221 SIIAA-------------------VTYVNCGPGH-GISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQA--GKG 278 (391)
Q Consensus 221 ~~i~~-------------------i~n~~~~~g~-gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~--~~g 278 (391)
..|.+ |++|.+..++ +|+|++ +.+||+|+|+++.. .+|+.|++... ..+
T Consensus 184 v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~--------gs~nI~I~n~~c~~-GhGisIGS~g~~~~~~ 254 (394)
T PLN02155 184 VKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGP--------GTRNFLITKLACGP-GHGVSIGSLAKELNED 254 (394)
T ss_pred EEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCC--------CCceEEEEEEEEEC-CceEEeccccccCCCC
Confidence 99986 8888888775 799966 46899999999986 58999998632 257
Q ss_pred eEEEEEEEEEEEccCCceEEEEeeeCCCCCcCCCCCcceEEEEEEEEeEEEeecCCeeEEEec-C-C----------CCc
Q 047738 279 QVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINLDC-S-N----------NVA 346 (391)
Q Consensus 279 ~v~nV~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~~Itf~ni~~~~~~~~~i~i~~-~-~----------~~~ 346 (391)
.|+||+++|+++.+..++++|+++.. ..++.++||+|+||++..... ++.|.. + + ...
T Consensus 255 ~V~nV~v~n~~~~~t~~GirIKT~~~---------~~gG~v~nI~f~ni~m~~v~~-pI~i~q~Y~~~~~~~~~~~s~v~ 324 (394)
T PLN02155 255 GVENVTVSSSVFTGSQNGVRIKSWAR---------PSTGFVRNVFFQDLVMKNVEN-PIIIDQNYCPTHEGCPNEYSGVK 324 (394)
T ss_pred cEEEEEEEeeEEeCCCcEEEEEEecC---------CCCEEEEEEEEEeEEEcCccc-cEEEEecccCCCCCCcCCCCCeE
Confidence 89999999999999999999997422 235789999999999998754 666632 1 1 124
Q ss_pred eecEEEEeEEEEecCCCCccceeee
Q 047738 347 CTDIKLENIELQSATEGKGVLSSCK 371 (391)
Q Consensus 347 i~~i~~~ni~~~~~~~~~~~~~~c~ 371 (391)
++||+|+||+.+..+ ..+..+.|.
T Consensus 325 i~~It~~ni~gt~~~-~~a~~l~c~ 348 (394)
T PLN02155 325 ISQVTYKNIQGTSAT-QEAMKLVCS 348 (394)
T ss_pred EEEEEEEeeEEEecC-CceEEEEeC
Confidence 899999999998874 334455554
No 14
>PLN03010 polygalacturonase
Probab=99.75 E-value=1.3e-15 Score=149.28 Aligned_cols=191 Identities=16% Similarity=0.196 Sum_probs=147.2
Q ss_pred eEEEeeeCcEEEeeeEEEcC---Cce-eEEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE-------
Q 047738 157 AVSFIQCNNVHINEIYVERS---PQV-HIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA------- 225 (391)
Q Consensus 157 ~i~~~~~~nv~I~~i~i~~~---~~~-~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~------- 225 (391)
.+.|.+.+|+.|.|--..+. ..| .+.+..|++++|+++++.+++. .-+++..|++|+|++..|.+
T Consensus 132 wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~----~~i~i~~~~nv~i~~i~I~a~~~s~NT 207 (409)
T PLN03010 132 WISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPK----NHISIKTCNYVAISKINILAPETSPNT 207 (409)
T ss_pred eEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCc----eEEEEeccccEEEEEEEEeCCCCCCCC
Confidence 47789999999988555543 234 5889999999999999999763 35888899999999999986
Q ss_pred ------------EEeEEEcCCc-eeEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCCC--CceEEEEEEEEEEE
Q 047738 226 ------------VTYVNCGPGH-GISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAG--KGQVQHVEFSYMNF 290 (391)
Q Consensus 226 ------------i~n~~~~~g~-gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~--~g~v~nV~~~ni~i 290 (391)
|++|.+..++ +|+|++- ..++.|+++++.. .+||.|++.... ...|+||+|+|+++
T Consensus 208 DGiDi~~s~nV~I~n~~I~~gDDcIaiksg--------s~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i 278 (409)
T PLN03010 208 DGIDISYSTNINIFDSTIQTGDDCIAINSG--------SSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTF 278 (409)
T ss_pred CceeeeccceEEEEeeEEecCCCeEEecCC--------CCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEE
Confidence 7777777765 6888762 3467777777754 478888876432 25699999999999
Q ss_pred ccCCceEEEEeeeCCCCCcCCCCCcceEEEEEEEEeEEEeecCCeeEEEec-C-C----------CCceecEEEEeEEEE
Q 047738 291 TEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINLDC-S-N----------NVACTDIKLENIELQ 358 (391)
Q Consensus 291 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~~Itf~ni~~~~~~~~~i~i~~-~-~----------~~~i~~i~~~ni~~~ 358 (391)
.+..++++|++..+ ..+.++||+|+||++..... ++.|.. + + ..+++||+|+||+.+
T Consensus 279 ~~t~~GirIKt~~G----------~~G~v~nItf~nI~m~~v~~-pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT 347 (409)
T PLN03010 279 NQTTNGARIKTWQG----------GQGYARNISFENITLINTKN-PIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGT 347 (409)
T ss_pred eCCCcceEEEEecC----------CCEEEEEeEEEeEEEecCCc-cEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEE
Confidence 99999999998532 34689999999999998654 666642 2 1 125899999999998
Q ss_pred ecCCCCccceeeec
Q 047738 359 SATEGKGVLSSCKN 372 (391)
Q Consensus 359 ~~~~~~~~~~~c~n 372 (391)
..+ ..++.+.|+.
T Consensus 348 ~~~-~~~i~l~Cs~ 360 (409)
T PLN03010 348 TSN-ENAITLKCSA 360 (409)
T ss_pred eCC-CccEEEEeCC
Confidence 876 4567777754
No 15
>PLN02793 Probable polygalacturonase
Probab=99.74 E-value=1.5e-15 Score=150.98 Aligned_cols=204 Identities=17% Similarity=0.231 Sum_probs=153.9
Q ss_pred ceEEEEceEEecCCCCCCCCC-----------CCcccEEEEeeeceEEeeeeEEeCCCchhcccccCCCCCCCCCCCCCe
Q 047738 88 NISIQLSGTIKAPDGPSAWTS-----------EIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPT 156 (391)
Q Consensus 88 ~~~l~l~g~l~~~~~~~~~~~-----------~~~~~i~~~~~~nv~I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~ 156 (391)
+++|...|+|.+.. ..-|.. ....++.+.+++|++|+|--+.+.. . .
T Consensus 144 ni~ItG~G~IDG~G-~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp---~------------------~ 201 (443)
T PLN02793 144 HLTVEGGGTVNGMG-HEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ---Q------------------M 201 (443)
T ss_pred eEEEEeceEEECCC-cccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC---C------------------e
Confidence 78888889998744 222321 1234788999999999994322221 2 2
Q ss_pred eEEEeeeCcEEEeeeEEEcC----CceeEEEeccccEEEEeEEEeCCCCCCCCceEeec-CcccEEEEeeEEEE------
Q 047738 157 AVSFIQCNNVHINEIYVERS----PQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIA-RSHDVSVHTSIIAA------ 225 (391)
Q Consensus 157 ~i~~~~~~nv~I~~i~i~~~----~~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~------ 225 (391)
.+++.+|++|+|++++|.++ ..+++++..|++|+|+|++|.+.+ |+|.+. +|+||+|+||.+..
T Consensus 202 ~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gD-----DcIaik~~s~nI~I~n~~c~~GhGisI 276 (443)
T PLN02793 202 HIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGD-----DCISIVGNSSRIKIRNIACGPGHGISI 276 (443)
T ss_pred EEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCC-----CeEEecCCcCCEEEEEeEEeCCccEEE
Confidence 48899999999999999864 357899999999999999999954 688885 78999999998622
Q ss_pred ----------------EEeEEEcCC-ceeEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCCC----------Cc
Q 047738 226 ----------------VTYVNCGPG-HGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAG----------KG 278 (391)
Q Consensus 226 ----------------i~n~~~~~g-~gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~----------~g 278 (391)
++||++... .|+.|++... ..+.++||+|+|++|.+..++|.|...... ..
T Consensus 277 GSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g--~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v 354 (443)
T PLN02793 277 GSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG--GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAV 354 (443)
T ss_pred ecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC--CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCe
Confidence 556666544 6999988632 357899999999999999999999875421 24
Q ss_pred eEEEEEEEEEEEccC-CceEEEEeeeCCCCCcCCCCCcceEEEEEEEEeEEEeec
Q 047738 279 QVQHVEFSYMNFTEV-QNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSA 332 (391)
Q Consensus 279 ~v~nV~~~ni~i~~~-~~~i~i~~~~~~~~~~~~~~~~~~~i~~Itf~ni~~~~~ 332 (391)
.|+||+|+|++.+.. +.++.+.- .+..+++||+|+||+++..
T Consensus 355 ~I~nI~~~nI~Gt~~~~~ai~l~c------------s~~~pc~ni~l~nI~l~~~ 397 (443)
T PLN02793 355 KVENISFVHIKGTSATEEAIKFAC------------SDSSPCEGLYLEDVQLLSS 397 (443)
T ss_pred EEEeEEEEEEEEEEcccccEEEEe------------CCCCCEeeEEEEeeEEEec
Confidence 689999999998764 34565542 1234699999999999864
No 16
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.73 E-value=9.8e-16 Score=149.77 Aligned_cols=215 Identities=13% Similarity=0.155 Sum_probs=119.0
Q ss_pred CCEEEecCCCeEEEee---eeecCCCCCcceEEEEc-eEEecCCCCCCCCCCCcccEEEEeeeceEEeeeeEEeCCCchh
Q 047738 62 TPTMIIPKGKTFLVHP---ITFSGPCKSSNISIQLS-GTIKAPDGPSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKW 137 (391)
Q Consensus 62 g~~v~iP~G~~y~~~~---i~l~~~~~s~~~~l~l~-g~l~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~Idg~g~~~ 137 (391)
..+|||+|| +|.++. +.|+ +...+|||+ |++.. +++......+|+.|+|+|+|.|....|
T Consensus 232 ~~~lYF~PG-Vy~ig~~~~l~L~----sn~~~VYlApGAyVk-----------GAf~~~~~~~nv~i~G~GVLSGe~Yvy 295 (582)
T PF03718_consen 232 KDTLYFKPG-VYWIGSDYHLRLP----SNTKWVYLAPGAYVK-----------GAFEYTDTQQNVKITGRGVLSGEQYVY 295 (582)
T ss_dssp SSEEEE-SE-EEEEBCTC-EEE-----TT--EEEE-TTEEEE-----------S-EEE---SSEEEEESSSEEE-TTS-T
T ss_pred cceEEeCCc-eEEeCCCccEEEC----CCccEEEEcCCcEEE-----------EEEEEccCCceEEEEeeEEEcCcceeE
Confidence 589999999 999975 7886 524689998 66544 344444578999999999999998776
Q ss_pred cccccCCCC----CCCCCCCCCeeEE---EeeeCcEEEeeeEEEcCCceeEEEeccc----cEEEEeEEEeCCCCCCCCc
Q 047738 138 WDQSCKHHP----GKDCSERAPTAVS---FIQCNNVHINEIYVERSPQVHIVVDYSQ----DVHFKSLIIDSPETSPNTD 206 (391)
Q Consensus 138 ~~~~~~~~~----~~~~~~~rp~~i~---~~~~~nv~I~~i~i~~~~~~~i~~~~~~----~v~i~n~~I~~~~~~~~~D 206 (391)
......... ....+-..-+++. ...++++.++|++|.++|.|.+.+...+ +..|+|.++...++ .++|
T Consensus 296 ~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~-~qtD 374 (582)
T PF03718_consen 296 EADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWY-FQTD 374 (582)
T ss_dssp TBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---C-TT--
T ss_pred eccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEE-eccC
Confidence 432111000 0000001223454 4455689999999999999999998555 48999999998765 6899
Q ss_pred eEeecCcccEEEEeeEEEE-------------EEeEEEcCCc---eeEEcccCCCCCcCcEEEEEEEeeEEeCCC-----
Q 047738 207 GIHIARSHDVSVHTSIIAA-------------VTYVNCGPGH---GISIGSLGKNGEEVKVENITVRHVNFCKTT----- 265 (391)
Q Consensus 207 Gi~~~~s~nv~I~n~~i~~-------------i~n~~~~~g~---gi~igs~~~~~~~~~~~ni~i~N~~~~~~~----- 265 (391)
||.+. ++-+|+||++++ +++++++..+ -|.+|.. ...++||.|+|+.+.+..
T Consensus 375 Gi~ly--~nS~i~dcF~h~nDD~iKlYhS~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~~~~ 447 (582)
T PF03718_consen 375 GIELY--PNSTIRDCFIHVNDDAIKLYHSNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHNRWIWHN 447 (582)
T ss_dssp --B----TT-EEEEEEEEESS-SEE--STTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE---SSGG
T ss_pred Ccccc--CCCeeeeeEEEecCchhheeecCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEeeeeeccc
Confidence 99997 577889999998 6777765432 2666653 345778888887777652
Q ss_pred ----eEEEEEEeCC---C-------CceEEEEEEEEEEEccCC-ceEEEE
Q 047738 266 ----NGARIKTWQA---G-------KGQVQHVEFSYMNFTEVQ-NPIIID 300 (391)
Q Consensus 266 ----~gi~i~~~~~---~-------~g~v~nV~~~ni~i~~~~-~~i~i~ 300 (391)
.+|.-.+..- + .-.|++++|+|+++++.- ..+.|.
T Consensus 448 ~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~ 497 (582)
T PF03718_consen 448 NYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIY 497 (582)
T ss_dssp CTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE-
T ss_pred CCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEe
Confidence 2443322111 0 135677788888877643 334454
No 17
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.73 E-value=3e-15 Score=147.12 Aligned_cols=206 Identities=17% Similarity=0.224 Sum_probs=154.6
Q ss_pred ceEEEEceEEecCCCCCCCCC----------CCcccEEEEeeeceEEeeeeEEeCCCchhcccccCCCCCCCCCCCCCee
Q 047738 88 NISIQLSGTIKAPDGPSAWTS----------EIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTA 157 (391)
Q Consensus 88 ~~~l~l~g~l~~~~~~~~~~~----------~~~~~i~~~~~~nv~I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~ 157 (391)
+++|...|+|.+... .-|.. ....++.+..++|+.|+|- .-..+.+ ..
T Consensus 123 ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gi---tl~nSp~------------------w~ 180 (404)
T PLN02188 123 GLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGI---TSVNSKF------------------FH 180 (404)
T ss_pred eEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeCe---EEEcCCC------------------eE
Confidence 788888899988553 33321 1134678889999999992 2222222 35
Q ss_pred EEEeeeCcEEEeeeEEEcC----CceeEEEeccccEEEEeEEEeCCCCCCCCceEeec-CcccEEEEeeEEEE-------
Q 047738 158 VSFIQCNNVHINEIYVERS----PQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIA-RSHDVSVHTSIIAA------- 225 (391)
Q Consensus 158 i~~~~~~nv~I~~i~i~~~----~~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~------- 225 (391)
+++..|++|+|++++|.++ ..+++++..|++|+|+|++|.+.+ |+|.+. +++||+|+|+.+..
T Consensus 181 i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GD-----DcIaiksg~~nI~I~n~~c~~ghGisiG 255 (404)
T PLN02188 181 IALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGD-----DCISIGQGNSQVTITRIRCGPGHGISVG 255 (404)
T ss_pred EEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCC-----cEEEEccCCccEEEEEEEEcCCCcEEeC
Confidence 8999999999999999864 347899999999999999999954 688886 67899999988643
Q ss_pred ---------------EEeEEEcCC-ceeEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCC----------CCce
Q 047738 226 ---------------VTYVNCGPG-HGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQA----------GKGQ 279 (391)
Q Consensus 226 ---------------i~n~~~~~g-~gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~----------~~g~ 279 (391)
++||++... +|+.|++.......+.++||+|+|++|.+..++|.|..... ....
T Consensus 256 SlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~ 335 (404)
T PLN02188 256 SLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVT 335 (404)
T ss_pred CCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcE
Confidence 677777654 69999885432235789999999999999999999986321 1367
Q ss_pred EEEEEEEEEEEccC-CceEEEEeeeCCCCCcCCCCCcceEEEEEEEEeEEEeec
Q 047738 280 VQHVEFSYMNFTEV-QNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSA 332 (391)
Q Consensus 280 v~nV~~~ni~i~~~-~~~i~i~~~~~~~~~~~~~~~~~~~i~~Itf~ni~~~~~ 332 (391)
|+||+|+||+.+.. ..++.+.- .+..+++||+|+||+++..
T Consensus 336 I~nIt~~nI~gt~~~~~a~~l~c------------s~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 336 LSDIYFKNIRGTSSSQVAVLLKC------------SRGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred EEeEEEEEEEEEecCceEEEEEE------------CCCCCEeeEEEEeeEEEec
Confidence 99999999999764 34555532 1234699999999999864
No 18
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.70 E-value=5.6e-15 Score=142.62 Aligned_cols=193 Identities=20% Similarity=0.254 Sum_probs=149.1
Q ss_pred CeeEEEeeeCcEEEee-eEEEcC-----------------CceeEEEeccccEEEEeEEEeCCCCCCCCceEeecCcccE
Q 047738 155 PTAVSFIQCNNVHINE-IYVERS-----------------PQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDV 216 (391)
Q Consensus 155 p~~i~~~~~~nv~I~~-i~i~~~-----------------~~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv 216 (391)
...|.+.+++++.|.| =+|... ....+.+..|++++|+++++.+++. ..+++..|++|
T Consensus 51 ~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~----w~~~~~~~~nv 126 (326)
T PF00295_consen 51 SALIYAENAENITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPF----WHIHINDCDNV 126 (326)
T ss_dssp SEEEEEESEEEEECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SS----ESEEEESEEEE
T ss_pred cEEEEEEceEEEEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCCe----eEEEEEccCCe
Confidence 4578888999999987 344211 1134889999999999999999753 35888899999
Q ss_pred EEEeeEEEE-------------------EEeEEEcCCc-eeEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCCC
Q 047738 217 SVHTSIIAA-------------------VTYVNCGPGH-GISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAG 276 (391)
Q Consensus 217 ~I~n~~i~~-------------------i~n~~~~~g~-gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~ 276 (391)
+|++..|.+ |++|.+..++ +|++++. ..||+|+||++.+ .+|+.|.+...+
T Consensus 127 ~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~--------~~ni~v~n~~~~~-ghGisiGS~~~~ 197 (326)
T PF00295_consen 127 TISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSG--------SGNILVENCTCSG-GHGISIGSEGSG 197 (326)
T ss_dssp EEESEEEEEGGGCTS--SEEEESEEEEEEESEEEESSSESEEESSE--------ECEEEEESEEEES-SSEEEEEEESSS
T ss_pred EEcceEEEecCCCCCcceEEEEeeeEEEEEEeecccccCccccccc--------ccceEEEeEEEec-cccceeeeccCC
Confidence 999999998 7888888775 7999773 3399999999976 488999987543
Q ss_pred C--ceEEEEEEEEEEEccCCceEEEEeeeCCCCCcCCCCCcceEEEEEEEEeEEEeecCCeeEEEecC---------C--
Q 047738 277 K--GQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINLDCS---------N-- 343 (391)
Q Consensus 277 ~--g~v~nV~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~~Itf~ni~~~~~~~~~i~i~~~---------~-- 343 (391)
+ ..|+||+|+|+++.+..+++.|++.. ...+.++||+|+||++.... .++.+... +
T Consensus 198 ~~~~~i~nV~~~n~~i~~t~~gi~iKt~~----------~~~G~v~nI~f~ni~~~~v~-~pi~i~~~y~~~~~~~~~~~ 266 (326)
T PF00295_consen 198 GSQNDIRNVTFENCTIINTDNGIRIKTWP----------GGGGYVSNITFENITMENVK-YPIFIDQDYRDGGPCGKPPS 266 (326)
T ss_dssp SE--EEEEEEEEEEEEESESEEEEEEEET----------TTSEEEEEEEEEEEEEEEES-EEEEEEEEECTTEESSCSSS
T ss_pred ccccEEEeEEEEEEEeeccceEEEEEEec----------ccceEEeceEEEEEEecCCc-eEEEEEeccccccccCcccC
Confidence 2 36999999999999999999999842 34578999999999999876 57666521 1
Q ss_pred CCceecEEEEeEEEEecCCCCccceeeec
Q 047738 344 NVACTDIKLENIELQSATEGKGVLSSCKN 372 (391)
Q Consensus 344 ~~~i~~i~~~ni~~~~~~~~~~~~~~c~n 372 (391)
...++||+|+||+.+..+ ..+..+.|..
T Consensus 267 ~~~i~nI~~~nitg~~~~-~~~i~i~~~~ 294 (326)
T PF00295_consen 267 GVSISNITFRNITGTSAG-SSAISIDCSP 294 (326)
T ss_dssp SSEEEEEEEEEEEEEEST-SEEEEEE-BT
T ss_pred CceEEEEEEEeeEEEecc-ceEEEEEECC
Confidence 135999999999999876 3455555544
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.65 E-value=3e-14 Score=136.48 Aligned_cols=232 Identities=13% Similarity=0.151 Sum_probs=127.2
Q ss_pred HHHHHHHHhhcCCCCCEEEecCCCeEEE-eeeeecCCCCCcceEEEEce---E-EecCCCCCCCCCCCcccEEEEeeece
Q 047738 48 YAKAWNDACKANAQTPTMIIPKGKTFLV-HPITFSGPCKSSNISIQLSG---T-IKAPDGPSAWTSEIGRWIAFGNITGL 122 (391)
Q Consensus 48 iq~Ai~~a~~~~~~g~~v~iP~G~~y~~-~~i~l~~~~~s~~~~l~l~g---~-l~~~~~~~~~~~~~~~~i~~~~~~nv 122 (391)
||+|+++|.+ |++|+||+| +|.+ +++.+. ++ +++|+.+| + |.+.... .....+.. .+++|
T Consensus 1 iQ~Ai~~A~~----GDtI~l~~G-~Y~~~~~l~I~---~~-~Iti~G~g~~~tvid~~~~~-----~~~~~i~v-~a~~V 65 (314)
T TIGR03805 1 LQEALIAAQP----GDTIVLPEG-VFQFDRTLSLD---AD-GVTIRGAGMDETILDFSGQV-----GGAEGLLV-TSDDV 65 (314)
T ss_pred CHhHHhhCCC----CCEEEECCC-EEEcceeEEEe---CC-CeEEEecCCCccEEecccCC-----CCCceEEE-EeCCe
Confidence 6999985443 899999999 9987 567775 24 77776654 2 2221110 00122222 24666
Q ss_pred EEeeeeEEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEE-------cCCceeEEEeccccEEEEeEE
Q 047738 123 NINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVE-------RSPQVHIVVDYSQDVHFKSLI 195 (391)
Q Consensus 123 ~I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~-------~~~~~~i~~~~~~~v~i~n~~ 195 (391)
+|++.- +... ....|.+..|++++|+++++. ....+++.+..|++++|++++
T Consensus 66 tI~~lt-I~~~--------------------~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~ 124 (314)
T TIGR03805 66 TLSDLA-VENT--------------------KGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSY 124 (314)
T ss_pred EEEeeE-EEcC--------------------CCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCE
Confidence 666632 2111 112455666667777776664 123456666667777777777
Q ss_pred EeCCCCCCCCceEeecCcccEEEEeeEEEEEEeEEEcCCceeEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCC
Q 047738 196 IDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQA 275 (391)
Q Consensus 196 I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~i~n~~~~~g~gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~ 275 (391)
+.... ..||.+..|++++|++|.+.. ...||.+.. ..++.++|+++.+...|+.+-..++
T Consensus 125 i~g~~----d~GIyv~~s~~~~v~nN~~~~-------n~~GI~i~~---------S~~~~v~~N~~~~N~~Gi~v~~~p~ 184 (314)
T TIGR03805 125 VRGAS----DAGIYVGQSQNIVVRNNVAEE-------NVAGIEIEN---------SQNADVYNNIATNNTGGILVFDLPG 184 (314)
T ss_pred EECCC----cccEEECCCCCeEEECCEEcc-------CcceEEEEe---------cCCcEEECCEEeccceeEEEeecCC
Confidence 76532 236666666666666666642 234665532 4567777777777767777754443
Q ss_pred CC-ceEEEEEEEEEEEccCCce-EEEEeeeCCCCCcCCCCCcceEE----EEEEEEeEEEeecCCeeEEEe
Q 047738 276 GK-GQVQHVEFSYMNFTEVQNP-IIIDQYYCDQKDVCAKTSTGVHI----SDVRYLNATGTSATDVAINLD 340 (391)
Q Consensus 276 ~~-g~v~nV~~~ni~i~~~~~~-i~i~~~~~~~~~~~~~~~~~~~i----~~Itf~ni~~~~~~~~~i~i~ 340 (391)
.. ..-+++++++.++.+.... ..+....-. ..+...+.+ ++++++|-++.......+.+.
