Query 047740
Match_columns 154
No_of_seqs 225 out of 1438
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 02:41:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3139 N-acetyltransferase [G 99.9 2.3E-21 5E-26 113.7 16.2 129 21-151 27-164 (165)
2 PRK09491 rimI ribosomal-protei 99.9 3.4E-21 7.3E-26 116.2 16.4 138 5-151 2-146 (146)
3 PRK10140 putative acetyltransf 99.9 1.4E-20 3E-25 115.3 16.7 142 1-149 1-160 (162)
4 PRK10146 aminoalkylphosphonic 99.9 3.9E-21 8.4E-26 115.6 13.5 124 3-132 2-137 (144)
5 TIGR01575 rimI ribosomal-prote 99.9 5E-21 1.1E-25 113.3 13.5 126 20-147 1-131 (131)
6 TIGR03827 GNAT_ablB putative b 99.9 1.3E-20 2.7E-25 123.8 15.2 142 3-151 114-266 (266)
7 PRK10151 ribosomal-protein-L7/ 99.9 2.6E-19 5.7E-24 111.4 17.0 145 3-153 9-178 (179)
8 PRK03624 putative acetyltransf 99.9 1.1E-19 2.3E-24 108.7 14.4 124 4-134 2-131 (140)
9 TIGR02382 wecD_rffC TDP-D-fuco 99.9 1.6E-19 3.5E-24 113.4 15.4 124 5-134 44-186 (191)
10 COG1247 Sortase and related ac 99.9 1.6E-19 3.5E-24 108.8 14.6 143 5-153 2-166 (169)
11 PF13420 Acetyltransf_4: Acety 99.8 7.1E-19 1.5E-23 107.0 17.2 129 7-141 1-147 (155)
12 PTZ00330 acetyltransferase; Pr 99.8 6.6E-19 1.4E-23 106.3 14.1 124 1-133 3-141 (147)
13 PRK15130 spermidine N1-acetylt 99.8 2.2E-18 4.8E-23 107.9 16.8 142 3-150 5-165 (186)
14 PRK10809 ribosomal-protein-S5- 99.8 1.9E-18 4.1E-23 108.9 16.5 142 3-150 16-186 (194)
15 KOG3216 Diamine acetyltransfer 99.8 6.1E-19 1.3E-23 102.5 12.7 131 3-134 2-147 (163)
16 PRK10975 TDP-fucosamine acetyl 99.8 1.6E-18 3.5E-23 109.1 15.8 125 5-135 47-190 (194)
17 PF13523 Acetyltransf_8: Acety 99.8 5.5E-18 1.2E-22 102.8 17.5 123 7-135 1-143 (152)
18 COG0456 RimI Acetyltransferase 99.8 3.2E-19 7E-24 110.7 12.1 140 4-150 11-172 (177)
19 TIGR03585 PseH pseudaminic aci 99.8 3.1E-18 6.6E-23 104.3 15.4 135 6-147 2-155 (156)
20 TIGR02406 ectoine_EctA L-2,4-d 99.8 9.7E-19 2.1E-23 106.5 13.0 122 7-134 1-129 (157)
21 KOG3235 Subunit of the major N 99.8 1.8E-19 3.9E-24 105.2 7.6 141 5-152 2-154 (193)
22 PF00583 Acetyltransf_1: Acety 99.8 3.8E-18 8.1E-23 93.3 10.4 74 56-129 1-83 (83)
23 PLN02706 glucosamine 6-phospha 99.8 2.5E-17 5.4E-22 99.7 13.1 122 3-133 5-144 (150)
24 PRK07922 N-acetylglutamate syn 99.8 3.3E-17 7.1E-22 100.9 13.2 119 3-133 4-127 (169)
25 TIGR03103 trio_acet_GNAT GNAT- 99.8 5E-17 1.1E-21 115.9 15.8 125 4-135 82-219 (547)
26 PF13527 Acetyltransf_9: Acety 99.8 8.7E-17 1.9E-21 94.7 13.5 114 6-131 1-127 (127)
27 PRK10514 putative acetyltransf 99.8 9E-17 2E-21 96.7 13.6 129 5-148 2-142 (145)
28 PRK07757 acetyltransferase; Pr 99.8 2.8E-17 6.1E-22 99.7 11.3 114 5-133 2-122 (152)
29 PRK10314 putative acyltransfer 99.8 1.2E-17 2.7E-22 101.1 9.5 127 20-151 16-150 (153)
30 PHA00673 acetyltransferase dom 99.8 2.3E-16 5E-21 94.0 14.1 112 20-132 16-145 (154)
31 PF13673 Acetyltransf_10: Acet 99.7 1.4E-16 3E-21 92.5 11.5 82 39-128 32-117 (117)
32 PRK10562 putative acetyltransf 99.7 1.5E-15 3.1E-20 91.5 15.0 127 7-151 2-142 (145)
33 TIGR01686 FkbH FkbH-like domai 99.7 5.4E-16 1.2E-20 104.4 12.5 121 3-131 185-319 (320)
34 TIGR01890 N-Ac-Glu-synth amino 99.7 5.9E-16 1.3E-20 108.0 12.6 134 6-150 284-428 (429)
35 TIGR03448 mycothiol_MshD mycot 99.7 9.2E-16 2E-20 102.4 12.9 83 52-134 199-289 (292)
36 PF13302 Acetyltransf_3: Acety 99.7 3.3E-15 7.2E-20 89.5 14.1 119 5-129 2-142 (142)
37 PRK05279 N-acetylglutamate syn 99.7 4.7E-16 1E-20 108.9 11.9 132 5-151 295-441 (441)
38 PLN02825 amino-acid N-acetyltr 99.7 7.7E-16 1.7E-20 108.1 12.8 132 6-151 369-514 (515)
39 PHA01807 hypothetical protein 99.7 5.7E-15 1.2E-19 88.9 14.4 87 40-126 42-136 (153)
40 PRK09831 putative acyltransfer 99.7 1.1E-15 2.3E-20 92.3 11.1 127 6-150 2-144 (147)
41 KOG3138 Predicted N-acetyltran 99.7 3.8E-16 8.3E-21 95.5 7.8 139 5-151 17-172 (187)
42 KOG3396 Glucosamine-phosphate 99.7 6.3E-15 1.4E-19 84.2 11.5 120 4-132 6-143 (150)
43 PRK12308 bifunctional arginino 99.7 2.7E-15 5.7E-20 108.7 12.4 119 4-134 463-585 (614)
44 PF13508 Acetyltransf_7: Acety 99.7 9E-15 1.9E-19 79.1 11.5 73 51-130 3-79 (79)
45 KOG3234 Acetyltransferase, (GN 99.6 1.9E-15 4.1E-20 88.5 7.8 104 50-153 40-153 (173)
46 PRK01346 hypothetical protein; 99.6 2.3E-14 5E-19 99.8 14.3 124 1-137 3-140 (411)
47 COG1246 ArgA N-acetylglutamate 99.6 1E-14 2.2E-19 85.9 10.1 114 6-133 2-123 (153)
48 TIGR03448 mycothiol_MshD mycot 99.6 2.4E-14 5.3E-19 95.6 13.0 82 51-136 46-131 (292)
49 COG3153 Predicted acetyltransf 99.6 5.1E-14 1.1E-18 85.4 12.6 138 3-152 2-151 (171)
50 KOG2488 Acetyltransferase (GNA 99.6 2.2E-14 4.7E-19 86.7 8.1 92 44-135 85-184 (202)
51 COG1670 RimL Acetyltransferase 99.6 3.7E-13 8.1E-18 84.0 13.2 91 60-150 77-178 (187)
52 PF08445 FR47: FR47-like prote 99.5 8.3E-13 1.8E-17 72.2 11.5 69 60-133 10-82 (86)
53 PRK13688 hypothetical protein; 99.5 1.3E-12 2.7E-17 79.2 11.4 77 50-134 44-134 (156)
54 cd02169 Citrate_lyase_ligase C 99.5 1.2E-12 2.6E-17 86.8 10.8 74 52-133 7-84 (297)
55 COG3981 Predicted acetyltransf 99.5 1.6E-12 3.5E-17 77.7 10.0 84 52-135 70-161 (174)
56 PF12746 GNAT_acetyltran: GNAT 99.4 9.2E-12 2E-16 81.0 12.3 87 52-141 166-255 (265)
57 COG3393 Predicted acetyltransf 99.4 1E-11 2.2E-16 79.3 12.0 87 49-136 175-265 (268)
58 TIGR00124 cit_ly_ligase [citra 99.4 1.2E-11 2.6E-16 83.3 12.9 77 51-135 31-111 (332)
59 COG2153 ElaA Predicted acyltra 99.4 4.8E-12 1E-16 73.5 8.6 98 51-153 50-154 (155)
60 TIGR01211 ELP3 histone acetylt 99.3 1.9E-10 4.2E-15 81.7 11.6 79 52-133 412-516 (522)
61 KOG3397 Acetyltransferases [Ge 99.2 1.9E-10 4.2E-15 68.9 9.4 113 20-136 24-144 (225)
62 PF08444 Gly_acyl_tr_C: Aralky 99.1 7.2E-10 1.6E-14 59.8 7.0 72 59-132 7-79 (89)
63 cd04301 NAT_SF N-Acyltransfera 99.0 1.5E-08 3.3E-13 51.7 8.1 57 54-110 2-64 (65)
64 PF13718 GNAT_acetyltr_2: GNAT 98.9 1.2E-07 2.5E-12 59.3 13.1 113 39-152 15-196 (196)
65 COG5628 Predicted acetyltransf 98.9 3.8E-08 8.3E-13 55.5 9.2 103 20-130 10-120 (143)
66 KOG4135 Predicted phosphogluco 98.9 9.3E-08 2E-12 56.1 10.3 53 82-134 118-171 (185)
67 COG3818 Predicted acetyltransf 98.9 1.3E-08 2.9E-13 58.3 6.5 123 3-135 6-150 (167)
68 KOG4144 Arylalkylamine N-acety 98.8 9.6E-09 2.1E-13 60.5 4.8 122 4-134 11-162 (190)
69 PF14542 Acetyltransf_CG: GCN5 98.8 1.5E-07 3.3E-12 50.3 8.2 65 55-125 3-71 (78)
70 PF12568 DUF3749: Acetyltransf 98.7 2.7E-07 5.9E-12 53.2 9.1 89 40-132 28-124 (128)
71 COG2388 Predicted acetyltransf 98.7 2.8E-07 6E-12 51.2 7.7 63 49-111 13-79 (99)
72 COG3375 Uncharacterized conser 98.6 1E-05 2.2E-10 51.0 12.9 144 4-152 2-165 (266)
73 COG1444 Predicted P-loop ATPas 98.5 1.2E-05 2.5E-10 59.7 14.1 113 39-153 458-612 (758)
74 COG4552 Eis Predicted acetyltr 98.5 9.5E-07 2.1E-11 59.2 7.8 80 52-136 40-130 (389)
75 COG3053 CitC Citrate lyase syn 98.3 6.8E-06 1.5E-10 53.9 8.2 80 53-137 38-119 (352)
76 COG3882 FkbH Predicted enzyme 98.0 9.1E-05 2E-09 52.1 9.2 123 5-134 414-551 (574)
77 PF00765 Autoind_synth: Autoin 98.0 0.001 2.3E-08 41.6 13.4 129 20-151 9-173 (182)
78 TIGR03827 GNAT_ablB putative b 98.0 3.8E-05 8.1E-10 51.0 6.9 64 86-153 20-83 (266)
79 PHA00432 internal virion prote 97.8 0.00052 1.1E-08 40.4 8.4 79 50-133 36-121 (137)
80 COG1243 ELP3 Histone acetyltra 97.8 4.8E-05 1E-09 53.1 4.7 48 82-132 461-508 (515)
81 COG0454 WecD Histone acetyltra 97.7 7.9E-05 1.7E-09 42.5 4.0 39 82-128 92-130 (156)
82 PF13480 Acetyltransf_6: Acety 97.6 0.0047 1E-07 36.6 11.2 62 50-112 70-135 (142)
83 COG3916 LasI N-acyl-L-homoseri 97.4 0.012 2.7E-07 37.2 11.3 129 20-151 16-181 (209)
84 PRK13834 putative autoinducer 97.3 0.016 3.5E-07 37.1 12.6 110 19-131 16-163 (207)
85 TIGR03694 exosort_acyl putativ 97.2 0.0068 1.5E-07 39.8 8.9 41 88-131 156-196 (241)
86 KOG2535 RNA polymerase II elon 97.1 0.0011 2.3E-08 45.1 4.5 48 82-132 498-546 (554)
87 PF04958 AstA: Arginine N-succ 97.1 0.017 3.7E-07 39.7 10.1 94 4-103 1-153 (342)
88 PHA01733 hypothetical protein 97.0 0.0046 1E-07 37.1 6.1 86 49-134 45-133 (153)
89 PRK14852 hypothetical protein; 96.9 0.011 2.5E-07 45.9 9.0 99 50-151 74-199 (989)
90 PF04377 ATE_C: Arginine-tRNA- 96.9 0.036 7.9E-07 32.6 10.5 75 39-113 25-104 (128)
91 PF11039 DUF2824: Protein of u 96.8 0.038 8.3E-07 32.3 10.8 98 49-148 36-137 (151)
92 TIGR03019 pepcterm_femAB FemAB 96.8 0.08 1.7E-06 36.5 11.6 88 51-138 195-286 (330)
93 PRK10456 arginine succinyltran 96.6 0.033 7.1E-07 38.3 8.6 59 5-69 2-77 (344)
94 PF09924 DUF2156: Uncharacteri 96.4 0.064 1.4E-06 36.4 9.1 65 50-114 179-248 (299)
95 PF01233 NMT: Myristoyl-CoA:pr 96.3 0.12 2.6E-06 31.5 11.5 93 18-110 34-149 (162)
96 PRK01305 arginyl-tRNA-protein 96.1 0.22 4.9E-06 32.7 11.5 93 40-134 131-228 (240)
97 PF01853 MOZ_SAS: MOZ/SAS fami 96.0 0.1 2.2E-06 32.8 7.5 44 61-104 66-113 (188)
98 cd04264 DUF619-NAGS DUF619 dom 95.8 0.11 2.4E-06 29.2 6.6 59 55-118 12-76 (99)
99 PF13880 Acetyltransf_13: ESCO 95.8 0.018 3.9E-07 30.0 3.1 19 82-100 16-34 (70)
100 TIGR03245 arg_AOST_alph argini 95.7 0.24 5.2E-06 34.1 9.0 57 7-69 2-76 (336)
101 TIGR03243 arg_catab_AOST argin 95.6 0.29 6.3E-06 33.7 9.1 57 7-69 2-75 (335)
102 TIGR03244 arg_catab_AstA argin 95.6 0.25 5.4E-06 34.1 8.8 57 7-69 2-75 (336)
103 PLN03238 probable histone acet 95.1 0.11 2.4E-06 34.7 5.9 46 59-104 139-188 (290)
104 PF02388 FemAB: FemAB family; 94.8 0.34 7.3E-06 34.6 8.0 102 52-153 36-160 (406)
105 PF05301 Mec-17: Touch recepto 94.8 0.42 9.1E-06 27.7 8.6 41 82-125 57-97 (120)
106 cd04265 DUF619-NAGS-U DUF619 d 94.6 0.39 8.4E-06 27.0 6.4 55 59-118 17-76 (99)
107 KOG4387 Ornithine decarboxylas 94.2 0.25 5.5E-06 30.6 5.5 68 86-153 114-185 (191)
108 KOG3698 Hyaluronoglucosaminida 93.9 0.096 2.1E-06 38.5 3.8 53 82-134 827-879 (891)
109 PF06852 DUF1248: Protein of u 93.9 0.97 2.1E-05 28.4 12.4 110 20-133 14-137 (181)
110 PTZ00064 histone acetyltransfe 93.4 0.32 7E-06 35.2 5.5 46 59-104 368-417 (552)
111 PLN03239 histone acetyltransfe 93.4 0.42 9E-06 33.1 5.9 46 59-104 197-246 (351)
112 PHA02769 hypothetical protein; 93.1 0.13 2.8E-06 29.3 2.7 46 87-134 92-140 (154)
113 PLN00104 MYST -like histone ac 92.2 0.3 6.6E-06 35.0 4.1 46 59-104 290-339 (450)
114 PF12261 T_hemolysin: Thermost 91.1 2.6 5.6E-05 26.5 7.8 54 76-132 88-141 (179)
115 COG2935 Putative arginyl-tRNA: 90.0 3 6.5E-05 27.6 6.7 57 59-115 159-218 (253)
116 PF11090 DUF2833: Protein of u 89.8 2.1 4.5E-05 23.3 7.6 28 105-132 56-83 (86)
117 KOG2779 N-myristoyl transferas 89.1 6.1 0.00013 27.7 8.6 123 7-138 263-402 (421)
118 COG3138 AstA Arginine/ornithin 88.9 2.8 6E-05 28.4 6.1 59 5-69 2-77 (336)
119 PF04339 DUF482: Protein of un 88.5 7.1 0.00015 27.8 10.6 124 5-137 200-333 (370)
120 KOG2036 Predicted P-loop ATPas 87.6 4.4 9.5E-05 31.3 7.0 71 82-152 625-745 (1011)
121 PF02799 NMT_C: Myristoyl-CoA: 86.6 6.3 0.00014 25.1 13.1 123 7-138 31-170 (190)
122 KOG2747 Histone acetyltransfer 86.5 1.5 3.3E-05 31.0 4.0 42 62-103 247-292 (396)
123 PF04816 DUF633: Family of unk 86.2 2.8 6.1E-05 27.0 5.0 48 87-134 74-123 (205)
124 PF02100 ODC_AZ: Ornithine dec 86.0 4.7 0.0001 23.1 5.8 63 89-151 39-108 (108)
125 KOG2779 N-myristoyl transferas 85.8 10 0.00022 26.7 7.5 108 17-124 90-223 (421)
126 PRK02983 lysS lysyl-tRNA synth 85.4 7.8 0.00017 31.8 7.9 56 59-114 429-487 (1094)
127 COG2898 Uncharacterized conser 84.7 9.5 0.00021 28.5 7.5 59 56-114 398-460 (538)
128 cd07235 MRD Mitomycin C resist 83.3 2 4.3E-05 24.5 3.2 25 107-132 3-27 (122)
129 cd08353 Glo_EDI_BRP_like_7 Thi 82.3 1.8 4E-05 25.5 2.8 29 104-133 3-31 (142)
130 COG5027 SAS2 Histone acetyltra 82.2 0.94 2E-05 31.4 1.6 41 61-101 248-292 (395)
131 KOG2696 Histone acetyltransfer 81.7 7.4 0.00016 27.5 5.6 34 82-116 228-261 (403)
132 PF02474 NodA: Nodulation prot 77.3 11 0.00023 23.7 4.8 131 19-153 18-178 (196)
133 PF12953 DUF3842: Domain of un 74.9 6.6 0.00014 23.3 3.4 47 82-132 6-52 (131)
134 cd09012 Glo_EDI_BRP_like_24 Th 73.6 4.4 9.6E-05 23.2 2.6 24 108-132 4-27 (124)
135 cd08356 Glo_EDI_BRP_like_17 Th 73.5 3.4 7.3E-05 23.5 2.1 19 116-134 12-30 (113)
136 cd08342 HPPD_N_like N-terminal 72.7 9.2 0.0002 22.5 3.9 28 106-134 2-30 (136)
137 cd07267 THT_Oxygenase_N N-term 72.3 5.9 0.00013 22.3 2.9 27 106-133 5-31 (113)
138 cd08346 PcpA_N_like N-terminal 71.7 10 0.00022 21.4 3.9 29 105-134 2-31 (126)
139 cd08344 MhqB_like_N N-terminal 71.7 7 0.00015 22.0 3.1 28 105-133 3-30 (112)
140 KOG3014 Protein involved in es 71.5 27 0.0006 23.3 8.9 43 82-125 194-238 (257)
141 cd08358 Glo_EDI_BRP_like_21 Th 71.4 10 0.00022 22.4 3.7 27 107-134 5-32 (127)
142 COG3473 Maleate cis-trans isom 71.2 15 0.00033 23.9 4.6 37 98-134 111-150 (238)
143 PF00903 Glyoxalase: Glyoxalas 70.7 9.3 0.0002 21.6 3.6 30 105-135 2-32 (128)
144 COG2384 Predicted SAM-dependen 70.0 15 0.00033 24.1 4.5 48 87-134 93-142 (226)
145 PF13380 CoA_binding_2: CoA bi 69.9 19 0.00041 20.8 4.8 43 90-132 65-107 (116)
146 COG2266 GTP:adenosylcobinamide 69.9 17 0.00038 22.8 4.6 47 89-136 26-72 (177)
147 cd08350 BLMT_like BLMT, a bleo 68.1 5.8 0.00012 22.6 2.3 21 115-135 12-32 (120)
148 TIGR02990 ectoine_eutA ectoine 67.8 15 0.00033 24.3 4.4 48 87-134 101-152 (239)
149 PF04015 DUF362: Domain of unk 67.5 21 0.00045 22.9 4.9 47 87-133 19-67 (206)
150 PF09390 DUF1999: Protein of u 66.0 28 0.0006 21.2 11.9 117 6-132 2-140 (161)
151 cd08362 BphC5-RrK37_N_like N-t 64.6 11 0.00023 21.3 2.9 30 104-134 3-33 (120)
152 PF14696 Glyoxalase_5: Hydroxy 64.1 4.3 9.4E-05 24.4 1.2 30 104-134 9-38 (139)
153 PF12652 CotJB: CotJB protein; 64.0 3.3 7.2E-05 22.2 0.6 36 91-126 3-38 (78)
154 COG3543 Uncharacterized conser 63.8 17 0.00036 21.6 3.4 34 82-115 15-49 (135)
155 TIGR03645 glyox_marine lactoyl 62.5 12 0.00027 22.8 3.1 28 104-132 4-32 (162)
156 COG3607 Predicted lactoylgluta 62.2 5.6 0.00012 23.4 1.4 18 117-134 15-32 (133)
157 cd07265 2_3_CTD_N N-terminal d 62.2 15 0.00031 20.9 3.2 29 105-134 5-34 (122)
158 COG2348 Peptidoglycan interpep 61.3 62 0.0013 23.7 8.2 88 52-139 41-150 (418)
159 PF13444 Acetyltransf_5: Acety 61.1 27 0.00059 19.5 5.4 22 50-71 29-51 (101)
160 PF00925 GTP_cyclohydro2: GTP 61.0 26 0.00056 21.9 4.2 45 82-135 124-168 (169)
161 cd07253 Glo_EDI_BRP_like_2 Thi 60.8 15 0.00032 20.7 3.1 30 104-134 3-33 (125)
162 cd07242 Glo_EDI_BRP_like_6 Thi 60.7 21 0.00045 20.4 3.7 29 105-134 2-34 (128)
163 cd08352 Glo_EDI_BRP_like_1 Thi 60.3 20 0.00043 20.1 3.6 29 104-133 3-32 (125)
164 cd04266 DUF619-NAGS-FABP DUF61 60.2 31 0.00067 19.9 7.0 59 59-123 17-87 (108)
165 PF00571 CBS: CBS domain CBS d 59.4 14 0.00031 17.6 2.5 22 47-68 27-48 (57)
166 cd07243 2_3_CTD_C C-terminal d 59.0 22 0.00048 21.2 3.7 29 105-134 7-36 (143)
167 COG2994 HlyC ACP:hemolysin acy 58.9 17 0.00037 21.9 2.9 20 50-69 52-71 (148)
168 COG0807 RibA GTP cyclohydrolas 58.3 37 0.0008 21.8 4.6 47 82-137 125-171 (193)
169 cd07240 ED_TypeI_classII_N N-t 58.0 21 0.00046 19.8 3.4 28 106-134 4-32 (117)
170 cd07252 BphC1-RGP6_N_like N-te 57.2 18 0.0004 20.5 3.0 28 105-133 3-31 (120)
171 PF12681 Glyoxalase_2: Glyoxal 56.2 15 0.00033 20.1 2.5 18 117-134 7-25 (108)
172 cd07244 FosA FosA, a Fosfomyci 56.0 30 0.00065 19.6 3.8 29 105-134 2-31 (121)
173 cd07237 BphC1-RGP6_C_like C-te 55.6 30 0.00064 20.9 3.9 29 104-133 9-38 (154)
174 PF02388 FemAB: FemAB family; 55.0 79 0.0017 22.9 9.2 48 82-129 327-379 (406)
175 PRK14968 putative methyltransf 54.9 49 0.0011 20.5 5.4 46 91-136 129-174 (188)
176 PRK10150 beta-D-glucuronidase; 54.1 56 0.0012 25.1 5.8 54 82-135 304-357 (604)
177 cd08348 BphC2-C3-RGP6_C_like T 53.8 32 0.0007 19.8 3.8 29 106-135 3-32 (134)
178 PF08901 DUF1847: Protein of u 53.3 38 0.00081 21.0 3.9 42 93-134 43-88 (157)
179 cd07241 Glo_EDI_BRP_like_3 Thi 52.6 28 0.0006 19.6 3.3 27 106-133 3-30 (125)
180 PRK03681 hypA hydrogenase nick 52.6 27 0.00059 20.2 3.2 37 87-123 5-47 (114)
181 PF10566 Glyco_hydro_97: Glyco 52.5 73 0.0016 21.8 5.5 41 91-132 73-124 (273)
182 COG0346 GloA Lactoylglutathion 52.4 27 0.00057 19.5 3.3 30 105-135 3-33 (138)
183 cd07255 Glo_EDI_BRP_like_12 Th 51.8 27 0.00059 19.7 3.2 29 105-134 3-32 (125)
184 TIGR00068 glyox_I lactoylgluta 51.1 23 0.00051 21.1 2.9 29 104-133 17-46 (150)
185 PF11124 Pho86: Inorganic phos 51.0 82 0.0018 21.9 9.5 74 59-132 177-270 (304)
186 PF13530 SCP2_2: Sterol carrie 50.8 67 0.0015 20.8 6.5 61 49-113 23-89 (218)
187 PRK11478 putative lyase; Provi 50.0 23 0.00049 20.2 2.7 28 104-132 6-34 (129)
188 cd07264 Glo_EDI_BRP_like_15 Th 49.5 37 0.0008 19.1 3.5 24 108-132 4-28 (125)
189 cd08364 FosX FosX, a fosfomyci 49.1 36 0.00079 19.7 3.5 29 104-133 4-33 (131)
190 cd07263 Glo_EDI_BRP_like_16 Th 48.6 25 0.00055 19.4 2.7 18 117-134 10-28 (119)
191 cd07256 HPCD_C_class_II C-term 48.0 36 0.00078 20.7 3.4 28 105-133 4-32 (161)
192 TIGR00100 hypA hydrogenase nic 47.6 36 0.00077 19.7 3.1 37 87-123 5-47 (115)
193 PF06559 DCD: 2'-deoxycytidine 47.4 21 0.00046 25.1 2.5 32 57-88 321-356 (364)
194 COG0375 HybF Zn finger protein 47.0 45 0.00098 19.5 3.4 37 87-123 5-47 (115)
195 PLN02300 lactoylglutathione ly 46.9 26 0.00056 23.8 2.9 29 104-133 24-53 (286)
196 cd07266 HPCD_N_class_II N-term 46.6 28 0.0006 19.6 2.7 28 105-133 5-33 (121)
197 cd07262 Glo_EDI_BRP_like_19 Th 46.2 38 0.00083 19.1 3.2 27 107-134 3-33 (123)
198 cd07249 MMCE Methylmalonyl-CoA 45.8 24 0.00053 19.9 2.4 28 106-134 2-30 (128)
199 COG2231 Uncharacterized protei 45.7 13 0.00029 24.0 1.2 41 85-132 120-160 (215)
200 cd04619 CBS_pair_6 The CBS dom 45.5 53 0.0012 18.2 3.9 28 41-68 81-108 (114)
201 TIGR00505 ribA GTP cyclohydrol 45.2 81 0.0017 20.2 4.7 44 82-134 123-166 (191)
202 PRK00762 hypA hydrogenase nick 45.1 42 0.00092 19.8 3.2 37 87-123 5-47 (124)
203 PF02836 Glyco_hydro_2_C: Glyc 44.9 99 0.0022 21.1 6.1 55 82-136 27-81 (298)
204 KOG1489 Predicted GTP-binding 44.8 25 0.00054 24.7 2.5 17 82-98 258-274 (366)
205 cd07238 Glo_EDI_BRP_like_5 Thi 44.7 22 0.00048 19.7 2.0 17 116-132 11-28 (112)
206 cd08357 Glo_EDI_BRP_like_18 Th 44.5 45 0.00097 18.7 3.4 25 108-133 3-28 (125)
207 TIGR03628 arch_S11P archaeal r 44.5 64 0.0014 18.8 6.8 50 85-134 43-104 (114)
208 PRK12380 hydrogenase nickel in 44.3 44 0.00095 19.3 3.1 37 87-123 5-47 (113)
209 cd09013 BphC-JF8_N_like N-term 44.1 47 0.001 18.7 3.4 30 104-134 6-36 (121)
210 PRK09607 rps11p 30S ribosomal 43.8 71 0.0015 19.2 6.8 46 89-134 55-111 (132)
211 cd08361 PpCmtC_N N-terminal do 43.7 32 0.00069 19.7 2.6 28 105-133 7-35 (124)
212 cd08360 MhqB_like_C C-terminal 43.3 49 0.0011 19.2 3.4 29 105-134 4-33 (134)
213 PRK06724 hypothetical protein; 43.3 62 0.0014 18.9 3.8 28 104-132 7-38 (128)
214 PF06414 Zeta_toxin: Zeta toxi 43.2 86 0.0019 19.9 5.6 45 88-132 77-124 (199)
215 PRK10291 glyoxalase I; Provisi 42.4 33 0.00073 19.7 2.6 18 116-133 7-25 (129)
216 cd08343 ED_TypeI_classII_C C-t 42.3 50 0.0011 19.0 3.3 25 108-133 3-28 (131)
217 PRK00393 ribA GTP cyclohydrola 42.3 91 0.002 20.1 4.6 45 82-135 126-170 (197)
218 PF02794 HlyC: RTX toxin acylt 42.2 48 0.001 19.9 3.1 18 52-69 36-53 (133)
219 cd08349 BLMA_like Bleomycin bi 42.2 31 0.00067 18.9 2.4 18 117-134 10-28 (112)
220 PLN03042 Lactoylglutathione ly 42.2 61 0.0013 20.6 3.8 29 105-134 28-57 (185)
221 PRK13683 hypothetical protein; 41.9 9.6 0.00021 20.7 0.2 50 88-137 24-83 (87)
222 KOG2499 Beta-N-acetylhexosamin 41.9 31 0.00068 25.6 2.7 32 101-132 330-361 (542)
223 COG3250 LacZ Beta-galactosidas 40.7 2E+02 0.0043 23.4 7.0 53 82-134 312-364 (808)
224 PF04768 DUF619: Protein of un 40.6 93 0.002 19.6 9.3 104 19-132 32-145 (170)
225 PF13264 DUF4055: Domain of un 40.4 83 0.0018 18.9 5.4 49 60-109 43-93 (138)
226 PLN02979 glycolate oxidase 39.4 71 0.0015 22.9 4.0 39 91-129 134-172 (366)
227 PF02268 TFIIA_gamma_N: Transc 39.0 50 0.0011 16.0 2.6 22 82-103 5-26 (49)
228 PF03588 Leu_Phe_trans: Leucyl 38.6 1E+02 0.0022 19.5 11.4 85 39-131 86-171 (173)
229 cd07233 Glyoxalase_I Glyoxalas 38.5 72 0.0016 17.7 4.3 26 107-133 3-29 (121)
230 PRK09318 bifunctional 3,4-dihy 38.3 1E+02 0.0022 22.4 4.7 33 101-135 324-356 (387)
231 cd09011 Glo_EDI_BRP_like_23 Th 38.2 51 0.0011 18.5 2.9 25 107-132 5-30 (120)
232 PF01155 HypA: Hydrogenase exp 37.9 49 0.0011 19.1 2.7 22 87-108 5-26 (113)
233 PRK04101 fosfomycin resistance 37.4 74 0.0016 18.7 3.6 29 104-133 4-33 (139)
234 cd07246 Glo_EDI_BRP_like_8 Thi 37.2 77 0.0017 17.6 4.0 24 110-134 7-31 (122)
235 PF07315 DUF1462: Protein of u 37.0 67 0.0014 17.9 2.9 29 38-66 53-81 (93)
236 PRK09319 bifunctional 3,4-dihy 36.9 1.1E+02 0.0023 23.5 4.7 35 100-136 346-380 (555)
237 PF00411 Ribosomal_S11: Riboso 36.8 85 0.0018 18.0 6.7 44 91-134 47-93 (110)
238 PRK14831 undecaprenyl pyrophos 36.7 67 0.0015 21.6 3.5 33 82-114 42-74 (249)
239 cd04736 MDH_FMN Mandelate dehy 36.6 85 0.0018 22.5 4.1 40 90-129 127-166 (361)
240 COG2401 ABC-type ATPase fused 36.2 38 0.00083 25.0 2.4 57 76-132 242-307 (593)
241 PRK00564 hypA hydrogenase nick 36.1 69 0.0015 18.6 3.1 22 87-108 5-26 (117)
242 PLN02367 lactoylglutathione ly 35.8 82 0.0018 21.0 3.7 29 105-134 76-105 (233)
243 cd02540 GT2_GlmU_N_bac N-termi 35.7 99 0.0022 19.8 4.2 42 89-130 25-66 (229)
244 PRK12485 bifunctional 3,4-dihy 35.7 1E+02 0.0022 22.3 4.3 34 98-134 332-365 (369)
245 COG5630 ARG2 Acetylglutamate s 35.3 1.8E+02 0.0038 21.2 6.3 103 20-131 346-458 (495)
246 PRK13886 conjugal transfer pro 35.2 1E+02 0.0022 20.7 4.1 46 84-130 10-56 (241)
247 TIGR01417 PTS_I_fam phosphoeno 35.1 1.3E+02 0.0028 23.1 5.1 44 91-134 482-525 (565)
248 PRK07758 hypothetical protein; 35.1 48 0.001 18.6 2.2 21 85-105 72-92 (95)
249 cd09014 BphC-JF8_C_like C-term 35.1 76 0.0017 19.5 3.4 29 104-133 6-35 (166)
250 cd06587 Glo_EDI_BRP_like This 34.8 49 0.0011 17.6 2.4 21 115-135 8-29 (112)
251 PLN02831 Bifunctional GTP cycl 34.7 1.1E+02 0.0024 22.7 4.6 33 101-135 377-409 (450)
252 PRK14019 bifunctional 3,4-dihy 34.2 1E+02 0.0022 22.2 4.2 34 98-134 329-362 (367)
253 PF12804 NTP_transf_3: MobA-li 34.2 68 0.0015 19.2 3.1 41 90-132 24-64 (160)
254 cd04182 GT_2_like_f GT_2_like_ 34.2 69 0.0015 19.6 3.2 40 89-128 25-64 (186)
255 PRK09311 bifunctional 3,4-dihy 33.9 1.2E+02 0.0027 22.1 4.6 33 101-135 343-375 (402)
256 PF11633 SUD-M: Single-strande 33.7 94 0.002 18.8 3.3 39 94-135 26-64 (142)
257 cd07239 BphC5-RK37_C_like C-te 33.7 76 0.0016 18.9 3.2 28 105-133 5-33 (144)
258 cd07250 HPPD_C_like C-terminal 33.7 53 0.0012 20.8 2.6 30 105-134 4-35 (191)
259 cd03173 DUF619-like DUF619 dom 33.6 93 0.002 17.6 7.0 59 59-123 17-79 (98)
260 KOG3008 Quinolinate phosphorib 33.3 1.5E+02 0.0032 19.8 4.5 51 82-134 110-160 (300)
261 PRK11197 lldD L-lactate dehydr 33.3 1E+02 0.0022 22.4 4.1 40 90-129 134-173 (381)
262 cd04587 CBS_pair_CAP-ED_DUF294 32.9 62 0.0013 17.7 2.6 17 52-68 91-107 (113)
263 cd04597 CBS_pair_DRTGG_assoc2 32.8 95 0.0021 17.4 3.6 18 51-68 90-107 (113)
264 cd08355 Glo_EDI_BRP_like_14 Th 32.7 67 0.0015 18.1 2.8 20 115-134 9-29 (122)
265 COG5092 NMT1 N-myristoyl trans 32.5 1.8E+02 0.0039 20.6 7.3 44 91-137 375-418 (451)
266 COG2898 Uncharacterized conser 32.5 1.5E+02 0.0034 22.6 5.0 42 89-133 271-312 (538)
267 cd04596 CBS_pair_DRTGG_assoc T 32.3 90 0.0019 17.0 3.8 20 49-68 83-102 (108)
268 PRK08533 flagellar accessory p 32.2 1.4E+02 0.0031 19.6 4.5 45 86-130 33-78 (230)
269 COG0536 Obg Predicted GTPase [ 32.1 82 0.0018 22.5 3.4 18 82-99 221-238 (369)
270 cd08363 FosB FosB, a fosfomyci 31.9 91 0.002 18.1 3.3 27 106-133 2-29 (131)
271 cd04641 CBS_pair_28 The CBS do 31.8 98 0.0021 17.3 4.0 18 51-68 97-114 (120)
272 cd04604 CBS_pair_KpsF_GutQ_ass 31.6 94 0.002 16.9 3.9 18 51-68 91-108 (114)
273 PF02896 PEP-utilizers_C: PEP- 31.5 1.1E+02 0.0023 21.3 3.9 47 90-136 234-280 (293)
274 smart00116 CBS Domain in cysta 31.4 53 0.0012 14.0 3.2 17 52-68 25-41 (49)
275 PRK09781 hypothetical protein; 31.2 55 0.0012 19.8 2.2 37 70-106 15-54 (181)
276 PF04796 RepA_C: Plasmid encod 30.4 1.2E+02 0.0027 18.9 3.7 40 88-132 6-45 (161)
277 TIGR03211 catechol_2_3 catecho 30.2 86 0.0019 21.4 3.4 29 105-134 5-34 (303)
278 cd04583 CBS_pair_ABC_OpuCA_ass 30.2 97 0.0021 16.7 3.8 18 51-68 86-103 (109)
279 PF04260 DUF436: Protein of un 30.2 1.5E+02 0.0032 18.8 4.8 50 87-136 43-95 (172)
280 cd04610 CBS_pair_ParBc_assoc T 30.1 97 0.0021 16.6 3.7 18 51-68 84-101 (107)
281 TIGR00055 uppS undecaprenyl di 30.1 1.1E+02 0.0024 20.3 3.7 34 82-115 21-54 (226)
282 COG0826 Collagenase and relate 30.0 1.9E+02 0.0041 20.7 4.9 36 96-131 103-141 (347)
283 PF01255 Prenyltransf: Putativ 29.8 97 0.0021 20.4 3.4 31 84-114 18-48 (223)
284 cd04607 CBS_pair_NTP_transfera 29.8 1E+02 0.0022 16.9 3.7 18 51-68 90-107 (113)
285 PRK03824 hypA hydrogenase nick 29.7 57 0.0012 19.5 2.2 23 87-109 5-27 (135)
286 PRK14837 undecaprenyl pyrophos 29.7 1.1E+02 0.0025 20.3 3.6 34 82-115 28-61 (230)
287 KOG0207 Cation transport ATPas 29.4 3.3E+02 0.0072 22.6 9.6 66 48-131 700-765 (951)
288 COG3620 Predicted transcriptio 29.2 1.2E+02 0.0027 19.1 3.4 15 53-67 161-175 (187)
289 PF04339 DUF482: Protein of un 29.2 2.2E+02 0.0049 20.6 11.0 52 82-135 111-162 (370)
290 PF02334 RTP: Replication term 29.2 18 0.00038 20.9 -0.1 24 82-105 27-50 (122)
291 cd08354 Glo_EDI_BRP_like_13 Th 29.1 1.1E+02 0.0023 17.0 3.3 25 108-133 4-29 (122)
292 PF00633 HHH: Helix-hairpin-he 28.8 56 0.0012 13.7 1.5 12 87-98 18-29 (30)
293 cd04627 CBS_pair_14 The CBS do 28.7 1.2E+02 0.0025 17.1 3.8 18 51-68 100-117 (123)
294 COG4904 Uncharacterized protei 28.5 41 0.0009 20.5 1.4 16 117-132 70-85 (174)
295 PLN02493 probable peroxisomal 28.4 1.4E+02 0.003 21.5 4.1 40 90-129 134-173 (367)
296 PRK10240 undecaprenyl pyrophos 28.2 1.1E+02 0.0024 20.3 3.4 33 83-115 16-48 (229)
297 PRK08815 GTP cyclohydrolase; P 27.9 1.8E+02 0.0039 21.1 4.6 45 82-135 297-341 (375)
298 PF01910 DUF77: Domain of unkn 27.9 1.2E+02 0.0025 16.8 3.3 23 91-113 51-73 (92)
299 PF14871 GHL6: Hypothetical gl 27.8 1.4E+02 0.0031 17.8 3.6 28 82-109 35-62 (132)
300 PRK00756 acyltransferase NodA; 27.6 1.7E+02 0.0036 18.6 6.0 130 19-152 18-177 (196)
301 PF01136 Peptidase_U32: Peptid 27.6 1.7E+02 0.0037 19.1 4.3 20 112-131 45-64 (233)
302 PTZ00349 dehydrodolichyl dipho 27.5 1.2E+02 0.0026 21.4 3.6 33 82-114 41-73 (322)
303 PF13289 SIR2_2: SIR2-like dom 27.5 1.3E+02 0.0029 17.5 4.5 14 117-130 129-142 (143)
304 PRK03692 putative UDP-N-acetyl 27.5 2E+02 0.0043 19.4 4.7 51 89-139 90-142 (243)
305 TIGR00667 aat leucyl/phenylala 27.5 1.7E+02 0.0038 18.8 10.3 87 39-133 86-173 (185)
306 cd04197 eIF-2B_epsilon_N The N 27.3 1.1E+02 0.0024 19.7 3.3 26 90-115 31-56 (217)
307 cd00475 CIS_IPPS Cis (Z)-Isopr 27.2 1.3E+02 0.0028 19.9 3.6 33 82-114 22-54 (221)
308 cd08345 Fosfomycin_RP Fosfomyc 26.8 99 0.0021 16.9 2.8 24 109-133 3-27 (113)
309 PRK14829 undecaprenyl pyrophos 26.8 1.2E+02 0.0026 20.4 3.4 32 82-113 36-67 (243)
310 cd04615 CBS_pair_2 The CBS dom 26.7 1.2E+02 0.0026 16.5 3.8 18 51-68 90-107 (113)
311 TIGR02708 L_lactate_ox L-lacta 26.6 1.8E+02 0.0039 21.0 4.4 38 91-128 146-183 (367)
312 PRK14841 undecaprenyl pyrophos 26.6 1.4E+02 0.003 20.0 3.6 34 82-115 25-58 (233)
313 COG5092 NMT1 N-myristoyl trans 26.4 2.4E+02 0.0052 20.0 7.9 85 20-104 91-198 (451)
314 cd07247 SgaA_N_like N-terminal 26.4 1.1E+02 0.0024 16.8 3.0 27 107-134 3-30 (114)
315 PRK13690 hypothetical protein; 26.4 1.8E+02 0.0039 18.6 5.2 51 86-136 49-102 (184)
316 PRK14842 undecaprenyl pyrophos 26.4 1.4E+02 0.0031 20.0 3.7 34 82-115 30-63 (241)
317 cd04642 CBS_pair_29 The CBS do 26.3 1.3E+02 0.0028 16.9 4.0 18 51-68 103-120 (126)
318 PF13222 DUF4030: Protein of u 26.1 1.6E+02 0.0034 17.8 7.1 62 89-150 17-93 (142)
319 PRK10310 PTS system galactitol 26.0 1.2E+02 0.0026 16.7 2.9 22 85-106 10-33 (94)
320 cd04585 CBS_pair_ACT_assoc2 Th 25.9 1.3E+02 0.0027 16.6 3.3 16 53-68 101-116 (122)
321 cd02922 FCB2_FMN Flavocytochro 25.8 1.7E+02 0.0036 20.9 4.1 41 90-130 130-170 (344)
322 PRK00301 aat leucyl/phenylalan 25.7 2.1E+02 0.0046 19.2 9.5 88 38-133 115-203 (233)
323 cd07251 Glo_EDI_BRP_like_10 Th 25.6 83 0.0018 17.4 2.4 17 117-133 10-27 (121)
324 PRK09525 lacZ beta-D-galactosi 25.4 4.2E+02 0.009 22.4 7.3 53 82-134 362-414 (1027)
325 PF00376 MerR: MerR family reg 25.4 70 0.0015 14.3 1.6 14 117-130 13-26 (38)
326 PF02679 ComA: (2R)-phospho-3- 25.2 1.6E+02 0.0035 19.8 3.8 43 92-134 85-133 (244)
327 cd06588 PhnB_like Escherichia 25.2 1.5E+02 0.0032 17.1 3.8 26 109-134 4-30 (128)
328 TIGR03632 bact_S11 30S ribosom 25.2 1.5E+02 0.0031 17.0 7.2 53 82-134 37-93 (108)
329 cd04600 CBS_pair_HPP_assoc Thi 25.2 1.3E+02 0.0029 16.7 3.7 18 51-68 101-118 (124)
330 PRK14839 undecaprenyl pyrophos 25.1 1.5E+02 0.0032 20.0 3.5 33 82-114 31-63 (239)
331 cd04589 CBS_pair_CAP-ED_DUF294 25.0 1.3E+02 0.0028 16.4 4.3 27 42-68 79-105 (111)
332 cd03332 LMO_FMN L-Lactate 2-mo 24.9 1.8E+02 0.0039 21.2 4.2 38 91-128 151-188 (383)
333 PRK14840 undecaprenyl pyrophos 24.9 1.5E+02 0.0032 20.1 3.5 34 82-115 44-77 (250)
334 PRK14834 undecaprenyl pyrophos 24.9 1.6E+02 0.0035 19.9 3.7 34 82-115 36-69 (249)
335 PRK14833 undecaprenyl pyrophos 24.7 1.5E+02 0.0033 19.8 3.6 34 82-115 26-59 (233)
336 PRK14832 undecaprenyl pyrophos 24.7 1.4E+02 0.003 20.2 3.4 33 82-114 40-72 (253)
337 cd06422 NTP_transferase_like_1 24.6 1.5E+02 0.0033 19.0 3.6 26 89-114 29-54 (221)
338 PLN02535 glycolate oxidase 24.5 1.9E+02 0.0041 20.9 4.2 25 91-115 137-161 (364)
339 PTZ00129 40S ribosomal protein 24.2 1.8E+02 0.004 17.9 10.7 46 89-134 74-130 (149)
340 TIGR03849 arch_ComA phosphosul 24.2 2.3E+02 0.0049 19.1 4.3 44 91-134 71-120 (237)
341 cd04623 CBS_pair_10 The CBS do 24.2 1.3E+02 0.0029 16.2 4.2 20 49-68 88-107 (113)
342 COG1212 KdsB CMP-2-keto-3-deox 24.1 2.3E+02 0.0051 19.1 4.8 46 89-136 27-72 (247)
343 PF03465 eRF1_3: eRF1 domain 3 24.1 1.6E+02 0.0034 17.0 4.6 35 92-128 70-104 (113)
344 PF06574 FAD_syn: FAD syntheta 24.0 1.9E+02 0.004 17.9 4.0 53 82-134 13-82 (157)
345 PF13669 Glyoxalase_4: Glyoxal 23.9 1.4E+02 0.0031 16.5 3.4 21 115-135 9-30 (109)
346 TIGR03081 metmalonyl_epim meth 23.9 1E+02 0.0022 17.3 2.5 27 106-133 3-30 (128)
347 COG0587 DnaE DNA polymerase II 23.7 2.4E+02 0.0053 24.0 5.1 45 93-137 22-69 (1139)
348 cd04591 CBS_pair_EriC_assoc_eu 23.7 1.4E+02 0.003 16.3 4.3 25 45-69 76-100 (105)
349 PRK14827 undecaprenyl pyrophos 23.4 1.4E+02 0.003 20.9 3.3 32 82-113 89-120 (296)
350 PF01380 SIS: SIS domain SIS d 23.4 1.6E+02 0.0034 16.8 4.2 32 86-118 63-94 (131)
351 PHA02126 hypothetical protein 23.3 51 0.0011 19.2 1.1 58 82-139 66-131 (153)
352 COG1437 CyaB Adenylate cyclase 23.2 1.9E+02 0.0041 18.5 3.6 28 107-135 80-107 (178)
353 PRK14828 undecaprenyl pyrophos 23.1 1.6E+02 0.0034 20.0 3.5 32 82-113 48-80 (256)
354 PRK14835 undecaprenyl pyrophos 23.1 1.5E+02 0.0033 20.4 3.4 33 82-114 63-95 (275)
355 cd04635 CBS_pair_22 The CBS do 23.1 1.5E+02 0.0032 16.4 4.0 25 44-68 91-116 (122)
356 cd00641 GTP_cyclohydro2 GTP cy 23.0 2.2E+02 0.0047 18.3 4.6 44 82-134 125-168 (193)
357 COG0473 LeuB Isocitrate/isopro 23.0 1.3E+02 0.0028 21.5 3.1 43 84-127 10-52 (348)
358 TIGR03534 RF_mod_PrmC protein- 22.9 2.3E+02 0.0049 18.5 5.2 47 91-139 198-245 (251)
359 CHL00041 rps11 ribosomal prote 22.7 1.7E+02 0.0037 17.0 7.2 51 84-134 52-106 (116)
360 PF13704 Glyco_tranf_2_4: Glyc 22.7 1.4E+02 0.0031 16.1 5.1 36 91-126 5-40 (97)
361 TIGR01440 conserved hypothetic 22.7 2.1E+02 0.0046 18.1 4.9 51 86-136 42-95 (172)
362 PRK02983 lysS lysyl-tRNA synth 22.6 2.4E+02 0.0052 23.9 4.9 42 90-134 298-339 (1094)
363 cd04625 CBS_pair_12 The CBS do 22.6 1.4E+02 0.0031 16.1 4.3 20 49-68 87-106 (112)
364 cd04883 ACT_AcuB C-terminal AC 22.6 1.2E+02 0.0026 15.1 3.7 26 106-131 43-69 (72)
365 cd02523 PC_cytidylyltransferas 22.5 1.8E+02 0.0039 18.8 3.7 26 90-115 29-54 (229)
366 cd07245 Glo_EDI_BRP_like_9 Thi 22.3 91 0.002 16.8 2.1 26 107-133 3-29 (114)
367 PF06564 YhjQ: YhjQ protein; 22.3 1.4E+02 0.003 20.1 3.1 44 85-130 10-54 (243)
368 cd04590 CBS_pair_CorC_HlyC_ass 22.2 1.5E+02 0.0032 16.1 4.4 17 52-68 89-105 (111)
369 PRK14838 undecaprenyl pyrophos 22.0 1.8E+02 0.0038 19.6 3.5 33 82-114 32-64 (242)
370 PF07927 YcfA: YcfA-like prote 21.9 1.1E+02 0.0024 14.6 2.4 16 118-133 3-18 (56)
371 PF14520 HHH_5: Helix-hairpin- 21.9 95 0.0021 15.3 1.8 14 87-100 45-58 (60)
372 COG3414 SgaB Phosphotransferas 21.9 1.6E+02 0.0035 16.4 3.3 22 85-106 9-32 (93)
373 cd04606 CBS_pair_Mg_transporte 21.8 1.5E+02 0.0033 16.1 3.6 17 52-68 86-102 (109)
374 COG1832 Predicted CoA-binding 21.7 2E+02 0.0044 17.5 4.7 68 59-130 55-123 (140)
375 cd08359 Glo_EDI_BRP_like_22 Th 21.7 91 0.002 17.3 2.0 17 117-133 13-30 (119)
376 PF06399 GFRP: GTP cyclohydrol 21.6 77 0.0017 17.2 1.4 44 91-134 26-70 (83)
377 cd04803 CBS_pair_15 The CBS do 21.6 1.6E+02 0.0035 16.3 4.0 25 44-68 91-116 (122)
378 PF01070 FMN_dh: FMN-dependent 21.4 2.1E+02 0.0046 20.5 4.0 45 82-130 118-162 (356)
379 PF00106 adh_short: short chai 21.2 1.9E+02 0.0042 17.2 3.5 35 85-123 9-44 (167)
380 cd04599 CBS_pair_GGDEF_assoc2 21.2 1.5E+02 0.0033 15.8 4.2 21 48-68 79-99 (105)
381 cd04181 NTP_transferase NTP_tr 20.9 2.3E+02 0.005 17.8 4.0 28 89-116 28-55 (217)
382 cd00145 POLBc DNA polymerase t 20.8 1.6E+02 0.0035 20.6 3.4 27 87-113 136-162 (323)
383 COG1724 Predicted RNA binding 20.8 1.5E+02 0.0031 15.4 2.3 18 117-134 10-27 (66)
384 cd08351 ChaP_like ChaP, an enz 20.6 1.6E+02 0.0034 16.7 2.9 27 105-132 5-32 (123)
385 cd00218 GlcAT-I Beta1,3-glucur 20.3 2.5E+02 0.0053 18.7 3.8 34 94-127 81-117 (223)
386 PRK09279 pyruvate phosphate di 20.2 2.6E+02 0.0056 23.1 4.5 48 86-134 807-856 (879)
387 cd04594 CBS_pair_EriC_assoc_ar 20.2 1.6E+02 0.0035 15.8 4.4 23 46-68 76-98 (104)
388 smart00278 HhH1 Helix-hairpin- 20.2 83 0.0018 12.4 1.4 14 86-99 7-20 (26)
389 COG1064 AdhP Zn-dependent alco 20.1 3.4E+02 0.0074 19.4 5.2 42 87-132 174-215 (339)
390 COG3623 SgaU Putative L-xylulo 20.0 1.9E+02 0.0042 19.6 3.3 24 88-111 93-116 (287)
391 PRK04531 acetylglutamate kinas 20.0 3.6E+02 0.0079 19.7 7.6 99 20-132 263-367 (398)
392 PF01418 HTH_6: Helix-turn-hel 20.0 69 0.0015 16.8 1.1 18 115-132 47-64 (77)
No 1
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.90 E-value=2.3e-21 Score=113.68 Aligned_cols=129 Identities=25% Similarity=0.324 Sum_probs=100.6
Q ss_pred HHHHHHHhhhhCCCcHHHHHHHHHHh-hcCCceEEEEEECCe-EEEEEEEEeCCCc---eeeEEee----ccccccHHHH
Q 047740 21 VDEIVKMEKKIFPKHESLARSFDEDL-KKKNSGLLYIQIHGQ-VVGYVMYAWPTSL---SASITKL----NYRGQGRGEA 91 (154)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-ivG~~~~~~~~~~---~~~i~~~----~~rg~Gig~~ 91 (154)
++.+..+..+.++.+.+. .....+ ...+..++++.+++. .||.+.+..+... .++|..+ +|||+|||++
T Consensus 27 l~~im~Li~k~lsepyS~--~tyrYf~~~wp~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~a 104 (165)
T KOG3139|consen 27 LADIMRLIDKDLSEPYSI--YTYRYFVPNWPCFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKA 104 (165)
T ss_pred HHHHHHHHhhhcCchhHH--HHHHhcccCCceEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHH
Confidence 344555666666555442 122222 223446677776544 6999999765443 4777777 9999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeecccCCCceEEEEeec
Q 047740 92 LLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYSADRPAYRMYIDF 151 (154)
Q Consensus 92 ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~~~l 151 (154)
|++.+++.++..|+..+.|.+...|.+|.++|+++||+..++...||.++.|++.|.+.+
T Consensus 105 Lvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~~~YYlng~dA~rl~L~~ 164 (165)
T KOG3139|consen 105 LVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFKRDKRLFRYYLNGMDALRLKLFF 164 (165)
T ss_pred HHHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCceEecceeEEEECCcceEEEEeec
Confidence 999999999999999999999999999999999999999999999999999998888765
No 2
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.89 E-value=3.4e-21 Score=116.20 Aligned_cols=138 Identities=23% Similarity=0.349 Sum_probs=102.8
Q ss_pred cccccccccCCCchhhHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCCCceeeEEee---
Q 047740 5 GTVTELQRNSTNWTFVVDEIVKMEKKIFPKHESLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKL--- 81 (154)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~--- 81 (154)
++||+++.+ |++.+..+.......++.. ..+.... ......+.+.+++++||++.+....+ ...+..+
T Consensus 2 ~~iR~~~~~------D~~~l~~l~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~ 72 (146)
T PRK09491 2 NTISSLTPA------DLPAAYHIEQRAHAFPWSE-KTFASNQ-GERYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVD 72 (146)
T ss_pred cchhcCChh------hhHHHHHHHHhcCCCCCCH-HHHHHHH-hcCceEEEEEECCeEEEEEEEEeecC-ceEEEEEEEC
Confidence 578999999 7888888866554433332 2222221 12223344567899999998854322 2333333
Q ss_pred -ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeecccC---CCceEEEEeec
Q 047740 82 -NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYSA---DRPAYRMYIDF 151 (154)
Q Consensus 82 -~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~---~~~~~~m~~~l 151 (154)
+|||+|+|+++++.+++.+.+.++..+.+.|.+.|.+|.+||+|+||+..+..+.++.. ..|.++|.+.|
T Consensus 73 ~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~~~~~d~~~~~~~~ 146 (146)
T PRK09491 73 PDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTIRRNYYPTADGREDAIIMALPL 146 (146)
T ss_pred HHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeeeeeccccCCCCceeEEEEeccC
Confidence 99999999999999999999889999999999999999999999999999988777643 23888998865
No 3
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.88 E-value=1.4e-20 Score=115.29 Aligned_cols=142 Identities=23% Similarity=0.306 Sum_probs=103.2
Q ss_pred CCCCcccccccccCCCchhhHHHHHHHhhhh--CC----CcHHHHHHHHHHhhc-CCceEEEEEECCeEEEEEEEEeCC-
Q 047740 1 MGSNGTVTELQRNSTNWTFVVDEIVKMEKKI--FP----KHESLARSFDEDLKK-KNSGLLYIQIHGQVVGYVMYAWPT- 72 (154)
Q Consensus 1 M~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ivG~~~~~~~~- 72 (154)
|+ .+.+|+++++ |++.+.++.... +. .+....+.+...+.. .+...+++.++|++||++.+....
