BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047740
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X7B|A Chain A, Crystal Structure Of The N-Terminal Acetylase Ard1 From
Sulfolobus Solfataricus P2
Length = 168
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 21 VDEIVKMEKKIFPKHESLARSFDEDLKKKNSGLLYIQIHGQVVGYVM--YAWPTSLSASI 78
+D+I+K+ + P++ F E LK+ + VVGY+M W S +
Sbjct: 23 IDQIIKINRLTLPENYPYY-FFVEHLKEYGLAFFVAIVDNSVVGYIMPRIEWGFSNIKQL 81
Query: 79 TKL-------------NYRGQGRGEALLEAAIKKCRTRTVLRKT-LHVDPLRTPAVNLYK 124
L YR +G LLEA++K + + L V PA+ LY+
Sbjct: 82 PSLVRKGHVVSIAVLEEYRRKGIATTLLEASMKSMKNDYNAEEIYLEVRVSNYPAIALYE 141
Query: 125 KFGFQVDTLIQGYYSADRPAYRM 147
K F+ +++GYY+ AY M
Sbjct: 142 KLNFKKVKVLKGYYADGEDAYLM 164
>pdb|1Z4E|A Chain A, Crystal Structure Of Transcriptional Regulator From
Bacillus Halodurans C-125
pdb|1Z4E|B Chain B, Crystal Structure Of Transcriptional Regulator From
Bacillus Halodurans C-125
Length = 153
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 37 SLARSFDEDLKKKNSGLLYIQIHGQVVG--------YVMY--AWPTSLSASITKLNYRGQ 86
S R+F E K KN+ L+ ++VG Y+ Y +W ++ T RGQ
Sbjct: 41 SYVRAFKEIKKDKNNELIVACNGEEIVGMLQVTFTPYLTYQGSWRATIEGVRTHSAARGQ 100
Query: 87 GRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQV 130
G G L+ AI++ + R L D R A+ Y++ GF+
Sbjct: 101 GIGSQLVCWAIERAKERGCHLIQLTTDKQRPDALRFYEQLGFKA 144
>pdb|2CNM|A Chain A, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNM|B Chain B, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNM|C Chain C, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With A Bisubstrate Inhibitor (Cterm-Arg-Arg-Phe-
Tyr-Arg-Ala-N-Alpha-Acetyl-S-Coa).
pdb|2CNS|A Chain A, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNS|B Chain B, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNS|C Chain C, Rimi - Ribosomal S18 N-alpha-protein Acetyltransferase In
Complex With Acetylcoa.
pdb|2CNT|A Chain A, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|B Chain B, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|C Chain C, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea.
pdb|2CNT|D Chain D, Rimi - Ribosomal S18 N-Alpha-Protein Acetyltransferase In
Complex With Coenzymea
Length = 160
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYY 138
+++ +G G LLE I + TR V+ L V A+ LY+ GF T+ + YY
Sbjct: 74 DFQRRGLGRMLLEHLIDELETRGVVTLWLEVRASNAAAIALYESLGFNEATIRRNYY 130
>pdb|3TFY|A Chain A, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|B Chain B, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|C Chain C, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
Length = 169
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 83 YRGQGRGEALLEAAIKKCRTRTVLRKT-LHVDPLRTPAVNLYKKFGFQVDTLIQGYYSAD 141
YR G G +L + C LHV A++ Y+KFGF++ + YY
Sbjct: 83 YRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEIIETKKNYYKRI 142
Query: 142 RPA 144
PA
Sbjct: 143 EPA 145
>pdb|2I79|A Chain A, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|B Chain B, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|C Chain C, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|D Chain D, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|E Chain E, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|F Chain F, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
Length = 172
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 83 YRGQGRGEALLEAAIKKCRTRTVLRK-TLHVDPLRTPAVNLYKKFGFQVDTLIQGYYSAD 141
Y G G LLE AI+ + +LR+ L V AV+LY+K GF +I+G S +
Sbjct: 98 YWNNGLGSLLLEEAIEWAQASGILRRLQLTVQTRNQAAVHLYQKHGF----VIEG--SQE 151