T Consensus 185 ~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~-----~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~ 250 (314)
T TIGR03805 185 LPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVA-----SVPAGTGVVVMANRDVEIFGNVISNNDTANVLIS 250 (314)
T ss_pred CCcCCccceEEECCEEECCCCCCCcccCCcee-----cCCCCcEEEEEcccceEEECCEEeCCcceeEEEE
Confidence 21 2335666666666543111 111000000 001122223 788888888888776666554
No 20
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=99.24 E-value=1.1e-09 Score=99.78 Aligned_cols=242 Identities=16% Similarity=0.263 Sum_probs=136.2
Q ss_pred HHHHHHHHhhhccccccCCCCceEEEeccCccCCCCchhHHHHHHHHHHHhhcCCCCCEEEecCCCeEE-E-eeeeecCC
Q 047738 6 MCILILLSTLATHINVNADDQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFL-V-HPITFSGP 83 (391)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~v~dfGa~~dg~tddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~-~-~~i~l~~~ 83 (391)
+-..-+|..+..+++.+..+..++++.||.. .|.-++|.+|+.. +.||.+|+|-+.. + ..+.++
T Consensus 12 ~ta~sala~~hsp~~ra~~~~~~vni~dy~~-----~dwiasfkqaf~e-------~qtvvvpagl~cenint~ifip-- 77 (464)
T PRK10123 12 LTASSALAFLHTPFARALPARQSVNINDYNP-----HDWIASFKQAFSE-------GQTVVVPAGLVCDNINTGIFIP-- 77 (464)
T ss_pred hhhhhHHHHhcCHhhhhcCCCceeehhhcCc-----ccHHHHHHHHhcc-------CcEEEecCccEecccccceEeC--
Confidence 3344455667888888888999999999965 6889999999964 8999999993332 2 357776
Q ss_pred CCCcceEEEEceEEecCCCCCCCCCCCcccEEEEeeeceEEeee--e-----EEeCCCchhcccccCCCCCCCCCCCCCe
Q 047738 84 CKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLNINGR--G-----LFDGNGQKWWDQSCKHHPGKDCSERAPT 156 (391)
Q Consensus 84 ~~s~~~~l~l~g~l~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~--G-----~Idg~g~~~~~~~~~~~~~~~~~~~rp~ 156 (391)
. +.||.+.|.|.+-. .+.++..+|+ .+.|+ | ++|-+|+..-- ++. ..+.+.|.
T Consensus 78 --~-gktl~v~g~l~gng--------rgrfvlqdg~---qv~ge~~g~~hnitldvrgsdc~i-----kgi-amsgfgpv 137 (464)
T PRK10123 78 --P-GKTLHILGSLRGNG--------RGRFVLQDGS---QVTGEEGGSMHNITLDVRGSDCTI-----KGL-AMSGFGPV 137 (464)
T ss_pred --C-CCeEEEEEEeecCC--------ceeEEEecCC---EeecCCCceeeeEEEeeccCceEE-----eee-eecccCce
Confidence 5 99999999887622 1334443332 22221 1 22322221100 000 01112222
Q ss_pred e-EEEee-----eCcEEEeeeEEEcCCce----eEEEeccccEEEEeEEEeCCCCCCCCceEeec---CcccEEEEeeEE
Q 047738 157 A-VSFIQ-----CNNVHINEIYVERSPQV----HIVVDYSQDVHFKSLIIDSPETSPNTDGIHIA---RSHDVSVHTSII 223 (391)
Q Consensus 157 ~-i~~~~-----~~nv~I~~i~i~~~~~~----~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~---~s~nv~I~n~~i 223 (391)
. |.+.. -+|++|+++++..+.+- ++| ...+++.|.|+++.. ...|.|.-. .-+++.|++-.|
T Consensus 138 tqiyiggk~prvmrnl~id~itv~~anyailrqgfh-nq~dgaritn~rfs~----lqgdaiewnvaindr~ilisdhvi 212 (464)
T PRK10123 138 TQIYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFH-NQIIGANITNCKFSD----LQGDAIEWNVAINDRDILISDHVI 212 (464)
T ss_pred eEEEEcCCCchhhhccEEccEEEeeccHHHHhhhhh-hccccceeecccccc----ccCceEEEEEEecccceeeehheh
Confidence 1 11111 14667777777654321 111 122345556665544 234444421 234555555444
Q ss_pred EEEEeEEEcCC---ceeEEcccC-----CCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCCCCceEEEEEEEEEEEc
Q 047738 224 AAVTYVNCGPG---HGISIGSLG-----KNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFT 291 (391)
Q Consensus 224 ~~i~n~~~~~g---~gi~igs~~-----~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~~g~v~nV~~~ni~i~ 291 (391)
+.+.|.+| +||.||-.+ .|++...+.|+++.|++-.++..-+.+.. +..-.++||.-+||+-+
T Consensus 213 ---e~inctngkinwgigiglagstydn~ype~q~vknfvvanitgs~crqlvhven--gkhfvirnvkaknitpd 283 (464)
T PRK10123 213 ---ERINCTNGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVEN--GKHFVIRNIKAKNITPD 283 (464)
T ss_pred ---eeecccCCcccceeeeeeccccccCCCchhhhhhhEEEEeccCcChhheEEecC--CcEEEEEeeeccccCCC
Confidence 44455554 477777655 33457888999999998888766555542 33346666666666543
No 21
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.07 E-value=2.9e-09 Score=107.24 Aligned_cols=140 Identities=15% Similarity=0.164 Sum_probs=115.2
Q ss_pred CceeEEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE------------------EEeEEEcCCc-ee
Q 047738 177 PQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA------------------VTYVNCGPGH-GI 237 (391)
Q Consensus 177 ~~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~------------------i~n~~~~~g~-gi 237 (391)
+...+++..|+||.+++++|.+++. .++|+..|++++++|..|.+ |++|++..++ .|
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtgDD~I 312 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDTGDDCI 312 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEecCCceE
Confidence 4457889999999999999999753 68999999999999999887 7888888765 68
Q ss_pred EEcccCCCC---CcCcEEEEEEEeeEEeCCCeEEEEEEeCCCCceEEEEEEEEEEEccCCceEEEEeeeCCCCCcCCCCC
Q 047738 238 SIGSLGKNG---EEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTS 314 (391)
Q Consensus 238 ~igs~~~~~---~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~~g~v~nV~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~ 314 (391)
++.+...-. -....++|+|+||.|.....++.+.++.+ |.|+||++||+.|.+...+++|++...
T Consensus 313 ~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~--ggv~ni~ved~~~~~~d~GLRikt~~~---------- 380 (542)
T COG5434 313 AIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMG--GGVQNITVEDCVMDNTDRGLRIKTNDG---------- 380 (542)
T ss_pred EeecccCCcccccccccccEEEecceecccccceEeeeecC--CceeEEEEEeeeeccCcceeeeeeecc----------
Confidence 887743211 13567999999999998877888888765 899999999999999999999998533
Q ss_pred cceEEEEEEEEeEEEeec
Q 047738 315 TGVHISDVRYLNATGTSA 332 (391)
Q Consensus 315 ~~~~i~~Itf~ni~~~~~ 332 (391)
.++.++||+|+++.+...
T Consensus 381 ~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 381 RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred cceeEEEEEEecccccCc
Confidence 346789999998887654
No 22
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.63 E-value=1.3e-05 Score=79.69 Aligned_cols=229 Identities=14% Similarity=0.153 Sum_probs=113.1
Q ss_pred CCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCC------CCCC--CC-------CcccEE---EEeeeceE
Q 047738 62 TPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGP------SAWT--SE-------IGRWIA---FGNITGLN 123 (391)
Q Consensus 62 g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~------~~~~--~~-------~~~~i~---~~~~~nv~ 123 (391)
..+|||-|| -|.-+.+.+... ++ ++.+...|+|.+..-. ..|. ++ .-.++- ..+..+..
T Consensus 256 ~~~VYlApG-AyVkGAf~~~~~-~~-nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~ 332 (582)
T PF03718_consen 256 TKWVYLAPG-AYVKGAFEYTDT-QQ-NVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLT 332 (582)
T ss_dssp --EEEE-TT-EEEES-EEE----SS-EEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEE
T ss_pred ccEEEEcCC-cEEEEEEEEccC-Cc-eEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEE
Confidence 689999999 999888766521 24 6777677888752211 1111 00 001121 22344555
Q ss_pred EeeeeEEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeC----cEEEeeeEEEcCCceeEE-EeccccEEEEeEEEeC
Q 047738 124 INGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCN----NVHINEIYVERSPQVHIV-VDYSQDVHFKSLIIDS 198 (391)
Q Consensus 124 I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~----nv~I~~i~i~~~~~~~i~-~~~~~~v~i~n~~I~~ 198 (391)
+.| =+|.- ..+ +.+.+.+-+ ...|++.+...+..|.-+ ++-+++-+|+||-+..
T Consensus 333 ~~G-iTI~~--pP~------------------~Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~nS~i~dcF~h~ 391 (582)
T PF03718_consen 333 CEG-ITIND--PPF------------------HSMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYPNSTIRDCFIHV 391 (582)
T ss_dssp EES--EEE----SS-------------------SEEEESSSGGGEEEEEEEEEEE---CTT----B--TT-EEEEEEEEE
T ss_pred EEe-eEecC--CCc------------------ceEEecCCccccccceeeceeeeeeEEeccCCccccCCCeeeeeEEEe
Confidence 555 12211 111 124455333 478999999887665433 3345788899999988
Q ss_pred CCCCCCCceEeecCcccEEEEeeEEEE--------------------EEeEEE-cC---------CceeEEcccCCC---
Q 047738 199 PETSPNTDGIHIARSHDVSVHTSIIAA--------------------VTYVNC-GP---------GHGISIGSLGKN--- 245 (391)
Q Consensus 199 ~~~~~~~DGi~~~~s~nv~I~n~~i~~--------------------i~n~~~-~~---------g~gi~igs~~~~--- 245 (391)
+.|+|.++. .++.|++|.+.. ++++.+ +. ..+|- ++...+
T Consensus 392 -----nDD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I~-~ss~~y~~~ 464 (582)
T PF03718_consen 392 -----NDDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAIL-GSSPFYDDM 464 (582)
T ss_dssp -----SS-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-ECE-EE--BTTS-
T ss_pred -----cCchhheee-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCceeE-ecccccccc
Confidence 457888887 589999999887 444432 11 12432 222222
Q ss_pred ------CCcCcEEEEEEEeeEEeCCCeE-EEEEEeCCCCceEEEEEEEEEEEc--cCC---ce-EEEEeeeCCCCCcCCC
Q 047738 246 ------GEEVKVENITVRHVNFCKTTNG-ARIKTWQAGKGQVQHVEFSYMNFT--EVQ---NP-IIIDQYYCDQKDVCAK 312 (391)
Q Consensus 246 ------~~~~~~~ni~i~N~~~~~~~~g-i~i~~~~~~~g~v~nV~~~ni~i~--~~~---~~-i~i~~~~~~~~~~~~~ 312 (391)
.+...+++++|+|+++.+...+ ++|... ....|+.++|+.++ +.. .. -.++..+.....
T Consensus 465 ~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~pl----qn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~~---- 536 (582)
T PF03718_consen 465 ASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPL----QNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMANN---- 536 (582)
T ss_dssp SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--S----EEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT-----
T ss_pred cCCCCCCcccceeeEEEEeEEEecccceeEEEeec----CCCcceEEEEeecccccCcccccceeecccccccccc----
Confidence 1134568999999999997554 566643 56778888888887 221 11 112222222111
Q ss_pred CCcceEEEEEEEEeEEEee
Q 047738 313 TSTGVHISDVRYLNATGTS 331 (391)
Q Consensus 313 ~~~~~~i~~Itf~ni~~~~ 331 (391)
......+|.|+|.++-+
T Consensus 537 --~~~~~~gi~i~N~tVgg 553 (582)
T PF03718_consen 537 --KQNDTMGIIIENWTVGG 553 (582)
T ss_dssp ---B--EEEEEEEEEEETT
T ss_pred --ccccccceEEEeEEECC
Confidence 13456777777777654
No 23
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.50 E-value=1.2e-05 Score=77.30 Aligned_cols=195 Identities=17% Similarity=0.192 Sum_probs=126.1
Q ss_pred ccEEEEeeeceEEeeeeEEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCceeEEEeccccEEE
Q 047738 112 RWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHF 191 (391)
Q Consensus 112 ~~i~~~~~~nv~I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~~i~~~~~~~v~i 191 (391)
..|...++++++|++. .+.+.+..-+. . +...|.+..|++++|++.++.+....++.+..|++++|
T Consensus 78 ~GI~v~~s~~i~I~n~-~i~~~~~~~~~---------~----~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~~~~v 143 (314)
T TIGR03805 78 DGVKVKGSDGIIIRRL-RVEWTGGPKSS---------N----GAYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQNIVV 143 (314)
T ss_pred CeEEEeCCCCEEEEee-EEEeccCcccc---------C----CcceEEEeccCCEEEECCEEECCCcccEEECCCCCeEE
Confidence 3456677888888873 34333221111 1 34569999999999999999998878999999999999
Q ss_pred EeEEEeCCCCCCCCceEeecCcccEEEEeeEEEEEEeEEEcCCceeEEcccCCCCCcCcEEEEEEEeeEEeCCCe-----
Q 047738 192 KSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTN----- 266 (391)
Q Consensus 192 ~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~i~n~~~~~g~gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~----- 266 (391)
+++++.. +..||++..|.++.|+++.+.. ...|+.+.+.... .....++++|+++++.+...
T Consensus 144 ~nN~~~~-----n~~GI~i~~S~~~~v~~N~~~~-------N~~Gi~v~~~p~~-~~~~s~~~~v~~N~i~~n~~~n~~~ 210 (314)
T TIGR03805 144 RNNVAEE-----NVAGIEIENSQNADVYNNIATN-------NTGGILVFDLPGL-PQPGGSNVRVFDNIIFDNNTPNFAP 210 (314)
T ss_pred ECCEEcc-----CcceEEEEecCCcEEECCEEec-------cceeEEEeecCCC-CcCCccceEEECCEEECCCCCCCcc
Confidence 9999976 4579999999999999988775 2346666433111 12356899999999987532
Q ss_pred -EEEEEEeCCCCceE----EEEEEEEEEEccCC-ceEEEEeeeCCC-CCcCCCCCcceEEEEEEEEeEEEeecC
Q 047738 267 -GARIKTWQAGKGQV----QHVEFSYMNFTEVQ-NPIIIDQYYCDQ-KDVCAKTSTGVHISDVRYLNATGTSAT 333 (391)
Q Consensus 267 -gi~i~~~~~~~g~v----~nV~~~ni~i~~~~-~~i~i~~~~~~~-~~~~~~~~~~~~i~~Itf~ni~~~~~~ 333 (391)
|-.+...+.+.|.+ +++.|+|.++.+.. .++.+....... .....++.-.+..++|.+.+-+.+..+
T Consensus 211 ~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~N~~~~~g 284 (314)
T TIGR03805 211 AGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVLISSYHSTGLPDQPPDDGFDPYPRNISIHDNTFSDGG 284 (314)
T ss_pred cCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEEEEecccccCCCCCcCCCccCCCcceEEEccEeecCC
Confidence 11121223333444 78999999998875 456664432211 000011112233477777776666654
No 24
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.38 E-value=2e-05 Score=72.26 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhcCCCCCEEEecCCCeEEEe-----eeeecCCCCCcceEEEEce
Q 047738 45 SLAYAKAWNDACKANAQTPTMIIPKGKTFLVH-----PITFSGPCKSSNISIQLSG 95 (391)
Q Consensus 45 t~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~-----~i~l~~~~~s~~~~l~l~g 95 (391)
.+-|++|++.|.+ |.+|++-|| +|.-. ||.++ + +++|+.+.
T Consensus 15 ~~Ti~~A~~~a~~----g~~i~l~~G-tY~~~~ge~fPi~i~----~-gVtl~G~~ 60 (246)
T PF07602_consen 15 FKTITKALQAAQP----GDTIQLAPG-TYSEATGETFPIIIK----P-GVTLIGNE 60 (246)
T ss_pred HHHHHHHHHhCCC----CCEEEECCc-eeccccCCcccEEec----C-CeEEeecc
Confidence 5579999985443 899999999 99764 46665 5 77776653
No 25
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.32 E-value=3e-06 Score=72.21 Aligned_cols=118 Identities=19% Similarity=0.267 Sum_probs=81.7
Q ss_pred eEEEeeeCcEEEeeeEEEcCCceeEEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEEEEeEEEcCCce
Q 047738 157 AVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHG 236 (391)
Q Consensus 157 ~i~~~~~~nv~I~~i~i~~~~~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~i~n~~~~~g~g 236 (391)
.|.+....+++|++.+|.+....++++..+..++|++++|.. ...|+.+....++++++|.+... ..|
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~-------~~~ 69 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDN-------GSG 69 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES--------SEE
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEc-------cce
Confidence 367777888999999999999999999999999999999998 34689998888999999888751 144
Q ss_pred eEEcccCCCCCcCcEEEEEEEeeEEeCCCe-EEEEEEeCCCCceEEEEEEEEEEEccCC-ceEEEEe
Q 047738 237 ISIGSLGKNGEEVKVENITVRHVNFCKTTN-GARIKTWQAGKGQVQHVEFSYMNFTEVQ-NPIIIDQ 301 (391)
Q Consensus 237 i~igs~~~~~~~~~~~ni~i~N~~~~~~~~-gi~i~~~~~~~g~v~nV~~~ni~i~~~~-~~i~i~~ 301 (391)
+.+. ...+++|++|.+.+... ||.+.. ..++++++++++.+.. .++.+..
T Consensus 70 i~~~---------~~~~~~i~~~~i~~~~~~gi~~~~------~~~~~~i~~n~~~~~~~~gi~~~~ 121 (158)
T PF13229_consen 70 IYVS---------GSSNITIENNRIENNGDYGIYISN------SSSNVTIENNTIHNNGGSGIYLEG 121 (158)
T ss_dssp EECC---------S-CS-EEES-EEECSSS-SCE-TC------EECS-EEES-EEECCTTSSCEEEE
T ss_pred EEEE---------ecCCceecCcEEEcCCCccEEEec------cCCCEEEEeEEEEeCcceeEEEEC
Confidence 4442 35678888888888766 777752 2346788888887765 6666654
No 26
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.31 E-value=4.1e-05 Score=75.12 Aligned_cols=209 Identities=13% Similarity=0.158 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCC-CCcceEEEEc--eEEecCCCCCCCCCCCcccEEEEeee
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPC-KSSNISIQLS--GTIKAPDGPSAWTSEIGRWIAFGNIT 120 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~-~s~~~~l~l~--g~l~~~~~~~~~~~~~~~~i~~~~~~ 120 (391)
+.++||+||++|.+ |++|+++.| +|.-..|.+.+.. +++++||+-+ |....+. ...+.+.| +
T Consensus 3 s~~~lq~Ai~~a~p----GD~I~L~~G-ty~~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G---------~s~l~i~G-~ 67 (425)
T PF14592_consen 3 SVAELQSAIDNAKP----GDTIVLADG-TYKDVEIVFKGSGTAAKPITLRAENPGKVVITG---------ESNLRISG-S 67 (425)
T ss_dssp SHHHHHHHHHH--T----T-EEEE-SE-EEET-EEEE-S--BTTB-EEEEESSTTSEEEEE---------S-EEEE-S-S
T ss_pred CHHHHHHHHHhCCC----CCEEEECCc-eeecceEEEEecccCCCCEEEEecCCCeEEEec---------ceeEEEEe-e
Confidence 46899999986555 999999999 9974345554211 1124555443 2111100 12233332 4
Q ss_pred ceEEeeeeEEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCC--c----eeEE---EeccccEEE
Q 047738 121 GLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSP--Q----VHIV---VDYSQDVHF 191 (391)
Q Consensus 121 nv~I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~--~----~~i~---~~~~~~v~i 191 (391)
.++|+|.=.-+|... ....-.+|...-. ..+.+.++.+..|.+.. . .... ....++-.|
T Consensus 68 yl~v~GL~F~ng~~~-----------~~~vi~fr~~~~~-~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~Nrv 135 (425)
T PF14592_consen 68 YLVVSGLKFKNGYTP-----------TGAVISFRNGGDA-SYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRV 135 (425)
T ss_dssp SEEEES-EEEEE--------------TTT--TTS--SEE-E-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EE
T ss_pred eEEEeCeEEecCCCC-----------CCceEEeecCCCc-ceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceE
Confidence 455555211122110 0000001211111 24667788887776421 1 1111 135677888
Q ss_pred EeEEEeCCCCCCCCceEe--ec----CcccEEEEeeEEEEEEeEEEc--CCceeEEcccCCCCCcCcEEEEEEEeeEEeC
Q 047738 192 KSLIIDSPETSPNTDGIH--IA----RSHDVSVHTSIIAAVTYVNCG--PGHGISIGSLGKNGEEVKVENITVRHVNFCK 263 (391)
Q Consensus 192 ~n~~I~~~~~~~~~DGi~--~~----~s~nv~I~n~~i~~i~n~~~~--~g~gi~igs~~~~~~~~~~~ni~i~N~~~~~ 263 (391)
+++.+.+......+=.+. +. ...+-+|++++|... -... .+..|.||... .+..-.+.+|+++.|.+
T Consensus 136 Dhn~F~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~r--p~~g~NggEtIRiG~S~---~S~~~s~t~Ve~NlFe~ 210 (425)
T PF14592_consen 136 DHNYFQGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPR--PPKGGNGGETIRIGTSH---SSMSDSNTTVENNLFER 210 (425)
T ss_dssp ES-EEE---SSS-SEEE--S--SS-------EEES-EEE-E-----SSS---SEEE-SST---T-B-----EEES-EEEE
T ss_pred EccEeeccccCCcEEEEEecccCccccccCceEEecccccc--CCCCCCCceeEEEeccc---ccccccceeeecchhhh
Confidence 999988743221121222 11 123557788877751 1111 12358887753 24455778888888877
Q ss_pred CCe---EEEEEEeCCCCceEEEEEEEE
Q 047738 264 TTN---GARIKTWQAGKGQVQHVEFSY 287 (391)
Q Consensus 264 ~~~---gi~i~~~~~~~g~v~nV~~~n 287 (391)
++- -|.+|+. ...+++-+|.+
T Consensus 211 cdGE~EIISvKS~---~N~ir~Ntf~e 234 (425)
T PF14592_consen 211 CDGEVEIISVKSS---DNTIRNNTFRE 234 (425)
T ss_dssp E-SSSEEEEEESB---T-EEES-EEES
T ss_pred cCCceeEEEeecC---CceEeccEEEe
Confidence 654 3555543 34555555444
No 27
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.26 E-value=7.3e-06 Score=74.46 Aligned_cols=114 Identities=12% Similarity=0.223 Sum_probs=62.9
Q ss_pred EeeeCcEEEeeeEEEcCCceeEEEeccccEEEEeEEEeCCCCCC-----CCceE------eecCcccEEEEeeEEEE---
Q 047738 160 FIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSP-----NTDGI------HIARSHDVSVHTSIIAA--- 225 (391)
Q Consensus 160 ~~~~~nv~I~~i~i~~~~~~~i~~~~~~~v~i~n~~I~~~~~~~-----~~DGi------~~~~s~nv~I~n~~i~~--- 225 (391)
|+.|++++++|++|-+++.. +..|++++++|+.+.+....- .-|++ .+.+|+||.|+|+.+.+
T Consensus 94 fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKDA 170 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKDA 170 (277)
T ss_pred hhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEecccc
Confidence 55677777777777666532 224555555555553321100 01122 23457777777777776
Q ss_pred ---EEeEEEcCC--ceeEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCCCCceEEEEEEEEEEEccCC
Q 047738 226 ---VTYVNCGPG--HGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQ 294 (391)
Q Consensus 226 ---i~n~~~~~g--~gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~~g~v~nV~~~ni~i~~~~ 294 (391)
-+|++...+ .|=-+|. ..+|+++.||++.+. .|+. +++|++.+||++.++.