T Consensus 1 ~~-~i~lr~~~~~------D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~ 73 (162)
T PRK10140 1 MS-EIVIRHAETR------DYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADRPGIKQLVACIDGDVVGHLTIDVQQR 73 (162)
T ss_pred CC-ccEEEecchh------hHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcCCCcEEEEEEECCEEEEEEEEecccc
Confidence 44 5889999998 788888876532 11 111122344444433 334567777899999999986321
Q ss_pred ---CceeeEEee---ccccccHHHHHHHHHHHHHHH-cCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeeccc-CCC--
Q 047740 73 ---SLSASITKL---NYRGQGRGEALLEAAIKKCRT-RTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYS-ADR-- 142 (154)
Q Consensus 73 ---~~~~~i~~~---~~rg~Gig~~ll~~~~~~~~~-~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~-~~~-- 142 (154)
.....++.. +|||+|+|++|++.+++++++ .++..+.+.|.+.|++|++||+|+||+..+..+.++. .+.
T Consensus 74 ~~~~~~~~~~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~~~~~~~~~ 153 (162)
T PRK10140 74 PRRSHVADFGICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYV 153 (162)
T ss_pred cccceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeecccceeeCCeEE
Confidence 122333322 999999999999999999998 4999999999999999999999999999999876643 232
Q ss_pred ceEEEEe
Q 047740 143 PAYRMYI 149 (154)
Q Consensus 143 ~~~~m~~ 149 (154)
|..+|.+
T Consensus 154 d~~~~~~ 160 (162)
T PRK10140 154 DAYYMAR 160 (162)
T ss_pred EEEEEEe
Confidence 7777765
No 4
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.88 E-value=3.9e-21 Score=115.63 Aligned_cols=124 Identities=19% Similarity=0.254 Sum_probs=95.3
Q ss_pred CCcccccccccCCCchhhHHHHHHHhhhhCCC---cHHHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCCC-----c
Q 047740 3 SNGTVTELQRNSTNWTFVVDEIVKMEKKIFPK---HESLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTS-----L 74 (154)
Q Consensus 3 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~-----~ 74 (154)
+++.||+++++ |++.+..+.....+. .......+...+..++..++++.+++++||++.+..... .
T Consensus 2 ~~~~ir~a~~~------D~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~~ 75 (144)
T PRK10146 2 PACELRPATQY------DTDAVYALICELKQAEFDHQAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVNW 75 (144)
T ss_pred CccEEeeCcHh------hHHHHHHHHHHHhcccCCHHHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccch
Confidence 46789999988 788888776544332 122234455555555566777888999999999864211 1
Q ss_pred eeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEee
Q 047740 75 SASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 75 ~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
..++..+ +|||+|+|+.|++++++.|++.|+..+.+.+...|.+|++||+++||+..+
T Consensus 76 ~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~ 137 (144)
T PRK10146 76 IGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSH 137 (144)
T ss_pred hheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhh
Confidence 2344444 999999999999999999999999999999999999999999999998765
No 5
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.88 E-value=5e-21 Score=113.27 Aligned_cols=126 Identities=30% Similarity=0.427 Sum_probs=98.2
Q ss_pred hHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCCCceeeEEee----ccccccHHHHHHHH
Q 047740 20 VVDEIVKMEKKIFPKHESLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKL----NYRGQGRGEALLEA 95 (154)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~----~~rg~Gig~~ll~~ 95 (154)
|++++.++....|+.++. .+.+...+......++++.+++++||++.+..... ...+..+ +|||+|+|++|++.
T Consensus 1 d~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~i~~~~v~~~~rg~G~g~~ll~~ 78 (131)
T TIGR01575 1 DLKAVLEIEAAAFAFPWT-EAQFAEELANYHLCYLLARIGGKVVGYAGVQIVLD-EAHILNIAVKPEYQGQGIGRALLRE 78 (131)
T ss_pred CHHHHHHHHHhhCCCCCC-HHHHHHHhcCCCceEEEEecCCeEEEEEEEEecCC-CeEEEEEEECHHHcCCCHHHHHHHH
Confidence 466778888888876544 34455555545555666677999999999854332 3344444 99999999999999
Q ss_pred HHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeecccCC-CceEEE
Q 047740 96 AIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYSAD-RPAYRM 147 (154)
Q Consensus 96 ~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~-~~~~~m 147 (154)
+++.+++.++..+.+.+.+.|.++++||+++||+..++.+.++..+ .|.++|
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~~~~~~~~~~ 131 (131)
T TIGR01575 79 LIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAIRRNYYPDPGEDAIVM 131 (131)
T ss_pred HHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCccccccccccCCCcccccC
Confidence 9999999999999999999999999999999999999988887665 455554
No 6
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.87 E-value=1.3e-20 Score=123.81 Aligned_cols=142 Identities=15% Similarity=0.211 Sum_probs=109.1
Q ss_pred CCcccccccccCCCchhhHHHHHHHhhhhCCC---cHHHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEe-CCCceeeE
Q 047740 3 SNGTVTELQRNSTNWTFVVDEIVKMEKKIFPK---HESLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAW-PTSLSASI 78 (154)
Q Consensus 3 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~-~~~~~~~i 78 (154)
..+.||+++++ |++++.++....++. +....+.+...+ .++..++++.++|++||++.+.. ......++
T Consensus 114 ~~~~IR~a~~~------D~~~l~~L~~~v~~~~~~~~~~~~~l~~~~-~~~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI 186 (266)
T TIGR03827 114 EGFTLRIATED------DADAMAALYRKVFPTYPFPIHDPAYLLETM-KSNVVYFGVEDGGKIIALASAEMDPENGNAEM 186 (266)
T ss_pred CceEEEECCHH------HHHHHHHHHHHHhccCCCCccCHHHHHHHh-cCCcEEEEEEECCEEEEEEEEecCCCCCcEEE
Confidence 45788999888 788888887776532 222223333333 34556677888999999998743 23345666
Q ss_pred Eee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeecc-cCC--CceEEEEeec
Q 047740 79 TKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYY-SAD--RPAYRMYIDF 151 (154)
Q Consensus 79 ~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~-~~~--~~~~~m~~~l 151 (154)
..+ +|||+|+|++|++.+++.+++.|+..+++.+...|.+++++|+|+||+..++..+.. ..+ .|+.+|.|.|
T Consensus 187 ~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l~n~~~i~G~~~d~~i~~k~l 266 (266)
T TIGR03827 187 TDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFARLGYAYGGTLVNNTNISGGFESMNIWYKQL 266 (266)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHHcCCccccEEeecceecCCcccceeeeecC
Confidence 655 999999999999999999999999999999999999999999999999999987643 333 3888888765
No 7
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.85 E-value=2.6e-19 Score=111.39 Aligned_cols=145 Identities=14% Similarity=0.185 Sum_probs=104.2
Q ss_pred CCcccccccccCCCchhhHHHHHHHhh--hh-------CCC----cHHHHHHHHHHh---hcCCceEEEEEECCeEEEEE
Q 047740 3 SNGTVTELQRNSTNWTFVVDEIVKMEK--KI-------FPK----HESLARSFDEDL---KKKNSGLLYIQIHGQVVGYV 66 (154)
Q Consensus 3 ~~~~ir~~~~~~~~~~~~~~~~~~~~~--~~-------~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~ivG~~ 66 (154)
..+.+|+++++ |++.+..+.. .. ++. .....+.+.... .......+++..+|++||++
T Consensus 9 ~rl~Lr~~~~~------D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~ 82 (179)
T PRK10151 9 ESLELHAVDES------HVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVL 82 (179)
T ss_pred CcEEEEeCCHH------HHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEE
Confidence 46788999988 5666666642 11 121 122223333221 12222356666789999999
Q ss_pred EEEeC--CCceeeEEee---ccccccHHHHHHHHHHHHHHHc-CCcEEEEEEccCChhHHHHHHHcCCeEeeEeeec-cc
Q 047740 67 MYAWP--TSLSASITKL---NYRGQGRGEALLEAAIKKCRTR-TVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGY-YS 139 (154)
Q Consensus 67 ~~~~~--~~~~~~i~~~---~~rg~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~-~~ 139 (154)
.+... ....+.++.. +|||+|+|+++++.+++++++. +++++.+.|.+.|++|+++++|+||+..++.+.. +.
T Consensus 83 ~l~~~~~~~~~~~ig~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~~~~~ 162 (179)
T PRK10151 83 SFNRIEPLNKTAYIGYWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQAEYL 162 (179)
T ss_pred EEEeeccCCCceEEEEEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEeccceEE
Confidence 88542 2345666665 9999999999999999999976 8999999999999999999999999999998654 33
Q ss_pred CC--CceEEEEeecCC
Q 047740 140 AD--RPAYRMYIDFDS 153 (154)
Q Consensus 140 ~~--~~~~~m~~~l~~ 153 (154)
.+ .|.++|.+.+.+
T Consensus 163 ~g~~~D~~~~~~~~~~ 178 (179)
T PRK10151 163 NGAYDDVNLYARIIDS 178 (179)
T ss_pred CCEEEEEEEEEEeecC
Confidence 34 388899887754
No 8
>PRK03624 putative acetyltransferase; Provisional
Probab=99.85 E-value=1.1e-19 Score=108.69 Aligned_cols=124 Identities=19% Similarity=0.286 Sum_probs=93.2
Q ss_pred CcccccccccCCCchhhHHHHHHHhhhhCC-CcH-HHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCCCceeeEEee
Q 047740 4 NGTVTELQRNSTNWTFVVDEIVKMEKKIFP-KHE-SLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKL 81 (154)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~ 81 (154)
++.+|+++++ |++++.++...... ..+ .....+......+...++++.+++++||++.+.... ....+..+
T Consensus 2 ~~~ir~~~~~------d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~-~~~~i~~i 74 (140)
T PRK03624 2 AMEIRVFRQA------DFEAVIALWERCDLTRPWNDPEMDIERKLNHDPSLFLVAEVGGEVVGTVMGGYDG-HRGWAYYL 74 (140)
T ss_pred ceEEEEcccc------cHHHHHHHHHhcCCCcchhhHHHHHHHHhcCCCceEEEEEcCCcEEEEEEeeccC-CCceEEEE
Confidence 5788999998 78888877655421 111 111233333444455677788899999999875322 22333333
Q ss_pred ----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 82 ----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 82 ----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
+|||+|+|++|++.+++++++.|++.+.+.+.+.|++++++|+|+||+..+..
T Consensus 75 ~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~~ 131 (140)
T PRK03624 75 AVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQDRI 131 (140)
T ss_pred EECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCccccEE
Confidence 99999999999999999999999999999999999999999999999987754
No 9
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.85 E-value=1.6e-19 Score=113.38 Aligned_cols=124 Identities=18% Similarity=0.279 Sum_probs=90.4
Q ss_pred cccccccccCCCchhhHHHHHHHhhhhCCC---------cHHHHHHH----HHHhhcC-CceEE-EEEECCeEEEEEEEE
Q 047740 5 GTVTELQRNSTNWTFVVDEIVKMEKKIFPK---------HESLARSF----DEDLKKK-NSGLL-YIQIHGQVVGYVMYA 69 (154)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~----~~~~~~~-~~~~~-~~~~~~~ivG~~~~~ 69 (154)
+.||+++++ |++.+.++....+.. +......+ ....... ....+ +...+|++||++.+.
T Consensus 44 ~~lR~~~~~------D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~ 117 (191)
T TIGR02382 44 PGARVATET------DIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLR 117 (191)
T ss_pred CcceeCChh------hHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEE
Confidence 578888988 788888887665321 11111111 1222222 22233 344588999999986
Q ss_pred eCCCceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 70 WPTSLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 70 ~~~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
.......+++.+ +|||+|+|++|++++++++++.|+..+.+.|.++|.+|++||+|+||+..++.
T Consensus 118 ~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~ 186 (191)
T TIGR02382 118 ELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIESTA 186 (191)
T ss_pred ecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccccce
Confidence 443334555554 99999999999999999999999999999999999999999999999988865
No 10
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=1.6e-19 Score=108.84 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=106.8
Q ss_pred cccccccccCCCchhhHHHHHHHhhhhCC----------CcHHHHHHHHHHhhcCCceEEEEEEC-CeEEEEEEEEeCCC
Q 047740 5 GTVTELQRNSTNWTFVVDEIVKMEKKIFP----------KHESLARSFDEDLKKKNSGLLYIQIH-GQVVGYVMYAWPTS 73 (154)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ivG~~~~~~~~~ 73 (154)
+.||+.+.. |++.+..+++.... ........+...........+++.++ |+++|++.+....+
T Consensus 2 ~~ir~~~~~------Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~ 75 (169)
T COG1247 2 MEIRPATAA------DLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRE 75 (169)
T ss_pred cEEecChHH------hHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccC
Confidence 468888888 79999998876542 11211222223333334466667654 99999999975544
Q ss_pred ceeeEEee--------ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeec-ccCCC--
Q 047740 74 LSASITKL--------NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGY-YSADR-- 142 (154)
Q Consensus 74 ~~~~i~~~--------~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~-~~~~~-- 142 (154)
...+.+.+ +.||+|+|++|++.+++.+...|+..+...+.++|.+|+++++++||+..+..+.. +..+.
T Consensus 76 r~ay~~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~vg~k~g~wl 155 (169)
T COG1247 76 RPAYRHTVELSIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASIALHEKLGFEEVGTFPEVGDKFGRWL 155 (169)
T ss_pred ccccceEEEEEEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHHCCCEEeccccccccccceEE
Confidence 43332222 99999999999999999999999999999999999999999999999999988765 33343
Q ss_pred ceEEEEeecCC
Q 047740 143 PAYRMYIDFDS 153 (154)
Q Consensus 143 ~~~~m~~~l~~ 153 (154)
|.++|.+.|..
T Consensus 156 d~~~~~~~l~~ 166 (169)
T COG1247 156 DLVLMQLLLEE 166 (169)
T ss_pred eeeeeehhhcc
Confidence 88999888754
No 11
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.85 E-value=7.1e-19 Score=107.04 Aligned_cols=129 Identities=22% Similarity=0.383 Sum_probs=91.6
Q ss_pred cccccccCCCchhhHHHHHHHhhhh-----CCC-----cHHHHHHHHHHh-hcCCceEEEEEE-CCeEEEEEEEEeCC--
Q 047740 7 VTELQRNSTNWTFVVDEIVKMEKKI-----FPK-----HESLARSFDEDL-KKKNSGLLYIQI-HGQVVGYVMYAWPT-- 72 (154)
Q Consensus 7 ir~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~-~~~ivG~~~~~~~~-- 72 (154)
||+++++ |++++..+.... +.. .....+.+.... ..+....+++.+ +|++||++.+....
T Consensus 1 IR~~~~~------D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~ 74 (155)
T PF13420_consen 1 IRPATEE------DLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPY 74 (155)
T ss_dssp EEE--GG------GHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSG
T ss_pred CCCCcHH------HHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeecc
Confidence 6888888 788877776431 111 111222333332 234556666666 99999999997532
Q ss_pred CceeeEEee---ccccccHHHHHHHHHHHHH-HHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeecccCC
Q 047740 73 SLSASITKL---NYRGQGRGEALLEAAIKKC-RTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYSAD 141 (154)
Q Consensus 73 ~~~~~i~~~---~~rg~Gig~~ll~~~~~~~-~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~ 141 (154)
.....++.+ ++|++|+|+.|+..++++| .+.|++++.+.|.+.|++|++||+++||+..++.+.+....
T Consensus 75 ~~~~~~~~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~~~~~~ 147 (155)
T PF13420_consen 75 NHTAELSIYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGELKDHIFIN 147 (155)
T ss_dssp TTEEEEEEEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEEEEEEEET
T ss_pred CCEEEEeeEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEEecEEEEC
Confidence 345555444 8999999999999999999 77799999999999999999999999999999998765433
No 12
>PTZ00330 acetyltransferase; Provisional
Probab=99.83 E-value=6.6e-19 Score=106.25 Aligned_cols=124 Identities=17% Similarity=0.271 Sum_probs=86.5
Q ss_pred CCCCcccccccccCCCchhhHHHHHHHhhhhCCCcHHHH---HHHHHHhhcCC--ceEEEEEECCeEEEEEEEEeCC---
Q 047740 1 MGSNGTVTELQRNSTNWTFVVDEIVKMEKKIFPKHESLA---RSFDEDLKKKN--SGLLYIQIHGQVVGYVMYAWPT--- 72 (154)
Q Consensus 1 M~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~ivG~~~~~~~~--- 72 (154)
|+..++||+++++ |++++.++............ ..+........ ...+++..+|++||++.+....
T Consensus 3 ~~~~~~ir~~~~~------D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 76 (147)
T PTZ00330 3 MSGSLELRDLEEG------DLGSVLELLSHLTSAPALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFT 76 (147)
T ss_pred CcceEEEEEcccc------cHHHHHHHHHHhcCCCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccc
Confidence 6677899999999 68888877655433221111 12222211122 2345555689999999875321
Q ss_pred --C-ceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeE
Q 047740 73 --S-LSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTL 133 (154)
Q Consensus 73 --~-~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~ 133 (154)
+ ...++..+ +|||+|+|++|++.+++++++.++..+.+.+ |.+|++||+++||+....
T Consensus 77 ~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~---n~~a~~~y~k~GF~~~~~ 141 (147)
T PTZ00330 77 RGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDC---TEDMVAFYKKLGFRACER 141 (147)
T ss_pred cCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEec---ChHHHHHHHHCCCEEece
Confidence 1 12344444 9999999999999999999999988887764 789999999999998764
No 13
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.83 E-value=2.2e-18 Score=107.88 Aligned_cols=142 Identities=18% Similarity=0.287 Sum_probs=100.9
Q ss_pred CCcccccccccCCCchhhHHHHHHHhhhh-----C-CCcH----HHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCC
Q 047740 3 SNGTVTELQRNSTNWTFVVDEIVKMEKKI-----F-PKHE----SLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPT 72 (154)
Q Consensus 3 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~ 72 (154)
..+.+|+++++ |++.+.++.... + ..+. ...+.+...........+++..+|++||++.+....
T Consensus 5 ~~l~lR~~~~~------D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~ 78 (186)
T PRK15130 5 HSVKLRPLERE------DLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEIN 78 (186)
T ss_pred CeeEEecCCHH------HHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEECCEEEEEEEEEeec
Confidence 35789999998 677777764322 1 1111 111122333334445567777899999999885432
Q ss_pred --CceeeEEee---ccccccHHHHHHHHHHHHHHHc-CCcEEEEEEccCChhHHHHHHHcCCeEeeEeeeccc-CCC--c
Q 047740 73 --SLSASITKL---NYRGQGRGEALLEAAIKKCRTR-TVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYS-ADR--P 143 (154)
Q Consensus 73 --~~~~~i~~~---~~rg~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~-~~~--~ 143 (154)
.....++.. +|||+|+|+++++.+++++++. ++.++.+.|...|.+|+++|+|+||+..+..+..+. ++. |
T Consensus 79 ~~~~~~~~~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~~~~~~~~g~~~d 158 (186)
T PRK15130 79 HVHRRAEFQIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGELIHEFFINGEYRN 158 (186)
T ss_pred CCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEEEeheEEECCEEEE
Confidence 223344433 9999999999999999999976 999999999999999999999999999998865543 333 6
Q ss_pred eEEEEee
Q 047740 144 AYRMYID 150 (154)
Q Consensus 144 ~~~m~~~ 150 (154)
.+.|.+.
T Consensus 159 ~~~~~~~ 165 (186)
T PRK15130 159 TIRMCIF 165 (186)
T ss_pred EEEEEee
Confidence 7777654
No 14
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.83 E-value=1.9e-18 Score=108.86 Aligned_cols=142 Identities=13% Similarity=0.137 Sum_probs=98.6
Q ss_pred CCcccccccccCCCchhhHHHHHHHhhh--hC----CCc--------HHH---HHHHHHHhhcCCceEEEEEE--CCeEE
Q 047740 3 SNGTVTELQRNSTNWTFVVDEIVKMEKK--IF----PKH--------ESL---ARSFDEDLKKKNSGLLYIQI--HGQVV 63 (154)
Q Consensus 3 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~--~~----~~~--------~~~---~~~~~~~~~~~~~~~~~~~~--~~~iv 63 (154)
..+.||+++++ |.+.+..+... .+ .+. ... ...+......+....+++.+ ++++|
T Consensus 16 ~rl~LR~~~~~------Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i 89 (194)
T PRK10809 16 DRLVVRLVHER------DAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEII 89 (194)
T ss_pred CcEEEEeCCHH------HHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeEE
Confidence 34778999988 67777776442 11 100 000 11122222233333444433 67999
Q ss_pred EEEEEEeCCC---ceeeEEee---ccccccHHHHHHHHHHHHHHHc-CCcEEEEEEccCChhHHHHHHHcCCeEeeEeee
Q 047740 64 GYVMYAWPTS---LSASITKL---NYRGQGRGEALLEAAIKKCRTR-TVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQG 136 (154)
Q Consensus 64 G~~~~~~~~~---~~~~i~~~---~~rg~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~ 136 (154)
|.+.+..... ....++.. +|||+|+|+++++.+++++++. |++++.+.|.+.|.+|+++|+|+||+..+..+.
T Consensus 90 G~i~l~~~~~~~~~~~eig~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~~~ 169 (194)
T PRK10809 90 GVANFSNVVRGSFHACYLGYSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEGYAKD 169 (194)
T ss_pred EEEEEEeecCCCeeeEEEEEEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEeeecc
Confidence 9999864321 23455554 9999999999999999999986 999999999999999999999999999998876
Q ss_pred ccc-CC--CceEEEEee
Q 047740 137 YYS-AD--RPAYRMYID 150 (154)
Q Consensus 137 ~~~-~~--~~~~~m~~~ 150 (154)
++. .+ .|.++|.+.
T Consensus 170 ~~~~~g~~~d~~~~~~~ 186 (194)
T PRK10809 170 YLLIDGQWRDHVLTALT 186 (194)
T ss_pred ccccCCeEEEEEEeeee
Confidence 543 34 377787764
No 15
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.83 E-value=6.1e-19 Score=102.49 Aligned_cols=131 Identities=20% Similarity=0.206 Sum_probs=97.0
Q ss_pred CCcccccccccC-CCchhhHHHHHHHhhhhCCCcHHHHHHHHHH-hhc-CCceEEEEEE---CCeEEEEEEEEeC-----
Q 047740 3 SNGTVTELQRNS-TNWTFVVDEIVKMEKKIFPKHESLARSFDED-LKK-KNSGLLYIQI---HGQVVGYVMYAWP----- 71 (154)
Q Consensus 3 ~~~~ir~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~---~~~ivG~~~~~~~----- 71 (154)
+.++||.+++.| +.+...+.++.+++.-..+.... ...+... +.+ +-..+.++.. ++.++|++.+.+.
T Consensus 2 ~~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~t-e~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~ 80 (163)
T KOG3216|consen 2 DNIRIRLATPKDCEDILRLIKELAEFEKLEDQVEAT-EENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWL 80 (163)
T ss_pred CceEEEecCcccHHHHHHHHHHHHHHHHhccchhhc-hhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeeccccccc
Confidence 468999999996 44555555555555444443333 3444443 233 3344444443 7899999988642
Q ss_pred CCceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 72 TSLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 72 ~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
.....++..+ +|||+|+|+.|++.+.+.|.+.|+.++.+.|..-|.+|+.||++.|++.....
T Consensus 81 ~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k~gaq~l~~W 147 (163)
T KOG3216|consen 81 GKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEKVGAQDLKEW 147 (163)
T ss_pred ccceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHHhCcccccee
Confidence 2245667776 99999999999999999999999999999999999999999999999988764
No 16
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.83 E-value=1.6e-18 Score=109.10 Aligned_cols=125 Identities=18% Similarity=0.311 Sum_probs=89.2
Q ss_pred cccccccccCCCchhhHHHHHHHhhhhCC---------CcHHHHHHHHHHh----hcC-CceEEEEE-ECCeEEEEEEEE
Q 047740 5 GTVTELQRNSTNWTFVVDEIVKMEKKIFP---------KHESLARSFDEDL----KKK-NSGLLYIQ-IHGQVVGYVMYA 69 (154)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~----~~~-~~~~~~~~-~~~~ivG~~~~~ 69 (154)
..||+++++ |++.+.++....+. ........+..++ ... ....+++. ++|++||++.+.
T Consensus 47 ~~iR~a~~~------D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~ 120 (194)
T PRK10975 47 TGARVATET------DIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLR 120 (194)
T ss_pred CCcccCCcc------cHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEE
Confidence 467788877 67777777655432 1111112222221 111 22344444 468999999986
Q ss_pred eCCCceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEee
Q 047740 70 WPTSLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQ 135 (154)
Q Consensus 70 ~~~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 135 (154)
.......++..+ +|||+|+|++|++.+++++++.|++.+.+.|.+.|++|++||+|+||+..++.-
T Consensus 121 ~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~~ 190 (194)
T PRK10975 121 ELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANIESTAY 190 (194)
T ss_pred ecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEEEe
Confidence 544444555544 999999999999999999999999999999999999999999999999998754
No 17
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.83 E-value=5.5e-18 Score=102.85 Aligned_cols=123 Identities=25% Similarity=0.366 Sum_probs=89.7
Q ss_pred ccccc-ccCCCchhhHHHHHHHhhhh----C---CCcHHHHHHHHHHhh-cCCceEEEEEECCeEEEEEEEEeC------
Q 047740 7 VTELQ-RNSTNWTFVVDEIVKMEKKI----F---PKHESLARSFDEDLK-KKNSGLLYIQIHGQVVGYVMYAWP------ 71 (154)
Q Consensus 7 ir~~~-~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ivG~~~~~~~------ 71 (154)
+|+++ .+ |++.+.++.+.. + .......+.+...+. .+....+++..+|+++|++.+...
T Consensus 1 ~R~a~~~~------Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~ 74 (152)
T PF13523_consen 1 LRPATTPD------DLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDA 74 (152)
T ss_dssp EEE---GG------GHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS--
T ss_pred CeeCccHH------HHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccC
Confidence 57888 77 788888886543 1 112222344444553 556678889999999999988641
Q ss_pred CCceeeEEee----ccccccHHHHHHHHHHHHHHHc-CCcEEEEEEccCChhHHHHHHHcCCeEeeEee
Q 047740 72 TSLSASITKL----NYRGQGRGEALLEAAIKKCRTR-TVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQ 135 (154)
Q Consensus 72 ~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 135 (154)
.+....+..+ ++||+|+|+.++..+++.+++. ++..+.+.+.++|.+|+++|+|+||+.+++..
T Consensus 75 ~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~ 143 (152)
T PF13523_consen 75 DDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFE 143 (152)
T ss_dssp -TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEEE
T ss_pred CCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEEE
Confidence 2233444544 9999999999999999999988 89999999999999999999999999999875
No 18
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.82 E-value=3.2e-19 Score=110.75 Aligned_cols=140 Identities=29% Similarity=0.442 Sum_probs=108.7
Q ss_pred CcccccccccCCCchhhHH--HHHHHhhhhCCC--cHHHHHHHHHHhhcCCceEEEEEEC---C----eEEEEEEEEeCC
Q 047740 4 NGTVTELQRNSTNWTFVVD--EIVKMEKKIFPK--HESLARSFDEDLKKKNSGLLYIQIH---G----QVVGYVMYAWPT 72 (154)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~----~ivG~~~~~~~~ 72 (154)
...+++++.. |+. .+..+....+.. ++. ...+...+...+...+++..+ + +++|++......
T Consensus 11 ~~~ir~~~~~------d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~ 83 (177)
T COG0456 11 KVTIREAINK------DLLDVALAALEARTFDIRLPWS-REYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVD 83 (177)
T ss_pred ceehhhhhhc------ccchHHHHHHhhhcCCCCCcch-HHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEec
Confidence 3567777777 566 777777777774 344 466777777677777777653 3 599999884222
Q ss_pred C-----ceeeEEee----ccccccHHHHHHHHHHHHHHHcCC-cEEEEEEccCChhHHHHHHHcCCeEeeEeeecccCCC
Q 047740 73 S-----LSASITKL----NYRGQGRGEALLEAAIKKCRTRTV-LRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYSADR 142 (154)
Q Consensus 73 ~-----~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~-~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~~ 142 (154)
+ ...+|..+ +|||+|+|++|++++++.+.+.+. ..+.+.|.++|.+|++||+++||+..++...||.++.
T Consensus 84 ~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~~yy~~~~ 163 (177)
T COG0456 84 GRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIRKNYYADGN 163 (177)
T ss_pred CCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHHcCCEEEeeehhhccCCc
Confidence 2 15566666 999999999999999999999986 8999999999999999999999999999999998876
Q ss_pred c-eEEEEee
Q 047740 143 P-AYRMYID 150 (154)
Q Consensus 143 ~-~~~m~~~ 150 (154)
+ ...|.+.
T Consensus 164 ~~a~~~~~~ 172 (177)
T COG0456 164 GDALLMLKM 172 (177)
T ss_pred chhHHHHHh
Confidence 4 5555543
No 19
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.82 E-value=3.1e-18 Score=104.32 Aligned_cols=135 Identities=19% Similarity=0.200 Sum_probs=95.5
Q ss_pred ccccccccCCCchhhHHHHHHHhhhh----C--C---CcHHHHHHHHHHh-hcCCceEEEEEECCeEEEEEEEEeCC--C
Q 047740 6 TVTELQRNSTNWTFVVDEIVKMEKKI----F--P---KHESLARSFDEDL-KKKNSGLLYIQIHGQVVGYVMYAWPT--S 73 (154)
Q Consensus 6 ~ir~~~~~~~~~~~~~~~~~~~~~~~----~--~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ivG~~~~~~~~--~ 73 (154)
.+|+++++ |++.+.++.... + . .+......+.... .......+++..+|++||++.+.... .
T Consensus 2 ~lr~~~~~------D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~~ 75 (156)
T TIGR03585 2 NFTPLNSE------ELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLVH 75 (156)
T ss_pred CcccCCHH------HHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChhh
Confidence 47888888 677777764321 1 1 1112122333333 33344567777899999999996433 2
Q ss_pred ceeeEEee---ccccccHHHHHHHHHHHHHHHc-CCcEEEEEEccCChhHHHHHHHcCCeEeeEeeeccc-CCC--ceEE
Q 047740 74 LSASITKL---NYRGQGRGEALLEAAIKKCRTR-TVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYS-ADR--PAYR 146 (154)
Q Consensus 74 ~~~~i~~~---~~rg~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~-~~~--~~~~ 146 (154)
....++.. .+| +|+|++++..+++++++. +++.+.+.|.+.|.+|++||+|+||+..+..+.+.. ++. |.++
T Consensus 76 ~~~~~g~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~~~~~g~~~d~~~ 154 (156)
T TIGR03585 76 KSAFWGIYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQGIFKEGEYYDVLL 154 (156)
T ss_pred CeEEEEEEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeeeehhheeECCeEEEEEE
Confidence 33444433 778 999999999999999975 999999999999999999999999999998876533 333 5555
Q ss_pred E
Q 047740 147 M 147 (154)
Q Consensus 147 m 147 (154)
|
T Consensus 155 ~ 155 (156)
T TIGR03585 155 M 155 (156)
T ss_pred e
Confidence 4
No 20
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.82 E-value=9.7e-19 Score=106.51 Aligned_cols=122 Identities=15% Similarity=0.125 Sum_probs=87.7
Q ss_pred cccccccCCCchhhHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCceEEEEE-ECCeEEEEEEEEeC--CCceeeEEee--
Q 047740 7 VTELQRNSTNWTFVVDEIVKMEKKIFPKHESLARSFDEDLKKKNSGLLYIQ-IHGQVVGYVMYAWP--TSLSASITKL-- 81 (154)
Q Consensus 7 ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ivG~~~~~~~--~~~~~~i~~~-- 81 (154)
||+++.+ |++++.++..............+...........+++. +++++||++.+... ......+..+
T Consensus 1 IR~~~~~------D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V 74 (157)
T TIGR02406 1 FRPPRIE------DGAGIWELVKDCPPLDLNSSYAYLLLCTDFADTSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAV 74 (157)
T ss_pred CCCCccc------cHHHHHHHHHhCCCCCcccceehhhhhhhcCCcEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEE
Confidence 5777887 78999988877643221111112222222334456666 47899999876432 2233444444
Q ss_pred --ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 82 --NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 82 --~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
++||+|+|++|++.++++++..++..+.+.|.++|++|++||+|+||+.....
T Consensus 75 ~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~~~ 129 (157)
T TIGR02406 75 DPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFKALARRRGVHL 129 (157)
T ss_pred ChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHhCcccCCCe
Confidence 99999999999999999999999999999999999999999999999875543
No 21
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.81 E-value=1.8e-19 Score=105.24 Aligned_cols=141 Identities=22% Similarity=0.282 Sum_probs=112.0
Q ss_pred cccccccccCCCchhhHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCceEEEEE-ECCeEEEEEEEEeC-----CCceeeE
Q 047740 5 GTVTELQRNSTNWTFVVDEIVKMEKKIFPKHESLARSFDEDLKKKNSGLLYIQ-IHGQVVGYVMYAWP-----TSLSASI 78 (154)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ivG~~~~~~~-----~~~~~~i 78 (154)
+.||.++++ |+-.+....-.+.|........+.. ....+...+++. ++|+|||++...-. ....++|
T Consensus 2 m~iR~ar~~------DL~~mQ~~Nl~~lpENyqmkyylyh-~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhI 74 (193)
T KOG3235|consen 2 MNIRRARPD------DLLEMQHCNLLNLPENYQMKYYLYH-GLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHI 74 (193)
T ss_pred cccccCCHH------HHHHhhhcccccCcHHHhHHHHHHh-hcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCee
Confidence 467888888 6777776666666655555444444 334455667777 48999999987532 1224666
Q ss_pred Eee----ccccccHHHHHHHHHHHHHHHc-CCcEEEEEEccCChhHHHHHH-HcCCeEeeEeeecccCCCceEEEEeecC
Q 047740 79 TKL----NYRGQGRGEALLEAAIKKCRTR-TVLRKTLHVDPLRTPAVNLYK-KFGFQVDTLIQGYYSADRPAYRMYIDFD 152 (154)
Q Consensus 79 ~~~----~~rg~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~a~~~y~-~~Gf~~~~~~~~~~~~~~~~~~m~~~l~ 152 (154)
..+ .||+.|+|+.|+........+- +.+.+.+.|..+|.+|+.+|+ .+||+..+..+.||.+|+|++-|.++|+
T Consensus 75 tSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve~kYYadGedAyaM~~~L~ 154 (193)
T KOG3235|consen 75 TSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVEPKYYADGEDAYAMRKDLS 154 (193)
T ss_pred EEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEeecccccccccHHHHHHHHHHH
Confidence 666 9999999999999988888877 899999999999999999999 8999999999999999999999998874
No 22
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.79 E-value=3.8e-18 Score=93.27 Aligned_cols=74 Identities=39% Similarity=0.600 Sum_probs=66.7
Q ss_pred EEECCeEEEEEEEEeCCC-----ceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHc
Q 047740 56 IQIHGQVVGYVMYAWPTS-----LSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKF 126 (154)
Q Consensus 56 ~~~~~~ivG~~~~~~~~~-----~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~ 126 (154)
++++|++||++.+..... ...++..+ +|||+|+|+.|++++++.+++.|+..+.+.+.++|.++++||+|+
T Consensus 1 ~~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 1 AEEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp EEETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHT
T ss_pred CcCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHc
Confidence 467999999999975332 46777777 999999999999999999999999999999999999999999999
Q ss_pred CCe
Q 047740 127 GFQ 129 (154)
Q Consensus 127 Gf~ 129 (154)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 23
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.77 E-value=2.5e-17 Score=99.74 Aligned_cols=122 Identities=15% Similarity=0.209 Sum_probs=81.4
Q ss_pred CCcccccccccCCCchhhHH-HHHHHhhhhCCC-cH---HHHHHHHHHhhcC-CceEEEEEE--CCeEEEEEEEEeC---
Q 047740 3 SNGTVTELQRNSTNWTFVVD-EIVKMEKKIFPK-HE---SLARSFDEDLKKK-NSGLLYIQI--HGQVVGYVMYAWP--- 71 (154)
Q Consensus 3 ~~~~ir~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~---~~~~~~~~~~~~~-~~~~~~~~~--~~~ivG~~~~~~~--- 71 (154)
..+.||+++++ |.+ .+..+.....+. +. .....+....... ....+++.+ ++++||++.+...
T Consensus 5 ~~~~ir~~~~~------D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~ 78 (150)
T PLN02706 5 EKFKVRRLEIS------DKSKGFLELLQQLTVVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKF 78 (150)
T ss_pred CceEEeEhhhc------ccchHHHHHHHhccCCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeec
Confidence 45789999988 444 355554433221 11 1222322222222 233445555 6899999887421
Q ss_pred C---CceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeE
Q 047740 72 T---SLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTL 133 (154)
Q Consensus 72 ~---~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~ 133 (154)
. ....++..+ +|||+|+|++|++.++++|++.|++++.+.+.++|. +||+|+||+..+.
T Consensus 79 ~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~---~~y~k~GF~~~g~ 144 (150)
T PLN02706 79 IRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENK---AFYEKCGYVRKEI 144 (150)
T ss_pred ccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccH---HHHHHCcCEEehh
Confidence 1 122333333 999999999999999999999999999999999985 5999999998773
No 24
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.77 E-value=3.3e-17 Score=100.86 Aligned_cols=119 Identities=18% Similarity=0.172 Sum_probs=85.8
Q ss_pred CCcccccccccCCCchhhHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCceEEEEE-ECCeEEEEEEEEeCCCceeeEEee
Q 047740 3 SNGTVTELQRNSTNWTFVVDEIVKMEKKIFPKHESLARSFDEDLKKKNSGLLYIQ-IHGQVVGYVMYAWPTSLSASITKL 81 (154)
Q Consensus 3 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ivG~~~~~~~~~~~~~i~~~ 81 (154)
+++++|+++++ |.+.+..+..................+. ....++++. +++++||++.+.........+..+
T Consensus 4 ~~i~iR~a~~~------D~~~i~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~va~~~~~~iiG~~~~~~~~~~~~~i~~l 76 (169)
T PRK07922 4 GAITVRRARTS------DVPAIKRLVDPYAQGRILLEKNLVTLYE-AVQEFWVAEHLDGEVVGCGALHVMWEDLAEIRTV 76 (169)
T ss_pred CCceeecCCHh------hHHHHHHHHHHHhhcCccccchHHHHHh-hcCcEEEEEecCCcEEEEEEEeecCCCceEEEEE
Confidence 46889999999 7888888765543221111111222222 223466777 899999999886444444556544
Q ss_pred ----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeE
Q 047740 82 ----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTL 133 (154)
Q Consensus 82 ----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~ 133 (154)
+|||+|+|++|++++++++++.|+..+.+.+. +++||+|+||+..+.
T Consensus 77 ~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~-----~~~fY~k~GF~~~~~ 127 (169)
T PRK07922 77 AVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF-----EVEFFARHGFVEIDG 127 (169)
T ss_pred EECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec-----cHHHHHHCCCEECcc
Confidence 99999999999999999999999999988764 368999999999864
No 25
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.77 E-value=5e-17 Score=115.86 Aligned_cols=125 Identities=22% Similarity=0.185 Sum_probs=94.8
Q ss_pred Ccccccc-cccCCCchhhHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCceEEEEEE--CCeEEEEEEEEe------CCCc
Q 047740 4 NGTVTEL-QRNSTNWTFVVDEIVKMEKKIFPKHESLARSFDEDLKKKNSGLLYIQI--HGQVVGYVMYAW------PTSL 74 (154)
Q Consensus 4 ~~~ir~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ivG~~~~~~------~~~~ 74 (154)
.+.||++ ++. |++.+..++......++.. ..+..........++++.+ +|++||++.+.. ....
T Consensus 82 g~~IR~~~~~~------D~~~I~~L~~~~~~~p~~~-~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~ 154 (547)
T TIGR03103 82 GFTVRRLRGPA------DVDAINRLYAARGMVPVRV-DFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEH 154 (547)
T ss_pred CcEEEeCCChh------HHHHHHHHHHhcCCCCCCH-HHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCCC
Confidence 4778887 455 7999999988765433332 2333344444556777775 699999987531 1112
Q ss_pred eeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEee
Q 047740 75 SASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQ 135 (154)
Q Consensus 75 ~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 135 (154)
...++.+ +|||+|+|++|++++++++++.|+..+.+.|..+|.+|++||+|+||+.++...
T Consensus 155 ~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~ 219 (547)
T TIGR03103 155 GSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIPVFA 219 (547)
T ss_pred CeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEE
Confidence 3455555 999999999999999999999999999999999999999999999999887654
No 26
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.76 E-value=8.7e-17 Score=94.72 Aligned_cols=114 Identities=24% Similarity=0.382 Sum_probs=83.1
Q ss_pred ccccccccCCCchhhHHHHHHHhhhhCCCcHHHHH--HHHHHhhcCCceEEEEEECCeEEEEEEEEeC----CCc---ee
Q 047740 6 TVTELQRNSTNWTFVVDEIVKMEKKIFPKHESLAR--SFDEDLKKKNSGLLYIQIHGQVVGYVMYAWP----TSL---SA 76 (154)
Q Consensus 6 ~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~----~~~---~~ 76 (154)
+||+++++ |.+++.++...+|+......+ ....... .+..++++.++|++||.+.+.+. .+. ..
T Consensus 1 ~iR~~~~~------d~~~i~~l~~~~F~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~ 73 (127)
T PF13527_consen 1 EIRPLTES------DFEQIIELFNEAFGDSESPPEIWEYFRNLY-GPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAA 73 (127)
T ss_dssp -EEEE-GG------GHHHHHHHHHHHTTT-CHHHHHHHHHHHHH-HTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEE
T ss_pred CceECCHH------HHHHHHHHHHHHCCCCCCchhhhhhhhccc-CcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEE
Confidence 47899998 899999999999986655431 1222222 23468888999999999988632 222 34
Q ss_pred eEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEe
Q 047740 77 SITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVD 131 (154)
Q Consensus 77 ~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~ 131 (154)
.+..+ +|||+|+|++|++++++.+++.|+..+.+.. ....||+++||+.+
T Consensus 74 ~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~-----~~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 74 YIGDVAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP-----SSPPFYRRFGFEYA 127 (127)
T ss_dssp EEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE------SSHHHHHHTTEEEE
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec-----CChhhhhcCCCEEC
Confidence 45554 9999999999999999999999988777763 34689999999863
No 27
>PRK10514 putative acetyltransferase; Provisional
Probab=99.76 E-value=9e-17 Score=96.74 Aligned_cols=129 Identities=19% Similarity=0.225 Sum_probs=82.4
Q ss_pred cccccccccCCCchhhHHHHHHHhhhhC------CCcHHHHHHHH---HHhhcCCceEEEEE-ECCeEEEEEEEEeCCCc
Q 047740 5 GTVTELQRNSTNWTFVVDEIVKMEKKIF------PKHESLARSFD---EDLKKKNSGLLYIQ-IHGQVVGYVMYAWPTSL 74 (154)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~ivG~~~~~~~~~~ 74 (154)
+.||+++++ |.+++..+....+ ..... .+.+. ..+... ...+++. +++++||++.+... .
T Consensus 2 ~~ir~~~~~------D~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~iG~~~~~~~--~ 71 (145)
T PRK10514 2 ISIRRSRHE------EGERLVAIWRRSVDATHDFLSAED-RAEIEELVRSFLPE-APLWVAVDERDQPVGFMLLSGG--H 71 (145)
T ss_pred ceeeecchh------hHHHHHHHHHHHHHHhCcccCchh-HHHHHHHHHHHhcc-CceEEEEecCCcEEEEEEEecC--c
Confidence 678999988 6777777655421 11111 11121 112222 2334443 58999999987421 1
Q ss_pred eeeEEee-ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeecccC-CCceEEEE
Q 047740 75 SASITKL-NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYSA-DRPAYRMY 148 (154)
Q Consensus 75 ~~~i~~~-~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~-~~~~~~m~ 148 (154)
...+... +|||+|+|++|++.+++.+ ..+.+.|...|++|++||+|+||+..++...-... ..+.+.|.
T Consensus 72 ~~~~~v~p~~rgkGig~~Ll~~~~~~~-----~~i~~~v~~~N~~a~~~yek~Gf~~~~~~~~~~~~~~~~~~~~~ 142 (145)
T PRK10514 72 MEALFVDPDVRGCGVGRMLVEHALSLH-----PELTTDVNEQNEQAVGFYKKMGFKVTGRSEVDDQGRPYPLLHLA 142 (145)
T ss_pred EeEEEECHHhccCCHHHHHHHHHHHhc-----cccEEEeecCCHHHHHHHHHCCCEEecccccCCCCCccceEEEE
Confidence 1122222 9999999999999999864 36788899999999999999999999876533222 22444443
No 28
>PRK07757 acetyltransferase; Provisional
Probab=99.76 E-value=2.8e-17 Score=99.71 Aligned_cols=114 Identities=22% Similarity=0.241 Sum_probs=82.5
Q ss_pred cccccccccCCCchhhHHHHHHHhhhhCCCcH---HHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCCCceeeEEee
Q 047740 5 GTVTELQRNSTNWTFVVDEIVKMEKKIFPKHE---SLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKL 81 (154)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~ 81 (154)
+.+|+++++ |++.+.++.....+... ...+.+... ...++++.++|++||++.+........++..+
T Consensus 2 ~~ir~~~~~------D~~~l~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~lvG~~~l~~~~~~~~~i~~v 71 (152)
T PRK07757 2 MEIRKARLS------DVKAIHALINVYAKKGLMLPRSLDELYEN----IRDFYVAEEEGEIVGCCALHILWEDLAEIRSL 71 (152)
T ss_pred ceEeeCCcc------cHHHHHHHHHHHHhcCCccCCCHHHHHhc----cCcEEEEEECCEEEEEEEEEeccCCceEEEEE
Confidence 578999988 67777777554322111 111222221 12356777899999999987555455566555
Q ss_pred ----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeE
Q 047740 82 ----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTL 133 (154)
Q Consensus 82 ----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~ 133 (154)
+|||+|+|++|++.+++.+.+.|+..+.+.+. +.+||+|+||+..+.
T Consensus 72 ~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~-----~~~~Y~k~GF~~~~~ 122 (152)
T PRK07757 72 AVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY-----QPEFFEKLGFREVDK 122 (152)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC-----cHHHHHHCCCEEccc
Confidence 99999999999999999999889988876643 468999999999876
No 29
>PRK10314 putative acyltransferase; Provisional
Probab=99.76 E-value=1.2e-17 Score=101.07 Aligned_cols=127 Identities=17% Similarity=0.237 Sum_probs=91.1
Q ss_pred hHHHHHHHhhhhCCCcHHHHH-HHHHHhhcCCceEEEEEECCeEEEEEEEEeCCC--ceeeEEee----ccccccHHHHH
Q 047740 20 VVDEIVKMEKKIFPKHESLAR-SFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTS--LSASITKL----NYRGQGRGEAL 92 (154)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~--~~~~i~~~----~~rg~Gig~~l 92 (154)
++.++..+...+|-....... .+...-..+....+++.+++++||++.+....+ ....++.+ +|||+|+|++|
T Consensus 16 ~~~~~~~lR~~VF~~eq~~~~~e~D~~d~~~~~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~L 95 (153)
T PRK10314 16 QLYALLQLRCAVFVVEQNCPYQDIDGDDLTGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQL 95 (153)
T ss_pred HHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcEEEEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHH
Confidence 677888888888754433221 111100012345567788999999999965332 24567766 99999999999
Q ss_pred HHHHHHHHHHc-CCcEEEEEEccCChhHHHHHHHcCCeEeeEeeecccCCCceEEEEeec
Q 047740 93 LEAAIKKCRTR-TVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYSADRPAYRMYIDF 151 (154)
Q Consensus 93 l~~~~~~~~~~-g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~~~l 151 (154)
++.+++.+.+. +...+.+.+ +..+..||+|+||+.++. .|...|-+++.|.|.+
T Consensus 96 m~~~~~~~~~~~~~~~i~L~a---~~~a~~fY~k~GF~~~g~--~f~~~Gi~h~~M~~~~ 150 (153)
T PRK10314 96 MSKTLESCTRHWPDKPVYLGA---QAHLQNFYQSFGFIPVTE--VYEEDGIPHIGMAREV 150 (153)
T ss_pred HHHHHHHHHHHCCCCcEEEeh---HHHHHHHHHHCCCEECCC--ccccCCCCcHhhhhhh
Confidence 99999999886 677788775 466889999999999884 4555677888888765
No 30
>PHA00673 acetyltransferase domain containing protein
Probab=99.75 E-value=2.3e-16 Score=94.01 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=86.7
Q ss_pred hHHHHHHHhhhh-C-------CCcHHHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCC------CceeeEEee----
Q 047740 20 VVDEIVKMEKKI-F-------PKHESLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPT------SLSASITKL---- 81 (154)
Q Consensus 20 ~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~------~~~~~i~~~---- 81 (154)
|++++..+..+. . ..+......+.....+++..++++.++|++||++.+...+ ...+.|..+
T Consensus 16 D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~ 95 (154)
T PHA00673 16 DAPTFASLCAEYAHESANADLAGRAPDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAA 95 (154)
T ss_pred hHHHHHHHHHhcccccccccccccchhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEECh
Confidence 788888875441 1 1112233457777778888899999999999998886422 123456666
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEee
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
++||+|+|++|++++++++++.|+..+++...|+ ...+.||.++|++...
T Consensus 96 ~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~-~~tv~fy~~~g~~~~~ 145 (154)
T PHA00673 96 AHRPGGAGMALLRATEALARDLGATGLYVSGPTE-GRLVQLLPAAGYRETN 145 (154)
T ss_pred hccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCC-ccchHHHHhCCchhhc
Confidence 9999999999999999999999999999997665 5689999999998876
No 31
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.74 E-value=1.4e-16 Score=92.54 Aligned_cols=82 Identities=32% Similarity=0.593 Sum_probs=64.6
Q ss_pred HHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCCCceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEcc
Q 047740 39 ARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDP 114 (154)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 114 (154)
.+.+...+..+...++++.+++++||++.+. .... +..+ +|||+|+|++|++.+++.++. |+..+.+.
T Consensus 32 ~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~-~~~~---i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~--- 103 (117)
T PF13673_consen 32 PEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE-PDGE---ISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVE--- 103 (117)
T ss_dssp HHHHHHHHCTCCCEEEEEEETTEEEEEEEEE-TCEE---EEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEE---
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEEc-CCCe---EEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEE---
Confidence 3455555665567899999999999999996 2222 3334 999999999999999999976 88877766
Q ss_pred CChhHHHHHHHcCC
Q 047740 115 LRTPAVNLYKKFGF 128 (154)
Q Consensus 115 ~n~~a~~~y~~~Gf 128 (154)
.|..+.+||+++||
T Consensus 104 ~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 104 ANERARRFYRKLGF 117 (117)
T ss_dssp C-HHHHHHHHHTT-
T ss_pred eCHHHHHHHHhCCC
Confidence 88999999999998
No 32
>PRK10562 putative acetyltransferase; Provisional
Probab=99.72 E-value=1.5e-15 Score=91.51 Aligned_cols=127 Identities=18% Similarity=0.229 Sum_probs=86.7
Q ss_pred cccccccCCCchhhHHHHHHHhhhhC--CCc---HHH----HHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCCCceee
Q 047740 7 VTELQRNSTNWTFVVDEIVKMEKKIF--PKH---ESL----ARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTSLSAS 77 (154)
Q Consensus 7 ir~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~ 77 (154)
||+++.+ |++.+.++..... +.+ ... ...+...+. .....+++.+++++||++.+... . .
