BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047744
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0JBH9|ERG3_ORYSJ Elicitor-responsive protein 3 OS=Oryza sativa subsp. japonica
GN=ERG3 PE=2 SV=1
Length = 144
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 26/148 (17%)
Query: 1 MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
M G LEVLLV A+G+++T+ Y + +C +QE +S + KG WNE F+F
Sbjct: 1 MVQGTLEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSDPEWNETFMFSV 60
Query: 61 PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKE 120
+ T + ++MD++ TD FVGE S L I T+ S
Sbjct: 61 THN----ATELIIKLMDSDSGTDDDFVGEATIS--------------LEAIYTEGS---- 98
Query: 121 LIEVKPAPYNVLLEDDTYKGQIVIGFKF 148
+ P YNV+ E++ Y+G+I +G F
Sbjct: 99 ---IPPTVYNVVKEEE-YRGEIKVGLTF 122
>sp|Q25AG5|ERG3_ORYSI Elicitor-responsive protein 3 OS=Oryza sativa subsp. indica GN=ERG3
PE=2 SV=1
Length = 144
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 26/148 (17%)
Query: 1 MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
M G LEVLLV A+G+++T+ Y + +C +QE +S + KG WNE F+F
Sbjct: 1 MVQGTLEVLLVGAKGLENTDYLCNMDPYAVLKCRSQEQKSSVASGKGSDPEWNETFMFSV 60
Query: 61 PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKE 120
+ T + ++MD++ TD FVGE S L I T+ S
Sbjct: 61 THN----ATELIIKLMDSDSGTDDDFVGEATIS--------------LEAIYTEGS---- 98
Query: 121 LIEVKPAPYNVLLEDDTYKGQIVIGFKF 148
+ P YNV+ E++ Y+G+I +G F
Sbjct: 99 ---IPPTVYNVVKEEE-YRGEIKVGLTF 122
>sp|Q9C8S6|Y1322_ARATH C2 domain-containing protein At1g63220 OS=Arabidopsis thaliana
GN=At1g63220 PE=1 SV=1
Length = 147
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 26/148 (17%)
Query: 1 MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
M G LEV+LV+A+G++ + YV C Q+ +S + G WNE FIF
Sbjct: 1 MPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTV 60
Query: 61 PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKE 120
T +K +I D ++ T+ VGE L + + S
Sbjct: 61 SEG----TTELKAKIFDKDVGTEDDAVGEATIP--------------LEPVFVEGS---- 98
Query: 121 LIEVKPAPYNVLLEDDTYKGQIVIGFKF 148
+ P YNV ++D+ YKG+I + F
Sbjct: 99 ---IPPTAYNV-VKDEEYKGEIWVALSF 122
>sp|Q0JHU5|ERG1_ORYSJ Elicitor-responsive protein 1 OS=Oryza sativa subsp. japonica
GN=ERG1 PE=2 SV=1
Length = 159
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 18/151 (11%)
Query: 4 GILEVLLVNAEGIKHTNIFGTPSY---YVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
G+LEV LV+A+G+ + G YV+ + +QE +S + +G+ WNE F F+
Sbjct: 5 GVLEVHLVDAKGLTGNDFLGEIGKIDPYVVVQYRSQERKSSVARDQGKNPSWNEVFKFQI 64
Query: 61 PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKE 120
+ + R+MD + + F+GE + + D S+ +
Sbjct: 65 NSTAATGQHKLFLRLMDHDTFSRDDFLGEATIN-VTDLISLGM--------------EHG 109
Query: 121 LIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN 151
E+ + + V+L D TY G+I + F +
Sbjct: 110 TWEMSESKHRVVLADKTYHGEIRVSLTFTAS 140
>sp|A2WWV5|ERG1_ORYSI Elicitor-responsive protein 1 OS=Oryza sativa subsp. indica GN=ERG1
PE=2 SV=2
Length = 159
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 18/151 (11%)
Query: 4 GILEVLLVNAEGIKHTNIFGTPSY---YVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
G+LEV LV+A+G+ + G YV+ + +QE +S + +G+ WNE F F+
Sbjct: 5 GVLEVHLVDAKGLTGNDFLGEIGKIDPYVVVQYRSQERKSSVARDQGKNPSWNEVFKFQI 64
Query: 61 PMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKE 120
+ + R+MD + + F+GE + + D S+ +
Sbjct: 65 NSTAATGQHKLFLRLMDHDTFSRDDFLGEATIN-VTDLISLGM--------------EHG 109
Query: 121 LIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN 151
E+ + + V+L D TY G+I + F +
Sbjct: 110 TWEMSESKHRVVLADKTYHGEIRVSLTFTAS 140
