Query 047744
Match_columns 151
No_of_seqs 178 out of 1355
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 02:43:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 100.0 2.6E-28 5.6E-33 162.5 15.6 120 3-148 1-121 (121)
2 cd08681 C2_fungal_Inn1p-like C 99.9 3.7E-26 8.1E-31 151.6 13.3 118 4-148 1-118 (118)
3 cd04049 C2_putative_Elicitor-r 99.9 6.6E-26 1.4E-30 151.7 13.2 124 4-142 1-124 (124)
4 cd08682 C2_Rab11-FIP_classI C2 99.9 4.9E-25 1.1E-29 147.9 13.7 122 6-147 1-126 (126)
5 cd04022 C2A_MCTP_PRT_plant C2 99.9 8.4E-25 1.8E-29 147.0 14.5 125 5-149 1-126 (127)
6 KOG1030 Predicted Ca2+-depende 99.9 2E-25 4.3E-30 153.0 11.2 86 1-91 3-88 (168)
7 cd04042 C2A_MCTP_PRT C2 domain 99.9 1.5E-24 3.4E-29 144.5 14.7 120 5-150 1-121 (121)
8 cd08678 C2_C21orf25-like C2 do 99.9 1.1E-23 2.4E-28 141.3 14.6 119 6-150 1-121 (126)
9 cd08377 C2C_MCTP_PRT C2 domain 99.9 1.3E-23 2.9E-28 139.4 14.6 119 4-149 1-119 (119)
10 cd08379 C2D_MCTP_PRT_plant C2 99.9 6.9E-24 1.5E-28 142.1 13.0 116 5-144 1-125 (126)
11 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 1.1E-23 2.5E-28 142.4 14.1 121 5-149 1-133 (133)
12 cd08375 C2_Intersectin C2 doma 99.9 1.2E-23 2.6E-28 143.0 14.2 123 2-148 13-135 (136)
13 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 1.6E-23 3.4E-28 139.7 14.5 118 6-148 2-121 (121)
14 cd04044 C2A_Tricalbin-like C2 99.9 1.3E-23 2.7E-28 140.3 13.6 121 3-150 1-124 (124)
15 cd04019 C2C_MCTP_PRT_plant C2 99.9 1.7E-23 3.6E-28 144.4 14.1 128 5-149 1-132 (150)
16 cd04025 C2B_RasA1_RasA4 C2 dom 99.9 2.1E-23 4.5E-28 139.4 14.1 122 5-146 1-122 (123)
17 cd04024 C2A_Synaptotagmin-like 99.9 2.8E-23 6E-28 139.4 14.1 123 4-148 1-128 (128)
18 cd04051 C2_SRC2_like C2 domain 99.9 7.4E-24 1.6E-28 141.9 10.6 123 5-144 1-125 (125)
19 cd04046 C2_Calpain C2 domain p 99.9 9E-23 1.9E-27 137.0 15.4 124 2-151 1-124 (126)
20 cd08376 C2B_MCTP_PRT C2 domain 99.9 5.5E-23 1.2E-27 135.9 14.1 115 5-149 1-115 (116)
21 cd08677 C2A_Synaptotagmin-13 C 99.9 1.6E-23 3.4E-28 138.1 10.4 93 2-113 12-108 (118)
22 cd08400 C2_Ras_p21A1 C2 domain 99.9 2E-22 4.2E-27 135.4 15.8 120 4-150 4-124 (126)
23 cd08378 C2B_MCTP_PRT_plant C2 99.9 7.1E-23 1.5E-27 136.6 12.9 114 6-148 2-119 (121)
24 cd08381 C2B_PI3K_class_II C2 d 99.9 3.8E-23 8.3E-28 138.1 11.0 105 3-124 12-121 (122)
25 cd04054 C2A_Rasal1_RasA4 C2 do 99.9 3.4E-22 7.3E-27 133.3 15.0 119 5-147 1-120 (121)
26 cd08395 C2C_Munc13 C2 domain t 99.9 1.7E-22 3.7E-27 134.3 12.2 106 5-127 1-113 (120)
27 cd08391 C2A_C2C_Synaptotagmin_ 99.9 4.6E-22 9.9E-27 132.2 13.2 115 4-148 1-121 (121)
28 cd04036 C2_cPLA2 C2 domain pre 99.9 5E-22 1.1E-26 132.0 13.2 113 6-148 2-117 (119)