T Consensus 2 ir~~~~~------D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~iG~~~~~~~-~---~ 70 (145)
T PRK10562 2 IREYQPS------DLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDVYL-PAAQTWVWEEDGKLLGFVSVLEG-R---F 70 (145)
T ss_pred cccccch------hhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhc-CcccEEEEEECCEEEEEEEEeec-c---E
Confidence 7888888 7888888754432 111 111 111112222 33345666778999999988532 2 2
Q ss_pred EEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeecccC-CCceEEEEeec
Q 047740 78 ITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYSA-DRPAYRMYIDF 151 (154)
Q Consensus 78 i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~-~~~~~~m~~~l 151 (154)
+..+ +|||+|+|++|++.+++. +..+.+.+..+|++|++||+|+||+.+++ .++.+ +.+.++|...-
T Consensus 71 i~~~~v~~~~rg~G~g~~ll~~~~~~-----~~~~~~~v~~~N~~s~~~y~k~Gf~~~~~--~~~~~~~~~~~~~~~~~ 142 (145)
T PRK10562 71 VGALFVAPKAVRRGIGKALMQHVQQR-----YPHLSLEVYQKNQRAVNFYHAQGFRIVDS--AWQEETQHPTWIMSWQA 142 (145)
T ss_pred EEEEEECHHHcCCCHHHHHHHHHHhh-----CCeEEEEEEcCChHHHHHHHHCCCEEccc--cccCCCCCEEEEEEecC
Confidence 3323 999999999999988774 45788889999999999999999999985 34444 45888887653
No 33
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.70 E-value=5.4e-16 Score=104.44 Aligned_cols=121 Identities=12% Similarity=0.168 Sum_probs=89.2
Q ss_pred CCcccccccccCCCchhhHHHHHHHhhhh--CCC--cHHHHHHHHHHhhcCCceEEEEE-E---CCeEEEEEEEEeCCCc
Q 047740 3 SNGTVTELQRNSTNWTFVVDEIVKMEKKI--FPK--HESLARSFDEDLKKKNSGLLYIQ-I---HGQVVGYVMYAWPTSL 74 (154)
Q Consensus 3 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~-~---~~~ivG~~~~~~~~~~ 74 (154)
|.++||++++. |++.+.++...+ |.. .......+...+..+ ..+.+.. + ++.+||++.+.. ...
T Consensus 185 m~~~Ir~a~~~------Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~-~~~~~~~~d~~gd~givG~~~~~~-~~~ 256 (320)
T TIGR01686 185 LSLNISKNDEQ------NVQRVEELLGRTNQFNATYTRLNQEDVAQHMQKE-EIVTVSMSDRFGDSGIIGIFVFEK-KEG 256 (320)
T ss_pred CEEEEEECChh------hhHHHHHHHHhHHhhhccCccCCHHHHHHHhcCC-CEEEEEEEecCCCCceEEEEEEEe-cCC
Confidence 45789999998 788888887665 321 112234455555444 3222322 2 568999998854 334
Q ss_pred eeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEc--cCChhHHHHHHHcCCeEe
Q 047740 75 SASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVD--PLRTPAVNLYKKFGFQVD 131 (154)
Q Consensus 75 ~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~--~~n~~a~~~y~~~Gf~~~ 131 (154)
..+|..+ .+||+|+|+.|++++++.+++.|+..+.+.+. +.|.+|+.||+++||+..
T Consensus 257 ~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 257 NLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred cEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 4556666 99999999999999999999999999999875 479999999999999854
No 34
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.70 E-value=5.9e-16 Score=107.98 Aligned_cols=134 Identities=17% Similarity=0.237 Sum_probs=89.4
Q ss_pred ccccccccCCCchhhHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeC-CCceeeEEee---
Q 047740 6 TVTELQRNSTNWTFVVDEIVKMEKKIFPKHESLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWP-TSLSASITKL--- 81 (154)
Q Consensus 6 ~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~-~~~~~~i~~~--- 81 (154)
.||+++++ |++++..+........+.. ......+......++++.+++++||++.+... ....+++..+
T Consensus 284 ~IR~at~~------Dl~~I~~L~~~~~~~~~~~-~~~~~~l~~~~~~~~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~ 356 (429)
T TIGR01890 284 SIRQATID------DIGGIAALIRPLEEQGILV-RRSREYLEREISEFSIIEHDGNIIGCAALYPYAEEDCGEMACLAVS 356 (429)
T ss_pred heEECCHH------HHHHHHHHHHHHHHcCCch-hhhHHHHHhhcCcEEEEEECCEEEEEEEEEecCCCCeEEEEEEEEC
Confidence 67888887 7888888754322111110 11111222223346677789999999998654 3345667655
Q ss_pred -ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe------eecccCCCceEEEEee
Q 047740 82 -NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI------QGYYSADRPAYRMYID 150 (154)
Q Consensus 82 -~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~------~~~~~~~~~~~~m~~~ 150 (154)
+|||+|+|++|+++++++|+++|+..+++.. . .+.+||+++||+..+.. ..+|..++...++.|+
T Consensus 357 p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~--~--~a~~fY~k~GF~~~g~~~l~~~~~~~~~~~r~~~~~~~~ 428 (429)
T TIGR01890 357 PEYQDGGRGERLLAHIEDRARQMGISRLFVLT--T--RTGHWFRERGFQTASVDELPEARRKLYNYQRNSKILMKR 428 (429)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCCEEEEee--c--chHHHHHHCCCEECChhhCCHHHHHHhcccccCceeeec
Confidence 9999999999999999999999999876542 3 36799999999999863 2344444433444443
No 35
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.70 E-value=9.2e-16 Score=102.35 Aligned_cols=83 Identities=23% Similarity=0.330 Sum_probs=67.6
Q ss_pred eEEEEEE--CCeEEEEEEEEeCC--CceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHH
Q 047740 52 GLLYIQI--HGQVVGYVMYAWPT--SLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLY 123 (154)
Q Consensus 52 ~~~~~~~--~~~ivG~~~~~~~~--~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y 123 (154)
..+++.+ ++++||++.+.... ....++..+ +|||+|+|++|+..+++++++.|+..+.+.|.+.|.+|++||
T Consensus 199 ~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y 278 (292)
T TIGR03448 199 GLFLAFDDAPGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTY 278 (292)
T ss_pred ceEEEEECCCCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHH
Confidence 3566666 68999997654322 223344433 999999999999999999999999999999999999999999
Q ss_pred HHcCCeEeeEe
Q 047740 124 KKFGFQVDTLI 134 (154)
Q Consensus 124 ~~~Gf~~~~~~ 134 (154)
+|+||+..++.
T Consensus 279 ~k~GF~~~~~~ 289 (292)
T TIGR03448 279 EKLGFTVAEVD 289 (292)
T ss_pred HHcCCEEcccc
Confidence 99999987754
No 36
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.70 E-value=3.3e-15 Score=89.50 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=83.0
Q ss_pred cccccccccCCCchhhHHHHHHHhhhh----C---CC---c-HHHHHHHHHHh---hcCCceEEEEEE--CCeEEEEEEE
Q 047740 5 GTVTELQRNSTNWTFVVDEIVKMEKKI----F---PK---H-ESLARSFDEDL---KKKNSGLLYIQI--HGQVVGYVMY 68 (154)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~----~---~~---~-~~~~~~~~~~~---~~~~~~~~~~~~--~~~ivG~~~~ 68 (154)
++||+++++ |++.+.++.... + .. + ......+.... ......++++.+ ++++||++.+
T Consensus 2 l~lr~~~~~------D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~ 75 (142)
T PF13302_consen 2 LTLRPLTPE------DADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGL 75 (142)
T ss_dssp EEEEE-HGG------GHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEcCCHH------HHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeee
Confidence 678999999 788888775311 1 11 1 12222332111 111234555555 3579999999
Q ss_pred Ee--CCCceeeEEee---ccccccHHHHHHHHHHHHHHHc-CCcEEEEEEccCChhHHHHHHHcCCe
Q 047740 69 AW--PTSLSASITKL---NYRGQGRGEALLEAAIKKCRTR-TVLRKTLHVDPLRTPAVNLYKKFGFQ 129 (154)
Q Consensus 69 ~~--~~~~~~~i~~~---~~rg~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~a~~~y~~~Gf~ 129 (154)
.. .....++++.. +|||+|+|++++..+++++++. |+..+.+.|.++|.+|+++++|+||+
T Consensus 76 ~~~~~~~~~~eig~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 76 YNIDKNNNWAEIGYWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp EEEETTTTEEEEEEEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred eecccCCCccccccchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 43 24566777766 9999999999999999999755 99999999999999999999999996
No 37
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.70 E-value=4.7e-16 Score=108.88 Aligned_cols=132 Identities=18% Similarity=0.265 Sum_probs=91.2
Q ss_pred cccccccccCCCchhhHHHHHHHhhhh----CCCcHHHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCC-CceeeEE
Q 047740 5 GTVTELQRNSTNWTFVVDEIVKMEKKI----FPKHESLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPT-SLSASIT 79 (154)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~-~~~~~i~ 79 (154)
+.||+++++ |++++.++.... +...+. .+.+ ......++++.+++++||++.+.... ....++.
T Consensus 295 ~~IR~at~~------D~~~I~~L~~~~~~~~~~~~~~-~~~l----~~~~~~~~va~~dg~iVG~~~~~~~~~~~~~~I~ 363 (441)
T PRK05279 295 EQLRRATID------DVGGILELIRPLEEQGILVRRS-REQL----EREIDKFTVIERDGLIIGCAALYPFPEEKMGEMA 363 (441)
T ss_pred HHeEeCCHH------HHHHHHHHHHHHHHcCCccccC-HHHH----hcccCcEEEEEECCEEEEEEEEEEcCCCCeEEEE
Confidence 567888887 677777765432 211111 1222 22233467778899999999876432 3456666
Q ss_pred ee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe------eecccCCCceEEEEe
Q 047740 80 KL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI------QGYYSADRPAYRMYI 149 (154)
Q Consensus 80 ~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~------~~~~~~~~~~~~m~~ 149 (154)
.+ +|||+|+|++|+++++++|++.|+..+.+.+ ..+++||+++||+..+.. ..+|...+..-++.|
T Consensus 364 ~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~----~~a~~fY~k~GF~~~g~~~~~~~~~~~y~~~r~~~~~~~ 439 (441)
T PRK05279 364 CLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT----TRTAHWFLERGFVPVDVDDLPEAKRQLYNYQRRSKVLVK 439 (441)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec----chHHHHHHHCcCEECChhhCcHHHHHhhCcccCceeeee
Confidence 66 9999999999999999999999999887643 468999999999999862 234544555555555
Q ss_pred ec
Q 047740 150 DF 151 (154)
Q Consensus 150 ~l 151 (154)
.|
T Consensus 440 ~~ 441 (441)
T PRK05279 440 DL 441 (441)
T ss_pred cC
Confidence 43
No 38
>PLN02825 amino-acid N-acetyltransferase
Probab=99.69 E-value=7.7e-16 Score=108.13 Aligned_cols=132 Identities=12% Similarity=0.151 Sum_probs=94.8
Q ss_pred ccccccccCCCchhhHHHHHHHhhhhCCCc---HHHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeC-CCceeeEEee
Q 047740 6 TVTELQRNSTNWTFVVDEIVKMEKKIFPKH---ESLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWP-TSLSASITKL 81 (154)
Q Consensus 6 ~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~-~~~~~~i~~~ 81 (154)
.||+++.+ |++.+.++........ ....+.+... ...++++..+|++|||+.+.+. ....+++..+
T Consensus 369 ~IR~At~e------Di~~I~~Li~~lee~g~lv~rs~e~le~e----i~~f~V~e~Dg~IVG~aal~~~~~~~~aEI~~l 438 (515)
T PLN02825 369 GTRMARVE------DLAGIRQIIRPLEESGILVRRTDEELLRA----LDSFVVVEREGSIIACAALFPFFEEKCGEVAAI 438 (515)
T ss_pred hheeCCHH------HHHHHHHHHHHHHHcCCCcCCCHHHHHhc----CCcEEEEEECCEEEEEEEEEeecCCCcEEEEEE
Confidence 57888888 7888888765532111 1112233322 2357778889999999988643 3445677666
Q ss_pred ----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe------eecccCCCceEEEEeec
Q 047740 82 ----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI------QGYYSADRPAYRMYIDF 151 (154)
Q Consensus 82 ----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~------~~~~~~~~~~~~m~~~l 151 (154)
+|||+|+|++|++++++.|++.|++.+++.+ +.+.+||+++||+..+.. +..|...+...++.|.|
T Consensus 439 aV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt----t~a~~fY~k~GF~~~~~~~lp~~~~~~yn~~r~sk~~~k~l 514 (515)
T PLN02825 439 AVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT----TRTADWFVRRGFSECSIESLPEARRKRINLSRGSKYYMKKL 514 (515)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe----CcHHHHHHHCCCEEeChhhCCHHHHhhcCccCCcEEEEEec
Confidence 9999999999999999999999999999876 357899999999987753 12344556666666665
No 39
>PHA01807 hypothetical protein
Probab=99.69 E-value=5.7e-15 Score=88.89 Aligned_cols=87 Identities=10% Similarity=0.161 Sum_probs=67.9
Q ss_pred HHHHHHhhcCCceEEEEEECCeEEEEEEEEeCCC-ceeeEE-----ee--ccccccHHHHHHHHHHHHHHHcCCcEEEEE
Q 047740 40 RSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTS-LSASIT-----KL--NYRGQGRGEALLEAAIKKCRTRTVLRKTLH 111 (154)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~-~~~~i~-----~~--~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~ 111 (154)
..+.....+.....+++.++|++||++.+..... ....+. .+ +|||+|+|++|++.+++.|++.|+..+.++
T Consensus 42 ~~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~ 121 (153)
T PHA01807 42 ERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFS 121 (153)
T ss_pred HHHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3444434445555677788999999999864322 122222 22 999999999999999999999999999999
Q ss_pred EccCChhHHHHHHHc
Q 047740 112 VDPLRTPAVNLYKKF 126 (154)
Q Consensus 112 ~~~~n~~a~~~y~~~ 126 (154)
+...|.+|++||++.
T Consensus 122 v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 122 HREGEGRYTIHYRRV 136 (153)
T ss_pred ecCCcHHHHHHHHhc
Confidence 999999999999984
No 40
>PRK09831 putative acyltransferase; Provisional
Probab=99.69 E-value=1.1e-15 Score=92.28 Aligned_cols=127 Identities=18% Similarity=0.222 Sum_probs=81.1
Q ss_pred ccccccccCCCchhhHHHHHHHhhhhCCC------cHHHHH--------HHHHHhhcCCceEEEEEECCeEEEEEEEEeC
Q 047740 6 TVTELQRNSTNWTFVVDEIVKMEKKIFPK------HESLAR--------SFDEDLKKKNSGLLYIQIHGQVVGYVMYAWP 71 (154)
Q Consensus 6 ~ir~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~ 71 (154)
.||+++++ |++.+..+....+.. +..... .+...+. ...++++.++|++||++.+..
T Consensus 2 ~ir~a~~~------D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~iiG~~~~~~- 72 (147)
T PRK09831 2 QIRNYQPG------DFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLA--KSQVRVAVINAQPVGFITCIE- 72 (147)
T ss_pred ccccCChh------hHHHHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHHHh--cCceEEEEECCEEEEEEEehh-
Confidence 57888888 677777775543211 111011 1122222 345677788999999988742
Q ss_pred CCceeeEEee-ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeecccCC-CceEEEEe
Q 047740 72 TSLSASITKL-NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYSAD-RPAYRMYI 149 (154)
Q Consensus 72 ~~~~~~i~~~-~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~-~~~~~m~~ 149 (154)
.....+... +|||+|+|++|++++++.+.+ +.+. .|..+++||+|+||+..++.+.-..+. .+.+.|.|
T Consensus 73 -~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-------l~v~-~~~~a~~~Y~k~Gf~~~g~~~~~~~g~~~~~~~m~~ 143 (147)
T PRK09831 73 -HYIDMLFVDPEYTRRGVASALLKPLIKSESE-------LTVD-ASITAKPFFERYGFQTVKQQRVECRGEWFINFYMRY 143 (147)
T ss_pred -ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-------eEee-cchhhHHHHHHCCCEEeeccceEECCEEEEeeEEEe
Confidence 111122222 999999999999999998765 3333 357899999999999999875323222 26666665
Q ss_pred e
Q 047740 150 D 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 144 ~ 144 (147)
T PRK09831 144 K 144 (147)
T ss_pred c
Confidence 3
No 41
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.67 E-value=3.8e-16 Score=95.50 Aligned_cols=139 Identities=22% Similarity=0.289 Sum_probs=104.3
Q ss_pred cccccccccCCCchhhHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCCCc----------
Q 047740 5 GTVTELQRNSTNWTFVVDEIVKMEKKIFPKHESLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTSL---------- 74 (154)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~---------- 74 (154)
+.++.+++. ++.++..+...+||...... .+........ ..-++.-++..||...+......
T Consensus 17 ~~l~~it~~------nl~~~~~l~~~~fP~~y~~k-fy~~~~~~~~-~~~~A~~~~~~v~a~~~k~~~~~~~~~r~~~~~ 88 (187)
T KOG3138|consen 17 IELRLITPN------NLKQLKQLNEDIFPISYVDK-FYPDVLSNGD-LTQLAYYNEIAVGAVACKLIKFVQNAKRLFGNR 88 (187)
T ss_pred eeeccCCcc------hHHHHHHHhccccCcchHHH-HHHHHHhcCC-HHHhhhhccccccceeeeehhhhhhhhhhhccc
Confidence 678888888 79999999999999777643 4444444333 33333345666666665432111
Q ss_pred eeeEEee----ccccccHHHHHHHHHHHHHHHcC-CcEEEEEEccCChhHHHHHHHcCCeEeeEeeecccCCC--ceEEE
Q 047740 75 SASITKL----NYRGQGRGEALLEAAIKKCRTRT-VLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYSADR--PAYRM 147 (154)
Q Consensus 75 ~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g-~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~~--~~~~m 147 (154)
..++-.+ .||.+|||+.|++.+.+++.+.. ++.+++.+...|..++.||++.||+.+.+...||.... +...|
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~~~~~~~~~~l 168 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYSILGPPDDSFL 168 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeeccccccccccCcchhhh
Confidence 1333333 99999999999999999999986 88999999999999999999999999999999888653 66666
Q ss_pred Eeec
Q 047740 148 YIDF 151 (154)
Q Consensus 148 ~~~l 151 (154)
.+.+
T Consensus 169 ~~~~ 172 (187)
T KOG3138|consen 169 RKLL 172 (187)
T ss_pred hhhe
Confidence 6554
No 42
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.66 E-value=6.3e-15 Score=84.20 Aligned_cols=120 Identities=18% Similarity=0.303 Sum_probs=89.8
Q ss_pred CcccccccccCCCchhhHHH-----HHHHhhhhCCCcHHHHHHHHHHhhcCC-ceEEEEEE--CCeEEEEEEEEeC----
Q 047740 4 NGTVTELQRNSTNWTFVVDE-----IVKMEKKIFPKHESLARSFDEDLKKKN-SGLLYIQI--HGQVVGYVMYAWP---- 71 (154)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~ivG~~~~~~~---- 71 (154)
.+.+|++..+| +.. +.++...-.-.++.+...+.......+ ....++++ .+++||.+.+...
T Consensus 6 ~~~lR~L~~~D------~~kGf~elL~qLT~vG~vt~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfI 79 (150)
T KOG3396|consen 6 GFKLRPLEEDD------YGKGFIELLKQLTSVGVVTREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFI 79 (150)
T ss_pred ceEEeeccccc------ccchHHHHHHHHhhccccCHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhh
Confidence 47899999884 432 222333333455666667777666666 34445554 5899999988632
Q ss_pred --CCceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEee
Q 047740 72 --TSLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 72 --~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
.+..+++..+ ++||+++|+.|+..+...++..|+-++.|.|.+.| +.||+|+||...+
T Consensus 80 h~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~n---v~FYeKcG~s~~~ 143 (150)
T KOG3396|consen 80 HGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKN---VKFYEKCGYSNAG 143 (150)
T ss_pred hcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhh---hhHHHHcCccccc
Confidence 2445667766 99999999999999999999999999999999988 7799999998766
No 43
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.66 E-value=2.7e-15 Score=108.71 Aligned_cols=119 Identities=23% Similarity=0.245 Sum_probs=84.8
Q ss_pred CcccccccccCCCchhhHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCCCceeeEEee--
Q 047740 4 NGTVTELQRNSTNWTFVVDEIVKMEKKIFPKHESLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKL-- 81 (154)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~-- 81 (154)
.++||+++++ |++.+.++............... ..+......++++.++|++||++.+........++..+
T Consensus 463 gm~IR~a~~~------D~~~I~~L~~~~~~~~~~~~~~~-~~l~~~~~~~~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V 535 (614)
T PRK12308 463 GVKVRPARLT------DIDAIEGMVAYWAGLGENLPRSR-NELVRDIGSFAVAEHHGEVTGCASLYIYDSGLAEIRSLGV 535 (614)
T ss_pred CCEEEECCHH------HHHHHHHHHHHHHhhhcccccCH-HHHhcccCcEEEEEECCEEEEEEEEEEcCCCeEEEEEEEE
Confidence 4678999988 67777777554321111110011 11222334567788899999999986544445566665
Q ss_pred --ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 82 --NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 82 --~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
+|||+|+|+.|++.+++++++.|+..+.+.+ .+.+||+|+||+..++.
T Consensus 536 ~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~-----~a~~FYek~GF~~~~~~ 585 (614)
T PRK12308 536 EAGWQVQGQGSALVQYLVEKARQMAIKKVFVLT-----RVPEFFMKQGFSPTSKS 585 (614)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEee-----CcHHHHHHCCCEECCcc
Confidence 9999999999999999999999999988764 24689999999998854
No 44
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.66 E-value=9e-15 Score=79.09 Aligned_cols=73 Identities=27% Similarity=0.478 Sum_probs=60.2
Q ss_pred ceEEEEEECCeEEEEEEEEeCCCceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHc
Q 047740 51 SGLLYIQIHGQVVGYVMYAWPTSLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKF 126 (154)
Q Consensus 51 ~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~ 126 (154)
..++++.+++++||++.+.. .++...+..+ +|||+|+|+.|++.+.+.+.. ..+++.+ ++.+.+||+++
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~-~~~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~---~~~~~~fY~~~ 75 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWP-NEDFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFT---NPAAIKFYEKL 75 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEE-TTTEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEE---EHHHHHHHHHT
T ss_pred cEEEEEEECCEEEEEEEEEE-cCCEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEE---cHHHHHHHHHC
Confidence 45788889999999999954 4447777777 999999999999999888844 4566665 57899999999
Q ss_pred CCeE
Q 047740 127 GFQV 130 (154)
Q Consensus 127 Gf~~ 130 (154)
||++
T Consensus 76 GF~~ 79 (79)
T PF13508_consen 76 GFEE 79 (79)
T ss_dssp TEEE
T ss_pred cCCC
Confidence 9985
No 45
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=99.64 E-value=1.9e-15 Score=88.45 Aligned_cols=104 Identities=24% Similarity=0.407 Sum_probs=84.1
Q ss_pred CceEEEEEE-CCeEEEEEEEEeCCCce---eeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHH
Q 047740 50 NSGLLYIQI-HGQVVGYVMYAWPTSLS---ASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVN 121 (154)
Q Consensus 50 ~~~~~~~~~-~~~ivG~~~~~~~~~~~---~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~ 121 (154)
+..+.++.. ++++-|++......... +++.-+ +||+.|+|+.|+..+++.....+.-.+.+.|..+|+.|+.
T Consensus 40 pe~~~~a~~p~~~imgyimgk~Eg~~~~wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~ 119 (173)
T KOG3234|consen 40 PEDFIVAEAPTGEIMGYIMGKVEGKDTEWHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAID 119 (173)
T ss_pred hHHhEeccCCCCceEEEEeeeccccCcceeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHH
Confidence 344455544 68999999885443332 333333 9999999999999999999888888899999999999999
Q ss_pred HHHHcCCeEeeEeeecccC--CCceEEEEeecCC
Q 047740 122 LYKKFGFQVDTLIQGYYSA--DRPAYRMYIDFDS 153 (154)
Q Consensus 122 ~y~~~Gf~~~~~~~~~~~~--~~~~~~m~~~l~~ 153 (154)
+|+++||....++..||.. .+|.+.|+|.|++
T Consensus 120 mYkkLGY~~YR~Vi~YY~~g~deda~dMRKalSr 153 (173)
T KOG3234|consen 120 MYKKLGYSVYRTVIEYYSVGPDEDAYDMRKALSR 153 (173)
T ss_pred HHHhcCceEEEeeeeeeccCCCcchHhhhhhhcc
Confidence 9999999999999999883 4589999998864
No 46
>PRK01346 hypothetical protein; Provisional
Probab=99.63 E-value=2.3e-14 Score=99.85 Aligned_cols=124 Identities=16% Similarity=0.115 Sum_probs=90.4
Q ss_pred CCCCcccccccccCCCchhhHHHHHHHhhhhCCCcH--HHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCC-----C
Q 047740 1 MGSNGTVTELQRNSTNWTFVVDEIVKMEKKIFPKHE--SLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPT-----S 73 (154)
Q Consensus 1 M~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~-----~ 73 (154)
|.+.++||+++.+ |++++.++...+|.... .....+.... .....+++.+++++||++.+.... +
T Consensus 3 ~~~~~~iR~~~~~------D~~~i~~L~~~~f~~~~~~~~~~~~~~~~--~~~~~~va~~~~~lvg~~~~~~~~~~~~~~ 74 (411)
T PRK01346 3 RDMAITIRTATEE------DWPAWFRAAATGFGDSPSDEELEAWRALV--EPDRTLGAFDGDEVVGTAGAFDLRLTVPGG 74 (411)
T ss_pred CCCCceeecCCHH------HHHHHHHHHHHHcCCCCChHHHHHHHHhc--CcCCeEEEEECCEEEEEEEEeccccccCCC
Confidence 5567899999988 79999999888886532 1122222222 223467778899999999875321 1
Q ss_pred ---ceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeec
Q 047740 74 ---LSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGY 137 (154)
Q Consensus 74 ---~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~ 137 (154)
....+..+ +|||+|+|++|++++++.+++.|+..+.+.+.. .+||+|+||........+
T Consensus 75 ~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~-----~~~Y~r~Gf~~~~~~~~~ 140 (411)
T PRK01346 75 AVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE-----GGIYGRFGYGPATYSQSL 140 (411)
T ss_pred CccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc-----hhhHhhCCCeeccceEEE
Confidence 23455555 999999999999999999999999877777443 369999999988765433
No 47
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.63 E-value=1e-14 Score=85.94 Aligned_cols=114 Identities=18% Similarity=0.301 Sum_probs=88.2
Q ss_pred ccccccccCCCchhhHHHHHHHhhhhCCCc---HHHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEe-CCCceeeEEee
Q 047740 6 TVTELQRNSTNWTFVVDEIVKMEKKIFPKH---ESLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAW-PTSLSASITKL 81 (154)
Q Consensus 6 ~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~-~~~~~~~i~~~ 81 (154)
.||.++.+ |+..+.++........ ..+.+.+...+ ..++++..+|.+||++.+.+ ...+.+++..+
T Consensus 2 ~iR~A~~~------Di~~I~~Li~~~~~~gil~~rs~~~le~~i----~dF~i~E~~g~viGC~aL~~~~~~~~gE~~~l 71 (153)
T COG1246 2 QIRKARIS------DIPAILELIRPLELQGILLRRSREQLEEEI----DDFTIIERDGKVIGCAALHPVLEEDLGELRSL 71 (153)
T ss_pred ceeecccc------chHHHHHHHHHHhhccccchhhHHHHHHHH----hhheeeeeCCcEEEEEeecccCccCeeeEEEE
Confidence 57888888 7888888866543321 11112222222 23677888999999999973 67778888888
Q ss_pred ----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeE
Q 047740 82 ----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTL 133 (154)
Q Consensus 82 ----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~ 133 (154)
+|||+|+|..|++.++..|++.|++.+++.+. .+..||.++||+.+..
T Consensus 72 aV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt----~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 72 AVHPDYRGSGRGERLLERLLADARELGIKELFVLTT----RSPEFFAERGFTRVDK 123 (153)
T ss_pred EECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec----ccHHHHHHcCCeECcc
Confidence 99999999999999999999999999998863 5678999999999875
No 48
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.62 E-value=2.4e-14 Score=95.55 Aligned_cols=82 Identities=20% Similarity=0.193 Sum_probs=65.7
Q ss_pred ceEEEEEECCeEEEEEEEEeCCCceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHc
Q 047740 51 SGLLYIQIHGQVVGYVMYAWPTSLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKF 126 (154)
Q Consensus 51 ~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~ 126 (154)
...+++.+++++||++.+.........+..+ +|||+|+|++|++.+++.+. ..+.+.+...|.+|++||+++
T Consensus 46 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~----~~~~~~~~~~n~~a~~fy~~~ 121 (292)
T TIGR03448 46 TRHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG----GRLRVWAHGDLPAARALASRL 121 (292)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc----CceEEEEcCCCHHHHHHHHHC
Confidence 4567777899999999986543333445555 99999999999999998764 457788888999999999999
Q ss_pred CCeEeeEeee
Q 047740 127 GFQVDTLIQG 136 (154)
Q Consensus 127 Gf~~~~~~~~ 136 (154)
||+.......
T Consensus 122 Gf~~~~~~~~ 131 (292)
T TIGR03448 122 GLVPTRELLQ 131 (292)
T ss_pred CCEEccEEEE
Confidence 9998876533
No 49
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.61 E-value=5.1e-14 Score=85.37 Aligned_cols=138 Identities=18% Similarity=0.240 Sum_probs=98.6
Q ss_pred CCcccccccccCCCchhhHHHHHHHhhhhCCCcHH--HHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeC--CC---ce
Q 047740 3 SNGTVTELQRNSTNWTFVVDEIVKMEKKIFPKHES--LARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWP--TS---LS 75 (154)
Q Consensus 3 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~--~~---~~ 75 (154)
+++.||..++. |+..+.++....|..... ..+.++..........+++.++|++||.+.+..- .+ ..
T Consensus 2 ~~~~ir~e~~~------d~~~i~~~~~~aF~~~~e~~~v~~lR~~~~~~~~LslVA~d~g~vvG~Il~s~v~~~g~~~~~ 75 (171)
T COG3153 2 MMMLIRTETPA------DIPAIEALTREAFGPGREAKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFSPVTVGGEELGW 75 (171)
T ss_pred CccEEEecChh------hHHHHHHHHHHHhhcchHHHHHHHHHhcCCcccceeEEEeeCCEEEEEEEEeEEEecCcccce
Confidence 45788999998 799999998888873322 2223333222234567888999999999998642 11 22
Q ss_pred eeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeeccc-CCCceEEEEee
Q 047740 76 ASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYS-ADRPAYRMYID 150 (154)
Q Consensus 76 ~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~-~~~~~~~m~~~ 150 (154)
..++.+ +|||+|||++|++..++.++..|+..+.+.=++. +|.++||++.....-+.. +..+...|.+.
T Consensus 76 ~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp~------YY~rfGF~~~~~~~l~~p~~~~~~~fl~~~ 149 (171)
T COG3153 76 LGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDPT------YYSRFGFEPAAGAKLYAPGPVPDERFLALE 149 (171)
T ss_pred EEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCcc------cccccCcEEccccccccCCCCCCceEEEEE
Confidence 333333 9999999999999999999999999888764443 999999999987644322 13466777777
Q ss_pred cC
Q 047740 151 FD 152 (154)
Q Consensus 151 l~ 152 (154)
|.
T Consensus 150 L~ 151 (171)
T COG3153 150 LG 151 (171)
T ss_pred cc
Confidence 64
No 50
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.57 E-value=2.2e-14 Score=86.69 Aligned_cols=92 Identities=23% Similarity=0.404 Sum_probs=75.2
Q ss_pred HHhhcCCceEEEEEECC-eEEEEEEEEeCCC---ceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccC
Q 047740 44 EDLKKKNSGLLYIQIHG-QVVGYVMYAWPTS---LSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPL 115 (154)
Q Consensus 44 ~~~~~~~~~~~~~~~~~-~ivG~~~~~~~~~---~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~ 115 (154)
..+......++++++++ ++|||..+...-+ ...+...+ +|||+|||+.|++.+...+.....+.|.++|..+
T Consensus 85 ~El~~~~~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~ 164 (202)
T KOG2488|consen 85 KELRNRKLRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSE 164 (202)
T ss_pred HHHhhccceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecc
Confidence 34444556677888766 9999999975332 24555555 8999999999999999999999999999999999
Q ss_pred ChhHHHHHHHcCCeEeeEee
Q 047740 116 RTPAVNLYKKFGFQVDTLIQ 135 (154)
Q Consensus 116 n~~a~~~y~~~Gf~~~~~~~ 135 (154)
|.+|+.||+++||......+
T Consensus 165 N~~al~Fy~~~gf~~~~~sp 184 (202)
T KOG2488|consen 165 NIRALGFYHRLGFVVDEESP 184 (202)
T ss_pred cchhHHHHHHcCcccCCCCC
Confidence 99999999999999876554
No 51
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=3.7e-13 Score=83.96 Aligned_cols=91 Identities=20% Similarity=0.308 Sum_probs=74.6
Q ss_pred CeEEEEEEEEeCC----CceeeEEee---ccccccHHHHHHHHHHHHHHHc-CCcEEEEEEccCChhHHHHHHHcCCeEe
Q 047740 60 GQVVGYVMYAWPT----SLSASITKL---NYRGQGRGEALLEAAIKKCRTR-TVLRKTLHVDPLRTPAVNLYKKFGFQVD 131 (154)
Q Consensus 60 ~~ivG~~~~~~~~----~~~~~i~~~---~~rg~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~a~~~y~~~Gf~~~ 131 (154)
+++||.+.+.... .....++.. +|||+|+|++++.++++++++. ++.++.+.|.+.|.+|+++++|+||+..
T Consensus 77 ~~~iG~~~~~~~~~~~~~~~~~ig~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~e 156 (187)
T COG1670 77 GELIGVIGLSDIDRAANGDLAEIGYWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRLE 156 (187)
T ss_pred CeEEEEEEEEEeccccccceEEEEEEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChhh
Confidence 4899999997533 456667666 9999999999999999999996 9999999999999999999999999999
Q ss_pred eEeeec-ccCC--CceEEEEee
Q 047740 132 TLIQGY-YSAD--RPAYRMYID 150 (154)
Q Consensus 132 ~~~~~~-~~~~--~~~~~m~~~ 150 (154)
+..... +..+ .|.+.+.+.
T Consensus 157 g~~~~~~~~~g~~~d~~~~~~~ 178 (187)
T COG1670 157 GELRQHEFIKGRWRDTVLYSLL 178 (187)
T ss_pred hhhhhceeeCCeeeeEEEEEEe
Confidence 977553 2233 255555543
No 52
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.53 E-value=8.3e-13 Score=72.23 Aligned_cols=69 Identities=25% Similarity=0.351 Sum_probs=53.4
Q ss_pred CeEEEEEEEEeCCCceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeE
Q 047740 60 GQVVGYVMYAWPTSLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTL 133 (154)
Q Consensus 60 ~~ivG~~~~~~~~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~ 133 (154)
+.+++++... +. +.++.+ +|||||+|+.++..+.+.+.+.|.. ..+.+..+|.+|+++|+|+||+....
T Consensus 10 ~~l~~~~~~~-~~---g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~-~~l~v~~~N~~s~~ly~klGf~~~~~ 82 (86)
T PF08445_consen 10 VALVAWIIRS-DD---GEIGGVYTLPEHRRRGLGSALVAALARELLERGKT-PFLYVDADNEASIRLYEKLGFREIEE 82 (86)
T ss_dssp EEEEEEEEES-CT---CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSE-EEEEEETT-HHHHHHHHHCT-EEEEE
T ss_pred cceeeEeeeC-CC---cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHcCCEEEEE
Confidence 3555555432 22 444444 9999999999999999999998765 67889999999999999999999864
No 53
>PRK13688 hypothetical protein; Provisional
Probab=99.49 E-value=1.3e-12 Score=79.19 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=55.0
Q ss_pred CceEEEEEECCeEEEEEEEEeCC----------CceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccC
Q 047740 50 NSGLLYIQIHGQVVGYVMYAWPT----------SLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPL 115 (154)
Q Consensus 50 ~~~~~~~~~~~~ivG~~~~~~~~----------~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~ 115 (154)
...++++.+++++||++.+.... ....++..+ +|||+|+|++|++.+ .+.++. +.+...
T Consensus 44 ~~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a----~~~~~~---~~~~~~ 116 (156)
T PRK13688 44 ESPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFA----KSFQLP---IKTIAR 116 (156)
T ss_pred CCCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHH----HHhCCe---EEEEec
Confidence 34567788899999998774321 233556666 999999999999854 334443 234444
Q ss_pred ChhHHHHHHHcCCeEeeEe
Q 047740 116 RTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 116 n~~a~~~y~~~Gf~~~~~~ 134 (154)
| .+.+||+|+||+..++.
T Consensus 117 ~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 117 N-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred c-chHHHHHhCCCEEeEEe
Confidence 4 57899999999999876
No 54
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.47 E-value=1.2e-12 Score=86.78 Aligned_cols=74 Identities=15% Similarity=0.260 Sum_probs=61.1
Q ss_pred eEEEEEECCeEEEEEEEEeCCCceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcC
Q 047740 52 GLLYIQIHGQVVGYVMYAWPTSLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFG 127 (154)
Q Consensus 52 ~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~G 127 (154)
.+++..+++++||++.+.. ..+..+ +|||+|+|++|++.+++++++.|+..+.+.+... +..||+|+|
T Consensus 7 ~~~v~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~---~~~fYek~G 78 (297)
T cd02169 7 TVGIFDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPK---NAKFFRGLG 78 (297)
T ss_pred EEEEEEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEccc---HHHHHHHCC
Confidence 3455566799999998842 134444 9999999999999999999999999999998655 468999999
Q ss_pred CeEeeE
Q 047740 128 FQVDTL 133 (154)
Q Consensus 128 f~~~~~ 133 (154)
|+..+.
T Consensus 79 F~~~~~ 84 (297)
T cd02169 79 FKELAN 84 (297)
T ss_pred CEEecc
Confidence 999883
No 55
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.46 E-value=1.6e-12 Score=77.69 Aligned_cols=84 Identities=15% Similarity=0.200 Sum_probs=70.6
Q ss_pred eEEEEEECCeEEEEEEEEeCCC-----ceeeEEee---ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHH
Q 047740 52 GLLYIQIHGQVVGYVMYAWPTS-----LSASITKL---NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLY 123 (154)
Q Consensus 52 ~~~~~~~~~~ivG~~~~~~~~~-----~~~~i~~~---~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y 123 (154)
.+|...+++++||++.+.+.-+ ..++|+.- ..||||+|+++++.+++.|++.|++.+.++|+.+|.+|.+.-
T Consensus 70 ~y~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI 149 (174)
T COG3981 70 TYWAVDEDGQIVGFINLRHQLNDFLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKVI 149 (174)
T ss_pred eEEEEecCCcEEEEEEeeeecchHHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHH
Confidence 3455555799999999975322 13455544 999999999999999999999999999999999999999999
Q ss_pred HHcCCeEeeEee
Q 047740 124 KKFGFQVDTLIQ 135 (154)
Q Consensus 124 ~~~Gf~~~~~~~ 135 (154)
+++|=....++.
T Consensus 150 ~~NGGile~~~~ 161 (174)
T COG3981 150 EANGGILENEFF 161 (174)
T ss_pred HhcCCEEeEEEc
Confidence 999988887664
No 56
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=99.42 E-value=9.2e-12 Score=80.99 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=63.1
Q ss_pred eEEEEEECCeEEEEEEEEeCCCceeeEEee---ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCC
Q 047740 52 GLLYIQIHGQVVGYVMYAWPTSLSASITKL---NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGF 128 (154)
Q Consensus 52 ~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~---~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf 128 (154)
.-+++..+|++|+.|......+...+|..- +|||||+|+.+..+++..|.++|+... +.| .|.+|+++.+|+||
T Consensus 166 ~Gf~i~~~~~iVs~~~s~~~~~~~~EI~I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~-WDc--~N~~S~~lA~kLGf 242 (265)
T PF12746_consen 166 FGFCILHDGEIVSGCSSYFVYENGIEIDIETHPEYRGKGLATAVAAAFILECLENGLYPS-WDC--HNLASIALAEKLGF 242 (265)
T ss_dssp -EEEEEETTEEEEEEEEEEEETTEEEEEEEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE--EE--SSHHHHHHHHHCT-
T ss_pred cEEEEEECCEEEEEEEEEEEECCEEEEEEEECHHhhcCCHHHHHHHHHHHHHHHCCCCcC-eeC--CCHHHHHHHHHcCC
Confidence 456666789999877655444444554444 999999999999999999999988654 445 59999999999999
Q ss_pred eEeeEeeecccCC
Q 047740 129 QVDTLIQGYYSAD 141 (154)
Q Consensus 129 ~~~~~~~~~~~~~ 141 (154)
+.......|+..+
T Consensus 243 ~~~~~Y~~Y~v~~ 255 (265)
T PF12746_consen 243 HFDFEYTAYEVNN 255 (265)
T ss_dssp -EEEEEEEE----
T ss_pred cccceeeeeeecc
Confidence 9999998886554
No 57
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.42 E-value=1e-11 Score=79.31 Aligned_cols=87 Identities=22% Similarity=0.282 Sum_probs=72.7
Q ss_pred CCceEEEEEECCeEEEEEEEEeCCCceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHH
Q 047740 49 KNSGLLYIQIHGQVVGYVMYAWPTSLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYK 124 (154)
Q Consensus 49 ~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~ 124 (154)
.....+...++|++|+.+.....++....|..+ +|||||+|+.|+..+.....+.|. ..++.+..+|+.|.+.|+
T Consensus 175 g~~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk-~~~L~~~~~N~~A~~iY~ 253 (268)
T COG3393 175 GRSRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGK-IPCLFVNSDNPVARRIYQ 253 (268)
T ss_pred hceeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCC-eeEEEEecCCHHHHHHHH
Confidence 333444445567999999997777788888888 999999999999999999988875 567888899999999999
Q ss_pred HcCCeEeeEeee
Q 047740 125 KFGFQVDTLIQG 136 (154)
Q Consensus 125 ~~Gf~~~~~~~~ 136 (154)
|.||+..|++..
T Consensus 254 riGF~~~g~~~~ 265 (268)
T COG3393 254 RIGFREIGEFRE 265 (268)
T ss_pred HhCCeecceEEE
Confidence 999999997643
No 58
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.42 E-value=1.2e-11 Score=83.30 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=64.9
Q ss_pred ceEEEEEECCeEEEEEEEEeCCCceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHc
Q 047740 51 SGLLYIQIHGQVVGYVMYAWPTSLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKF 126 (154)
Q Consensus 51 ~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~ 126 (154)
..++++.++|++||++.+.. . .+..+ +|||+|+|++|+.++++.+++.|...+.+.+.+.| .+||+++
T Consensus 31 d~~vv~~~~~~lVg~g~l~g--~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~---~~fy~kl 102 (332)
T TIGR00124 31 EIFIAVYEDEEIIGCGGIAG--N---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEY---AALFEYC 102 (332)
T ss_pred CEEEEEEECCEEEEEEEEec--C---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchH---HHHHHHc
Confidence 56777888999999999842 1 23344 99999999999999999999999999999987665 5799999
Q ss_pred CCeEeeEee
Q 047740 127 GFQVDTLIQ 135 (154)
Q Consensus 127 Gf~~~~~~~ 135 (154)
||...+...
T Consensus 103 GF~~i~~~~ 111 (332)
T TIGR00124 103 GFKTLAEAK 111 (332)
T ss_pred CCEEeeeec
Confidence 999998764
No 59
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.40 E-value=4.8e-12 Score=73.49 Aligned_cols=98 Identities=24% Similarity=0.301 Sum_probs=76.4
Q ss_pred ceEEEEEECCeEEEEEEEEeCCCce--eeEEee----ccccccHHHHHHHHHHHHHHHcC-CcEEEEEEccCChhHHHHH
Q 047740 51 SGLLYIQIHGQVVGYVMYAWPTSLS--ASITKL----NYRGQGRGEALLEAAIKKCRTRT-VLRKTLHVDPLRTPAVNLY 123 (154)
Q Consensus 51 ~~~~~~~~~~~ivG~~~~~~~~~~~--~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g-~~~i~~~~~~~n~~a~~~y 123 (154)
.+.++-..+|++|+++.+.++.... ..|+.+ ++||+|+|++|+..+++.+.+.- -+.+.+. .....+.||
T Consensus 50 ~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~---AQahLq~fY 126 (155)
T COG2153 50 RHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLG---AQAHLQDFY 126 (155)
T ss_pred ceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEe---hHHHHHHHH
Confidence 3444444499999999997654333 447777 99999999999999999999883 4456665 345689999
Q ss_pred HHcCCeEeeEeeecccCCCceEEEEeecCC
Q 047740 124 KKFGFQVDTLIQGYYSADRPAYRMYIDFDS 153 (154)
Q Consensus 124 ~~~Gf~~~~~~~~~~~~~~~~~~m~~~l~~ 153 (154)
.+.||...+ ..|..++-+++-|.+..+.
T Consensus 127 a~~GFv~~~--e~yledGIpHv~M~r~~~~ 154 (155)
T COG2153 127 ASFGFVRVG--EEYLEDGIPHVGMIREVIQ 154 (155)
T ss_pred HHhCcEEcC--chhhcCCCCchhhhhcccC
Confidence 999999988 5677788889999887654
No 60
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.25 E-value=1.9e-10 Score=81.67 Aligned_cols=79 Identities=18% Similarity=0.351 Sum_probs=61.9
Q ss_pred eEEEEEE---CCeEEEEEEEEeCCCc--------eeeEEee---------------ccccccHHHHHHHHHHHHHHHcCC
Q 047740 52 GLLYIQI---HGQVVGYVMYAWPTSL--------SASITKL---------------NYRGQGRGEALLEAAIKKCRTRTV 105 (154)
Q Consensus 52 ~~~~~~~---~~~ivG~~~~~~~~~~--------~~~i~~~---------------~~rg~Gig~~ll~~~~~~~~~~g~ 105 (154)
-.|..++ ++.+||++.+..+... .+.|..+ +|||+|+|++|++++++.|++.|+
T Consensus 412 e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~ 491 (522)
T TIGR01211 412 EFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGS 491 (522)
T ss_pred eEEEEEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCC
Confidence 4455555 5799999999754421 2222222 699999999999999999999999
Q ss_pred cEEEEEEccCChhHHHHHHHcCCeEeeE
Q 047740 106 LRKTLHVDPLRTPAVNLYKKFGFQVDTL 133 (154)
Q Consensus 106 ~~i~~~~~~~n~~a~~~y~~~Gf~~~~~ 133 (154)
..+.+. .|..+++||+|+||+..+.
T Consensus 492 ~~i~v~---s~~~A~~FY~klGf~~~g~ 516 (522)
T TIGR01211 492 EKILVI---SGIGVREYYRKLGYELDGP 516 (522)
T ss_pred CEEEEe---eCchHHHHHHHCCCEEEcc
Confidence 999875 4789999999999998774
No 61
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=99.24 E-value=1.9e-10 Score=68.87 Aligned_cols=113 Identities=17% Similarity=0.280 Sum_probs=79.1
Q ss_pred hHHHHHHHhhhhCCCcHHHH-HHHHHHhhcCCceEEEEE-ECCeEEEEEEEEeC--CCceeeEEee----ccccccHHHH
Q 047740 20 VVDEIVKMEKKIFPKHESLA-RSFDEDLKKKNSGLLYIQ-IHGQVVGYVMYAWP--TSLSASITKL----NYRGQGRGEA 91 (154)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~ivG~~~~~~~--~~~~~~i~~~----~~rg~Gig~~ 91 (154)
.+++-..+-+.-|+...... ..+.+......-..++.. ....+||...+..- .....++..+ ..||+|+|+.
T Consensus 24 Llk~~~~LIN~eWPRS~TsR~hSL~~ScDs~P~sL~Ll~E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~ 103 (225)
T KOG3397|consen 24 LLKESMTLINSEWPRSDTSREHSLKKSCDSPPMSLLLLNEENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKF 103 (225)
T ss_pred HHHHHHHHHhccCCccchhhhhhhhcccCCCCeeeeeecccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHH
Confidence 44555566666677655532 233333333333333333 36789999988753 3345555555 9999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeee
Q 047740 92 LLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQG 136 (154)
Q Consensus 92 ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~ 136 (154)
|++.++.+++..|++.+++.+... .+||+++||+...-+..
T Consensus 104 lMk~~E~~~R~~gf~~~yLsT~DQ----~~FYe~lGYe~c~Pi~~ 144 (225)
T KOG3397|consen 104 LMKSTEKWMREKGFNEAYLSTDDQ----CRFYESLGYEKCDPIVH 144 (225)
T ss_pred HHHHHHHHHHHhhhhheeeecccc----hhhhhhhcccccCceec
Confidence 999999999999999999987654 78999999998765543
No 62
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=99.11 E-value=7.2e-10 Score=59.77 Aligned_cols=72 Identities=22% Similarity=0.195 Sum_probs=60.7
Q ss_pred CCeEEEEEEEEeCCCceeeEEee-ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEee
Q 047740 59 HGQVVGYVMYAWPTSLSASITKL-NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 59 ~~~ivG~~~~~~~~~~~~~i~~~-~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
+|++|.++... .......-..+ +|||||+.+.++....+++.+.|+. ++..|.++|..++++.+++||....
T Consensus 7 eG~PVSW~lmd-qtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P-~Y~hv~~~N~~~~r~~~~lg~~~~p 79 (89)
T PF08444_consen 7 EGNPVSWSLMD-QTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFP-FYGHVDEDNEASQRLSKSLGFIFMP 79 (89)
T ss_pred CCCEeEEEEec-ccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCC-eEeehHhccHHHHHHHHHCCCeecC
Confidence 78999998884 33333333344 9999999999999999999999986 8899999999999999999998765
No 63
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.95 E-value=1.5e-08 Score=51.65 Aligned_cols=57 Identities=39% Similarity=0.526 Sum_probs=46.5
Q ss_pred EEEEECCeEEEEEEEEeCC--CceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEE
Q 047740 54 LYIQIHGQVVGYVMYAWPT--SLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTL 110 (154)
Q Consensus 54 ~~~~~~~~ivG~~~~~~~~--~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~ 110 (154)
+++..++++||++.+.... ....++..+ +|||+|+|++++..+++++.+.+++.+.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3455689999999997644 355666645 99999999999999999999988888765
No 64
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.95 E-value=1.2e-07 Score=59.25 Aligned_cols=113 Identities=17% Similarity=0.142 Sum_probs=69.3
Q ss_pred HHHHHHHhhcCCceEEEEEECC--eEEEEEEEEeCCC-------------------------------------ceeeEE
Q 047740 39 ARSFDEDLKKKNSGLLYIQIHG--QVVGYVMYAWPTS-------------------------------------LSASIT 79 (154)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~--~ivG~~~~~~~~~-------------------------------------~~~~i~ 79 (154)
+..+....+.++...++...++ +++|.+.+....+ ....|.
T Consensus 15 PnDL~~LlDaP~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIv 94 (196)
T PF13718_consen 15 PNDLQLLLDAPNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIV 94 (196)
T ss_dssp HHHHHHHHH-TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEE
T ss_pred HHHHHHHhcCCcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEE
Confidence 4566666777888888888888 9999998762111 013344
Q ss_pred ee----ccccccHHHHHHHHHHHHHH-------------------------HcCCcEEEEEEccCChhHHHHHHHcCCeE
Q 047740 80 KL----NYRGQGRGEALLEAAIKKCR-------------------------TRTVLRKTLHVDPLRTPAVNLYKKFGFQV 130 (154)
Q Consensus 80 ~~----~~rg~Gig~~ll~~~~~~~~-------------------------~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~ 130 (154)
.+ ++|++|+|+++++.+.+++. ..+++.+-.. ..-++.-.+||.|+||.+
T Consensus 95 RIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtS-FG~t~~Ll~FW~k~gf~p 173 (196)
T PF13718_consen 95 RIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTS-FGATPELLKFWQKNGFVP 173 (196)
T ss_dssp EEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEEEEE-EE--HHHHHHHHCTT-EE
T ss_pred EEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEec-cCCCHHHHHHHHHCCcEE
Confidence 44 99999999999999999993 4566644433 334578899999999999
Q ss_pred eeEeeec-ccCCCceEEEEeecC
Q 047740 131 DTLIQGY-YSADRPAYRMYIDFD 152 (154)
Q Consensus 131 ~~~~~~~-~~~~~~~~~m~~~l~ 152 (154)
+.....- -..|+-.++|.+.|+
T Consensus 174 v~l~~~~n~~SGe~S~imlr~ls 196 (196)
T PF13718_consen 174 VYLGQTRNEASGEHSAIMLRPLS 196 (196)
T ss_dssp EEE-SS--TTT---EEEEEEE--
T ss_pred EEEecCcccccCceeeeEEeecC
Confidence 8755332 223556788888774
No 65
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=98.92 E-value=3.8e-08 Score=55.50 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=66.6
Q ss_pred hHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCC----CceeeEEe---e-ccccccHHHH
Q 047740 20 VVDEIVKMEKKIFPKHESLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPT----SLSASITK---L-NYRGQGRGEA 91 (154)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~----~~~~~i~~---~-~~rg~Gig~~ 91 (154)
.+....++....|...+... ..+..+....+....+|.+||++.+.... .-...++. + .|||+|+|++
T Consensus 10 ~f~~~ie~g~dg~~~~~gl~----~~w~~~~~~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~ 85 (143)
T COG5628 10 EFDRAVELGPDGYSGYPGLE----TYWRDPVREAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRA 85 (143)
T ss_pred HhhHHHhcCCCcccCCcchh----hhhcCcccceeEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHH
Confidence 34445555444444333333 33334555566677799999999875211 11223333 3 9999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeE
Q 047740 92 LLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQV 130 (154)
Q Consensus 92 ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~ 130 (154)
..+++....+. ...+-+.++|++|+++|++.-++.
T Consensus 86 aaK~If~~~~g----~w~Va~i~EN~PA~~fwK~~~~t~ 120 (143)
T COG5628 86 AAKAIFGSAWG----VWQVATVRENTPARAFWKRVAETY 120 (143)
T ss_pred HHHHHHHHhhc----eEEEEEeccCChhHHHHHhhhccc
Confidence 99999765543 345567789999999999987654
No 66
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=98.88 E-value=9.3e-08 Score=56.09 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=50.0
Q ss_pred ccccccHHHHHHHHHHHHHHHc-CCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 82 NYRGQGRGEALLEAAIKKCRTR-TVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
.-||+|+|++++.+++.++... ++.+..+.+..+|.+++++|+|++|..+...
