Query 047742
Match_columns 91
No_of_seqs 177 out of 1045
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 02:41:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02216 protein SRG1 99.7 1.4E-17 3.1E-22 126.0 6.1 67 1-67 287-357 (357)
2 PLN02947 oxidoreductase 99.7 1.6E-17 3.4E-22 126.7 5.6 67 1-67 301-371 (374)
3 PLN02904 oxidoreductase 99.7 1.7E-17 3.7E-22 125.7 5.4 68 1-68 284-355 (357)
4 PLN02254 gibberellin 3-beta-di 99.7 5.9E-17 1.3E-21 122.9 6.2 69 1-69 287-356 (358)
5 PLN02758 oxidoreductase, 2OG-F 99.7 6.5E-17 1.4E-21 122.6 6.1 58 1-58 289-346 (361)
6 PLN02639 oxidoreductase, 2OG-F 99.7 6.7E-17 1.4E-21 121.4 5.7 58 1-58 267-324 (337)
7 PLN02156 gibberellin 2-beta-di 99.7 2.5E-16 5.4E-21 118.6 6.8 72 1-72 257-331 (335)
8 PLN02393 leucoanthocyanidin di 99.6 1.7E-16 3.6E-21 120.4 5.4 66 1-66 290-359 (362)
9 PLN03001 oxidoreductase, 2OG-F 99.6 3E-16 6.6E-21 114.8 6.3 58 1-58 192-249 (262)
10 PLN02750 oxidoreductase, 2OG-F 99.6 3.3E-16 7.2E-21 117.9 6.6 73 1-80 271-344 (345)
11 PLN02276 gibberellin 20-oxidas 99.6 1.8E-16 3.9E-21 120.2 5.1 67 1-67 282-352 (361)
12 PLN03178 leucoanthocyanidin di 99.6 2.6E-16 5.5E-21 119.2 5.1 67 1-67 287-358 (360)
13 PLN02912 oxidoreductase, 2OG-F 99.6 3.1E-16 6.6E-21 118.5 5.5 67 1-67 273-345 (348)
14 PLN02299 1-aminocyclopropane-1 99.6 4.1E-16 9E-21 116.7 5.7 67 1-67 235-308 (321)
15 PLN02704 flavonol synthase 99.6 5.9E-16 1.3E-20 116.2 6.3 57 1-57 275-331 (335)
16 PLN02365 2-oxoglutarate-depend 99.6 6E-16 1.3E-20 114.7 5.9 58 1-58 228-285 (300)
17 PLN02997 flavonol synthase 99.6 1.7E-15 3.7E-20 113.6 6.3 57 1-57 259-315 (325)
18 PLN03002 oxidoreductase, 2OG-F 99.6 4.3E-15 9.2E-20 111.5 6.4 57 1-58 264-320 (332)
19 PLN02485 oxidoreductase 99.6 5.1E-15 1.1E-19 110.7 6.0 58 1-58 266-325 (329)
20 PLN02515 naringenin,2-oxogluta 99.6 9.7E-15 2.1E-19 110.8 7.0 57 1-58 273-329 (358)
21 KOG0143 Iron/ascorbate family 99.5 7.1E-15 1.5E-19 110.3 5.9 57 1-58 254-310 (322)
22 PTZ00273 oxidase reductase; Pr 99.5 1.6E-14 3.5E-19 107.5 6.3 57 1-58 255-311 (320)
23 PLN00417 oxidoreductase, 2OG-F 99.5 6.2E-14 1.3E-18 106.0 5.8 54 1-54 280-333 (348)
24 PLN02403 aminocyclopropanecarb 99.3 1.2E-12 2.6E-17 97.6 5.3 61 1-68 231-297 (303)
25 PLN02984 oxidoreductase, 2OG-F 99.2 4.6E-11 1E-15 90.3 5.9 48 1-58 276-324 (341)
26 COG3491 PcbC Isopenicillin N s 98.8 1.3E-08 2.7E-13 76.6 5.2 45 2-46 252-297 (322)
27 PF13608 Potyvirid-P3: Protein 34.5 35 0.00075 27.1 2.4 27 41-81 417-443 (445)
28 PF11202 PRTase_1: Phosphoribo 22.9 43 0.00092 25.0 1.0 14 74-87 115-128 (257)
29 PF03293 Pox_RNA_pol: Poxvirus 22.3 62 0.0013 22.3 1.6 21 69-89 69-90 (160)
No 1
>PLN02216 protein SRG1
Probab=99.71 E-value=1.4e-17 Score=126.02 Aligned_cols=67 Identities=43% Similarity=0.618 Sum_probs=60.6
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHhc----cccccceee
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYAL----KASISLIRI 67 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~----~~~l~~~r~ 67 (91)
++|||++++.++|||||||++|+.|++|+|+++|+++++|++|++++++||+..++.+ +..|+.+++
T Consensus 287 ~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~~~~~ 357 (357)
T PLN02216 287 IEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDGKAYLDAMRI 357 (357)