>sp|Q9ZT47|PP16A_CUCMA 16 kDa phloem protein 1 OS=Cucurbita maxima GN=PP16-1 PE=1 SV=3
Length = 150
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 20/151 (13%)
Query: 1 MKGGILEVLLVNAEGIKHTNIFGTP-SYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIF- 58
M G++EV L++ +G++ + P Y QE SK + G W+EKF F
Sbjct: 1 MGMGMMEVHLISGKGLQAHDPLNKPIDPYAEINFKGQERMSKVAKNAGPNPLWDEKFKFL 60
Query: 59 -EFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN 117
E+P S HI F++MD + + ++G+ ++ G+ +S
Sbjct: 61 AEYPGSGGDF--HILFKVMDHDAIDGDDYIGDV---------KIDVKNLLAEGVRKGKS- 108
Query: 118 DKELIEVKPAPYNVLLEDDTYKGQIVIGFKF 148
E+ P Y+VL +KG+I +G F
Sbjct: 109 -----EMPPRMYHVLAHKIHFKGEIEVGVSF 134
>sp|Q9ZT46|PP16B_CUCMA 16 kDa phloem protein 2 OS=Cucurbita maxima GN=PP16-2 PE=1 SV=3
Length = 138
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 20/151 (13%)
Query: 1 MKGGILEVLLVNAEGIKHTNIFGTP-SYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIF- 58
M G++EV L++ +G++ + P Y QE SK + G WNEKF F
Sbjct: 1 MGMGMMEVHLISGKGLQAHDPLNKPIDPYAEINFKGQERMSKVAKNAGPDPIWNEKFKFL 60
Query: 59 -EFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN 117
E+P S HI F++MD + + ++G+ ++ G+ S
Sbjct: 61 VEYPGSGGDF--HILFKVMDHDAIDGDDYIGD---------VKIDVQNLLAEGVRKGWS- 108
Query: 118 DKELIEVKPAPYNVLLEDDTYKGQIVIGFKF 148
E+ P Y VL +KG+I +G F
Sbjct: 109 -----ELPPRMYQVLAHKIYFKGEIEVGVFF 134
>sp|Q5BDP1|RSP5_EMENI E3 ubiquitin-protein ligase RSP5 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=hulA PE=1 SV=1
Length = 821
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKF 56
L V ++ A+G+ ++F P + +A G ++ + + + K +WNE F
Sbjct: 11 LRVTIIAADGLYKRDVFRLPDPFAVATVGGEQTHTTSVIKKTLNPYWNEMF 61
>sp|A2QQ28|RSP5_ASPNC Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=hulA PE=3 SV=1
Length = 821
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKF 56
L V ++ A+G+ ++F P + +A G ++ + + + K +WNE F
Sbjct: 11 LRVTIIAADGLYKRDVFRFPDPFAVATVGGEQTHTTSVIKKTLNPYWNEMF 61
>sp|B8N7E5|RSP5_ASPFN Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus flavus
(strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM
12722 / SRRC 167) GN=hulA PE=3 SV=1
Length = 812
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKF 56
L V ++ A+G+ ++F P + +A G ++ + + + K +WNE F
Sbjct: 8 LRVTIIAADGLYKRDVFRFPDPFAVATVGGEQTHTTSVIKKTLNPYWNEMF 58
>sp|Q2UBP1|RSP5_ASPOR Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=hulA PE=3 SV=2
Length = 816
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKF 56
L V ++ A+G+ ++F P + +A G ++ + + + K +WNE F
Sbjct: 11 LRVTIIAADGLYKRDVFRFPDPFAVATVGGEQTHTTSVIKKTLNPYWNEMF 61
>sp|Q0CCL1|RSP5_ASPTN Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=hulA PE=3 SV=1
Length = 808
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKF 56
L V ++ A+G+ ++F P + +A G ++ + + + K +WNE F
Sbjct: 11 LRVTIIAADGLYKRDVFRFPDPFAVATVGGEQTHTTSVIKKTLNPYWNEMF 61
>sp|Q8K0T7|UN13C_MOUSE Protein unc-13 homolog C OS=Mus musculus GN=Unc13c PE=1 SV=3
Length = 2210
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 8 VLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSD--- 64
+ +V+A+G++ + G+ YV + G + R+K ++ W+EKF FE S
Sbjct: 1220 ITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTK-TIFGNLNPVWDEKFFFECHNSTDRI 1278
Query: 65 ----WKLLTHIKFRIMDTELLTDGGFVGETV 91
W IK R+ F+G+T+
Sbjct: 1279 KVRVWDEDDDIKSRVKQHFKKESDDFLGQTI 1309
>sp|D5G4B1|KEX1_TUBMM Pheromone-processing carboxypeptidase KEX1 OS=Tuber melanosporum
(strain Mel28) GN=KEX1 PE=3 SV=1
Length = 625