T Consensus 118 ~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~~n 171 (185)
T KOG4135|consen 118 RGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVFYN 171 (185)
T ss_pred cccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheeeeee
Confidence 8899999999999999999987 9999999999999999999999999988763
No 67
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.88 E-value=1.3e-08 Score=58.28 Aligned_cols=123 Identities=10% Similarity=0.076 Sum_probs=79.7
Q ss_pred CCcccccccccCCCchhhHHHHHHHhhhhCCC-cHHHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEe-----CC----
Q 047740 3 SNGTVTELQRNSTNWTFVVDEIVKMEKKIFPK-HESLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAW-----PT---- 72 (154)
Q Consensus 3 ~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~-----~~---- 72 (154)
|++.++..... |...++.+.++.-.. .|--.+.+...+.. .+++..+|.+.|+..-.. ++
T Consensus 6 mp~~~~D~~ap------d~aavLaLNNeha~elswLe~erL~~l~~e----AF~ArR~G~l~afl~tFd~~a~ydSpNFl 75 (167)
T COG3818 6 MPILIRDVRAP------DLAAVLALNNEHALELSWLELERLYRLYKE----AFVARRDGNLAAFLVTFDSSARYDSPNFL 75 (167)
T ss_pred cceehhhhcCC------chhhHHhccchhhhhccccCHHHHHHHHHH----HHHHhhccchhhheeeccccccCCCCcee
Confidence 44556666665 677888876653221 11111222222211 135555666666554321 11
Q ss_pred ------CceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEc--cCChhHHHHHHHcCCeEeeEee
Q 047740 73 ------SLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVD--PLRTPAVNLYKKFGFQVDTLIQ 135 (154)
Q Consensus 73 ------~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~--~~n~~a~~~y~~~Gf~~~~~~~ 135 (154)
+...++..+ .-||+|+|+++.+.+.+++...|+..+.+.|. +.|++|-.|.-.+||.++|.-.
T Consensus 76 WFrErYe~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ 150 (167)
T COG3818 76 WFRERYENFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQAT 150 (167)
T ss_pred ehhhhCCceEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceE
Confidence 223445555 88999999999999999999999998888765 6688999999999999999653
No 68
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=98.82 E-value=9.6e-09 Score=60.54 Aligned_cols=122 Identities=20% Similarity=0.253 Sum_probs=82.6
Q ss_pred CcccccccccCCCchhhHHHHHHHhhhhCCCcHHHHH-HHHHHhhcCCceEEE---------EEECCeEEEEEEEEe-CC
Q 047740 4 NGTVTELQRNSTNWTFVVDEIVKMEKKIFPKHESLAR-SFDEDLKKKNSGLLY---------IQIHGQVVGYVMYAW-PT 72 (154)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~ivG~~~~~~-~~ 72 (154)
+..||+.-++ ++++...+....||..+.... .....+.+....+.. -...+.+||.+.... +.
T Consensus 11 ~~~irp~i~e------~~q~~~~Lea~~FPe~erasfeii~~r~i~~pevc~glf~~~~h~~~~~~~tLIghIigs~~~~ 84 (190)
T KOG4144|consen 11 APRIRPGIPE------SCQRRHTLEASEFPEDERASFEIIRERFISVPEVCPGLFDEIRHFLTLCEGTLIGHIIGSLWDK 84 (190)
T ss_pred cccCCCCChH------HHHHHhccccccCChhHHHHHHHHHHHHhcchhhcchhhhhHHhhhhhccccceehhhcccCcc
Confidence 3567787777 799999999999987665433 333333332222211 122688999886542 11
Q ss_pred --------------CceeeEEee----ccccccHHHHHHHHHHHHHHHc-CCcEEEEEEccCChhHHHHHHHcCCeEeeE
Q 047740 73 --------------SLSASITKL----NYRGQGRGEALLEAAIKKCRTR-TVLRKTLHVDPLRTPAVNLYKKFGFQVDTL 133 (154)
Q Consensus 73 --------------~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~ 133 (154)
+....|..+ +||.+|+|..|+...++..-++ -..++.+-+. .+.+.||+++||+.++.
T Consensus 85 E~lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h---~pLvPFYEr~gFk~vgp 161 (190)
T KOG4144|consen 85 ERLTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICH---DPLVPFYERFGFKAVGP 161 (190)
T ss_pred hhhhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeec---CCccchhHhcCceeecc
Confidence 223555555 9999999999999977777666 4456666654 57899999999999986
Q ss_pred e
Q 047740 134 I 134 (154)
Q Consensus 134 ~ 134 (154)
.
T Consensus 162 ~ 162 (190)
T KOG4144|consen 162 C 162 (190)
T ss_pred c
Confidence 4
No 69
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.77 E-value=1.5e-07 Score=50.33 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=46.5
Q ss_pred EEEECCeEEEEEEEEeCCCceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHH
Q 047740 55 YIQIHGQVVGYVMYAWPTSLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKK 125 (154)
Q Consensus 55 ~~~~~~~ivG~~~~~~~~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~ 125 (154)
.+..+|+.+|++.+.. .+....+... ++||+|+|+.|++.++++++++|.+ |...| +-+.+++++
T Consensus 3 ~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~k-v~p~C----~y~~~~~~~ 71 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLK-VVPTC----SYVAKYFRR 71 (78)
T ss_dssp EEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-E-EEETS----HHHHHHHHH
T ss_pred EEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCE-EEEEC----HHHHHHHHh
Confidence 4455788999999965 4444444444 9999999999999999999999875 33332 445556554
No 70
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=98.75 E-value=2.7e-07 Score=53.16 Aligned_cols=89 Identities=17% Similarity=0.259 Sum_probs=55.7
Q ss_pred HHHHHHhhcCCceEEEEEECCeEEEEEEEEeCCCceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEcc-
Q 047740 40 RSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDP- 114 (154)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~- 114 (154)
+.+...+ +.....+.+.-|++++|.+.+.. .+..+.+..+ .=|++|+|..|++.+.+.+ .+++...+....
T Consensus 28 ~~l~~~l-~~~~~l~aArFNdRlLgAv~v~~-~~~~~~L~~l~VRevTRrRGVG~yLlee~~rq~--p~i~~w~l~~~~~ 103 (128)
T PF12568_consen 28 EQLEQWL-DEGHRLFAARFNDRLLGAVKVTI-SGQQAELSDLCVREVTRRRGVGLYLLEEVLRQL--PDIKHWWLADEGV 103 (128)
T ss_dssp ---------SSEEEEEEEETTEEEEEEEEEE-ETTEEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-
T ss_pred HHHHHHh-ccCCeEEEEEechheeeeEEEEE-cCcceEEeeEEEeeccccccHHHHHHHHHHHHC--CCCcEEEEecCCC
Confidence 3444434 45667788888999999999965 4557777777 7899999999999998877 355566665332
Q ss_pred --CC-hhHHHHHHHcCCeEee
Q 047740 115 --LR-TPAVNLYKKFGFQVDT 132 (154)
Q Consensus 115 --~n-~~a~~~y~~~Gf~~~~ 132 (154)
.+ .....|...+||...+
T Consensus 104 ~~~~~~~~~~Fm~a~GF~~~~ 124 (128)
T PF12568_consen 104 EPQDRAVMAAFMQACGFSAQS 124 (128)
T ss_dssp S--THHHHHHHHHHHT-EE-S
T ss_pred cccchHHHHHHHHHcCccccC
Confidence 23 3456888999996543
No 71
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.69 E-value=2.8e-07 Score=51.19 Aligned_cols=63 Identities=24% Similarity=0.291 Sum_probs=50.9
Q ss_pred CCceEEEEEECCeEEEEEEEEeCCCceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEE
Q 047740 49 KNSGLLYIQIHGQVVGYVMYAWPTSLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLH 111 (154)
Q Consensus 49 ~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~ 111 (154)
.....++..++|+.+|.+......++...+... ++||||+|++|++.+++.+++.|.+.+=++
T Consensus 13 ~~~~~y~~~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kiiP~C 79 (99)
T COG2388 13 GENGRYVLTDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKIIPLC 79 (99)
T ss_pred cCceEEEEecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEcccc
Confidence 445677778899999999997666566666555 999999999999999999999988655444
No 72
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=1e-05 Score=51.04 Aligned_cols=144 Identities=17% Similarity=0.117 Sum_probs=95.1
Q ss_pred CcccccccccCCCchhhHHHHHHHhhhhCCCcH--HHHHHHHHHhhcCCceEEEEEEC-CeEEEEEEEEeCC-CceeeEE
Q 047740 4 NGTVTELQRNSTNWTFVVDEIVKMEKKIFPKHE--SLARSFDEDLKKKNSGLLYIQIH-GQVVGYVMYAWPT-SLSASIT 79 (154)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~ivG~~~~~~~~-~~~~~i~ 79 (154)
.+.+|.++... ++++..++....|.... .........+...+...+.++.+ |++||.....+.. ....+..
T Consensus 2 ~vvvrrl~dp~-----el~~~~dV~~~aWg~~d~~~~~~d~i~al~~~GGlvlgAf~~dg~lVGls~G~pg~r~g~~y~y 76 (266)
T COG3375 2 KVVVRRLTDPA-----ELDEAEDVQASAWGSEDRDGAPADTIRALRYHGGLVLGAFSADGRLVGLSYGYPGGRGGSLYLY 76 (266)
T ss_pred ceeEEecCCHH-----HHHHHHHHHHHHhCccccccchHHHHHHHHhcCCeEEEEEcCCCcEEEEEeccCCcCCCceeee
Confidence 45677776442 56777777666664322 12222333455566777777774 5999998775411 2222221
Q ss_pred -ee-----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChh-HHHHHHHcCCeEeeEeeecccCCC---------c
Q 047740 80 -KL-----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTP-AVNLYKKFGFQVDTLIQGYYSADR---------P 143 (154)
Q Consensus 80 -~~-----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~-a~~~y~~~Gf~~~~~~~~~~~~~~---------~ 143 (154)
.+ ++|++|+|-+|-..--+.+..+|+..+.++-+|-|.- |.=-..|+|-...-.+++||..-. |
T Consensus 77 SH~~gV~e~~k~sglg~aLK~~Qre~a~~~G~tli~WTfDPl~alNA~fNi~KLGa~artYi~nfYg~m~dgINrGm~sD 156 (266)
T COG3375 77 SHMLGVREEVKGSGLGVALKMKQRERALSMGYTLIAWTFDPLNALNARFNISKLGAIARTYIKNFYGEMADGINRGMRSD 156 (266)
T ss_pred eeehhccccccccchhhhhHHHHHHHHHhcCeeeEEEecccchhhhhhcchhhhceeEEEeeccccchhchhhccccccc
Confidence 12 9999999999999999999999999999999888753 333346888877777788887532 5
Q ss_pred eEEEEeecC
Q 047740 144 AYRMYIDFD 152 (154)
Q Consensus 144 ~~~m~~~l~ 152 (154)
..+-+..|+
T Consensus 157 RlVaeWwl~ 165 (266)
T COG3375 157 RLVAEWWLN 165 (266)
T ss_pred ceEEEEecC
Confidence 555555443
No 73
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=98.51 E-value=1.2e-05 Score=59.69 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=77.6
Q ss_pred HHHHHHHhhcCCceEEEEEECC-eEEEEEEEEeCCCc------------------------------------eeeEEee
Q 047740 39 ARSFDEDLKKKNSGLLYIQIHG-QVVGYVMYAWPTSL------------------------------------SASITKL 81 (154)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~-~ivG~~~~~~~~~~------------------------------------~~~i~~~ 81 (154)
+..+......++..++++..++ ++|+.+.+...+.. ...|..|
T Consensus 458 P~DL~~L~DaP~h~~~al~~~~~~~va~~qva~EG~l~~~~i~~~~~g~r~~GnlIp~~l~~~~~~~~fa~l~G~RIvRI 537 (758)
T COG1444 458 PNDLRRLLDAPHHHIFALRAPEGKPVAVWQVAEEGGLSDELIDIWLGGRRPRGNLIPDLLAKHHRDPEFAKLVGWRIVRI 537 (758)
T ss_pred HHHHHHHhcCCCCeeEEEEcCCCceEEEEEeeccCCCcHHHHHHHhcCCCCCCcccHHHHHHhhcchhhcccceeeEEEE
Confidence 3455566666777777777665 88888876532211 1334445
Q ss_pred ----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeecc-cCCCceEEEEeecCC
Q 047740 82 ----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYY-SADRPAYRMYIDFDS 153 (154)
Q Consensus 82 ----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~-~~~~~~~~m~~~l~~ 153 (154)
++|++|||+++++.++++++ .+++.+-.. ...++.-.+||.|+||.++..-+..- ..|+=.++|.++|+.
T Consensus 538 AvhPe~q~~GiGsrlL~~l~~~a~-~~~Dwlgvs-FG~t~~L~rFW~rnGF~pVhls~~rn~~SGeys~i~lkpLs~ 612 (758)
T COG1444 538 AVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVS-FGYTEELLRFWLRNGFVPVHLSPTRNASSGEYTAIVLKPLSD 612 (758)
T ss_pred EeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeec-cCCCHHHHHHHHHcCeEEEEecCccCcCCCceeEEEEecCCH
Confidence 99999999999999999997 455544333 34567899999999999998664432 234456777777753
No 74
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=98.51 E-value=9.5e-07 Score=59.20 Aligned_cols=80 Identities=19% Similarity=0.291 Sum_probs=61.9
Q ss_pred eEEEEEECCeEEEEEEEEe----CCCc---eeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHH
Q 047740 52 GLLYIQIHGQVVGYVMYAW----PTSL---SASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAV 120 (154)
Q Consensus 52 ~~~~~~~~~~ivG~~~~~~----~~~~---~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~ 120 (154)
...+..++.++++-....+ .+++ ...|+.+ +|||+|..++|+.+.++...+.|+....|+ +.+.
T Consensus 40 n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~-----P~s~ 114 (389)
T COG4552 40 NSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALH-----PFSG 114 (389)
T ss_pred cceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEec-----cCch
Confidence 3566677888888877642 2232 2344444 999999999999999999999999877776 6678
Q ss_pred HHHHHcCCeEeeEeee
Q 047740 121 NLYKKFGFQVDTLIQG 136 (154)
Q Consensus 121 ~~y~~~Gf~~~~~~~~ 136 (154)
++|+|+||........
T Consensus 115 ~iYrKfGye~asn~~~ 130 (389)
T COG4552 115 GIYRKFGYEYASNYHE 130 (389)
T ss_pred hhHhhccccccceEEE
Confidence 9999999998876543
No 75
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.33 E-value=6.8e-06 Score=53.92 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=61.6
Q ss_pred EEEEE-ECCeEEEEEEEEeCCCceeeEEee-ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeE
Q 047740 53 LLYIQ-IHGQVVGYVMYAWPTSLSASITKL-NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQV 130 (154)
Q Consensus 53 ~~~~~-~~~~ivG~~~~~~~~~~~~~i~~~-~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~ 130 (154)
.++++ +++++|++.++.- +..-.+..- .+||.|++-+|+.++++.+.+.|...+++.+-+. ...+|+.+||.+
T Consensus 38 ~v~~~~~~~~iiacGsiaG--nvikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~---~~~lFk~~GF~~ 112 (352)
T COG3053 38 FVAIYRDNEEIIACGSIAG--NVIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPE---YAALFKQCGFSE 112 (352)
T ss_pred EEEEEcCCCcEEEeccccc--ceeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechh---HHHHHHhCCceE
Confidence 34444 4699999999851 111112222 9999999999999999999999999999998765 578999999999
Q ss_pred eeEeeec
Q 047740 131 DTLIQGY 137 (154)
Q Consensus 131 ~~~~~~~ 137 (154)
+...+..
T Consensus 113 i~~~~~~ 119 (352)
T COG3053 113 IASAENV 119 (352)
T ss_pred eeccCce
Confidence 8866543
No 76
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.02 E-value=9.1e-05 Score=52.15 Aligned_cols=123 Identities=12% Similarity=0.153 Sum_probs=81.8
Q ss_pred cccccccccCCCchhhHHHHHHHhhhhC----CCcHHHHHHHHHHhhcCCceEEEEE--E---CCeEEEEEEEEeCCCce
Q 047740 5 GTVTELQRNSTNWTFVVDEIVKMEKKIF----PKHESLARSFDEDLKKKNSGLLYIQ--I---HGQVVGYVMYAWPTSLS 75 (154)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~ivG~~~~~~~~~~~ 75 (154)
+++++.+.. +++.+.++...+- .......+...+...+++...+-+. | |+-+||++.+.. .+..
T Consensus 414 l~vs~~de~------~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~k-k~~~ 486 (574)
T COG3882 414 LTVSKFDEV------NIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVEK-KESE 486 (574)
T ss_pred EEEeecccc------CcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEEEe-cCCe
Confidence 455556555 5777777755432 1222223444443333333322222 1 578999998854 3345
Q ss_pred eeEEee--ccc--cccHHHHHHHHHHHHHHHcCCcEEEEEEc--cCChhHHHHHHHcCCeEeeEe
Q 047740 76 ASITKL--NYR--GQGRGEALLEAAIKKCRTRTVLRKTLHVD--PLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 76 ~~i~~~--~~r--g~Gig~~ll~~~~~~~~~~g~~~i~~~~~--~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
+.|..+ ..| ||++-++|+..+++.|...|...+...-. ..|.+...||+++||+..++-
T Consensus 487 w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~en 551 (574)
T COG3882 487 WFIDTFLMSCRVLGRKVEQRLMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFKLKGEN 551 (574)
T ss_pred EEhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhcccccccc
Confidence 556555 444 99999999999999999999999988754 458899999999999966643
No 77
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=98.00 E-value=0.001 Score=41.58 Aligned_cols=129 Identities=12% Similarity=0.133 Sum_probs=80.1
Q ss_pred hHHHHHHHhhhhCCCc--HHHH--H-HHHHHhhcCCceEEEEEECCeEEEEEEEEeCCC---------------------
Q 047740 20 VVDEIVKMEKKIFPKH--ESLA--R-SFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTS--------------------- 73 (154)
Q Consensus 20 ~~~~~~~~~~~~~~~~--~~~~--~-~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~--------------------- 73 (154)
+++++..+....|... |... . .-...+.+....++++.++|+++|++.+.+...
T Consensus 9 ~l~~~~rlR~~vFv~rlgW~v~~~dg~E~DqyD~~~~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~ 88 (182)
T PF00765_consen 9 LLEEMFRLRHRVFVDRLGWDVPCEDGMEIDQYDDPDAVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSP 88 (182)
T ss_dssp HHHHHHHHHHHHHTTCSCCCHHCCTSEE--TTGCTT-EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SST
T ss_pred HHHHHHHHHHHHHHHhhCCCCcCCCCcEeeecCCCCCeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCC
Confidence 6778888888877532 2211 1 222334445666777788999999999874321
Q ss_pred ceeeEEee----cc------ccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeecccCCCc
Q 047740 74 LSASITKL----NY------RGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYSADRP 143 (154)
Q Consensus 74 ~~~~i~~~----~~------rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~~~ 143 (154)
...++..+ +. ...-+...|+..+.++|.++|++.+..-+. .+..+++++.||.....-.....++..
T Consensus 89 ~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~---~~~~r~l~r~G~~~~~lG~~~~~~~~~ 165 (182)
T PF00765_consen 89 DVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVD---PAMERILRRAGWPVRRLGPPRSIGGER 165 (182)
T ss_dssp TEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEE---HHHHHHHHHCT-EEEESSEEEEETTEE
T ss_pred cceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEEC---hHHHHHHHHcCCceEECCCCeeeCCeE
Confidence 23444444 21 122467899999999999999999887764 678999999999876544433334444
Q ss_pred eEEEEeec
Q 047740 144 AYRMYIDF 151 (154)
Q Consensus 144 ~~~m~~~l 151 (154)
.+....++
T Consensus 166 ~~a~~i~v 173 (182)
T PF00765_consen 166 VVALLIPV 173 (182)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEC
Confidence 44444443
No 78
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=97.99 E-value=3.8e-05 Score=50.99 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=56.2
Q ss_pred ccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeecccCCCceEEEEeecCC
Q 047740 86 QGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYSADRPAYRMYIDFDS 153 (154)
Q Consensus 86 ~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~~~l~~ 153 (154)
.|-...++..+.+.|.+.|+.+|.+.|..+ ...+|++.||...+.++.||.. .|.++|.+.|..
T Consensus 20 ~~~~~~~~~~~~~~a~~~~~~ki~~~~~~~---~~~~~~~~g~~~e~~i~~~f~g-~~~~~~~~~~~~ 83 (266)
T TIGR03827 20 GNDVEALIPDLDALAKKEGYTKIIAKVPGS---DKPLFEERGYLEEAKIPGYFNG-HDAYFMSKYLDE 83 (266)
T ss_pred CccHHHHHHHHHHHHHHcCCcEEEEEccHH---HHHHHHHCCCeEEEecccccCC-CceEEEEEcCch
Confidence 345789999999999999999999998866 4889999999999999999865 789999998753
No 79
>PHA00432 internal virion protein A
Probab=97.79 E-value=0.00052 Score=40.38 Aligned_cols=79 Identities=8% Similarity=-0.066 Sum_probs=51.5
Q ss_pred CceEEEEEECCeEEEEEEEEeCCCceeeEEee-----ccccccHHHHHHHHHHHHHHHc--CCcEEEEEEccCChhHHHH
Q 047740 50 NSGLLYIQIHGQVVGYVMYAWPTSLSASITKL-----NYRGQGRGEALLEAAIKKCRTR--TVLRKTLHVDPLRTPAVNL 122 (154)
Q Consensus 50 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~-----~~rg~Gig~~ll~~~~~~~~~~--g~~~i~~~~~~~n~~a~~~ 122 (154)
+..++....+|++++.+. +....++.+ +--.++.-++..+.+..+.... .+..++=.|...|..+++|
T Consensus 36 s~~~~~~~~~G~~~aI~G-----n~G~~vW~v~T~~v~~~~~~~~reF~k~~~~~ld~ml~~yp~LwNyV~~~N~~hir~ 110 (137)
T PHA00432 36 DSECVTLSLDGFVLAIGG-----NQGDQVWFVTSDQVWRLTKKEKREFRKLIMEYRDMMLDQYPSLWNYVWVGNKSHIRF 110 (137)
T ss_pred CceEEEEecCCeEEEEec-----CCCCceEEEecHHhhhCChhhhHHHHHHHHHHHHHHHHhhhhhheeeecCCHHHHHH
Confidence 445777777999988873 223334444 1112233344444444444332 4777777899999999999
Q ss_pred HHHcCCeEeeE
Q 047740 123 YKKFGFQVDTL 133 (154)
Q Consensus 123 y~~~Gf~~~~~ 133 (154)
.+.+||+....
T Consensus 111 Lk~lGf~f~~e 121 (137)
T PHA00432 111 LKSIGAVFHNE 121 (137)
T ss_pred HHHcCeeeecc
Confidence 99999999875
No 80
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=97.78 E-value=4.8e-05 Score=53.13 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=42.6
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEee
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
.||++|+|++|++.+++.|++.+..++.+. +-..++..|.|+||...|
T Consensus 461 ~~QH~G~G~~L~~~AE~ia~ee~~~ki~vi---SgiG~ReYy~k~GY~~~g 508 (515)
T COG1243 461 EWQHRGYGRELLEEAERIAREEGAKKILVI---SGIGVREYYRKLGYELDG 508 (515)
T ss_pred hhhcccHHHHHHHHHHHHHHhhccccEEEE---ecccHHHHHHHhCccccC
Confidence 899999999999999999999988877765 336789999999998876
No 81
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=97.67 E-value=7.9e-05 Score=42.50 Aligned_cols=39 Identities=49% Similarity=0.796 Sum_probs=36.0
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCC
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGF 128 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf 128 (154)
++||+|+|+.|++.+++.+...|+. .|..+..+|.+.||
T Consensus 92 ~~rg~Gig~~Ll~~~~~~~~~~g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 92 EYRGKGIGSALLEAALEWARKRGIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred hhhccchHHHHHHHHHHHHHHcCce--------ehHHHHHHHHhcCC
Confidence 9999999999999999999997765 67889999999998
No 82
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=97.58 E-value=0.0047 Score=36.59 Aligned_cols=62 Identities=18% Similarity=0.096 Sum_probs=47.7
Q ss_pred CceEEEEEECCeEEEEEEEEeCCCceeeEEe--e--ccccccHHHHHHHHHHHHHHHcCCcEEEEEE
Q 047740 50 NSGLLYIQIHGQVVGYVMYAWPTSLSASITK--L--NYRGQGRGEALLEAAIKKCRTRTVLRKTLHV 112 (154)
Q Consensus 50 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~--~--~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~ 112 (154)
....+++..+|++||+.......+ ..+... . +++..+.|..|+..+++++.+.|+..+-+..
T Consensus 70 ~~~l~~~~~~g~~va~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~ 135 (142)
T PF13480_consen 70 RLRLFVLYDGGEPVAFALGFRHGG-TLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGG 135 (142)
T ss_pred CEEEEEEEECCEEEEEEEEEEECC-EEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 445667778999999987754333 333333 2 8999999999999999999999998877764
No 83
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.40 E-value=0.012 Score=37.19 Aligned_cols=129 Identities=13% Similarity=0.167 Sum_probs=80.1
Q ss_pred hHHHHHHHhhhhCCCcHHH-----HHHHHHHhhcCCceEEEE-EECCeEEEEEEEEeCCC--------------------
Q 047740 20 VVDEIVKMEKKIFPKHESL-----ARSFDEDLKKKNSGLLYI-QIHGQVVGYVMYAWPTS-------------------- 73 (154)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~ivG~~~~~~~~~-------------------- 73 (154)
.++++..+..+.|...... ...-.+.+.+.+..++++ ..+|+++|++.+.+...
T Consensus 16 ~l~em~rlR~~vF~erL~W~v~~~~g~E~DqyD~~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~ 95 (209)
T COG3916 16 ALEEMHRLRYQVFKERLGWDVVCIDGFEIDQYDNLDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSS 95 (209)
T ss_pred HHHHHHHHHHHHHHHhcCCceeccCCccccccCCCCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCC
Confidence 5677777777777432111 112223344555666777 56899999998863221
Q ss_pred -ceeeEEee---------cccccc-HHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeecccCCC
Q 047740 74 -LSASITKL---------NYRGQG-RGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYYSADR 142 (154)
Q Consensus 74 -~~~~i~~~---------~~rg~G-ig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~~ 142 (154)
...+...+ ...+.. ++.+|+.-+++++.+.|++.|...+. ....+.+++.||.....-+.--..++
T Consensus 96 p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~---~~meril~r~Gw~~~riG~~~~ig~~ 172 (209)
T COG3916 96 PGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVTD---TGMERILRRAGWPLTRIGPPLTIGNE 172 (209)
T ss_pred CCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEEc---hHHHHHHHHcCCCeEEcCCceeeCCe
Confidence 12333333 223333 47799999999999999999987765 57899999999987664433322333
Q ss_pred ceEEEEeec
Q 047740 143 PAYRMYIDF 151 (154)
Q Consensus 143 ~~~~m~~~l 151 (154)
..+-..+++
T Consensus 173 ~~VA~~l~i 181 (209)
T COG3916 173 RAVALLLDI 181 (209)
T ss_pred eEEEEEeec
Confidence 444444444
No 84
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=97.33 E-value=0.016 Score=37.10 Aligned_cols=110 Identities=9% Similarity=0.150 Sum_probs=70.6
Q ss_pred hhHHHHHHHhhhhCCCcHHH----HHHH-HHHhhcCCceEEEEE-ECCeEEEEEEEEeCC--------------------
Q 047740 19 FVVDEIVKMEKKIFPKHESL----ARSF-DEDLKKKNSGLLYIQ-IHGQVVGYVMYAWPT-------------------- 72 (154)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~-~~~~ivG~~~~~~~~-------------------- 72 (154)
.+++++..+...+|.....+ .... ...+......+++.. ++|++||++.+.+..
T Consensus 16 ~~l~~~~rLR~~VF~~elgW~~~~~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~ 95 (207)
T PRK13834 16 SLLKQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNA 95 (207)
T ss_pred HHHHHHHHHHHHHhccccCCCCCCCCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCC
Confidence 46888888888877532111 1111 222344445566555 478999999875321
Q ss_pred -CceeeEEee----cc---cccc----HHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEe
Q 047740 73 -SLSASITKL----NY---RGQG----RGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVD 131 (154)
Q Consensus 73 -~~~~~i~~~----~~---rg~G----ig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~ 131 (154)
+..++++.+ ++ ++.+ +...|+..+.+++...|++.+..-+.+ ...++++++|+...
T Consensus 96 ~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~---~~~r~l~r~G~~~~ 163 (207)
T PRK13834 96 HPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDL---RFERILARAGWPMQ 163 (207)
T ss_pred CCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECH---HHHHHHHHcCCCeE
Confidence 122344444 33 2222 667899999999999999998877653 57789999998764
No 85
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=97.21 E-value=0.0068 Score=39.79 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEe
Q 047740 88 RGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVD 131 (154)
Q Consensus 88 ig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~ 131 (154)
+...|+..+.++|...|++.+...+.+ ...++++++|+...
T Consensus 156 ~~~~L~~~~~~~a~~~Gi~~~~~v~~~---~l~r~l~r~G~~~~ 196 (241)
T TIGR03694 156 IPLGLYLGLIALSSANGITHWYAIMEP---RLARLLSRFGIQFR 196 (241)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCH---HHHHHHHHhCCceE
Confidence 567899999999999999988887654 57889999998654
No 86
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=97.11 E-value=0.0011 Score=45.10 Aligned_cols=48 Identities=25% Similarity=0.426 Sum_probs=40.6
Q ss_pred ccccccHHHHHHHHHHHHHHHc-CCcEEEEEEccCChhHHHHHHHcCCeEee
Q 047740 82 NYRGQGRGEALLEAAIKKCRTR-TVLRKTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
.||.+|+|+-|+++++..|++. |-.++.+.. -....+.|.|+||+..|
T Consensus 498 KfQHQG~GtLLmeEAERIAr~EHgS~KiavIS---GVGtR~YY~klGY~LdG 546 (554)
T KOG2535|consen 498 KFQHQGFGTLLMEEAERIAREEHGSGKIAVIS---GVGTRNYYRKLGYELDG 546 (554)
T ss_pred hhhhcchhhHHHHHHHHHHHHhcCCCceEEEe---ccchHHHHHhhCeeecC
Confidence 9999999999999999999987 777776652 24568899999999876
No 87
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=97.10 E-value=0.017 Score=39.65 Aligned_cols=94 Identities=19% Similarity=0.245 Sum_probs=50.3
Q ss_pred CcccccccccCCCchhhHHHHHHHhhhhC------CCcHH-H-------HHHHHHHhh-c--CCceEEEEEE--CCeEEE
Q 047740 4 NGTVTELQRNSTNWTFVVDEIVKMEKKIF------PKHES-L-------ARSFDEDLK-K--KNSGLLYIQI--HGQVVG 64 (154)
Q Consensus 4 ~~~ir~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~-------~~~~~~~~~-~--~~~~~~~~~~--~~~ivG 64 (154)
|+.|||++.+ |++++..+-...- |.+.. . ...+..... . +..+.++.++ .|++||
T Consensus 1 M~viRp~~~~------Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvG 74 (342)
T PF04958_consen 1 MLVIRPARPS------DLDALYALARESGPGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVG 74 (342)
T ss_dssp -EEEEE--GG------GHHHHHHHHHHS-TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEE
T ss_pred CeEEecCchh------hHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEE
Confidence 4679999999 7888888865542 33222 1 122221121 1 1234556665 699999
Q ss_pred EEEEEeCC------------------------------------CceeeEEee----ccccccHHHHHHHHHHHHHHHc
Q 047740 65 YVMYAWPT------------------------------------SLSASITKL----NYRGQGRGEALLEAAIKKCRTR 103 (154)
Q Consensus 65 ~~~~~~~~------------------------------------~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~ 103 (154)
++.+...- ....++..+ +||+.|.|+.|-+.-.-++.+.
T Consensus 75 ts~I~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~ 153 (342)
T PF04958_consen 75 TSAIEAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQH 153 (342)
T ss_dssp EEEEESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-
T ss_pred EEeEEeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhC
Confidence 99876111 112334444 9999999999988766665543
No 88
>PHA01733 hypothetical protein
Probab=97.02 E-value=0.0046 Score=37.10 Aligned_cols=86 Identities=16% Similarity=0.049 Sum_probs=52.9
Q ss_pred CCceEEEEEECCeEEEEEEEEeC-CCceeeEEee-ccccccHHHHHHHHHHHHHH-HcCCcEEEEEEccCChhHHHHHHH
Q 047740 49 KNSGLLYIQIHGQVVGYVMYAWP-TSLSASITKL-NYRGQGRGEALLEAAIKKCR-TRTVLRKTLHVDPLRTPAVNLYKK 125 (154)
Q Consensus 49 ~~~~~~~~~~~~~ivG~~~~~~~-~~~~~~i~~~-~~rg~Gig~~ll~~~~~~~~-~~g~~~i~~~~~~~n~~a~~~y~~ 125 (154)
.....+....+|+++|.++.... .+..+..+.+ .=.=..+-.+.+.++-.... ...+..++=.|...|..+++|.+.
T Consensus 45 s~~~v~~~~~nG~l~aI~Gv~~d~~~~vG~pWlV~T~~v~k~~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~ 124 (153)
T PHA01733 45 SENVVAFVAPDGSLAGVAGLVEDMGNRVGEIWMVCTPAIEKNPIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRK 124 (153)
T ss_pred cccceEEEecCCcEEEEecccccccCCCCceeEEecHHhHhCCHHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHH
Confidence 33333555558999999988642 2344555555 00000122333333333333 336677777799999999999999
Q ss_pred cCCeEeeEe
Q 047740 126 FGFQVDTLI 134 (154)
Q Consensus 126 ~Gf~~~~~~ 134 (154)
+||+.....
T Consensus 125 lGF~f~~~~ 133 (153)
T PHA01733 125 LGFKGLRYV 133 (153)
T ss_pred cCceeeccc
Confidence 999988754
No 89
>PRK14852 hypothetical protein; Provisional
Probab=96.93 E-value=0.011 Score=45.90 Aligned_cols=99 Identities=19% Similarity=0.232 Sum_probs=69.8
Q ss_pred CceEEEEEECCeEEEEEEEEeCCCc----------------------eeeEEee--ccccc--cHHHHHHHHHHHHHHHc
Q 047740 50 NSGLLYIQIHGQVVGYVMYAWPTSL----------------------SASITKL--NYRGQ--GRGEALLEAAIKKCRTR 103 (154)
Q Consensus 50 ~~~~~~~~~~~~ivG~~~~~~~~~~----------------------~~~i~~~--~~rg~--Gig~~ll~~~~~~~~~~ 103 (154)
+...+++...++++|...+..+++. .+++..+ +++++ -+--.+++.+..++...
T Consensus 74 ~t~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~ 153 (989)
T PRK14852 74 ATSVFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMS 153 (989)
T ss_pred cceEEEeccCCcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHc
Confidence 3445666666788888877654331 1333333 44443 35557778888888777
Q ss_pred CCcEEEEEEccCChhHHHHHHH-cCCeEeeEeeecccCCCceEEEEeec
Q 047740 104 TVLRKTLHVDPLRTPAVNLYKK-FGFQVDTLIQGYYSADRPAYRMYIDF 151 (154)
Q Consensus 104 g~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~~~~~~~~~~~~~m~~~l 151 (154)
+++.+.+.|+|.+ ..||++ +||+..+..+.|..-+.+.+.|..++
T Consensus 154 ~~dd~~i~VnPkH---~~FY~r~l~f~~ig~~r~~p~VnaPAvll~~dl 199 (989)
T PRK14852 154 EVDDILVTVNPKH---VKFYTDIFLFKPFGEVRHYDTVDAPAVALRIDL 199 (989)
T ss_pred CCCeEEEEECcch---HHHHHHHhCCccccccccCCCCCcchhheecCH
Confidence 9999999998887 679995 89999998876766666788887765
No 90
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=96.85 E-value=0.036 Score=32.63 Aligned_cols=75 Identities=11% Similarity=0.077 Sum_probs=54.0
Q ss_pred HHHHHHHhhcC--CceEEEEEECCeEEEEEEEEeCCCceeeEEee---ccccccHHHHHHHHHHHHHHHcCCcEEEEEEc
Q 047740 39 ARSFDEDLKKK--NSGLLYIQIHGQVVGYVMYAWPTSLSASITKL---NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVD 113 (154)
Q Consensus 39 ~~~~~~~~~~~--~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~---~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~ 113 (154)
.+.+...+... +...+-...+|++||.+.+...++....+-.+ ++..+++|+-.+-.-++.|++.|.+.+++.-.
T Consensus 25 ~~~y~~fl~~~~~~t~~~~~~~~~kLiav~v~D~l~~glSaVY~fyDPd~~~~SlG~~~iL~eI~~a~~~~l~y~YLGY~ 104 (128)
T PF04377_consen 25 QEQYRRFLCSSPLGTYHLEYRLDGKLIAVAVVDILPDGLSAVYTFYDPDYSKRSLGTYSILREIELARELGLPYYYLGYW 104 (128)
T ss_pred HHHHHHHHhCCCCCCEEEEEEeCCeEEEEEEeecccchhhheeeeeCCCccccCcHHHHHHHHHHHHHHcCCCEEeeCeE
Confidence 34444444433 23344445699999999886544444444444 99999999999999999999999999998744
No 91
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=96.81 E-value=0.038 Score=32.29 Aligned_cols=98 Identities=12% Similarity=0.015 Sum_probs=69.6
Q ss_pred CCceEEEEEECCeEEEEEEEEeCCCceeeEEee---ccccccHHHHHHHHHHHHHHHc-CCcEEEEEEccCChhHHHHHH
Q 047740 49 KNSGLLYIQIHGQVVGYVMYAWPTSLSASITKL---NYRGQGRGEALLEAAIKKCRTR-TVLRKTLHVDPLRTPAVNLYK 124 (154)
Q Consensus 49 ~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~---~~rg~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~a~~~y~ 124 (154)
++..++.+.+++.++|+..+....+...+..-+ ++|| ++.+.-..+.++..+. ....+...+...-+-.+-...
T Consensus 36 ~~~~Y~gVyeg~~l~Gi~~v~~i~~~~vecHa~y~P~fRG--~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grvic~ 113 (151)
T PF11039_consen 36 PDQLYLGVYEGGQLGGIVYVEEIQPSVVECHAMYDPGFRG--YALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRVICR 113 (151)
T ss_pred CccEEEEEEeceEEEEEEEEEEEeeeeEEEEeeeccccch--hHHHHHHHHHHHHhcCCceeEEEEecccccccchhHhh
Confidence 456677788899999999986444444444444 9998 9999988999998887 454444444444445666667
Q ss_pred HcCCeEeeEeeecccCCCceEEEE
Q 047740 125 KFGFQVDTLIQGYYSADRPAYRMY 148 (154)
Q Consensus 125 ~~Gf~~~~~~~~~~~~~~~~~~m~ 148 (154)
=+|.+.+|.+.+++....+.-.+.
T Consensus 114 llg~~RVG~id~~~~g~~~vTlYq 137 (151)
T PF11039_consen 114 LLGARRVGHIDDYFKGVDGVTLYQ 137 (151)
T ss_pred hhCCceeeeHHHHhcCCCceEEEE
Confidence 799999999999887555555444
No 92
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=96.78 E-value=0.08 Score=36.46 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=63.4
Q ss_pred ceEEEEE-ECCeEEEEEEEEeCCCcee--eEEee-ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHc
Q 047740 51 SGLLYIQ-IHGQVVGYVMYAWPTSLSA--SITKL-NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKF 126 (154)
Q Consensus 51 ~~~~~~~-~~~~ivG~~~~~~~~~~~~--~i~~~-~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~ 126 (154)
..++++. .+|++||.+.+....+... +.+.. ++++.+-+..|.-+++++|.++|++..-+.....+....+|=+++
T Consensus 195 ~~l~~a~~~~g~~va~~l~~~~~~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~ 274 (330)
T TIGR03019 195 CEVLTVRLGDGVVASAVLSFYFRDEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNW 274 (330)
T ss_pred EEEEEEEeCCCCEEEEEEEEEeCCEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcC
Confidence 3445566 5888988866644333222 22222 889999999999999999999999999988665555667777889
Q ss_pred CCeEeeEeeecc
Q 047740 127 GFQVDTLIQGYY 138 (154)
Q Consensus 127 Gf~~~~~~~~~~ 138 (154)
||+++...-.|+
T Consensus 275 G~~~~~l~~~~~ 286 (330)
T TIGR03019 275 GFEPQPLHYEYL 286 (330)
T ss_pred CCeeccceEEEE
Confidence 999987654444
No 93
>PRK10456 arginine succinyltransferase; Provisional
Probab=96.64 E-value=0.033 Score=38.28 Aligned_cols=59 Identities=17% Similarity=0.347 Sum_probs=35.3
Q ss_pred cccccccccCCCchhhHHHHHHHhhhhC------CCcHH-HH-------HHHHHHhh-cCCceEEEEEE--CCeEEEEEE
Q 047740 5 GTVTELQRNSTNWTFVVDEIVKMEKKIF------PKHES-LA-------RSFDEDLK-KKNSGLLYIQI--HGQVVGYVM 67 (154)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~-------~~~~~~~~-~~~~~~~~~~~--~~~ivG~~~ 67 (154)
+.|||++.. |++++..+-...- |.+.. .. ..+..... .+..+.++.++ .|++||++.
T Consensus 2 ~vvRpv~~~------Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~ 75 (344)
T PRK10456 2 MVIRPVERS------DLAALMQLAGKTGGGLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICA 75 (344)
T ss_pred eEEecCccc------cHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEe
Confidence 689999999 7888888865543 33322 11 12211111 12344556554 699999998
Q ss_pred EE
Q 047740 68 YA 69 (154)
Q Consensus 68 ~~ 69 (154)
+.
T Consensus 76 I~ 77 (344)
T PRK10456 76 IE 77 (344)
T ss_pred EE
Confidence 75
No 94
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=96.41 E-value=0.064 Score=36.40 Aligned_cols=65 Identities=15% Similarity=0.046 Sum_probs=41.4
Q ss_pred CceEEEEEE-CCeEEEEEEEEeCC-CceeeEEee--ccc-cccHHHHHHHHHHHHHHHcCCcEEEEEEcc
Q 047740 50 NSGLLYIQI-HGQVVGYVMYAWPT-SLSASITKL--NYR-GQGRGEALLEAAIKKCRTRTVLRKTLHVDP 114 (154)
Q Consensus 50 ~~~~~~~~~-~~~ivG~~~~~~~~-~~~~~i~~~--~~r-g~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 114 (154)
+...+++.. +|+++|++.+.+.. .....+... .-- =+|+-..|+..+++.+++.|+..+.+...|
T Consensus 179 ~~~~~~~~~~dgki~af~~~~~~~~~~~~~~~~~k~~~~a~~G~~e~l~~~~~~~~~~~g~~~lnLg~ap 248 (299)
T PF09924_consen 179 GLRGFVARVADGKIVAFAIGSPLGGRDGWSIDFEKADPDAPKGIYEFLNVEFAEHLKAEGVEYLNLGFAP 248 (299)
T ss_dssp T-EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEEEEE-TT-STTHHHHHHHHHHHHS--TT--EEE-----
T ss_pred CceEEEEEECCCcEEEEEEEEEccCCccEEEEEEecCCCCCCcHHHHHHHHHHHhhhhCCceEEEccccc
Confidence 566777888 99999999997655 333333333 222 579999999999999998899988865443
No 95
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=96.26 E-value=0.12 Score=31.53 Aligned_cols=93 Identities=10% Similarity=0.147 Sum_probs=58.6
Q ss_pred hhhHHHHHHHhhhhCCCcH------HHHHHHHHHhhcCCc----eEEEEE--ECCeEEEEEEEEeC----CCc---eeeE
Q 047740 18 TFVVDEIVKMEKKIFPKHE------SLARSFDEDLKKKNS----GLLYIQ--IHGQVVGYVMYAWP----TSL---SASI 78 (154)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~----~~~~~~--~~~~ivG~~~~~~~----~~~---~~~i 78 (154)
..+++++..+.+..+..+. .+...+..+...++. ..+.+. .++++|||++..+. .+. ..+|
T Consensus 34 ~~~l~ely~lL~~nYVEDdd~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~eI 113 (162)
T PF01233_consen 34 DEELKELYELLNENYVEDDDNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVEI 113 (162)
T ss_dssp HHHHHHHHHHHHHHSSBTTTSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCccCCcceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeeeE
Confidence 4567888888777764332 234566665555432 234443 37999999987632 222 2334
Q ss_pred Eee----ccccccHHHHHHHHHHHHHHHcCCcEEEE
Q 047740 79 TKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTL 110 (154)
Q Consensus 79 ~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~ 110 (154)
..+ .+|+++++--|++++-..+...|+-....
T Consensus 114 NFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAvy 149 (162)
T PF01233_consen 114 NFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAVY 149 (162)
T ss_dssp EEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEEE
T ss_pred EEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeeee
Confidence 433 99999999999999999999887544433
No 96
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=96.06 E-value=0.22 Score=32.71 Aligned_cols=93 Identities=9% Similarity=0.017 Sum_probs=62.0
Q ss_pred HHHHHHhhcCC--ceEEEEEECCeEEEEEEEEeCCCceeeEEee---ccccccHHHHHHHHHHHHHHHcCCcEEEEEEcc
Q 047740 40 RSFDEDLKKKN--SGLLYIQIHGQVVGYVMYAWPTSLSASITKL---NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDP 114 (154)
Q Consensus 40 ~~~~~~~~~~~--~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~---~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 114 (154)
..+...+.... ...+-..++|++||.+.+....+....+..+ ++-.+++|+-.+-.-+++|++.|...+++.-.-
T Consensus 131 ~~y~~Fl~~~~~~t~~~ey~~~g~LiaVav~D~l~d~lSAVY~FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y~YLGY~I 210 (240)
T PRK01305 131 DQYAQFLEDSWVNTRFIEFRGDGKLVAVAVTDVLDDGLSAVYTFYDPDEEHRSLGTFAILWQIELAKRLGLPYVYLGYWI 210 (240)
T ss_pred HHHHHHHhcCCCCcEEEEEEeCCeEEEEEEEeccCCceeeEEEeeCCCccccCCHHHHHHHHHHHHHHcCCCeEeeeEEE
Confidence 44444444432 2333444699999999987655544445555 888889999999999999999999999998544
Q ss_pred CChhHHHHHHHcCCeEeeEe
Q 047740 115 LRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 115 ~n~~a~~~y~~~Gf~~~~~~ 134 (154)
.+ ..++-=|.-|++...+
T Consensus 211 ~~--c~kM~YK~~f~P~E~l 228 (240)
T PRK01305 211 KG--SRKMNYKARFRPLEIL 228 (240)
T ss_pred CC--CCcccccccCCcceee
Confidence 33 2223334455555544
No 97
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=95.96 E-value=0.1 Score=32.77 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=32.9
Q ss_pred eEEEEEEEEeCCCceeeEEee----ccccccHHHHHHHHHHHHHHHcC
Q 047740 61 QVVGYVMYAWPTSLSASITKL----NYRGQGRGEALLEAAIKKCRTRT 104 (154)
Q Consensus 61 ~ivG~~~~~~~~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g 104 (154)
.+|||.+=.........++.+ .||++|+|+-|++..-+.++..+
T Consensus 66 h~vGyFSKEk~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 66 HIVGYFSKEKESWDNNNLSCILTLPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp EEEEEEEEESS-TT-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred eeEEEEEEEecccCCeeEeehhhcchhhhcchhhhhhhhHHHHhhccC
Confidence 689998875444434445554 99999999999999988888765
No 98
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=95.83 E-value=0.11 Score=29.19 Aligned_cols=59 Identities=10% Similarity=0.094 Sum_probs=43.2
Q ss_pred EEEECCeEEEEEEEEeCC--CceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChh
Q 047740 55 YIQIHGQVVGYVMYAWPT--SLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTP 118 (154)
Q Consensus 55 ~~~~~~~ivG~~~~~~~~--~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~ 118 (154)
-++.++...|++.+.++. +...++..+ ..||+|+|..+...+.+. ...+...+.++|+.
T Consensus 12 ~~y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d-----~~~L~Wrsr~~n~~ 76 (99)
T cd04264 12 AIYLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRD-----FPKLFWRSRKTNPI 76 (99)
T ss_pred EEEEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhh-----CCceEEEeCCCCcc
Confidence 334466778888876544 466777777 889999999999988655 35788888877753
No 99
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=95.78 E-value=0.018 Score=29.99 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=17.2
Q ss_pred ccccccHHHHHHHHHHHHH
Q 047740 82 NYRGQGRGEALLEAAIKKC 100 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~ 100 (154)
.+|++|||+.|++.+.+..
T Consensus 16 ~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 16 SHRRKGIATRLLDAARENF 34 (70)
T ss_pred hhhhhhHHHHHHHHHHHhc
Confidence 9999999999999997764
No 100
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=95.71 E-value=0.24 Score=34.12 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=33.4
Q ss_pred cccccccCCCchhhHHHHHHHhhhhC------CCcHH--------HHHHHHHHhh--cCCceEEEEEE--CCeEEEEEEE
Q 047740 7 VTELQRNSTNWTFVVDEIVKMEKKIF------PKHES--------LARSFDEDLK--KKNSGLLYIQI--HGQVVGYVMY 68 (154)
Q Consensus 7 ir~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--------~~~~~~~~~~--~~~~~~~~~~~--~~~ivG~~~~ 68 (154)
|||++.. |++++..+....- |.+.. ....+..... .+..+.++.++ .|++||++.+
T Consensus 2 iRpv~~~------Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I 75 (336)
T TIGR03245 2 VRPSRFA------DLPAIERLANESAIGVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSI 75 (336)
T ss_pred cccCccc------cHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeE
Confidence 7888888 7888888865543 33322 1222211111 12345556654 6999999987
Q ss_pred E
Q 047740 69 A 69 (154)
Q Consensus 69 ~ 69 (154)
.
T Consensus 76 ~ 76 (336)
T TIGR03245 76 V 76 (336)
T ss_pred E
Confidence 5
No 101
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=95.61 E-value=0.29 Score=33.74 Aligned_cols=57 Identities=16% Similarity=0.296 Sum_probs=33.2
Q ss_pred cccccccCCCchhhHHHHHHHhhhhC------CCcHH--------HHHHHHHHhh-cCCceEEEEEE--CCeEEEEEEEE
Q 047740 7 VTELQRNSTNWTFVVDEIVKMEKKIF------PKHES--------LARSFDEDLK-KKNSGLLYIQI--HGQVVGYVMYA 69 (154)
Q Consensus 7 ir~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--------~~~~~~~~~~-~~~~~~~~~~~--~~~ivG~~~~~ 69 (154)
|||++.. |++++..+-...- |.+.. ....+..... .+..+.++.++ .|++||++.+.
T Consensus 2 vRpv~~~------Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~ 75 (335)
T TIGR03243 2 VRPVRTS------DLDALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIE 75 (335)
T ss_pred cccCccc------cHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEE
Confidence 7888888 7888888865543 33322 1223322111 12344556554 69999999875
No 102
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=95.58 E-value=0.25 Score=34.08 Aligned_cols=57 Identities=19% Similarity=0.375 Sum_probs=33.0
Q ss_pred cccccccCCCchhhHHHHHHHhhhhC------CCcHH-HH-------HHHHHHhh-cCCceEEEEEE--CCeEEEEEEEE
Q 047740 7 VTELQRNSTNWTFVVDEIVKMEKKIF------PKHES-LA-------RSFDEDLK-KKNSGLLYIQI--HGQVVGYVMYA 69 (154)
Q Consensus 7 ir~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~-------~~~~~~~~-~~~~~~~~~~~--~~~ivG~~~~~ 69 (154)
|||++.. |++++..+-...- |.+.. .. ..+..... .+..+.++.++ .|++||++.+.
T Consensus 2 vRPv~~~------Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~ 75 (336)
T TIGR03244 2 VRPVETS------DLDALYQLAQSTGIGLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIE 75 (336)
T ss_pred cccCccc------cHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEE
Confidence 7888888 7888888865543 33322 11 12211111 12344555554 59999999875
No 103
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=95.12 E-value=0.11 Score=34.73 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=33.5
Q ss_pred CCeEEEEEEEEeCCC---ceeeEEee-ccccccHHHHHHHHHHHHHHHcC
Q 047740 59 HGQVVGYVMYAWPTS---LSASITKL-NYRGQGRGEALLEAAIKKCRTRT 104 (154)
Q Consensus 59 ~~~ivG~~~~~~~~~---~~~~i~~~-~~rg~Gig~~ll~~~~~~~~~~g 104 (154)
+..+|||.+=...+. +.+.|-.+ .||++|+|+-|++..-+..+..|
T Consensus 139 g~h~vGYFSKEK~s~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 139 GSHIVGYFSKEKVSAEDYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred CcEEEEEeceeccccCCCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 457999987654333 33444444 99999999999999988887654
No 104
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=94.80 E-value=0.34 Score=34.57 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=59.8
Q ss_pred eEEEEEEC-CeEEEEEEEEeC-CCceeeEEee------ccccccHHHHHHHHHHHHHHHcCCcEEEEEE-----------
Q 047740 52 GLLYIQIH-GQVVGYVMYAWP-TSLSASITKL------NYRGQGRGEALLEAAIKKCRTRTVLRKTLHV----------- 112 (154)
Q Consensus 52 ~~~~~~~~-~~ivG~~~~~~~-~~~~~~i~~~------~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~----------- 112 (154)
..+.+.++ +.++|.+.+... ......+..+ +|...-+-..+++.+.++++++++-.+.+..
T Consensus 36 ~~vgv~~d~~~v~aa~ll~~~~~~~g~~~~yiprGPv~d~~d~ell~~f~~~Lk~~akk~~a~~lridP~~~~~~~~~~g 115 (406)
T PF02388_consen 36 ERVGVKDDGGEVAAAALLLRKKPFKGFKYAYIPRGPVMDYSDEELLEFFLEELKKYAKKKRALFLRIDPNVIYQERDEDG 115 (406)
T ss_dssp EEEEEE-TTS-EEEEEEEEEEECTTTCEEEEETT--EC-TT-HHHHHHHHHHHHHHHCTTTEEEEEE--S-EEECE-TTS
T ss_pred EEEEEEeCCCeEEEEEEEEEeccCCceeEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEeCchhhhhccccc
Confidence 34555555 677776655422 2212223333 8888899999999999999987654444431
Q ss_pred ----ccCChhHHHHHHHcCCeEeeEeeecccCCCceEEEEeecCC
Q 047740 113 ----DPLRTPAVNLYKKFGFQVDTLIQGYYSADRPAYRMYIDFDS 153 (154)
Q Consensus 113 ----~~~n~~a~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~~~l~~ 153 (154)
...|...+..++++||...+....+-....+.+.|.++|..