T ss_pred cCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCcCHHHHHHHHHhcccCCcchhhhhcC
Confidence 5799999999999999999999999999999999999999999999999999988876 566666553
No 2
>PLN02947 oxidoreductase
Probab=99.70 E-value=1.6e-17 Score=126.69 Aligned_cols=67 Identities=28% Similarity=0.429 Sum_probs=60.7
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHhc----cccccceee
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYAL----KASISLIRI 67 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~----~~~l~~~r~ 67 (91)
++|||++++.++|||||||++|+.|++|+|+++|+++++|++|++++++||+..+.++ ++.|+.+|+
T Consensus 301 ~~HRVv~~~~~~R~Sia~F~~P~~d~~i~Pl~~lv~~~~p~~Y~~~~~~ey~~~~~~~~~~~~~~l~~~~~ 371 (374)
T PLN02947 301 VLHRVRVNSTKPRISVASLHSLPFERVVGPAPELVDEQNPRRYMDTDFATFLAYLASAEGKHKNFLESRKL 371 (374)
T ss_pred cccccccCCCCCEEEEEEEecCCCCCEEeCChHhcCCCCCCcCCCCCHHHHHHHHHHhccCchhhhhhhhc
Confidence 5899999999999999999999999999999999999999999999999999988766 566766653
No 3
>PLN02904 oxidoreductase
Probab=99.70 E-value=1.7e-17 Score=125.70 Aligned_cols=68 Identities=25% Similarity=0.413 Sum_probs=61.1
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHhc----cccccceeec
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYAL----KASISLIRIT 68 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~----~~~l~~~r~~ 68 (91)
++|||++++.++|||||||+.|+.|++|+|+++|+++++|++|++++|+||+..++++ +..++.++++
T Consensus 284 t~HRVv~~~~~~R~Si~~F~~p~~d~~i~Pl~~~v~~~~p~~Y~~~~~~ey~~~~~~~~~~~~~~~~~~~~~ 355 (357)
T PLN02904 284 VVHRVTVNKDYKRLSFASLHSLPLHKKISPAPELVNENKPAAYGEFSFNDFLDYISSNDITQERFIDTLKKN 355 (357)
T ss_pred cCCcccCCCCCCEEEEEEeecCCCCCeEeCCHHHcCCCCCCcCCCCCHHHHHHHHHhcccCcchHHHHhccC
Confidence 5799999988999999999999999999999999999999999999999999998887 5556665543
No 4
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=99.68 E-value=5.9e-17 Score=122.87 Aligned_cols=69 Identities=38% Similarity=0.614 Sum_probs=61.6
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHhc-cccccceeecc
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYAL-KASISLIRITK 69 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~-~~~l~~~r~~~ 69 (91)
++|||+++..++|||||||+.|+.|++|+|+++|+++++|++|++++++||+..++.. -..++.+++-+
T Consensus 287 ~~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~~lv~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~~~~ 356 (358)
T PLN02254 287 VLHRAVVNKTRHRISVAYFYGPPSDVQISPLPKLVDPNHPPLYRSVTWKEYLATKAKHFNKALSLIRNCN 356 (358)
T ss_pred ccceeecCCCCCEEEEEEEecCCCCcEEeCcHHhcCCCCCcccCCcCHHHHHHHHHHhhhhhhhhhhccC
Confidence 5899999999999999999999999999999999999999999999999999988877 33666666543
No 5
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.68 E-value=6.5e-17 Score=122.62 Aligned_cols=58 Identities=38% Similarity=0.616 Sum_probs=55.3
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHhc
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYAL 58 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~ 58 (91)
++|||++++.++|||+|||+.|+.|++|+|+++|+++++|++|++++++||+..++++
T Consensus 289 ~~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~elv~~~~p~~Y~~~~~~ey~~~~~~~ 346 (361)
T PLN02758 289 VEHRAVTNKEKDRLSIVTFYAPSYEVELGPMPELVDDENPCKYRRYNHGEYSRHYVTS 346 (361)