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 87 VGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPA 127
V +F D + RY LGG+ D+S+D+ IE +P+
Sbjct: 583 VASPMFERDRDLEAAEARRYSLGGVSDDESDDEGRIEKRPS 623
>sp|A1CQG2|RSP5_ASPCL Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=hulA PE=3 SV=2
Length = 815
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKF 56
L + ++ A+G+ ++F P + +A G ++ ++ + + K +WNE F
Sbjct: 11 LRLTIIAADGLYKRDVFRFPDPFAVATVGGEQTQTTSVIKKTLNPYWNEMF 61
>sp|A1D3C5|RSP5_NEOFI Probable E3 ubiquitin-protein ligase hulA OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=hulA PE=3 SV=1
Length = 816
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKF 56
L + ++ A+G+ ++F P + +A G ++ + + + K +WNE F
Sbjct: 11 LRLTIIAADGLYKRDVFRFPDPFAVATVGGEQTHTTSVIKKTLNPYWNEMF 61
>sp|Q8NB66|UN13C_HUMAN Protein unc-13 homolog C OS=Homo sapiens GN=UNC13C PE=2 SV=3
Length = 2214
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 8 VLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSD--- 64
+ +V+A+G++ + G+ YV + G + R+K ++ W+EKF FE S
Sbjct: 1224 ITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTK-TIFGNLNPVWDEKFYFECHNSTDRI 1282
Query: 65 ----WKLLTHIKFRIMDTELLTDGGFVGETV 91
W IK R+ F+G+T+
Sbjct: 1283 KVRVWDEDDDIKSRVKQHFKKESDDFLGQTI 1313
>sp|Q62770|UN13C_RAT Protein unc-13 homolog C OS=Rattus norvegicus GN=Unc13c PE=1 SV=3
Length = 2204
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 8 VLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSD--- 64
+ +V+A+G++ + G+ YV + G + R+K ++ W+EKF FE S
Sbjct: 1214 ITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTK-TIFGNLNPVWDEKFYFECHNSTDRI 1272
Query: 65 ----WKLLTHIKFRIMDTELLTDGGFVGETV 91
W IK R+ F+G+T+
Sbjct: 1273 KVRVWDEDDDIKSRVKQHFKKESDDFLGQTI 1303
>sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo
sapiens GN=MCTP1 PE=2 SV=2
Length = 999
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEF 60
GI+ + L+ +K + G YV R G+Q+++SK M K W E+F F
Sbjct: 470 GIVSITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSK-IMPKTLNPQWREQFDFHL 525
>sp|Q64NW3|CLPX_BACFR ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bacteroides
fragilis (strain YCH46) GN=clpX PE=3 SV=1
Length = 415
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 68 LTHIKFRIMDTELLTDGGFVGETVFSYI 95
L H+ F I+D +LT+ G+VGE + S +
Sbjct: 136 LLHVPFTIVDATVLTEAGYVGEDIESIL 163
>sp|Q5L8L7|CLPX_BACFN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bacteroides
fragilis (strain ATCC 25285 / NCTC 9343) GN=clpX PE=3
SV=1
Length = 415
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 68 LTHIKFRIMDTELLTDGGFVGETVFSYI 95
L H+ F I+D +LT+ G+VGE + S +
Sbjct: 136 LLHVPFTIVDATVLTEAGYVGEDIESIL 163
>sp|Q8A128|CLPX_BACTN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bacteroides
thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC
10582 / E50 / VPI-5482) GN=clpX PE=3 SV=1
Length = 414
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 68 LTHIKFRIMDTELLTDGGFVGETVFSYI 95
L H+ F I+D +LT+ G+VGE + S +
Sbjct: 135 LLHVPFTIVDATVLTEAGYVGEDIESIL 162
>sp|P55972|IF2_HELPY Translation initiation factor IF-2 OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=infB PE=3 SV=1
Length = 944
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFP 61
K I EV E +H NI + VI R E+ S+NS+ + +K + IFE
Sbjct: 187 KKEISEVKKQEQEIKRHENIKRRTGFRVIKRNDEVENESENSVTESKKPTQSAAAIFEDI 246
Query: 62 MSDWK 66
+W+
Sbjct: 247 KKEWQ 251
>sp|B5Z6E6|IF2_HELPG Translation initiation factor IF-2 OS=Helicobacter pylori (strain
G27) GN=infB PE=3 SV=1
Length = 937
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFP 61
