BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047742
         (91 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
 pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
          Length = 319

 Score = 31.6 bits (70), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 1   IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLI---SEKTPPLFRRVRIEEYFRSRYA 57
           + HR +      R S+A+ Y+   D  +YPAP+L+   +E+   ++ +   ++Y +    
Sbjct: 232 VXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAG 291

Query: 58  LK 59
           LK
Sbjct: 292 LK 293


>pdb|2QYG|A Chain A, Crystal Structure Of A Rubisco-Like Protein Rlp2 From
          Rhodopseudomonas Palustris
 pdb|2QYG|B Chain B, Crystal Structure Of A Rubisco-Like Protein Rlp2 From
          Rhodopseudomonas Palustris
 pdb|2QYG|C Chain C, Crystal Structure Of A Rubisco-Like Protein Rlp2 From
          Rhodopseudomonas Palustris
 pdb|2QYG|D Chain D, Crystal Structure Of A Rubisco-Like Protein Rlp2 From
          Rhodopseudomonas Palustris
          Length = 452

 Score = 27.7 bits (60), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 31 APSLISEKTPPLFRRVRIEEYFRSRYALK 59
          A  L SE++   +RRV  +E FR R+A K
Sbjct: 58 AAHLCSEQSTAQWRRVGFDEDFRPRFAAK 86


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,243,604
Number of Sequences: 62578
Number of extensions: 69341
Number of successful extensions: 124
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 3
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)