T ss_pred ccceeecCCCCCEEEEEEEecCCCCCeEeCCHHHcCCCCCCcCCCccHHHHHHHHHhc
Confidence 4799999988999999999999999999999999999999999999999999988876
No 6
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.67 E-value=6.7e-17 Score=121.40 Aligned_cols=58 Identities=33% Similarity=0.495 Sum_probs=55.1
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHhc
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYAL 58 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~ 58 (91)
++|||++++.++|||+|||+.|+.|++|.|+++|+++++|++|++++++||+..++.+
T Consensus 267 t~HRVv~~~~~~R~Sia~F~~p~~d~~i~pl~~~~~~~~p~~y~p~~~~e~~~~~~~~ 324 (337)
T PLN02639 267 VWHRAVVNTDKERMSVASFLCPCDDAVISPAKKLTDDGTAAVYRDFTYAEYYKKFWSR 324 (337)
T ss_pred cCcccccCCCCCEEEEEEEecCCCCceEeCchHHcCCCCCCCCCCCCHHHHHHHHHhc
Confidence 4799999988999999999999999999999999999999999999999999988875
No 7
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=99.65 E-value=2.5e-16 Score=118.62 Aligned_cols=72 Identities=19% Similarity=0.330 Sum_probs=61.1
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHhc---cccccceeeccCCC
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYAL---KASISLIRITKEFG 72 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~---~~~l~~~r~~~~~~ 72 (91)
+.|||+++..++|||||||+.|+.|++|+|+++|+++++|++|++++++||+..++.+ ...+..+..+.+.+
T Consensus 257 t~HRVv~~~~~~R~SiafF~~P~~d~~i~pl~~~v~~~~p~~y~p~~~~ey~~~~~~~~~~~~~~~~~~~~~~~~ 331 (335)
T PLN02156 257 VKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDDCLYNEFTWSQYKLSAYKTKLGDYRLGLFEKQPPFS 331 (335)
T ss_pred cceeeecCCCCCEEEEEEeecCCCCCEEeCChHhcCCCCCccCCCccHHHHHHHHHhccCCCccchhhhccCCcc
Confidence 4799999988999999999999999999999999999999999999999999998877 33344444444433
No 8
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=99.65 E-value=1.7e-16 Score=120.37 Aligned_cols=66 Identities=29% Similarity=0.478 Sum_probs=58.2
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHhc----ccccccee
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYAL----KASISLIR 66 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~----~~~l~~~r 66 (91)
++|||+++..++|||||||+.|+.|++|+|+++|+++++|++|++++++||+..+.++ .+.++.+|
T Consensus 290 t~HRVv~~~~~~R~SiafF~~P~~d~~i~pl~~~v~~~~p~~y~~~~~~ey~~~~~~~~~~~~~~~~~~~ 359 (362)
T PLN02393 290 VEHRVIVNSAKERVSLAFFYNPKSDLPIEPLKELVTPDRPALYPPMTFDEYRLFIRTKGPRGKSQVESLK 359 (362)
T ss_pred cceecccCCCCCEEEEEEEecCCCCceEeCcHHhcCCCCCCCCCCccHHHHHHHHHhcccCcchHHhhhc
Confidence 4799999988999999999999999999999999999999999999999999877755 44444444
No 9
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.64 E-value=3e-16 Score=114.76 Aligned_cols=58 Identities=34% Similarity=0.492 Sum_probs=54.8
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHhc
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYAL 58 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~ 58 (91)
++|||+++..++|||||||+.|+.|++|+|+++|+++++|++|++++++||+..++.+
T Consensus 192 ~~HRVv~~~~~~R~Sia~F~~p~~d~~i~p~~e~v~~~~p~~y~~~~~~e~l~~~~~~ 249 (262)
T PLN03001 192 AQHRAIANANKARLSVATFHDPAKTAKIAPASALSTESFPPRYCEIVYGEYVSSWYSK 249 (262)
T ss_pred ccceEEcCCCCCEEEEEEEEcCCCCCEEeCChHhcCCCCCCcCCCccHHHHHHHHHHh
Confidence 4799999988999999999999999999999999999999999999999999888775
No 10