T Consensus 116 ~~~~~~~~~~~~~~l~~~G~~~~g~~~~~~~~~qpr~~~v~dL~~ 160 (406)
T PF02388_consen 116 EPIEGEENDELIENLKALGFRHQGFTKGYDDTIQPRWTYVKDLTG 160 (406)
T ss_dssp -EEEE-S-THHHHHHHHTT-CCTS-SSSTTSSSS-SEEEEEEGCC
T ss_pred ccccCcchHHHHHHHHhcCceecCcccCCCcccCccEEEEEECCC
Confidence 12356778999999999988665443334566778887754
No 105
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=94.77 E-value=0.42 Score=27.71 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=27.0
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHH
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKK 125 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~ 125 (154)
..|++|+|++|.+.+++.- ++..-.+.++...+...+|.+|
T Consensus 57 s~QR~G~Gk~LF~~ML~~e---~~~p~~~a~DrPS~Kll~Fl~K 97 (120)
T PF05301_consen 57 SRQRRGYGKRLFDHMLQEE---NVSPHQLAIDRPSPKLLSFLKK 97 (120)
T ss_pred ceeccCchHHHHHHHHHHc---CCCcccceecCCcHHHHHHHHH
Confidence 8999999999999997643 3333344444444555666654
No 106
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=94.60 E-value=0.39 Score=26.99 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=38.3
Q ss_pred CCeEEEEEEEEeCC-CceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChh
Q 047740 59 HGQVVGYVMYAWPT-SLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTP 118 (154)
Q Consensus 59 ~~~ivG~~~~~~~~-~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~ 118 (154)
++..=|++.+.++. +...++..+ ..||+|+|..|.+.+.+. ...+...+.++|+.
T Consensus 17 ~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d-----~~~L~Wrsr~~n~~ 76 (99)
T cd04265 17 SEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRD-----FPKLFWRSRSTNPI 76 (99)
T ss_pred eCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhh-----CCceEEEeCCCCcc
Confidence 44455555554433 456777777 889999999999988654 34677788877753
No 107
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=94.25 E-value=0.25 Score=30.56 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=48.1
Q ss_pred ccHHHHHHHHHHHHHHHc-CCcEEEEEEccCCh---hHHHHHHHcCCeEeeEeeecccCCCceEEEEeecCC
Q 047740 86 QGRGEALLEAAIKKCRTR-TVLRKTLHVDPLRT---PAVNLYKKFGFQVDTLIQGYYSADRPAYRMYIDFDS 153 (154)
Q Consensus 86 ~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~---~a~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~~~l~~ 153 (154)
-+.-++=+-+++++|.++ .++++.+....++. +-.+-+.-+||+++......-....+.++|..++.+
T Consensus 114 ~~gsKe~lvalLEfAEekl~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEpvrp~HP~~pp~~~~ffM~Y~~er 185 (191)
T KOG4387|consen 114 DVGSKEGLVALLEFAEEKLHVDKVFICFDKNREDRAALLRTFSYVGFEPVRPDHPVVPPRPDVFFMVYPLER 185 (191)
T ss_pred cccchHhHHHHHHHHHHhhccceEEEEEecCccChHhhhhhehcceeeecCCCCCCCCCccceEEEEEeecc
Confidence 345566667788888877 89999998776654 345566678999887553334445689999988754
No 108
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.096 Score=38.48 Aligned_cols=53 Identities=9% Similarity=0.043 Sum_probs=47.2
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
+.---|+.+.+++-++...+.+|.....+.|..++.+-++||.++||..++.-
T Consensus 827 ~a~D~~~~k~m~~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~ 879 (891)
T KOG3698|consen 827 DASDAHPMKKMIQVLLVTLAANGSRGAFLTVAIDDIERQKFYSELGLTDLGLS 879 (891)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCcceeEEechhHHHHHHHHHHhchHHHhHh
Confidence 44466899999999999999999999999999999999999999999877644
No 109
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=93.90 E-value=0.97 Score=28.44 Aligned_cols=110 Identities=14% Similarity=0.129 Sum_probs=56.5
Q ss_pred hHHHHHHHhhhh-CCCcHHHHHHHHHHhhcCCceEEEEEE-CCeEEEEEEEEe-C----C--CceeeEEee----ccccc
Q 047740 20 VVDEIVKMEKKI-FPKHESLARSFDEDLKKKNSGLLYIQI-HGQVVGYVMYAW-P----T--SLSASITKL----NYRGQ 86 (154)
Q Consensus 20 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ivG~~~~~~-~----~--~~~~~i~~~----~~rg~ 86 (154)
.++++..+.... +.-...-...|...+...-...+++.. ..++|+.+.... . . .....++.. +|||+
T Consensus 14 ~~d~fmk~~g~~r~~Fk~~Di~~wk~sf~~~Y~l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~ 93 (181)
T PF06852_consen 14 YFDQFMKLHGNERWNFKRNDIKLWKESFDDDYWLVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGK 93 (181)
T ss_pred HHHHHHHHhcCCcccccHHHHHHHHHhhccCeEEEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCc
Confidence 466666665332 111111123444444432333333333 567888887752 1 1 123333333 99999
Q ss_pred cHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHH-HcCCeEeeE
Q 047740 87 GRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYK-KFGFQVDTL 133 (154)
Q Consensus 87 Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~-~~Gf~~~~~ 133 (154)
|+++-+-+.+.+.....+-+ ..+. .+..+.++|. -+||...+.
T Consensus 94 ~~~kl~~~~~~~~~~~~~~N-~~~~---~~~~~~~~w~k~~G~~~~~h 137 (181)
T PF06852_consen 94 GIMKLQDDICMDELDSVDDN-SVAQ---GNVKMSNFWHKMFGFDDYGH 137 (181)
T ss_pred chHHHHHHHHHHHhccCCCc-eeee---cCHHHHHHHHHHhCCCCCcc
Confidence 99964444444444333333 3333 3456677776 489888776
No 110
>PTZ00064 histone acetyltransferase; Provisional
Probab=93.37 E-value=0.32 Score=35.22 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=33.3
Q ss_pred CCeEEEEEEEEeCCCc---eeeEEee-ccccccHHHHHHHHHHHHHHHcC
Q 047740 59 HGQVVGYVMYAWPTSL---SASITKL-NYRGQGRGEALLEAAIKKCRTRT 104 (154)
Q Consensus 59 ~~~ivG~~~~~~~~~~---~~~i~~~-~~rg~Gig~~ll~~~~~~~~~~g 104 (154)
+-.+|||.+=...+.. .+.|-.+ .||++|+|+-|++..-+..+..|
T Consensus 368 G~HiVGYFSKEK~S~~~nNLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 368 GCHIVGYFSKEKVSLLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred CcEEEEEecccccCcccCceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 3588999876543333 3444444 99999999999999988877654
No 111
>PLN03239 histone acetyltransferase; Provisional
Probab=93.35 E-value=0.42 Score=33.09 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=32.9
Q ss_pred CCeEEEEEEEEeCCCc---eeeEEee-ccccccHHHHHHHHHHHHHHHcC
Q 047740 59 HGQVVGYVMYAWPTSL---SASITKL-NYRGQGRGEALLEAAIKKCRTRT 104 (154)
Q Consensus 59 ~~~ivG~~~~~~~~~~---~~~i~~~-~~rg~Gig~~ll~~~~~~~~~~g 104 (154)
+-.+|||.+=...+.. .+.|-.+ .||++|+|+-|++..-+..+..|
T Consensus 197 g~h~vGYFSKEK~s~~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 197 GFHPVGYYSKEKYSDVGYNLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred ceEEEEEeeecccCCCCCceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 3578898876543333 3344444 99999999999999888877654
No 112
>PHA02769 hypothetical protein; Provisional
Probab=93.08 E-value=0.13 Score=29.32 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHH---HHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 87 GRGEALLEAAIKKC---RTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 87 Gig~~ll~~~~~~~---~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
.-|..|++.+...+ ++.|...++..-.|++ |..+|+|.||+.+|.-
T Consensus 92 apgd~lvnfl~~l~~k~~~dg~evlwtlgfpdh--snaly~kagfk~vg~t 140 (154)
T PHA02769 92 APGDHLVNFLNDLAEKLKKDGFEVLWTLGFPDH--SNALYKKAGFKLVGQT 140 (154)
T ss_pred CChHHHHHHHHHHHHHHhcCCeEEEEEecCCCc--chhHHhhhhhhHhccc
Confidence 34555666655544 4458876666666664 7789999999998854
No 113
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=92.18 E-value=0.3 Score=34.99 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=32.9
Q ss_pred CCeEEEEEEEEeCCCc---eeeEEee-ccccccHHHHHHHHHHHHHHHcC
Q 047740 59 HGQVVGYVMYAWPTSL---SASITKL-NYRGQGRGEALLEAAIKKCRTRT 104 (154)
Q Consensus 59 ~~~ivG~~~~~~~~~~---~~~i~~~-~~rg~Gig~~ll~~~~~~~~~~g 104 (154)
+-.+|||.+=...+.. ...|-.+ .||++|+|+-|++..-+..+..|
T Consensus 290 g~h~vGyFSKEk~s~~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 290 GCHMVGYFSKEKHSEEDYNLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred CcEEEEEecccccCcCCCceEEEEecchhhhcchhheehhheehhhhccC
Confidence 4589999876543333 3444444 99999999999998877776554
No 114
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=91.10 E-value=2.6 Score=26.54 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=44.1
Q ss_pred eeEEeeccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEee
Q 047740 76 ASITKLNYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 76 ~~i~~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
.+++.+.-.+.|.++.|+..+.......|++-+..+ .....++++.|+|..+..
T Consensus 88 vEvGnLAs~~~g~~~~l~~~l~~~L~~~g~~w~vfT---aT~~lr~~~~rlgl~~~~ 141 (179)
T PF12261_consen 88 VEVGNLASFSPGAARLLFAALAQLLAQQGFEWVVFT---ATRQLRNLFRRLGLPPTV 141 (179)
T ss_pred eEeechhhcCcccHHHHHHHHHHHHHHCCCCEEEEe---CCHHHHHHHHHcCCCcee
Confidence 445555666899999999999999999999877666 456789999999998764
No 115
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.02 E-value=3 Score=27.58 Aligned_cols=57 Identities=11% Similarity=-0.014 Sum_probs=46.5
Q ss_pred CCeEEEEEEEEeCCCceeeEEee---ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccC
Q 047740 59 HGQVVGYVMYAWPTSLSASITKL---NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPL 115 (154)
Q Consensus 59 ~~~ivG~~~~~~~~~~~~~i~~~---~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~ 115 (154)
.|++|+.+....-.+....+..+ ++..+++|+-.+-.=+.+|++.|...+++.-.-+
T Consensus 159 ~G~LvAVavtDvL~dGlSsVY~FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYLGYwI~ 218 (253)
T COG2935 159 EGKLVAVAVTDVLPDGLSSVYTFYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYLGYWIK 218 (253)
T ss_pred CCcEEEEEeeecccCcceeEEEEeCCChhhhcchHHHHHHHHHHHHHhCCCeEEEEEEEC
Confidence 79999998886555555555555 9999999999999999999999999999985544
No 116
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=89.78 E-value=2.1 Score=23.33 Aligned_cols=28 Identities=11% Similarity=-0.088 Sum_probs=23.7
Q ss_pred CcEEEEEEccCChhHHHHHHHcCCeEee
Q 047740 105 VLRKTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
+..++=.|...|...++|.+++|+....
T Consensus 56 Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 56 YPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred hhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 5567777899999999999999998654
No 117
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=89.06 E-value=6.1 Score=27.74 Aligned_cols=123 Identities=10% Similarity=0.065 Sum_probs=72.2
Q ss_pred cccccccCCCchhhHHHHHHHhhhh---CCCc-HHHHHHHHHHhhcCCc--eEEEEEE-CCeEEEEEEEEeCC-------
Q 047740 7 VTELQRNSTNWTFVVDEIVKMEKKI---FPKH-ESLARSFDEDLKKKNS--GLLYIQI-HGQVVGYVMYAWPT------- 72 (154)
Q Consensus 7 ir~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~--~~~~~~~-~~~ivG~~~~~~~~------- 72 (154)
+|++.+. |++++..+.... |.-. ....+.+..++..... ..+++.. +|+|-+|+++..-+
T Consensus 263 ~R~me~k------Dvp~V~~Ll~~yl~qf~la~~f~~eev~Hwf~p~e~VV~syVvesp~g~ITDF~SFy~lpsTv~~~~ 336 (421)
T KOG2779|consen 263 LREMEEK------DVPAVFRLLRNYLKQFELAPVFDEEEVEHWFLPRENVVYSYVVESPNGKITDFCSFYSLPSTVMGNP 336 (421)
T ss_pred ccccccc------chHHHHHHHHHHHHheecccccCHHHhHhhcccccceEEEEEEECCCCcccceeeEEeccccccCCC
Confidence 4555555 677777664432 3211 1123455555443322 2334443 78999999886321
Q ss_pred -CceeeEEeeccccccH--HHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeecc
Q 047740 73 -SLSASITKLNYRGQGR--GEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYY 138 (154)
Q Consensus 73 -~~~~~i~~~~~rg~Gi--g~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~ 138 (154)
......+.+-|+...- -.+|+..++-.++..|++...+...-+| ..|.++++|-+-.-...||
T Consensus 337 ~~ktl~aaYlyY~v~~~t~~~~lvnDalilak~~gfDVFNAld~meN---~~fl~~LkFg~GdG~l~YY 402 (421)
T KOG2779|consen 337 KYKTLQAAYLYYNVATSTPLLQLVNDALILAKQKGFDVFNALDLMEN---ESFLKDLKFGPGDGNLQYY 402 (421)
T ss_pred CcceeeeeeEEEeccCCccHHHHHHHHHHHHHhcCCceeehhhhhhh---hhHHHhcCcCcCCCceeEE
Confidence 2234444444554444 5678888888899889887766655555 4599999998865444443
No 118
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=88.89 E-value=2.8 Score=28.42 Aligned_cols=59 Identities=22% Similarity=0.370 Sum_probs=35.3
Q ss_pred cccccccccCCCchhhHHHHHHHhhhh------CCCcHH--------HHHHHHHHhhcCC-ceEEEEEE--CCeEEEEEE
Q 047740 5 GTVTELQRNSTNWTFVVDEIVKMEKKI------FPKHES--------LARSFDEDLKKKN-SGLLYIQI--HGQVVGYVM 67 (154)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~--~~~ivG~~~ 67 (154)
+.+||++.. |++++.++.... .|.++. .+..|........ ..+++.++ .|++||++.
T Consensus 2 lvvRP~~~a------Dl~al~~LA~~sg~G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~sa 75 (336)
T COG3138 2 LVVRPVERA------DLEALMELAVKTGVGLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISA 75 (336)
T ss_pred ccccccccc------CHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEE
Confidence 568999999 799999886554 232222 1223333222223 34455555 699999987
Q ss_pred EE
Q 047740 68 YA 69 (154)
Q Consensus 68 ~~ 69 (154)
+.
T Consensus 76 I~ 77 (336)
T COG3138 76 IE 77 (336)
T ss_pred EE
Confidence 65
No 119
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=88.50 E-value=7.1 Score=27.75 Aligned_cols=124 Identities=10% Similarity=-0.027 Sum_probs=70.0
Q ss_pred cccccccccCCCchhhHHHHHHHhhhhCCCc----HHHHHHHHHHhhc--CCceEEEEEECCeEEEEEEEEeCCCceeeE
Q 047740 5 GTVTELQRNSTNWTFVVDEIVKMEKKIFPKH----ESLARSFDEDLKK--KNSGLLYIQIHGQVVGYVMYAWPTSLSASI 78 (154)
Q Consensus 5 ~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i 78 (154)
++++.++.++ -...+++.+..++..++... .-..+.+...... ++-.++++..+|++||+..+... ++..+-
T Consensus 200 i~~~~l~G~~-i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~~g~~Va~aL~l~~-~~~LyG 277 (370)
T PF04339_consen 200 IRIRTLTGDE-ITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARRDGQPVAFALCLRG-DDTLYG 277 (370)
T ss_pred CEEEEEeCCC-CCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEECCeEEEEEEEEEe-CCEEEE
Confidence 5555555432 12235677777766654322 1122333333332 23445666779999999887543 333322
Q ss_pred Eee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeec
Q 047740 79 TKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGY 137 (154)
Q Consensus 79 ~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~ 137 (154)
... ++.+.- -....-..+++|.++|++.+......+++ ...||.++.+....
T Consensus 278 RYwG~~~~~~~LH-Fe~cYYq~Ie~aI~~Gl~~f~~GaqGEHK------~~RGf~P~~t~S~H 333 (370)
T PF04339_consen 278 RYWGCDEEIPFLH-FELCYYQGIEYAIEHGLRRFEPGAQGEHK------IARGFEPVPTYSAH 333 (370)
T ss_pred eeecccccccCcc-hHHHHHHHHHHHHHcCCCEEECCcchhHH------HHcCCccccceeee
Confidence 222 333222 22345678999999999988777544332 25799998876443
No 120
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=87.64 E-value=4.4 Score=31.32 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=46.4
Q ss_pred ccccccHHHHHHHHHHHHHHHcC--CcE-------EEEEEcc--------------------------------------
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRT--VLR-------KTLHVDP-------------------------------------- 114 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g--~~~-------i~~~~~~-------------------------------------- 114 (154)
+|++-|+|++.++.+.++...+. +.. ..-.+.+
T Consensus 625 ~y~~MGYGsrAvqLL~~y~eG~~~~i~e~~~~~~~~~k~v~e~~~vsllee~i~pR~~lppLL~~L~er~perldylGvS 704 (1011)
T KOG2036|consen 625 EYQKMGYGSRAVQLLTDYFEGKFTSISEDVLAVDHSIKRVEEAEKVSLLEEQIKPRKDLPPLLLKLSERPPERLDYLGVS 704 (1011)
T ss_pred chhccCccHHHHHHHHHHHhccCCCccccccccCccccccchhhhhhhhhhhcccccCCCceeeEcccCCCcccceeeec
Confidence 99999999999999998875431 110 0000111
Q ss_pred --CChhHHHHHHHcCCeEeeEeeecc-cCCCceEEEEeecC
Q 047740 115 --LRTPAVNLYKKFGFQVDTLIQGYY-SADRPAYRMYIDFD 152 (154)
Q Consensus 115 --~n~~a~~~y~~~Gf~~~~~~~~~~-~~~~~~~~m~~~l~ 152 (154)
--+.-.+||++.||.++...+.-- -.|+-.++|.+.|.
T Consensus 705 fGLT~~L~kFWk~~gF~PvylrQt~n~lTGEHtcimLk~L~ 745 (1011)
T KOG2036|consen 705 FGLTPSLLKFWKKNGFVPVYLRQTSNDLTGEHTCIMLKTLE 745 (1011)
T ss_pred ccCCHHHHHHHHhcCceeEEeeccccccccceeEEEEecCC
Confidence 023458999999999998654322 22455788888775
No 121
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=86.63 E-value=6.3 Score=25.12 Aligned_cols=123 Identities=9% Similarity=0.063 Sum_probs=71.1
Q ss_pred cccccccCCCchhhHHHHHHHhhhhCC----CcHHHHHHHHHHhhcCC--ceEEEEEE-CCeEEEEEEEEe-CC------
Q 047740 7 VTELQRNSTNWTFVVDEIVKMEKKIFP----KHESLARSFDEDLKKKN--SGLLYIQI-HGQVVGYVMYAW-PT------ 72 (154)
Q Consensus 7 ir~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~ivG~~~~~~-~~------ 72 (154)
+|++++. |++++..+...... .+....+.+..++.... -..+|..+ +|+|-.++++.. ++
T Consensus 31 lR~m~~~------Dv~~v~~Ll~~yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~ 104 (190)
T PF02799_consen 31 LRPMEEK------DVPQVTKLLNKYLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNP 104 (190)
T ss_dssp EEE--GG------GHHHHHHHHHHHHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEESSSS
T ss_pred cccCchh------hHHHHHHHHHHHHHhcccccccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceeecCCC
Confidence 7888888 78888887655432 12223455555554433 23455555 458888888752 11
Q ss_pred -CceeeEEee--ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeecc
Q 047740 73 -SLSASITKL--NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGYY 138 (154)
Q Consensus 73 -~~~~~i~~~--~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~~ 138 (154)
......+.. ..-..-=-.+|++.++-.|++.|++...+-..-+|. .|.+.++|.+-.-...||
T Consensus 105 k~~~l~aAY~fY~~~~~~~l~~Lm~DaLi~Ak~~gfDVFNaLd~mdN~---~fL~~lKFg~GdG~L~YY 170 (190)
T PF02799_consen 105 KHKTLKAAYSFYYVATSTRLKELMNDALILAKNEGFDVFNALDLMDNS---SFLEDLKFGPGDGNLNYY 170 (190)
T ss_dssp SSSEEEEEEEEEEEESSSHHHHHHHHHHHHHHHTTESEEEEESTTTGG---GTTTTTT-EEEEEEEEEE
T ss_pred CccceeeeeeeeeeecCCCHHHHHHHHHHHHHHcCCCEEehhhhccch---hhHhhCCccCCCCCeEEE
Confidence 122333333 111112356788999999999999988777666774 589999999754333443
No 122
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=86.50 E-value=1.5 Score=31.03 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=27.4
Q ss_pred EEEEEEEEeCCCceeeEEee----ccccccHHHHHHHHHHHHHHHc
Q 047740 62 VVGYVMYAWPTSLSASITKL----NYRGQGRGEALLEAAIKKCRTR 103 (154)
Q Consensus 62 ivG~~~~~~~~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~ 103 (154)
.|||.+=...+.....++.+ .||++|+|+-|++.--+..+..
T Consensus 247 ~VGYFSKEK~s~~~yNlaCILtLPpyQRkGYGklLIdFSYeLSr~E 292 (396)
T KOG2747|consen 247 CVGYFSKEKESSENYNLACILTLPPYQRKGYGKLLIDFSYELSRRE 292 (396)
T ss_pred eeeeeccccccccccceeeeeecChhhhcccchhhhhhhhhhhccc
Confidence 46665543333333444444 9999999999999887766543
No 123
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=86.20 E-value=2.8 Score=27.00 Aligned_cols=48 Identities=15% Similarity=0.141 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHHHHc--CCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 87 GRGEALLEAAIKKCRTR--TVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 87 Gig~~ll~~~~~~~~~~--g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
|+|..++..+++..... ....+.+.........+++..++||....+.
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEE
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeE
Confidence 88999999999888764 5667888777766678889999999998864
No 124
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=86.02 E-value=4.7 Score=23.09 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHc-CCcEEEEEEccCChhH---HHHHHHcCCeEeeEeeecccC---CCceEEEEeec
Q 047740 89 GEALLEAAIKKCRTR-TVLRKTLHVDPLRTPA---VNLYKKFGFQVDTLIQGYYSA---DRPAYRMYIDF 151 (154)
Q Consensus 89 g~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~a---~~~y~~~Gf~~~~~~~~~~~~---~~~~~~m~~~l 151 (154)
-++-+-++++.|.+. ++..+.+.+..+.... ++-+.=.||+.+.-...-... ..++++|...+
T Consensus 39 ~K~~lvaLLElAee~L~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~~~~~~~~~~~~s~~~lfm~~el 108 (108)
T PF02100_consen 39 SKESLVALLELAEEKLGCSHVVICLDKNRPDRASLLRTLMWVGFELVTPGHPSVPPDITSPDWLFMGYEL 108 (108)
T ss_dssp -SHHHHHHHHHHHHHH----EEEEE---SS-HHHHHHHHTTT--EEE----SS-SS----S--EEEEE--
T ss_pred cHHHHHHHHHHhcCcCCCCEEEEEEECCchhHHHhhhhcEeeccEecCCCCCCCCCcCCCCCEEEEEEEC
Confidence 456667788888765 9999999988766553 344445788887633211112 33677776543
No 125
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=85.79 E-value=10 Score=26.74 Aligned_cols=108 Identities=9% Similarity=0.096 Sum_probs=60.8
Q ss_pred chhhHHHHHHHhhhhCCCcHH------HHHHHHHHhhcCC----ceEEEEE--ECCeEEEEEEEEeCC----C---ceee
Q 047740 17 WTFVVDEIVKMEKKIFPKHES------LARSFDEDLKKKN----SGLLYIQ--IHGQVVGYVMYAWPT----S---LSAS 77 (154)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~--~~~~ivG~~~~~~~~----~---~~~~ 77 (154)
...+++++..+..+.+-.+.. ....+..+...++ ..++.+. .++++|||++..+.. + ...+
T Consensus 90 ~~~~l~el~~lL~enyVEd~~~m~rf~Ys~eFl~Wal~~pg~~~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~ve 169 (421)
T KOG2779|consen 90 DFKDLEELYNLLNENYVEDDDSMFRFDYSPEFLKWALQPPGWKKEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVE 169 (421)
T ss_pred cHhHHHHHHhhcccCCCCccccchhhhccHHHHHhhhcCCCCccceEEEEEEecCCceEEEEeccccEEEEccceeeeee
Confidence 334566666666655533221 2345555554432 2233333 367999999875321 1 2344
Q ss_pred EEee----ccccccHHHHHHHHHHHHHHHcCCcEEE---EEEccCChhHHHHHH
Q 047740 78 ITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKT---LHVDPLRTPAVNLYK 124 (154)
Q Consensus 78 i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~---~~~~~~n~~a~~~y~ 124 (154)
|..+ +.|+++++--|++++-..+.-.|+=... -.+.+.+.+..+.|.
T Consensus 170 INFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvLp~PVstcRY~H 223 (421)
T KOG2779|consen 170 INFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVLPKPVSTCRYWH 223 (421)
T ss_pred EEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceeeccccchhhhhh
Confidence 4444 9999999999999998887665432111 124455555555554
No 126
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=85.43 E-value=7.8 Score=31.77 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=43.3
Q ss_pred CCeEEEEEEEEeCCCceeeEEeecc---ccccHHHHHHHHHHHHHHHcCCcEEEEEEcc
Q 047740 59 HGQVVGYVMYAWPTSLSASITKLNY---RGQGRGEALLEAAIKKCRTRTVLRKTLHVDP 114 (154)
Q Consensus 59 ~~~ivG~~~~~~~~~~~~~i~~~~~---rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 114 (154)
+|+++|++.+.+...+...+..+-+ -=+|+...|+..++.++++.|+..+.+...|
T Consensus 429 ~G~i~af~s~~p~~~~g~slDLMRr~pdapnGvmE~L~~~l~~~~k~~G~~~~sLg~AP 487 (1094)
T PRK02983 429 DGQVVALLSFVPWGRRGLSLDLMRRSPDAPNGVIELMVAELALEAESLGITRISLNFAV 487 (1094)
T ss_pred CCeEEEEEEEeeeCCCCEEEEecccCCCCCCCHHHHHHHHHHHHHHHcCCCEEEechhh
Confidence 6899999999764433334444321 2589999999999999999999999998655
No 127
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=84.75 E-value=9.5 Score=28.55 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=44.1
Q ss_pred EEECCeEEEEEEEEeCCC-ceeeEEee---ccccccHHHHHHHHHHHHHHHcCCcEEEEEEcc
Q 047740 56 IQIHGQVVGYVMYAWPTS-LSASITKL---NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDP 114 (154)
Q Consensus 56 ~~~~~~ivG~~~~~~~~~-~~~~i~~~---~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 114 (154)
...+|+|||++.+.+... ....+..+ .---+|+-..|...++.+++++|+.++.+...|
T Consensus 398 ~~~~g~VvaFa~l~~~~~~~~~SlDlMR~sp~ap~g~mdfLf~~li~~aKe~G~~~fsLgmAp 460 (538)
T COG2898 398 VDNEGEVVAFANLMPTGGKEGYSLDLMRRSPDAPNGTMDFLFSELILWAKEEGYQRFSLGMAP 460 (538)
T ss_pred EcCCCCeEEEEeecccCCcceeEEEeeecCCCCCchHHHHHHHHHHHHHHHcCCeEEecCCcc
Confidence 334788999999965443 33444444 333578999999999999999999999987554
No 128
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=83.32 E-value=2 Score=24.54 Aligned_cols=25 Identities=16% Similarity=0.413 Sum_probs=18.1
Q ss_pred EEEEEEccCChhHHHHHHHcCCeEee
Q 047740 107 RKTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 107 ~i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
.+.+.|. +=.+|+.||+++||+...
T Consensus 3 ~i~l~V~-D~~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 3 AVGIVVA-DMAKSLDFYRRLGFDFPE 27 (122)
T ss_pred eEEEEec-cHHHHHHHHHHhCceecC
Confidence 4555554 336899999999998753
No 129
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=82.25 E-value=1.8 Score=25.52 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=21.4
Q ss_pred CCcEEEEEEccCChhHHHHHHHcCCeEeeE
Q 047740 104 TVLRKTLHVDPLRTPAVNLYKKFGFQVDTL 133 (154)
Q Consensus 104 g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~ 133 (154)
++..+.+.|.. -.+|++||.++||+....
T Consensus 3 ~i~Hi~i~v~D-l~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 3 RMDNVGIVVRD-LEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeeEEEEeCC-HHHHHHHHHHcCCEEccc
Confidence 34567777663 468999999999987654
No 130
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=82.24 E-value=0.94 Score=31.36 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=28.0
Q ss_pred eEEEEEEEEeCCCceeeEEee----ccccccHHHHHHHHHHHHHH
Q 047740 61 QVVGYVMYAWPTSLSASITKL----NYRGQGRGEALLEAAIKKCR 101 (154)
Q Consensus 61 ~ivG~~~~~~~~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~ 101 (154)
.+|||.+=...+.....++.+ .||++|+|.-|++..-...+
T Consensus 248 h~vGyFSKEK~S~~~yNLaCILtLP~yQRrGYG~lLIdFSY~Ls~ 292 (395)
T COG5027 248 HLVGYFSKEKESEQDYNLACILTLPPYQRRGYGKLLIDFSYLLSQ 292 (395)
T ss_pred eeeeeechhhcccccCceEEEEecChhHhcccceEeeeeeeeccc
Confidence 478887765444444555555 99999999988876544333
No 131
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=81.74 E-value=7.4 Score=27.48 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=24.7
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCC
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLR 116 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n 116 (154)
.||++|+|+.|++.+....... .+.+.++|...+
T Consensus 228 Pfq~~Glgs~l~E~i~r~~~~~-p~v~DiTVEdPs 261 (403)
T KOG2696|consen 228 PFQGKGLGSQLYEAIARDYLEE-PTVLDITVEDPS 261 (403)
T ss_pred cccCCchHHHHHHHHHHhhccC-CceeEEEecCch
Confidence 9999999999999998665543 334556655433
No 132
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=77.29 E-value=11 Score=23.74 Aligned_cols=131 Identities=9% Similarity=-0.020 Sum_probs=74.3
Q ss_pred hhHHHHHHHhhhhCCCcHHH-HH---HHHHHhhcCCceEEEEEECCeEEEEEEEEe----CCCc---eeeEEee----cc
Q 047740 19 FVVDEIVKMEKKIFPKHESL-AR---SFDEDLKKKNSGLLYIQIHGQVVGYVMYAW----PTSL---SASITKL----NY 83 (154)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~----~~~~---~~~i~~~----~~ 83 (154)
.|-.++.++..+.|...-.+ .+ .-..+....+....++++..-+++.+.+.. -... .++++.. +.
T Consensus 18 ~dH~eLa~ffrktYgptg~fnakpFeg~RSWAGARPElRaIgyD~~GvaAH~G~LRRFIkVG~vDlLVaElGLygVRpDL 97 (196)
T PF02474_consen 18 ADHVELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPELRAIGYDSRGVAAHMGLLRRFIKVGEVDLLVAELGLYGVRPDL 97 (196)
T ss_pred hhhHHHHHHHHHhcCCCCcccCccCCcccccccCCceeEEEeecCchHHHHHHHHHHHhccCCcceeEEEEEEEEeeccc
Confidence 35566777766666543211 11 112222233455566676665655544321 1111 2333333 99
Q ss_pred ccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcC---C-------eEeeEeeecccCC-----CceEEEE
Q 047740 84 RGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFG---F-------QVDTLIQGYYSAD-----RPAYRMY 148 (154)
Q Consensus 84 rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~G---f-------~~~~~~~~~~~~~-----~~~~~m~ 148 (154)
.|.||+..+ ..+.-..++.|+...+.+|.+ +.++.+++++ . ..-.+.++.+.+- +|..++.
T Consensus 98 EGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~---al~~Hv~R~~R~gl~ti~~gvrVRSTlpdv~~dlppTr~ed~lv~V 173 (196)
T PF02474_consen 98 EGLGISHSM-RVMYPVLQELGVPFGFGTVRH---ALRNHVERLCRNGLATILSGVRVRSTLPDVYLDLPPTRIEDVLVVV 173 (196)
T ss_pred cccccchhh-hhhhhHHHhcCCCeecccchH---HHHHHHHHHhccchhhcccCceeeccCccccCCCCCcccccceEEE
Confidence 999999976 688888888899988888874 5667777665 3 2223333433321 3778887
Q ss_pred eecCC
Q 047740 149 IDFDS 153 (154)
Q Consensus 149 ~~l~~ 153 (154)
.++.+
T Consensus 174 ~Pi~r 178 (196)
T PF02474_consen 174 LPIGR 178 (196)
T ss_pred EcCCC
Confidence 77653
No 133
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=74.91 E-value=6.6 Score=23.26 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=35.0
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEee
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
+=||-|+|+++++.+.+...+ .+.+.....|.-|-.-..|.|-..-.
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~----~~eI~AlGTNa~AT~~MlKaGA~~gA 52 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPE----EVEIIALGTNAIATSAMLKAGANEGA 52 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCC----CcEEEEEehhHHHHHHHHHcCCCCcc
Confidence 668999999999998776554 35555555788888888888876543
No 134
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=73.57 E-value=4.4 Score=23.21 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=17.2
Q ss_pred EEEEEccCChhHHHHHHHcCCeEee
Q 047740 108 KTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 108 i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
+.+.|. +=.+|+.||+.+||+...
T Consensus 4 v~l~V~-Dl~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 4 INLPVK-DLEKSTAFYTALGFEFNP 27 (124)
T ss_pred EEeecC-CHHHHHHHHHHCCCEEcc
Confidence 334443 346899999999999764
No 135
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=73.55 E-value=3.4 Score=23.45 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=15.7
Q ss_pred ChhHHHHHHHcCCeEeeEe
Q 047740 116 RTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 116 n~~a~~~y~~~Gf~~~~~~ 134 (154)
=.+|++||+.+||+.....
T Consensus 12 l~~s~~FY~~LGf~~~~~~ 30 (113)
T cd08356 12 FAESKQFYQALGFELEWEN 30 (113)
T ss_pred HHHHHHHHHHhCCeeEecC
Confidence 3579999999999987654
No 136
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=72.72 E-value=9.2 Score=22.46 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=20.8
Q ss_pred cEEEEEEccCChhHHHHHHH-cCCeEeeEe
Q 047740 106 LRKTLHVDPLRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 106 ~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
+.+.+.|. +=.++++||++ +||+.....
T Consensus 2 ~Hi~i~V~-D~e~s~~FY~~vLGf~~~~~~ 30 (136)
T cd08342 2 DHVEFYVG-NAKQLASWFSTKLGFEPVAYH 30 (136)
T ss_pred eEEEEEeC-CHHHHHHHHHHhcCCeEEEec
Confidence 35666664 44689999999 999987654
No 137
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=72.26 E-value=5.9 Score=22.31 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=19.4
Q ss_pred cEEEEEEccCChhHHHHHHHcCCeEeeE
Q 047740 106 LRKTLHVDPLRTPAVNLYKKFGFQVDTL 133 (154)
Q Consensus 106 ~~i~~~~~~~n~~a~~~y~~~Gf~~~~~ 133 (154)
..+.+.|.. =.+|.+||..+||+....
T Consensus 5 ~hv~l~v~D-l~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 5 AHVRFEHPD-LDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEEccCC-HHHHHHHHHHcCCEEEEe
Confidence 455565553 357999999999988654
No 138
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=71.71 E-value=10 Score=21.44 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=20.3
Q ss_pred CcEEEEEEccCChhHHHHHHH-cCCeEeeEe
Q 047740 105 VLRKTLHVDPLRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
+..+.+.|.. =..++.||++ +||+.....
T Consensus 2 i~hv~l~v~d-~~~a~~FY~~~lG~~~~~~~ 31 (126)
T cd08346 2 LHHVTLITRD-AQETVDFYTDVLGLRLVKKT 31 (126)
T ss_pred cccEEEEcCC-hhHhHHHHHHccCCEEeeeE
Confidence 4456666643 3579999986 899987654
No 139
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=71.65 E-value=7 Score=21.95 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=20.4
Q ss_pred CcEEEEEEccCChhHHHHHHHcCCeEeeE
Q 047740 105 VLRKTLHVDPLRTPAVNLYKKFGFQVDTL 133 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~ 133 (154)
+..+.+.|.. =.++.+||..+||+...+
T Consensus 3 i~hv~l~v~d-~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 3 IDHFALEVPD-LEVARRFYEAFGLDVREE 30 (112)
T ss_pred eeEEEEecCC-HHHHHHHHHHhCCcEEee
Confidence 4456666553 368999999999998654
No 140
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=71.53 E-value=27 Score=23.33 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=25.5
Q ss_pred ccccccHHHHHHHHHHHHHHHc-CCcEE-EEEEccCChhHHHHHHH
Q 047740 82 NYRGQGRGEALLEAAIKKCRTR-TVLRK-TLHVDPLRTPAVNLYKK 125 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~-g~~~i-~~~~~~~n~~a~~~y~~ 125 (154)
.-|++|+|+.|+..+...-... =+.+. .+.+.|.+ ...+|..+
T Consensus 194 ~~Rr~gIAs~lldva~~~~~~g~~isr~~iAfs~PTd-dGk~lAt~ 238 (257)
T KOG3014|consen 194 LRRRKGIASLLLDVARCNFVYGEVISREEIAFSDPTD-DGKKLATK 238 (257)
T ss_pred hhhhhhhHHHHHHHHHHhhhhhcccchhheEecCCCc-hhHHHHHH
Confidence 8899999999999886654432 11111 23455554 34445443
No 141
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=71.38 E-value=10 Score=22.42 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEEEEEccCChhHHHHHH-HcCCeEeeEe
Q 047740 107 RKTLHVDPLRTPAVNLYK-KFGFQVDTLI 134 (154)
Q Consensus 107 ~i~~~~~~~n~~a~~~y~-~~Gf~~~~~~ 134 (154)
.+.+.|. +-.+|++||+ .+||+...+.
T Consensus 5 Hv~irV~-DlerSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 5 HFVFKVG-NRNKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred EEEEEeC-CHHHHHHHHHHhcCCEEEeee
Confidence 4455554 3468999995 5999986643
No 142
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.18 E-value=15 Score=23.92 Aligned_cols=37 Identities=11% Similarity=0.245 Sum_probs=28.2
Q ss_pred HHHHHcCCcEEEEE---EccCChhHHHHHHHcCCeEeeEe
Q 047740 98 KKCRTRTVLRKTLH---VDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 98 ~~~~~~g~~~i~~~---~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
+-.+..|++++.+- +.+-|.+...|+++.||..+...
T Consensus 111 ~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~ 150 (238)
T COG3473 111 EALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFK 150 (238)
T ss_pred HHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEee
Confidence 33445577777765 45779999999999999998754
No 143
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=70.66 E-value=9.3 Score=21.55 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=23.0
Q ss_pred CcEEEEEEccCChhHHHHHHH-cCCeEeeEee
Q 047740 105 VLRKTLHVDPLRTPAVNLYKK-FGFQVDTLIQ 135 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~~ 135 (154)
+..+.+.|..- .+++.||++ +||+......
T Consensus 2 l~Hi~i~v~d~-~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 2 LDHIAIRVKDL-EKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEEESCH-HHHHHHHHHTTTSEEEEEEE
T ss_pred eEEEEEEcCCH-HHHHHHHHHHhCCcEEeeec
Confidence 45667766644 589999987 9999988765
No 144
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=69.98 E-value=15 Score=24.11 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHHHHc--CCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 87 GRGEALLEAAIKKCRTR--TVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 87 Gig~~ll~~~~~~~~~~--g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
|+|..++..+++...+. +..++.+.-...-..-+.+..+++|+...+.
T Consensus 93 GMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 93 GMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred CCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeee
Confidence 88999999999988876 6667777654443456788889999988753
No 145
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=69.90 E-value=19 Score=20.79 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEee
Q 047740 90 EALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 90 ~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
...+-.+++.+.+.|++.+++.....+..+....++.|....+
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEe
Confidence 3445566666777799999999888999999999999999886
No 146
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=69.88 E-value=17 Score=22.85 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeee
Q 047740 89 GEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQG 136 (154)
Q Consensus 89 g~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~ 136 (154)
|+-|+.++++.+++ .+..+.+-+.++.+....+..+.|++...+...
T Consensus 26 GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~gv~vi~tpG~ 72 (177)
T COG2266 26 GKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVGVKVIETPGE 72 (177)
T ss_pred CccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcCceEEEcCCC
Confidence 56778888887777 788999999999999999999999888776533
No 147
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=68.07 E-value=5.8 Score=22.60 Aligned_cols=21 Identities=19% Similarity=0.282 Sum_probs=16.5
Q ss_pred CChhHHHHHHHcCCeEeeEee
Q 047740 115 LRTPAVNLYKKFGFQVDTLIQ 135 (154)
Q Consensus 115 ~n~~a~~~y~~~Gf~~~~~~~ 135 (154)
+=.+|++||+++||+......
T Consensus 12 Dl~~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 12 DLDATEAFYARLGFSVGYRQA 32 (120)
T ss_pred CHHHHHHHHHHcCCEEEecCC
Confidence 335899999999999876544
No 148
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=67.77 E-value=15 Score=24.34 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=36.4
Q ss_pred cH-HHHHHHHHHHHHHHcCCcEEEEEE---ccCChhHHHHHHHcCCeEeeEe
Q 047740 87 GR-GEALLEAAIKKCRTRTVLRKTLHV---DPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 87 Gi-g~~ll~~~~~~~~~~g~~~i~~~~---~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
|+ ...-..++.+.++..|+++|.+-+ .+-|.....||++.||+.....
T Consensus 101 g~p~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~ 152 (239)
T TIGR02990 101 GTPVVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFT 152 (239)
T ss_pred CCCeeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeee
Confidence 44 455666777777888999998863 3446788999999999998753
No 149
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=67.49 E-value=21 Score=22.87 Aligned_cols=47 Identities=9% Similarity=0.142 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHHHHHHcCCcEEEEEEccCC--hhHHHHHHHcCCeEeeE
Q 047740 87 GRGEALLEAAIKKCRTRTVLRKTLHVDPLR--TPAVNLYKKFGFQVDTL 133 (154)
Q Consensus 87 Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n--~~a~~~y~~~Gf~~~~~ 133 (154)
-.--++++.+++..++.|...+.+...+.. ......++..||.....
T Consensus 19 ~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 19 TTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred cCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 344589999999999999887777765554 36888999999987643
No 150
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=66.01 E-value=28 Score=21.21 Aligned_cols=117 Identities=16% Similarity=0.251 Sum_probs=63.3
Q ss_pred ccccccccCCCchhhHHHHHHHhhhh----------CCCcH-----HHHHHHHHHhhcCCceEEEEE-ECCeEEEEEEEE
Q 047740 6 TVTELQRNSTNWTFVVDEIVKMEKKI----------FPKHE-----SLARSFDEDLKKKNSGLLYIQ-IHGQVVGYVMYA 69 (154)
Q Consensus 6 ~ir~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~ivG~~~~~ 69 (154)
.+|++++. |++.+..++... +|..+ .....-...+. ...+.+++. +++.+.||+..-
T Consensus 2 ~yR~f~e~------D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alrfy~-RsgHSFvA~~e~~~~~GfvLAQ 74 (161)
T PF09390_consen 2 RYRPFTEP------DFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALRFYE-RSGHSFVAEDEGGELQGFVLAQ 74 (161)
T ss_dssp EEE---GG------GHHHHHHC--------------------STTS---HHHHHHHH-CCS--EEEE-ETTEEEEEEEEE
T ss_pred cccccCcc------cHHHHHHHhhhccccccccccccccccccccccCCHHHhhhhh-ccCCcEEEEccCCceeeeeehh
Confidence 56788887 788888774322 11110 01111122233 244567777 799999998653
Q ss_pred --eCCC-ceeeEEee---ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEee
Q 047740 70 --WPTS-LSASITKL---NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 70 --~~~~-~~~~i~~~---~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
|..+ ....+..+ +-+......-|+.++.+-|-+.++..+.+.+.+ ....-...-||...+
T Consensus 75 aVWQGdrptVlV~ri~~~~~~~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p---~l~~A~~a~~~~~~~ 140 (161)
T PF09390_consen 75 AVWQGDRPTVLVRRILLAPGEPEEVYEGLLRAVVKSAYDAGVYEVHLHLDP---ELEAAARAEGFRLGG 140 (161)
T ss_dssp EEE-SSSEEEEEEEE---EESSHHHHHHHHHHHHHHHHHTT-SEEEE---T---HHHHHHHHTT----S
T ss_pred HHhcCCCceEEEEEeecCCCCcHHHHHHHHHHHHHhhhccceEEEEeeCCH---HHHHHHhhcccccCC
Confidence 4433 33444444 666678889999999999999999999888876 455566778887665
No 151
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=64.55 E-value=11 Score=21.29 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=21.5
Q ss_pred CCcEEEEEEccCChhHHHHHHH-cCCeEeeEe
Q 047740 104 TVLRKTLHVDPLRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 104 g~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
++..+.+.+.. =.++++||++ +||+.....
T Consensus 3 ~i~hv~l~v~d-~~~s~~FY~~~lG~~~~~~~ 33 (120)
T cd08362 3 ALRGVGLGVPD-LAAAAAFYREVWGLSVVAED 33 (120)
T ss_pred eeeEEEEecCC-HHHHHHHHHhCcCcEEEEec
Confidence 34566666653 3689999997 999987554
No 152
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=64.13 E-value=4.3 Score=24.42 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=23.0
Q ss_pred CCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 104 TVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 104 g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
|+..|+..+... .++..+++++||+.+++.
T Consensus 9 G~dFvEFa~~~~-~~l~~~~~~lGF~~~a~h 38 (139)
T PF14696_consen 9 GFDFVEFAVPDA-QALAQLFTALGFQPVARH 38 (139)
T ss_dssp EEEEEEEE-SST-TSCHHHHCCCCEEEECCE
T ss_pred CeEEEEEecCCH-HHHHHHHHHhCcceEEec
Confidence 667788777664 567788999999999865
No 153
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=64.05 E-value=3.3 Score=22.17 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHc
Q 047740 91 ALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKF 126 (154)
Q Consensus 91 ~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~ 126 (154)
+|++.+.+.-+...=-.++|.++|.+..|+..|...
T Consensus 3 ~LL~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~ 38 (78)
T PF12652_consen 3 ELLREIQEVSFAVVDLNLYLDTHPDDQEALEYYNEY 38 (78)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 455555554444322257899999999999888754
No 154
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=63.77 E-value=17 Score=21.62 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=26.3
Q ss_pred ccccccHHHHHHHHHHHHHHHc-CCcEEEEEEccC
Q 047740 82 NYRGQGRGEALLEAAIKKCRTR-TVLRKTLHVDPL 115 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~ 115 (154)
.|+|+|+..+.++..-..+... .-+.+.+-..++
T Consensus 15 ~y~GkGYS~~FveN~d~I~~rL~~ge~i~lV~g~D 49 (135)
T COG3543 15 GYQGKGYSPAFVENYDAIAERLKAGEDIKLVDGPD 49 (135)
T ss_pred ecccccCCHHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence 8999999999999998888876 334466655544
No 155
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=62.46 E-value=12 Score=22.83 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=20.8
Q ss_pred CCcEEEEEEccCChhHHHHHHH-cCCeEee
Q 047740 104 TVLRKTLHVDPLRTPAVNLYKK-FGFQVDT 132 (154)
Q Consensus 104 g~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~ 132 (154)
++..+.+.|..- .+|+.||++ +||+...
T Consensus 4 ~i~Hv~i~V~Dl-e~s~~FY~~~LG~~~~~ 32 (162)
T TIGR03645 4 TFSHIGISVPDL-DAAVKFYTEVLGWYLIM 32 (162)
T ss_pred eEEEEEEEeCCH-HHHHHHHHHhcCCEEEe
Confidence 456777777643 689999977 8998753
No 156
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=62.25 E-value=5.6 Score=23.44 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=14.7
Q ss_pred hhHHHHHHHcCCeEeeEe
Q 047740 117 TPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 117 ~~a~~~y~~~Gf~~~~~~ 134 (154)
.++.+||+++||+.-...
T Consensus 15 ~~S~~Fy~alGfk~Npq~ 32 (133)
T COG3607 15 EASKAFYTALGFKFNPQF 32 (133)
T ss_pred HHHHHHHHHhCcccCCCc
Confidence 578999999999976543
No 157
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=62.23 E-value=15 Score=20.91 Aligned_cols=29 Identities=17% Similarity=0.104 Sum_probs=20.5
Q ss_pred CcEEEEEEccCChhHHHHHHH-cCCeEeeEe
Q 047740 105 VLRKTLHVDPLRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
+..+.+.|.. =.+|.+||.+ +||+.....
T Consensus 5 l~hv~l~v~D-l~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 5 PGHVQLRVLD-LEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred EeEEEEEeCC-HHHHHHHHHhccCCEeeeec
Confidence 4456666653 3689999976 999986653
No 158
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=61.28 E-value=62 Score=23.67 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=53.6
Q ss_pred eEEEEEECCeEEEEEEEE-eCCCc---eeeEE--ee-ccccccHHHHHHHHHHHHHHHcCCcEEEEEE------------
Q 047740 52 GLLYIQIHGQVVGYVMYA-WPTSL---SASIT--KL-NYRGQGRGEALLEAAIKKCRTRTVLRKTLHV------------ 112 (154)
Q Consensus 52 ~~~~~~~~~~ivG~~~~~-~~~~~---~~~i~--~~-~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~------------ 112 (154)
..+.+..+++.|+.+.+. ..... ...+. .+ +|-++.+-..+++.+.+++++..+-.+.+.-
T Consensus 41 ~~~~v~~~~~~v~aa~ll~k~~~~~~~~~~~prGPv~dy~~~~l~~~~~k~l~~y~k~~~~l~i~idP~l~~~~~~~~~~ 120 (418)
T COG2348 41 HLIGVKKDGNAVIAASLLSKKLPLGFYTYYIPRGPVMDYSNQELLDYFIKELKKYAKSKRALFIKIDPYLVYQQFDLGGE 120 (418)
T ss_pred eeEEEEecCceeeeeeeeeeeccCCceEEEecCCCcccccchHHHHHHHHHHHHHHhhccceEEEeccchhhhcccCCCc
Confidence 345556666665554443 21111 12221 11 7888888888888888888876543333211
Q ss_pred ---ccCChhHHHHHHHcCCeEeeEeeeccc
Q 047740 113 ---DPLRTPAVNLYKKFGFQVDTLIQGYYS 139 (154)
Q Consensus 113 ---~~~n~~a~~~y~~~Gf~~~~~~~~~~~ 139 (154)
...|.+.++.+..+|++..+.-..+-.
T Consensus 121 ~~~~~~n~~~i~~l~~lG~k~~g~t~~~~~ 150 (418)
T COG2348 121 IIENYNNLAIIKLLKDLGYKHSGFTKGLDD 150 (418)
T ss_pred cccCcchHHHHHHHHHhhhhhcCcccccCc
Confidence 144688999999999998886555443
No 159
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=61.15 E-value=27 Score=19.46 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=14.2
Q ss_pred CceEEEEEECCe-EEEEEEEEeC
Q 047740 50 NSGLLYIQIHGQ-VVGYVMYAWP 71 (154)
Q Consensus 50 ~~~~~~~~~~~~-ivG~~~~~~~ 71 (154)
....+++.++++ +||++.+..+
T Consensus 29 ~~~h~lv~~~~~~~VGt~Rl~~~ 51 (101)
T PF13444_consen 29 HSVHLLVRDKNTEVVGTVRLILP 51 (101)
T ss_pred CccEEEEEECCCCEEEEEEeecc
Confidence 344455555555 9999998643
No 160
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=60.95 E-value=26 Score=21.87 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=26.8
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEee
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQ 135 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 135 (154)
++|--|+|.++++.+ |++++.+-+ +|+....-.+.+|-+.+++.+
T Consensus 124 d~R~ygigaqIL~dL-------GV~~~rLLt--nnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 124 DLRDYGIGAQILRDL-------GVKKMRLLT--NNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp ----THHHHHHHHHT-------T--SEEEE---S-HHHHHHHHHTT--EEEEE-
T ss_pred ccccHHHHHHHHHHc-------CCCEEEECC--CChhHHHHHhcCCCEEEEEec
Confidence 788888888887654 888887764 467788888999988888653
No 161
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=60.77 E-value=15 Score=20.68 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=22.0
Q ss_pred CCcEEEEEEccCChhHHHHHHH-cCCeEeeEe
Q 047740 104 TVLRKTLHVDPLRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 104 g~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
++..+.+.|. +=.++.+||++ +||+.....
T Consensus 3 ~l~hi~l~v~-d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 3 RIDHVVLTVA-DIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred ccceEEEEec-CHHHHHHHHHHHhCceeeccc
Confidence 3456777764 44689999998 899987654
No 162
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=60.70 E-value=21 Score=20.36 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=21.0
Q ss_pred CcEEEEEEccCChhHHHHHHHc----CCeEeeEe
Q 047740 105 VLRKTLHVDPLRTPAVNLYKKF----GFQVDTLI 134 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~~----Gf~~~~~~ 134 (154)
+..+.+.|. +=.++.+||++. ||+.....
T Consensus 2 i~Hv~i~v~-d~~~~~~Fy~~~l~~~G~~~~~~~ 34 (128)
T cd07242 2 IHHVELTVR-DLERSRAFYDWLLGLLGFEEVKEW 34 (128)
T ss_pred CceEEEEeC-CHHHHHHHHHHHHhhcCCEEEEee
Confidence 456777764 336789999885 99987653
No 163
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=60.34 E-value=20 Score=20.11 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=21.3
Q ss_pred CCcEEEEEEccCChhHHHHHH-HcCCeEeeE
Q 047740 104 TVLRKTLHVDPLRTPAVNLYK-KFGFQVDTL 133 (154)
Q Consensus 104 g~~~i~~~~~~~n~~a~~~y~-~~Gf~~~~~ 133 (154)
++..+.+.|. +=.+|.+||. .+||.....