T Consensus 171 FWn~eNVtVyDS~i~GEYLgW--------~SkNltliNC~I~g~-QpLC---------Y~~~L~l~nC~~~~td 226 (277)
T PF12541_consen 171 FWNCENVTVYDSVINGEYLGW--------NSKNLTLINCTIEGT-QPLC---------YCDNLVLENCTMIDTD 226 (277)
T ss_pred cccCCceEEEcceEeeeEEEE--------EcCCeEEEEeEEecc-CccE---------eecceEEeCcEeecce
Confidence 445554433 2434444 256777777777665 2222 5667777777777543
No 28
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.25 E-value=1.8e-05 Score=72.00 Aligned_cols=90 Identities=14% Similarity=0.277 Sum_probs=73.5
Q ss_pred EEEeeeCcEEEeeeEEEcCCceeEEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE-----------E
Q 047738 158 VSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA-----------V 226 (391)
Q Consensus 158 i~~~~~~nv~I~~i~i~~~~~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-----------i 226 (391)
-.+++|+|+.++++.+... -.|+.|+||+|+|.++.+-+ .++.|+||+|+|+.|.. .
T Consensus 131 Yf~m~s~ni~id~l~~~Gn----Y~Fq~~kNvei~ns~l~sKD--------AFWn~eNVtVyDS~i~GEYLgW~SkNltl 198 (277)
T PF12541_consen 131 YFFMNSENIYIDNLVLDGN----YSFQYCKNVEIHNSKLDSKD--------AFWNCENVTVYDSVINGEYLGWNSKNLTL 198 (277)
T ss_pred EeeeeccceEEeceEEeCC----EEeeceeeEEEEccEEeccc--------ccccCCceEEEcceEeeeEEEEEcCCeEE
Confidence 4567888888888888654 45789999999999999853 25789999999999998 6
Q ss_pred EeEEEcCCceeEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEE
Q 047738 227 TYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARI 270 (391)
Q Consensus 227 ~n~~~~~g~gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i 270 (391)
.||++.+..|+.. ++|++++||+|.+++.++.-
T Consensus 199 iNC~I~g~QpLCY-----------~~~L~l~nC~~~~tdlaFEy 231 (277)
T PF12541_consen 199 INCTIEGTQPLCY-----------CDNLVLENCTMIDTDLAFEY 231 (277)
T ss_pred EEeEEeccCccEe-----------ecceEEeCcEeecceeeeee
Confidence 6777777777775 89999999999988766654
No 29
>PLN02176 putative pectinesterase
Probab=98.25 E-value=0.00037 Score=67.08 Aligned_cols=48 Identities=19% Similarity=0.134 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEce
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSG 95 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g 95 (391)
|-..||+||+++.......-+|+|++| +|+-. +.++- .|. +++|+.+|
T Consensus 50 df~TIq~AIdavP~~~~~~~~I~Ik~G-vY~Ek-V~Ip~-~k~-~vtl~G~g 97 (340)
T PLN02176 50 YFKTVQSAIDSIPLQNQNWIRILIQNG-IYREK-VTIPK-EKG-YIYMQGKG 97 (340)
T ss_pred CccCHHHHHhhchhcCCceEEEEECCc-EEEEE-EEECC-CCc-cEEEEEcC
Confidence 477899999954332212347899999 99754 33320 034 78887764
No 30
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=0.00021 Score=66.25 Aligned_cols=142 Identities=17% Similarity=0.199 Sum_probs=95.6
Q ss_pred eEEEEceEEecCCCCCCCCCCCcccEEEEeeeceEEeeeeEEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEE
Q 047738 89 ISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHI 168 (391)
Q Consensus 89 ~~l~l~g~l~~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I 168 (391)
+.|.+.|+|.++.. + ...+.++.+.|++|.|.|+ ++. .....+.+...+||.|
T Consensus 77 ~ii~v~Gti~~s~p-s------~~k~~iki~sNkTivG~g~---~a~-----------------~~g~gl~i~~a~NVIi 129 (345)
T COG3866 77 VIIVVKGTITASTP-S------DKKITIKIGSNKTIVGSGA---DAT-----------------LVGGGLKIRDAGNVII 129 (345)
T ss_pred EEEEEcceEeccCC-C------CceEEEeeccccEEEeecc---ccE-----------------EEeceEEEEeCCcEEE
Confidence 46777888877531 1 1247778899999999541 110 0223477888899999
Q ss_pred eeeEEEcCC-----ceeEEE-eccccEEEEeEEEeCCCC---CCCCce-Eeec-CcccEEEEeeEEEEEEeEEEcCCcee
Q 047738 169 NEIYVERSP-----QVHIVV-DYSQDVHFKSLIIDSPET---SPNTDG-IHIA-RSHDVSVHTSIIAAVTYVNCGPGHGI 237 (391)
Q Consensus 169 ~~i~i~~~~-----~~~i~~-~~~~~v~i~n~~I~~~~~---~~~~DG-i~~~-~s~nv~I~n~~i~~i~n~~~~~g~gi 237 (391)
+|++|+..+ ...|.+ ...++++|++|++..... ....|| +++. .+.+|+|.+|+|.. ...++
T Consensus 130 rNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhd-------h~Kss 202 (345)
T COG3866 130 RNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHD-------HDKSS 202 (345)
T ss_pred EeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeec-------CCeee
Confidence 999999776 456777 788999999999988322 123566 4554 57889988888875 22344
Q ss_pred EEcccCCCCCcCcEEEEEEEeeEEeCC
Q 047738 238 SIGSLGKNGEEVKVENITVRHVNFCKT 264 (391)
Q Consensus 238 ~igs~~~~~~~~~~~ni~i~N~~~~~~ 264 (391)
-+|+.......+.-.+|++.+|.+.+.
T Consensus 203 l~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 203 LLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred eeccCCcccccCCceeEEEeccccccc
Confidence 555543211135567888888888874
No 31
>PLN02634 probable pectinesterase
Probab=98.14 E-value=0.00071 Score=65.45 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEce
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSG 95 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g 95 (391)
|-..||+||+++....+..-+|+|-|| +|+-. +.++- .|. +++|+.+|
T Consensus 67 df~TIQaAIda~P~~~~~r~vI~Ik~G-vY~Ek-V~Ip~-~k~-~ItL~G~g 114 (359)
T PLN02634 67 DFRSVQDAVDSVPKNNTMSVTIKINAG-FYREK-VVVPA-TKP-YITFQGAG 114 (359)
T ss_pred CccCHHHHHhhCcccCCccEEEEEeCc-eEEEE-EEEcC-CCC-eEEEEecC
Confidence 577899999954332223457999999 99754 33320 034 77777664
No 32
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.07 E-value=0.00054 Score=67.54 Aligned_cols=160 Identities=13% Similarity=0.043 Sum_probs=88.1
Q ss_pred cccEEEEeeeceEEeeeeEEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCceeEEEeccccEE
Q 047738 111 GRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVH 190 (391)
Q Consensus 111 ~~~i~~~~~~nv~I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~~i~~~~~~~v~ 190 (391)
...|.+.++++++|++ =.|.+++ ...|.+..|+ ..|++-+|.......+++..++++.
T Consensus 135 dAgI~v~~a~~v~Ied-n~L~gsg--------------------~FGI~L~~~~-~~I~~N~I~g~~~~~I~lw~S~g~~ 192 (455)
T TIGR03808 135 RGLIHCQGGRDVRITD-CEITGSG--------------------GNGIWLETVS-GDISGNTITQIAVTAIVSFDALGLI 192 (455)
T ss_pred CCEEEEccCCceEEEe-eEEEcCC--------------------cceEEEEcCc-ceEecceEeccccceEEEeccCCCE
Confidence 4577778899999988 3455542 0224444444 4444444433333334444444444
Q ss_pred EEeEEEeCCCC--------------------------------CCCCceEeecCcccEEEEeeEEEEEE--eEEEcCCce
Q 047738 191 FKSLIIDSPET--------------------------------SPNTDGIHIARSHDVSVHTSIIAAVT--YVNCGPGHG 236 (391)
Q Consensus 191 i~n~~I~~~~~--------------------------------~~~~DGi~~~~s~nv~I~n~~i~~i~--n~~~~~g~g 236 (391)
|++.+|....+ ....+||+++.+.+++|+++.|+..+ .+....+..
T Consensus 193 V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss~ 272 (455)
T TIGR03808 193 VARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSASN 272 (455)
T ss_pred EECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEcccC
Confidence 44444443222 34678999999999999999988722 222221111
Q ss_pred eEEccc-CCC--C---CcCcEEE-EEEEeeEEeCCCeEEEEEEeCCC--CceEEEEEEEEEEEcc
Q 047738 237 ISIGSL-GKN--G---EEVKVEN-ITVRHVNFCKTTNGARIKTWQAG--KGQVQHVEFSYMNFTE 292 (391)
Q Consensus 237 i~igs~-~~~--~---~~~~~~n-i~i~N~~~~~~~~gi~i~~~~~~--~g~v~nV~~~ni~i~~ 292 (391)
+.|-.. -+. + -.++..+ -.|.|+++.+...|+.+..+..+ -..++.-.++|++-+.
T Consensus 273 ~~i~~N~~~~~R~~alhymfs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~~~gn~irn~~~~~ 337 (455)
T TIGR03808 273 IQITGNSVSDVREVALYSEFAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAVVQGNIIRNLIPKR 337 (455)
T ss_pred cEEECcEeeeeeeeEEEEEEeCCCcEEeccEEecCcceEEEEeecCCceEEEEecceeeccccCC
Confidence 111000 000 0 0112333 56777778788788888876543 3567777777777654
No 33
>PLN02480 Probable pectinesterase
Probab=98.06 E-value=0.00029 Score=67.97 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEc
Q 047738 43 DDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLS 94 (391)
Q Consensus 43 ddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~ 94 (391)
.|-..||+||++|.+.....-+|+|.+| +|+ ..+.++-. |. +++|+.+
T Consensus 58 g~f~TIQ~AIdaap~~~~~~~~I~Ik~G-vY~-E~V~I~~~-kp-~ItL~G~ 105 (343)
T PLN02480 58 GDFTSVQSAIDAVPVGNSEWIIVHLRKG-VYR-EKVHIPEN-KP-FIFMRGN 105 (343)
T ss_pred CCcccHHHHHhhCccCCCceEEEEEcCc-EEE-EEEEECCC-Cc-eEEEEec
Confidence 4678899999954432111125889999 997 44555300 22 4555544
No 34
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.05 E-value=0.00019 Score=66.09 Aligned_cols=114 Identities=14% Similarity=0.146 Sum_probs=89.5
Q ss_pred eEEEeeeCcEEEeeeEEEcCCceeEEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEEEEeEEEcCCce
Q 047738 157 AVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHG 236 (391)
Q Consensus 157 ~i~~~~~~nv~I~~i~i~~~~~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~i~n~~~~~g~g 236 (391)
.+.+..+.+++|++.++.+. ..++++..+++++|+++.+... ..||.+..+.+.+|+++.|.. ...|
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n-----~~Gi~l~~s~~~~I~~N~i~~-------n~~G 103 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNN-----GYGIYLMGSSNNTISNNTISN-------NGYG 103 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEcc-----CCCEEEEcCCCcEEECCEecC-------CCce
Confidence 46888999999999999988 7899999999999999999984 378999888877988888775 2337
Q ss_pred eEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCCCCceEEEEEEEEEEEccC-CceEEE
Q 047738 237 ISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEV-QNPIII 299 (391)
Q Consensus 237 i~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~~g~v~nV~~~ni~i~~~-~~~i~i 299 (391)
|.+.. ..+.+|+++++.+...||.+... .+.++++.++.+. ..+|.+
T Consensus 104 I~l~~---------s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~~n~~~Gi~~ 151 (236)
T PF05048_consen 104 IYLYG---------SSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTISNNTDYGIYF 151 (236)
T ss_pred EEEee---------CCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEeCCCccceEE
Confidence 76633 45688889999888889988742 4566666677666 677773
No 35
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.99 E-value=0.00011 Score=62.54 Aligned_cols=119 Identities=16% Similarity=0.235 Sum_probs=80.1
Q ss_pred eeEEEeeeCcEEEeeeEEEcCCceeEEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEEEEeEEEcCCc
Q 047738 156 TAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGH 235 (391)
Q Consensus 156 ~~i~~~~~~nv~I~~i~i~~~~~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~i~n~~~~~g~ 235 (391)
..|.+..+..++|++.+|.+ ...++.+....+++++++.+.... .|+.+..+..++|++|.|.. ....
T Consensus 24 ~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~-----~~i~~~~~~~~~i~~~~i~~------~~~~ 91 (158)
T PF13229_consen 24 DGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNG-----SGIYVSGSSNITIENNRIEN------NGDY 91 (158)
T ss_dssp ECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-S-----EEEECCS-CS-EEES-EEEC------SSS-
T ss_pred eEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEcc-----ceEEEEecCCceecCcEEEc------CCCc
Confidence 46888888889999999999 667899988899999999998843 68888888999999988886 2334
Q ss_pred eeEEcccCCCCCcCcEEEEEEEeeEEeCCC-eEEEEEEeCCCCceEEEEEEEEEEEccCC-ceEEE
Q 047738 236 GISIGSLGKNGEEVKVENITVRHVNFCKTT-NGARIKTWQAGKGQVQHVEFSYMNFTEVQ-NPIII 299 (391)
Q Consensus 236 gi~igs~~~~~~~~~~~ni~i~N~~~~~~~-~gi~i~~~~~~~g~v~nV~~~ni~i~~~~-~~i~i 299 (391)
||.+.. ..++++|++|++.+.. .|+.+.... -.+++++++++.+.. .+|.+
T Consensus 92 gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~~~~~~gi~~ 144 (158)
T PF13229_consen 92 GIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTISNNGGNGIYL 144 (158)
T ss_dssp SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEECESSEEEE-
T ss_pred cEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEEeCcceeEEE
Confidence 777732 2567999999999976 688887532 246777777777654 56654
No 36
>PLN02682 pectinesterase family protein
Probab=97.97 E-value=0.00097 Score=64.81 Aligned_cols=49 Identities=16% Similarity=0.183 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEce
Q 047738 43 DDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSG 95 (391)
Q Consensus 43 ddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g 95 (391)
-|-..||+||+++.......-+|+|.+| +|+-. +.++- .|+ +++|+.+|
T Consensus 80 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~G-~Y~Ek-V~Ip~-~k~-~Itl~G~g 128 (369)
T PLN02682 80 GDFTTIQAAIDSLPVINLVRVVIKVNAG-TYREK-VNIPP-LKA-YITLEGAG 128 (369)
T ss_pred CCccCHHHHHhhccccCCceEEEEEeCc-eeeEE-EEEec-cCc-eEEEEecC
Confidence 3566799999954332212457999999 99743 33320 034 77777664
No 37
>PLN02497 probable pectinesterase
Probab=97.95 E-value=0.0016 Score=62.59 Aligned_cols=48 Identities=13% Similarity=0.065 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEce
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSG 95 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g 95 (391)
|-..||+||+++......--+|+|-+| +|+-. +.++- .|. +++|+.+|
T Consensus 43 df~TIq~AIdavP~~~~~~~~I~Ik~G-~Y~Ek-V~Ip~-~k~-~itl~G~g 90 (331)
T PLN02497 43 NFTTIQSAIDSVPSNNKHWFCINVKAG-LYREK-VKIPY-DKP-FIVLVGAG 90 (331)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCc-EEEEE-EEecC-CCC-cEEEEecC
Confidence 466799999854332212236999999 99654 33320 034 77776654
No 38
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.89 E-value=0.00048 Score=63.45 Aligned_cols=117 Identities=17% Similarity=0.196 Sum_probs=94.0
Q ss_pred eeEEEeeeCcEEEeeeEEEcCCceeEEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEEEEeEEEcCCc
Q 047738 156 TAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGH 235 (391)
Q Consensus 156 ~~i~~~~~~nv~I~~i~i~~~~~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~i~n~~~~~g~ 235 (391)
..+.+..+++..|++.++.+.. .++.+..+.+++|++++|... ..||++..+++++|+++.+.. ...
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~-------n~~ 80 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISN-------NGY 80 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEc-------cCC
Confidence 4588889999999999998764 577899999999999999884 579999999999998888875 337
Q ss_pred eeEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCCCCceEEEEEEEEEEEccCCceEEEEe
Q 047738 236 GISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQ 301 (391)
Q Consensus 236 gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~~g~v~nV~~~ni~i~~~~~~i~i~~ 301 (391)
||.+.. ..+.+|+++++.+...||.+... .+.++++.++.+...+|.+..
T Consensus 81 Gi~l~~---------s~~~~I~~N~i~~n~~GI~l~~s-------~~~~I~~N~i~~~~~GI~l~~ 130 (236)
T PF05048_consen 81 GIYLMG---------SSNNTISNNTISNNGYGIYLYGS-------SNNTISNNTISNNGYGIYLSS 130 (236)
T ss_pred CEEEEc---------CCCcEEECCEecCCCceEEEeeC-------CceEEECcEEeCCCEEEEEEe
Confidence 888744 23559999999999889988742 346677777777788888864
No 39
>PLN02665 pectinesterase family protein
Probab=97.85 E-value=0.0025 Score=62.00 Aligned_cols=48 Identities=21% Similarity=0.146 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEce
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSG 95 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g 95 (391)
|-..||+||+++.+.....-+|+|.+| +|+-. +.++- .|. +++|+.++
T Consensus 79 df~TIq~AIdaiP~~~~~r~vI~Ik~G-vY~Ek-V~Ip~-~kp-~Itl~G~~ 126 (366)
T PLN02665 79 DFKTITDAIKSIPAGNTQRVIIDIGPG-EYNEK-ITIDR-SKP-FVTLYGSP 126 (366)
T ss_pred CccCHHHHHhhCcccCCceEEEEEeCc-EEEEE-EEecC-CCC-EEEEEecC
Confidence 477899999954332212347889999 99743 34420 033 66776653
No 40
>PLN02773 pectinesterase
Probab=97.80 E-value=0.0018 Score=61.95 Aligned_cols=60 Identities=8% Similarity=0.053 Sum_probs=39.3
Q ss_pred EeeeCcEEEeeeEEEcCCce----eEE-EeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 160 FIQCNNVHINEIYVERSPQV----HIV-VDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 160 ~~~~~nv~I~~i~i~~~~~~----~i~-~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
+..++++..+|++|+|...- .+- ....+.+.+.+|++....|. +-... .+..++||.|..
T Consensus 98 ~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDT-----L~~~~-gr~yf~~c~IeG 162 (317)
T PLN02773 98 IVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDT-----LYLHY-GKQYLRDCYIEG 162 (317)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccce-----eEeCC-CCEEEEeeEEee
Confidence 33578999999999987421 222 23568899999999985432 22222 356677777765
No 41
>PLN02671 pectinesterase
Probab=97.67 E-value=0.0063 Score=59.03 Aligned_cols=48 Identities=23% Similarity=0.169 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEce
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSG 95 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g 95 (391)
|-..||+||+++.+..+..-+|+|.|| +|+-. +.++- .|. +++|+.++
T Consensus 70 df~TIQ~AIdavP~~~~~~~~I~Ik~G-vY~Ek-V~I~~-~k~-~Itl~G~g 117 (359)
T PLN02671 70 DSLTVQGAVDMVPDYNSQRVKIYILPG-IYREK-VLVPK-SKP-YISFIGNE 117 (359)
T ss_pred CccCHHHHHHhchhcCCccEEEEEeCc-eEEEE-EEECC-CCC-eEEEEecC
Confidence 477899999954433223458999999 99743 33420 034 66666554
No 42
>PLN02432 putative pectinesterase
Probab=97.66 E-value=0.0099 Score=56.26 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEc
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLS 94 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~ 94 (391)
|-..||+||+++....+..-+|+|.+| +|+-. +.++- .|. +++|+.+
T Consensus 22 ~f~TIq~Aida~p~~~~~~~~I~I~~G-~Y~E~-V~ip~-~k~-~itl~G~ 68 (293)
T PLN02432 22 DFRKIQDAIDAVPSNNSQLVFIWVKPG-IYREK-VVVPA-DKP-FITLSGT 68 (293)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCc-eeEEE-EEEec-cCc-eEEEEEc
Confidence 477899999954433222357999999 99543 33420 023 6666554
No 43
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.65 E-value=0.00091 Score=62.15 Aligned_cols=129 Identities=14% Similarity=0.179 Sum_probs=93.9
Q ss_pred eEEEeeeCcEEEeeeEEE-cCCceeEEEeccccEEEEeEEEeCCCCC-CCCceEee-cCcccEEEEeeEEEE-EEeEEEc
Q 047738 157 AVSFIQCNNVHINEIYVE-RSPQVHIVVDYSQDVHFKSLIIDSPETS-PNTDGIHI-ARSHDVSVHTSIIAA-VTYVNCG 232 (391)
Q Consensus 157 ~i~~~~~~nv~I~~i~i~-~~~~~~i~~~~~~~v~i~n~~I~~~~~~-~~~DGi~~-~~s~nv~I~n~~i~~-i~n~~~~ 232 (391)
.+.+..|.|++|.++--. .--.|++.+.+.+||.|+|++|...... ++-|+|.+ ..++|++|++|.|.. -.+..-.
T Consensus 94 k~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~ 173 (345)
T COG3866 94 KITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGS 173 (345)
T ss_pred eEEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccccccc
Confidence 378888889988876532 2235788888899999999999986422 33589999 588999999999886 1221112
Q ss_pred CCce-eEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCCC--CceEEEEEEEEEEEccC
Q 047738 233 PGHG-ISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAG--KGQVQHVEFSYMNFTEV 293 (391)
Q Consensus 233 ~g~g-i~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~--~g~v~nV~~~ni~i~~~ 293 (391)
.++| +.|+ .....|+|.++.+.+.+.+.-+...+.. ...-.+|||.++.+++.
T Consensus 174 h~DGl~Dik--------~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 174 HGDGLVDIK--------KDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred CCCccEEec--------cCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 2345 5563 3578999999999999999888765432 14556788888888875
No 44
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.60 E-value=0.0099 Score=58.72 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=42.0
Q ss_pred EEEeeeCcEEEeeeEEEcCCce--------eEE-EeccccEEEEeEEEeCCCCCCCC------ceEeecCcccEEEEeeE
Q 047738 158 VSFIQCNNVHINEIYVERSPQV--------HIV-VDYSQDVHFKSLIIDSPETSPNT------DGIHIARSHDVSVHTSI 222 (391)
Q Consensus 158 i~~~~~~nv~I~~i~i~~~~~~--------~i~-~~~~~~v~i~n~~I~~~~~~~~~------DGi~~~~s~nv~I~n~~ 222 (391)
-.....+++..+|++|+|.... .+- ....+.+.+.+|+|....|.... .+.......+..+++|+
T Consensus 200 Tv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~Cy 279 (422)
T PRK10531 200 VFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSY 279 (422)
T ss_pred EEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCE
Confidence 3344678999999999988532 222 23678899999999986542111 01101112356777777
Q ss_pred EEE
Q 047738 223 IAA 225 (391)
Q Consensus 223 i~~ 225 (391)
|..
T Consensus 280 IeG 282 (422)
T PRK10531 280 IEG 282 (422)
T ss_pred Eee
Confidence 775
No 45
>smart00656 Amb_all Amb_all domain.
Probab=97.56 E-value=0.0084 Score=53.38 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=21.4
Q ss_pred EEEeeeCcEEEeeeEEEcCCc------eeEEEeccccEEEEeEEEeC
Q 047738 158 VSFIQCNNVHINEIYVERSPQ------VHIVVDYSQDVHFKSLIIDS 198 (391)
Q Consensus 158 i~~~~~~nv~I~~i~i~~~~~------~~i~~~~~~~v~i~n~~I~~ 198 (391)
|.+..++||.|++++|++... .++.+..+++|+|++|++..