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.64 E-value=3.3e-16 Score=117.94 Aligned_cols=73 Identities=27% Similarity=0.430 Sum_probs=61.3
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHhc-cccccceeeccCCCceeeeee
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYAL-KASISLIRITKEFGTKTLKQL 79 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~-~~~l~~~r~~~~~~~~~~~~~ 79 (91)
++|||+++..++|||||||+.|+.|++|+|+++|+++++|++|++++++||+..++.. ...+ ....++|.||
T Consensus 271 t~HRVv~~~~~~R~Si~~F~~P~~d~~i~pl~~~v~~~~p~~y~p~~~~e~~~~~~~~~~~~~-------~~~~~~~~~~ 343 (345)
T PLN02750 271 AEHRVVVNSQKERFSIPFFFFPSHYVNIKPLDELINEQNPPKYKEFNWGKFFASRNRSDYKKL-------EVENIQIDHF 343 (345)
T ss_pred ccceeccCCCCCEEEEEEeecCCCCCeecCcHHhcCCCCCCccCCccHHHHHHHHHhcccccc-------cccceeeecc
Confidence 4799999988999999999999999999999999999999999999999999877655 2211 2233777777
Q ss_pred e
Q 047742 80 A 80 (91)
Q Consensus 80 ~ 80 (91)
.
T Consensus 344 ~ 344 (345)
T PLN02750 344 K 344 (345)
T ss_pred c
Confidence 4
No 11
>PLN02276 gibberellin 20-oxidase
Probab=99.64 E-value=1.8e-16 Score=120.16 Aligned_cols=67 Identities=24% Similarity=0.256 Sum_probs=60.0
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHhc----cccccceee
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYAL----KASISLIRI 67 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~----~~~l~~~r~ 67 (91)
++|||+++..++|||||||+.|+.|+.|+|+++|+++++|++|++++++||++.+.++ ++.|+.+++
T Consensus 282 t~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~~~ey~~~~~~~~~~~~~~l~~~~~ 352 (361)
T PLN02276 282 CLHRAVVNSERERRSLAFFLCPKEDKVVRPPQELVDREGPRKYPDFTWSDLLEFTQKHYRADMNTLQAFSN 352 (361)
T ss_pred ccceeecCCCCCEEEEEEEecCCCCCEEeCChHhcCCCCCCcCCCCCHHHHHHHHHHhcccchhHHHHHHH
Confidence 4799999988999999999999999999999999999999999999999999987766 455666554
No 12
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=99.63 E-value=2.6e-16 Score=119.21 Aligned_cols=67 Identities=25% Similarity=0.333 Sum_probs=58.9
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCce-EecCCCCcCCCCCCCCccccHHHHHHHHHhc----cccccceee
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGE-VYPAPSLISEKTPPLFRRVRIEEYFRSRYAL----KASISLIRI 67 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~-I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~----~~~l~~~r~ 67 (91)
++|||++++..+|||||||+.|+.|+. +.|+++|+++++|++|++++++||+..++.+ ++.++..+|
T Consensus 287 t~HRVv~~~~~~R~Si~~F~~P~~d~~v~~pl~~~v~~~~p~~y~p~~~~eyl~~~~~~~~~~~~~~~~~~~ 358 (360)
T PLN03178 287 ILHRGLVNKEKVRISWAVFCEPPKEKIILKPLPELVSKEEPPKFPPRTFGQHVSHKLFKKPQDERNIDAADI 358 (360)
T ss_pred ccceeecCCCCCeEEEEEEecCCcccccccCcHHHcCCCCcccCCCccHHHHHHHHHhcccCcchhHhHHhc
Confidence 479999988889999999999999975 5999999999999999999999999988876 566666554
No 13
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.63 E-value=3.1e-16 Score=118.48 Aligned_cols=67 Identities=33% Similarity=0.534 Sum_probs=58.6
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCC--CCCCCccccHHHHHHHHHhc----cccccceee
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEK--TPPLFRRVRIEEYFRSRYAL----KASISLIRI 67 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~--~p~~Y~~~t~~eyl~~~~~~----~~~l~~~r~ 67 (91)
++|||++++.++|||||||+.|+.|+.|+|+++|++++ +|++|++++|+||+..++.+ ++.|+.+|.