29 cd04039 C2_PSD C2 domain prese 99.9 4E-22 8.6E-27 130.5 12.0 96 4-116 1-100 (108)
30 cd04017 C2D_Ferlin C2 domain f 99.9 1.7E-21 3.7E-26 132.2 15.5 123 5-150 2-133 (135)
31 cd04015 C2_plant_PLD C2 domain 99.9 1.7E-21 3.7E-26 135.5 15.6 122 3-149 6-158 (158)
32 cd08394 C2A_Munc13 C2 domain f 99.9 5.8E-22 1.3E-26 131.9 12.2 100 4-127 2-102 (127)
33 cd04014 C2_PKC_epsilon C2 doma 99.9 2E-21 4.3E-26 131.4 15.1 116 1-149 1-129 (132)
34 cd08382 C2_Smurf-like C2 domai 99.9 1.2E-21 2.5E-26 131.0 13.7 119 6-147 2-123 (123)
35 cd04010 C2B_RasA3 C2 domain se 99.9 9.1E-22 2E-26 135.3 12.8 124 5-146 1-147 (148)
36 cd04027 C2B_Munc13 C2 domain s 99.9 2.3E-21 5.1E-26 130.3 14.1 115 5-146 2-127 (127)
37 cd08393 C2A_SLP-1_2 C2 domain 99.9 4.1E-22 8.9E-27 133.6 10.4 105 3-124 14-124 (125)
38 cd08373 C2A_Ferlin C2 domain f 99.9 2.3E-21 5.1E-26 130.1 14.1 116 10-150 2-117 (127)
39 cd04028 C2B_RIM1alpha C2 domai 99.9 9.2E-22 2E-26 134.8 12.2 106 3-128 28-140 (146)
40 cd04029 C2A_SLP-4_5 C2 domain 99.9 8.2E-22 1.8E-26 132.2 11.8 106 2-124 13-124 (125)
41 cd08386 C2A_Synaptotagmin-7 C2 99.9 1.8E-21 4E-26 130.2 12.2 109 2-126 14-125 (125)
42 cd04041 C2A_fungal C2 domain f 99.9 2.3E-21 4.9E-26 127.4 11.0 94 4-112 1-98 (111)
43 cd08688 C2_KIAA0528-like C2 do 99.9 2.8E-21 6.1E-26 126.8 10.8 103 6-124 1-107 (110)
44 cd04018 C2C_Ferlin C2 domain t 99.9 3.1E-21 6.7E-26 133.0 11.0 94 5-115 1-108 (151)
45 cd08392 C2A_SLP-3 C2 domain fi 99.9 4.5E-21 9.9E-26 129.0 11.4 95 3-113 14-114 (128)
46 cd08685 C2_RGS-like C2 domain 99.9 2.8E-21 6.1E-26 128.5 10.0 103 3-124 11-119 (119)
47 cd08387 C2A_Synaptotagmin-8 C2 99.9 5.8E-21 1.2E-25 127.7 11.6 106 3-125 15-123 (124)
48 cd08388 C2A_Synaptotagmin-4-11 99.9 6.4E-21 1.4E-25 128.3 11.8 107 3-126 15-128 (128)
49 cd04038 C2_ArfGAP C2 domain pr 99.9 3.2E-20 6.8E-25 127.3 15.3 87 3-95 1-87 (145)
50 cd08680 C2_Kibra C2 domain fou 99.9 4.2E-21 9.2E-26 128.4 10.5 97 3-115 13-115 (124)
51 cd08385 C2A_Synaptotagmin-1-5- 99.9 6.1E-21 1.3E-25 127.5 11.3 106 2-124 14-122 (124)
52 cd04050 C2B_Synaptotagmin-like 99.9 6.5E-21 1.4E-25 124.0 11.0 100 5-125 1-101 (105)
53 cd04031 C2A_RIM1alpha C2 domai 99.9 5.7E-21 1.2E-25 127.7 10.9 105 3-124 15-124 (125)
54 cd08389 C2A_Synaptotagmin-14_1 99.9 9.8E-21 2.1E-25 126.8 10.9 106 3-126 15-124 (124)
55 cd04030 C2C_KIAA1228 C2 domain 99.9 1.5E-20 3.1E-25 126.1 11.7 105 3-124 15-126 (127)
56 cd04045 C2C_Tricalbin-like C2 99.9 2.2E-20 4.8E-25 124.4 12.5 101 4-125 1-102 (120)
57 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.9 1E-20 2.2E-25 132.1 11.1 108 2-125 25-137 (162)
58 cd04032 C2_Perforin C2 domain 99.8 1.8E-20 3.8E-25 125.8 11.5 85 3-91 27-111 (127)
59 cd08390 C2A_Synaptotagmin-15-1 99.8 5E-20 1.1E-24 122.9 12.0 107 3-126 13-123 (123)