T Consensus 34 l~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~ 80 (190)
T smart00656 34 LTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSG 80 (190)
T ss_pred EEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEc
Confidence 555556677777777765422 23444444444444444443
No 46
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.03 Score=53.05 Aligned_cols=128 Identities=13% Similarity=0.120 Sum_probs=82.1
Q ss_pred cccEEEEeeeceEEeeeeEEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCceeEEEeccccEE
Q 047738 111 GRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVH 190 (391)
Q Consensus 111 ~~~i~~~~~~nv~I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~~i~~~~~~~v~ 190 (391)
+..+... +.+++++| -++.+.|..-.++ ....+.-.....-.|++..+... .+++.+..+.++.
T Consensus 69 G~~vtv~-aP~~~v~G-l~vr~sg~~lp~m-------------~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~ 132 (408)
T COG3420 69 GSYVTVA-APDVIVEG-LTVRGSGRSLPAM-------------DAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVR 132 (408)
T ss_pred ccEEEEe-CCCceeee-EEEecCCCCcccc-------------cceEEeccCcccceEEccccccc-ceEEEEeccCceE
Confidence 4555554 56778877 3444554432221 22344445556667777777665 4689999999999
Q ss_pred EEeEEEeCCCC---CCCCceEeecCcccEEEEeeEEEEEEeEEEcCCceeEEcccCCCCCcCcEEEEEEEeeEEeCCCeE
Q 047738 191 FKSLIIDSPET---SPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNG 267 (391)
Q Consensus 191 i~n~~I~~~~~---~~~~DGi~~~~s~nv~I~n~~i~~i~n~~~~~g~gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~g 267 (391)
|++.+|....+ ....+||+++.+.++.|..+.|+- .-+||-. ...++..|+++.+....+|
T Consensus 133 i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy-------~rDgIy~---------~~S~~~~~~gnr~~~~Ryg 196 (408)
T COG3420 133 IEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISY-------GRDGIYS---------DTSQHNVFKGNRFRDLRYG 196 (408)
T ss_pred EEeeEEeeccccchhhccCceEEEcCCCcEEEcCcccc-------ccceEEE---------cccccceecccchhheeee
Confidence 99999988543 235689999998999987766654 2334443 2345666667777666666
Q ss_pred EEE
Q 047738 268 ARI 270 (391)
Q Consensus 268 i~i 270 (391)
...
T Consensus 197 vHy 199 (408)
T COG3420 197 VHY 199 (408)
T ss_pred EEE
Confidence 543
No 47
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.48 E-value=0.011 Score=60.04 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhhc-CCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEce
Q 047738 44 DSLAYAKAWNDACKA-NAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSG 95 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~-~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g 95 (391)
|-..||+||+++.+. ....-+|+|.+| +|+-. +.++- .|. +++|+.+|
T Consensus 236 ~f~TIq~AI~a~~~~~~~~r~vI~Ik~G-vY~E~-V~I~~-~k~-nItl~G~g 284 (529)
T PLN02170 236 THKTIGEALLSTSLESGGGRTVIYLKAG-TYHEN-LNIPT-KQK-NVMLVGDG 284 (529)
T ss_pred chhhHHHHHHhcccccCCceEEEEEeCC-eeEEE-EecCC-CCc-eEEEEEcC
Confidence 467899999854332 113468999999 99743 33321 134 77776664
No 48
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.44 E-value=0.0026 Score=60.59 Aligned_cols=131 Identities=16% Similarity=0.164 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCCCCCCCCcccEEEEeeece
Q 047738 43 DDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGL 122 (391)
Q Consensus 43 ddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~~~~~~~~~~i~~~~~~nv 122 (391)
-|-..||+||+++.......-+|+|.|| +|+-. +.++-. |. +++|+.++. +..
T Consensus 10 gdf~TIq~Aida~p~~~~~~~~I~I~~G-~Y~E~-V~i~~~-k~-~v~l~G~~~-----------------------~~t 62 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPDNNTSRYTIFIKPG-TYREK-VTIPRS-KP-NVTLIGEGR-----------------------DKT 62 (298)
T ss_dssp SSBSSHHHHHHHS-SSSSS-EEEEE-SE-EEE---EEE-ST-ST-TEEEEES-T-----------------------TTE
T ss_pred CCccCHHHHHHhchhcCCceEEEEEeCe-eEccc-cEeccc-cc-eEEEEecCC-----------------------Cce
Confidence 3566799999964443212358999999 99743 444310 23 666655531 112
Q ss_pred EEeeee-EEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCce------eEEEeccccEEEEeEE
Q 047738 123 NINGRG-LFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQV------HIVVDYSQDVHFKSLI 195 (391)
Q Consensus 123 ~I~G~G-~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~------~i~~~~~~~v~i~n~~ 195 (391)
.|++.. ..++. .-+ +...+.+ ..+++.++||+|+|.... .+. ...+.+.+.+|+
T Consensus 63 iI~~~~~~~~~~--~t~---------------~saT~~v-~a~~f~~~nit~~Nt~g~~~~qAvAl~-~~~d~~~f~~c~ 123 (298)
T PF01095_consen 63 IITGNDNAADGG--GTF---------------RSATFSV-NADDFTAENITFENTAGPSGGQAVALR-VSGDRAAFYNCR 123 (298)
T ss_dssp EEEE---TTTB---HCG---------------GC-SEEE--STT-EEEEEEEEEHCSGSG----SEE-ET-TSEEEEEEE
T ss_pred EEEEeccccccc--ccc---------------ccccccc-cccceeeeeeEEecCCCCcccceeeee-ecCCcEEEEEeE
Confidence 222210 00000 000 2223333 458899999999886421 233 356788999999
Q ss_pred EeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 196 IDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 196 I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
+.+..+ -+-..+ .+..++||.|..
T Consensus 124 ~~g~QD-----TL~~~~-~r~y~~~c~IeG 147 (298)
T PF01095_consen 124 FLGYQD-----TLYANG-GRQYFKNCYIEG 147 (298)
T ss_dssp EE-STT------EEE-S-SEEEEES-EEEE
T ss_pred Eccccc-----eeeecc-ceeEEEeeEEEe
Confidence 988543 333332 456777787776
No 49
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.39 E-value=0.01 Score=60.49 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCCCCCCCCcccEEEEeeeceE
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLN 123 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~~~~~~~~~~i~~~~~~nv~ 123 (391)
|-..||+||+++....+..-+|+|.+| +|+-. +.++-. |. +++|+.+|. +...
T Consensus 217 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~-~i~l~G~g~-----------------------~~Ti 269 (520)
T PLN02201 217 NFTTIMDAVLAAPDYSTKRYVIYIKKG-VYLEN-VEIKKK-KW-NIMMVGDGI-----------------------DATV 269 (520)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCc-eeEEE-EEecCC-Cc-eEEEEecCC-----------------------CCcE
Confidence 577899999854332223568999999 99743 334200 23 566655542 1122
Q ss_pred Eeeee-EEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCc----eeEEE-eccccEEEEeEEEe
Q 047738 124 INGRG-LFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQ----VHIVV-DYSQDVHFKSLIID 197 (391)
Q Consensus 124 I~G~G-~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~----~~i~~-~~~~~v~i~n~~I~ 197 (391)
|++.. ..|| |.. ++...+.+ ..+++..+|++|+|... -.+-+ ...+...+.+|+|.
T Consensus 270 It~~~~~~~g-----~~T------------~~SAT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~ 331 (520)
T PLN02201 270 ITGNRSFIDG-----WTT------------FRSATFAV-SGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMR 331 (520)
T ss_pred EEeCCccCCC-----Ccc------------cceEEEEE-ECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeee
Confidence 22210 0111 110 02233443 45789999999998753 22322 35678899999998
Q ss_pred CCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 198 SPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 198 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
...| -+-... .+-..++|+|..
T Consensus 332 G~QD-----TLy~~~-~Rqyy~~C~I~G 353 (520)
T PLN02201 332 GYQD-----TLYTHT-MRQFYRECRITG 353 (520)
T ss_pred ccCC-----eeEeCC-CCEEEEeeEEee
Confidence 8543 222222 345566777665
No 50
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.37 E-value=0.013 Score=59.84 Aligned_cols=131 Identities=14% Similarity=0.136 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCCCCCCCCcccEEEEeeeceE
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLN 123 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~~~~~~~~~~i~~~~~~nv~ 123 (391)
+-..||+||+++....+..-+|+|.+| +|+- .+.++-. |. +++|+.+|. +...
T Consensus 229 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~~-k~-~itl~G~g~-----------------------~~Ti 281 (530)
T PLN02933 229 NFTTINEAVSAAPNSSETRFIIYIKGG-EYFE-NVELPKK-KT-MIMFIGDGI-----------------------GKTV 281 (530)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEcCc-eEEE-EEEecCC-Cc-eEEEEEcCC-----------------------CCcE
Confidence 466799999854333223458999999 9974 3444310 23 666665542 1122
Q ss_pred Eeeee-EEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCc----eeEEE-eccccEEEEeEEEe
Q 047738 124 INGRG-LFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQ----VHIVV-DYSQDVHFKSLIID 197 (391)
Q Consensus 124 I~G~G-~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~----~~i~~-~~~~~v~i~n~~I~ 197 (391)
|++.. ..|| |.. ++...+.+ ..+++..+|++|+|... -.+-+ ..++.+.+.+|+|.
T Consensus 282 It~~~~~~dg-----~~T------------~~SaT~~v-~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~ 343 (530)
T PLN02933 282 IKANRSRIDG-----WST------------FQTATVGV-KGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFD 343 (530)
T ss_pred EEeCCccCCC-----Ccc------------ccceEEEE-ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEE
Confidence 22210 0111 110 02233433 45789999999998743 12332 35778899999998
Q ss_pred CCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 198 SPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 198 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
...|. +-.. ..+-..++|+|..
T Consensus 344 G~QDT-----Ly~~-~~Rqyy~~C~IeG 365 (530)
T PLN02933 344 GYQDT-----LYVH-SAKQFYRECDIYG 365 (530)
T ss_pred ecccc-----cccC-CCceEEEeeEEec
Confidence 85432 2111 2345667777665
No 51
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.35 E-value=0.01 Score=61.20 Aligned_cols=182 Identities=9% Similarity=0.045 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHhhc-CCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCCCCCCCCcccEEEEeeece
Q 047738 44 DSLAYAKAWNDACKA-NAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGL 122 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~-~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~~~~~~~~~~i~~~~~~nv 122 (391)
+-..||+||+++.+. ..+--+|+|.+| +|+-. +.++- .|. +++|+.+|. +..
T Consensus 252 ~f~TIq~Av~a~p~~~~~~r~vI~vk~G-vY~E~-V~i~~-~k~-~v~l~G~g~-----------------------~~T 304 (553)
T PLN02708 252 CYKTVQEAVNAAPDNNGDRKFVIRIKEG-VYEET-VRVPL-EKK-NVVFLGDGM-----------------------GKT 304 (553)
T ss_pred CccCHHHHHHhhhhccCCccEEEEEeCc-eEEee-eeecC-CCc-cEEEEecCC-----------------------Cce
Confidence 466799999864441 113459999999 99743 33320 023 666666542 122
Q ss_pred EEeeeeEEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCc----eeEEE-eccccEEEEeEEEe
Q 047738 123 NINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQ----VHIVV-DYSQDVHFKSLIID 197 (391)
Q Consensus 123 ~I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~----~~i~~-~~~~~v~i~n~~I~ 197 (391)
.|+|.-.....| |.. ++...+.+ ..+++..+|++|+|... -.+-+ ..++.+.+.+|+|.
T Consensus 305 iIt~~~~~~~~g---~~T------------~~saT~~v-~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~ 368 (553)
T PLN02708 305 VITGSLNVGQPG---IST------------YNTATVGV-LGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFL 368 (553)
T ss_pred EEEecCccCCCC---cCc------------cceEEEEE-EcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeee
Confidence 222210000000 000 12233444 45799999999998753 22333 35778899999998
Q ss_pred CCCCCCCCceEeecCcccEEEEeeEEEEEEeEEEcCCceeEEcccCCCCCcCcEEEEEEEeeEEeCCC--------eEEE
Q 047738 198 SPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTT--------NGAR 269 (391)
Q Consensus 198 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~i~n~~~~~g~gi~igs~~~~~~~~~~~ni~i~N~~~~~~~--------~gi~ 269 (391)
+..|. +-..+ .+-..++|.|.. .-.+-+|. -.++|+||++.-.. ..-.
T Consensus 369 G~QDT-----Ly~~~-~rq~y~~C~I~G--------tVDFIFG~----------a~avfq~c~i~~~~~~~~~~~~~~~~ 424 (553)
T PLN02708 369 GNQDT-----LYAHS-LRQFYKSCRIQG--------NVDFIFGN----------SAAVFQDCAILIAPRQLKPEKGENNA 424 (553)
T ss_pred ecccc-----ceeCC-CceEEEeeEEee--------cCCEEecC----------ceEEEEccEEEEeccccCCCCCCceE
Confidence 85432 22222 344556666654 33444433 25667777775321 1123
Q ss_pred EEEeCCC--CceEEEEEEEEEEEccC
Q 047738 270 IKTWQAG--KGQVQHVEFSYMNFTEV 293 (391)
Q Consensus 270 i~~~~~~--~g~v~nV~~~ni~i~~~ 293 (391)
|.. .++ ...-..+.|.||++...
T Consensus 425 iTA-~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 425 VTA-HGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred EEe-CCCCCCCCCceEEEEccEEecC
Confidence 322 221 23344677888888653
No 52
>smart00656 Amb_all Amb_all domain.
Probab=97.33 E-value=0.012 Score=52.46 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=73.2
Q ss_pred eEEEeccccEEEEeEEEeCCCCC--CCCceEeecCcccEEEEeeEEEEEEeEEEc--CCce-eEEcccCCCCCcCcEEEE
Q 047738 180 HIVVDYSQDVHFKSLIIDSPETS--PNTDGIHIARSHDVSVHTSIIAAVTYVNCG--PGHG-ISIGSLGKNGEEVKVENI 254 (391)
Q Consensus 180 ~i~~~~~~~v~i~n~~I~~~~~~--~~~DGi~~~~s~nv~I~n~~i~~i~n~~~~--~g~g-i~igs~~~~~~~~~~~ni 254 (391)
++.+..++||.|+|++|...... .+.|+|.+.++++|+|++|.|......... ..++ +.+. ....++
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~--------~~s~~v 104 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIK--------NGSTYV 104 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEEC--------cccccE
Confidence 45555678999999999986431 367999999999999999999873111111 1233 3442 356899
Q ss_pred EEEeeEEeCCCeEEEEEEeCCC-CceEEEEEEEEEEEccC
Q 047738 255 TVRHVNFCKTTNGARIKTWQAG-KGQVQHVEFSYMNFTEV 293 (391)
Q Consensus 255 ~i~N~~~~~~~~gi~i~~~~~~-~g~v~nV~~~ni~i~~~ 293 (391)
++.+|.+.+..++.-+...... .....+|++.+..+.+.
T Consensus 105 Tvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred EEECceEecCCEEEEEccCCCccccccceEEEECcEEcCc
Confidence 9999999998888888764321 12245788887777653
No 53
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.32 E-value=0.017 Score=59.44 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCCCCCCCCcccEEEEeeeceE
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLN 123 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~~~~~~~~~~i~~~~~~nv~ 123 (391)
|-..||+||+++.......-+|+|.+| +|.-. +.++- .|. +++|+.+|. +...
T Consensus 241 ~f~TIq~Ai~a~p~~~~~r~vI~Ik~G-vY~E~-V~i~~-~k~-~i~l~G~g~-----------------------~~Ti 293 (541)
T PLN02416 241 NFSTITDAINFAPNNSNDRIIIYVREG-VYEEN-VEIPI-YKT-NIVLIGDGS-----------------------DVTF 293 (541)
T ss_pred CccCHHHHHHhhhhcCCceEEEEEeCc-eeEEE-EecCC-CCc-cEEEEecCC-----------------------CceE
Confidence 466799999854332212347899999 99743 33320 023 677766642 1111
Q ss_pred Eeeee-EEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCce----eEE-EeccccEEEEeEEEe
Q 047738 124 INGRG-LFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQV----HIV-VDYSQDVHFKSLIID 197 (391)
Q Consensus 124 I~G~G-~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~----~i~-~~~~~~v~i~n~~I~ 197 (391)
|+|.. ..|| |.. ++...+.+. .+++..+|++|+|.... .+- -..++.+.+.+|+|.
T Consensus 294 It~~~~~~~g-----~~T------------~~saT~~v~-~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~ 355 (541)
T PLN02416 294 ITGNRSVVDG-----WTT------------FRSATLAVS-GEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTIN 355 (541)
T ss_pred EeCCCccCCC-----CCc------------cceEEEEEE-CCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEe
Confidence 22210 0011 110 022334443 57888888888876432 122 235677888888887
Q ss_pred CCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 198 SPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 198 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
+..|. +.. .+.+-..++|.|..
T Consensus 356 G~QDT-----Ly~-~~~Rqyy~~C~I~G 377 (541)
T PLN02416 356 GYQDT-----LYV-HSFRQFYRECDIYG 377 (541)
T ss_pred cccch-----hcc-CCCceEEEeeEEee
Confidence 75432 111 12345666666665
No 54
>PLN02304 probable pectinesterase
Probab=97.29 E-value=0.022 Score=55.64 Aligned_cols=132 Identities=14% Similarity=0.111 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCCCCCCCCcccEEEEeeeceE
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLN 123 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~~~~~~~~~~i~~~~~~nv~ 123 (391)
|-..||+||+++.+.....-+|+|.+| +|+-. +.++- .|. +++|+.+|.= ...|......
T Consensus 86 df~TIQ~AIdavP~~~~~r~vI~Ik~G-vY~Ek-V~Ip~-~K~-~Itl~G~g~~-------------~TiIt~~~~a--- 145 (379)
T PLN02304 86 NFTTVQSAVDAVGNFSQKRNVIWINSG-IYYEK-VTVPK-TKP-NITFQGQGFD-------------STAIAWNDTA--- 145 (379)
T ss_pred CccCHHHHHhhCcccCCCcEEEEEeCe-EeEEE-EEECC-CCC-cEEEEecCCC-------------CcEEEccCcc---
Confidence 466799999964332213457999999 99743 33421 034 7777666420 0111111000
Q ss_pred EeeeeEEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCc---------eeEE-EeccccEEEEe
Q 047738 124 INGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQ---------VHIV-VDYSQDVHFKS 193 (391)
Q Consensus 124 I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~---------~~i~-~~~~~~v~i~n 193 (391)
-.+.|+ +....+.+. .+++..+||+|+|... -.+- ....+.+.+.+
T Consensus 146 ~~~~gT-----------------------~~SaTv~v~-a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~ 201 (379)
T PLN02304 146 KSANGT-----------------------FYSASVQVF-ASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWG 201 (379)
T ss_pred cCCCCc-----------------------cceEEEEEE-CCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEe
Confidence 000010 012233333 5889999999998742 1222 23578889999
Q ss_pred EEEeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 194 LIIDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 194 ~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
|+|....|. +... ..+-..+||+|..
T Consensus 202 C~f~G~QDT-----Ly~~-~gR~Yf~~CyIeG 227 (379)
T PLN02304 202 CGFFGAQDT-----LHDD-RGRHYFKDCYIQG 227 (379)
T ss_pred ceEecccce-----eEeC-CCCEEEEeeEEcc
Confidence 999885442 2212 2345566666664
No 55
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.29 E-value=0.019 Score=59.38 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEce
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSG 95 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g 95 (391)
+-..||+||+++.+.....-+|+|.+| +|+- .+.++- .|. +++|+.+|
T Consensus 269 ~f~tI~~Av~a~p~~~~~~~vI~ik~G-vY~E-~V~i~~-~k~-~i~~~G~g 316 (565)
T PLN02468 269 KYKTISEALKDVPEKSEKRTIIYVKKG-VYFE-NVRVEK-KKW-NVVMVGDG 316 (565)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCC-ceEE-EEEecC-CCC-eEEEEecC
Confidence 456799999854433223569999999 9974 333320 023 66776664
No 56
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.28 E-value=0.026 Score=58.02 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEce
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSG 95 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g 95 (391)
|-..||+||+++.+..+..-+|+|.+| +|+-. +.++- .|. +++|+.+|
T Consensus 247 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E~-V~i~~-~k~-~i~l~G~g 294 (548)
T PLN02301 247 KYKTVKEAVASAPDNSKTRYVIYVKKG-TYKEN-VEIGK-KKK-NLMLVGDG 294 (548)
T ss_pred CcccHHHHHHhhhhcCCceEEEEEeCc-eeeEE-EEecC-CCc-eEEEEecC
Confidence 467799999854443212358999999 99753 33320 023 66666654
No 57
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.27 E-value=0.016 Score=60.20 Aligned_cols=132 Identities=11% Similarity=0.066 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCCCCCCCCcccEEEEeeeceE
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLN 123 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~~~~~~~~~~i~~~~~~nv~ 123 (391)
|-..||+||+++.......-+|+|.+| +|+-..+.++- .|. +++|+.+|. +...
T Consensus 283 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E~~v~i~~-~k~-ni~l~G~g~-----------------------~~Ti 336 (587)
T PLN02484 283 TFKTISEAIKKAPEHSSRRTIIYVKAG-RYEENNLKVGR-KKT-NLMFIGDGK-----------------------GKTV 336 (587)
T ss_pred CcccHHHHHHhccccCCCcEEEEEeCC-EEEEEEEEECC-CCc-eEEEEecCC-----------------------CCeE
Confidence 466799999854332223468899999 99875454531 033 666665542 1222
Q ss_pred Eeeee-EEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCc----eeEEE-eccccEEEEeEEEe
Q 047738 124 INGRG-LFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQ----VHIVV-DYSQDVHFKSLIID 197 (391)
Q Consensus 124 I~G~G-~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~----~~i~~-~~~~~v~i~n~~I~ 197 (391)
|+|.- ..++.+ . ++...+.+ ..+++..+|++|+|... -.+-+ ...+...+.+|+|.
T Consensus 337 It~~~~~~~~~~-t----------------~~saT~~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~ 398 (587)
T PLN02484 337 ITGGKSIFDNLT-T----------------FHTASFAA-TGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNII 398 (587)
T ss_pred EecCCcccCCCc-c----------------cceEEEEE-EcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEe
Confidence 22210 001100 0 02223333 45789999999998643 22322 35778899999998
Q ss_pred CCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 198 SPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 198 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
...|. +-.. ..+-..++|+|..
T Consensus 399 G~QDT-----Ly~~-~~Rqyy~~C~I~G 420 (587)
T PLN02484 399 GYQDT-----LYVH-SNRQFFRECDIYG 420 (587)
T ss_pred ccCcc-----cccC-CCcEEEEecEEEe
Confidence 85442 2111 2345667777765
No 58
>PLN02197 pectinesterase
Probab=97.24 E-value=0.027 Score=58.33 Aligned_cols=58 Identities=3% Similarity=0.025 Sum_probs=35.6
Q ss_pred eeCcEEEeeeEEEcCCc----eeEEE-eccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 162 QCNNVHINEIYVERSPQ----VHIVV-DYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 162 ~~~nv~I~~i~i~~~~~----~~i~~-~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
..+++..+|++|+|... ..+-+ ..++...+.+|+|....|. +... ..+-..++|+|..
T Consensus 362 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDT-----Ly~~-~~Rqyy~~C~I~G 424 (588)
T PLN02197 362 ESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDT-----LYVN-NGRQFYRNIVVSG 424 (588)
T ss_pred ECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcc-----eEec-CCCEEEEeeEEEe
Confidence 35788888888888643 12222 3567788888888875432 2222 2345666777665
No 59
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.23 E-value=0.024 Score=58.62 Aligned_cols=62 Identities=10% Similarity=-0.007 Sum_probs=35.4
Q ss_pred eEEEeeeCcEEEeeeEEEcCCc----eeEE-EeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 157 AVSFIQCNNVHINEIYVERSPQ----VHIV-VDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 157 ~i~~~~~~nv~I~~i~i~~~~~----~~i~-~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
.+.+. .+++..+|++|+|... -.+- -..++...+.+|+|....| -+... ..+-..++|+|..
