BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047744
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 26/145 (17%)
Query: 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMS 63
G LEV+LV+A+G++ + YV C Q+ +S + G WNE FIF
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 64 DWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIE 123
T +K +I D ++ T+ VGE L + + S
Sbjct: 70 ----TTELKAKIFDKDVGTEDDAVGEATIP--------------LEPVFVEGS------- 104
Query: 124 VKPAPYNVLLEDDTYKGQIVIGFKF 148
+ P YNV ++D+ YKG+I + F
Sbjct: 105 IPPTAYNV-VKDEEYKGEIWVALSF 128
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 10/101 (9%)
Query: 5 ILEVLLVNAEGIKHTNIFGTPSYYV-IARCGNQEHR-----SKNSMVKGEKAWWNEKFIF 58
IL V +V+ + +IFG YV ++ E+R ++ K WNE+F F
Sbjct: 22 ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 59 EFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQT 99
S+ +LL F + D LT F+G+ H T
Sbjct: 82 RVNPSNHRLL----FEVFDENRLTRDDFLGQVDVPLSHLPT 118
>pdb|3TH1|A Chain A, Crystal Structure Of Chlorocatechol 1,2-Dioxygenase From
Pseudomonas Putida
pdb|3TH1|B Chain B, Crystal Structure Of Chlorocatechol 1,2-Dioxygenase From
Pseudomonas Putida
pdb|3TH1|C Chain C, Crystal Structure Of Chlorocatechol 1,2-Dioxygenase From
Pseudomonas Putida
Length = 260
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 91 VFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT 137
++S IHD V+ YY G ++TD + + P PY + E T
Sbjct: 129 LYSGIHDNIPVD---YYRGKLVTDSQGNYRVRTTMPVPYQIPYEGPT 172
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDW 65
+ + +V A+G++ + G+ YV + G + R+K ++ W E F FE S
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTK-TIYGNLNPVWEENFHFECHNSS- 76
Query: 66 KLLTHIKFRIMDTE 79
IK R++D +
Sbjct: 77 ---DRIKVRVLDED 87
>pdb|3EO2|A Chain A, Crystal Structure Of The Rhogef Domain Of Human
Neuroepithelial Cell- Transforming Gene 1 Protein
Length = 231
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 57 IFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGI 111
+ ++P+ ++L H D +LL D + + V S I+ + ++C+YY+ +
Sbjct: 173 LVKYPLLLKEILKHTPKEHPDVQLLEDAILIIQGVLSDINLKKGESECQYYIDKL 227
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 68 LTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRY 106
L + F + D LT+ G+VGE V + I Q + +C Y
Sbjct: 74 LLDVPFTMADATTLTEAGYVGEDVENII--QKLLQKCDY 110
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 68 LTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRY 106
L + F + D LT+ G+VGE V + I Q + +C Y
Sbjct: 74 LLDVPFTMADATTLTEAGYVGEDVENII--QKLLQKCDY 110
>pdb|1RKY|A Chain A, Pplo + Xe
pdb|1W7C|A Chain A, Pplo At 1.23 Angstroms
Length = 747
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 8 VLLVNAEGIKHTNIFGTPSYYVIARCGNQEHR-SKNSMVKGEKAWWNEKFIF 58
+LL+ E + TN FG P Y I G HR KNS E W +F
Sbjct: 554 ILLI--ESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLF 603
>pdb|1N9E|A Chain A, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|B Chain B, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|C Chain C, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
pdb|1N9E|D Chain D, Crystal Structure Of Pichia Pastoris Lysyl Oxidase Pplo
Length = 787
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 8 VLLVNAEGIKHTNIFGTPSYYVIARCGNQEHR-SKNSMVKGEKAWWNEKFIF 58
+LL+ E + TN FG P Y I G HR KNS E W +F
Sbjct: 594 ILLI--ESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLF 643
>pdb|3PR4|A Chain A, Dpo4 Y12a Mutant Incorporating Dadp Opposite Template Dt
pdb|3PR5|B Chain B, Dpo4 Y12a Mutant Incorporating Adp Opposite Template Dt
Length = 341
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 85 GFVGETVFSYI-------HDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT 137
G +GE Y+ +++ + R +G I+T + N + L E+KP + +E+
Sbjct: 215 GMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRA-IEESY 273
Query: 138 YK 139
YK
Sbjct: 274 YK 275
>pdb|3V6K|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6K|J Chain J, Replication Of N2,3-Ethenoguanine By Dna Polymerases
Length = 347
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 85 GFVGETVFSYI-------HDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT 137
G +GE Y+ +++ + R +G I+T + N + L E+KP + +E+
Sbjct: 220 GMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRA-IEESY 278
Query: 138 YK 139
YK
Sbjct: 279 YK 280
>pdb|2AGO|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide
Selection And Pyrophosphorolysis
pdb|2AGP|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide
Selection And Pyrophosphorolysis
pdb|2AGP|B Chain B, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide
Selection And Pyrophosphorolysis
pdb|2AGQ|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide
Selection And Pyrophosphorolysis
pdb|3T5H|A Chain A, Ternary Complex Of Hne Adduct Modified Dna (5'-Cxg-3' Vs
13-Mer) With Dpo4 And Incoming Ddgt
pdb|3T5J|A Chain A, Ternary Complex Of Hne Adduct Modified Dna (5'-Txg-3' Vs
13-Mer) With Dpo4 And Incoming Ddtp
pdb|3T5K|A Chain A, Ternary Complex Of Hne Adduct Modified Dna (5'-Txg-3' Vs
14-Mer) With Dpo4 And Incoming Ddtp
pdb|3T5L|A Chain A, Ternary Complex Of Hne Adduct Modified Dna (5'-Cxg-3' Vs
14-Mer) With Dpo4 And Incoming Ddgt
Length = 341
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 85 GFVGETVFSYI-------HDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT 137
G +GE Y+ +++ + R +G I+T + N + L E+KP + +E+
Sbjct: 215 GMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRA-IEESY 273
Query: 138 YK 139
YK
Sbjct: 274 YK 275
>pdb|3V6H|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6H|B Chain B, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6J|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6J|J Chain J, Replication Of N2,3-Ethenoguanine By Dna Polymerases
Length = 348
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 85 GFVGETVFSYI-------HDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT 137
G +GE Y+ +++ + R +G I+T + N + L E+KP + +E+
Sbjct: 221 GMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRA-IEESY 279
Query: 138 YK 139
YK
Sbjct: 280 YK 281
>pdb|3PVX|A Chain A, Binary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-Fapy) With Dna Polymerase Iv
pdb|3PW0|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-Fapy) With Dna Polymerase Iv And Incoming Datp
pdb|3PW2|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-Fapy) With Dna Polymerase Iv And Incoming Dttp
pdb|3PW4|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-N7-Gua) With Dna Polymerase Iv And Incoming Datp
pdb|3PW5|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-N7-Gua) With Dna Polymerase Iv And Incoming Dttp
pdb|3PW7|A Chain A, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-N7-Gua) With Dna Polymerase Iv And Incoming Dctp
pdb|3PW7|E Chain E, Ternary Complex Of Aflatoxin B1 Adduct Modified Dna
(Afb1-N7-Gua) With Dna Polymerase Iv And Incoming Dctp
Length = 347
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 85 GFVGETVFSYI-------HDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT 137
G +GE Y+ +++ + R +G I+T + N + L E+KP + +E+
Sbjct: 221 GMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRA-IEESY 279
Query: 138 YK 139
YK
Sbjct: 280 YK 281
>pdb|2IMW|P Chain P, Mechanism Of Template-Independent Nucleotide Incorporation
Catalyzed By A Template-Dependent Dna Polymerase
Length = 348
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 85 GFVGETVFSYI-------HDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT 137
G +GE Y+ +++ + R +G I+T + N + L E+KP + +E+
Sbjct: 215 GMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRA-IEESY 273
Query: 138 YK 139
YK
Sbjct: 274 YK 275
>pdb|2RDI|A Chain A, Snapshots Of A Y-family Dna Polymerase In Replication:
Dpo4 In Apo And Binary/ternary Complex Forms
Length = 342
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 85 GFVGETVFSYI-------HDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT 137
G +GE Y+ +++ + R +G I+T + N + L E+KP + +E+
Sbjct: 215 GMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRA-IEESY 273
Query: 138 YK 139
YK
Sbjct: 274 YK 275
>pdb|3GII|A Chain A, Dpo4 Extension Ternary Complex With Disordered A Opposite
An Oxog In Anti Conformation
pdb|3GIJ|A Chain A, Dpo4 Extension Ternary Complex With Oxog(Syn)-A(Anti) And
Oxog(Anti)- A(Syn) Pairs
pdb|3GIJ|B Chain B, Dpo4 Extension Ternary Complex With Oxog(Syn)-A(Anti) And
Oxog(Anti)- A(Syn) Pairs
pdb|3GIK|A Chain A, Dpo4 Extension Ternary Complex With The Oxog(Anti)-C(Anti)
Pair
pdb|3GIL|A Chain A, Dpo4 Extension Ternary Complex With Oxog(Anti)-T(Anti)
Pair
pdb|3GIL|B Chain B, Dpo4 Extension Ternary Complex With Oxog(Anti)-T(Anti)
Pair
pdb|3GIM|A Chain A, Dpo4 Extension Ternary Complex With Oxog(Anti)-G(Syn) Pair