60 cd04043 C2_Munc13_fungal C2 do 99.8 1.5E-19 3.3E-24 121.0 14.4 115 5-149 2-121 (126)
61 cd08521 C2A_SLP C2 domain firs 99.8 3.2E-20 6.9E-25 123.7 10.9 106 2-124 12-123 (123)
62 cd08383 C2A_RasGAP C2 domain ( 99.8 1.6E-19 3.4E-24 119.3 13.7 115 6-148 2-117 (117)
63 cd08406 C2B_Synaptotagmin-12 C 99.8 2.8E-20 6E-25 126.4 8.8 87 3-91 14-105 (136)
64 cd04040 C2D_Tricalbin-like C2 99.8 2E-19 4.3E-24 118.6 12.1 101 6-125 1-102 (115)
65 KOG1028 Ca2+-dependent phospho 99.8 1.3E-19 2.8E-24 143.1 13.2 127 3-150 166-295 (421)
66 cd04037 C2E_Ferlin C2 domain f 99.8 1.6E-19 3.5E-24 120.9 11.5 91 5-113 1-93 (124)
67 cd08675 C2B_RasGAP C2 domain s 99.8 1.4E-19 3E-24 123.2 11.1 106 6-128 1-122 (137)
68 cd04011 C2B_Ferlin C2 domain s 99.8 2E-19 4.4E-24 118.1 11.3 91 5-114 5-96 (111)
69 cd08407 C2B_Synaptotagmin-13 C 99.8 7.9E-20 1.7E-24 124.3 8.5 88 2-91 13-107 (138)
70 cd04052 C2B_Tricalbin-like C2 99.8 4.1E-19 9E-24 116.7 11.7 102 20-150 8-110 (111)
71 cd04021 C2_E3_ubiquitin_ligase 99.8 1E-18 2.2E-23 117.1 13.3 118 4-146 2-124 (125)
72 cd08404 C2B_Synaptotagmin-4 C2 99.8 1.9E-19 4E-24 122.3 9.5 87 3-91 14-105 (136)
73 cd08402 C2B_Synaptotagmin-1 C2 99.8 2.1E-19 4.5E-24 122.0 8.8 88 2-91 13-105 (136)
74 cd08384 C2B_Rabphilin_Doc2 C2 99.8 5.5E-19 1.2E-23 119.5 10.4 87 3-91 12-103 (133)
75 cd04009 C2B_Munc13-like C2 dom 99.8 5.8E-19 1.3E-23 119.5 10.2 95 3-112 15-117 (133)
76 cd08676 C2A_Munc13-like C2 dom 99.8 9.2E-19 2E-23 120.9 11.2 100 1-124 25-153 (153)
77 PLN03200 cellulose synthase-in 99.8 2.7E-19 5.8E-24 159.0 10.5 119 3-150 1979-2101(2102)
78 cd08690 C2_Freud-1 C2 domain f 99.8 4.3E-18 9.3E-23 117.6 13.8 121 5-148 3-136 (155)
79 cd08691 C2_NEDL1-like C2 domai 99.8 6E-18 1.3E-22 114.9 14.2 116 5-146 2-136 (137)
80 cd08408 C2B_Synaptotagmin-14_1 99.8 9.1E-19 2E-23 119.2 9.9 88 2-91 13-106 (138)
81 cd04026 C2_PKC_alpha_gamma C2 99.8 1.7E-18 3.8E-23 116.7 10.7 104 3-125 12-120 (131)
82 cd08403 C2B_Synaptotagmin-3-5- 99.8 1.3E-18 2.7E-23 117.9 9.9 88 2-91 12-104 (134)
83 cd08405 C2B_Synaptotagmin-7 C2 99.8 1.1E-18 2.5E-23 118.4 9.7 87 3-91 14-105 (136)
84 cd08409 C2B_Synaptotagmin-15 C 99.8 6E-19 1.3E-23 120.0 8.1 86 3-91 14-104 (137)
85 cd08410 C2B_Synaptotagmin-17 C 99.8 1.5E-18 3.3E-23 117.7 9.9 88 2-91 12-104 (135)
86 cd04048 C2A_Copine C2 domain f 99.8 3E-18 6.5E-23 114.0 10.7 97 9-124 5-112 (120)
87 KOG0696 Serine/threonine prote 99.8 1.1E-19 2.4E-24 140.5 3.9 94 2-98 178-276 (683)
88 cd08692 C2B_Tac2-N C2 domain s 99.8 4.4E-18 9.5E-23 114.7 11.1 87 2-91 12-104 (135)
89 cd04035 C2A_Rabphilin_Doc2 C2 99.8 5.7E-18 1.2E-22 113.0 11.3 98 2-115 13-115 (123)