T Consensus 273 t~HRVv~~~~~~R~Sia~F~~p~~d~~i~pl~~~v~~~~~~p~~y~~~~~~ey~~~~~~~~~~~~~~l~~~~~ 345 (348)
T PLN02912 273 VLHRAVVNTDKERISIPTFYCPSEDAVIGPAQELINEEEDSLAIYRNFTYAEYFEKFWDTAFATESCIDSFKA 345 (348)
T ss_pred ccccccCCCCCCEEEEEEEecCCCCCeEeCCHHHhCcCCCCCCCCCCCcHHHHHHHHHhcccCCcchhhhhhc
Confidence 47999999889999999999999999999999999875 58999999999999988876 555665553
No 14
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=99.63 E-value=4.1e-16 Score=116.68 Aligned_cols=67 Identities=24% Similarity=0.521 Sum_probs=59.6
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCC--CCCCCccccHHHHHHHHHhc-----cccccceee
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEK--TPPLFRRVRIEEYFRSRYAL-----KASISLIRI 67 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~--~p~~Y~~~t~~eyl~~~~~~-----~~~l~~~r~ 67 (91)
+.|||+++...+|||||||+.|+.|++|+|+++|++++ +|++|++++++||+..++++ +..|+.+++
T Consensus 235 ~~HRVv~~~~~~R~Si~~F~~p~~d~~i~pl~~~v~~~~~~p~~y~p~~~~e~l~~~~~~~~~~~~~~~~~~~~ 308 (321)
T PLN02299 235 VMHRVVAQTDGNRMSIASFYNPGSDAVIYPAPALVEKEAEEEQVYPKFVFEDYMKLYAGLKFQAKEPRFEAMKA 308 (321)
T ss_pred ccceeecCCCCCEEEEEEEecCCCCceEeCchHhcCcccCCCcCCCCCcHHHHHHHHHHcccCCccchhhhhhc
Confidence 47999999888999999999999999999999999875 58999999999999998876 355777766
No 15
>PLN02704 flavonol synthase
Probab=99.62 E-value=5.9e-16 Score=116.19 Aligned_cols=57 Identities=28% Similarity=0.475 Sum_probs=53.9
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHh
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYA 57 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~ 57 (91)
++|||+++...+|||||||+.|+.|++|+|+++|+++++|++|++++++||+..++.
T Consensus 275 t~HRVv~~~~~~R~Si~~F~~p~~d~~i~pl~~~~~~~~p~~Y~~~~~~e~~~~~~~ 331 (335)
T PLN02704 275 VLHRTTVNKEKTRMSWPVFLEPPSELAVGPLPKLINEDNPPKFKTKKFKDYVYCKLN 331 (335)
T ss_pred ccceeecCCCCCeEEEEEEecCCCCceEeCChHhcCCCCCccCCCCCHHHHHHHHHh
Confidence 479999998899999999999999999999999999999999999999999987765
No 16
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=99.62 E-value=6e-16 Score=114.70 Aligned_cols=58 Identities=22% Similarity=0.424 Sum_probs=54.7
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHhc
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYAL 58 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~ 58 (91)
++|||++++..+|||||||++|+.|++|+|+++|+++++|++|++++++||+..++..
T Consensus 228 t~HRVv~~~~~~R~Si~~F~~p~~d~~i~p~~~~v~~~~p~~y~~~~~~e~~~~~~~~ 285 (300)
T PLN02365 228 VKHRVQCKEATMRISIASFLLGPKDDDVEAPPEFVDAEHPRLYKPFTYEDYRKLRLST 285 (300)
T ss_pred ccceeEcCCCCCEEEEEEEecCCCCCeEeCCHHHcCCCCCccCCCccHHHHHHHHHhc
Confidence 4799999888899999999999999999999999999999999999999999988766
No 17
>PLN02997 flavonol synthase
Probab=99.60 E-value=1.7e-15 Score=113.62 Aligned_cols=57 Identities=26% Similarity=0.422 Sum_probs=53.7
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHh
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYA 57 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~ 57 (91)
++|||+++...+|||||||+.|+.|++|+|+++|+++++|++|++++++||+..++.