Query: 142 RPAY 145
R AY
Sbjct: 152 RGAY 155
>pdb|2OB0|A Chain A, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|B Chain B, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|C Chain C, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2PSW|A Chain A, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|B Chain B, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|C Chain C, Human Mak3 Homolog In Complex With Coa
Length = 170
Score = 32.7 bits (73), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 83 YRGQGRGEALLEAAIKKCRTRTVLRKT-LHVDPLRTPAVNLYKKFGFQVDTLIQGYYSAD 141
YR G G L + C LHV A++ Y+KFGF++ + YY
Sbjct: 84 YRRLGIGTKXLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEIIETKKNYYKRI 143
Query: 142 RPA 144
PA
Sbjct: 144 EPA 146
>pdb|3F8K|A Chain A, Crystal Structure Of Protein Acetyltransferase (Pat) From
Sulfolobus Solfataricus
Length = 160
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 38 LARSFDEDLKKKNSGLLYI----QIHGQVVGYVMYAWPTSLSASITKLNYRGQGRGEALL 93
L R +ED KK S ++ ++ G+VVG S + + NYR G G L+
Sbjct: 37 LYRITEEDAKKIASNEDHVTFLAEVDGKVVGEASLHKDGEFSLVVHR-NYRTLGIGTLLV 95
Query: 94 EAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQ 129
+ I++ + + + P TP + + +K GF+
Sbjct: 96 KTLIEEAKKSGLSTVKFYTLPENTPXIKIGRKLGFK 131
>pdb|2AE6|A Chain A, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|B Chain B, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|C Chain C, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|D Chain D, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
Length = 166
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 47 KKKNSGLLYIQIHGQ-VVGYVMYAWPTSLSASITKL--------NYRGQGRGEALLEAAI 97
+K +++ I GQ + G++ PTSL+A + +++ QG G +LL
Sbjct: 48 EKXKDETIFVAISGQQLAGFIEVHPPTSLAAHQKQWLLSIGVSPDFQDQGIGGSLLSYIK 107
Query: 98 KKCRTRTVLRKTLHVDPLRTPAVNLYKKFG------FQVDTLIQGYYSAD 141
+ + +L V A+ Y+K G F+ + I G+Y D
Sbjct: 108 DXAEISGIHKLSLRVXATNQEAIRFYEKHGFVQEAHFKEEFYINGHYCDD 157
>pdb|3PP9|A Chain A, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|B Chain B, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|C Chain C, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
Length = 187
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 10/144 (6%)
Query: 19 FVVDEIVKMEKKIFPKHESLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASI 78
+ V+++ EK + ++++ ++E + K N + +H Q++G+++ + A I
Sbjct: 45 YTVEDVPSYEKS-YLQNDNEELVYNEYINKPNQIIYIALLHNQIIGFIVLKKNWNNYAYI 103
Query: 79 TKLN----YRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQV---D 131
+ YR G G+ L+ A + + L A Y+K GF + D
Sbjct: 104 EDITVDKKYRTLGVGKRLIAQAKQWAKEGNXPGIXLETQNNNVAACKFYEKCGFVIGGFD 163
Query: 132 TLI-QGY-YSADRPAYRMYIDFDS 153
L+ +G ++D A Y+ FDS
Sbjct: 164 FLVYKGLNXTSDEVAIYWYLHFDS 187
>pdb|2VI7|A Chain A, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
pdb|2VI7|B Chain B, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
pdb|2VI7|C Chain C, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
Length = 177
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 53 LLYIQIH-GQVVGYV-MYAWPT---SLSASI---TKLNYRGQGRGEALLEAAIKKCRTRT 104
L+ + +H G V+G + P S S SI + ++G+G G LL +
Sbjct: 59 LILVALHQGDVIGSASLEQHPRIRRSHSGSIGMGVAVAWQGKGVGSRLLGELLDIADNWM 118
Query: 105 VLRK---TLHVDPLRTPAVNLYKKFGFQVDTLIQGYYSAD 141
LR+ T++ D PA+ LY+KFGF+ + ++ Y D
Sbjct: 119 NLRRVELTVYTD--NAPALALYRKFGFETEGEMRDYAVRD 156
>pdb|1TIQ|A Chain A, Crystal Structure Of An Acetyltransferase (Paia) In
Complex With Coa And Dtt From Bacillus Subtilis,
Northeast Structural Genomics Target Sr64.