T Consensus 3 ~~~hi~l~v~-d~~~a~~fy~~~lG~~~~~~ 32 (125)
T cd08352 3 GIHHVAIICS-DYEKSKEFYVEILGFKVIRE 32 (125)
T ss_pred ccceEEEEcC-CHHHHHHHHHHhcCCEEeee
Confidence 4567777775 3468899997 499998643
No 164
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=60.21 E-value=31 Score=19.85 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=36.8
Q ss_pred CCeEEEEEEEEeCC------CceeeEEee----cccc-ccHHHHHHHHHHHHHHHcCCcE-EEEEEccCChhHHHHH
Q 047740 59 HGQVVGYVMYAWPT------SLSASITKL----NYRG-QGRGEALLEAAIKKCRTRTVLR-KTLHVDPLRTPAVNLY 123 (154)
Q Consensus 59 ~~~ivG~~~~~~~~------~~~~~i~~~----~~rg-~Gig~~ll~~~~~~~~~~g~~~-i~~~~~~~n~~a~~~y 123 (154)
++..-|.+.+.+.. +...++..+ .-|| .|++..+.+++.+ +..+ +...+.++|+. .++|
T Consensus 17 ~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~-----~fp~~L~Wrsr~~n~~-n~Wy 87 (108)
T cd04266 17 AGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLD-----GFPNELIWRSRKDNPV-NKWY 87 (108)
T ss_pred eCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHH-----cCCCceEEEeCCCCcc-cceE
Confidence 45555555554432 344566666 7776 7999888887766 3344 77888877753 3454
No 165
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=59.43 E-value=14 Score=17.62 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=14.1
Q ss_pred hcCCceEEEEEECCeEEEEEEE
Q 047740 47 KKKNSGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 47 ~~~~~~~~~~~~~~~ivG~~~~ 68 (154)
........+.-++++++|.+..
T Consensus 27 ~~~~~~~~V~d~~~~~~G~is~ 48 (57)
T PF00571_consen 27 KNGISRLPVVDEDGKLVGIISR 48 (57)
T ss_dssp HHTSSEEEEESTTSBEEEEEEH
T ss_pred HcCCcEEEEEecCCEEEEEEEH
Confidence 3334444554468999999865
No 166
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=58.99 E-value=22 Score=21.18 Aligned_cols=29 Identities=7% Similarity=0.208 Sum_probs=21.1
Q ss_pred CcEEEEEEccCChhHHHHHHH-cCCeEeeEe
Q 047740 105 VLRKTLHVDPLRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
+..+.+.|..- .++.+||++ +||+...+.
T Consensus 7 l~Hv~l~v~Dl-e~s~~FY~~vLGf~~~~~~ 36 (143)
T cd07243 7 LDHCLLTGEDI-AETTRFFTDVLDFYLAERV 36 (143)
T ss_pred eCEEEEecCCH-HHHHHHHHHhcCCEEEEEE
Confidence 45677776643 679999977 999976654
No 167
>COG2994 HlyC ACP:hemolysin acyltransferase (hemolysin-activating protein) [Posttranslational modification, protein turnover, chaperones]
Probab=58.88 E-value=17 Score=21.95 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=15.0
Q ss_pred CceEEEEEECCeEEEEEEEE
Q 047740 50 NSGLLYIQIHGQVVGYVMYA 69 (154)
Q Consensus 50 ~~~~~~~~~~~~ivG~~~~~ 69 (154)
+++.++..++|++||||...
T Consensus 52 ~Qf~ly~de~g~Piaf~~WA 71 (148)
T COG2994 52 GQFALYFDEHGRPIAFCTWA 71 (148)
T ss_pred CceEEEEcCCCCeeEEEEEe
Confidence 45555555799999999876
No 168
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=58.29 E-value=37 Score=21.83 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=36.8
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeec
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGY 137 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~ 137 (154)
++|.-|+|.++++.+ |++++.+-++ |+.-+.-.+..|-+.+.+.+..
T Consensus 125 D~R~ygigAqIL~dL-------GI~~irLLtn--np~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 125 DERDYGIGAQILKDL-------GIKKIRLLTN--NPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred hHHHHHHHHHHHHHc-------CCcEEEEecC--ChHHHHHHHhCCceEEEEeecC
Confidence 889999999888765 8999988764 6767777788887777776543
No 169
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=57.98 E-value=21 Score=19.84 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=20.0
Q ss_pred cEEEEEEccCChhHHHHHHH-cCCeEeeEe
Q 047740 106 LRKTLHVDPLRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 106 ~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
..+.+.+. +=.++++||++ +||+.....
T Consensus 4 ~hv~l~v~-d~~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 4 AYAELEVP-DLERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred eEEEEecC-CHHHHHHHHHhccCcEEEeec
Confidence 34555544 33679999998 999988654
No 170
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=57.15 E-value=18 Score=20.53 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=19.7
Q ss_pred CcEEEEEEccCChhHHHHHHH-cCCeEeeE
Q 047740 105 VLRKTLHVDPLRTPAVNLYKK-FGFQVDTL 133 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~ 133 (154)
+..+.+.|..- .+|.+||.. +||+....
T Consensus 3 l~~v~l~v~Dl-~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 3 LGYLGVESSDL-DAWRRFATDVLGLQVGDR 31 (120)
T ss_pred ccEEEEEeCCH-HHHHHHHHhccCceeccC
Confidence 44566666533 578999976 89987654
No 171
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=56.18 E-value=15 Score=20.12 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.3
Q ss_pred hhHHHHHHH-cCCeEeeEe
Q 047740 117 TPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 117 ~~a~~~y~~-~Gf~~~~~~ 134 (154)
..|.+||++ +||+.....
T Consensus 7 ~~a~~FY~~~lg~~~~~~~ 25 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFDD 25 (108)
T ss_dssp HHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHhcCCEEEEeC
Confidence 578999998 999998844
No 172
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=56.04 E-value=30 Score=19.64 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=20.7
Q ss_pred CcEEEEEEccCChhHHHHHHH-cCCeEeeEe
Q 047740 105 VLRKTLHVDPLRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
+..+.+.|. +=..+++||++ +||+.....
T Consensus 2 i~hv~l~v~-d~~~~~~FY~~vLG~~~~~~~ 31 (121)
T cd07244 2 INHITLAVS-DLERSVAFYVDLLGFKLHVRW 31 (121)
T ss_pred cceEEEEEC-CHHHHHHHHHHhcCCEEEEec
Confidence 456667664 33679999976 999987643
No 173
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=55.63 E-value=30 Score=20.92 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=22.2
Q ss_pred CCcEEEEEEccCChhHHHHHHH-cCCeEeeE
Q 047740 104 TVLRKTLHVDPLRTPAVNLYKK-FGFQVDTL 133 (154)
Q Consensus 104 g~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~ 133 (154)
++..+.+.|. +=.+++.||+. +||+....
T Consensus 9 ~l~Hi~l~v~-Dl~~a~~FY~~~LGl~~~~~ 38 (154)
T cd07237 9 GLGHVVLATP-DPDEAHAFYRDVLGFRLSDE 38 (154)
T ss_pred ccCEEEEEeC-CHHHHHHHHHHccCCEEEEE
Confidence 5677878776 44689999976 99997654
No 174
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=55.05 E-value=79 Score=22.94 Aligned_cols=48 Identities=27% Similarity=0.246 Sum_probs=33.8
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEE-EccCChhH---HHHHH-HcCCe
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLH-VDPLRTPA---VNLYK-KFGFQ 129 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~-~~~~n~~a---~~~y~-~~Gf~ 129 (154)
+|+.-+-...|.-+++++|.++|+...-+. +.+....+ ..+|+ |.||.
T Consensus 327 ~~~~~~~~~~l~~~~i~~a~~~G~~~ydf~Gi~~~~~~~~~~~Gl~~FK~~F~ 379 (406)
T PF02388_consen 327 EYRKFYAPYLLQWEAIKYAKEKGIKRYDFGGISGDFDGSDPDYGLYKFKKGFG 379 (406)
T ss_dssp GCGGCTHHHHHHHHHHHHHHHTT-SEEEEEE-SSSSTTTHTTHHHHHHHHCCT
T ss_pred hhHhcCcchHHHHHHHHHHHHCCCCEEEeeCCCCCCCCCcccchHHHHhhcCC
Confidence 899999899999999999999999988775 65543332 24554 44553
No 175
>PRK14968 putative methyltransferase; Provisional
Probab=54.88 E-value=49 Score=20.45 Aligned_cols=46 Identities=9% Similarity=0.123 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeee
Q 047740 91 ALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQG 136 (154)
Q Consensus 91 ~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~ 136 (154)
.+++.+...++..|.-.+.......+.....+..+.||+.......
T Consensus 129 ~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 129 RFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred HHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeec
Confidence 4555555555555532222222234566788999999987765443
No 176
>PRK10150 beta-D-glucuronidase; Provisional
Probab=54.12 E-value=56 Score=25.06 Aligned_cols=54 Identities=17% Similarity=0.101 Sum_probs=43.7
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEee
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQ 135 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 135 (154)
.++|.++..+.+..-++.+++.|++.+++.-.+..+....+.-++|+-...+.+
T Consensus 304 ~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p 357 (604)
T PRK10150 304 DIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETP 357 (604)
T ss_pred CccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecc
Confidence 456777777888888889999999999997666667778888899998887664
No 177
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=53.78 E-value=32 Score=19.82 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=20.0
Q ss_pred cEEEEEEccCChhHHHHHHH-cCCeEeeEee
Q 047740 106 LRKTLHVDPLRTPAVNLYKK-FGFQVDTLIQ 135 (154)
Q Consensus 106 ~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~~ 135 (154)
..+.+.|.. =.++.+||.+ +||+......
T Consensus 3 ~hv~l~v~D-~~~s~~FY~~~lG~~~~~~~~ 32 (134)
T cd08348 3 SHVVLYVRD-LEAMVRFYRDVLGFTVTDRGP 32 (134)
T ss_pred eEEEEEecC-HHHHHHHHHHhcCCEEEeecc
Confidence 355555543 3578999987 9999876543
No 178
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=53.30 E-value=38 Score=20.95 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCCcEEEEE-EccC---ChhHHHHHHHcCCeEeeEe
Q 047740 93 LEAAIKKCRTRTVLRKTLH-VDPL---RTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 93 l~~~~~~~~~~g~~~i~~~-~~~~---n~~a~~~y~~~Gf~~~~~~ 134 (154)
++.++++|+..|++++-+- |..- -....+++++.||+.....
T Consensus 43 veEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV~ 88 (157)
T PF08901_consen 43 VEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSVC 88 (157)
T ss_pred HHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4677888888888877653 2211 1233466778899887754
No 179
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=52.60 E-value=28 Score=19.57 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=19.0
Q ss_pred cEEEEEEccCChhHHHHHHH-cCCeEeeE
Q 047740 106 LRKTLHVDPLRTPAVNLYKK-FGFQVDTL 133 (154)
Q Consensus 106 ~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~ 133 (154)
..+.+.|. +=.++++||++ +||+....
T Consensus 3 ~Hi~l~v~-dl~~s~~FY~~~lg~~~~~~ 30 (125)
T cd07241 3 EHVAIWTK-DLERMKAFYVTYFGATSNEK 30 (125)
T ss_pred eEEEEEec-CHHHHHHHHHHHhCCEeece
Confidence 35666665 33689999987 79987543
No 180
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=52.56 E-value=27 Score=20.19 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHHHHcCCc---EEEEEEccC---ChhHHHHH
Q 047740 87 GRGEALLEAAIKKCRTRTVL---RKTLHVDPL---RTPAVNLY 123 (154)
Q Consensus 87 Gig~~ll~~~~~~~~~~g~~---~i~~~~~~~---n~~a~~~y 123 (154)
+++..+++.+.+.|+++|.. ++.+.+..- ++.+.+|.
T Consensus 5 si~~~iv~~v~~~a~~~~~~~V~~V~l~iG~ls~V~p~~L~f~ 47 (114)
T PRK03681 5 TLCQRALELIEQQAAKHGAKRVTGVWLKIGAFSCVETSSLAFC 47 (114)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCccccCHHHHHHH
Confidence 67889999999999998655 444544332 34555555
No 181
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=52.46 E-value=73 Score=21.80 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEccCC-----------hhHHHHHHHcCCeEee
Q 047740 91 ALLEAAIKKCRTRTVLRKTLHVDPLR-----------TPAVNLYKKFGFQVDT 132 (154)
Q Consensus 91 ~ll~~~~~~~~~~g~~~i~~~~~~~n-----------~~a~~~y~~~Gf~~~~ 132 (154)
.-+..+.++|+++|+. |.+.++... ..+.+.|++.|-+-++
T Consensus 73 ~dl~elv~Ya~~KgVg-i~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvK 124 (273)
T PF10566_consen 73 FDLPELVDYAKEKGVG-IWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVK 124 (273)
T ss_dssp --HHHHHHHHHHTT-E-EEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEE
T ss_pred cCHHHHHHHHHHcCCC-EEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEe
Confidence 4456666666666653 334443333 3455566666654333
No 182
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=52.38 E-value=27 Score=19.50 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=21.9
Q ss_pred CcEEEEEEccCChhHHHHHHH-cCCeEeeEee
Q 047740 105 VLRKTLHVDPLRTPAVNLYKK-FGFQVDTLIQ 135 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~~ 135 (154)
+..+.+.|.. =.+|+.||.. +||+......
T Consensus 3 l~hv~l~v~d-l~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 3 IHHVTLAVPD-LEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred eEEEEEeeCC-HhHhHHHHHhhcCCeeeeecc
Confidence 3456666654 3689999987 9999987553
No 183
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=51.78 E-value=27 Score=19.72 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=20.7
Q ss_pred CcEEEEEEccCChhHHHHHHH-cCCeEeeEe
Q 047740 105 VLRKTLHVDPLRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
+..+.+.|..- .++.+||.. +||+.....
T Consensus 3 i~hi~l~v~d~-~~~~~Fy~~~lG~~~~~~~ 32 (125)
T cd07255 3 IGAVTLRVADL-ERSLAFYQDVLGLEVLERT 32 (125)
T ss_pred EEEEEEEECCH-HHHHHHHHhccCcEEEEcC
Confidence 34566666533 578999986 899998763
No 184
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=51.13 E-value=23 Score=21.14 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=21.4
Q ss_pred CCcEEEEEEccCChhHHHHHHH-cCCeEeeE
Q 047740 104 TVLRKTLHVDPLRTPAVNLYKK-FGFQVDTL 133 (154)
Q Consensus 104 g~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~ 133 (154)
++..+.+.|..- .+|..||+. +||+....
T Consensus 17 ~i~hv~l~v~Dl-~~a~~FY~~vLG~~~~~~ 46 (150)
T TIGR00068 17 RLLHTMLRVGDL-DKSLDFYTEVLGMKLLRK 46 (150)
T ss_pred eEEEEEEEecCH-HHHHHHHHHhcCCEEEEE
Confidence 566777777643 689999975 99987653
No 185
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=51.05 E-value=82 Score=21.93 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=53.0
Q ss_pred CCeEEEEEEEEeCCCc------eeeEEee----ccccccHHHHHHHHHHHHHHHc---------C-CcEEEEEEccCChh
Q 047740 59 HGQVVGYVMYAWPTSL------SASITKL----NYRGQGRGEALLEAAIKKCRTR---------T-VLRKTLHVDPLRTP 118 (154)
Q Consensus 59 ~~~ivG~~~~~~~~~~------~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~---------g-~~~i~~~~~~~n~~ 118 (154)
.+.+|+.+.+.+.... ...|..+ -|..-|+=..|+++++-++++. | --.+.+.+..-...
T Consensus 177 RetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll~d~YSFD~~ 256 (304)
T PF11124_consen 177 RETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLLVDVYSFDKD 256 (304)
T ss_pred cCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEEEEeeeccHH
Confidence 6789999998753321 2333333 7888999999999997666552 1 11344556777888
Q ss_pred HHHHHHHcCCeEee
Q 047740 119 AVNLYKKFGFQVDT 132 (154)
Q Consensus 119 a~~~y~~~Gf~~~~ 132 (154)
..+..++.||+.+.
T Consensus 257 ~~k~L~~~gF~~i~ 270 (304)
T PF11124_consen 257 MKKTLKKKGFKKIS 270 (304)
T ss_pred HHHHHHHCCCeeee
Confidence 99999999999987
No 186
>PF13530 SCP2_2: Sterol carrier protein domain; PDB: 3SXN_C 3N7Z_A 3RYO_B 3R1K_A 3UY5_A 2HV2_F 2I00_D 2OZG_A.
Probab=50.76 E-value=67 Score=20.84 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=35.6
Q ss_pred CCceEEEEEECCeEEEEEEEEeCC----CceeeEEeeccccccHHHHHHHHHHHHHHHc--CCcEEEEEEc
Q 047740 49 KNSGLLYIQIHGQVVGYVMYAWPT----SLSASITKLNYRGQGRGEALLEAAIKKCRTR--TVLRKTLHVD 113 (154)
Q Consensus 49 ~~~~~~~~~~~~~ivG~~~~~~~~----~~~~~i~~~~~rg~Gig~~ll~~~~~~~~~~--g~~~i~~~~~ 113 (154)
+...+++..++|++.||+.+.... .....+..+-+...---+.|+. +...+ .+..+.+...
T Consensus 23 ~~~~~~~~~~~g~~~GY~~y~~~~~~~~~~~l~V~El~~~~~~A~~aLl~----fl~~h~~~~~~v~~~~p 89 (218)
T PF13530_consen 23 DRGYAVYYDEDGEPDGYVIYRFKDDWEPGGTLEVRELVALDPEAYRALLA----FLASHRDQVDEVEWNRP 89 (218)
T ss_dssp GSEEEEEEECTSEEEEEEEEEEET-SSSTTEEEEEEEEESSHHHHHHHHH----HHHTCCTTESEEEEEES
T ss_pred CceEEEEECCCCCeeEEEEEEEcccCCCCceEEEEEEEeCCHHHHHHHHH----HHHhhhCcceEEEEEcC
Confidence 345556666699999999997544 2456666653333322334444 44433 4667777543
No 187
>PRK11478 putative lyase; Provisional
Probab=49.99 E-value=23 Score=20.24 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=19.5
Q ss_pred CCcEEEEEEccCChhHHHHHHH-cCCeEee
Q 047740 104 TVLRKTLHVDPLRTPAVNLYKK-FGFQVDT 132 (154)
Q Consensus 104 g~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~ 132 (154)
++..+.+.|. +=.++.+||.+ +||+...
T Consensus 6 ~i~hv~l~v~-D~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 6 QVHHIAIIAT-DYAVSKAFYCDILGFTLQS 34 (129)
T ss_pred eecEEEEEcC-CHHHHHHHHHHHhCCEecc
Confidence 3456667664 33678999965 8999753
No 188
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=49.48 E-value=37 Score=19.14 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=16.9
Q ss_pred EEEEEccCChhHHHHHHH-cCCeEee
Q 047740 108 KTLHVDPLRTPAVNLYKK-FGFQVDT 132 (154)
Q Consensus 108 i~~~~~~~n~~a~~~y~~-~Gf~~~~ 132 (154)
+.+.|. +-.++.+||.+ +||+...
T Consensus 4 ~~l~v~-D~~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 4 TIIYVE-DVEKTLEFYERAFGFERRF 28 (125)
T ss_pred EEEEEc-CHHHHHHHHHHhhCCeEEe
Confidence 445554 33689999987 8998754
No 189
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=49.09 E-value=36 Score=19.75 Aligned_cols=29 Identities=14% Similarity=0.019 Sum_probs=21.2
Q ss_pred CCcEEEEEEccCChhHHHHHHH-cCCeEeeE
Q 047740 104 TVLRKTLHVDPLRTPAVNLYKK-FGFQVDTL 133 (154)
Q Consensus 104 g~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~ 133 (154)
++..+.+.|. +-..+++||+. +||....+
T Consensus 4 ~i~hv~l~V~-dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 4 GLSHITLIVK-DLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred cEeEEEEEeC-CHHHHHHHHHHHhCCeeEEe
Confidence 4567777775 44689999976 99987543
No 190
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=48.62 E-value=25 Score=19.40 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=15.1
Q ss_pred hhHHHHHHH-cCCeEeeEe
Q 047740 117 TPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 117 ~~a~~~y~~-~Gf~~~~~~ 134 (154)
.++.+||.+ +||+...+.
T Consensus 10 ~~~~~fY~~~lG~~~~~~~ 28 (119)
T cd07263 10 DKALAFYTEKLGFEVREDV 28 (119)
T ss_pred HHHHHHHHhccCeEEEEee
Confidence 578999998 999988754
No 191
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=47.96 E-value=36 Score=20.75 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=20.0
Q ss_pred CcEEEEEEccCChhHHHHHHH-cCCeEeeE
Q 047740 105 VLRKTLHVDPLRTPAVNLYKK-FGFQVDTL 133 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~ 133 (154)
+..+.+.|.. =.+|++||+. +||+....
T Consensus 4 l~Hv~l~V~D-l~~s~~FY~~vLGl~~~~~ 32 (161)
T cd07256 4 LDHFNLRVPD-VDAGLAYYRDELGFRVSEY 32 (161)
T ss_pred EEEEEEecCC-HHHHHHHHHhccCCEEEEE
Confidence 4566666653 3689999987 99987643
No 192
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=47.63 E-value=36 Score=19.73 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHHHcCCcE---EEEEEccC---ChhHHHHH
Q 047740 87 GRGEALLEAAIKKCRTRTVLR---KTLHVDPL---RTPAVNLY 123 (154)
Q Consensus 87 Gig~~ll~~~~~~~~~~g~~~---i~~~~~~~---n~~a~~~y 123 (154)
+++..+++.+.+.++++|.++ +.+.+..- ++.+.+|.
T Consensus 5 sia~~iv~~v~~~a~~~~~~~V~~V~l~iG~ls~V~p~~L~fa 47 (115)
T TIGR00100 5 SLAEAMLEIVEEQAEKHQAKKVTRVTLEIGELSCVNPSQLQFA 47 (115)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEEEEccccccCHHHHHHH
Confidence 688899999999998887555 44444322 34455444
No 193
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=47.39 E-value=21 Score=25.06 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=12.4
Q ss_pred EECCeEEEEEEEEeCCC--ceeeEEee--ccccccH
Q 047740 57 QIHGQVVGYVMYAWPTS--LSASITKL--NYRGQGR 88 (154)
Q Consensus 57 ~~~~~ivG~~~~~~~~~--~~~~i~~~--~~rg~Gi 88 (154)
.+.|++||-..+..-.. ...+-..+ +|||||+
T Consensus 321 lehGQ~vgrLvyE~m~~~P~~lYG~~~gSnYq~QgL 356 (364)
T PF06559_consen 321 LEHGQIVGRLVYERMAERPERLYGAGIGSNYQGQGL 356 (364)
T ss_dssp EETT-EEEEEEEEEBSS----TTSS-----------
T ss_pred eeCCcEEEEEEehhhccCccccccccccccchhhhh
Confidence 45899999998875322 22222223 8999886
No 194
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=46.96 E-value=45 Score=19.45 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHHHHcCCc---EEEEEEc---cCChhHHHHH
Q 047740 87 GRGEALLEAAIKKCRTRTVL---RKTLHVD---PLRTPAVNLY 123 (154)
Q Consensus 87 Gig~~ll~~~~~~~~~~g~~---~i~~~~~---~~n~~a~~~y 123 (154)
.++..++..++++|+++|.. .+++.+. .-|+.+.+|.
T Consensus 5 Sla~aii~~i~~~A~~~~a~~V~~V~l~IG~ls~v~~~~l~Fa 47 (115)
T COG0375 5 SLAQAIIELIEEQAEKHGAKRVTAVWLEIGELSCVEPEALRFA 47 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEEEEEcceeccCHHHHHHH
Confidence 47889999999999999874 4444433 2356666665
No 195
>PLN02300 lactoylglutathione lyase
Probab=46.89 E-value=26 Score=23.77 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=21.5
Q ss_pred CCcEEEEEEccCChhHHHHHHH-cCCeEeeE
Q 047740 104 TVLRKTLHVDPLRTPAVNLYKK-FGFQVDTL 133 (154)
Q Consensus 104 g~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~ 133 (154)
++..+.+.|..- .+|++||++ +||+...+
T Consensus 24 ~l~Hv~l~V~Dl-e~s~~FY~~vLG~~~~~~ 53 (286)
T PLN02300 24 RMLHVVYRVGDL-DRTIKFYTECLGMKLLRK 53 (286)
T ss_pred eEEEEEEEeCCH-HHHHHHHHHhcCCEEEEe
Confidence 566777777643 589999976 89998754
No 196
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=46.56 E-value=28 Score=19.63 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=20.0
Q ss_pred CcEEEEEEccCChhHHHHHHH-cCCeEeeE
Q 047740 105 VLRKTLHVDPLRTPAVNLYKK-FGFQVDTL 133 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~ 133 (154)
+..+.+.|. +=..+++||.+ +||+....
T Consensus 5 i~hi~l~v~-d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 5 LGHVELRVT-DLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeEEEEEcC-CHHHHHHHHHhccCCEEecc
Confidence 445666664 34579999987 99998654
No 197
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=46.20 E-value=38 Score=19.10 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=18.7
Q ss_pred EEEEEEccCChhHHHHHHH----cCCeEeeEe
Q 047740 107 RKTLHVDPLRTPAVNLYKK----FGFQVDTLI 134 (154)
Q Consensus 107 ~i~~~~~~~n~~a~~~y~~----~Gf~~~~~~ 134 (154)
.+.+.|. +-.+|.+||++ +||......
T Consensus 3 hv~l~v~-d~~~s~~FY~~~f~~lg~~~~~~~ 33 (123)
T cd07262 3 HVTLGVN-DLERARAFYDAVLAPLGIKRVMED 33 (123)
T ss_pred EEEEecC-cHHHHHHHHHHHHhhcCceEEeec
Confidence 4555553 33578999998 599987543
No 198
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=45.78 E-value=24 Score=19.90 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=20.2
Q ss_pred cEEEEEEccCChhHHHHHHH-cCCeEeeEe
Q 047740 106 LRKTLHVDPLRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 106 ~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
..+.+.|. +=.++..||.+ +||+.....
T Consensus 2 ~hv~l~v~-d~~~~~~fy~~~lG~~~~~~~ 30 (128)
T cd07249 2 DHIGIAVP-DLEAAIKFYRDVLGVGPWEEE 30 (128)
T ss_pred cEEEEEeC-CHHHHHHHHHHhhCCCCcccc
Confidence 35666664 33679999987 999987543
No 199
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=45.65 E-value=13 Score=24.01 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=31.9
Q ss_pred cccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEee
Q 047740 85 GQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 85 g~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
=+|+|.+-++.++-+|.+.- ..-+ +.-+.+++.++|+....
T Consensus 120 iKGIG~ETaDsILlYa~~rp----~FVv---D~Yt~R~l~rlg~i~~k 160 (215)
T COG2231 120 IKGIGKETADSILLYALDRP----VFVV---DKYTRRLLSRLGGIEEK 160 (215)
T ss_pred cCCcchhhHHHHHHHHhcCc----ccch---hHHHHHHHHHhcccccc
Confidence 47999999999999998752 2222 35689999999998764
No 200
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=45.51 E-value=53 Score=18.20 Aligned_cols=28 Identities=4% Similarity=0.049 Sum_probs=15.2
Q ss_pred HHHHHhhcCCceEEEEEECCeEEEEEEE
Q 047740 41 SFDEDLKKKNSGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 68 (154)
.+............+..++|+++|++..
T Consensus 81 a~~~m~~~~~~~lpVvd~~~~~~Gvi~~ 108 (114)
T cd04619 81 VWQVMKQRGLKNIPVVDENARPLGVLNA 108 (114)
T ss_pred HHHHHHHcCCCeEEEECCCCcEEEEEEh
Confidence 3333333333344444446899999875
No 201
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=45.15 E-value=81 Score=20.17 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=32.8
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
++|--|+|.+++..+ |++++.+-+. |+.-..-...+|-+.++..
T Consensus 123 d~R~yGiGAQIL~dL-------GV~~~rLLtn--~~~k~~~L~g~gleVv~~~ 166 (191)
T TIGR00505 123 DERDFSLCADILEDL-------GVKKVRLLTN--NPKKIEILKKAGINIVERV 166 (191)
T ss_pred cceehhHHHHHHHHc-------CCCEEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 689999999988765 8888887754 4445556668888887765
No 202
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=45.07 E-value=42 Score=19.75 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHHHHcCCcEE---EEEEcc---CChhHHHHH
Q 047740 87 GRGEALLEAAIKKCRTRTVLRK---TLHVDP---LRTPAVNLY 123 (154)
Q Consensus 87 Gig~~ll~~~~~~~~~~g~~~i---~~~~~~---~n~~a~~~y 123 (154)
+|+..+++.+.+.++++|.+++ .+.+.. -.+.+.+|+
T Consensus 5 si~~~il~~v~~~a~~~~~~rV~~V~l~IG~ls~V~pe~L~fa 47 (124)
T PRK00762 5 SMACEIVEAVIDTAEKNNATEVTEVTLEIGRLTMLNPEQLRFM 47 (124)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEEECCccccCHHHHHHH
Confidence 6788999999999988865544 444432 134455554
No 203
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=44.85 E-value=99 Score=21.12 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=37.0
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeee
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQG 136 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~ 136 (154)
...|..+-.+.+..=+..+++.|++.+++...+..+.-..+..++|+-...+...
T Consensus 27 ~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 27 PGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp TTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-
T ss_pred ccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccc
Confidence 3445556677788888889999999999977777777888889999998876543
No 204
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=44.83 E-value=25 Score=24.70 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=15.8
Q ss_pred ccccccHHHHHHHHHHH
Q 047740 82 NYRGQGRGEALLEAAIK 98 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~ 98 (154)
.+++||+|.+.+++++.
T Consensus 258 Ah~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 258 AHMNKGLGYKFLRHIER 274 (366)
T ss_pred ccccCcccHHHHHHHHh
Confidence 99999999999999875
No 205
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=44.73 E-value=22 Score=19.73 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=13.8
Q ss_pred ChhHHHHHHH-cCCeEee
Q 047740 116 RTPAVNLYKK-FGFQVDT 132 (154)
Q Consensus 116 n~~a~~~y~~-~Gf~~~~ 132 (154)
=..+..||++ +||+...
T Consensus 11 l~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 11 PEAAAAFYADVLGLDVVM 28 (112)
T ss_pred HHHHHHHHHHhcCceEEE
Confidence 3578999987 9999764
No 206
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=44.46 E-value=45 Score=18.74 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=17.1
Q ss_pred EEEEEccCChhHHHHHHH-cCCeEeeE
Q 047740 108 KTLHVDPLRTPAVNLYKK-FGFQVDTL 133 (154)
Q Consensus 108 i~~~~~~~n~~a~~~y~~-~Gf~~~~~ 133 (154)
+.+.|. +-.+|++||++ +||+....
T Consensus 3 i~l~v~-Dl~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 3 LAIPVR-DLEAARAFYGDVLGCKEGRS 28 (125)
T ss_pred EEEEeC-CHHHHHHHHHHhcCCEEeec
Confidence 444444 33678999985 89988654
No 207
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=44.46 E-value=64 Score=18.81 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=37.6
Q ss_pred cccHH-HHHHHHHHHHHHHcCCcEEEEEEcc-----------CChhHHHHHHHcCCeEeeEe
Q 047740 85 GQGRG-EALLEAAIKKCRTRTVLRKTLHVDP-----------LRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 85 g~Gig-~~ll~~~~~~~~~~g~~~i~~~~~~-----------~n~~a~~~y~~~Gf~~~~~~ 134 (154)
+.-+| ....+.+.+.+.+.|++.+.+.+.. ....+++-..+.|++.....
T Consensus 43 ~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~ 104 (114)
T TIGR03628 43 SSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIE 104 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 33444 4566788888888999999988754 34678899999999977654
No 208
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=44.28 E-value=44 Score=19.31 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHHHHcCCc---EEEEEEccC---ChhHHHHH
Q 047740 87 GRGEALLEAAIKKCRTRTVL---RKTLHVDPL---RTPAVNLY 123 (154)
Q Consensus 87 Gig~~ll~~~~~~~~~~g~~---~i~~~~~~~---n~~a~~~y 123 (154)
+++..+++.+.+.++++|.. ++.+.+..- ++.+.+|+
T Consensus 5 si~~~iv~~v~~~a~~~~~~rV~~V~l~iG~ls~v~pe~L~f~ 47 (113)
T PRK12380 5 SLCQSAVEIIQRQAEQHDVKRVTAVWLEIGALSCVEESAVRFS 47 (113)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCccccCHHHHHHH
Confidence 67889999999999888654 444444322 34555555
No 209
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=44.11 E-value=47 Score=18.73 Aligned_cols=30 Identities=7% Similarity=0.111 Sum_probs=21.1
Q ss_pred CCcEEEEEEccCChhHHHHHHH-cCCeEeeEe
Q 047740 104 TVLRKTLHVDPLRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 104 g~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
++..+.+.|.. =.++.+||.+ +||+...+.
T Consensus 6 ~i~hv~l~v~d-l~~a~~FY~~~lG~~~~~~~ 36 (121)
T cd09013 6 HLAHVELLTPK-PEESLWFFTDVLGLEETGRE 36 (121)
T ss_pred EeeEEEEEeCC-HHHHHHHHHhCcCCEEEeec
Confidence 34566666643 3689999987 699987653
No 210
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=43.85 E-value=71 Score=19.18 Aligned_cols=46 Identities=11% Similarity=0.189 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEcc-----------CChhHHHHHHHcCCeEeeEe
Q 047740 89 GEALLEAAIKKCRTRTVLRKTLHVDP-----------LRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 89 g~~ll~~~~~~~~~~g~~~i~~~~~~-----------~n~~a~~~y~~~Gf~~~~~~ 134 (154)
+....+.+.+.+.+.|++.+.+.+.. ....|++-..+.|++.....
T Consensus 55 Aq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~ 111 (132)
T PRK09607 55 AMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIE 111 (132)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 44567778888888899999988765 34578999999999977654
No 211
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=43.65 E-value=32 Score=19.74 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=19.2
Q ss_pred CcEEEEEEccCChhHHHHHHH-cCCeEeeE
Q 047740 105 VLRKTLHVDPLRTPAVNLYKK-FGFQVDTL 133 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~ 133 (154)
+..+.+.|. +=.+|.+||.+ +||+...+
T Consensus 7 l~~v~l~v~-d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 7 IAYVRLGTR-DLAGATRFATDILGLQVAER 35 (124)
T ss_pred eeEEEEeeC-CHHHHHHHHHhccCceeccC
Confidence 345566655 33579999977 79997654
No 212
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=43.33 E-value=49 Score=19.24 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=20.2
Q ss_pred CcEEEEEEccCChhHHHHHHH-cCCeEeeEe
Q 047740 105 VLRKTLHVDPLRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
+..+.+.|. +=.+|.+||++ +||+.....
T Consensus 4 l~hi~l~v~-dl~~s~~FY~~vlGl~~~~~~ 33 (134)
T cd08360 4 LGHVVLFVP-DVEAAEAFYRDRLGFRVSDRF 33 (134)
T ss_pred eeEEEEEcC-CHHHHHHHHHHhcCCEEEEEe
Confidence 345666664 33679999976 899987653
No 213
>PRK06724 hypothetical protein; Provisional
Probab=43.26 E-value=62 Score=18.90 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=21.5
Q ss_pred CCcEEEEEEccCChhHHHHHHH----cCCeEee
Q 047740 104 TVLRKTLHVDPLRTPAVNLYKK----FGFQVDT 132 (154)
Q Consensus 104 g~~~i~~~~~~~n~~a~~~y~~----~Gf~~~~ 132 (154)
++..+.+.|..- .+|++||++ +||+...
T Consensus 7 ~i~Hv~l~V~Dl-e~s~~FY~~vlg~lg~~~~~ 38 (128)
T PRK06724 7 GIHHIEFWVANL-EESISFYDMLFSIIGWRKLN 38 (128)
T ss_pred ccCEEEEEeCCH-HHHHHHHHHHHhhCCcEEee
Confidence 577888888643 688999998 6888753
No 214
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=43.17 E-value=86 Score=19.91 Aligned_cols=45 Identities=13% Similarity=0.007 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEEccCChh---HHHHHHHcCCeEee
Q 047740 88 RGEALLEAAIKKCRTRTVLRKTLHVDPLRTP---AVNLYKKFGFQVDT 132 (154)
Q Consensus 88 ig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~---a~~~y~~~Gf~~~~ 132 (154)
-+..+...+++.+.+.+.+.+.=++..+-.. .++.+++.||+..=
T Consensus 77 ~a~~~~~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l 124 (199)
T PF06414_consen 77 EASRLAEKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVEL 124 (199)
T ss_dssp HHHHHHHHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEE
Confidence 3677888889999998886555445543222 23577889998643
No 215
>PRK10291 glyoxalase I; Provisional
Probab=42.41 E-value=33 Score=19.70 Aligned_cols=18 Identities=11% Similarity=0.408 Sum_probs=14.3
Q ss_pred ChhHHHHHHH-cCCeEeeE
Q 047740 116 RTPAVNLYKK-FGFQVDTL 133 (154)
Q Consensus 116 n~~a~~~y~~-~Gf~~~~~ 133 (154)
=.+|+.||++ +||+....
T Consensus 7 le~s~~FY~~~LG~~~~~~ 25 (129)
T PRK10291 7 LQRSIDFYTNVLGMKLLRT 25 (129)
T ss_pred HHHHHHHHHhccCCEEEEe
Confidence 3579999976 99998654
No 216
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=42.31 E-value=50 Score=19.04 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=17.1
Q ss_pred EEEEEccCChhHHHHHHH-cCCeEeeE
Q 047740 108 KTLHVDPLRTPAVNLYKK-FGFQVDTL 133 (154)
Q Consensus 108 i~~~~~~~n~~a~~~y~~-~Gf~~~~~ 133 (154)
+.+.|. +=.+|++||++ +||+....
T Consensus 3 v~l~V~-dl~~a~~Fy~~~lG~~~~~~ 28 (131)
T cd08343 3 VVLRTP-DVAATAAFYTEVLGFRVSDR 28 (131)
T ss_pred EEEEcC-CHHHHHHHHHhcCCCEEEEE
Confidence 444444 33578999986 89998654
No 217
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=42.30 E-value=91 Score=20.06 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=33.1
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEee
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQ 135 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 135 (154)
++|.-|+|.+++..+ |++++.+-+. |+.-..-...+|.+.++..+
T Consensus 126 d~R~yGiGAQIL~dL-------GV~~mrLLtn--~~~k~~~L~g~GleV~~~~~ 170 (197)
T PRK00393 126 DERDYTLAADMLKAL-------GVKKVRLLTN--NPKKVEALTEAGINIVERVP 170 (197)
T ss_pred cceehhHHHHHHHHc-------CCCEEEECCC--CHHHHHHHHhCCCEEEEEec
Confidence 689999999888654 8888887654 44445556688888887653
No 218
>PF02794 HlyC: RTX toxin acyltransferase family; InterPro: IPR003996 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. Four principal exotoxin secretion systems have been described. In the type II and IV secretion systems, toxins are first exported to the periplasm by way of a cleaved N-terminal signal sequence; a second set of proteins is used for extracellular transport (type II), or the C terminus of the exotoxin itself is used (type IV). Type III secretion involves at least 20 molecules that assemble into a needle; effector proteins are then translocated through this without need of a signal sequence. In the Type I system, a complete channel is formed through both membranes, and the secretion signal is carried on the C terminus of the exotoxin. The RTX (repeats in toxin) family of cytolytic toxins belong to the Type I secretion system, and are important virulence factors in Gram-negative bacteria. As well as the C-terminal signal sequence, several glycine-rich repeats are also found. These are essential for binding calcium, and are critical for the biological activity of the secreted toxins []. All RTX toxin operons exist in the order rtxCABD, RtxA protein being the structural component of the exotoxin, both RtxB and D being required for its export from the bacterial cell; RtxC is an acyl-carrier-protein-dependent acyl- modification enzyme, required to convert RtxA to its active form []. Escherichia coli haemolysin (HlyA) is often quoted as the model for RTX toxins. Recent work on its relative rtxC gene product HlyC [] has revealed that it provides the acylation aspect for post-translational modification of two internal lysine residues in the HlyA protein. Other residues, including His23 and two conserved tyrosine residues, also appear to be important []. ; GO: 0016746 transferase activity, transferring acyl groups, 0009404 toxin metabolic process, 0005737 cytoplasm
Probab=42.25 E-value=48 Score=19.87 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=13.6
Q ss_pred eEEEEEECCeEEEEEEEE
Q 047740 52 GLLYIQIHGQVVGYVMYA 69 (154)
Q Consensus 52 ~~~~~~~~~~ivG~~~~~ 69 (154)
.+.+..++|.+|||++..
T Consensus 36 Q~~l~~~~g~Pvaf~~WA 53 (133)
T PF02794_consen 36 QYRLYSEDGRPVAFCSWA 53 (133)
T ss_pred cEEEEEeCCeEEEEEEhh
Confidence 344445899999999876
No 219
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=42.24 E-value=31 Score=18.91 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=15.0
Q ss_pred hhHHHHHHH-cCCeEeeEe
Q 047740 117 TPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 117 ~~a~~~y~~-~Gf~~~~~~ 134 (154)
.++.+||++ +||+.....
T Consensus 10 ~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 10 ERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred HHHHHHHHhccCeEEEEEc
Confidence 579999999 999987654
No 220
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=42.21 E-value=61 Score=20.60 Aligned_cols=29 Identities=7% Similarity=0.326 Sum_probs=20.4
Q ss_pred CcEEEEEEccCChhHHHHHH-HcCCeEeeEe
Q 047740 105 VLRKTLHVDPLRTPAVNLYK-KFGFQVDTLI 134 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~-~~Gf~~~~~~ 134 (154)
+..+.+.|.. -..|+.||. .+||+...+.
T Consensus 28 ~~Ht~i~V~D-le~Si~FY~~vLG~~~~~r~ 57 (185)
T PLN03042 28 MQQTMFRIKD-PKASLDFYSRVLGMSLLKRL 57 (185)
T ss_pred EEEEEEeeCC-HHHHHHHHHhhcCCEEEEEE
Confidence 3455566653 368999997 5899987764
No 221
>PRK13683 hypothetical protein; Provisional
Probab=41.91 E-value=9.6 Score=20.73 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEEccC----------ChhHHHHHHHcCCeEeeEeeec
Q 047740 88 RGEALLEAAIKKCRTRTVLRKTLHVDPL----------RTPAVNLYKKFGFQVDTLIQGY 137 (154)
Q Consensus 88 ig~~ll~~~~~~~~~~g~~~i~~~~~~~----------n~~a~~~y~~~Gf~~~~~~~~~ 137 (154)
=+..+.+.+.+..+.-+..-+.++|... ...|+.+|+|-|-.-.++.++|
T Consensus 24 dA~alYq~I~~am~sg~P~llELtCek~~~KkiavlssEi~aVqi~eKs~~a~~~krPGF 83 (87)
T PRK13683 24 DAEALYQQIRQAMRSGNPRLLELTCEKVEDKKIAVLSSEISAVQIYEKSGAAGGGKRPGF 83 (87)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEecCcCCcEEEEEeeeeEEEEEEeccCccCCCCCCcc
Confidence 3567777777777665777888888742 2345666766665544444444
No 222
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=41.88 E-value=31 Score=25.62 Aligned_cols=32 Identities=16% Similarity=0.019 Sum_probs=27.8
Q ss_pred HHcCCcEEEEEEccCChhHHHHHHHcCCeEee
Q 047740 101 RTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 101 ~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
...|-+.+.+.|..+|+.-+.|.++.||....
T Consensus 330 ~HlGGDEV~~~CW~s~~~Iq~fM~~kGfg~~~ 361 (542)
T KOG2499|consen 330 FHLGGDEVSTPCWKSNPEIQDFMRKKGFGLDT 361 (542)
T ss_pred eecCCceeecccccCChHHHHHHHhCCCCchH
Confidence 44588899999999999999999999997654
No 223
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=40.66 E-value=2e+02 Score=23.39 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=46.5
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
..+|++....++..-+..+++.|++.++.+-.+.++.-..+.-++|+-...+.
T Consensus 312 ~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea 364 (808)
T COG3250 312 PILGRVTDEDAMERDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEA 364 (808)
T ss_pred CccccccCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEec
Confidence 88999999999999999999999999999966776667777789999888765
No 224
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=40.60 E-value=93 Score=19.56 Aligned_cols=104 Identities=11% Similarity=0.122 Sum_probs=59.9
Q ss_pred hhHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEe----CCCceeeEEee----ccccccHHH
Q 047740 19 FVVDEIVKMEKKIFPKHESLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAW----PTSLSASITKL----NYRGQGRGE 90 (154)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~----~~~~~~~i~~~----~~rg~Gig~ 90 (154)
.|.+.+.++....|...... +.+...+.......++ ++..-|.+.+.+ ..+...++..+ ..||.|++.
T Consensus 32 ~d~~kL~~ll~~sf~~~~~v-~~yl~~l~~~~~~iy~---d~~y~~~AIVt~e~~~~~~~v~yLdKFav~~~~~g~gv~D 107 (170)
T PF04768_consen 32 VDLDKLRALLERSFGGKLDV-DHYLDRLNNRLFKIYV---DEDYEGAAIVTPEGPDSNGPVPYLDKFAVSKSAQGSGVAD 107 (170)
T ss_dssp S-HHHHHHHHHHHSTSSSBH-TTHHHHHHTS-SEEEE---ETTSSEEEEEEEE-SCTCTSEEEEEEEEE-HHHHHTTHHH
T ss_pred CCHHHHHHHHHhcccccccH-HHHHHHhhccceEEEE---eCCceEEEEEEecCCCCCCCCeEEEEEEecchhhhcCHHH
Confidence 46788888877777444443 4455555444433333 333444444433 23345666666 889999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEccCChhHHHHH--HHcCCeEee
Q 047740 91 ALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLY--KKFGFQVDT 132 (154)
Q Consensus 91 ~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y--~~~Gf~~~~ 132 (154)
.+...+.+. ...+...+.++|+ ..++| +.-|+-..+
T Consensus 108 ~vf~~i~~d-----~p~L~Wrsr~~n~-~~~Wyf~rs~G~~~~~ 145 (170)
T PF04768_consen 108 NVFNAIRKD-----FPKLFWRSREDNP-NNKWYFERSDGSFKRN 145 (170)
T ss_dssp HHHHHHHHH------SSEEEEEETT-T-THHHHHHH-SEEEEET
T ss_pred HHHHHHHHh-----ccceEEEecCCCC-cccEEEEeeEEEEECC
Confidence 988888443 2347787887765 55677 346665533
No 225
>PF13264 DUF4055: Domain of unknown function (DUF4055)
Probab=40.40 E-value=83 Score=18.94 Aligned_cols=49 Identities=14% Similarity=0.020 Sum_probs=34.7
Q ss_pred CeEEEEEEEEeCCCceeeEEeeccccccHH--HHHHHHHHHHHHHcCCcEEE
Q 047740 60 GQVVGYVMYAWPTSLSASITKLNYRGQGRG--EALLEAAIKKCRTRTVLRKT 109 (154)
Q Consensus 60 ~~ivG~~~~~~~~~~~~~i~~~~~rg~Gig--~~ll~~~~~~~~~~g~~~i~ 109 (154)
+-.||--.... -+....+..+++.|.++. ++.++..++.+...|.+-+.
T Consensus 43 ~i~vG~~~~~~-lp~~~~~~yve~~g~~i~a~~~~l~~~e~qM~~lGa~ll~ 93 (138)
T PF13264_consen 43 GIVVGSSSALD-LPEGGDAGYVEHTGSAIAAGREALDDLENQMRQLGARLLE 93 (138)
T ss_pred CeEEeCCccee-CCCCCceeEEecCchhHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 34555533322 222455666699999999 99999999999999887443
No 226
>PLN02979 glycolate oxidase
Probab=39.38 E-value=71 Score=22.94 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCe
Q 047740 91 ALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQ 129 (154)
Q Consensus 91 ~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~ 129 (154)
.+.+.+++.|.+.|++.+.++|+..-..-+.--.+.||.
T Consensus 134 ~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~ 172 (366)
T PLN02979 134 NVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFT 172 (366)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCC
Confidence 355666777788899999999986544333333455664
No 227
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=39.00 E-value=50 Score=15.97 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=18.5
Q ss_pred ccccccHHHHHHHHHHHHHHHc
Q 047740 82 NYRGQGRGEALLEAAIKKCRTR 103 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~ 103 (154)
-||+.-+|..|.+.+-+...+.
T Consensus 5 lYR~stlG~aL~dtLDeli~~~ 26 (49)
T PF02268_consen 5 LYRRSTLGIALTDTLDELIQEG 26 (49)
T ss_dssp GGGCSHHHHHHHHHHHHHHHTT
T ss_pred HHHcchHHHHHHHHHHHHHHcC
Confidence 3899999999999988877664
No 228
>PF03588 Leu_Phe_trans: Leucyl/phenylalanyl-tRNA protein transferase; InterPro: IPR004616 Leucyl/phenylalanyl-tRNA--protein transferase 2.3.2.6 from EC transfers a Leu or Phe to the amino end of certain proteins to enable degradation. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway.; GO: 0008914 leucyltransferase activity, 0030163 protein catabolic process; PDB: 2Z3L_A 2Z3O_A 2Z3P_A 2DPT_B 2Z3M_B 2Z3N_B 2DPS_B 2Z3K_B 2CXA_A.
Probab=38.57 E-value=1e+02 Score=19.49 Aligned_cols=85 Identities=11% Similarity=-0.013 Sum_probs=53.0
Q ss_pred HHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCCCceeeEEee-ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCCh
Q 047740 39 ARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKL-NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRT 117 (154)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~-~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~ 117 (154)
.+.+.+.......+.+=+++++++||-.....-.. ...+.- -.+..+-++..+-.+.+++++.|+.-+-+.+..
T Consensus 86 ~~aY~~Lh~~G~aHSvEvw~~~~LvGGlyGv~iG~--~F~GESMFs~~~~ASKval~~L~~~L~~~g~~liD~Q~~~--- 160 (173)
T PF03588_consen 86 IEAYTELHELGYAHSVEVWQGGELVGGLYGVAIGG--VFFGESMFSRVSNASKVALVALVEHLRQCGFQLIDCQMPT--- 160 (173)
T ss_dssp HHHHHHHHHTTSEEEEEEEETTEEEEEEEEEEETT--EEEEEEEEESSTTHHHHHHHHHHHHHHHTT--EEEEES-----
T ss_pred HHHHHHHHHcCeeEEEeeecCCeeEEeeeCEEECC--EEEeccccccCCChHHHHHHHHHHHHHHCCCcEEEeccCC---
Confidence 33444444445567777788999998876643332 222222 456678899999999999999998866665432
Q ss_pred hHHHHHHHcCCeEe
Q 047740 118 PAVNLYKKFGFQVD 131 (154)
Q Consensus 118 ~a~~~y~~~Gf~~~ 131 (154)
...+++|-+.+
T Consensus 161 ---~hl~slGa~~i 171 (173)
T PF03588_consen 161 ---PHLASLGAKEI 171 (173)
T ss_dssp ---HHHHHTTEEEE
T ss_pred ---HHHHhcCCEeC
Confidence 24466776654
No 229
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=38.54 E-value=72 Score=17.72 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=18.1
Q ss_pred EEEEEEccCChhHHHHHHH-cCCeEeeE
Q 047740 107 RKTLHVDPLRTPAVNLYKK-FGFQVDTL 133 (154)
Q Consensus 107 ~i~~~~~~~n~~a~~~y~~-~Gf~~~~~ 133 (154)
.+.+.|. +=.+|.+||.+ +||+....
T Consensus 3 hv~i~v~-d~~~a~~fY~~~lG~~~~~~ 29 (121)
T cd07233 3 HTMLRVK-DLEKSLDFYTDVLGMKLLRR 29 (121)
T ss_pred eEEEEec-CcHHHHHHHHhccCCeEEEE
Confidence 4555553 33678999976 69998764
No 230
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=38.25 E-value=1e+02 Score=22.36 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=23.8
Q ss_pred HHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEee
Q 047740 101 RTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQ 135 (154)
Q Consensus 101 ~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 135 (154)
+..|++++.|-+ +|+.-+.-.+.+|.+.+++.+
T Consensus 324 ~dLGV~~irLLT--Nnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 324 KALGIEKVRLLT--NNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHcCCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 344788777664 466677777899999988764
No 231
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=38.23 E-value=51 Score=18.54 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=17.6
Q ss_pred EEEEEEccCChhHHHHHHH-cCCeEee
Q 047740 107 RKTLHVDPLRTPAVNLYKK-FGFQVDT 132 (154)
Q Consensus 107 ~i~~~~~~~n~~a~~~y~~-~Gf~~~~ 132 (154)
.+.+.|. +-.+|..||+. +||+...
T Consensus 5 ~~~l~v~-D~~~a~~FY~~~lG~~~~~ 30 (120)
T cd09011 5 NPLLVVK-DIEKSKKFYEKVLGLKVVM 30 (120)
T ss_pred EEEEEEC-CHHHHHHHHHHhcCCEEee
Confidence 4455554 44689999985 9998753
No 232
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=37.91 E-value=49 Score=19.08 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=17.2
Q ss_pred cHHHHHHHHHHHHHHHcCCcEE
Q 047740 87 GRGEALLEAAIKKCRTRTVLRK 108 (154)
Q Consensus 87 Gig~~ll~~~~~~~~~~g~~~i 108 (154)
+++..+++.+.+.+.+++.+++
T Consensus 5 si~~~iv~~v~~~a~~~~~~kV 26 (113)
T PF01155_consen 5 SIAQSIVEIVEEEAEENGAKKV 26 (113)
T ss_dssp HHHHHHHHHHHHHHHCTT-SEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEE
Confidence 5788999999999998765443
No 233
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=37.44 E-value=74 Score=18.65 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=20.4
Q ss_pred CCcEEEEEEccCChhHHHHHH-HcCCeEeeE
Q 047740 104 TVLRKTLHVDPLRTPAVNLYK-KFGFQVDTL 133 (154)
Q Consensus 104 g~~~i~~~~~~~n~~a~~~y~-~~Gf~~~~~ 133 (154)
++..+.+.|.. =.++.+||+ .+||+....
T Consensus 4 ~i~hi~L~v~D-l~~s~~FY~~~lG~~~~~~ 33 (139)
T PRK04101 4 GINHICFSVSN-LEKSIEFYEKVLGAKLLVK 33 (139)
T ss_pred cEEEEEEEecC-HHHHHHHHHhccCCEEEee
Confidence 45566676653 368999996 599998744
No 234
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=37.19 E-value=77 Score=17.61 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=17.2
Q ss_pred EEEccCChhHHHHHHH-cCCeEeeEe
Q 047740 110 LHVDPLRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 110 ~~~~~~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
+.|. +-..+.+||.+ +||+.....
T Consensus 7 l~v~-d~~~a~~FY~~~lG~~~~~~~ 31 (122)
T cd07246 7 LIVR-DAAAAIDFYKKAFGAEELERM 31 (122)
T ss_pred EEEC-CHHHHHHHHHHhhCCEEEEEE
Confidence 4443 44678999984 899987654
No 235
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=37.04 E-value=67 Score=17.86 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=18.7
Q ss_pred HHHHHHHHhhcCCceEEEEEECCeEEEEE
Q 047740 38 LARSFDEDLKKKNSGLLYIQIHGQVVGYV 66 (154)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~ivG~~ 66 (154)
....+...+.++..++=++..+|++||=.