T Consensus 334 T~~v~-~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD-----TLy~~-~~Rqyy~~C~I~G 400 (566)
T PLN02713 334 TFAVV-GQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQD-----TLYTH-SLRQFYRECDIYG 400 (566)
T ss_pred eEEEE-CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCc-----ceEEC-CCCEEEEeeEEec
Confidence 34443 4788888888887532 1222 2356677888888877433 22222 2345666666665
No 60
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.22 E-value=0.018 Score=59.76 Aligned_cols=131 Identities=9% Similarity=0.078 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCCCCCCCCcccEEEEeeeceE
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLN 123 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~~~~~~~~~~i~~~~~~nv~ 123 (391)
|-..||+||+++....+..-+|+|.+| +|.-. +.++- .|. +++|+.+|. +...
T Consensus 296 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~-~k~-~i~l~G~g~-----------------------~~Ti 348 (596)
T PLN02745 296 NFTTISDALAAMPAKYEGRYVIYVKQG-IYDET-VTVDK-KMV-NVTMYGDGS-----------------------QKTI 348 (596)
T ss_pred CcccHHHHHHhccccCCceEEEEEeCC-eeEEE-EEEcC-CCc-eEEEEecCC-----------------------CceE
Confidence 467899999854332213458999999 99753 33320 023 666665542 1112
Q ss_pred EeeeeE-EeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCc----eeEEE-eccccEEEEeEEEe
Q 047738 124 INGRGL-FDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQ----VHIVV-DYSQDVHFKSLIID 197 (391)
Q Consensus 124 I~G~G~-Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~----~~i~~-~~~~~v~i~n~~I~ 197 (391)
|+|... -+| |.. ++...+.+ ..+++..+|++|+|... -.+-+ ..++...+.+|+|.
T Consensus 349 It~~~~~~~g-----~~T------------~~saT~~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~ 410 (596)
T PLN02745 349 VTGNKNFADG-----VRT------------FRTATFVA-LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFE 410 (596)
T ss_pred EEECCcccCC-----Ccc------------eeeEEEEE-EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEe
Confidence 222100 000 000 12233444 56899999999998643 12222 36788999999999
Q ss_pred CCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 198 SPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 198 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
...|. +... ..+-..++|+|..
T Consensus 411 G~QDT-----Ly~~-~~Rqyy~~C~I~G 432 (596)
T PLN02745 411 GYQDT-----LYAQ-THRQFYRSCVITG 432 (596)
T ss_pred ecccc-----cccC-CCcEEEEeeEEEe
Confidence 85442 2111 2356677777765
No 61
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.20 E-value=0.029 Score=57.68 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHhhc--CCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEce
Q 047738 44 DSLAYAKAWNDACKA--NAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSG 95 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~--~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g 95 (391)
|-..||+||+++... ..+.-+|+|.+| +|+-. +.++- .|. +++|+.+|
T Consensus 234 ~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G-~Y~E~-V~i~~-~k~-~i~l~G~g 283 (539)
T PLN02995 234 HFNTVQAAIDVAGRRKVTSGRFVIYVKRG-IYQEN-INVRL-NND-DIMLVGDG 283 (539)
T ss_pred CccCHHHHHHhcccccCCCceEEEEEeCC-EeEEE-EEecC-CCC-cEEEEEcC
Confidence 466799999854321 113467999999 99764 33320 034 77777665
No 62
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.18 E-value=0.029 Score=56.72 Aligned_cols=132 Identities=10% Similarity=0.037 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCCCCCCCCcccEEEEeeece
Q 047738 43 DDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGL 122 (391)
Q Consensus 43 ddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~~~~~~~~~~i~~~~~~nv 122 (391)
-+-..||+||+++.+..+..-+|+|.+| +|+-. +.++- .|. +++|+.+|. +..
T Consensus 207 G~f~TIq~AI~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~-~k~-nItliGdg~-----------------------~~T 259 (509)
T PLN02488 207 GKYNTVNAAIAAAPEHSRKRFVIYIKTG-VYDEI-VRIGS-TKP-NLTLIGDGQ-----------------------DST 259 (509)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCC-eeEEE-EEecC-CCc-cEEEEecCC-----------------------Cce
Confidence 3466799999854432223468999999 99753 33320 033 677766642 111
Q ss_pred EEeeee-EEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCc----eeEEE-eccccEEEEeEEE
Q 047738 123 NINGRG-LFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQ----VHIVV-DYSQDVHFKSLII 196 (391)
Q Consensus 123 ~I~G~G-~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~----~~i~~-~~~~~v~i~n~~I 196 (391)
.|+|.- .-+|.. . ++...+.+. .+++..+|++|+|... -.+-+ ..++...+.+|.|
T Consensus 260 iIt~n~~~~~g~~-T----------------~~SATv~v~-g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f 321 (509)
T PLN02488 260 IITGNLSASNGKR-T----------------FYTATVASN-GDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRI 321 (509)
T ss_pred EEEEcccccCCCC-c----------------eeeEEEEEE-cCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEccee
Confidence 222210 001100 0 022234333 4789999999998753 12322 3567889999999
Q ss_pred eCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 197 DSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 197 ~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
....|. +... +.+-..++|.|..
T Consensus 322 ~GyQDT-----Ly~~-~~RqyyrdC~I~G 344 (509)
T PLN02488 322 EGYQDA-----LYPH-RDRQFYRECFITG 344 (509)
T ss_pred eccCcc-----eeeC-CCCEEEEeeEEee
Confidence 885432 2222 2355666776665
No 63
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=97.17 E-value=0.00038 Score=48.58 Aligned_cols=38 Identities=29% Similarity=0.354 Sum_probs=24.2
Q ss_pred ccCCCCchhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeee
Q 047738 36 AVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPI 78 (391)
Q Consensus 36 a~~dg~tddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i 78 (391)
|+|||+||||+||.+|+++ .+ .+.++=-.|.||+++++
T Consensus 1 A~GDGvtdDt~A~~a~l~a-~~----~g~~IDg~GlTykVs~l 38 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEA-SP----VGRKIDGAGLTYKVSSL 38 (67)
T ss_dssp ---CCCCE-HHHHHHHHHH-S-----TTS-EE-TT-EEEESS-
T ss_pred CCCccccCcHHHHHHHHhc-cC----CCeEEecCCceEEEeeC
Confidence 7899999999999999973 43 45566677889999865
No 64
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.16 E-value=0.033 Score=58.37 Aligned_cols=123 Identities=9% Similarity=0.063 Sum_probs=64.8
Q ss_pred eCcEEEeeeEEEcCCc----eeEEE-eccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE------------
Q 047738 163 CNNVHINEIYVERSPQ----VHIVV-DYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA------------ 225 (391)
Q Consensus 163 ~~nv~I~~i~i~~~~~----~~i~~-~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~------------ 225 (391)
.+++..+|++|+|... ..+-+ ...+...+.+|+|....|. +... ..+-..++|+|..
T Consensus 336 g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDT-----Ly~~-~~Rqyy~~C~I~GtVDFIFG~a~av 409 (670)
T PLN02217 336 GDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDT-----LYAH-SHRQFYRDCTISGTIDFLFGDAAAV 409 (670)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccch-----hccC-CCcEEEEeCEEEEeccEEecCceEE
Confidence 4678888888887643 12222 3567778888888774332 1111 2345566666665
Q ss_pred EEeEEEcCC------ceeEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEE----EEEeCCCC-ceEEEEEEEEEEEccC
Q 047738 226 VTYVNCGPG------HGISIGSLGKNGEEVKVENITVRHVNFCKTTNGAR----IKTWQAGK-GQVQHVEFSYMNFTEV 293 (391)
Q Consensus 226 i~n~~~~~g------~gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~----i~~~~~~~-g~v~nV~~~ni~i~~~ 293 (391)
+++|.+... .| .|-..+. .+...-.-++|.||++.....-+. .+.+-||. .....+.|.+..|.+.
T Consensus 410 fq~C~I~~r~~~~~~~~-~ITAqgr-~~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~ 486 (670)
T PLN02217 410 FQNCTLLVRKPLLNQAC-PITAHGR-KDPRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDF 486 (670)
T ss_pred EEccEEEEccCCCCCce-eEecCCC-CCCCCCceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEecccCCe
Confidence 445544311 12 1211111 112334578999999988643111 11222222 4567788888877653
No 65
>PLN02314 pectinesterase
Probab=97.13 E-value=0.036 Score=57.64 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEce
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSG 95 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g 95 (391)
|-..||+||+++.......-+|+|.+| +|+-. +.++- .|. +++|+.+|
T Consensus 289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G-~Y~E~-V~i~~-~k~-~i~l~G~g 336 (586)
T PLN02314 289 DVKTINEAVASIPKKSKSRFVIYVKEG-TYVEN-VLLDK-SKW-NVMIYGDG 336 (586)
T ss_pred CccCHHHHHhhccccCCceEEEEEcCc-eEEEE-EEecC-CCc-eEEEEecC
Confidence 466799999854332212347999999 99743 33320 023 66666664
No 66
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.07 E-value=0.033 Score=57.14 Aligned_cols=132 Identities=15% Similarity=0.166 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCCCCCCCCcccEEEEeeeceE
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLN 123 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~~~~~~~~~~i~~~~~~nv~ 123 (391)
|-..||+||+++....++.-+|+|.+| +|.-. +.++- .|. +++|+.+|. +...
T Consensus 243 ~f~TIq~Av~a~p~~~~~r~vI~Vk~G-vY~E~-V~I~~-~k~-~i~l~G~g~-----------------------~~ti 295 (537)
T PLN02506 243 HYRTITEAINEAPNHSNRRYIIYVKKG-VYKEN-IDMKK-KKT-NIMLVGDGI-----------------------GQTV 295 (537)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCC-eeeEE-EeccC-CCc-eEEEEEcCC-----------------------CCeE
Confidence 466799999854332223468999999 99654 22210 023 666655532 1222
Q ss_pred EeeeeEEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCce----eEE-EeccccEEEEeEEEeC
Q 047738 124 INGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQV----HIV-VDYSQDVHFKSLIIDS 198 (391)
Q Consensus 124 I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~----~i~-~~~~~~v~i~n~~I~~ 198 (391)
|++.... ..| |.. ++...+. -..+++..+|++|+|.... .+- ....+.+.+.+|+|.+
T Consensus 296 It~~~~~-~~g---~~T------------~~saT~~-v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G 358 (537)
T PLN02506 296 VTGNRNF-MQG---WTT------------FRTATVA-VSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEG 358 (537)
T ss_pred EEeCccc-cCC---CCc------------ccceEEE-EEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeec
Confidence 2221000 001 010 1233343 4558999999999987431 222 2357888999999988
Q ss_pred CCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 199 PETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 199 ~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
..|. +-.. ..+-..++|+|..
T Consensus 359 ~QDT-----Ly~~-~~rqyy~~C~I~G 379 (537)
T PLN02506 359 YQDT-----LYAH-SLRQFYRECEIYG 379 (537)
T ss_pred cccc-----ceec-CCceEEEeeEEec
Confidence 5432 2211 2345666666665
No 67
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.06 E-value=0.072 Score=54.84 Aligned_cols=130 Identities=12% Similarity=0.130 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHhhcCC----CCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCCCCCCCCcccEEEEee
Q 047738 44 DSLAYAKAWNDACKANA----QTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNI 119 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~----~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~~~~~~~~~~i~~~~~ 119 (391)
+-..||+||++ ++... +--+|||.+| +|+-. +.++- .|. +++|+.+|.
T Consensus 234 ~f~TI~~Av~a-~p~~~~~~~~r~vI~vk~G-~Y~E~-V~i~~-~k~-~i~l~G~g~----------------------- 285 (538)
T PLN03043 234 NFTTITDAIAA-APNNSKPEDGYFVIYAREG-YYEEY-VVVPK-NKK-NIMLIGDGI----------------------- 285 (538)
T ss_pred CCcCHHHHHHh-ccccCCCCcceEEEEEcCe-eeEEE-EEeCC-CCC-cEEEEecCC-----------------------
Confidence 46789999984 54420 1248999999 99743 33320 023 666666542
Q ss_pred eceEEeeee-EEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCc----eeEEE-eccccEEEEe
Q 047738 120 TGLNINGRG-LFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQ----VHIVV-DYSQDVHFKS 193 (391)
Q Consensus 120 ~nv~I~G~G-~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~----~~i~~-~~~~~v~i~n 193 (391)
+...|+|.- ..|| |.. ++...+.+ ..+++..+|++|+|... -.+-+ ..++...+.+
T Consensus 286 ~~tiIt~~~~~~dg-----~~T------------~~saT~~v-~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~ 347 (538)
T PLN03043 286 NKTIITGNHSVVDG-----WTT------------FNSSTFAV-SGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYR 347 (538)
T ss_pred CCeEEEeCCccCCC-----Ccc------------ccceEEEE-ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEe
Confidence 122222210 0111 110 12233444 34789999999988643 12322 3567788888
Q ss_pred EEEeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 194 LIIDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 194 ~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
|+|....+. +... +.+-..++|+|..
T Consensus 348 C~~~gyQDT-----Ly~~-~~rq~y~~c~I~G 373 (538)
T PLN03043 348 CSFEGYQDT-----LYVH-SLRQFYRECDIYG 373 (538)
T ss_pred eEEeccCcc-----cccC-CCcEEEEeeEEee
Confidence 988885432 2111 2345667777665
No 68
>PLN02916 pectinesterase family protein
Probab=97.06 E-value=0.039 Score=55.94 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=37.4
Q ss_pred eeeCcEEEeeeEEEcCCc----eeEEE-eccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 161 IQCNNVHINEIYVERSPQ----VHIVV-DYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 161 ~~~~nv~I~~i~i~~~~~----~~i~~-~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
...+++..+|++|+|... -.+-+ ..++...+.+|+|....| -+-.. +.+-..++|+|..
T Consensus 274 v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QD-----TLy~~-~~Rqyy~~C~I~G 337 (502)
T PLN02916 274 VSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQD-----TLFVH-SLRQFYRDCHIYG 337 (502)
T ss_pred EECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCc-----eeEeC-CCCEEEEecEEec
Confidence 344789999999998743 12222 356788999999988543 22222 2345666776665
No 69
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.03 E-value=0.0059 Score=54.84 Aligned_cols=99 Identities=22% Similarity=0.279 Sum_probs=58.6
Q ss_pred EEE-eeeCcEEEeeeEEEcC---------------CceeEEEeccccEEEEeEEEeCCCCC---CCCce-Eeec-CcccE
Q 047738 158 VSF-IQCNNVHINEIYVERS---------------PQVHIVVDYSQDVHFKSLIIDSPETS---PNTDG-IHIA-RSHDV 216 (391)
Q Consensus 158 i~~-~~~~nv~I~~i~i~~~---------------~~~~i~~~~~~~v~i~n~~I~~~~~~---~~~DG-i~~~-~s~nv 216 (391)
+.+ ..++||.|++++|+.. ....+.+..+++|+|++|++...... ...|| +++. .+++|
T Consensus 39 ~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~v 118 (200)
T PF00544_consen 39 LRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNV 118 (200)
T ss_dssp EEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEE
T ss_pred EEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceE
Confidence 444 4889999999999882 34567888888899999998875211 11444 5664 57888
Q ss_pred EEEeeEEEEEEeEEEcCCceeEEcccCCCCCcCcEEEEEEEeeEEeCC
Q 047738 217 SVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKT 264 (391)
Q Consensus 217 ~I~n~~i~~i~n~~~~~g~gi~igs~~~~~~~~~~~ni~i~N~~~~~~ 264 (391)
+|.+|.|..... +.-+|+......... .++++..+.+.++
T Consensus 119 TiS~n~f~~~~k-------~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 119 TISNNIFDNHNK-------TMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp EEES-EEEEEEE-------TCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred EEEchhcccccc-------ccccCCCCCccccCC-ceEEEEeEEECch
Confidence 888888876222 222333211111233 7888888877653
No 70
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.99 E-value=0.051 Score=56.49 Aligned_cols=131 Identities=15% Similarity=0.089 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCCCCCCCCcccEEEEeeeceE
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLN 123 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~~~~~~~~~~i~~~~~~nv~ 123 (391)
|-..||+||+++.....+.-+|+|.+| +|+-. +.++- .|. +++|+.+|. +...
T Consensus 286 ~f~TI~~Av~a~p~~~~~r~vI~ik~G-vY~E~-V~i~~-~k~-ni~l~Gdg~-----------------------~~Ti 338 (587)
T PLN02313 286 DFTTVAAAVAAAPEKSNKRFVIHIKAG-VYREN-VEVTK-KKK-NIMFLGDGR-----------------------GKTI 338 (587)
T ss_pred CCccHHHHHHhccccCCceEEEEEeCc-eeEEE-EEeCC-CCC-eEEEEecCC-----------------------CccE
Confidence 466899999854332213458999999 99753 22320 023 666665542 1222
Q ss_pred Eeeee-EEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCce----eEEE-eccccEEEEeEEEe
Q 047738 124 INGRG-LFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQV----HIVV-DYSQDVHFKSLIID 197 (391)
Q Consensus 124 I~G~G-~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~----~i~~-~~~~~v~i~n~~I~ 197 (391)
|+|.- ..||.. - ++...+.+ ..+++..+|++|+|.... .+-+ ..++...+.+|.|.
T Consensus 339 It~~~~~~~g~~--t---------------~~sat~~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~ 400 (587)
T PLN02313 339 ITGSRNVVDGST--T---------------FHSATVAA-VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMF 400 (587)
T ss_pred EEeCCcccCCCC--c---------------eeeEEEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEe
Confidence 22210 011110 0 02223333 347888888888876431 2222 35677788888888
Q ss_pred CCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 198 SPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 198 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
...|. +-.. +.+-..++|.|..
T Consensus 401 g~QDT-----Ly~~-~~rq~y~~c~I~G 422 (587)
T PLN02313 401 AYQDT-----LYVH-SNRQFFVKCHITG 422 (587)
T ss_pred cccch-----hccC-CCcEEEEeeEEee
Confidence 74432 1111 2334556666654
No 71
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.94 E-value=0.047 Score=56.55 Aligned_cols=132 Identities=15% Similarity=0.191 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCCCCCCCCcccEEEEeeeceE
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLN 123 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~~~~~~~~~~i~~~~~~nv~ 123 (391)
|-..||+||+++.......-+|+|.+| +|+-. +.++- .|. +++|+.+|. +...
T Consensus 270 ~f~TIq~Av~a~p~~~~~r~vI~Ik~G-vY~E~-V~i~~-~k~-~i~l~G~g~-----------------------~~Ti 322 (572)
T PLN02990 270 QYKTINEALNAVPKANQKPFVIYIKQG-VYNEK-VDVTK-KMT-HVTFIGDGP-----------------------TKTK 322 (572)
T ss_pred CCcCHHHHHhhCcccCCceEEEEEeCc-eeEEE-EEecC-CCC-cEEEEecCC-----------------------CceE
Confidence 466799999854332212358999999 99753 33320 033 677766652 1122
Q ss_pred Eeeee-EEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCce----eEEE-eccccEEEEeEEEe
Q 047738 124 INGRG-LFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQV----HIVV-DYSQDVHFKSLIID 197 (391)
Q Consensus 124 I~G~G-~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~----~i~~-~~~~~v~i~n~~I~ 197 (391)
|+|.- .-+|. |.. ++...+.+ ..+++..+|++|+|.... .+-+ ..++...+.+|+|.
T Consensus 323 It~~~~~~~g~----~~T------------~~saT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~ 385 (572)
T PLN02990 323 ITGSLNFYIGK----VKT------------YLTATVAI-NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQID 385 (572)
T ss_pred EEeccccCCCC----ccc------------eeeeEEEE-EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEe
Confidence 22210 00000 110 02223444 357999999999987532 2322 35778899999998
Q ss_pred CCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 198 SPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 198 ~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
...|. +... +.+-..++|+|..
T Consensus 386 G~QDT-----Ly~~-~~Rqyy~~C~I~G 407 (572)
T PLN02990 386 GYQDT-----LYVH-SHRQFFRDCTVSG 407 (572)
T ss_pred cccch-----hccC-CCcEEEEeeEEec
Confidence 85432 2111 2345566666665
No 72
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=96.90 E-value=0.086 Score=47.47 Aligned_cols=120 Identities=23% Similarity=0.301 Sum_probs=72.7
Q ss_pred EEEeeeEEEcCC------ceeEEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEEEEeEEEcCCceeEE
Q 047738 166 VHINEIYVERSP------QVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHGISI 239 (391)
Q Consensus 166 v~I~~i~i~~~~------~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~i~n~~~~~g~gi~i 239 (391)
+.|++++|.... ..++++..+++++|+||++.+. +.+|+.+..+....+.+..... ++.+
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~~----------~~~~ 159 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHVS----------GIFI 159 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEEE----------EEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccce----------eeee
Confidence 347777775433 2457777788888888888773 3456666544444444332221 1222
Q ss_pred cccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCCCCceEEEEEEEEEEEcc-CCceEEEEeeeCCCCCcCCCCCcceE
Q 047738 240 GSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTE-VQNPIIIDQYYCDQKDVCAKTSTGVH 318 (391)
Q Consensus 240 gs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~~g~v~nV~~~ni~i~~-~~~~i~i~~~~~~~~~~~~~~~~~~~ 318 (391)
.. ...++.+.|+.+.....|+.... ++++++|+.+++ ...+|.+... ....
T Consensus 160 ~~--------~~~~~~~~~~~~~~~~~g~~~~~--------~~~~i~n~~~~~~~~~gi~i~~~------------~~~~ 211 (225)
T PF12708_consen 160 DN--------GSNNVIVNNCIFNGGDNGIILGN--------NNITISNNTFEGNCGNGINIEGG------------SNII 211 (225)
T ss_dssp ES--------CEEEEEEECEEEESSSCSEECEE--------EEEEEECEEEESSSSESEEEEEC------------SEEE
T ss_pred cc--------ceeEEEECCccccCCCceeEeec--------ceEEEEeEEECCccceeEEEECC------------eEEE
Confidence 11 12567778888888877832222 789999999987 6788888652 2256
Q ss_pred EEEEEEEeE
Q 047738 319 ISDVRYLNA 327 (391)
Q Consensus 319 i~~Itf~ni 327 (391)
|++++|+|+
T Consensus 212 i~n~~i~~~ 220 (225)
T PF12708_consen 212 ISNNTIENC 220 (225)
T ss_dssp EEEEEEESS
T ss_pred EEeEEEECC
Confidence 777777765
No 73
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.61 E-value=0.35 Score=47.29 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=26.9
Q ss_pred HHHHHHHHhhcCCCCCEEEecCCCeEEEe-eeeecCCCCCcceEEEEce
Q 047738 48 YAKAWNDACKANAQTPTMIIPKGKTFLVH-PITFSGPCKSSNISIQLSG 95 (391)
Q Consensus 48 iq~Ai~~a~~~~~~g~~v~iP~G~~y~~~-~i~l~~~~~s~~~~l~l~g 95 (391)
+..||+. ..+|.+-||.+|.+. ++.++ + -..|+..|
T Consensus 57 le~~I~~-------haKVaL~Pg~~Y~i~~~V~I~----~-~cYIiGnG 93 (386)
T PF01696_consen 57 LEEAIRQ-------HAKVALRPGAVYVIRKPVNIR----S-CCYIIGNG 93 (386)
T ss_pred HHHHHHh-------cCEEEeCCCCEEEEeeeEEec----c-eEEEECCC
Confidence 6677764 778999999999985 78886 3 56665554
No 74
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.089 Score=49.94 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=75.5
Q ss_pred eEEEeeeCcEEEeeeEEEcCCce------eEEE-eccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEEEEeE
Q 047738 157 AVSFIQCNNVHINEIYVERSPQV------HIVV-DYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYV 229 (391)
Q Consensus 157 ~i~~~~~~nv~I~~i~i~~~~~~------~i~~-~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~i~n~ 229 (391)
.+.+. ..++.|++++++++..- ++.+ .......|+++++.. +.-||-+.++.++.|+.++|..-+..