pdb|1TIQ|B Chain B, Crystal Structure Of An Acetyltransferase (Paia) In
Complex With Coa And Dtt From Bacillus Subtilis,
Northeast Structural Genomics Target Sr64
Length = 180
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 12/115 (10%)
Query: 40 RSFDEDLKKKNSGLLYIQIHGQVVGYVMY-----------AWPTSLSASITKLNYRGQGR 88
+++L +S +I ++ GYV A + K +++ G
Sbjct: 48 EQLEKELSNXSSQFFFIYFDHEIAGYVKVNIDDAQSEEXGAESLEIERIYIKNSFQKHGL 107
Query: 89 GEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYSADRP 143
G+ LL AI+ R L V A+ YKK GF V T +Y D
Sbjct: 108 GKHLLNKAIEIALERNKKNIWLGVWEKNENAIAFYKKXGF-VQTGAHSFYXGDEE 161
>pdb|2KCW|A Chain A, Solution Structure Of Apo-Form Yjab From Escherichia Coli
Length = 147
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 36 ESLARSFDEDLKKKNSGLLYIQIH--GQVVGYVMYAWPTSLSASITKLNYRGQGRGEALL 93
E L RSF + L++ ++ Q VG+++ + + A + RG G G L+
Sbjct: 40 EDLVRSFLPEAP------LWVAVNERDQPVGFMLLSG-QHMDALFIDPDVRGCGVGRVLV 92
Query: 94 EAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQV 130
E A+ T +V+ AV YKK GF+V
Sbjct: 93 EHALSMAPELTT-----NVNEQNEQAVGFYKKVGFKV 124
>pdb|3FIN|T Chain T, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit
Length = 138
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 5 GTVTELQRNSTNWTFVVDEI---VKMEKKIFPKHESLARSFD 43
G V ++RN N TF V ++ V +E +IFP H L + D
Sbjct: 47 GIVIRIRRNGFNTTFTVRKVSYGVGVE-RIFPLHSPLIQKID 87
>pdb|3TVE|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVH|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
Length = 137
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 5 GTVTELQRNSTNWTFVVDEI---VKMEKKIFPKHESLARSFD 43
G V ++RN N TF V ++ V +E +IFP H L + D
Sbjct: 47 GIVIRIRRNGFNTTFTVRKVSYGVGVE-RIFPLHSPLIQKID 87
>pdb|3PYO|P Chain P, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The First 70s
Ribosome.
pdb|3PYR|P Chain P, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The Second 70s
Ribosome.
pdb|3PYT|P Chain P, Crystal Structure Of A Complex Containing Domain 3 Of
Crpv Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYV|P Chain P, Crystal Structure Of A Complex Containing Domain 3 Of
Crpv Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The Second 70s Ribosome
Length = 137
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 5 GTVTELQRNSTNWTFVVDEI---VKMEKKIFPKHESLARSFD 43
G V ++RN N TF V ++ V +E +IFP H L + D
Sbjct: 47 GIVIRIRRNGFNTTFTVRKVSYGVGVE-RIFPLHSPLIQKID 87
>pdb|2J01|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of
4). This File Contains The 50s Subunit From Molecule I.
pdb|2J03|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of
4). This File Contains The 50s Subunit From Molecule
Ii.