pdb|3KHG|A Chain A, Dpo4 Extension Ternary Complex With Misinserted A Opposite
The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHG|B Chain B, Dpo4 Extension Ternary Complex With Misinserted A Opposite
The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHH|A Chain A, Dpo4 Extension Ternary Complex With A C Base Opposite The
2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHH|B Chain B, Dpo4 Extension Ternary Complex With A C Base Opposite The
2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHL|A Chain A, Dpo4 Post-Extension Ternary Complex With Misinserted A
Opposite The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHL|B Chain B, Dpo4 Post-Extension Ternary Complex With Misinserted A
Opposite The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHR|A Chain A, Dpo4 Post-Extension Ternary Complex With The Correct C
Opposite The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3KHR|B Chain B, Dpo4 Post-Extension Ternary Complex With The Correct C
Opposite The 2- Aminofluorene-Guanine [af]g Lesion
pdb|3RAQ|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer C
Base Opposite The 1-Methylguanine (Mg1) Lesion
pdb|3RAQ|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer C
Base Opposite The 1-Methylguanine (Mg1) Lesion
pdb|3RAX|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer T
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RAX|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer T
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RB0|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer G
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RB0|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer G
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RB3|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer A
Base Opposite The 1-Methylguanine (M1g) Lesion
pdb|3RB4|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer G
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RB4|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer G
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RB6|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer A
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RB6|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer A
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RBD|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer C
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RBD|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer C
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RBE|A Chain A, Dpo4 Extension Ternary Complex With 3'-Terminal Primer T
Base Opposite The 3-Methylcytosine (M3c) Lesion
pdb|3RBE|B Chain B, Dpo4 Extension Ternary Complex With 3'-Terminal Primer T
Base Opposite The 3-Methylcytosine (M3c) Lesion
Length = 341
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 85 GFVGETVFSYI-------HDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT 137
G +GE Y+ +++ + R +G I+T + N + L E+KP + +E+
Sbjct: 215 GMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRA-IEESY 273
Query: 138 YK 139
YK
Sbjct: 274 YK 275
>pdb|2ASD|A Chain A, Oxog-Modified Insertion Ternary Complex
pdb|2ASD|B Chain B, Oxog-Modified Insertion Ternary Complex
pdb|2ASJ|A Chain A, Oxog-Modified Preinsertion Binary Complex
pdb|2ASJ|B Chain B, Oxog-Modified Preinsertion Binary Complex
pdb|2ASL|A Chain A, Oxog-Modified Postinsertion Binary Complex
pdb|2ASL|B Chain B, Oxog-Modified Postinsertion Binary Complex
pdb|2ATL|A Chain A, Unmodified Insertion Ternary Complex
pdb|2ATL|B Chain B, Unmodified Insertion Ternary Complex
pdb|2AU0|A Chain A, Unmodified Preinsertion Binary Complex
pdb|2AU0|B Chain B, Unmodified Preinsertion Binary Complex
Length = 360
Score = 25.8 bits (55), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 85 GFVGETVFSYI-------HDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT 137
G +GE Y+ +++ + R +G I+T + N + L E+KP + +E+
Sbjct: 223 GMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRA-IEESY 281
Query: 138 YK 139
YK
Sbjct: 282 YK 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,753,010
Number of Sequences: 62578
Number of extensions: 189584
Number of successful extensions: 426
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 31
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)