T Consensus 71 ~vtv~-aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N~l~~-----n~~Gi~l~~s~d~~i~~n~i~G~~~~ 144 (408)
T COG3420 71 YVTVA-APDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHNDLIG-----NSFGIYLHGSADVRIEGNTIQGLADL 144 (408)
T ss_pred EEEEe-CCCceeeeEEEecCCCCcccccceEEeccCcccceEEcccccc-----cceEEEEeccCceEEEeeEEeecccc
Confidence 44444 57899999999976531 2222 244566788888776 56799999999999999999885555
Q ss_pred EE-cCCceeEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEe
Q 047738 230 NC-GPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTW 273 (391)
Q Consensus 230 ~~-~~g~gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~ 273 (391)
.. ..|.||.+.. ..+..|..+++....+||+.+..
T Consensus 145 r~~~rGnGI~vyN---------a~~a~V~~ndisy~rDgIy~~~S 180 (408)
T COG3420 145 RVAERGNGIYVYN---------APGALVVGNDISYGRDGIYSDTS 180 (408)
T ss_pred chhhccCceEEEc---------CCCcEEEcCccccccceEEEccc
Confidence 44 3578888855 46788889999999999998754
No 75
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.03 E-value=0.022 Score=51.16 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=64.1
Q ss_pred eEEEe-ccccEEEEeEEEeCC-----------CCCCCCceEeecCcccEEEEeeEEEEE-EeEEEcCCce-eEEcccCCC
Q 047738 180 HIVVD-YSQDVHFKSLIIDSP-----------ETSPNTDGIHIARSHDVSVHTSIIAAV-TYVNCGPGHG-ISIGSLGKN 245 (391)
Q Consensus 180 ~i~~~-~~~~v~i~n~~I~~~-----------~~~~~~DGi~~~~s~nv~I~n~~i~~i-~n~~~~~g~g-i~igs~~~~ 245 (391)
++.+. .++||.|+|++|... ......|+|.+..+++|+|++|.+... ..+.....+| +.+.
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~----- 112 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIK----- 112 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEE-----
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEE-----
Confidence 34444 789999999999982 122467999999999999999999972 1111111444 5552
Q ss_pred CCcCcEEEEEEEeeEEeCCCeEEEEEEeCCC--CceEEEEEEEEEEEccC
Q 047738 246 GEEVKVENITVRHVNFCKTTNGARIKTWQAG--KGQVQHVEFSYMNFTEV 293 (391)
Q Consensus 246 ~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~--~g~v~nV~~~ni~i~~~ 293 (391)
....+|+|.+|.+.+...+..+...+.. ... .+|||-..-+.++
T Consensus 113 ---~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 113 ---KGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp ---SSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred ---eCCceEEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 3468999999999887665555543221 112 6777777766543
No 76
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=95.09 E-value=3.2 Score=39.50 Aligned_cols=39 Identities=10% Similarity=0.223 Sum_probs=26.3
Q ss_pred eeCcEEEeeeEEEcCCceeE---------EEeccccEEEEeEEEeCCC
Q 047738 162 QCNNVHINEIYVERSPQVHI---------VVDYSQDVHFKSLIIDSPE 200 (391)
Q Consensus 162 ~~~nv~I~~i~i~~~~~~~i---------~~~~~~~v~i~n~~I~~~~ 200 (391)
.-+++.++++++++....+. .-...+.+.++||++....
T Consensus 187 ~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~Q 234 (405)
T COG4677 187 QNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQ 234 (405)
T ss_pred ecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeecc
Confidence 34677788888877654432 2246677889999998754
No 77
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=92.40 E-value=5.6 Score=36.77 Aligned_cols=101 Identities=13% Similarity=0.171 Sum_probs=56.7
Q ss_pred cccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEEEEeEEEcCCceeEEcccCCCCCcCcEEEEEEEeeEEeCCC
Q 047738 186 SQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTT 265 (391)
Q Consensus 186 ~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~i~n~~~~~g~gi~igs~~~~~~~~~~~ni~i~N~~~~~~~ 265 (391)
..+.+|++++|.++.. ...-|+.+.++ +.+|+||.|.. ...+||.+-... ....+.+++|+++.+....
T Consensus 96 ~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~------~~~~GI~v~g~~---~~~~i~~~vI~GN~~~~~~ 164 (246)
T PF07602_consen 96 ANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTN------NGREGIFVTGTS---ANPGINGNVISGNSIYFNK 164 (246)
T ss_pred cCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEEC------CccccEEEEeee---cCCcccceEeecceEEecC
Confidence 4455666666666521 12345555544 67766666654 113455442210 1346778889999888888
Q ss_pred eEEEEEEeCCCCceEEEEEEEEEEEccCCceEEEEe
Q 047738 266 NGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQ 301 (391)
Q Consensus 266 ~gi~i~~~~~~~g~v~nV~~~ni~i~~~~~~i~i~~ 301 (391)
.||.+..... + +.| .++|..+++...+|.+..
T Consensus 165 ~Gi~i~~~~~--~-~~n-~I~NN~I~~N~~Gi~~~~ 196 (246)
T PF07602_consen 165 TGISISDNAA--P-VEN-KIENNIIENNNIGIVAIG 196 (246)
T ss_pred cCeEEEcccC--C-ccc-eeeccEEEeCCcCeEeec
Confidence 8888875433 2 222 335555555445766543
No 78
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=92.05 E-value=0.29 Score=32.15 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=25.7
Q ss_pred EEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEE
Q 047738 181 IVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIA 224 (391)
Q Consensus 181 i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~ 224 (391)
+.+..+.+.+|++.++.. +.+||++..+.+-+|+++.+.
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 455566666677777766 345777777677777666654
No 79
>PLN02773 pectinesterase
Probab=89.65 E-value=8.6 Score=37.01 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEc
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLS 94 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~ 94 (391)
|-.-||+||+++.......-+|+|.+| +|+- .+.++.. |. +++|+.+
T Consensus 16 df~TIq~Aida~P~~~~~~~~I~Ik~G-~Y~E-~V~I~~~-k~-~itl~G~ 62 (317)
T PLN02773 16 DYCTVQDAIDAVPLCNRCRTVIRVAPG-VYRQ-PVYVPKT-KN-LITLAGL 62 (317)
T ss_pred CccCHHHHHhhchhcCCceEEEEEeCc-eEEE-EEEECcC-Cc-cEEEEeC
Confidence 366799999954433212357999999 9973 3444310 23 6777665
No 80
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=89.59 E-value=1.7 Score=43.27 Aligned_cols=111 Identities=10% Similarity=0.103 Sum_probs=46.0
Q ss_pred eEEEeeeCcEEEeeeEEEcCCceeEEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEEEEeEEEcCCce
Q 047738 157 AVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHG 236 (391)
Q Consensus 157 ~i~~~~~~nv~I~~i~i~~~~~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~i~n~~~~~g~g 236 (391)
+|..+.+ .-++++-+|++|.. .+.+.+..+-+|++..|.......++-||.+.+ ++-+|.|++|.....-.+. .+
T Consensus 217 IISvKS~-~N~ir~Ntf~es~G-~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~-~~H~I~nNY~~gl~g~~~~--~~ 291 (425)
T PF14592_consen 217 IISVKSS-DNTIRNNTFRESQG-SLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIG-EGHTIYNNYFEGLTGTRFR--GA 291 (425)
T ss_dssp EEEEESB-T-EEES-EEES-SS-EEEEEE-SS-EEES-EEEE-SSSS-B--EEE-S-BS-EEES-EEEESSB-TTT--TS
T ss_pred EEEeecC-CceEeccEEEeccc-eEEEecCCCceEeccEEecCCCcCCCCceEEec-CCcEEEcceeeccccceee--cc
Confidence 3444433 23455556666543 555666666666666666543323455777766 4566677776652211111 12
Q ss_pred eEEcc--cC-CCCCcCcEEEEEEEeeEEeCCCeEEEEEE
Q 047738 237 ISIGS--LG-KNGEEVKVENITVRHVNFCKTTNGARIKT 272 (391)
Q Consensus 237 i~igs--~~-~~~~~~~~~ni~i~N~~~~~~~~gi~i~~ 272 (391)
+.+.. .. .-.....+.|++|.++++.++..+|.+..
T Consensus 292 ~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~~i~~g~ 330 (425)
T PF14592_consen 292 LAVMNGVPNSPLNRYDQVKNVLIANNTFINCKSPIHFGA 330 (425)
T ss_dssp EE-EEE--BSTTSTT---BSEEEES-EEES-SEEEESST
T ss_pred eeeccCCCCCCcccccccceeEEecceEEccCCceEEcc
Confidence 22111 00 00113456777777777777766666643
No 81
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=87.58 E-value=4.1 Score=38.15 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=36.1
Q ss_pred CcEEEeeeEEEcCCceeEEEeccccEEEEeEEEeC--CCCCC----CCceEeecCcccEEEEeeEEEE
Q 047738 164 NNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDS--PETSP----NTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 164 ~nv~I~~i~i~~~~~~~i~~~~~~~v~i~n~~I~~--~~~~~----~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
+|+.+-|++-.++.+ -+|.+..++..|+|++-.+ |+++. ..--+.+++|+|..|+|..+.+
T Consensus 246 knfvvanitgs~crq-lvhvengkhfvirnvkaknitpdfskkagidnatvaiygcdnfvidni~mvn 312 (464)
T PRK10123 246 KNFVVANITGSDCRQ-LIHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMIN 312 (464)
T ss_pred hhEEEEeccCcChhh-eEEecCCcEEEEEeeeccccCCCchhhcCCCcceEEEEcccceEEecccccc
Confidence 455555555555533 5777788888888888766 22211 1112445678887776655544
No 82
>PLN02634 probable pectinesterase
Probab=87.15 E-value=16 Score=35.83 Aligned_cols=62 Identities=8% Similarity=0.031 Sum_probs=37.9
Q ss_pred eEEEeeeCcEEEeeeEEEcCCc---------eeEE-EeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 157 AVSFIQCNNVHINEIYVERSPQ---------VHIV-VDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 157 ~i~~~~~~nv~I~~i~i~~~~~---------~~i~-~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
.+.+ ..+++..+|++|+|... -.+- ....+...+.+|++....|. +-.. ..+-..++|.|..
T Consensus 143 Tv~V-~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDT-----L~~~-~gR~yf~~CyIeG 214 (359)
T PLN02634 143 SVTV-YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDT-----LCDD-AGRHYFKECYIEG 214 (359)
T ss_pred EEEE-ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccce-----eeeC-CCCEEEEeeEEcc
Confidence 3444 35789999999998742 1122 23567789999999885432 2211 2345666666664
No 83
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=85.11 E-value=24 Score=36.91 Aligned_cols=38 Identities=5% Similarity=0.047 Sum_probs=22.7
Q ss_pred eCcEEEeeeEEEcCCce----eEEE-eccccEEEEeEEEeCCC
Q 047738 163 CNNVHINEIYVERSPQV----HIVV-DYSQDVHFKSLIIDSPE 200 (391)
Q Consensus 163 ~~nv~I~~i~i~~~~~~----~i~~-~~~~~v~i~n~~I~~~~ 200 (391)
.+++..+|++|+|...- .+-+ ..++...+.+|+|....
T Consensus 344 ~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~Q 386 (565)
T PLN02468 344 GKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQ 386 (565)
T ss_pred CCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEecc
Confidence 46777777777765421 1222 34566777777777643
No 84
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=85.11 E-value=4.3 Score=40.03 Aligned_cols=8 Identities=25% Similarity=0.073 Sum_probs=4.5
Q ss_pred HHHHHHHH
Q 047738 48 YAKAWNDA 55 (391)
Q Consensus 48 iq~Ai~~a 55 (391)
+|.|-++|
T Consensus 20 LQdaA~aA 27 (549)
T PF09251_consen 20 LQDAATAA 27 (549)
T ss_dssp HHHHHHH-
T ss_pred HHHHHhhh
Confidence 66666643
No 85
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=84.36 E-value=30 Score=34.15 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=40.2
Q ss_pred eCcEEEeeeEEEcCC-ceeEEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 163 CNNVHINEIYVERSP-QVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 163 ~~nv~I~~i~i~~~~-~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
-.+|++.|+.|...+ .-++.+....++++-+|.+.+. ..-.+..+ ....|++|.|..
T Consensus 120 M~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf----~g~cl~~~--~~~~VrGC~F~~ 177 (386)
T PF01696_consen 120 MEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGF----HGTCLESW--AGGEVRGCTFYG 177 (386)
T ss_pred eeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecC----cceeEEEc--CCcEEeeeEEEE
Confidence 356788888887666 5567777778888999988883 22333333 578888888765
No 86
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=82.07 E-value=26 Score=36.13 Aligned_cols=60 Identities=10% Similarity=-0.041 Sum_probs=37.7
Q ss_pred EeeeCcEEEeeeEEEcCCce----eEE-EeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 160 FIQCNNVHINEIYVERSPQV----HIV-VDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 160 ~~~~~nv~I~~i~i~~~~~~----~i~-~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
....+++..+|++|+|.... .+- -...+...+.+|++....|. +-.. ..+-..++|+|..
T Consensus 309 ~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDT-----Ly~~-~~Rqyy~~C~I~G 373 (529)
T PLN02170 309 AAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDS-----LYTH-SKRQFYRETDITG 373 (529)
T ss_pred EEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCc-----ceeC-CCCEEEEeeEEcc
Confidence 34458999999999987431 222 23577889999999885442 2222 2344556666664
No 87
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=80.53 E-value=25 Score=36.14 Aligned_cols=62 Identities=10% Similarity=-0.016 Sum_probs=37.1
Q ss_pred eEEEeeeCcEEEeeeEEEcCCce----eEE-EeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 157 AVSFIQCNNVHINEIYVERSPQV----HIV-VDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 157 ~i~~~~~~nv~I~~i~i~~~~~~----~i~-~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
.+.+ ..+++..+|++|+|.... .+- -...+...+.+|.|....+. +-.. ..+-..++|+|..
T Consensus 264 T~~v-~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDT-----Ly~~-~~rqyy~~C~I~G 330 (497)
T PLN02698 264 TFTI-TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDT-----LYAA-ALRQFYRECDIYG 330 (497)
T ss_pred eEEE-ECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccch-----heeC-CCcEEEEeeEEEe
Confidence 4444 347899999999887532 222 23567788888888874432 2111 2234566666665
No 88
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=80.45 E-value=18 Score=37.69 Aligned_cols=98 Identities=7% Similarity=0.049 Sum_probs=64.5
Q ss_pred ccccEEEEeEEEeCCCCCCCCceEeec-CcccEEEEeeEEEE-------------EEeEEEcCCceeEEcccCCCCCcCc
Q 047738 185 YSQDVHFKSLIIDSPETSPNTDGIHIA-RSHDVSVHTSIIAA-------------VTYVNCGPGHGISIGSLGKNGEEVK 250 (391)
Q Consensus 185 ~~~~v~i~n~~I~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~-------------i~n~~~~~g~gi~igs~~~~~~~~~ 250 (391)
..+++..+|++|.|........++-+. .++...+.+|.|.. .++|.+.+.-.+-+|.
T Consensus 338 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~--------- 408 (566)
T PLN02713 338 VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGN--------- 408 (566)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccceeccc---------
Confidence 457899999999996433344566554 56889999999987 7788887666666655
Q ss_pred EEEEEEEeeEEeCCC----eEEEEEEeCCC--CceEEEEEEEEEEEccC
Q 047738 251 VENITVRHVNFCKTT----NGARIKTWQAG--KGQVQHVEFSYMNFTEV 293 (391)
Q Consensus 251 ~~ni~i~N~~~~~~~----~gi~i~~~~~~--~g~v~nV~~~ni~i~~~ 293 (391)
-.++|+||++.... ..-.|.. .++ ...-..+.|.||++...
T Consensus 409 -a~avfq~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 409 -AAVVFQNCNLYPRLPMQGQFNTITA-QGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred -ceEEEeccEEEEecCCCCCcceeee-cCCCCCCCCCEEEEEcCEEecC
Confidence 26778888875531 1123332 121 23345788999998753
No 89
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=79.89 E-value=27 Score=36.26 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=36.9
Q ss_pred eeeCcEEEeeeEEEcCCc----eeEEE-eccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 161 IQCNNVHINEIYVERSPQ----VHIVV-DYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 161 ~~~~nv~I~~i~i~~~~~----~~i~~-~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
...+++..+|++|+|... ..+-+ ..++...+.+|+|.+..|. +-.. ..+-..++|.|..
T Consensus 320 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDT-----Ly~~-~~Rqyy~~C~I~G 383 (548)
T PLN02301 320 AVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDT-----LYAH-SLRQFYRDSYITG 383 (548)
T ss_pred EECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecccc-----ceec-CCcEEEEeeEEEe
Confidence 345789999999998643 22222 3567888999998885432 2211 2345667777665
No 90
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=79.48 E-value=4.8 Score=26.18 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=35.6
Q ss_pred EEEeeeCcEEEeeeEEEcCCceeEEEeccccEEEEeEEEeC
Q 047738 158 VSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDS 198 (391)
Q Consensus 158 i~~~~~~nv~I~~i~i~~~~~~~i~~~~~~~v~i~n~~I~~ 198 (391)
|.+..+.+.+|++-++.+... ++++..+.+-++++.++..
T Consensus 2 I~l~~s~~~~i~~N~i~~~~~-GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNNSY-GIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeCCCC-EEEEEeCCCCEeECCEEEc
Confidence 677888899999999999887 9999999999999988876
No 91
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=79.48 E-value=30 Score=35.94 Aligned_cols=100 Identities=4% Similarity=0.006 Sum_probs=66.0
Q ss_pred EeccccEEEEeEEEeCCCCCCCCceEeec-CcccEEEEeeEEEE-------------EEeEEEcCCceeEEcccCCCCCc
Q 047738 183 VDYSQDVHFKSLIIDSPETSPNTDGIHIA-RSHDVSVHTSIIAA-------------VTYVNCGPGHGISIGSLGKNGEE 248 (391)
Q Consensus 183 ~~~~~~v~i~n~~I~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~-------------i~n~~~~~g~gi~igs~~~~~~~ 248 (391)
....++...+|++|.|........++-+. .++...+.+|.|.. .++|.+.+.-.+-+|.
T Consensus 309 ~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDFIFG~------- 381 (538)
T PLN03043 309 AVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGN------- 381 (538)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccceEeec-------
Confidence 34557899999999996433345566664 56889999999988 7788887766666655
Q ss_pred CcEEEEEEEeeEEeCCC----eEEEEEEeCCC--CceEEEEEEEEEEEccC
Q 047738 249 VKVENITVRHVNFCKTT----NGARIKTWQAG--KGQVQHVEFSYMNFTEV 293 (391)
Q Consensus 249 ~~~~ni~i~N~~~~~~~----~gi~i~~~~~~--~g~v~nV~~~ni~i~~~ 293 (391)
-..+|+||++.-.. ..-.|.. .++ ...-..+.|.||++...
T Consensus 382 ---a~avfq~c~i~~r~~~~~~~~~iTA-~~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 382 ---AAAIFQNCNLYARKPMANQKNAFTA-QGRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred ---ceeeeeccEEEEecCCCCCCceEEe-cCCCCCCCCceEEEEecEEecC
Confidence 26778888875521 1123332 121 22335788999998764
No 92
>PLN02665 pectinesterase family protein
Probab=79.26 E-value=35 Score=33.54 Aligned_cols=61 Identities=7% Similarity=0.015 Sum_probs=39.3
Q ss_pred EEeeeCcEEEeeeEEEcCCc---------eeEE-EeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 159 SFIQCNNVHINEIYVERSPQ---------VHIV-VDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 159 ~~~~~~nv~I~~i~i~~~~~---------~~i~-~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
....++++..+|++|+|... -.+- ....+...+.||++....|. +-.. ..+-..++|+|..
T Consensus 149 v~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDT-----L~~~-~gr~yf~~CyIeG 219 (366)
T PLN02665 149 LIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDT-----LCDD-KGRHFFKDCYIEG 219 (366)
T ss_pred EEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccce-----eEeC-CCCEEEEeeEEee
Confidence 34456899999999998642 1222 23567889999999885432 2222 2356677777766
No 93
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=78.85 E-value=29 Score=36.04 Aligned_cols=99 Identities=8% Similarity=0.106 Sum_probs=64.4
Q ss_pred eccccEEEEeEEEeCCCCCCCCceEeec-CcccEEEEeeEEEE-------------EEeEEEcCCceeEEcccCCCCCcC
Q 047738 184 DYSQDVHFKSLIIDSPETSPNTDGIHIA-RSHDVSVHTSIIAA-------------VTYVNCGPGHGISIGSLGKNGEEV 249 (391)
Q Consensus 184 ~~~~~v~i~n~~I~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~-------------i~n~~~~~g~gi~igs~~~~~~~~ 249 (391)
...++...+|++|.|.........+-+. .++++.+.+|.|.. .++|.+.+.-.+-+|.
T Consensus 314 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~-------- 385 (541)
T PLN02416 314 VSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHSFRQFYRECDIYGTIDYIFGN-------- 385 (541)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCCCceEEEeeEEeeccceeecc--------
Confidence 3567899999999986543344555554 46889999999987 6778777666666655
Q ss_pred cEEEEEEEeeEEeCCCe--E--EEEEEeCCC--CceEEEEEEEEEEEccC
Q 047738 250 KVENITVRHVNFCKTTN--G--ARIKTWQAG--KGQVQHVEFSYMNFTEV 293 (391)
Q Consensus 250 ~~~ni~i~N~~~~~~~~--g--i~i~~~~~~--~g~v~nV~~~ni~i~~~ 293 (391)
-..+|+||++..... | -.|.. +++ ...-....|.||++...
T Consensus 386 --a~avfq~c~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 386 --AAVVFQACNIVSKMPMPGQFTVITA-QSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred --ceEEEeccEEEEecCCCCCceEEEC-CCCCCCCCCCEEEEEeeEEecC
Confidence 266777777755321 1 23322 221 12335788999998753
No 94
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=78.63 E-value=28 Score=37.03 Aligned_cols=98 Identities=5% Similarity=0.013 Sum_probs=66.5
Q ss_pred ccccEEEEeEEEeCCCCCCCCceEeec-CcccEEEEeeEEEE-------------EEeEEEcCCceeEEcccCCCCCcCc
Q 047738 185 YSQDVHFKSLIIDSPETSPNTDGIHIA-RSHDVSVHTSIIAA-------------VTYVNCGPGHGISIGSLGKNGEEVK 250 (391)
Q Consensus 185 ~~~~v~i~n~~I~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~-------------i~n~~~~~g~gi~igs~~~~~~~~~ 250 (391)
..++...+|++|.|........++-+. .+++..+.||.|.. +++|.+.+.-.+-+|.
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~--------- 405 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGD--------- 405 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecC---------
Confidence 457788999999986433345666664 57899999999987 6778777666666655
Q ss_pred EEEEEEEeeEEeCCC----eEEEEEEeCCC--CceEEEEEEEEEEEccC
Q 047738 251 VENITVRHVNFCKTT----NGARIKTWQAG--KGQVQHVEFSYMNFTEV 293 (391)
Q Consensus 251 ~~ni~i~N~~~~~~~----~gi~i~~~~~~--~g~v~nV~~~ni~i~~~ 293 (391)
-..+|+||++.... ..-.|.. .++ ...-..+.|.||++...
T Consensus 406 -a~avfq~C~I~~r~~~~~~~~~ITA-qgr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 406 -AAAVFQNCTLLVRKPLLNQACPITA-HGRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred -ceEEEEccEEEEccCCCCCceeEec-CCCCCCCCCceEEEEeeEEecC
Confidence 25788888886531 1233432 222 23445789999999864
No 95
>PLN02176 putative pectinesterase
Probab=78.49 E-value=29 Score=33.78 Aligned_cols=62 Identities=8% Similarity=0.050 Sum_probs=38.8
Q ss_pred eEEEeeeCcEEEeeeEEEcCCc----------eeEE-EeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 157 AVSFIQCNNVHINEIYVERSPQ----------VHIV-VDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 157 ~i~~~~~~nv~I~~i~i~~~~~----------~~i~-~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
.+.+ .++++..+|++|+|... ..+- ....+.+.+.+|++....|. +-.. ..+-..++|.|+.