pdb|2HGJ|S Chain S, Crystal Structure Of The 70s Thermus Thermophilus
Ribosome Showing How The 16s 3'-End Mimicks Mrna E And
P Codons. This Entry 2hgj Contains 50s Ribosomal
Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb
Entry 2hgi.
pdb|2HGQ|S Chain S, Crystal Structure Of The 70s Thermus Thermophilus
Ribosome With Translocated And Rotated Shine-Dalgarno
Duplex. This Entry 2hgq Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
2hgp.
pdb|2HGU|S Chain S, 70s T.Th. Ribosome Functional Complex With Mrna And E-
And P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|2V47|T Chain T, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe
And Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2V49|T Chain T, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe
And Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2.
pdb|2WDI|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|T Chain T, Insights Into Translational Termination From The
Structure Of Rf2 Bound To The Ribosome
pdb|2WH4|T Chain T, Insights Into Translational Termination From The
Structure Of Rf2 Bound To The Ribosome
pdb|3HUX|T Chain T, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|T Chain T, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|T Chain T, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of
4).
pdb|2WRL|T Chain T, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|T Chain T, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|T Chain T, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|T Chain T, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|T Chain T, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|T Chain T, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|T Chain T, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|T Chain T, The Structures Of Viomycin Bound To The 70s Ribosome.
This File Contains The 50s Subunit For Molecule I
pdb|3KNK|T Chain T, The Structures Of Viomycin Bound To The 70s Ribosome.
This File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|T Chain T, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|T Chain T, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|3I8F|R Chain R, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8I|R Chain R, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9C|R Chain R, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule
B. The 30s Subunit Can Be Found In Pdb Entry 3i9b.
Molecule A In The S Asymmetric Unit Is Deposited As
3i9d (30s) And 3i9e (50s)
pdb|3I9E|R Chain R, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule
A. The 30s Subunit Can Be Found In Pdb Entry 3i9d.
Molecule B In The S Asymmetric Unit Is Deposited As
3i9b (30s) And 3i9c (50s)
pdb|2X9S|T Chain T, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|T Chain T, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XG0|T Chain T, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|T Chain T, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|3OH5|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OH7|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OHJ|T Chain T, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHK|T Chain T, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHZ|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI1|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI3|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI5|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQE|T Chain T, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The
70s Ribosome With A Gtp Analog
pdb|2XTG|T Chain T, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|T Chain T, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|T Chain T, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|T Chain T, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|T Chain T, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|T Chain T, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y13|T Chain T, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|T Chain T, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Cognate Codon On The 70s Ribosome.
pdb|2Y17|T Chain T, Ef-Tu Complex 3
pdb|2Y19|T Chain T, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|3ZVP|T Chain T, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release
Factor 3
pdb|3UXQ|T Chain T, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXR|T Chain T, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UYE|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex
pdb|3UYG|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex
pdb|3UZ1|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex With Paromomycin
pdb|3UZ2|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex With Paromomycin.
pdb|3UZ8|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZ9|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZF|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex
pdb|3UZH|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex.
pdb|3UZK|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex With Paromomycin
pdb|3UZN|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-cognate Trna-tyr Complex With Paromomycin
pdb|4ABS|T Chain T, Complex Of Smpb, A Tmrna Fragment And
Ef-Tu-Gdp-Kirromycin With The 70s Ribosome
pdb|4DHA|T Chain T, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHC|T Chain T, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V23|T Chain T, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V25|T Chain T, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|3V27|T Chain T, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V29|T Chain T, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Entry Contains The 50s Subunit Of The 2nd Molecule In
The Asu.
pdb|3V2D|T Chain T, Crystal Structure Of Yfia Bound To The 70s Ribosome.
This Pdb Entry Contains Coordinates For The 50s Subunit
Of The 1st Ribosome In The Asu
pdb|3V2F|T Chain T, Crystal Structure Of Yfia Bound To The 70s Ribosome.