K I EV E +H NI + VI R E+ S+NS+ + +K + IFE
Sbjct: 180 KKEISEVKKQEQEIKRHENIKRRTGFRVIKRNDEVENESENSVTESKKPTQSAAAIFEDI 239
Query: 62 MSDWK 66
+W+
Sbjct: 240 KKEWQ 244
>sp|Q9VVI3|NEDD4_DROME E3 ubiquitin-protein ligase Nedd-4 OS=Drosophila melanogaster
GN=Nedd4 PE=1 SV=2
Length = 1007
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCG--NQEHRSKNSMVKGEK----AWWNEKFIFE 59
L ++++ + + +IFG YV N + + + K +K WNE+FIF
Sbjct: 72 LRIVVLTGQSLAKKDIFGASDPYVRIDLNTINGDINIDSVLTKTKKKTLNPTWNEEFIFR 131
Query: 60 FPMSDWKLLTHIKFRIMDTELLTDGGFVG 88
S+ KL+ F++ D LT F+G
Sbjct: 132 VKPSEHKLV----FQVFDENRLTRDDFLG 156
>sp|Q1CUA6|IF2_HELPH Translation initiation factor IF-2 OS=Helicobacter pylori (strain
HPAG1) GN=infB PE=3 SV=1
Length = 944
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFP 61
K I EV E +H NI + VI R E+ S+NS+ + +K + IFE
Sbjct: 187 KKEISEVKKQEQEIKRHENIKRRTGFRVIKRNDETENESENSVTESKKPTQSVAAIFEDI 246
Query: 62 MSDWK 66
+W+
Sbjct: 247 KKEWQ 251
>sp|P57548|CLPX_BUCAI ATP-dependent Clp protease ATP-binding subunit ClpX OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=clpX PE=3 SV=1
Length = 429
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 68 LTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRY 106
L + F I D LT+ G+VGE V + I Q + +C+Y
Sbjct: 140 LLDVPFTITDATTLTEAGYVGEDVENVI--QKLLQKCKY 176
>sp|B8D9Q3|CLPX_BUCA5 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain 5A)
GN=clpX PE=3 SV=1
Length = 429
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 68 LTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRY 106
L + F I D LT+ G+VGE V + I Q + +C+Y
Sbjct: 140 LLDVPFTITDATTLTEAGYVGEDVENVI--QKLLQKCKY 176
>sp|B8D805|CLPX_BUCAT ATP-dependent Clp protease ATP-binding subunit ClpX OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain Tuc7)
GN=clpX PE=3 SV=1
Length = 429
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 68 LTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRY 106
L + F I D LT+ G+VGE V + I Q + +C+Y
Sbjct: 140 LLDVPFTITDATTLTEAGYVGEDVENVI--QKLLQKCKY 176
>sp|Q8K989|CLPX_BUCAP ATP-dependent Clp protease ATP-binding subunit ClpX OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=clpX PE=3 SV=1
Length = 427
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 68 LTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRY 106
L ++ F I D LT+ G+VGE V + I Q + +C Y
Sbjct: 137 LLNVPFSIADATTLTEAGYVGEDVENVI--QKLLQKCEY 173
>sp|Q96PU5|NED4L_HUMAN E3 ubiquitin-protein ligase NEDD4-like OS=Homo sapiens GN=NEDD4L
PE=1 SV=2
Length = 975
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 5 ILEVLLVNAEGIKHTNIFGTPSYYV-IARCGNQEHR-----SKNSMVKGEKAWWNEKFIF 58
IL V +V+ + +IFG YV ++ E+R ++ K WNE+F F
Sbjct: 21 ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 80
Query: 59 EFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIH 96
S+ +LL F + D LT F+G+ H
Sbjct: 81 RVNPSNHRLL----FEVFDENRLTRDDFLGQVDVPLSH 114
>sp|Q5RBF2|NED4L_PONAB E3 ubiquitin-protein ligase NEDD4-like OS=Pongo abelii GN=NEDD4L
PE=2 SV=1
Length = 959
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 5 ILEVLLVNAEGIKHTNIFGTPSYYV-IARCGNQEHR-----SKNSMVKGEKAWWNEKFIF 58
IL V +V+ + +IFG YV ++ E+R ++ K WNE+F F
Sbjct: 25 ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 84
Query: 59 EFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIH 96
S+ +LL F + D LT F+G+ H
Sbjct: 85 RVNPSNHRLL----FEVFDENRLTRDDFLGQVDVPLSH 118
>sp|Q8IVG5|SAM9L_HUMAN Sterile alpha motif domain-containing protein 9-like OS=Homo
sapiens GN=SAMD9L PE=1 SV=2
Length = 1584