T Consensus 116 T~~v-~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDT-----Ly~~-~gRqyf~~CyIeG 188 (340)
T PLN02176 116 TFTS-YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDT-----LFDG-KGRHYYKRCVISG 188 (340)
T ss_pred EEEE-ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccce-----eEeC-CcCEEEEecEEEe
Confidence 3444 46899999999998642 1222 23567889999999875432 2211 2356666777665
No 96
>PLN02304 probable pectinesterase
Probab=78.28 E-value=67 Score=31.76 Aligned_cols=99 Identities=6% Similarity=0.052 Sum_probs=63.9
Q ss_pred eccccEEEEeEEEeCCCC-----CCCCceEeec-CcccEEEEeeEEEE-------------EEeEEEcCCceeEEcccCC
Q 047738 184 DYSQDVHFKSLIIDSPET-----SPNTDGIHIA-RSHDVSVHTSIIAA-------------VTYVNCGPGHGISIGSLGK 244 (391)
Q Consensus 184 ~~~~~v~i~n~~I~~~~~-----~~~~DGi~~~-~s~nv~I~n~~i~~-------------i~n~~~~~g~gi~igs~~~ 244 (391)
...++...+|++|.|... .....++-+. .+++..+.+|.|.. +++|.+.+.-.+-+|.
T Consensus 159 v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~gR~Yf~~CyIeG~VDFIFG~--- 235 (379)
T PLN02304 159 VFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGD--- 235 (379)
T ss_pred EECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCCCCEEEEeeEEcccccEEecc---
Confidence 345788999999998632 1123455554 46899999999987 7888888776766655
Q ss_pred CCCcCcEEEEEEEeeEEeCCCe---------EEEEEEeC-CCCceEEEEEEEEEEEcc
Q 047738 245 NGEEVKVENITVRHVNFCKTTN---------GARIKTWQ-AGKGQVQHVEFSYMNFTE 292 (391)
Q Consensus 245 ~~~~~~~~ni~i~N~~~~~~~~---------gi~i~~~~-~~~g~v~nV~~~ni~i~~ 292 (391)
-..+|+||++..... .-+|.... .....-....|.||++..
T Consensus 236 -------g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg 286 (379)
T PLN02304 236 -------ARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGG 286 (379)
T ss_pred -------ceEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCceEEEECCEEcc
Confidence 256788888875322 12343221 112333467799999975
No 97
>PLN02432 putative pectinesterase
Probab=77.81 E-value=44 Score=31.81 Aligned_cols=59 Identities=7% Similarity=-0.057 Sum_probs=37.3
Q ss_pred eeeCcEEEeeeEEEcCCc---eeEE-EeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 161 IQCNNVHINEIYVERSPQ---VHIV-VDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 161 ~~~~nv~I~~i~i~~~~~---~~i~-~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
...+++..+|++|+|... -.+- ....+.+.+.+|+|....+ -+-.. ..+-..+||.|..
T Consensus 91 v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QD-----TLy~~-~gr~yf~~c~I~G 153 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQD-----TLLDD-TGRHYYRNCYIEG 153 (293)
T ss_pred EECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccc-----eeEEC-CCCEEEEeCEEEe
Confidence 345799999999998742 1222 2356788899999987543 22222 2356667777665
No 98
>PLN02314 pectinesterase
Probab=77.75 E-value=32 Score=36.14 Aligned_cols=58 Identities=9% Similarity=-0.022 Sum_probs=33.6
Q ss_pred eeCcEEEeeeEEEcCCc----eeEE-EeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 162 QCNNVHINEIYVERSPQ----VHIV-VDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 162 ~~~nv~I~~i~i~~~~~----~~i~-~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
..+++..+|++|+|... -.+- -...+...+.+|+|....+. +... +.+-..++|+|..
T Consensus 363 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDT-----Ly~~-~~rq~y~~C~I~G 425 (586)
T PLN02314 363 AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDT-----LYAH-SNRQFYRDCDITG 425 (586)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccch-----heeC-CCCEEEEeeEEEe
Confidence 45788888888887642 1222 23566777888888774432 2111 2344556666655
No 99
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=77.21 E-value=90 Score=32.62 Aligned_cols=118 Identities=11% Similarity=0.034 Sum_probs=68.1
Q ss_pred eCcEEEeeeEEEcCCceeEEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEEEEeE-EEcCC-c-eeEE
Q 047738 163 CNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYV-NCGPG-H-GISI 239 (391)
Q Consensus 163 ~~nv~I~~i~i~~~~~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~i~n~-~~~~g-~-gi~i 239 (391)
.+...+.++.|... ++.+.. +..+--+++|.|...-| - |.+.-.+.++||.|.....- ....+ . .|.-
T Consensus 357 ~D~~~f~~c~~~G~-QDTLy~-~~~rq~y~~C~I~GtVD-----F--IFG~a~avfq~c~i~~~~~~~~~~~~~~~~iTA 427 (553)
T PLN02708 357 SDLSVIENCEFLGN-QDTLYA-HSLRQFYKSCRIQGNVD-----F--IFGNSAAVFQDCAILIAPRQLKPEKGENNAVTA 427 (553)
T ss_pred CCcEEEEeeeeeec-ccccee-CCCceEEEeeEEeecCC-----E--EecCceEEEEccEEEEeccccCCCCCCceEEEe
Confidence 57788888888765 344443 34556799999998532 1 24556899999999852110 11111 2 2333
Q ss_pred cccCCCCCcCcEEEEEEEeeEEeCCCeEEE--------EEEeCCCC-ceEEEEEEEEEEEcc
Q 047738 240 GSLGKNGEEVKVENITVRHVNFCKTTNGAR--------IKTWQAGK-GQVQHVEFSYMNFTE 292 (391)
Q Consensus 240 gs~~~~~~~~~~~ni~i~N~~~~~~~~gi~--------i~~~~~~~-g~v~nV~~~ni~i~~ 292 (391)
.+. .+.....-++|.||++.....-.. -+.+-||+ .....+.|-+..+.+
T Consensus 428 ~~r---~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~ 486 (553)
T PLN02708 428 HGR---TDPAQSTGFVFQNCLINGTEEYMKLYRSNPKVHKNFLGRPWKEYSRTVFIGCNLEA 486 (553)
T ss_pred CCC---CCCCCCceEEEEccEEecCCcccccccccccccceeeecCCCCcceEEEEecccCC
Confidence 211 122334589999999987542110 11221222 455678888887765
No 100
>PLN02671 pectinesterase
Probab=76.65 E-value=46 Score=32.66 Aligned_cols=60 Identities=8% Similarity=0.026 Sum_probs=37.6
Q ss_pred EeeeCcEEEeeeEEEcCCc--------eeEE-EeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 160 FIQCNNVHINEIYVERSPQ--------VHIV-VDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 160 ~~~~~nv~I~~i~i~~~~~--------~~i~-~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
....+++..+|++|+|... -.+- ....+.+.+.+|++....+. +-.. ..+-..++|.|..
T Consensus 150 ~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDT-----Ly~~-~gR~yf~~CyIeG 218 (359)
T PLN02671 150 TIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDT-----LLDE-TGSHYFYQCYIQG 218 (359)
T ss_pred EEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccc-----cEeC-CCcEEEEecEEEE
Confidence 3445899999999998731 1222 23567889999999885442 2111 2345667777665
No 101
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=75.99 E-value=17 Score=34.68 Aligned_cols=99 Identities=7% Similarity=0.076 Sum_probs=53.8
Q ss_pred eccccEEEEeEEEeCCCCCCCCc--eEeecCcccEEEEeeEEEE-------------EEeEEEcCCceeEEcccCCCCCc
Q 047738 184 DYSQDVHFKSLIIDSPETSPNTD--GIHIARSHDVSVHTSIIAA-------------VTYVNCGPGHGISIGSLGKNGEE 248 (391)
Q Consensus 184 ~~~~~v~i~n~~I~~~~~~~~~D--Gi~~~~s~nv~I~n~~i~~-------------i~n~~~~~g~gi~igs~~~~~~~ 248 (391)
...+++.++|++|.|........ ++.+ .++++.+.+|.|.. +++|.+.+...+-+|.-
T Consensus 84 v~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~~~r~y~~~c~IeG~vDFIfG~~------ 156 (298)
T PF01095_consen 84 VNADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQDTLYANGGRQYFKNCYIEGNVDFIFGNG------ 156 (298)
T ss_dssp E-STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT-EEE-SSEEEEES-EEEESEEEEEESS------
T ss_pred ccccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccceeeeccceeEEEeeEEEecCcEEECCe------
Confidence 35688999999999853211223 3443 45789999999987 66777766666666541
Q ss_pred CcEEEEEEEeeEEeCCC----eEEEEEEeC-CCCceEEEEEEEEEEEccC
Q 047738 249 VKVENITVRHVNFCKTT----NGARIKTWQ-AGKGQVQHVEFSYMNFTEV 293 (391)
Q Consensus 249 ~~~~ni~i~N~~~~~~~----~gi~i~~~~-~~~g~v~nV~~~ni~i~~~ 293 (391)
...|+||++.... ....|.... .....-....|.||++...
T Consensus 157 ----~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 157 ----TAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp ----EEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEES
T ss_pred ----eEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecC
Confidence 4567777776532 123443321 1122345678888888754
No 102
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=75.64 E-value=38 Score=35.18 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=19.5
Q ss_pred eCcEEEeeeEEEcCCc----eeEEE-eccccEEEEeEEEeCC
Q 047738 163 CNNVHINEIYVERSPQ----VHIVV-DYSQDVHFKSLIIDSP 199 (391)
Q Consensus 163 ~~nv~I~~i~i~~~~~----~~i~~-~~~~~v~i~n~~I~~~ 199 (391)
.+++..+|++|+|... ..+-+ ..++...+.+|+|...
T Consensus 311 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~ 352 (539)
T PLN02995 311 GLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGY 352 (539)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecc
Confidence 4566666666666532 11211 2445566666666654
No 103
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=74.76 E-value=49 Score=33.18 Aligned_cols=44 Identities=11% Similarity=0.214 Sum_probs=30.4
Q ss_pred EEeccccEEEEeEEEeCCCC----CCCCceEeec-CcccEEEEeeEEEE
Q 047738 182 VVDYSQDVHFKSLIIDSPET----SPNTDGIHIA-RSHDVSVHTSIIAA 225 (391)
Q Consensus 182 ~~~~~~~v~i~n~~I~~~~~----~~~~DGi~~~-~s~nv~I~n~~i~~ 225 (391)
.....+++..+|++|.|... ......+-+. ..+.+.+++|.|..
T Consensus 201 v~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG 249 (422)
T PRK10531 201 FWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILG 249 (422)
T ss_pred EEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEec
Confidence 34567889999999999642 1123444443 46889999998876
No 104
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=73.56 E-value=1.2e+02 Score=31.47 Aligned_cols=100 Identities=5% Similarity=0.035 Sum_probs=67.7
Q ss_pred EeccccEEEEeEEEeCCCCCCCCceEeec-CcccEEEEeeEEEE-------------EEeEEEcCCceeEEcccCCCCCc
Q 047738 183 VDYSQDVHFKSLIIDSPETSPNTDGIHIA-RSHDVSVHTSIIAA-------------VTYVNCGPGHGISIGSLGKNGEE 248 (391)
Q Consensus 183 ~~~~~~v~i~n~~I~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~-------------i~n~~~~~g~gi~igs~~~~~~~ 248 (391)
....++...+|++|.|........++.+. .++...+.+|.|.. .++|.+.+.-.+-+|.
T Consensus 289 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~------- 361 (520)
T PLN02201 289 AVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTMRQFYRECRITGTVDFIFGD------- 361 (520)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCCCEEEEeeEEeecccEEecC-------
Confidence 34567899999999996433345566654 46899999999987 7788888776766655
Q ss_pred CcEEEEEEEeeEEeCCC----eEEEEEEeCCC--CceEEEEEEEEEEEccC
Q 047738 249 VKVENITVRHVNFCKTT----NGARIKTWQAG--KGQVQHVEFSYMNFTEV 293 (391)
Q Consensus 249 ~~~~ni~i~N~~~~~~~----~gi~i~~~~~~--~g~v~nV~~~ni~i~~~ 293 (391)
-..+|+||++.... ..-.|... ++ ...-....|.||++...
T Consensus 362 ---a~avf~~C~i~~~~~~~~~~~~iTAq-~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 362 ---ATAVFQNCQILAKKGLPNQKNTITAQ-GRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred ---ceEEEEccEEEEecCCCCCCceEEec-CCCCCCCCcEEEEEeeEEecC
Confidence 25788888886531 11234332 22 23445788999999763
No 105
>PLN02197 pectinesterase
Probab=73.06 E-value=50 Score=34.65 Aligned_cols=99 Identities=5% Similarity=0.026 Sum_probs=64.7
Q ss_pred eccccEEEEeEEEeCCCCCCCCceEeec-CcccEEEEeeEEEE-------------EEeEEEcCCceeEEcccCCCCCcC
Q 047738 184 DYSQDVHFKSLIIDSPETSPNTDGIHIA-RSHDVSVHTSIIAA-------------VTYVNCGPGHGISIGSLGKNGEEV 249 (391)
Q Consensus 184 ~~~~~v~i~n~~I~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~-------------i~n~~~~~g~gi~igs~~~~~~~~ 249 (391)
...++...+|++|.|........++-+. .++...+.+|.|.. .++|.+.+.-.+-+|.
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIFG~-------- 432 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGK-------- 432 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCCCEEEEeeEEEecccccccc--------
Confidence 3467788899999986432344566654 57899999999988 6777777666655554
Q ss_pred cEEEEEEEeeEEeCCC--eE--EEEEEeCCC---CceEEEEEEEEEEEccC
Q 047738 250 KVENITVRHVNFCKTT--NG--ARIKTWQAG---KGQVQHVEFSYMNFTEV 293 (391)
Q Consensus 250 ~~~ni~i~N~~~~~~~--~g--i~i~~~~~~---~g~v~nV~~~ni~i~~~ 293 (391)
-..+|+||++.-.. .| -.|.. .++ ...-..+.|.||++...
T Consensus 433 --a~avfq~C~i~~r~~~~~~~~~iTA-qgr~~~~~~~tG~vf~~C~it~~ 480 (588)
T PLN02197 433 --SATVIQNSLIVVRKGSKGQYNTVTA-DGNEKGLAMKIGIVLQNCRIVPD 480 (588)
T ss_pred --eeeeeecCEEEEecCCCCCceeEEC-CCCCCCCCCCcEEEEEccEEecC
Confidence 24788888875421 11 23332 332 13345788999999864
No 106
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=71.59 E-value=76 Score=33.45 Aligned_cols=99 Identities=7% Similarity=0.015 Sum_probs=67.4
Q ss_pred eccccEEEEeEEEeCCCCCCCCceEeec-CcccEEEEeeEEEE-------------EEeEEEcCCceeEEcccCCCCCcC
Q 047738 184 DYSQDVHFKSLIIDSPETSPNTDGIHIA-RSHDVSVHTSIIAA-------------VTYVNCGPGHGISIGSLGKNGEEV 249 (391)
Q Consensus 184 ~~~~~v~i~n~~I~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~-------------i~n~~~~~g~gi~igs~~~~~~~~ 249 (391)
...++...+|++|.|.........+-+. .++...+.+|.|.. .++|.+.+.-.+-+|.
T Consensus 369 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~-------- 440 (596)
T PLN02745 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTHRQFYRSCVITGTIDFIFGD-------- 440 (596)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCCCcEEEEeeEEEeeccEEecc--------
Confidence 4668899999999996432234555554 56899999999998 7888888766666655
Q ss_pred cEEEEEEEeeEEeCCC----eEEEEEEeCCC--CceEEEEEEEEEEEccC
Q 047738 250 KVENITVRHVNFCKTT----NGARIKTWQAG--KGQVQHVEFSYMNFTEV 293 (391)
Q Consensus 250 ~~~ni~i~N~~~~~~~----~gi~i~~~~~~--~g~v~nV~~~ni~i~~~ 293 (391)
-..+|+||++.-.. ..-.|.. .++ ...-..+.|.||++...
T Consensus 441 --a~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 441 --AAAIFQNCLIFVRKPLPNQQNTVTA-QGRVDKFETTGIVLQNCRIAPD 487 (596)
T ss_pred --eeEEEEecEEEEecCCCCCCceEEe-cCCCCCCCCceEEEEeeEEecC
Confidence 36788888886531 1123433 222 23345788999999864
No 107
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=71.02 E-value=1.4e+02 Score=31.09 Aligned_cols=100 Identities=5% Similarity=-0.001 Sum_probs=67.6
Q ss_pred EeccccEEEEeEEEeCCCCCCCCceEeec-CcccEEEEeeEEEE-------------EEeEEEcCCceeEEcccCCCCCc
Q 047738 183 VDYSQDVHFKSLIIDSPETSPNTDGIHIA-RSHDVSVHTSIIAA-------------VTYVNCGPGHGISIGSLGKNGEE 248 (391)
Q Consensus 183 ~~~~~~v~i~n~~I~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~-------------i~n~~~~~g~gi~igs~~~~~~~ 248 (391)
....++...+|++|.|........++-+. .++...+.+|.|.. .++|.+.+.-.+-+|.-
T Consensus 301 ~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~IeGtVDFIFG~a------ 374 (530)
T PLN02933 301 GVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSAKQFYRECDIYGTIDFIFGNA------ 374 (530)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCCceEEEeeEEecccceeccCc------
Confidence 34567899999999986433344566665 57899999999998 78888887777666652
Q ss_pred CcEEEEEEEeeEEeCCC----eEEEEEEeCCC--CceEEEEEEEEEEEccC
Q 047738 249 VKVENITVRHVNFCKTT----NGARIKTWQAG--KGQVQHVEFSYMNFTEV 293 (391)
Q Consensus 249 ~~~~ni~i~N~~~~~~~----~gi~i~~~~~~--~g~v~nV~~~ni~i~~~ 293 (391)
..+|+||.+.-.. ....|.. .++ ...-..+.|.||++...
T Consensus 375 ----~avFq~C~i~~~~~~~~~~~~iTA-q~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 375 ----AVVFQNCSLYARKPNPNHKIAFTA-QSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred ----eEEEeccEEEEeccCCCCceEEEe-cCCCCCCCCceEEEEeeEEecC
Confidence 5677888875432 1223332 222 23345788999999764
No 108
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=70.25 E-value=1.5e+02 Score=31.26 Aligned_cols=100 Identities=6% Similarity=0.061 Sum_probs=67.6
Q ss_pred EeccccEEEEeEEEeCCCCCCCCceEeec-CcccEEEEeeEEEE-------------EEeEEEcCCceeEEcccCCCCCc
Q 047738 183 VDYSQDVHFKSLIIDSPETSPNTDGIHIA-RSHDVSVHTSIIAA-------------VTYVNCGPGHGISIGSLGKNGEE 248 (391)
Q Consensus 183 ~~~~~~v~i~n~~I~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~-------------i~n~~~~~g~gi~igs~~~~~~~ 248 (391)
....++...+|++|.|........++-+. .+++..+.||.|.. .++|.+.+.-.+-+|.
T Consensus 356 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~------- 428 (587)
T PLN02484 356 AATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGN------- 428 (587)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEeccceeccc-------
Confidence 34667899999999986433344566654 56899999999987 7888887766666655
Q ss_pred CcEEEEEEEeeEEeCCC----eEEEEEEeCCC--CceEEEEEEEEEEEccC
Q 047738 249 VKVENITVRHVNFCKTT----NGARIKTWQAG--KGQVQHVEFSYMNFTEV 293 (391)
Q Consensus 249 ~~~~ni~i~N~~~~~~~----~gi~i~~~~~~--~g~v~nV~~~ni~i~~~ 293 (391)
-..+|+||++.-.. ..-.|.. +++ ...-..+.|.||++...
T Consensus 429 ---a~avfq~C~i~~~~~~~~~~~~ITA-q~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 429 ---AAVVLQNCSIYARKPMAQQKNTITA-QNRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred ---ceeEEeccEEEEecCCCCCceEEEe-cCCCCCCCCcEEEEEeeEEecC
Confidence 26778888886521 1233432 222 23445788999999753
No 109
>PLN02916 pectinesterase family protein
Probab=69.57 E-value=1.4e+02 Score=30.72 Aligned_cols=215 Identities=11% Similarity=0.112 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHhhc---CCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEce---EEe-cCCCCCCCCCCCcccEEE
Q 047738 44 DSLAYAKAWNDACKA---NAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSG---TIK-APDGPSAWTSEIGRWIAF 116 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~---~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g---~l~-~~~~~~~~~~~~~~~i~~ 116 (391)
|-..||+||+++.+. ....-+|+|.+| +|+-. +.++- .|. +++|+.+| ++. +... . ..+...+
T Consensus 198 ~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~G-vY~E~-V~I~~-~k~-~i~l~G~g~~~TiIt~~~~--~-~~g~~T~--- 267 (502)
T PLN02916 198 THRTINQALAALSRMGKSRTNRVIIYVKAG-VYNEK-VEIDR-HMK-NVMFVGDGMDKTIITNNRN--V-PDGSTTY--- 267 (502)
T ss_pred CccCHHHHHHhcccccCCCCceEEEEEeCc-eeeEE-EEecC-CCc-eEEEEecCCCCcEEEeCCc--c-CCCCcce---
Confidence 466799999854321 112358999999 99743 33421 134 88888875 322 2111 0 1111111
Q ss_pred EeeeceEEeeeeEEeCCCchhcccccCCCCCCCCCCCCCeeEEEe-eeCcEEEeeeEEEcCCceeEEEeccccEEEEeEE
Q 047738 117 GNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFI-QCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLI 195 (391)
Q Consensus 117 ~~~~nv~I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~-~~~nv~I~~i~i~~~~~~~i~~~~~~~v~i~n~~ 195 (391)
+.--+.+.|.|.+-- +-.+...+ .+. ...++.+. ..+...+.++.|.... +.+.. +..+--+++|.
T Consensus 268 -~SAT~~v~~~~F~A~-nitf~Nta---g~~------~~QAVALrv~~D~a~fy~C~f~G~Q-DTLy~-~~~Rqyy~~C~ 334 (502)
T PLN02916 268 -SSATFGVSGDGFWAR-DITFENTA---GPH------KHQAVALRVSSDLSVFYRCSFKGYQ-DTLFV-HSLRQFYRDCH 334 (502)
T ss_pred -eeEEEEEECCCEEEE-eeEEEeCC---CCC------CCceEEEEEcCCcEEEEeeeEeccC-ceeEe-CCCCEEEEecE
Confidence 112233333221100 00000000 000 11222222 3467777888876543 33332 34457789999
Q ss_pred EeCCCCCCCCceEeecCcccEEEEeeEEEEEEeEEEcCCce-eEEcccCCCCCcCcEEEEEEEeeEEeCCCeEE----EE
Q 047738 196 IDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHG-ISIGSLGKNGEEVKVENITVRHVNFCKTTNGA----RI 270 (391)
Q Consensus 196 I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~i~n~~~~~g~g-i~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi----~i 270 (391)
|...-| - |.+.-.+.++||.|...... ....| |.-.+. .+...-.-+.|.||++....... ..
T Consensus 335 I~GtVD-----F--IFG~a~avFq~C~I~~~~~~--~~~~g~ITAq~r---~~~~~~tGfvf~~C~it~~~~~~~~~g~~ 402 (502)
T PLN02916 335 IYGTID-----F--IFGDAAVVFQNCDIFVRRPM--DHQGNMITAQGR---DDPHENTGISIQHSRVRASPEFEAVKGRF 402 (502)
T ss_pred Eecccc-----e--eccCceEEEecCEEEEecCC--CCCcceEEecCC---CCCCCCcEEEEEeeEEecCcccccccccc
Confidence 988432 1 23556788888888763211 11122 221111 01223457889999998753211 01
Q ss_pred EEeCCCC-ceEEEEEEEEEEEccC
Q 047738 271 KTWQAGK-GQVQHVEFSYMNFTEV 293 (391)
Q Consensus 271 ~~~~~~~-g~v~nV~~~ni~i~~~ 293 (391)
++.-||+ .....+.|.+..|.+.
T Consensus 403 ~~yLGRPW~~ysrvVf~~t~~~~~ 426 (502)
T PLN02916 403 KSFLGRPWKKYSRTVFLKTDLDGL 426 (502)
T ss_pred ceEeecCCCCCceEEEEecccCCe
Confidence 1222222 4456788888777653
No 110
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=68.49 E-value=84 Score=27.70 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=25.8
Q ss_pred cccEEEEeeEEEEE-EeEEEcCCceeEEcccCCCCCcCcEEEEEEEeeEEeCCCe
Q 047738 213 SHDVSVHTSIIAAV-TYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTN 266 (391)
Q Consensus 213 s~nv~I~n~~i~~i-~n~~~~~g~gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~ 266 (391)
.++|.|+++.|... .+-.....-||.. .+.+|-.|||+.|.+...