This Pdb Entry Contains Coordinates For The 50s Subunit
Of The 2nd Ribosome In The Asu
pdb|4G5L|R Chain R, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5N|R Chain R, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule B.
pdb|4G5U|R Chain R, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5W|R Chain R, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule B
Length = 146
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 5 GTVTELQRNSTNWTFVVDEI---VKMEKKIFPKHESLARSFD 43
G V ++RN N TF V ++ V +E +IFP H L + D
Sbjct: 47 GIVIRIRRNGFNTTFTVRKVSYGVGVE-RIFPLHSPLIQKID 87
>pdb|1VSA|N Chain N, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|1VSP|N Chain N, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3D5B|T Chain T, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5D|T Chain T, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1F|T Chain T, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|T Chain T, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400.
pdb|3MRZ|P Chain P, Recognition Of The Amber Stop Codon By Release Factor
Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
3ms0. Molecule A In The Same Asymmetric Unit Is
Deposited As 3mr8 (50s) And 3ms1 (30s).
pdb|3MS1|P Chain P, Recognition Of The Amber Stop Codon By Release Factor
Rf1. This Entry 3ms1 Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
3mr8. Molecule B In The Same Asymmetric Unit Is
Deposited As 3mrz (50s) And 3ms0 (30s)
Length = 146
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 5 GTVTELQRNSTNWTFVVDEI---VKMEKKIFPKHESLARSFD 43
G V ++RN N TF V ++ V +E +IFP H L + D
Sbjct: 47 GIVIRIRRNGFNTTFTVRKVSYGVGVE-RIFPLHSPLIQKID 87
>pdb|3LD2|A Chain A, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|B Chain B, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|C Chain C, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|D Chain D, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
Length = 197
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 21 VDEIVKMEKKIFPKHESLA----RSFDEDLKK--KNSGLLYIQIHGQVVGYVMYA--WPT 72
++++V++E K + + + S D+ ++K N+ L +I ++VG + Y+ +P
Sbjct: 45 IEQVVELENKTWSEQNTPVPLPVASKDQIIQKFESNTHFLVAKIKDKIVGVLDYSSLYPF 104
Query: 73 SLSASITKLNY------RGQGRGEALLEAAIKKCRT--RTVLRKTLHVDPLRTPAVNLYK 124
I R +G G AL++ + + ++ + VL +HV AV YK
Sbjct: 105 PSGQHIVTFGIAVAEKERRKGIGRALVQIFLNEVKSDYQKVL---IHVLSSNQEAVLFYK 161
Query: 125 KFGFQVDT 132
K GF ++
Sbjct: 162 KLGFDLEA 169
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 41 SFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTSLSAS 77
SFDE KK ++ LY I +V ++ WP L S
Sbjct: 289 SFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGS 325
>pdb|1UFH|A Chain A, Structure Of Putative Acetyltransferase, Yycn Protein Of
Bacillus Subtilis
pdb|1UFH|B Chain B, Structure Of Putative Acetyltransferase, Yycn Protein Of
Bacillus Subtilis
Length = 180
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 83 YRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQ 129
YRG+G + L A + R+ + + +LHV A LY++ GFQ
Sbjct: 124 YRGKGYAKQALAALDQAARSMGIRKLSLHVFAHNQTARKLYEQTGFQ 170
>pdb|1ON0|A Chain A, Crystal Structure Of Putative Acetyltransferase (yycn)
From Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr144
pdb|1ON0|B Chain B, Crystal Structure Of Putative Acetyltransferase (yycn)
From Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr144
pdb|1ON0|C Chain C, Crystal Structure Of Putative Acetyltransferase (yycn)
From Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr144
pdb|1ON0|D Chain D, Crystal Structure Of Putative Acetyltransferase (yycn)
From Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr144
Length = 158
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 83 YRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQ 129
YRG+G + L A + R+ + + +LHV A LY++ GFQ
Sbjct: 100 YRGKGYAKQALAALDQAARSXGIRKLSLHVFAHNQTARKLYEQTGFQ 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,504,443
Number of Sequences: 62578
Number of extensions: 160286
Number of successful extensions: 409
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 27
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)