T Consensus 259 t~HRVv~~~~~~R~Si~fF~~P~~d~~i~Plp~~v~~~~p~~y~~~~~~e~l~~r~~ 315 (325)
T PLN02997 259 VLHRAKTDKERLRISWPVFVAPRADMSVGPLPELTGDENPPKFETLIYNDYIDQKIR 315 (325)
T ss_pred ccceeeCCCCCCEEEEEEEecCCCCCeEeCChHHcCCCCCCcCCCccHHHHHHHHHh
Confidence 479999988889999999999999999999999999999999999999999988765
No 18
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.57 E-value=4.3e-15 Score=111.53 Aligned_cols=57 Identities=28% Similarity=0.327 Sum_probs=52.7
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHhc
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYAL 58 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~ 58 (91)
++|||+++. .+|||||||+.|+.|++|+|+++|+++++|++|++++++||+..++..
T Consensus 264 t~HRVv~~~-~~R~Sia~F~~p~~d~~i~pl~~~~~~~~p~~y~~~~~~e~l~~~~~~ 320 (332)
T PLN03002 264 TLHRVLGNG-QERYSIPFFVEPNHDCLVECLPTCKSESDLPKYPPIKCSTYLTQRYEE 320 (332)
T ss_pred cCCeecCCC-CCeeEEEEEecCCCCeeEecCCcccCCCCcccCCCccHHHHHHHHHHH
Confidence 479998764 689999999999999999999999999999999999999999988765
No 19
>PLN02485 oxidoreductase
Probab=99.56 E-value=5.1e-15 Score=110.66 Aligned_cols=58 Identities=26% Similarity=0.307 Sum_probs=53.3
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcC--CCCCCCCccccHHHHHHHHHhc
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLIS--EKTPPLFRRVRIEEYFRSRYAL 58 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~--~~~p~~Y~~~t~~eyl~~~~~~ 58 (91)
++|||+++...+|||||||+.|+.|++|+|+++|++ +++|++|++++++||+..++.+
T Consensus 266 t~HRVv~~~~~~R~Si~~F~~p~~d~~i~pl~~~~~~~~~~~~~y~~~t~~e~~~~~~~~ 325 (329)
T PLN02485 266 TLHRVINNSPKYRVCVAFFYETNFDAAVEPLDICKEKRTGGSQVFKRVVYGEHLVNKVLT 325 (329)
T ss_pred CCceecCCCCCCeEEEEEEecCCCCceeecchhhcccccCCCCCCCcEeHHHHHHHHHHH
Confidence 479999988889999999999999999999999998 6789999999999999987654
No 20
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=99.55 E-value=9.7e-15 Score=110.80 Aligned_cols=57 Identities=33% Similarity=0.440 Sum_probs=52.8
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHhc
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYAL 58 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~ 58 (91)
++|||+++...+|||||||+.|+.|++|+|++ ++++++|++|++++++||+..++.+
T Consensus 273 t~HRVv~~~~~~R~Si~~F~~P~~d~~i~Pl~-~~~~~~p~~y~~~t~~eyl~~~~~~ 329 (358)
T PLN02515 273 ADHQAVVNSNCSRLSIATFQNPAPDATVYPLK-VREGEKPILEEPITFAEMYRRKMSR 329 (358)
T ss_pred ecceEECCCCCCEEEEEEEecCCCCCEEECCC-cCCCCCCCcCCCcCHHHHHHHHHhc
Confidence 47999999889999999999999999999997 6777889999999999999998877
No 21
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=99.55 E-value=7.1e-15 Score=110.30 Aligned_cols=57 Identities=30% Similarity=0.483 Sum_probs=54.0
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHhc
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYAL 58 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~ 58 (91)
++|||++|..++|||+|+|++|..|.+|+|++++++++ |++|+++++.+|+..+..+
T Consensus 254 v~HRV~~n~~~~R~Sia~F~~p~~d~~i~p~~elv~~~-~~~Y~~~~~~~y~~~~~~~ 310 (322)
T KOG0143|consen 254 VLHRVVVNGEKERISVAFFVFPPLDKVIGPPEELVDEE-PPKYKPFTFGDYLEFYFSK 310 (322)
T ss_pred eEEEEEeCCCCceEEEEEEecCCCCceecChhhhCCCC-CCccCcEEHHHHHHHHHhc
Confidence 58999999999999999999999999999999999988 8889999999999998877
No 22
>PTZ00273 oxidase reductase; Provisional
Probab=99.53 E-value=1.6e-14 Score=107.51 Aligned_cols=57 Identities=25% Similarity=0.264 Sum_probs=52.2
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHhc
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYAL 58 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~ 58 (91)
++|||++ ...+|||||||+.|+.|++|+|+++|+++++|++|++++++||+..++..