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 93 SYIHDQT-SVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLL 133
SY+ D T SV+QC +LG I T + E +E K Y+ LL
Sbjct: 930 SYVTDSTISVSQCEIFLGIIYTSTPWEPESLEDKMGTYSTLL 971
>sp|Q8CFI0|NED4L_MOUSE E3 ubiquitin-protein ligase NEDD4-like OS=Mus musculus GN=Nedd4l
PE=1 SV=2
Length = 1004
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 5 ILEVLLVNAEGIKHTNIFGTPSYYV-IARCGNQEHR-----SKNSMVKGEKAWWNEKFIF 58
IL V +V+ + +IFG YV ++ E+R ++ K WNE+F F
Sbjct: 49 ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 108
Query: 59 EFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIH 96
S+ +LL F + D LT F+G+ H
Sbjct: 109 RVNPSNHRLL----FEVFDENRLTRDDFLGQVDVPLSH 142
>sp|Q1LTK0|CLPX_BAUCH ATP-dependent Clp protease ATP-binding subunit ClpX OS=Baumannia
cicadellinicola subsp. Homalodisca coagulata GN=clpX
PE=3 SV=1
Length = 421
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 70 HIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRY 106
H+ F + D LT+ G+VGE V + +H + +C Y
Sbjct: 137 HVPFTMADATTLTEAGYVGEDVENILHQL--LQKCDY 171
>sp|Q62769|UN13B_RAT Protein unc-13 homolog B OS=Rattus norvegicus GN=Unc13b PE=1 SV=2
Length = 1622
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSD- 64
+ + +V A+G++ + G+ YV + G + R+K ++ W EKF FE S
Sbjct: 615 ITITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTK-TIFGNLNPVWEEKFHFECHNSSD 673
Query: 65 ------WKLLTHIKFRIMDTELLTDGGFVGETVF 92
W IK R+ F+G+T+
Sbjct: 674 RIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTII 707
>sp|Q9Z1N9|UN13B_MOUSE Protein unc-13 homolog B OS=Mus musculus GN=Unc13b PE=2 SV=2
Length = 1602
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSD- 64
+ + +V A+G++ + G+ YV + G + R+K ++ W EKF FE S
Sbjct: 614 ITITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTK-TIFGNLNPVWEEKFHFECHNSSD 672
Query: 65 ------WKLLTHIKFRIMDTELLTDGGFVGETVF 92
W IK R+ F+G+T+
Sbjct: 673 RIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTII 706
>sp|P11451|CLCA_PSEPU Chlorocatechol 1,2-dioxygenase OS=Pseudomonas putida GN=clcA PE=1
SV=1
Length = 260
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 91 VFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT 137
++S IHD V+ YY G ++TD + + P PY + E T
Sbjct: 129 LYSGIHDNIPVD---YYRGKLVTDSQGNYRVRTTMPVPYQIPYEGPT 172
>sp|P80200|CGA1_HELPX Cytotoxicity-associated immunodominant antigen OS=Helicobacter pylori
GN=cagA PE=1 SV=1
Length = 1147
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 19 TNIFGTPSYYVIARCGNQEHRSKNSMVKG 47
TN F T SYY +AR N EH KN KG
Sbjct: 1115 TNAFSTASYYCLAR-ENAEHGIKNVNTKG 1142
>sp|Q7MX10|CLPX_PORGI ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83)
GN=clpX PE=3 SV=1
Length = 411
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 68 LTHIKFRIMDTELLTDGGFVGETVFSYI 95
+ H+ F ++D +LT+ G+VGE + S +
Sbjct: 134 MLHVPFAVVDATVLTEAGYVGEDIESIL 161
>sp|B2RL24|CLPX_PORG3 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM
20709 / JCM 12257) GN=clpX PE=3 SV=1
Length = 411
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 68 LTHIKFRIMDTELLTDGGFVGETVFSYI 95
+ H+ F ++D +LT+ G+VGE + S +
Sbjct: 134 MLHVPFAVVDATVLTEAGYVGEDIESIL 161
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.140 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,658,385
Number of Sequences: 539616
Number of extensions: 2332585
Number of successful extensions: 4785
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 4753
Number of HSP's gapped (non-prelim): 52
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)