T Consensus 53 ~~~~~a~~I~ede~fYPlV~i~~eiV~EG 81 (93)
T PF07315_consen 53 HDQQFAERILEDELFYPLVVINDEIVAEG 81 (93)
T ss_dssp HHHHHHHHHHTTSS-SSEEEETTEEEEES
T ss_pred HHHHHHHHHHhcccccceEEECCEEEecC
Confidence 34567777776665554555699999854
No 236
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=36.86 E-value=1.1e+02 Score=23.52 Aligned_cols=35 Identities=11% Similarity=0.052 Sum_probs=26.2
Q ss_pred HHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeee
Q 047740 100 CRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQG 136 (154)
Q Consensus 100 ~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~ 136 (154)
.+..|++++.+-+ +|+.-+.-.+.+|.+.+++.+-
T Consensus 346 L~dLGI~kIrLLT--NNP~Ki~~L~~~GIeVv~rvpl 380 (555)
T PRK09319 346 LNDLGIKRLRLIT--NNPRKIAGLGGYGLEVVDRVPL 380 (555)
T ss_pred HHHcCCCEEEECC--CCHHHHHHHHhCCCEEEEEecc
Confidence 3445888887765 4777788888999999987743
No 237
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=36.79 E-value=85 Score=18.02 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEccCC---hhHHHHHHHcCCeEeeEe
Q 047740 91 ALLEAAIKKCRTRTVLRKTLHVDPLR---TPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 91 ~ll~~~~~~~~~~g~~~i~~~~~~~n---~~a~~~y~~~Gf~~~~~~ 134 (154)
.+.+.+.+.+.+.|+..+.+.+..-+ .++++.+.+.|++.....
T Consensus 47 ~~a~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~I~ 93 (110)
T PF00411_consen 47 QAAEKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVSIT 93 (110)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEEEE
Confidence 56677778888889999998876543 467888888998866544
No 238
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.67 E-value=67 Score=21.62 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=29.3
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEcc
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDP 114 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 114 (154)
...|.-.|..-+..++.+|.+.|++.+.+.+..
T Consensus 42 ~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS 74 (249)
T PRK14831 42 RIMGHRRGVDALKDLLRCCKDWGIGALTAYAFS 74 (249)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 556888899999999999999999999998776
No 239
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=36.64 E-value=85 Score=22.51 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCe
Q 047740 90 EALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQ 129 (154)
Q Consensus 90 ~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~ 129 (154)
+.+.+.+++.|.+.|++.+.++|+..-..-+.-=.+.||.
T Consensus 127 r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~ 166 (361)
T cd04736 127 RELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFA 166 (361)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCC
Confidence 5677888888888999999999986533333333456664
No 240
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=36.20 E-value=38 Score=25.01 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=37.7
Q ss_pred eeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEc-----cCChhHHHHHHHcCCeEee
Q 047740 76 ASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVD-----PLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 76 ~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~-----~~n~~a~~~y~~~Gf~~~~ 132 (154)
+.|..+ +||+-|+|..-+..+.++..+.-+....-.-+ ..-..-..|+++.||+..-
T Consensus 242 ariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~~gfkylw 307 (593)
T COG2401 242 ARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLW 307 (593)
T ss_pred hheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhhhceeeee
Confidence 345555 99999999999999999999874443322100 0001123589999998653
No 241
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=36.11 E-value=69 Score=18.63 Aligned_cols=22 Identities=5% Similarity=0.063 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHHHHHcCCcEE
Q 047740 87 GRGEALLEAAIKKCRTRTVLRK 108 (154)
Q Consensus 87 Gig~~ll~~~~~~~~~~g~~~i 108 (154)
+++..+++.+.+.++++|..++
T Consensus 5 si~~~il~~v~~~a~~~~~~~V 26 (117)
T PRK00564 5 SVVSSLIALCEEHAKKNQAHKI 26 (117)
T ss_pred HHHHHHHHHHHHHHHHcCCCeE
Confidence 5788899999988888765443
No 242
>PLN02367 lactoylglutathione lyase
Probab=35.79 E-value=82 Score=21.00 Aligned_cols=29 Identities=7% Similarity=0.353 Sum_probs=20.3
Q ss_pred CcEEEEEEccCChhHHHHHHH-cCCeEeeEe
Q 047740 105 VLRKTLHVDPLRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
+....+.|.. =..+++||.+ +||+...+.
T Consensus 76 ~~HtmlRVkD-le~Sl~FYt~vLGm~ll~r~ 105 (233)
T PLN02367 76 MQQTMYRIKD-PKASLDFYSRVLGMSLLKRL 105 (233)
T ss_pred EEEEEEEeCC-HHHHHHHHHHhcCCEEeEEE
Confidence 3456666653 3579999965 999987754
No 243
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=35.71 E-value=99 Score=19.84 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeE
Q 047740 89 GEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQV 130 (154)
Q Consensus 89 g~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~ 130 (154)
|+-|+.+.++.+.+.++..+.+.+......-.....+.|.+.
T Consensus 25 gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~~~~~~ 66 (229)
T cd02540 25 GKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANPNVEF 66 (229)
T ss_pred CccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCCCCcEE
Confidence 468888888888888888888877655444444444445543
No 244
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=35.68 E-value=1e+02 Score=22.25 Aligned_cols=34 Identities=9% Similarity=-0.113 Sum_probs=22.2
Q ss_pred HHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 98 KKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 98 ~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
+..+..|+.++.|- +|+.-+.-.+.+|.+.+++.
T Consensus 332 qILr~LGV~kirLL---nNP~K~~~L~~~GIeV~~~v 365 (369)
T PRK12485 332 QILQDLGVGKLRHL---GPPLKYAGLTGYDLEVVESI 365 (369)
T ss_pred HHHHHcCCCEEEEC---CCchhhhhhhhCCcEEEEEe
Confidence 33445588888877 35555556677787777654
No 245
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=35.28 E-value=1.8e+02 Score=21.25 Aligned_cols=103 Identities=9% Similarity=0.200 Sum_probs=58.6
Q ss_pred hHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCC---CceeeEEee----cccc-ccHHHH
Q 047740 20 VVDEIVKMEKKIFPKHESLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPT---SLSASITKL----NYRG-QGRGEA 91 (154)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~---~~~~~i~~~----~~rg-~Gig~~ 91 (154)
|++.+..+-++.|..... ...++..+..+-... ...|.--|.+.+...+ +...++..+ +.+| -|++..
T Consensus 346 dl~r~q~LI~~SFkRTLd-~h~y~~r~~~~La~~---iVsgdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd~ 421 (495)
T COG5630 346 DLPRLQHLIQSSFKRTLD-PHYYETRINTPLARA---IVSGDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEGISDA 421 (495)
T ss_pred CcHHHHHHHHHHHhhccC-HHHHHHhccCcceeE---EeeccceeeEEEEeeccCCCCCcceeeeeccccccccchHHHH
Confidence 456667776666654444 245555555443222 3346666777665432 244555555 8898 999998
Q ss_pred HHHHHHHHHHHcCCcEEEEEEccCChhHHHHH--HHcCCeEe
Q 047740 92 LLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLY--KKFGFQVD 131 (154)
Q Consensus 92 ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y--~~~Gf~~~ 131 (154)
+..-+.+..-+ .+.+....+| .+.+|| ++.|+-..
T Consensus 422 vfniM~e~fP~----eL~WRSR~~N-~vNkwYf~rSvg~lk~ 458 (495)
T COG5630 422 VFNIMREEFPN----ELFWRSRHNN-QVNKWYFARSVGYLKQ 458 (495)
T ss_pred HHHHHHHhCcH----hhhhhhcccC-cchheeeehhhehhhc
Confidence 88777655432 3444444444 445555 55666444
No 246
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=35.25 E-value=1e+02 Score=20.68 Aligned_cols=46 Identities=15% Similarity=0.297 Sum_probs=30.2
Q ss_pred ccccHHHHHHHHHHHHHH-HcCCcEEEEEEccCChhHHHHHHHcCCeE
Q 047740 84 RGQGRGEALLEAAIKKCR-TRTVLRKTLHVDPLRTPAVNLYKKFGFQV 130 (154)
Q Consensus 84 rg~Gig~~ll~~~~~~~~-~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~ 130 (154)
..-|+|+..+...+..+. ..|.+.+.+.+++.|.....+ ..++-..
T Consensus 10 ~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~-~~l~~~~ 56 (241)
T PRK13886 10 GKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGY-KALNVRR 56 (241)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhH-HhcCCcc
Confidence 345888888776665554 458888888898888654444 4444333
No 247
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=35.13 E-value=1.3e+02 Score=23.12 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 91 ALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 91 ~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
.+++.+.+.|++.|...-.+.....++....++..+||.....-
T Consensus 482 ~~i~~vi~~a~~~g~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~ 525 (565)
T TIGR01417 482 RLIKLVIDAAKAEGIWVGMCGEMAGDERAIPLLLGLGLRELSMS 525 (565)
T ss_pred HHHHHHHHHHHHcCCeEEEeCCcCCCHHHHHHHHHCCCCEEEEC
Confidence 57777888888887654444456778899999999999887644
No 248
>PRK07758 hypothetical protein; Provisional
Probab=35.10 E-value=48 Score=18.59 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=17.5
Q ss_pred cccHHHHHHHHHHHHHHHcCC
Q 047740 85 GQGRGEALLEAAIKKCRTRTV 105 (154)
Q Consensus 85 g~Gig~~ll~~~~~~~~~~g~ 105 (154)
=+|+|..-++.+.+...+.|+
T Consensus 72 iknlGkKSL~EIkekL~E~GL 92 (95)
T PRK07758 72 LHGMGPASLPKLRKALEESGL 92 (95)
T ss_pred ccCCCHHHHHHHHHHHHHcCC
Confidence 468999999999998888765
No 249
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=35.06 E-value=76 Score=19.46 Aligned_cols=29 Identities=10% Similarity=0.179 Sum_probs=20.4
Q ss_pred CCcEEEEEEccCChhHHHHHH-HcCCeEeeE
Q 047740 104 TVLRKTLHVDPLRTPAVNLYK-KFGFQVDTL 133 (154)
Q Consensus 104 g~~~i~~~~~~~n~~a~~~y~-~~Gf~~~~~ 133 (154)
++..+.+.|.. =.+++.||. .+||+....
T Consensus 6 ~i~Hi~l~V~D-le~a~~FY~~vLG~~~~~~ 35 (166)
T cd09014 6 RLDHVNLLASD-VDANRDFMEEVLGFRLREQ 35 (166)
T ss_pred eeeeEEEEcCC-HHHHHHHHHHccCCEEEEE
Confidence 34456666654 368999996 699998654
No 250
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=34.80 E-value=49 Score=17.59 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=16.7
Q ss_pred CChhHHHHHHH-cCCeEeeEee
Q 047740 115 LRTPAVNLYKK-FGFQVDTLIQ 135 (154)
Q Consensus 115 ~n~~a~~~y~~-~Gf~~~~~~~ 135 (154)
+-..+.+||.+ +||+......
T Consensus 8 d~~~~~~fy~~~lg~~~~~~~~ 29 (112)
T cd06587 8 DLEAAVAFYEEVLGFEVLFRNG 29 (112)
T ss_pred CHHHHHHHHHhccCCEEEEeec
Confidence 34678999998 9999877663
No 251
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=34.75 E-value=1.1e+02 Score=22.70 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=24.2
Q ss_pred HHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEee
Q 047740 101 RTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQ 135 (154)
Q Consensus 101 ~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 135 (154)
+..|++++.+-+ +|+.-+.-.+.+|.+.+++.+
T Consensus 377 ~dLGI~~irLLT--NNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 377 RDLGVRTMRLMT--NNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHcCCCEEEECC--CCHHHHHHHhhCCCEEEEEec
Confidence 445888887764 366667778899999887764
No 252
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=34.22 E-value=1e+02 Score=22.21 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=23.5
Q ss_pred HHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 98 KKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 98 ~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
+..+..|++++.|-+ |+.-+.-.+.+|.+.+++.
T Consensus 329 qIL~~Lgv~~irLlT---np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 329 QILRDLGVGKMRLLS---SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHcCCCeEEECC---CcHHHHhhhhCCcEEEEEe
Confidence 344556888888875 4556666678888887654
No 253
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=34.19 E-value=68 Score=19.25 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEee
Q 047740 90 EALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 90 ~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
+-|++.+++.+.+.++..+.+.+.. ..-...+.+.+.+.+.
T Consensus 24 ~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~~~~~v~ 64 (160)
T PF12804_consen 24 KPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERYGIKVVV 64 (160)
T ss_dssp EEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTTTSEEEE
T ss_pred ccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhccCceEEE
Confidence 4577788888887788888888766 3333445667776654
No 254
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=34.15 E-value=69 Score=19.63 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCC
Q 047740 89 GEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGF 128 (154)
Q Consensus 89 g~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf 128 (154)
|+.|+++.++.+...++..+.+.+...+......+...|.
T Consensus 25 g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~ 64 (186)
T cd04182 25 GKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAGLPV 64 (186)
T ss_pred CeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcCCCe
Confidence 4667777777777767777877766544433334444454
No 255
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=33.86 E-value=1.2e+02 Score=22.10 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=23.7
Q ss_pred HHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEee
Q 047740 101 RTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQ 135 (154)
Q Consensus 101 ~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 135 (154)
+..|+.++.+-+ +|+.-+.-.+.+|.+.+++.+
T Consensus 343 ~~LGv~~irLLT--nnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 343 VDLGVRSMRLLT--NNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHcCCCEEEECC--CCHHHHHHHhhCCCEEEEEec
Confidence 344888887765 466666677899999887764
No 256
>PF11633 SUD-M: Single-stranded poly(A) binding domain; InterPro: IPR024375 This domain identifies non-structural protein 3 (Nsp3). It is found in human SARS coronavirus polyprotein 1a and 1ab, and in related coronavirus polyproteins [].; PDB: 2KQV_A 2W2G_A 2WCT_D 2JZE_A 2JZF_A 2RNK_A 2JZD_A.
Probab=33.74 E-value=94 Score=18.77 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=24.4
Q ss_pred HHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEee
Q 047740 94 EAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQ 135 (154)
Q Consensus 94 ~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 135 (154)
..+++++++.|.- +.|--++++-.++.++-|+.+..-+.
T Consensus 26 r~ml~~ak~~g~~---~pvc~D~~A~~k~lkr~gv~~~egl~ 64 (142)
T PF11633_consen 26 RAMLQHAKETGLL---CPVCIDYPAFCKTLKRKGVDPKEGLQ 64 (142)
T ss_dssp HHHHHHHHHHT-E---EEEETT-HHHHHHHHHTTS---SEEE
T ss_pred HHHHHHHHhcCcE---EEEEeccHHHHHHHhccCcccccceE
Confidence 5677788887643 33344788999999999988766443
No 257
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=33.69 E-value=76 Score=18.92 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=19.1
Q ss_pred CcEEEEEEccCChhHHHHHH-HcCCeEeeE
Q 047740 105 VLRKTLHVDPLRTPAVNLYK-KFGFQVDTL 133 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~-~~Gf~~~~~ 133 (154)
+..+.+.|. +-.++.+||+ -+||+....
T Consensus 5 l~Hv~i~V~-Dle~s~~FY~~~LG~~~~~~ 33 (144)
T cd07239 5 ISHVVLNSP-DVDKTVAFYEDVLGFRVSDW 33 (144)
T ss_pred eeEEEEECC-CHHHHHHHHHhcCCCEEEEe
Confidence 345556554 3468999995 499997644
No 258
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=33.66 E-value=53 Score=20.82 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=20.7
Q ss_pred CcEEEEEEcc-CChhHHHHHHH-cCCeEeeEe
Q 047740 105 VLRKTLHVDP-LRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 105 ~~~i~~~~~~-~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
++.+.+.|.. +-..++.||++ +||+.....
T Consensus 4 iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~ 35 (191)
T cd07250 4 IDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSF 35 (191)
T ss_pred eeEEEeecChhHHHHHHHHHHHhhCCceeeEE
Confidence 4566666652 22578899965 999987654
No 259
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=33.64 E-value=93 Score=17.56 Aligned_cols=59 Identities=8% Similarity=0.094 Sum_probs=38.1
Q ss_pred CCeEEEEEEEEeCCCceeeEEee----ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHH
Q 047740 59 HGQVVGYVMYAWPTSLSASITKL----NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLY 123 (154)
Q Consensus 59 ~~~ivG~~~~~~~~~~~~~i~~~----~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y 123 (154)
++..-|.+.+..+.+...++..+ .-++.|++..+.+.+.+. ...+...+.++|+. .++|
T Consensus 17 de~y~~~AIvt~~~~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d-----~~~L~Wrsr~~n~~-n~Wy 79 (98)
T cd03173 17 DEPLEGVAIVTYEGNSIPYLDKFAVSDHLWLNNVTDNIFNLIRKD-----FPSLLWRVRENDAN-LKWY 79 (98)
T ss_pred cCCccEEEEEecCCCCCEEEEEEEEcccccccCHHHHHHHHHHhh-----CCeeEEEeCCCCCc-cceE
Confidence 44455555565544455666666 668889998888877554 34788888877653 3444
No 260
>KOG3008 consensus Quinolinate phosphoribosyl transferase [Nucleotide transport and metabolism]
Probab=33.34 E-value=1.5e+02 Score=19.82 Aligned_cols=51 Identities=24% Similarity=0.246 Sum_probs=38.6
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
--|-.||++.- ..+.+.|+..|++.-.+.+... .+..++-+|.+.-.-|-.
T Consensus 110 l~R~SGIATa~-~~~~~aAr~~g~~g~IagTRKT-tPGLRlveKy~~LvGG~~ 160 (300)
T KOG3008|consen 110 LARCSGIATAA-AAAVEAARGAGWTGHIAGTRKT-TPGLRLVEKYGLLVGGAA 160 (300)
T ss_pred HHHhccHHHHH-HHHHHHHhcCCCcceecccccC-Ccchhhhhhhceeecccc
Confidence 56888999864 4566778878888888888766 678889999997665543
No 261
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=33.29 E-value=1e+02 Score=22.36 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCe
Q 047740 90 EALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQ 129 (154)
Q Consensus 90 ~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~ 129 (154)
+.+...+++.|.+.|++.+.++|+..-..-+.--.+.||.
T Consensus 134 r~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~ 173 (381)
T PRK11197 134 RGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMS 173 (381)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCC
Confidence 3566777788888899999999985422223333455654
No 262
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=32.86 E-value=62 Score=17.70 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=11.3
Q ss_pred eEEEEEECCeEEEEEEE
Q 047740 52 GLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 52 ~~~~~~~~~~ivG~~~~ 68 (154)
...+..++++++|++..
T Consensus 91 ~l~Vv~~~~~~~Gvvs~ 107 (113)
T cd04587 91 HLPVVDKSGQVVGLLDV 107 (113)
T ss_pred cccEECCCCCEEEEEEH
Confidence 34444446899999875
No 263
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=32.78 E-value=95 Score=17.40 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=11.7
Q ss_pred ceEEEEEECCeEEEEEEE
Q 047740 51 SGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 51 ~~~~~~~~~~~ivG~~~~ 68 (154)
..+.+..++|+++|.+..
T Consensus 90 ~~lpVvd~~~~l~Givt~ 107 (113)
T cd04597 90 RTLPVVDDDGTPAGIITL 107 (113)
T ss_pred CEEEEECCCCeEEEEEEH
Confidence 334444446899999875
No 264
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=32.72 E-value=67 Score=18.06 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=15.9
Q ss_pred CChhHHHHHH-HcCCeEeeEe
Q 047740 115 LRTPAVNLYK-KFGFQVDTLI 134 (154)
Q Consensus 115 ~n~~a~~~y~-~~Gf~~~~~~ 134 (154)
+=.+|..||+ .+||+.....
T Consensus 9 d~~~a~~FY~~~lG~~~~~~~ 29 (122)
T cd08355 9 DAAAAIDWLTDAFGFEERLVV 29 (122)
T ss_pred CHHHHHHHHHHhcCCEEEEEE
Confidence 4468999998 8999987654
No 265
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=32.53 E-value=1.8e+02 Score=20.56 Aligned_cols=44 Identities=7% Similarity=-0.024 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeeec
Q 047740 91 ALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQGY 137 (154)
Q Consensus 91 ~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~~ 137 (154)
+++..++-.|+..|++...+.+.-+|. -|...++|-.-.-..+|
T Consensus 375 e~v~Da~ilak~~~~DVFNalt~~dN~---lFL~dLkFg~GdGflny 418 (451)
T COG5092 375 EMVGDAMILAKVEGCDVFNALTMMDNS---LFLADLKFGCGDGFLNY 418 (451)
T ss_pred HHHHHHHHHHHHcCCchhhhhhhccch---hHHHhcCccCCCceeEE
Confidence 445555556666677766666555663 37788888775444344
No 266
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=32.52 E-value=1.5e+02 Score=22.60 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeE
Q 047740 89 GEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTL 133 (154)
Q Consensus 89 g~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~ 133 (154)
-.+++.+..+.|..+|...+...|.+. ..++|..+|++....
T Consensus 271 ~~eli~~F~e~A~~~G~r~~fy~vs~~---~~p~y~d~Gl~~~kl 312 (538)
T COG2898 271 WPELIWAFLELADRHGWRPVFYGVSEE---GAPLYADAGLRALKL 312 (538)
T ss_pred hHHHHHHHHHHHHhcCCeeEEEEeCcc---ccHHHHhcCcceeec
Confidence 568999999999999999999999876 578999999987653
No 267
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=32.31 E-value=90 Score=16.96 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=12.6
Q ss_pred CCceEEEEEECCeEEEEEEE
Q 047740 49 KNSGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 49 ~~~~~~~~~~~~~ivG~~~~ 68 (154)
......+..++|+++|++..
T Consensus 83 ~~~~~~Vv~~~~~~~G~it~ 102 (108)
T cd04596 83 GIEMLPVVDDNKKLLGIISR 102 (108)
T ss_pred CCCeeeEEcCCCCEEEEEEH
Confidence 33444444457899999865
No 268
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=32.19 E-value=1.4e+02 Score=19.58 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=28.3
Q ss_pred ccHHHHHH-HHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeE
Q 047740 86 QGRGEALL-EAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQV 130 (154)
Q Consensus 86 ~Gig~~ll-~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~ 130 (154)
.|.|+..+ .+++....+.|...+++.....-...++...++||..
T Consensus 33 ~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~ 78 (230)
T PRK08533 33 ESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDI 78 (230)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCch
Confidence 36677666 3444434455777777776655555677778888844
No 269
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=32.05 E-value=82 Score=22.51 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=16.4
Q ss_pred ccccccHHHHHHHHHHHH
Q 047740 82 NYRGQGRGEALLEAAIKK 99 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~ 99 (154)
...|.|+|.+.++++++.
T Consensus 221 As~G~GLG~~FLrHIERt 238 (369)
T COG0536 221 ASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccCCCccHHHHHHHHhh
Confidence 999999999999999764
No 270
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=31.92 E-value=91 Score=18.08 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=19.2
Q ss_pred cEEEEEEccCChhHHHHHHH-cCCeEeeE
Q 047740 106 LRKTLHVDPLRTPAVNLYKK-FGFQVDTL 133 (154)
Q Consensus 106 ~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~ 133 (154)
..+.+.|. +-.+++.||++ +||+....
T Consensus 2 ~HV~l~V~-Dl~~a~~FY~~~LG~~~~~~ 29 (131)
T cd08363 2 NHMTFSVS-NLDKSISFYKHVFMEKLLVL 29 (131)
T ss_pred ceEEEEEC-CHHHHHHHHHHhhCCEEecc
Confidence 35666664 44689999987 79987654
No 271
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=31.78 E-value=98 Score=17.25 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=11.6
Q ss_pred ceEEEEEECCeEEEEEEE
Q 047740 51 SGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 51 ~~~~~~~~~~~ivG~~~~ 68 (154)
....+..++|+++|++..
T Consensus 97 ~~l~Vvd~~~~~~Givt~ 114 (120)
T cd04641 97 HRLVVVDENKRVEGIISL 114 (120)
T ss_pred cEEEEECCCCCEEEEEEH
Confidence 344444445899999875
No 272
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=31.55 E-value=94 Score=16.93 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=12.0
Q ss_pred ceEEEEEECCeEEEEEEE
Q 047740 51 SGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 51 ~~~~~~~~~~~ivG~~~~ 68 (154)
....+...+++++|++..
T Consensus 91 ~~~~Vv~~~~~~iG~it~ 108 (114)
T cd04604 91 TALPVVDDNGRPVGVLHI 108 (114)
T ss_pred CEEEEECCCCCEEEEEEH
Confidence 344444447899999865
No 273
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=31.49 E-value=1.1e+02 Score=21.28 Aligned_cols=47 Identities=11% Similarity=0.036 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeee
Q 047740 90 EALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQG 136 (154)
Q Consensus 90 ~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~ 136 (154)
-.+++.+++.|.+.|...-.+.-...++....++..+|.......+.
T Consensus 234 l~li~~vi~~a~~~g~~vsvCGe~a~~p~~~~~Ll~lGi~~lSv~p~ 280 (293)
T PF02896_consen 234 LRLIKQVIDAAHKAGKPVSVCGEMASDPEAIPLLLGLGIRSLSVSPD 280 (293)
T ss_dssp HHHHHHHHHHHHHTT-EEEEESGGGGSHHHHHHHHHHT-SEEEE-GG
T ss_pred HHHHHHHHHHHhhcCcEEEEecCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 46788888888888866555555667899999999999988775543
No 274
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=31.35 E-value=53 Score=14.04 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=10.6
Q ss_pred eEEEEEECCeEEEEEEE
Q 047740 52 GLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 52 ~~~~~~~~~~ivG~~~~ 68 (154)
.+++...+++++|++..
T Consensus 25 ~~~v~~~~~~~~g~i~~ 41 (49)
T smart00116 25 RLPVVDEEGRLVGIVTR 41 (49)
T ss_pred cccEECCCCeEEEEEEH
Confidence 33444445788998764
No 275
>PRK09781 hypothetical protein; Provisional
Probab=31.25 E-value=55 Score=19.76 Aligned_cols=37 Identities=5% Similarity=-0.002 Sum_probs=27.6
Q ss_pred eCCCceeeEEee--ccccccHHHHHHHHHHHHHHHc-CCc
Q 047740 70 WPTSLSASITKL--NYRGQGRGEALLEAAIKKCRTR-TVL 106 (154)
Q Consensus 70 ~~~~~~~~i~~~--~~rg~Gig~~ll~~~~~~~~~~-g~~ 106 (154)
+.++....|... .++.+||-.+|++++++...+. |+.
T Consensus 15 P~sG~DI~IA~~~St~W~~~IV~~LINQvLdege~f~ga~ 54 (181)
T PRK09781 15 PASGADIRIARRESTSWHKDIVAELINQVLRCGAALIIIA 54 (181)
T ss_pred CCCCceeEEEecccccchHHHHHHHHHHHHhhhhhhhhHH
Confidence 344555666666 9999999999999998877665 544
No 276
>PF04796 RepA_C: Plasmid encoded RepA protein; InterPro: IPR006881 This is a family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood [].
Probab=30.37 E-value=1.2e+02 Score=18.86 Aligned_cols=40 Identities=8% Similarity=0.069 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEee
Q 047740 88 RGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 88 ig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
+++-++..+...|...+-..|.+. ..+..|.+++|+...|
T Consensus 6 ~pRLiL~~l~TeAvrt~sr~I~lG-----~S~~~flr~lG~~~tG 45 (161)
T PF04796_consen 6 YPRLILAWLCTEAVRTKSREIELG-----RSLSEFLRRLGLSPTG 45 (161)
T ss_pred hhHHHHHHHHHHHhccCCceEeec-----cCHHHHHHHhCCCCCC
Confidence 567889999999998887777775 4567899999998855
No 277
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=30.24 E-value=86 Score=21.37 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=20.4
Q ss_pred CcEEEEEEccCChhHHHHHHH-cCCeEeeEe
Q 047740 105 VLRKTLHVDPLRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
+..+.+.|.. =.++++||++ +||+...+.
T Consensus 5 i~Hi~l~V~D-le~s~~FY~~~LG~~~~~~~ 34 (303)
T TIGR03211 5 LGHVELRVLD-LEESLKHYTDVLGLEETGRD 34 (303)
T ss_pred eeEEEEEeCC-HHHHHHHHHHhcCCEEeeec
Confidence 3456666643 3689999986 999987543
No 278
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=30.23 E-value=97 Score=16.69 Aligned_cols=18 Identities=17% Similarity=0.312 Sum_probs=11.5
Q ss_pred ceEEEEEECCeEEEEEEE
Q 047740 51 SGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 51 ~~~~~~~~~~~ivG~~~~ 68 (154)
....+..++|+++|++..
T Consensus 86 ~~~~vv~~~g~~~Gvit~ 103 (109)
T cd04583 86 KYVPVVDEDGKLVGLITR 103 (109)
T ss_pred ceeeEECCCCeEEEEEeh
Confidence 334444446899998865
No 279
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=30.22 E-value=1.5e+02 Score=18.75 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHHHHHcCCcEEEEEEccCChhH---HHHHHHcCCeEeeEeee
Q 047740 87 GRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPA---VNLYKKFGFQVDTLIQG 136 (154)
Q Consensus 87 Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a---~~~y~~~Gf~~~~~~~~ 136 (154)
-+|..+++.+.+...+.|+.-..=+|..-|.+- ....++.||+++...+.
T Consensus 43 eva~ai~~~l~~~~~~~gi~LA~QcCEHlNRALvvEr~~a~~~~le~V~VvP~ 95 (172)
T PF04260_consen 43 EVAEAIFEALLEVLKERGIYLAFQCCEHLNRALVVEREVAEKYGLEEVTVVPV 95 (172)
T ss_dssp HHHHHHHHHHHHHHHTTT-EEEEE--GGGTT-EEEEHHHHHHHT--EEE-B-B
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEchhhhhHHHHhhHHHHhHcCCceEEEEcc
Confidence 578899999999999999876666677667553 57888999999887654
No 280
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=30.12 E-value=97 Score=16.65 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=11.9
Q ss_pred ceEEEEEECCeEEEEEEE
Q 047740 51 SGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 51 ~~~~~~~~~~~ivG~~~~ 68 (154)
....+..++|+++|++..
T Consensus 84 ~~~~Vv~~~g~~~Gvi~~ 101 (107)
T cd04610 84 SKLPVVDENNNLVGIITN 101 (107)
T ss_pred CeEeEECCCCeEEEEEEH
Confidence 334444456899999865
No 281
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=30.10 E-value=1.1e+02 Score=20.27 Aligned_cols=34 Identities=21% Similarity=0.130 Sum_probs=28.6
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccC
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPL 115 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~ 115 (154)
...|+--|..-+..++++|.+.|++.+.+.+.+.
T Consensus 21 ~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFSt 54 (226)
T TIGR00055 21 RAYGHKAGVKSLRRILRWCANLGVECLTLYAFST 54 (226)
T ss_pred hhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeeh
Confidence 4557788999999999999999999998886543
No 282
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=30.02 E-value=1.9e+02 Score=20.69 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=22.9
Q ss_pred HHHHHHHcC--Cc-EEEEEEccCChhHHHHHHHcCCeEe
Q 047740 96 AIKKCRTRT--VL-RKTLHVDPLRTPAVNLYKKFGFQVD 131 (154)
Q Consensus 96 ~~~~~~~~g--~~-~i~~~~~~~n~~a~~~y~~~Gf~~~ 131 (154)
++..+++.+ +. .+...+...|..+.+||.++|.+.+
T Consensus 103 ~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rv 141 (347)
T COG0826 103 LIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRV 141 (347)
T ss_pred HHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEE
Confidence 344555554 22 2333466778999999999996543
No 283
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=29.84 E-value=97 Score=20.38 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=25.6
Q ss_pred ccccHHHHHHHHHHHHHHHcCCcEEEEEEcc
Q 047740 84 RGQGRGEALLEAAIKKCRTRTVLRKTLHVDP 114 (154)
Q Consensus 84 rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 114 (154)
.|..-|..-+..+.++|.+.|++.+.+.+.+
T Consensus 18 ~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS 48 (223)
T PF01255_consen 18 EGHRAGAEKLKEIVEWCLELGIKYLTVYAFS 48 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-SEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 4666788899999999999999999998765
No 284
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=29.80 E-value=1e+02 Score=16.86 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=11.8
Q ss_pred ceEEEEEECCeEEEEEEE
Q 047740 51 SGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 51 ~~~~~~~~~~~ivG~~~~ 68 (154)
....+..++|+++|++..
T Consensus 90 ~~~~Vv~~~~~~~Gvit~ 107 (113)
T cd04607 90 RHLPILDEEGRVVGLATL 107 (113)
T ss_pred CEEEEECCCCCEEEEEEh
Confidence 334444457899999875
No 285
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=29.72 E-value=57 Score=19.54 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHHHHHHcCCcEEE
Q 047740 87 GRGEALLEAAIKKCRTRTVLRKT 109 (154)
Q Consensus 87 Gig~~ll~~~~~~~~~~g~~~i~ 109 (154)
+++..+++.+.+.|+++|.+++.
T Consensus 5 si~~~i~~~v~~~A~~~g~~~V~ 27 (135)
T PRK03824 5 ALAEAIVRTVIDYAQKEGASKVK 27 (135)
T ss_pred HHHHHHHHHHHHHHHHcCCchhH
Confidence 57888889999888888665443
No 286
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.69 E-value=1.1e+02 Score=20.33 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=28.8
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccC
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPL 115 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~ 115 (154)
...|+--|..-+..++++|.+.|++.+.+.+.+.
T Consensus 28 ~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~ 61 (230)
T PRK14837 28 FFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFST 61 (230)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeeh
Confidence 4567778999999999999999999998886543
No 287
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=29.38 E-value=3.3e+02 Score=22.57 Aligned_cols=66 Identities=15% Similarity=0.229 Sum_probs=39.5
Q ss_pred cCCceEEEEEECCeEEEEEEEEeCCCceeeEEeeccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcC
Q 047740 48 KKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKLNYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFG 127 (154)
Q Consensus 48 ~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~G 127 (154)
..+...+++..+|+++|...+...-... ....+...+.+|++.+.+ +..++.+|.+..+..|
T Consensus 700 ~~g~tvv~v~vn~~l~gv~~l~D~vr~~-----------------a~~av~~Lk~~Gi~v~mL-TGDn~~aA~svA~~VG 761 (951)
T KOG0207|consen 700 RKGQTVVYVAVNGQLVGVFALEDQVRPD-----------------AALAVAELKSMGIKVVML-TGDNDAAARSVAQQVG 761 (951)
T ss_pred hcCceEEEEEECCEEEEEEEeccccchh-----------------HHHHHHHHHhcCceEEEE-cCCCHHHHHHHHHhhC
Confidence 3456666667799999999885321111 134455566667554433 4445556777777777
Q ss_pred CeEe
Q 047740 128 FQVD 131 (154)
Q Consensus 128 f~~~ 131 (154)
+..+
T Consensus 762 i~~V 765 (951)
T KOG0207|consen 762 IDNV 765 (951)
T ss_pred cceE
Confidence 5443
No 288
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=29.21 E-value=1.2e+02 Score=19.08 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=11.1
Q ss_pred EEEEEECCeEEEEEE
Q 047740 53 LLYIQIHGQVVGYVM 67 (154)
Q Consensus 53 ~~~~~~~~~ivG~~~ 67 (154)
.+++.++|++||.+.
T Consensus 161 AVlV~e~G~~vGIIT 175 (187)
T COG3620 161 AVLVVENGKVVGIIT 175 (187)
T ss_pred eEEEEeCCceEEEEe
Confidence 344448999999875
No 289
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=29.19 E-value=2.2e+02 Score=20.57 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=37.1
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEee
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQ 135 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 135 (154)
......+...|++.+.+.+.+.|+..+-+.-. + +.-....+..||......+
T Consensus 111 ~~~~~~~~~~L~~~~~~~a~~~~~Ss~h~lF~-~-~~~~~~l~~~G~~~r~~~q 162 (370)
T PF04339_consen 111 GADRAALRAALLQALEQLAEENGLSSWHILFP-D-EEDAAALEEAGFLSRQGVQ 162 (370)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCcceeecC-C-HHHHHHHHhCCCceecCCc
Confidence 34456778899999999999998877765422 2 3445677889998765443
No 290
>PF02334 RTP: Replication terminator protein; InterPro: IPR003432 The bacterial replication terminator protein (RTP) plays a role in the termination of DNA replication by impeding replication fork movement. Two RTP dimers bind to the two inverted repeat regions at the termination site.; GO: 0003677 DNA binding, 0006274 DNA replication termination; PDB: 2DPU_A 2DPD_A 1F4K_A 1J0R_B 2EFW_F 2DQR_B 1BM9_B.
Probab=29.17 E-value=18 Score=20.88 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=18.4
Q ss_pred ccccccHHHHHHHHHHHHHHHcCC
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTV 105 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~ 105 (154)
-.+++|+|.++++.+-+..+..|+
T Consensus 27 ~e~~r~Yg~q~Ld~lr~EFk~~Gy 50 (122)
T PF02334_consen 27 VEQERGYGLQLLDELRSEFKPLGY 50 (122)
T ss_dssp HHTT-EBCTCHHHHHHHHHTTTT-
T ss_pred hhcccchHHHHHHHHHHHhhhcCC
Confidence 458889999999999888877774
No 291
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=29.07 E-value=1.1e+02 Score=17.03 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=17.1
Q ss_pred EEEEEccCChhHHHHHH-HcCCeEeeE
Q 047740 108 KTLHVDPLRTPAVNLYK-KFGFQVDTL 133 (154)
Q Consensus 108 i~~~~~~~n~~a~~~y~-~~Gf~~~~~ 133 (154)
+.+.|. +-..++.||+ -+||+....
T Consensus 4 ~~l~v~-d~~~s~~Fy~~~lG~~~~~~ 29 (122)
T cd08354 4 TALYVD-DLEAAEAFYEDVLGLELMLK 29 (122)
T ss_pred EEEEeC-CHHHHHHHHHhccCCEEeec
Confidence 444443 3357999997 489998763
No 292
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=28.84 E-value=56 Score=13.75 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=6.0
Q ss_pred cHHHHHHHHHHH
Q 047740 87 GRGEALLEAAIK 98 (154)
Q Consensus 87 Gig~~ll~~~~~ 98 (154)
|+|....+.+++
T Consensus 18 GIG~~tA~~I~~ 29 (30)
T PF00633_consen 18 GIGPKTANAILS 29 (30)
T ss_dssp T-SHHHHHHHHH
T ss_pred CcCHHHHHHHHh
Confidence 566655555543
No 293
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=28.67 E-value=1.2e+02 Score=17.06 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=11.5
Q ss_pred ceEEEEEECCeEEEEEEE
Q 047740 51 SGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 51 ~~~~~~~~~~~ivG~~~~ 68 (154)
....+..++++++|.+..
T Consensus 100 ~~lpVvd~~~~~vGiit~ 117 (123)
T cd04627 100 SSVAVVDNQGNLIGNISV 117 (123)
T ss_pred ceEEEECCCCcEEEEEeH
Confidence 334444346899999875
No 294
>COG4904 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.47 E-value=41 Score=20.54 Aligned_cols=16 Identities=19% Similarity=0.603 Sum_probs=12.6
Q ss_pred hhHHHHHHHcCCeEee
Q 047740 117 TPAVNLYKKFGFQVDT 132 (154)
Q Consensus 117 ~~a~~~y~~~Gf~~~~ 132 (154)
.....||++.||+...
T Consensus 70 k~~~~FYEnyGf~A~e 85 (174)
T COG4904 70 KTVEAFYENYGFSAGE 85 (174)
T ss_pred HHHHHHHHHcCCCcCC
Confidence 3467899999998764
No 295
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=28.40 E-value=1.4e+02 Score=21.53 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCe
Q 047740 90 EALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQ 129 (154)
Q Consensus 90 ~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~ 129 (154)
+.+.+.+++.|.+.|++.+.++|+..-..-+.-=.++||.
T Consensus 134 r~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~ 173 (367)
T PLN02493 134 RNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFT 173 (367)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCC
Confidence 3566777778888899999999886543323222345553
No 296
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.23 E-value=1.1e+02 Score=20.33 Aligned_cols=33 Identities=15% Similarity=0.044 Sum_probs=27.2
Q ss_pred cccccHHHHHHHHHHHHHHHcCCcEEEEEEccC
Q 047740 83 YRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPL 115 (154)
Q Consensus 83 ~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~ 115 (154)
..|+--|..-+..++++|.+.|++.+.+.+.+.
T Consensus 16 ~~GH~~G~~~l~~i~~~c~~~GI~~lT~yaFS~ 48 (229)
T PRK10240 16 AFGHKAGAKSVRRAVSFAANNGIEALTLYAFSS 48 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeeeh
Confidence 346667889999999999999999998886643
No 297
>PRK08815 GTP cyclohydrolase; Provisional
Probab=27.93 E-value=1.8e+02 Score=21.06 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=31.3
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEee
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQ 135 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 135 (154)
++|.=|+|.++++. .|++++.+-++ |+.-..-.+.+|.+.++..+
T Consensus 297 D~RdygigAQIL~d-------LGV~kirLLTn--np~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 297 DERRYGSAVAMLRG-------LGITRVRLLTN--NPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred cceeeeHHHHHHHH-------cCCCeEEECCC--CHHHHHHHHhCCCEEEEEec
Confidence 56666666666554 48888887754 55556667799999887764
No 298
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=27.87 E-value=1.2e+02 Score=16.84 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEc
Q 047740 91 ALLEAAIKKCRTRTVLRKTLHVD 113 (154)
Q Consensus 91 ~ll~~~~~~~~~~g~~~i~~~~~ 113 (154)
++++.+.+.+.+.|+.++...+.
T Consensus 51 ~~i~~~~e~~~~~G~~Rv~t~ik 73 (92)
T PF01910_consen 51 ALIKEAHEALFEAGAKRVVTVIK 73 (92)
T ss_dssp HHHHHHHHHHHCTTSSEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEE
Confidence 56777788888888888887654
No 299
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=27.76 E-value=1.4e+02 Score=17.80 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=22.6
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEE
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKT 109 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~ 109 (154)
..+..|+.+-|+..+++.|.+.|++.+.
T Consensus 35 ~~~hp~L~~Dllge~v~a~h~~Girv~a 62 (132)
T PF14871_consen 35 GPRHPGLKRDLLGEQVEACHERGIRVPA 62 (132)
T ss_pred CcCCCCCCcCHHHHHHHHHHHCCCEEEE
Confidence 3456777789999999999999987543
No 300
>PRK00756 acyltransferase NodA; Provisional
Probab=27.61 E-value=1.7e+02 Score=18.57 Aligned_cols=130 Identities=11% Similarity=0.021 Sum_probs=68.4
Q ss_pred hhHHHHHHHhhhhCCCcHHH-HHHH---HHHhhcCCceEEEEEECCeEEEEEEEEe----CCCc---eeeEEee----cc
Q 047740 19 FVVDEIVKMEKKIFPKHESL-ARSF---DEDLKKKNSGLLYIQIHGQVVGYVMYAW----PTSL---SASITKL----NY 83 (154)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~ivG~~~~~~----~~~~---~~~i~~~----~~ 83 (154)
.|-.++.++....|...-.+ .+-+ ..+....+....++++..-+++.+.+.. -... .++++.. +.
T Consensus 18 adH~eLaeFfr~tYgptGafnakpFeG~RSWAGARPElRaIgyD~~GVaAH~G~LRRFIkVg~vDlLVaElGLygVRpDL 97 (196)
T PRK00756 18 SDHAELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPELRAIAYDSHGVAAHMGLLRRFIKVGEVDLLVAELGLYGVRPDL 97 (196)
T ss_pred chhHHHHHHHHHhcCCcccccccccCcCcccccCCceeEEEeecCccHhHhHHHHhhhheecccceeEEEeeeeeecccc
Confidence 35556666666666432211 1111 1122223444566666555555544321 1111 2333333 89
Q ss_pred ccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHH---HcCCeE-------eeEeeecccCC-----CceEEEE
Q 047740 84 RGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYK---KFGFQV-------DTLIQGYYSAD-----RPAYRMY 148 (154)
Q Consensus 84 rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~---~~Gf~~-------~~~~~~~~~~~-----~~~~~m~ 148 (154)
.|.||+..+ ..+.-..++.|+..-+.+|.+. ..+-.+ +.|... -.+.++.+.+- +|..++.
T Consensus 98 EGlGi~~S~-r~m~PvLq~LgVPF~FGtVR~a---l~~Hv~R~~r~g~~ti~~gvrVRSTl~~v~~dlpptr~ed~lv~V 173 (196)
T PRK00756 98 EGLGIAHSI-RAMYPVLQELGVPFAFGTVRHA---LRNHVERLCRNGLATIVTGVRVRSTLPDVYLDLPPTRTEDVLVVV 173 (196)
T ss_pred ccccchhhH-HHHHHHHHhcCCCeecccchHH---HHHHHHHHhccCcceecccceeeccCccccCCCCCccccccEEEE
Confidence 999999877 6777888888998888877643 444444 444432 22333333321 3677777
Q ss_pred eecC
Q 047740 149 IDFD 152 (154)
Q Consensus 149 ~~l~ 152 (154)
.++.
T Consensus 174 ~Pi~ 177 (196)
T PRK00756 174 FPIG 177 (196)
T ss_pred EeCC
Confidence 6654
No 301
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=27.57 E-value=1.7e+02 Score=19.06 Aligned_cols=20 Identities=10% Similarity=0.237 Sum_probs=13.5
Q ss_pred EccCChhHHHHHHHcCCeEe
Q 047740 112 VDPLRTPAVNLYKKFGFQVD 131 (154)
Q Consensus 112 ~~~~n~~a~~~y~~~Gf~~~ 131 (154)
+...|..+.++|+..|+..+
T Consensus 45 ~nv~N~~s~~~~~~~G~~~i 64 (233)
T PF01136_consen 45 LNVFNSESARFLKELGASRI 64 (233)
T ss_pred ccCCCHHHHHHHHHcCCCEE
Confidence 44557777777777777644
No 302
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=27.52 E-value=1.2e+02 Score=21.42 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=28.4
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEcc
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDP 114 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 114 (154)
...|+-.|.+.+..++++|.+.|++.+.+...+
T Consensus 41 ~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFS 73 (322)
T PTZ00349 41 SAIGHFMGSKALIQIIEICIKLKIKILSVFSFS 73 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 445888899999999999999999999888653
No 303
>PF13289 SIR2_2: SIR2-like domain
Probab=27.50 E-value=1.3e+02 Score=17.46 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=9.1
Q ss_pred hhHHHHHHHcCCeE
Q 047740 117 TPAVNLYKKFGFQV 130 (154)
Q Consensus 117 ~~a~~~y~~~Gf~~ 130 (154)
.....++++.|.++
T Consensus 129 ~~~~~~~~~~~i~~ 142 (143)
T PF13289_consen 129 ENEREFLEKYGIEV 142 (143)
T ss_pred HHHHHHHHHcCCEE
Confidence 55666777777654
No 304
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=27.49 E-value=2e+02 Score=19.36 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEccC--ChhHHHHHHHcCCeEeeEeeeccc
Q 047740 89 GEALLEAAIKKCRTRTVLRKTLHVDPL--RTPAVNLYKKFGFQVDTLIQGYYS 139 (154)
Q Consensus 89 g~~ll~~~~~~~~~~g~~~i~~~~~~~--n~~a~~~y~~~Gf~~~~~~~~~~~ 139 (154)
|..|+..+++.+.+.|.+...+...+. ...+.++=++.|-...+....|+.
T Consensus 90 G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~ 142 (243)
T PRK03692 90 GADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFT 142 (243)
T ss_pred hHHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCC
Confidence 889999999999888866555554433 123444445557777777777764
No 305
>TIGR00667 aat leucyl/phenylalanyl-tRNA--protein transferase. The N-terminal residue controls the biological half-life of many proteins via the N-end rule pathway. This enzyme transfers a Leu or Phe to the amino end of certain proteins to enable degradation.
Probab=27.48 E-value=1.7e+02 Score=18.76 Aligned_cols=87 Identities=7% Similarity=-0.115 Sum_probs=57.2
Q ss_pred HHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCCCceeeEEee-ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCCh
Q 047740 39 ARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKL-NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRT 117 (154)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~-~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~ 117 (154)
.+.+.........+.+=+++++++||-.....-.. ...+.- -.|...-++..+-++.+.+++.|..-+-+.+...
T Consensus 86 ~~aY~~LH~~G~AHSvEvw~~~~LvGGlYGv~iG~--~F~GESMFs~~~nASKvAl~~L~~~L~~~g~~liDcQ~~t~-- 161 (185)
T TIGR00667 86 VEAYHRLHELGHAHSFEVWQGDELVGGMYGIAQGG--LFCGESMFSRMTNASKTALLVFCEHFIRHGGQLIDCQVQNP-- 161 (185)
T ss_pred HHHHHHHHHhCceEEEEEEECCEEEEeeeeeeeCC--eEEeccccccCCChhHHHHHHHHHHHHHCCCcEEEECCCCH--
Confidence 34444444555667777788999999876542222 233333 5677788889999999999999988555544333
Q ss_pred hHHHHHHHcCCeEeeE
Q 047740 118 PAVNLYKKFGFQVDTL 133 (154)
Q Consensus 118 ~a~~~y~~~Gf~~~~~ 133 (154)
-..++|-+.+.+
T Consensus 162 ----HL~slGa~ei~R 173 (185)
T TIGR00667 162 ----HLASLGAYEVPR 173 (185)
T ss_pred ----HHHhcCCEEcCH
Confidence 336778777654
No 306
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=27.33 E-value=1.1e+02 Score=19.68 Aligned_cols=26 Identities=8% Similarity=-0.037 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEccC
Q 047740 90 EALLEAAIKKCRTRTVLRKTLHVDPL 115 (154)
Q Consensus 90 ~~ll~~~~~~~~~~g~~~i~~~~~~~ 115 (154)
+-+++..++.+.+.|++.+.+.+...
T Consensus 31 ~piI~~~l~~l~~~Gi~~I~iv~~~~ 56 (217)
T cd04197 31 VPLIDYTLEFLALNGVEEVFVFCCSH 56 (217)
T ss_pred EehHHHHHHHHHHCCCCeEEEEeCCC
Confidence 46888888888888999988887754
No 307
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=27.23 E-value=1.3e+02 Score=19.86 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=28.0
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEcc
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDP 114 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 114 (154)
...|.--|..-+..++++|.+.|++.+.+.+.+
T Consensus 22 ~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS 54 (221)
T cd00475 22 RIEGHKAGAEKLRDILRWCLELGVKEVTLYAFS 54 (221)
T ss_pred hhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 445777899999999999999999999888653
No 308
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=26.79 E-value=99 Score=16.94 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=16.5
Q ss_pred EEEEccCChhHHHHHHH-cCCeEeeE
Q 047740 109 TLHVDPLRTPAVNLYKK-FGFQVDTL 133 (154)
Q Consensus 109 ~~~~~~~n~~a~~~y~~-~Gf~~~~~ 133 (154)
.+.|. +=.++++||++ +||+....
T Consensus 3 ~l~v~-d~~~s~~Fy~~~lg~~~~~~ 27 (113)
T cd08345 3 TLIVK-DLNKSIAFYRDILGAELIYS 27 (113)
T ss_pred eEEEC-CHHHHHHHHHHhcCCeeeec
Confidence 34443 33679999987 99987654
No 309
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.77 E-value=1.2e+02 Score=20.39 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=28.4
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEc
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVD 113 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~ 113 (154)
...|.--|...+..++++|.+.|++.+.+.+.
T Consensus 36 ~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaF 67 (243)
T PRK14829 36 RTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTF 67 (243)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCCEEEEeee
Confidence 55677889999999999999999999998876
No 310
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=26.68 E-value=1.2e+02 Score=16.54 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=11.8
Q ss_pred ceEEEEEECCeEEEEEEE
Q 047740 51 SGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 51 ~~~~~~~~~~~ivG~~~~ 68 (154)
....+..++|+++|++..
T Consensus 90 ~~~~Vvd~~g~~~Gvvt~ 107 (113)
T cd04615 90 SRLPVLDDKGKVGGIVTE 107 (113)
T ss_pred CeeeEECCCCeEEEEEEH
Confidence 344444456899999865
No 311
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=26.65 E-value=1.8e+02 Score=21.01 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCC
Q 047740 91 ALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGF 128 (154)
Q Consensus 91 ~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf 128 (154)
.+...+++.|.+.|++.+.++|+..-..-+.-=.+.||
T Consensus 146 ~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~ 183 (367)
T TIGR02708 146 GINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGF 183 (367)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCC
Confidence 45667777888889999999997543332333334444
No 312
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.64 E-value=1.4e+02 Score=19.99 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=28.7
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccC
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPL 115 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~ 115 (154)
...|.--|..-+..++++|.+.|++.+.+.+.+.
T Consensus 25 ~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~ 58 (233)
T PRK14841 25 RIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFST 58 (233)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeH
Confidence 4557778999999999999999999998886643
No 313
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=26.43 E-value=2.4e+02 Score=20.00 Aligned_cols=85 Identities=7% Similarity=0.090 Sum_probs=49.9
Q ss_pred hHHHHHHHhhhhCCCcH------HHHHHHHHHhhcCC----ceEEEEEE--CCeEEEEEEEEeCC-------CceeeEEe
Q 047740 20 VVDEIVKMEKKIFPKHE------SLARSFDEDLKKKN----SGLLYIQI--HGQVVGYVMYAWPT-------SLSASITK 80 (154)
Q Consensus 20 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----~~~~~~~~--~~~ivG~~~~~~~~-------~~~~~i~~ 80 (154)
.++++..+..+.+..+. .....+.++...++ ..++++.. ..++|||+...+.. ....++..
T Consensus 91 ql~dv~~lL~eNYVED~~ag~rf~Y~~EFl~Wal~~pg~kK~whigvRvk~t~klVaFIsa~p~~v~vRgK~~~~~evNF 170 (451)
T COG5092 91 QLEDVFVLLEENYVEDIYAGHRFRYSVEFLQWALDGPGGKKRWHIGVRVKGTQKLVAFISAKPHLVSVRGKRSSVLEVNF 170 (451)
T ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhcCCCCceeeEEEEEEcccceeEEEEecceeEEEEcccccccceEEE
Confidence 45555555555443221 12345555554442 23344443 45999999765211 12334443
Q ss_pred e----ccccccHHHHHHHHHHHHHHHcC
Q 047740 81 L----NYRGQGRGEALLEAAIKKCRTRT 104 (154)
Q Consensus 81 ~----~~rg~Gig~~ll~~~~~~~~~~g 104 (154)
+ +.|++.+.--|++++-..|...|
T Consensus 171 LCihk~lRsKRltPvLIkEiTRR~n~~~ 198 (451)
T COG5092 171 LCIHKELRSKRLTPVLIKEITRRANVDG 198 (451)
T ss_pred EEEehhhhhCccchHHHHHHHHhhhhhh
Confidence 3 99999999999999998887654
No 314
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=26.42 E-value=1.1e+02 Score=16.78 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=17.3
Q ss_pred EEEEEEccCChhHHHHHHH-cCCeEeeEe
Q 047740 107 RKTLHVDPLRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 107 ~i~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
.+.+.|.. =..+..||.. +||+.....