T Consensus 255 t~HRVv~-~~~~R~Si~~F~~p~~d~~i~pl~~~~~~~~~~~y~~~~~~e~~~~~~~~ 311 (320)
T PTZ00273 255 TPHRVVN-TGVERYSMPFFCEPNPNVIIKCLDNCHSEENPPKYPPVRAVDWLLKRFAE 311 (320)
T ss_pred CCccccC-CCCCeEEEEEEEcCCCCceEecCccccCCCCcccCCceeHHHHHHHHHHH
Confidence 4799974 46789999999999999999999999999999999999999999988765
No 23
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.47 E-value=6.2e-14 Score=105.97 Aligned_cols=54 Identities=35% Similarity=0.394 Sum_probs=48.4
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHH
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRS 54 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~ 54 (91)
++|||+++...+|||||||+.|+.|++|+|+++|+++++|++|++++.+++...
T Consensus 280 t~HRVv~~~~~~R~Si~fF~~P~~d~~i~pl~~~v~~~~p~~Y~~~~~~~~~~~ 333 (348)
T PLN00417 280 PVHRVVTNREKERISVATFCIPGADKEIQPVDGLVSEARPRLYKTVKKYVELFF 333 (348)
T ss_pred cceEEecCCCCCEEEEEEEecCCCCceecCchHhcCCCCCCCCCCHHHHHHHHH
Confidence 479999988889999999999999999999999999999999999995554433
No 24
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=99.35 E-value=1.2e-12 Score=97.55 Aligned_cols=61 Identities=25% Similarity=0.373 Sum_probs=51.1
Q ss_pred CcceeeeCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCc-cccHHHHHHHHHhc-----cccccceeec
Q 047742 1 IEHRAVVNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFR-RVRIEEYFRSRYAL-----KASISLIRIT 68 (91)
Q Consensus 1 v~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~-~~t~~eyl~~~~~~-----~~~l~~~r~~ 68 (91)
++|||+++..++|||+|||+.|+.|++|.|+++++. + +++++||+..+... ++.++.+++.
T Consensus 231 ~~HRVv~~~~~~R~Si~~F~~p~~d~~i~pl~~~~~-------~~~~~~~eyl~~~~~~~~~~~~~~~~~~~~~ 297 (303)
T PLN02403 231 TLHRVMADKNGSRLSIATFYNPAGDAIISPAPKLLY-------PSNYRFQDYLKLYSTTKFGDKGPRFESMKKM 297 (303)
T ss_pred ccceeecCCCCCEEEEEEEEcCCCCCeEeCchhhCC-------CCCccHHHHHHHHHHhccccccchHHHhhhh
Confidence 479999998889999999999999999999999863 4 49999999988763 5556666653
No 25
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.17 E-value=4.6e-11 Score=90.32 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=42.0
Q ss_pred Ccceee-eCCCCCeEEEEeeecCCCCceEecCCCCcCCCCCCCCccccHHHHHHHHHhc
Q 047742 1 IEHRAV-VNSVQERLSVATAYSLRYDGEVYPAPSLISEKTPPLFRRVRIEEYFRSRYAL 58 (91)
Q Consensus 1 v~HRVv-~~~~~~R~Sia~F~~P~~d~~I~Plpelv~~~~p~~Y~~~t~~eyl~~~~~~ 58 (91)
++|||+ .+..++|||+|||+.|+.|++|+| ++|++++++||+..++..