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGIv~---------sGF~ntlIENNVfDG~y~ 78 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGIVT---------SGFYNTLIENNVFDGVYH 78 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeEEe---------ccccccEEEeeeeccccc
Confidence 35888888777750 0000111123332 356788888988888754
No 111
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=65.67 E-value=1.4e+02 Score=30.87 Aligned_cols=99 Identities=8% Similarity=0.021 Sum_probs=58.5
Q ss_pred eccccEEEEeEEEeCCCCCCCCceEeec-CcccEEEEeeEEEE-------------EEeEEEcCCceeEEcccCCCCCcC
Q 047738 184 DYSQDVHFKSLIIDSPETSPNTDGIHIA-RSHDVSVHTSIIAA-------------VTYVNCGPGHGISIGSLGKNGEEV 249 (391)
Q Consensus 184 ~~~~~v~i~n~~I~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~-------------i~n~~~~~g~gi~igs~~~~~~~~ 249 (391)
...++...+|++|.|........++-+. .+++..+.+|.|.. .++|.+.+.-.+-+|.-
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~rqyy~~C~I~G~vDFIFG~a------- 339 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAALRQFYRECDIYGTIDFIFGNA------- 339 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCCcEEEEeeEEEeccceEeccc-------
Confidence 3556788888888875432233455543 46788888888877 66777776556555542
Q ss_pred cEEEEEEEeeEEeCCCe--E--EEEEEeCCC--CceEEEEEEEEEEEccC
Q 047738 250 KVENITVRHVNFCKTTN--G--ARIKTWQAG--KGQVQHVEFSYMNFTEV 293 (391)
Q Consensus 250 ~~~ni~i~N~~~~~~~~--g--i~i~~~~~~--~g~v~nV~~~ni~i~~~ 293 (391)
..+|+||++..... + -.|.. .++ ...-..+.|.||++...
T Consensus 340 ---~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~G~vf~~c~i~~~ 385 (497)
T PLN02698 340 ---AAVFQNCYLFLRRPHGKSYNVILA-NGRSDPGQNTGFSLQSCRIRTS 385 (497)
T ss_pred ---ceeecccEEEEecCCCCCceEEEe-cCCCCCCCCceEEEEeeEEecC
Confidence 45777777754211 1 12322 121 22335677888888754
No 112
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=63.52 E-value=1.1e+02 Score=31.79 Aligned_cols=100 Identities=7% Similarity=0.037 Sum_probs=67.8
Q ss_pred EEeccccEEEEeEEEeCCCCCCCCceEeec-CcccEEEEeeEEEE-------------EEeEEEcCCceeEEcccCCCCC
Q 047738 182 VVDYSQDVHFKSLIIDSPETSPNTDGIHIA-RSHDVSVHTSIIAA-------------VTYVNCGPGHGISIGSLGKNGE 247 (391)
Q Consensus 182 ~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~-------------i~n~~~~~g~gi~igs~~~~~~ 247 (391)
.....++...+|++|.|.........+-+. .++++.+.+|.|.. .++|.+.+.-.+-+|.
T Consensus 314 ~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~rqyy~~C~I~GtVDFIFG~------ 387 (537)
T PLN02506 314 VAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEIYGTIDFIFGN------ 387 (537)
T ss_pred EEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCCceEEEeeEEecccceEccC------
Confidence 345678899999999996433344555554 56899999999987 7888888776766655
Q ss_pred cCcEEEEEEEeeEEeCCCe----EEEEEEeCCC--CceEEEEEEEEEEEcc
Q 047738 248 EVKVENITVRHVNFCKTTN----GARIKTWQAG--KGQVQHVEFSYMNFTE 292 (391)
Q Consensus 248 ~~~~~ni~i~N~~~~~~~~----gi~i~~~~~~--~g~v~nV~~~ni~i~~ 292 (391)
-..+|+||++..... .-.|.. .++ ...-..+.|.||++..
T Consensus 388 ----a~avfq~C~i~~r~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~ 433 (537)
T PLN02506 388 ----GAAVLQNCKIYTRVPLPLQKVTITA-QGRKSPHQSTGFSIQDSYVLA 433 (537)
T ss_pred ----ceeEEeccEEEEccCCCCCCceEEc-cCCCCCCCCcEEEEEcCEEcc
Confidence 257888888865321 233433 222 1233578899999975
No 113
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=63.17 E-value=1.1e+02 Score=27.04 Aligned_cols=78 Identities=18% Similarity=0.194 Sum_probs=45.6
Q ss_pred cEEEEeeEEEEEEeEEEcCCceeEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCCC--CceEEEEEEEEEEEcc
Q 047738 215 DVSVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAG--KGQVQHVEFSYMNFTE 292 (391)
Q Consensus 215 nv~I~n~~i~~i~n~~~~~g~gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~--~g~v~nV~~~ni~i~~ 292 (391)
+|.|.|+.|.+ ..+-||=+-..+...+....+||+|.++.|..+..--.+.- -++ .....|.++||..|++
T Consensus 3 dIEIYnN~I~~------T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~w-vGGIv~sGF~ntlIENNVfDG 75 (198)
T PF08480_consen 3 DIEIYNNTIYN------TYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDW-VGGIVTSGFYNTLIENNVFDG 75 (198)
T ss_pred ceEEecceeec------ccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCce-eeeEEeccccccEEEeeeecc
Confidence 56777766665 44555432222122245667899999999999754211111 110 1244678999999998
Q ss_pred CCceEEE
Q 047738 293 VQNPIII 299 (391)
Q Consensus 293 ~~~~i~i 299 (391)
+..+-.+
T Consensus 76 ~y~aai~ 82 (198)
T PF08480_consen 76 VYHAAIA 82 (198)
T ss_pred cccceEE
Confidence 7654333
No 114
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=61.44 E-value=1.3e+02 Score=31.51 Aligned_cols=100 Identities=7% Similarity=0.068 Sum_probs=67.8
Q ss_pred eccccEEEEeEEEeCCCCCCCCceEeec-CcccEEEEeeEEEE-------------EEeEEEcCCceeEEcccCCCCCcC
Q 047738 184 DYSQDVHFKSLIIDSPETSPNTDGIHIA-RSHDVSVHTSIIAA-------------VTYVNCGPGHGISIGSLGKNGEEV 249 (391)
Q Consensus 184 ~~~~~v~i~n~~I~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~-------------i~n~~~~~g~gi~igs~~~~~~~~ 249 (391)
...++...+|++|.|........++-+. .++...+.+|.|.. .++|.+.+.-.+-+|.
T Consensus 344 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~-------- 415 (572)
T PLN02990 344 INGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFIFGD-------- 415 (572)
T ss_pred EEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceEccC--------
Confidence 3567899999999996433345566664 56899999999987 7888888776766655
Q ss_pred cEEEEEEEeeEEeCCCe----EEEEEEeCCC--CceEEEEEEEEEEEccCC
Q 047738 250 KVENITVRHVNFCKTTN----GARIKTWQAG--KGQVQHVEFSYMNFTEVQ 294 (391)
Q Consensus 250 ~~~ni~i~N~~~~~~~~----gi~i~~~~~~--~g~v~nV~~~ni~i~~~~ 294 (391)
-..+|+||++.-... .-.|.. +++ ...-..+.|.||++....
T Consensus 416 --a~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 416 --AKVVLQNCNIVVRKPMKGQSCMITA-QGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred --ceEEEEccEEEEecCCCCCceEEEe-CCCCCCCCCceEEEEeeEEecCc
Confidence 257788888864211 233432 222 123457889999998643
No 115
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=59.69 E-value=2e+02 Score=28.98 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEc
Q 047738 47 AYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLS 94 (391)
Q Consensus 47 aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~ 94 (391)
-|.+|+......+ -...+++-+| +|....|.+. | +++|..+
T Consensus 34 ~iEea~~~l~e~~-~e~LIFlH~G-~~e~~~i~I~----s-dvqiiGA 74 (625)
T KOG1777|consen 34 HIEEALRFLDEND-EEKLIFLHEG-THETETIRIT----S-DVQIIGA 74 (625)
T ss_pred hHHHHhhhccccc-ccceEEEEec-cccceEEEEc----C-CeeEecc
Confidence 3555554322222 4788999999 9998888887 6 7777543
No 116
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=58.93 E-value=37 Score=33.77 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=19.0
Q ss_pred EEEEEEeeEEeCCCeEEEEEEeCCCCceEEEEEEEEEE
Q 047738 252 ENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMN 289 (391)
Q Consensus 252 ~ni~i~N~~~~~~~~gi~i~~~~~~~g~v~nV~~~ni~ 289 (391)
.|=.|+|+...++ .|+.+. +++..++|+||+.+++.
T Consensus 311 tnHiidNi~~~~~-lGVG~~-~DG~~~yvsni~~~d~~ 346 (549)
T PF09251_consen 311 TNHIIDNILVRGS-LGVGIG-MDGKGGYVSNITVQDCA 346 (549)
T ss_dssp ---EEEEEEEES--SSESCE-EECCS-EEEEEEEES-S
T ss_pred hhhhhhhhheecc-ceeeee-ecCCCceEeeEEeeccc
Confidence 4456677666665 444443 34556788888877754
No 117
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=54.82 E-value=13 Score=20.24 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=13.8
Q ss_pred EEEEEeeEEeCCCe-EEEEEE
Q 047738 253 NITVRHVNFCKTTN-GARIKT 272 (391)
Q Consensus 253 ni~i~N~~~~~~~~-gi~i~~ 272 (391)
+++|++|++.+... |+.+..
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~~ 23 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIGG 23 (26)
T ss_pred CEEEECCEEEeCCCCcEEEec
Confidence 56777777777666 776653
No 118
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=53.31 E-value=1.8e+02 Score=26.42 Aligned_cols=136 Identities=12% Similarity=0.106 Sum_probs=75.2
Q ss_pred eeEEEeeeCcEEEeeeEEEcCCceeEEEeccccEEEEeEEEeCCCCCCCCceEeecCcc-cEEEEeeEEEEEEe-EEEcC
Q 047738 156 TAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSH-DVSVHTSIIAAVTY-VNCGP 233 (391)
Q Consensus 156 ~~i~~~~~~nv~I~~i~i~~~~~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~-nv~I~n~~i~~i~n-~~~~~ 233 (391)
.+|.+. +..+|+|+.|-.+...+||-.. +.+|+|+...+- ..|++.+.+.. .++|.++-.+...+ +...+
T Consensus 55 ~vF~le--~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~N 126 (215)
T PF03211_consen 55 PVFILE--DGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHN 126 (215)
T ss_dssp -SEEEE--TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-
T ss_pred eEEEec--CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEec
Confidence 345555 5789999999777778899887 789999998874 35788887665 77777766665222 11122
Q ss_pred CceeEEcccCCCCCcCcEEEEEEEeeEEeCCCeEEEEEEeCC---CCceEEEEEEEEEEEccCCceEEEEeeeCCCCCcC
Q 047738 234 GHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQA---GKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVC 310 (391)
Q Consensus 234 g~gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~---~~g~v~nV~~~ni~i~~~~~~i~i~~~~~~~~~~~ 310 (391)
+.| .+.|+|-+.. +.|-...+-.. ..+.=|+|.+++........-+-|...|++
T Consensus 127 g~G----------------tv~I~nF~a~--d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD----- 183 (215)
T PF03211_consen 127 GGG----------------TVTIKNFYAE--DFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGD----- 183 (215)
T ss_dssp SSE----------------EEEEEEEEEE--EEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTT-----
T ss_pred Cce----------------eEEEEeEEEc--CCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCC-----
Confidence 222 3444453332 23333333111 013446677776655433333445554443
Q ss_pred CCCCcceEEEEEEEEeE
Q 047738 311 AKTSTGVHISDVRYLNA 327 (391)
Q Consensus 311 ~~~~~~~~i~~Itf~ni 327 (391)
...|+++..+..
T Consensus 184 -----~ati~~~~~~~~ 195 (215)
T PF03211_consen 184 -----TATISNSCIKGK 195 (215)
T ss_dssp -----TEEEEEEEEEEE
T ss_pred -----eEEEEEEEecCC
Confidence 356777777754
No 119
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=42.50 E-value=4e+02 Score=27.49 Aligned_cols=100 Identities=7% Similarity=0.005 Sum_probs=68.6
Q ss_pred eccccEEEEeEEEeCCCCCCCCceEeec-CcccEEEEeeEEEE-------------EEeEEEcCCceeEEcccCCCCCcC
Q 047738 184 DYSQDVHFKSLIIDSPETSPNTDGIHIA-RSHDVSVHTSIIAA-------------VTYVNCGPGHGISIGSLGKNGEEV 249 (391)
Q Consensus 184 ~~~~~v~i~n~~I~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~-------------i~n~~~~~g~gi~igs~~~~~~~~ 249 (391)
...++...+|++|.|........++.+. .++...+.+|.|.. .++|.+.+.-.+-+|.
T Consensus 281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~-------- 352 (509)
T PLN02488 281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICGN-------- 352 (509)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEecc--------
Confidence 3567788999999986433345666665 57899999999988 7788888776766655
Q ss_pred cEEEEEEEeeEEeCCCe----EEEEEEeCCC--CceEEEEEEEEEEEccCC
Q 047738 250 KVENITVRHVNFCKTTN----GARIKTWQAG--KGQVQHVEFSYMNFTEVQ 294 (391)
Q Consensus 250 ~~~ni~i~N~~~~~~~~----gi~i~~~~~~--~g~v~nV~~~ni~i~~~~ 294 (391)
-.++|+||++..... .-.|.. +++ ...-..+.|.||++....
T Consensus 353 --a~avFq~C~I~sr~~~~~~~~~ITA-q~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 353 --AAAVFQFCQIVARQPMMGQSNVITA-QSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred --eEEEEEccEEEEecCCCCCCEEEEe-CCCCCCCCCcEEEEEeeEEecCC
Confidence 367888888875321 124443 222 233457899999998643
No 120
>PF15240 Pro-rich: Proline-rich
Probab=39.92 E-value=15 Score=32.04 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=13.8
Q ss_pred HHHHHHHH-hhhccccccCCCC
Q 047738 6 MCILILLS-TLATHINVNADDQ 26 (391)
Q Consensus 6 ~~~~~~~~-~l~~~~~~~~~~~ 26 (391)
||||||.+ +|++++|+..+..
T Consensus 1 MLlVLLSvALLALSSAQ~~dEd 22 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTDED 22 (179)
T ss_pred ChhHHHHHHHHHhhhccccccc
Confidence 55555544 6888888877653
No 121
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=36.05 E-value=3.3e+02 Score=24.65 Aligned_cols=132 Identities=13% Similarity=0.223 Sum_probs=62.4
Q ss_pred ccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEEEEeEEEcCCceeEEcccCCCCCcCcEEEEEEEeeEEeCCCe
Q 047738 187 QDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTN 266 (391)
Q Consensus 187 ~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~i~n~~~~~g~gi~igs~~~~~~~~~~~ni~i~N~~~~~~~~ 266 (391)
+..+++|+.|-. +..||||..+ +-+|+|...+. -.-+++.|...+ + .++|.+.-..+..+
T Consensus 61 ~GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwed------VcEDA~T~kg~~-----~---~~~I~ggga~~A~D 120 (215)
T PF03211_consen 61 DGATLKNVIIGA----NQADGIHCKG--SCTLENVWWED------VCEDAATFKGDG-----G---TVTIIGGGARNASD 120 (215)
T ss_dssp TTEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-------SSESEEEESSE-----E---EEEEESTEEEEEEE
T ss_pred CCCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecc------cceeeeEEcCCC-----c---eEEEeCCcccCCCc
Confidence 568999999965 3468999876 45555444433 134678886632 1 44444443332211
Q ss_pred EEEEEEeCCCCceEEEEEEEEEEEccCCceEEEEeeeCCCCCcCCCCCcceEEEEEEEEeEEEeecCCeeEEE--ecCCC
Q 047738 267 GARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINL--DCSNN 344 (391)
Q Consensus 267 gi~i~~~~~~~g~v~nV~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~~Itf~ni~~~~~~~~~i~i--~~~~~ 344 (391)
.+-.+.++ | .++++|...++ .+-.+.+ +. .|... ...=+.+.++++..... ...+-+ ...+.
T Consensus 121 --KV~Q~Ng~-G---tv~I~nF~a~d--~GKl~RS--CG---nC~~~--~~~~r~v~v~~~~~~~~-~~~~giN~N~gD~ 184 (215)
T PF03211_consen 121 --KVFQHNGG-G---TVTIKNFYAED--FGKLYRS--CG---NCSNN--GGPRRHVVVNNVVAGPG-NSLVGINRNYGDT 184 (215)
T ss_dssp --EEEEE-SS-E---EEEEEEEEEEE--EEEEEEE---T---TETS------EEEEEEEEEEEEEE-EEEEEEEEGGTTT
T ss_pred --cEEEecCc-e---eEEEEeEEEcC--CCEEEEe--CC---CCCCC--CCcceEEEEeeEEecCC-cEEEEEECCCCCe
Confidence 12222221 2 45666655553 2323332 11 13221 01225555555544332 233333 33466
Q ss_pred CceecEEEEe
Q 047738 345 VACTDIKLEN 354 (391)
Q Consensus 345 ~~i~~i~~~n 354 (391)
..+++++++.
T Consensus 185 ati~~~~~~~ 194 (215)
T PF03211_consen 185 ATISNSCIKG 194 (215)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEecC
Confidence 6788877776
No 122
>PF08830 DUF1806: Protein of unknown function (DUF1806); InterPro: IPR014934 This entry consists of bacterial uncharacterised proteins. The structure of one of the proteins has been solved and it adopts a beta barrel-like structure. ; PDB: 1NJH_A.
Probab=31.32 E-value=1.1e+02 Score=24.50 Aligned_cols=72 Identities=15% Similarity=0.264 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHhhcCCCCCEEEec--CCCeEEEe--------eeeecCCCCCcceEEEEc-eEEecCCCCCCCC---CC
Q 047738 44 DSLAYAKAWNDACKANAQTPTMIIP--KGKTFLVH--------PITFSGPCKSSNISIQLS-GTIKAPDGPSAWT---SE 109 (391)
Q Consensus 44 dt~aiq~Ai~~a~~~~~~g~~v~iP--~G~~y~~~--------~i~l~~~~~s~~~~l~l~-g~l~~~~~~~~~~---~~ 109 (391)
+.+++|++|+.-+.. .--|++. .| -|-.. .-.++ |..|+.+ |.|.+.. .|+ +-
T Consensus 4 ~~~~VQ~~l~~~~~~---~vYlHlETTnG-AYAsH~d~~~~~agafiR------Na~i~ye~g~i~G~g---PyRvGLK~ 70 (114)
T PF08830_consen 4 DKEEVQALLDSFANK---DVYLHLETTNG-AYASHFDESFFNAGAFIR------NAKIRYEHGKIKGDG---PYRVGLKL 70 (114)
T ss_dssp -HHHHHHHHHHTTTS----EEEEEEEEE-------------EEEEEEE------EEEE-EEEEEEESSS---SEEEEEEE
T ss_pred CHHHHHHHHHHhcCC---ceEEEEeecCc-hhhccccccccChhhEEE------eeEEEEEEeEEEcCC---CeEEEEec
Confidence 467899999875443 2223332 35 44321 12343 7777776 7777522 332 12
Q ss_pred CcccEEEEeeeceEEeeee
Q 047738 110 IGRWIAFGNITGLNINGRG 128 (391)
Q Consensus 110 ~~~~i~~~~~~nv~I~G~G 128 (391)
...|++.+|..+..+...|
T Consensus 71 ~~GWvYaEGLTh~e~d~~~ 89 (114)
T PF08830_consen 71 EIGWVYAEGLTHYEVDEEG 89 (114)
T ss_dssp SSSEEEEEEE-EEEE-TT-
T ss_pred CCCEEEEccceeeEEcCCC
Confidence 4578999998888876544
No 123
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=27.09 E-value=53 Score=29.96 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=32.6
Q ss_pred CceEEEeccCccCCCCchhHH------------HHHHHHHHHhhcCCCCCEEEe--cCCCeEEEe
Q 047738 26 QNTFNVLNYGAVGNGNSDDSL------------AYAKAWNDACKANAQTPTMII--PKGKTFLVH 76 (391)
Q Consensus 26 ~~~~~v~dfGa~~dg~tddt~------------aiq~Ai~~a~~~~~~g~~v~i--P~G~~y~~~ 76 (391)
-..+|++||....-.+.||++ -|-+||+++++.. ...|++ |.|+.|...
T Consensus 33 ~~~~n~Rdf~~dkh~~VDD~pyGGG~GMvmk~epi~~Al~~~~~~~--~~~vi~lsP~G~~f~Q~ 95 (240)
T COG0336 33 LEVVNPRDFATDKHKTVDDTPYGGGAGMVMKPEPLFDALDSVKAAK--KAKVILLSPQGKPFTQA 95 (240)
T ss_pred EEeecHHHhccCcCcccCCccCCCCCccEeccHHHHHHHHHHHhcc--CCeEEEECCCCCccCHH
Confidence 456777888776665566654 5899999776642 345555 889666553
No 124
>PLN02480 Probable pectinesterase
Probab=26.35 E-value=6.2e+02 Score=24.72 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=41.7
Q ss_pred eeEEEeeeCcEEEeeeEEEcCCc---------eeEEE-eccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE
Q 047738 156 TAVSFIQCNNVHINEIYVERSPQ---------VHIVV-DYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA 225 (391)
Q Consensus 156 ~~i~~~~~~nv~I~~i~i~~~~~---------~~i~~-~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 225 (391)
..+.+ ..++++++|++|+|... -.+-+ ..++++.+.||++....|. +-.. ..+-..++|+|..
T Consensus 125 aTvtV-~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDT-----Ly~~-~gR~yf~~C~IeG 197 (343)
T PLN02480 125 ATFTV-EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNT-----LFDY-KGRHYYHSCYIQG 197 (343)
T ss_pred eEEEE-ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccce-----eEeC-CCCEEEEeCEEEe
Confidence 34544 45899999999999831 23333 4678999999999985442 2111 2356667777765
No 125
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=25.13 E-value=2.6e+02 Score=22.73 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=22.0
Q ss_pred CCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCC
Q 047738 61 QTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDG 102 (391)
Q Consensus 61 ~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~ 102 (391)
.+..|+||+|++.++..- .+ . =..|.++|+|.+.++
T Consensus 11 ~g~~V~I~~g~~v~lD~~-~~----~-l~~l~I~G~L~f~~~ 46 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVS-TP----K-LGSLIIGGTLIFDDD 46 (125)
T ss_pred CCCEEEECCCCEEEEcCC-Ch----h-eeEEEEEEEEEEccC
Confidence 489999999944444321 11 0 223444899988664
No 126
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=21.73 E-value=95 Score=24.07 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=19.0
Q ss_pred eccCccC-CCCchhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEE
Q 047738 32 LNYGAVG-NGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLV 75 (391)
Q Consensus 32 ~dfGa~~-dg~tddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~ 75 (391)
.|||..+ +..-..-..|++||..--.. ..+ |..| +|+.
T Consensus 10 ~DFGi~~~~~N~~t~~~F~~aI~~hi~~---~~t--v~~G-tYr~ 48 (92)
T PF11429_consen 10 GDFGITGTNWNKETLEEFEDAIKEHIKN---PDT--VEKG-TYRR 48 (92)
T ss_dssp GGGT------SHHHHHHHHHHHHHHHH----TT---EE---BETT
T ss_pred cccCcccCCCChhhHHHHHHHHHHHhCC---CCe--Eecc-ceec
Confidence 5898877 33333346788898754443 566 4599 9975
No 127
>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC). TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.
Probab=20.13 E-value=4.6e+02 Score=20.97 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=5.4
Q ss_pred EEEEeeeceEEe
Q 047738 114 IAFGNITGLNIN 125 (391)
Q Consensus 114 i~~~~~~nv~I~ 125 (391)
+.+.++++.+|.
T Consensus 23 v~i~~~~~c~i~ 34 (120)
T PF07986_consen 23 VHIDNCKNCTIV 34 (120)
T ss_dssp EEEES-BS-EEE
T ss_pred EEEeCCCCCEEE
Confidence 445556665554
Done!