T Consensus 3 hi~l~v~d-~~~s~~FY~~~lG~~~~~~~ 30 (114)
T cd07247 3 WFELPTTD-PERAKAFYGAVFGWTFEDMG 30 (114)
T ss_pred EEEeeCCC-HHHHHHHHHhccCceeeecc
Confidence 34444432 3578999986 699876543
No 315
>PRK13690 hypothetical protein; Provisional
Probab=26.41 E-value=1.8e+02 Score=18.57 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhH---HHHHHHcCCeEeeEeee
Q 047740 86 QGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPA---VNLYKKFGFQVDTLIQG 136 (154)
Q Consensus 86 ~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a---~~~y~~~Gf~~~~~~~~ 136 (154)
.-+|..+++.+.+...+.|+.-..=.|..-|.+- ....++.||+.+...+.
T Consensus 49 ~eva~~i~~~l~~~~~~~gi~LA~QcCEHLNRALvvEr~~a~~~~le~V~VvP~ 102 (184)
T PRK13690 49 LEVAEAIVEALLEVLKETGIHLAVQGCEHLNRALVVEREVAEKYGLEIVTVVPV 102 (184)
T ss_pred HHHHHHHHHHHHHHhhhcCcEEEEechhhhHHHHHHhHHHHHHcCCeEEEEecC
Confidence 3578899999999998888876666676666543 35788899998887654
No 316
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.41 E-value=1.4e+02 Score=20.02 Aligned_cols=34 Identities=9% Similarity=0.083 Sum_probs=28.9
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccC
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPL 115 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~ 115 (154)
...|.--|..-+..++++|.+.|++.+.+.+.+.
T Consensus 30 ~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~ 63 (241)
T PRK14842 30 RSEGHREGANAIDRLMDASLEYGLKNISLYAFST 63 (241)
T ss_pred hhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeeh
Confidence 5567788999999999999999999998886643
No 317
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=26.34 E-value=1.3e+02 Score=16.95 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=11.5
Q ss_pred ceEEEEEECCeEEEEEEE
Q 047740 51 SGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 51 ~~~~~~~~~~~ivG~~~~ 68 (154)
....+..++++++|.+..
T Consensus 103 ~~l~Vvd~~~~~~Giit~ 120 (126)
T cd04642 103 HRVWVVDEEGKPIGVITL 120 (126)
T ss_pred cEEEEECCCCCEEEEEEH
Confidence 334444445899999865
No 318
>PF13222 DUF4030: Protein of unknown function (DUF4030)
Probab=26.12 E-value=1.6e+02 Score=17.82 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEccCChh---------------HHHHHHHcCCeEeeEeeecccCCCceEEEEee
Q 047740 89 GEALLEAAIKKCRTRTVLRKTLHVDPLRTP---------------AVNLYKKFGFQVDTLIQGYYSADRPAYRMYID 150 (154)
Q Consensus 89 g~~ll~~~~~~~~~~g~~~i~~~~~~~n~~---------------a~~~y~~~Gf~~~~~~~~~~~~~~~~~~m~~~ 150 (154)
.+++-..+-...+..|+....+.+..-|.. .-.++.|.||+..+..+..+..+.+..+..++
T Consensus 17 sseIk~~In~~lk~q~i~~y~Ini~qrnm~iv~~e~RW~~V~~~I~d~lf~Kn~Y~~~gI~~~n~k~~qp~~v~I~t 93 (142)
T PF13222_consen 17 SSEIKKEINKQLKNQGIKPYTINISQRNMEIVKQENRWNYVFSSIFDELFGKNGYKGFGIQQINVKSSQPVTVTIKT 93 (142)
T ss_pred HHHHHHHHHHHHHHcCCceEEEeeeeeeHHHHHHhhhHHHHHHHHHHHHhhccCccccceeEeeecCCCcEEEEEec
Confidence 456777788888888888888877665532 23689999999999887777777766665553
No 319
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=26.02 E-value=1.2e+02 Score=16.72 Aligned_cols=22 Identities=14% Similarity=0.354 Sum_probs=16.2
Q ss_pred cccHHHHHH--HHHHHHHHHcCCc
Q 047740 85 GQGRGEALL--EAAIKKCRTRTVL 106 (154)
Q Consensus 85 g~Gig~~ll--~~~~~~~~~~g~~ 106 (154)
|.|+|+-.+ ..+.+.+.++|+.
T Consensus 10 gsG~~TS~m~~~ki~~~l~~~gi~ 33 (94)
T PRK10310 10 GGAVATSTMAAEEIKELCQSHNIP 33 (94)
T ss_pred CCchhHHHHHHHHHHHHHHHCCCe
Confidence 678888666 6666777777875
No 320
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=25.86 E-value=1.3e+02 Score=16.58 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=10.6
Q ss_pred EEEEEECCeEEEEEEE
Q 047740 53 LLYIQIHGQVVGYVMY 68 (154)
Q Consensus 53 ~~~~~~~~~ivG~~~~ 68 (154)
..+..++|+++|.+..
T Consensus 101 ~~Vv~~~~~~~Gvvt~ 116 (122)
T cd04585 101 LPVVDDQGRLVGIITE 116 (122)
T ss_pred eeEECCCCcEEEEEEH
Confidence 4444345899999865
No 321
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=25.78 E-value=1.7e+02 Score=20.89 Aligned_cols=41 Identities=12% Similarity=0.004 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeE
Q 047740 90 EALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQV 130 (154)
Q Consensus 90 ~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~ 130 (154)
+.+++.+++.+...|++.+.++++..-..-+.-=.+.||+.
T Consensus 130 ~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~ 170 (344)
T cd02922 130 RTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEE 170 (344)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCc
Confidence 35667788888888999999998865333332234455543
No 322
>PRK00301 aat leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
Probab=25.69 E-value=2.1e+02 Score=19.16 Aligned_cols=88 Identities=13% Similarity=0.005 Sum_probs=58.0
Q ss_pred HHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCCCceeeEEee-ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCC
Q 047740 38 LARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKL-NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLR 116 (154)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~-~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n 116 (154)
+.+.+.........+.+=++++|++||-.....-.. ...+.- -+|...-++..+-++.++++..|+.-+-+.+...
T Consensus 115 ~~~aY~~LH~~G~AHSVE~W~~~~LvGGlYGv~iG~--~F~GESMFs~~~nASKvAl~~L~~~L~~~g~~liD~Q~~t~- 191 (233)
T PRK00301 115 IIEAYLELHELGHAHSVEVWQGGELVGGLYGVALGR--AFFGESMFSRATDASKVALAALVEHLRRHGFKLIDCQVLNP- 191 (233)
T ss_pred HHHHHHHHHHcCceEEEEEEECCEEEeeeeccccCC--EEeecccccCCCChHHHHHHHHHHHHHHCCceEEEECCCCH-
Confidence 344555555556667777888999999876642222 333333 5677888999999999999999987554443322
Q ss_pred hhHHHHHHHcCCeEeeE
Q 047740 117 TPAVNLYKKFGFQVDTL 133 (154)
Q Consensus 117 ~~a~~~y~~~Gf~~~~~ 133 (154)
-.+++|-+.+.+
T Consensus 192 -----HL~slGa~~i~R 203 (233)
T PRK00301 192 -----HLASLGAREIPR 203 (233)
T ss_pred -----HHHhcCCEEcCH
Confidence 456677776653
No 323
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=25.60 E-value=83 Score=17.44 Aligned_cols=17 Identities=12% Similarity=0.356 Sum_probs=13.2
Q ss_pred hhHHHHHHHc-CCeEeeE
Q 047740 117 TPAVNLYKKF-GFQVDTL 133 (154)
Q Consensus 117 ~~a~~~y~~~-Gf~~~~~ 133 (154)
.++.+||.+. ||+....
T Consensus 10 ~~a~~FY~~~lg~~~~~~ 27 (121)
T cd07251 10 ARSRAFYEALLGWKPSAD 27 (121)
T ss_pred HHHHHHHHHhcCceeccc
Confidence 5789999765 9988654
No 324
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=25.38 E-value=4.2e+02 Score=22.41 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=44.4
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
...|+.+-.+.+..-++.+++.|++.|++.-.+..+.-..+.-++|+-...+.
T Consensus 362 p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~ 414 (1027)
T PRK09525 362 PEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEA 414 (1027)
T ss_pred cccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEec
Confidence 44566788888999999999999999999877777777788889999988764
No 325
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=25.36 E-value=70 Score=14.27 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=11.4
Q ss_pred hhHHHHHHHcCCeE
Q 047740 117 TPAVNLYKKFGFQV 130 (154)
Q Consensus 117 ~~a~~~y~~~Gf~~ 130 (154)
+..+++|++.|.-+
T Consensus 13 ~~tlR~ye~~Gll~ 26 (38)
T PF00376_consen 13 PRTLRYYEREGLLP 26 (38)
T ss_dssp HHHHHHHHHTTSS-
T ss_pred HHHHHHHHHCCCCC
Confidence 67899999999764
No 326
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=25.25 E-value=1.6e+02 Score=19.84 Aligned_cols=43 Identities=14% Similarity=0.231 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCcEEEEEEccC------ChhHHHHHHHcCCeEeeEe
Q 047740 92 LLEAAIKKCRTRTVLRKTLHVDPL------RTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 92 ll~~~~~~~~~~g~~~i~~~~~~~------n~~a~~~y~~~Gf~~~~~~ 134 (154)
-++..++.|++.|++.|.+....- -...++..++.||+...++
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~Ev 133 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEV 133 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEE
T ss_pred hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeecc
Confidence 457788889999999999874422 1246778889999988766
No 327
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=25.22 E-value=1.5e+02 Score=17.10 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=18.7
Q ss_pred EEEEccCChhHHHHHHH-cCCeEeeEe
Q 047740 109 TLHVDPLRTPAVNLYKK-FGFQVDTLI 134 (154)
Q Consensus 109 ~~~~~~~n~~a~~~y~~-~Gf~~~~~~ 134 (154)
+|.+..+=..|+.||++ +|++.....
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~ 30 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLT 30 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEE
Confidence 45554455689999975 999888765
No 328
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=25.18 E-value=1.5e+02 Score=17.05 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=37.2
Q ss_pred ccccccHHH-HHHHHHHHHHHHcCCcEEEEEEccC---ChhHHHHHHHcCCeEeeEe
Q 047740 82 NYRGQGRGE-ALLEAAIKKCRTRTVLRKTLHVDPL---RTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 82 ~~rg~Gig~-~ll~~~~~~~~~~g~~~i~~~~~~~---n~~a~~~y~~~Gf~~~~~~ 134 (154)
.-++.-+|. .+.+.+.+.+.+.|+..+.+.+... ...+++-..+.|++.....
T Consensus 37 ~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~I~ 93 (108)
T TIGR03632 37 SKKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTSIK 93 (108)
T ss_pred CccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEE
Confidence 334555554 4555667788888999999988654 4567888888899866544
No 329
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=25.16 E-value=1.3e+02 Score=16.67 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=11.8
Q ss_pred ceEEEEEECCeEEEEEEE
Q 047740 51 SGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 51 ~~~~~~~~~~~ivG~~~~ 68 (154)
....+..++|+++|++..
T Consensus 101 ~~~~Vv~~~g~~~Gvit~ 118 (124)
T cd04600 101 HHVPVVDEDRRLVGIVTQ 118 (124)
T ss_pred CceeEEcCCCCEEEEEEh
Confidence 334444448899999875
No 330
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.07 E-value=1.5e+02 Score=19.98 Aligned_cols=33 Identities=12% Similarity=0.093 Sum_probs=28.3
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEcc
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDP 114 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 114 (154)
...|.-.|..-+..++++|.+.|++.+.+.+.+
T Consensus 31 ~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS 63 (239)
T PRK14839 31 RLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFS 63 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 456777899999999999999999999888654
No 331
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=24.98 E-value=1.3e+02 Score=16.36 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=16.1
Q ss_pred HHHHhhcCCceEEEEEECCeEEEEEEE
Q 047740 42 FDEDLKKKNSGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~ivG~~~~ 68 (154)
....+...+...+.+.++++++|++..
T Consensus 79 ~~~~~~~~~~~~~~Vv~~~~~~G~it~ 105 (111)
T cd04589 79 ALLLMTRHRIHRVVVREGGEVVGVLEQ 105 (111)
T ss_pred HHHHHHHhCccEEEEeeCCEEEEEEEh
Confidence 333344444444555567899999875
No 332
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=24.91 E-value=1.8e+02 Score=21.16 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCC
Q 047740 91 ALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGF 128 (154)
Q Consensus 91 ~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf 128 (154)
.+...+++.|.+.|++.+.++|+..-..-+.--.+.||
T Consensus 151 ~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~ 188 (383)
T cd03332 151 DLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGY 188 (383)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCC
Confidence 45566777777789999999987643333333445666
No 333
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.91 E-value=1.5e+02 Score=20.12 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=27.9
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccC
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPL 115 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~ 115 (154)
...|.--|..-+..++++|.+.|++.+.+.+.+.
T Consensus 44 ~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~ 77 (250)
T PRK14840 44 AISGHYYGAKSLPQIVDTALHLGIEVLTLFAFST 77 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeeh
Confidence 3446667899999999999999999998886543
No 334
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.86 E-value=1.6e+02 Score=19.92 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=28.2
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccC
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPL 115 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~ 115 (154)
...|.--|..-+..++++|.+.|++.+.+.+.+.
T Consensus 36 ~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~ 69 (249)
T PRK14834 36 RAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSS 69 (249)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEec
Confidence 4457777999999999999999999999887543
No 335
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.67 E-value=1.5e+02 Score=19.75 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=28.5
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccC
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPL 115 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~ 115 (154)
...|+--|...+..++++|.+.|++.+.+.+.+.
T Consensus 26 ~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~ 59 (233)
T PRK14833 26 RAAGHKKGVKTLREITIWCANHKLECLTLYAFST 59 (233)
T ss_pred hhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecch
Confidence 4557778999999999999999999998886643
No 336
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.65 E-value=1.4e+02 Score=20.25 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=28.2
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEcc
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDP 114 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 114 (154)
...|+--|...+..++++|.+.|++.+.+.+.+
T Consensus 40 ~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS 72 (253)
T PRK14832 40 RIAGHRQGARTLKELLRCCKDWGIKALTAYAFS 72 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 556777899999999999999999999888654
No 337
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=24.61 E-value=1.5e+02 Score=18.98 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEcc
Q 047740 89 GEALLEAAIKKCRTRTVLRKTLHVDP 114 (154)
Q Consensus 89 g~~ll~~~~~~~~~~g~~~i~~~~~~ 114 (154)
|+.++++.++.+.+.|++.+.+.+..
T Consensus 29 g~~li~~~l~~l~~~gi~~i~iv~~~ 54 (221)
T cd06422 29 GKPLIDHALDRLAAAGIRRIVVNTHH 54 (221)
T ss_pred CEEHHHHHHHHHHHCCCCEEEEEccC
Confidence 46788888888888899888886654
No 338
>PLN02535 glycolate oxidase
Probab=24.46 E-value=1.9e+02 Score=20.89 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEccC
Q 047740 91 ALLEAAIKKCRTRTVLRKTLHVDPL 115 (154)
Q Consensus 91 ~ll~~~~~~~~~~g~~~i~~~~~~~ 115 (154)
.+.+.+++.|.+.|++.+.++|+..
T Consensus 137 ~~~~~ll~RA~~aG~~alvlTvD~p 161 (364)
T PLN02535 137 DIAAQLVQRAEKNGYKAIVLTADVP 161 (364)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecCC
Confidence 4556667777888999999998863
No 339
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=24.21 E-value=1.8e+02 Score=17.91 Aligned_cols=46 Identities=9% Similarity=0.226 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEE-----------ccCChhHHHHHHHcCCeEeeEe
Q 047740 89 GEALLEAAIKKCRTRTVLRKTLHV-----------DPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 89 g~~ll~~~~~~~~~~g~~~i~~~~-----------~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
+....+.+.+.+.+.|+..+.+.+ -+...+|++-..+.|++.....
T Consensus 74 Aq~aa~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~ 130 (149)
T PTZ00129 74 AMMAAQDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIE 130 (149)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 456677788888889999999998 4666789999999999987765
No 340
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=24.18 E-value=2.3e+02 Score=19.10 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEccC------ChhHHHHHHHcCCeEeeEe
Q 047740 91 ALLEAAIKKCRTRTVLRKTLHVDPL------RTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 91 ~ll~~~~~~~~~~g~~~i~~~~~~~------n~~a~~~y~~~Gf~~~~~~ 134 (154)
.-++..++.|++.|++.+.+....- -.+.++..++.||+...++
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccc
Confidence 4667778899999999998863311 2356788899999988765
No 341
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=24.17 E-value=1.3e+02 Score=16.23 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=12.5
Q ss_pred CCceEEEEEECCeEEEEEEE
Q 047740 49 KNSGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 49 ~~~~~~~~~~~~~ivG~~~~ 68 (154)
.+...+.+.++++++|.+..
T Consensus 88 ~~~~~~~Vv~~~~~~Gvit~ 107 (113)
T cd04623 88 RRFRHLPVVDGGKLVGIVSI 107 (113)
T ss_pred cCCCEeEEEeCCEEEEEEEH
Confidence 33333444456999999865
No 342
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=24.13 E-value=2.3e+02 Score=19.06 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEeee
Q 047740 89 GEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLIQG 136 (154)
Q Consensus 89 g~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~~ 136 (154)
|+-|+.+..+.+.+.|+.++.+-++ +..-...-+++|++.+-+..+
T Consensus 27 GkpmI~rV~e~a~~s~~~rvvVATD--de~I~~av~~~G~~avmT~~~ 72 (247)
T COG1212 27 GKPMIVRVAERALKSGADRVVVATD--DERIAEAVQAFGGEAVMTSKD 72 (247)
T ss_pred CchHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHhCCEEEecCCC
Confidence 5678888888888888887776654 455666677788877665543
No 343
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=24.07 E-value=1.6e+02 Score=17.00 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCC
Q 047740 92 LLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGF 128 (154)
Q Consensus 92 ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf 128 (154)
++..+.+.+.+.|.+...+ ..+.....+|++.+|=
T Consensus 70 ~i~~l~~~a~~~g~~v~ii--s~~~e~G~~L~~~~gG 104 (113)
T PF03465_consen 70 LIEELIELAEQSGAKVEII--SSEHEEGEQLLKGFGG 104 (113)
T ss_dssp HHHHHHHHHHHTTSEEEEE---TTSHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHcCCEEEEE--cCCCccHHHHHhcCCc
Confidence 7899999999998853332 3344567778788773
No 344
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=23.98 E-value=1.9e+02 Score=17.86 Aligned_cols=53 Identities=21% Similarity=0.394 Sum_probs=33.2
Q ss_pred ccccccHHH-HHHHHHHHHHHHcCCcEEEEEEccCC----------------hhHHHHHHHcCCeEeeEe
Q 047740 82 NYRGQGRGE-ALLEAAIKKCRTRTVLRKTLHVDPLR----------------TPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 82 ~~rg~Gig~-~ll~~~~~~~~~~g~~~i~~~~~~~n----------------~~a~~~y~~~Gf~~~~~~ 134 (154)
.|=|-.+|. +|++.+.+.|++.++..+.++-.+.- ..-..+.+++|...+-.+
T Consensus 13 ~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~ 82 (157)
T PF06574_consen 13 NFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVI 82 (157)
T ss_dssp --TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE
T ss_pred CCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 445555665 78999999999999888877765431 112567788887665443
No 345
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=23.93 E-value=1.4e+02 Score=16.53 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=16.0
Q ss_pred CChhHHHHHHH-cCCeEeeEee
Q 047740 115 LRTPAVNLYKK-FGFQVDTLIQ 135 (154)
Q Consensus 115 ~n~~a~~~y~~-~Gf~~~~~~~ 135 (154)
+-.+|+.+|.+ +|+++.....
T Consensus 9 Dl~~a~~~~~~~lG~~~~~~~~ 30 (109)
T PF13669_consen 9 DLDAAAAFYCDVLGFEPWERYR 30 (109)
T ss_dssp -HHHHHHHHHHCTTHEEEEEEE
T ss_pred CHHHHHHHHHHhhCCcEEEEEe
Confidence 55689999998 9999876543
No 346
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=23.92 E-value=1e+02 Score=17.33 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=19.1
Q ss_pred cEEEEEEccCChhHHHHHH-HcCCeEeeE
Q 047740 106 LRKTLHVDPLRTPAVNLYK-KFGFQVDTL 133 (154)
Q Consensus 106 ~~i~~~~~~~n~~a~~~y~-~~Gf~~~~~ 133 (154)
..+.+.|. +=.++..||+ .+||+....
T Consensus 3 ~hv~l~v~-D~~~s~~FY~~~lG~~~~~~ 30 (128)
T TIGR03081 3 DHVGIAVP-DLEEAAKLYEDVLGAHVSHI 30 (128)
T ss_pred CEEEEEeC-CHHHHHHHHHHHhCCCCccc
Confidence 45666665 3468999998 589998653
No 347
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=23.73 E-value=2.4e+02 Score=23.99 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCcEEEEEEccCChhHHHHH---HHcCCeEeeEeeec
Q 047740 93 LEAAIKKCRTRTVLRKTLHVDPLRTPAVNLY---KKFGFQVDTLIQGY 137 (154)
Q Consensus 93 l~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y---~~~Gf~~~~~~~~~ 137 (154)
++.+.+.|.+.|+..+.++-...=-.+++|| ++.|.+++--..-+
T Consensus 22 i~~Lv~~A~~~g~~AlaiTD~~nl~Gav~Fy~~ak~~gikpIiG~e~~ 69 (1139)
T COG0587 22 IEELVKKAKELGMPALALTDHNNLYGAVEFYKAAKKAGIKPIIGCEAY 69 (1139)
T ss_pred HHHHHHHHHHcCCCeEEEecCCcceeHHHHHHHHHHcCCeEEeeeEEE
Confidence 4678889999999988776443334789999 68999987544433
No 348
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=23.65 E-value=1.4e+02 Score=16.31 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=15.0
Q ss_pred HhhcCCceEEEEEECCeEEEEEEEE
Q 047740 45 DLKKKNSGLLYIQIHGQVVGYVMYA 69 (154)
Q Consensus 45 ~~~~~~~~~~~~~~~~~ivG~~~~~ 69 (154)
.+...+...+.+.++|+++|.+...
T Consensus 76 ~~~~~~~~~~pVv~~~~~~Gvvt~~ 100 (105)
T cd04591 76 LFRKLGLRHLLVVDEGRLVGIITRK 100 (105)
T ss_pred HHHHcCCCEEEEEECCeEEEEEEhh
Confidence 3333333344444789999998763
No 349
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.45 E-value=1.4e+02 Score=20.85 Aligned_cols=32 Identities=16% Similarity=0.028 Sum_probs=27.6
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEc
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVD 113 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~ 113 (154)
...|+-.|..-+..++++|.+.|++.+.+...
T Consensus 89 ~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaF 120 (296)
T PRK14827 89 RTEGHKMGEAVVIDIACGAIELGIKWLSLYAF 120 (296)
T ss_pred HhHHHHHHHHHHHHHHHHHHHcCCCEEEEeee
Confidence 45566778899999999999999999998876
No 350
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=23.38 E-value=1.6e+02 Score=16.80 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=22.2
Q ss_pred ccHHHHHHHHHHHHHHHcCCcEEEEEEccCChh
Q 047740 86 QGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTP 118 (154)
Q Consensus 86 ~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~ 118 (154)
.|--+++++.+. .+++.|.+.+.++..+.++-
T Consensus 63 sg~~~~~~~~~~-~ak~~g~~vi~iT~~~~~~l 94 (131)
T PF01380_consen 63 SGETRELIELLR-FAKERGAPVILITSNSESPL 94 (131)
T ss_dssp SSTTHHHHHHHH-HHHHTTSEEEEEESSTTSHH
T ss_pred cccchhhhhhhH-HHHhcCCeEEEEeCCCCCch
Confidence 345567777666 89999998877776655543
No 351
>PHA02126 hypothetical protein
Probab=23.25 E-value=51 Score=19.24 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=37.7
Q ss_pred ccccccHHHHHHHHHHHHHHHc------CCcEEEEEEccCC--hhHHHHHHHcCCeEeeEeeeccc
Q 047740 82 NYRGQGRGEALLEAAIKKCRTR------TVLRKTLHVDPLR--TPAVNLYKKFGFQVDTLIQGYYS 139 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~------g~~~i~~~~~~~n--~~a~~~y~~~Gf~~~~~~~~~~~ 139 (154)
..||+|=.+.=+-..+.+|++. |-..+.+.+.... .--..+|.|-||....+...||-
T Consensus 66 ~~r~~~~nk~rmldtlsfcrdkmhfell~rppviif~t~~~~~~ir~alysktgfsk~~eftayyi 131 (153)
T PHA02126 66 SIRRAGGNKPRMLDTLSFCRDKMHFELLGRPPVIIFNTQTPLTDIRIALYSKTGFSKSTEFTAYYV 131 (153)
T ss_pred HHHhccCCCchhHHHHHHHhhhHHHHHhCCCCEEEEeccCchHHHHHHHHhccCCCCCceeeeeee
Confidence 6777777666555566666542 4444444443322 23468999999999888877764
No 352
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=23.16 E-value=1.9e+02 Score=18.48 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=20.2
Q ss_pred EEEEEEccCChhHHHHHHHcCCeEeeEee
Q 047740 107 RKTLHVDPLRTPAVNLYKKFGFQVDTLIQ 135 (154)
Q Consensus 107 ~i~~~~~~~n~~a~~~y~~~Gf~~~~~~~ 135 (154)
.+.+.+. +-..+..+++++||.....+.
T Consensus 80 E~E~~v~-D~~~~~~il~~LGF~~~~~Vk 107 (178)
T COG1437 80 EIEIEVS-DVEKALEILKRLGFKEVAVVK 107 (178)
T ss_pred eEEEEeC-CHHHHHHHHHHcCCceeeEEE
Confidence 4455554 334688999999999988763
No 353
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.14 E-value=1.6e+02 Score=20.04 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=27.6
Q ss_pred cc-ccccHHHHHHHHHHHHHHHcCCcEEEEEEc
Q 047740 82 NY-RGQGRGEALLEAAIKKCRTRTVLRKTLHVD 113 (154)
Q Consensus 82 ~~-rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~ 113 (154)
.. .|.--|..-+..++++|.+.|++.+.+.+.
T Consensus 48 ~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaF 80 (256)
T PRK14828 48 DVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLL 80 (256)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 44 677789999999999999999999988765
No 354
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.12 E-value=1.5e+02 Score=20.40 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=27.6
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEcc
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDP 114 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 114 (154)
...|.--|..-+..++++|.+.|++.+.+.+.+
T Consensus 63 ~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS 95 (275)
T PRK14835 63 REMGHEFGVQKAYEVLEWCLELGIPTVTIWVFS 95 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 445777889999999999999999999887553
No 355
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=23.06 E-value=1.5e+02 Score=16.42 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=14.6
Q ss_pred HHhhcCC-ceEEEEEECCeEEEEEEE
Q 047740 44 EDLKKKN-SGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 44 ~~~~~~~-~~~~~~~~~~~ivG~~~~ 68 (154)
..+...+ ....+..++|+++|++..
T Consensus 91 ~~~~~~~~~~~~Vvd~~g~~~Gvit~ 116 (122)
T cd04635 91 ELMLEHDIGRLPVVNEKDQLVGIVDR 116 (122)
T ss_pred HHHHHcCCCeeeEEcCCCcEEEEEEh
Confidence 3333333 334444456899999875
No 356
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=22.98 E-value=2.2e+02 Score=18.27 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=31.5
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
++|--|+|.+++..+ |++++.+-.. |+.-..-..-+|-+.++..
T Consensus 125 d~R~yGiGAQIL~dL-------Gv~~mrLLs~--~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 125 DARDYGLAAQILRDL-------GIKSVRLLTN--NPDKIDALEGYGIEVVERV 168 (193)
T ss_pred cccchHHHHHHHHHc-------CCCeEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 589999999888755 7888888754 3334444557787777665
No 357
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=22.95 E-value=1.3e+02 Score=21.47 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=28.4
Q ss_pred ccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcC
Q 047740 84 RGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFG 127 (154)
Q Consensus 84 rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~G 127 (154)
-|-|||.+++.++.+.....+-..+.+..... ...-..|++.|
T Consensus 10 pGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~-~~G~~~~~~~G 52 (348)
T COG0473 10 PGDGIGPEVMAAALKVLEAAAEFGLDFEFEEA-EVGGEAYDKHG 52 (348)
T ss_pred CCCCCCHHHHHHHHHHHHHhhhcCCceEEEEe-hhhHHHHHHcC
Confidence 57899999999999888766322233332222 34567788877
No 358
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=22.93 E-value=2.3e+02 Score=18.52 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEccCC-hhHHHHHHHcCCeEeeEeeeccc
Q 047740 91 ALLEAAIKKCRTRTVLRKTLHVDPLR-TPAVNLYKKFGFQVDTLIQGYYS 139 (154)
Q Consensus 91 ~ll~~~~~~~~~~g~~~i~~~~~~~n-~~a~~~y~~~Gf~~~~~~~~~~~ 139 (154)
.+++.+.+..+..| .+.+.+.... .....+.++.||+.+....++..
T Consensus 198 ~~i~~~~~~L~~gG--~~~~~~~~~~~~~~~~~l~~~gf~~v~~~~d~~~ 245 (251)
T TIGR03534 198 RIIAQAPRLLKPGG--WLLLEIGYDQGEAVRALFEAAGFADVETRKDLAG 245 (251)
T ss_pred HHHHHHHHhcccCC--EEEEEECccHHHHHHHHHHhCCCCceEEEeCCCC
Confidence 45555555555545 3444443322 23578889999998887766554
No 359
>CHL00041 rps11 ribosomal protein S11
Probab=22.73 E-value=1.7e+02 Score=17.04 Aligned_cols=51 Identities=16% Similarity=0.286 Sum_probs=36.1
Q ss_pred ccccHH-HHHHHHHHHHHHHcCCcEEEEEEccC---ChhHHHHHHHcCCeEeeEe
Q 047740 84 RGQGRG-EALLEAAIKKCRTRTVLRKTLHVDPL---RTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 84 rg~Gig-~~ll~~~~~~~~~~g~~~i~~~~~~~---n~~a~~~y~~~Gf~~~~~~ 134 (154)
++.-+| ..+.+.+.+.+.+.|++.+.+.+... ...+++-..+.|++.....
T Consensus 52 K~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~ 106 (116)
T CHL00041 52 KGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIR 106 (116)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEE
Confidence 334444 45666778888888999999887644 3467777888898876544
No 360
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=22.72 E-value=1.4e+02 Score=16.06 Aligned_cols=36 Identities=8% Similarity=-0.035 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHc
Q 047740 91 ALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKF 126 (154)
Q Consensus 91 ~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~ 126 (154)
.++...+.+....|+..+++..+.+...+..+.+++
T Consensus 5 ~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~ 40 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRAL 40 (97)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhC
Confidence 345666667777899999998777666677777664
No 361
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=22.72 E-value=2.1e+02 Score=18.06 Aligned_cols=51 Identities=8% Similarity=0.073 Sum_probs=37.7
Q ss_pred ccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhH---HHHHHHcCCeEeeEeee
Q 047740 86 QGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPA---VNLYKKFGFQVDTLIQG 136 (154)
Q Consensus 86 ~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a---~~~y~~~Gf~~~~~~~~ 136 (154)
.-+|..+++.+.+...+.|+.-..=.|..-|.+- ....++.||+.+...+.
T Consensus 42 ~eva~~i~~~l~~~~~~~gi~lA~Q~CEHlNRALvvEr~~a~~~~le~V~VvP~ 95 (172)
T TIGR01440 42 MEVAETIVNALDVVLKKTGVTLAFQGCEHINRALVMERSVAEPLGMEEVSVVPD 95 (172)
T ss_pred HHHHHHHHHHHHHHhhhcCeEEEEechhhhhHHHHHhHHHHHHcCCceEEEecC
Confidence 3578889999998888888876666676666543 24788899998887544
No 362
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=22.65 E-value=2.4e+02 Score=23.92 Aligned_cols=42 Identities=14% Similarity=0.118 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 90 EALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 90 ~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
.+++....++|..+|..-++..|.++. ..+|.+.||.....-
T Consensus 298 ~~~i~~F~~~a~~~g~~p~fy~vse~~---~~~~~~~G~~~lklG 339 (1094)
T PRK02983 298 PQAIDAWLALARTYGWAPAVMGASEAG---ARAYREAGLSALELG 339 (1094)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEECHHH---HHHHHHcCCcEEEec
Confidence 478899999999999988888887654 558999999976543
No 363
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=22.63 E-value=1.4e+02 Score=16.13 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=12.6
Q ss_pred CCceEEEEEECCeEEEEEEE
Q 047740 49 KNSGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 49 ~~~~~~~~~~~~~ivG~~~~ 68 (154)
.+...+.+.++++++|.+..
T Consensus 87 ~~~~~l~Vv~~~~~~Gvvt~ 106 (112)
T cd04625 87 RHLRYLPVLDGGTLLGVISF 106 (112)
T ss_pred cCCCeeeEEECCEEEEEEEH
Confidence 33333444458999999875
No 364
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.57 E-value=1.2e+02 Score=15.14 Aligned_cols=26 Identities=15% Similarity=0.338 Sum_probs=16.0
Q ss_pred cEEEEEEccCCh-hHHHHHHHcCCeEe
Q 047740 106 LRKTLHVDPLRT-PAVNLYKKFGFQVD 131 (154)
Q Consensus 106 ~~i~~~~~~~n~-~a~~~y~~~Gf~~~ 131 (154)
..+.+.+...+. ...+..++.||+..
T Consensus 43 ~~v~i~v~~~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 43 KILVFRVQTMNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred EEEEEEEecCCHHHHHHHHHHCCCeee
Confidence 344555544444 66777788888764
No 365
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=22.54 E-value=1.8e+02 Score=18.77 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEEccC
Q 047740 90 EALLEAAIKKCRTRTVLRKTLHVDPL 115 (154)
Q Consensus 90 ~~ll~~~~~~~~~~g~~~i~~~~~~~ 115 (154)
+.+++..++.+...|++.+.+.+...
T Consensus 29 ~~li~~~l~~l~~~gi~~i~vv~~~~ 54 (229)
T cd02523 29 KPLLERQIETLKEAGIDDIVIVTGYK 54 (229)
T ss_pred EEHHHHHHHHHHHCCCceEEEEeccC
Confidence 47788888888888888888877654
No 366
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=22.31 E-value=91 Score=16.75 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=17.9
Q ss_pred EEEEEEccCChhHHHHHH-HcCCeEeeE
Q 047740 107 RKTLHVDPLRTPAVNLYK-KFGFQVDTL 133 (154)
Q Consensus 107 ~i~~~~~~~n~~a~~~y~-~~Gf~~~~~ 133 (154)
.+.+.|. +=..+++||+ .+||+....
T Consensus 3 Hi~l~v~-d~~~~~~FY~~~lG~~~~~~ 29 (114)
T cd07245 3 HVALRVP-DLEASRAFYTDVLGLEEGPR 29 (114)
T ss_pred eEEEecC-CHHHHHHHHHHccCCcccCc
Confidence 4455554 3357899996 899987654
No 367
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=22.26 E-value=1.4e+02 Score=20.11 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=33.5
Q ss_pred cccHHHHHHHHHHHHHHHc-CCcEEEEEEccCChhHHHHHHHcCCeE
Q 047740 85 GQGRGEALLEAAIKKCRTR-TVLRKTLHVDPLRTPAVNLYKKFGFQV 130 (154)
Q Consensus 85 g~Gig~~ll~~~~~~~~~~-g~~~i~~~~~~~n~~a~~~y~~~Gf~~ 130 (154)
+-|+|+.-+.+.+.++... |-+.+.+...|.| +.++.-...+..
T Consensus 10 kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN--~Lrlhfg~~~~~ 54 (243)
T PF06564_consen 10 KGGVGKTTLTANLAWALARLGESVLAIDLDPQN--LLRLHFGLPLDD 54 (243)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHH--HHHHhcCCCCcc
Confidence 3499999998888888877 8888888888877 566665555543
No 368
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=22.16 E-value=1.5e+02 Score=16.06 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=11.1
Q ss_pred eEEEEEECCeEEEEEEE
Q 047740 52 GLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 52 ~~~~~~~~~~ivG~~~~ 68 (154)
...+..++|+++|.+..
T Consensus 89 ~~~Vv~~~~~~~Gvit~ 105 (111)
T cd04590 89 MAIVVDEYGGTAGLVTL 105 (111)
T ss_pred EEEEEECCCCEEEEeEH
Confidence 33444446899999865
No 369
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.02 E-value=1.8e+02 Score=19.62 Aligned_cols=33 Identities=15% Similarity=0.020 Sum_probs=28.2
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEcc
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDP 114 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~ 114 (154)
...|.--|..-+..++++|.+.|++.+.+.+.+
T Consensus 32 ~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS 64 (242)
T PRK14838 32 RSFGHQAGAETVHIITEEAARLGVKFLTLYTFS 64 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 456777899999999999999999999888664
No 370
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=21.89 E-value=1.1e+02 Score=14.59 Aligned_cols=16 Identities=25% Similarity=0.355 Sum_probs=11.8
Q ss_pred hHHHHHHHcCCeEeeE
Q 047740 118 PAVNLYKKFGFQVDTL 133 (154)
Q Consensus 118 ~a~~~y~~~Gf~~~~~ 133 (154)
..+++.++.||+....
T Consensus 3 el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 3 ELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHCCCEEecC
Confidence 3578999999998854
No 371
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=21.88 E-value=95 Score=15.28 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=6.0
Q ss_pred cHHHHHHHHHHHHH
Q 047740 87 GRGEALLEAAIKKC 100 (154)
Q Consensus 87 Gig~~ll~~~~~~~ 100 (154)
|+|....+.+.+.+
T Consensus 45 Gig~~~a~~i~~~~ 58 (60)
T PF14520_consen 45 GIGEKTAEKIIEAA 58 (60)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 34444444444433
No 372
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=21.85 E-value=1.6e+02 Score=16.40 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=15.8
Q ss_pred cccHHHH--HHHHHHHHHHHcCCc
Q 047740 85 GQGRGEA--LLEAAIKKCRTRTVL 106 (154)
Q Consensus 85 g~Gig~~--ll~~~~~~~~~~g~~ 106 (154)
|.|+|+- +-..+.+.++++|++
T Consensus 9 G~GvgSS~~ik~kve~~l~~~gi~ 32 (93)
T COG3414 9 GNGVGSSTMIKMKVEEVLKELGID 32 (93)
T ss_pred CCCccHHHHHHHHHHHHHHHcCCC
Confidence 6677774 445677888888875
No 373
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=21.85 E-value=1.5e+02 Score=16.05 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=11.5
Q ss_pred eEEEEEECCeEEEEEEE
Q 047740 52 GLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 52 ~~~~~~~~~~ivG~~~~ 68 (154)
...+..++++++|.+..
T Consensus 86 ~~~Vv~~~~~~~Gvit~ 102 (109)
T cd04606 86 ALPVVDEEGRLVGIITV 102 (109)
T ss_pred eeeeECCCCcEEEEEEh
Confidence 34444447899999875
No 374
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=21.74 E-value=2e+02 Score=17.51 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=43.4
Q ss_pred CCeEEEEEEEEeCCCceeeEEee-ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeE
Q 047740 59 HGQVVGYVMYAWPTSLSASITKL-NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQV 130 (154)
Q Consensus 59 ~~~ivG~~~~~~~~~~~~~i~~~-~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~ 130 (154)
++++.|.-.+..-.+-...+..+ =||..-..-.+++.++ +.+.+.+++...-.|..+..+.+..|-..
T Consensus 55 ~~eiLG~k~y~sL~dIpe~IDiVdvFR~~e~~~~i~~eal----~~~~kv~W~QlGi~n~ea~~~~~~aG~~v 123 (140)
T COG1832 55 GEEILGEKVYPSLADIPEPIDIVDVFRRSEAAPEVAREAL----EKGAKVVWLQLGIRNEEAAEKARDAGLDV 123 (140)
T ss_pred hHHhcCchhhhcHHhCCCCCcEEEEecChhhhHHHHHHHH----hhCCCeEEEecCcCCHHHHHHHHHhCcHH
Confidence 34666665553222222334444 6776655555554444 44688999999999999999999999743
No 375
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=21.71 E-value=91 Score=17.33 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=13.5
Q ss_pred hhHHHHHHH-cCCeEeeE
Q 047740 117 TPAVNLYKK-FGFQVDTL 133 (154)
Q Consensus 117 ~~a~~~y~~-~Gf~~~~~ 133 (154)
.+|..||.+ +||+....
T Consensus 13 ~~s~~FY~~~lG~~~~~~ 30 (119)
T cd08359 13 AETADFYVRHFGFTVVFD 30 (119)
T ss_pred HHHHHHHHHhhCcEEEec
Confidence 578999964 99987754
No 376
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=21.57 E-value=77 Score=17.17 Aligned_cols=44 Identities=27% Similarity=0.259 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHc-CCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 91 ALLEAAIKKCRTR-TVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 91 ~ll~~~~~~~~~~-g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
+|++.+-..-... |-+.-...+...-.....-.++.||+.++.-
T Consensus 26 ~LM~~LgA~~~~~lgn~f~ey~~~~~Pr~VLnKLE~~G~kVvsmt 70 (83)
T PF06399_consen 26 ELMAYLGAKKRTPLGNNFKEYHVDDPPRVVLNKLEKMGYKVVSMT 70 (83)
T ss_dssp HHHHHHT-EEE--TT-SS-EEEESS-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHhcCceeccccCcceEEEcCCChHHHHHHHHhcCeEEEEEe
Confidence 4444443332222 4444455555443456778899999998743
No 377
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=21.56 E-value=1.6e+02 Score=16.27 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=13.8
Q ss_pred HHhhcCCceEEEEEE-CCeEEEEEEE
Q 047740 44 EDLKKKNSGLLYIQI-HGQVVGYVMY 68 (154)
Q Consensus 44 ~~~~~~~~~~~~~~~-~~~ivG~~~~ 68 (154)
..+...+...+.+.+ +|+++|++..
T Consensus 91 ~~~~~~~~~~~~Vv~~~~~~~Gvit~ 116 (122)
T cd04803 91 EIMVENKIGCLPVVDDKGTLVGIITR 116 (122)
T ss_pred HHHHHcCCCeEEEEcCCCCEEEEEEH
Confidence 333333333344444 4899998865
No 378
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=21.44 E-value=2.1e+02 Score=20.47 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=32.0
Q ss_pred ccccccHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeE
Q 047740 82 NYRGQGRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQV 130 (154)
Q Consensus 82 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~ 130 (154)
..+.+.. ...+++.+.+.|++.+.++++.....-+.=-.+.||..
T Consensus 118 ~~~d~~~----~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~ 162 (356)
T PF01070_consen 118 PPRDREL----TRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSV 162 (356)
T ss_dssp GBSSHHH----HHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCC
T ss_pred EecCHHH----HHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCC
Confidence 4444444 44555667778999999999887766666677888844
No 379
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=21.21 E-value=1.9e+02 Score=17.22 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=20.7
Q ss_pred cccHHHHHHHHHHHHHHHcCCcEEEEEEcc-CChhHHHHH
Q 047740 85 GQGRGEALLEAAIKKCRTRTVLRKTLHVDP-LRTPAVNLY 123 (154)
Q Consensus 85 g~Gig~~ll~~~~~~~~~~g~~~i~~~~~~-~n~~a~~~y 123 (154)
..|+|+++.+++.+. |...+.+.... +......+.
T Consensus 9 ~~giG~~~a~~l~~~----g~~~v~~~~r~~~~~~~~~l~ 44 (167)
T PF00106_consen 9 SSGIGRALARALARR----GARVVILTSRSEDSEGAQELI 44 (167)
T ss_dssp TSHHHHHHHHHHHHT----TTEEEEEEESSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc----CceEEEEeeeccccccccccc
Confidence 468888888887665 45556665543 123344443
No 380
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=21.19 E-value=1.5e+02 Score=15.77 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=13.2
Q ss_pred cCCceEEEEEECCeEEEEEEE
Q 047740 48 KKNSGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 48 ~~~~~~~~~~~~~~ivG~~~~ 68 (154)
..+...+.+.++++++|.+..
T Consensus 79 ~~~~~~~~Vv~~~~~~G~it~ 99 (105)
T cd04599 79 EKKIERLPVLRERKLVGIITK 99 (105)
T ss_pred HcCCCEeeEEECCEEEEEEEH
Confidence 333434444556999999875
No 381
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=20.91 E-value=2.3e+02 Score=17.84 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEccCC
Q 047740 89 GEALLEAAIKKCRTRTVLRKTLHVDPLR 116 (154)
Q Consensus 89 g~~ll~~~~~~~~~~g~~~i~~~~~~~n 116 (154)
|+.|+++.++.+...|++.+.+.+....
T Consensus 28 g~pli~~~l~~l~~~g~~~i~vv~~~~~ 55 (217)
T cd04181 28 GKPILEYIIERLARAGIDEIILVVGYLG 55 (217)
T ss_pred CeeHHHHHHHHHHHCCCCEEEEEeccCH
Confidence 4678888888888888888888877643
No 382
>cd00145 POLBc DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA. DNA-directed DNA polymerases are multifunctional with both synthetic (polymerase) and degradative modes (exonucleases) and play roles in the processes of DNA replication, repair, and recombination. DNA-dependent DNA polymerases can be classified in six main groups based upon their phylogenetic relationships with E. coli polymerase I (class A), E. coli polymerase II (class B), E. coli polymerase III (class C), euryarchaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB, and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family B DNA polymerases include E. coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative DNA polymerases (alpha, delta, epsilon, and zeta), and eukaryotic viral and plasmid-borne enzymes. DNA polymerase is
Probab=20.84 E-value=1.6e+02 Score=20.59 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHHcCCcEEEEEEc
Q 047740 87 GRGEALLEAAIKKCRTRTVLRKTLHVD 113 (154)
Q Consensus 87 Gig~~ll~~~~~~~~~~g~~~i~~~~~ 113 (154)
-.|+.++..+.+.+.+.|...++..++
T Consensus 136 ~~GR~~l~~~~~~ie~~g~~VIYGDTD 162 (323)
T cd00145 136 SFGREIIQDTIALVEEHGARVIYGDTD 162 (323)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 568888899999888888766665443
No 383
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=20.78 E-value=1.5e+02 Score=15.44 Aligned_cols=18 Identities=22% Similarity=0.253 Sum_probs=14.6
Q ss_pred hhHHHHHHHcCCeEeeEe
Q 047740 117 TPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 117 ~~a~~~y~~~Gf~~~~~~ 134 (154)
...++..++.||..+...
T Consensus 10 ke~ik~Le~~Gf~~vrqk 27 (66)
T COG1724 10 KEVIKALEKDGFQLVRQK 27 (66)
T ss_pred HHHHHHHHhCCcEEEEee
Confidence 347889999999988765
No 384
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=20.61 E-value=1.6e+02 Score=16.66 Aligned_cols=27 Identities=11% Similarity=0.297 Sum_probs=18.4
Q ss_pred CcEEEEEEccCChhHHHHHHH-cCCeEee
Q 047740 105 VLRKTLHVDPLRTPAVNLYKK-FGFQVDT 132 (154)
Q Consensus 105 ~~~i~~~~~~~n~~a~~~y~~-~Gf~~~~ 132 (154)
+..+.+.|.. =.+|..||++ +||+...
T Consensus 5 ~~hv~l~v~D-l~~s~~FY~~~lG~~~~~ 32 (123)
T cd08351 5 LNHTIVPARD-REASAEFYAEILGLPWAK 32 (123)
T ss_pred EeEEEEEcCC-HHHHHHHHHHhcCCEeee
Confidence 3455565543 3578999965 7998865
No 385
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=20.30 E-value=2.5e+02 Score=18.75 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=27.1
Q ss_pred HHHHHHHHHc---CCcEEEEEEccCChhHHHHHHHcC
Q 047740 94 EAAIKKCRTR---TVLRKTLHVDPLRTPAVNLYKKFG 127 (154)
Q Consensus 94 ~~~~~~~~~~---g~~~i~~~~~~~n~~a~~~y~~~G 127 (154)
..++++.+++ ..+.|....+.+|.-+.+||+.+-
T Consensus 81 n~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR 117 (223)
T cd00218 81 NLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMR 117 (223)
T ss_pred HHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHh
Confidence 4666777776 677888889999999999998743
No 386
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=20.20 E-value=2.6e+02 Score=23.06 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHHHHHH--cCCcEEEEEEccCChhHHHHHHHcCCeEeeEe
Q 047740 86 QGRGEALLEAAIKKCRT--RTVLRKTLHVDPLRTPAVNLYKKFGFQVDTLI 134 (154)
Q Consensus 86 ~Gig~~ll~~~~~~~~~--~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~~~ 134 (154)
.|++ +|++.+.+.+++ .|++.-.+.-...++.++.|+.++|+..+..-
T Consensus 807 ~aV~-~Li~~~v~~~r~~~~~~~vgICGE~ggdp~~i~~l~~lGld~vS~s 856 (879)
T PRK09279 807 EGVG-ELVEIAVERGRATRPDLKLGICGEHGGDPASIEFCHKVGLDYVSCS 856 (879)
T ss_pred HHHH-HHHHHHHHHHHhcCCCCEEEECCCCccCHHHHHHHHHCCCCEEEEC
Confidence 3454 455666666776 35543333344668999999999999887754
No 387
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=20.17 E-value=1.6e+02 Score=15.80 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=13.6
Q ss_pred hhcCCceEEEEEECCeEEEEEEE
Q 047740 46 LKKKNSGLLYIQIHGQVVGYVMY 68 (154)
Q Consensus 46 ~~~~~~~~~~~~~~~~ivG~~~~ 68 (154)
+...+...+.+.++|+++|.+..
T Consensus 76 ~~~~~~~~~~Vv~~~~~iGvit~ 98 (104)
T cd04594 76 MMKNKTRWCPVVDDGKFKGIVTL 98 (104)
T ss_pred HHHcCcceEEEEECCEEEEEEEH
Confidence 33333333444458999999875
No 388
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1.
Probab=20.16 E-value=83 Score=12.41 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=9.5
Q ss_pred ccHHHHHHHHHHHH
Q 047740 86 QGRGEALLEAAIKK 99 (154)
Q Consensus 86 ~Gig~~ll~~~~~~ 99 (154)
.|+|....+.+.++
T Consensus 7 ~GiG~k~A~~il~~ 20 (26)
T smart00278 7 PGIGPKTAEKILEA 20 (26)
T ss_pred CCCCHHHHHHHHHh
Confidence 47777777776653
No 389
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=20.08 E-value=3.4e+02 Score=19.45 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHHHHHcCCcEEEEEEccCChhHHHHHHHcCCeEee
Q 047740 87 GRGEALLEAAIKKCRTRTVLRKTLHVDPLRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 87 Gig~~ll~~~~~~~~~~g~~~i~~~~~~~n~~a~~~y~~~Gf~~~~ 132 (154)
|+| -|-..++++|+..|++.+.++ .+..-..+.+++|-...-
T Consensus 174 G~G-GlGh~avQ~Aka~ga~Via~~---~~~~K~e~a~~lGAd~~i 215 (339)
T COG1064 174 GAG-GLGHMAVQYAKAMGAEVIAIT---RSEEKLELAKKLGADHVI 215 (339)
T ss_pred CCc-HHHHHHHHHHHHcCCeEEEEe---CChHHHHHHHHhCCcEEE
Confidence 556 677788889998996655555 345578889999987654
No 390
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=20.05 E-value=1.9e+02 Score=19.55 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEE
Q 047740 88 RGEALLEAAIKKCRTRTVLRKTLH 111 (154)
Q Consensus 88 ig~~ll~~~~~~~~~~g~~~i~~~ 111 (154)
=|.++++.++..|++.|++.|-+-
T Consensus 93 ~aleiM~KaI~LA~dLGIRtIQLA 116 (287)
T COG3623 93 QALEIMEKAIQLAQDLGIRTIQLA 116 (287)
T ss_pred HHHHHHHHHHHHHHHhCceeEeec
Confidence 356899999999999999888763
No 391
>PRK04531 acetylglutamate kinase; Provisional
Probab=20.02 E-value=3.6e+02 Score=19.75 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=55.1
Q ss_pred hHHHHHHHhhhhCCCcHHHHHHHHHHhhcCCceEEEEEECCeEEEEEEEEeCCCceeeEEee----ccccccHHHHHHHH
Q 047740 20 VVDEIVKMEKKIFPKHESLARSFDEDLKKKNSGLLYIQIHGQVVGYVMYAWPTSLSASITKL----NYRGQGRGEALLEA 95 (154)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~i~~~----~~rg~Gig~~ll~~ 95 (154)
|.+.+..+....|..... ..++. ... .+-++.++..=|.+.+.++ +...++..+ .-||.|++..+...
T Consensus 263 d~~~l~~ll~~sf~r~~~-~~y~~----~~~--~~~~y~~~~y~~~Aiv~~~-~~~~~Ldkf~v~~~~~~~~v~d~vf~~ 334 (398)
T PRK04531 263 DLERLNLLIESSFGRTLK-PDYFD----TTQ--LLRAYVSENYRAAAILTET-GGGPYLDKFAVLDDARGEGLGRAVWNV 334 (398)
T ss_pred CHHHHHHHHhhhcccchH-HHHhc----cCC--ceEEEEeCCCcEEEEEecC-CCceEeEEEEEccchhhcChHHHHHHH
Confidence 566666666555543332 22222 122 2223335555555555443 345666666 78888999888887
Q ss_pred HHHHHHHcCCcEEEEEEccCChhHHHHH--HHcCCeEee
Q 047740 96 AIKKCRTRTVLRKTLHVDPLRTPAVNLY--KKFGFQVDT 132 (154)
Q Consensus 96 ~~~~~~~~g~~~i~~~~~~~n~~a~~~y--~~~Gf~~~~ 132 (154)
+.+.. ..+.+.+.++|+. .+|| ++-|+-..+
T Consensus 335 ~~~~~-----~~L~Wrsr~~n~~-~~Wyf~~s~G~~~~~ 367 (398)
T PRK04531 335 MREET-----PQLFWRSRHNNTI-NKFYYAESDGCIKQE 367 (398)
T ss_pred HHhhC-----CceEEEcCCCCCc-cceeeecccceEecC
Confidence 76543 4677888877753 3455 345554433
No 392
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=20.02 E-value=69 Score=16.82 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=12.7
Q ss_pred CChhHHHHHHHcCCeEee
Q 047740 115 LRTPAVNLYKKFGFQVDT 132 (154)
Q Consensus 115 ~n~~a~~~y~~~Gf~~~~ 132 (154)
+.....+|.+++||.-..
T Consensus 47 S~sti~Rf~kkLG~~gf~ 64 (77)
T PF01418_consen 47 SPSTIVRFCKKLGFSGFK 64 (77)
T ss_dssp -HHHHHHHHHHCTTTCHH
T ss_pred CHHHHHHHHHHhCCCCHH
Confidence 445678999999996443
Done!