T Consensus 276 t~HRVv~~~~~~~R~Sia~F~~P~~d~~i~p----------~~y~p~t~~e~l~~~~~~ 324 (341)
T PLN02984 276 VLHRVGKRNKKKERYSICYFVFPEEDCVIKS----------SKYKPFTYSDFEAQVQLD 324 (341)
T ss_pred CCCccccCCCCCCeEEEEEEecCCCCCEEcc----------CCcCcccHHHHHHHHHhh
Confidence 479995 466788999999999999999974 689999999999987755
No 26
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=98.76 E-value=1.3e-08 Score=76.63 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=39.1
Q ss_pred cceeeeCCCCCeEEEEeeecCCCCceEecCC-CCcCCCCCCCCccc
Q 047742 2 EHRAVVNSVQERLSVATAYSLRYDGEVYPAP-SLISEKTPPLFRRV 46 (91)
Q Consensus 2 ~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plp-elv~~~~p~~Y~~~ 46 (91)
.|||++|+..+|||||||+.|+.|+.|.|+. .+.+.+.++++.+-
T Consensus 252 ~HRV~~~~~~~R~SipfF~~p~~Da~I~Pl~~l~~~~a~~~~~~~t 297 (322)
T COG3491 252 VHRVRNPPGVDRYSIPFFLEPNFDAEIAPLLPLCPEAANEPRGPGT 297 (322)
T ss_pred cceeecCCCccceeeeeeccCCCCccccccCCCCcccccCCcCCCC
Confidence 6999999989999999999999999999866 45566777888775
No 27
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=34.46 E-value=35 Score=27.13 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=20.1
Q ss_pred CCCccccHHHHHHHHHhccccccceeeccCCCceeeeeeee
Q 047742 41 PLFRRVRIEEYFRSRYALKASISLIRITKEFGTKTLKQLAI 81 (91)
Q Consensus 41 ~~Y~~~t~~eyl~~~~~~~~~l~~~r~~~~~~~~~~~~~~~ 81 (91)
....+.||++|+..++.+. -||+||++
T Consensus 417 ~~~~d~TFe~WW~~Ql~~n--------------rtipHYRt 443 (445)
T PF13608_consen 417 SSSFDVTFEDWWDNQLQQN--------------RTIPHYRT 443 (445)
T ss_pred CCCCCCCHHHHHHHHHHcC--------------CccCCCCC
Confidence 3567899999999877653 46777765
No 28
>PF11202 PRTase_1: Phosphoribosyl transferase (PRTase); InterPro: IPR011215 This is a family of uncharacterised bacterial proteins.
Probab=22.90 E-value=43 Score=25.02 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=12.5
Q ss_pred eeeeeeeeeeeecc
Q 047742 74 KTLKQLAIKIVRGT 87 (91)
Q Consensus 74 ~~~~~~~~~~~~~~ 87 (91)
...+||+|-|+||+
T Consensus 115 ~~~~HYsISIIRdR 128 (257)
T PF11202_consen 115 LDLPHYSISIIRDR 128 (257)
T ss_pred CCCCceeEEEecCC
Confidence 57899999999996
No 29
>PF03293 Pox_RNA_pol: Poxvirus DNA-directed RNA polymerase, 18 kD subunit; InterPro: IPR004973 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The Poxvirus DNA-directed RNA polymerase (2.7.7.6 from EC) catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. The enzyme consists of at least eight subunits, this is the 18 kDa subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0019083 viral transcription
Probab=22.28 E-value=62 Score=22.27 Aligned_cols=21 Identities=38% Similarity=0.338 Sum_probs=17.0
Q ss_pred cCCCceeeeeeeee-eeecccc
Q 047742 69 KEFGTKTLKQLAIK-IVRGTEN 89 (91)
Q Consensus 69 ~~~~~~~~~~~~~~-~~~~~~~ 89 (91)
..++..|-|+|+++ +|+||-|
T Consensus 69 ~VPC~vtykyYk~GDvV~GtLn 90 (160)
T PF03293_consen 69 KVPCNVTYKYYKVGDVVRGTLN 90 (160)
T ss_pred EeeeEEEEEEEeeCCEEEEEEE
Confidence 45677899999997 7899865
Done!