90 PLN03008 Phospholipase D delta 99.8 6.7E-18 1.4E-22 139.9 13.5 123 3-150 13-178 (868)
91 cd00275 C2_PLC_like C2 domain 99.8 2.3E-17 4.9E-22 110.5 13.4 115 5-148 3-127 (128)
92 cd04013 C2_SynGAP_like C2 doma 99.8 4.8E-17 1E-21 111.3 14.8 122 4-150 11-140 (146)
93 cd00276 C2B_Synaptotagmin C2 d 99.8 3.1E-18 6.8E-23 115.6 8.4 93 2-110 12-109 (134)
94 cd08686 C2_ABR C2 domain in th 99.7 4.5E-17 9.7E-22 107.2 11.8 75 6-91 1-87 (118)
95 cd04047 C2B_Copine C2 domain s 99.7 2.2E-16 4.7E-21 103.4 10.9 91 8-114 4-101 (110)
96 PF00168 C2: C2 domain; Inter 99.7 3.2E-16 6.9E-21 97.1 9.0 82 6-91 1-85 (85)
97 KOG2059 Ras GTPase-activating 99.6 8.5E-15 1.9E-19 118.5 9.2 122 3-150 4-126 (800)
98 KOG1011 Neurotransmitter relea 99.6 7.1E-15 1.5E-19 118.6 7.3 118 3-147 294-422 (1283)
99 cd08374 C2F_Ferlin C2 domain s 99.5 1.3E-13 2.8E-18 93.0 11.2 86 5-91 1-115 (133)
100 smart00239 C2 Protein kinase C 99.5 1.4E-13 3.1E-18 87.1 10.9 92 5-114 1-95 (101)
101 COG5038 Ca2+-dependent lipid-b 99.5 7.7E-14 1.7E-18 118.2 11.2 122 2-150 434-558 (1227)
102 cd00030 C2 C2 domain. The C2 d 99.5 2.8E-13 6E-18 85.3 10.5 89 6-112 1-90 (102)
103 KOG1028 Ca2+-dependent phospho 99.5 7.6E-14 1.7E-18 110.5 9.2 88 2-91 296-388 (421)
104 PLN02223 phosphoinositide phos 99.5 1.6E-12 3.4E-17 104.3 13.8 91 4-112 409-509 (537)
105 PLN02952 phosphoinositide phos 99.4 9.1E-12 2E-16 101.6 13.7 92 3-112 469-571 (599)
106 PLN02270 phospholipase D alpha 99.4 9.3E-12 2E-16 103.7 13.5 121 3-150 7-149 (808)
107 KOG0169 Phosphoinositide-speci 99.4 6.8E-12 1.5E-16 102.9 11.7 91 5-112 617-716 (746)
108 PLN02230 phosphoinositide phos 99.4 2.2E-11 4.7E-16 99.4 13.1 92 3-112 468-570 (598)
109 COG5038 Ca2+-dependent lipid-b 99.3 6.3E-12 1.4E-16 106.8 9.2 92 3-98 1039-1131(1227)
110 cd08689 C2_fungal_Pkc1p C2 dom 99.3 1.1E-11 2.5E-16 79.4 6.9 84 6-113 1-88 (109)
111 PLN02222 phosphoinositide phos 99.3 1.2E-10 2.7E-15 94.8 14.3 92 3-112 451-553 (581)
112 PLN02228 Phosphoinositide phos 99.3 1.4E-10 3.1E-15 94.2 14.1 117 4-149 431-561 (567)
113 KOG1264 Phospholipase C [Lipid 99.2 8E-11 1.7E-15 97.3 9.9 92 5-100 1066-1163(1267)
114 KOG1031 Predicted Ca2+-depende 99.2 8.1E-11 1.8E-15 94.7 7.7 123 3-148 2-135 (1169)
115 KOG2059 Ras GTPase-activating 99.2 1E-10 2.3E-15 95.3 7.5 124 10-150 137-277 (800)
116 KOG1328 Synaptic vesicle prote 99.1 3.2E-11 7E-16 98.6 2.2 88 3-91 946-1041(1103)
117 KOG1328 Synaptic vesicle prote 99.1 3.2E-11 6.8E-16 98.7 0.5 120 6-149 116-301 (1103)
118 PLN02352 phospholipase D epsil 98.9 2.4E-08 5.3E-13 83.4 12.1 116 2-150 8-131 (758)
119 KOG0905 Phosphoinositide 3-kin 98.8 7E-09 1.5E-13 88.8 4.6 109 3-127 1523-1636(1639)
120 KOG1013 Synaptic vesicle prote 98.7 2.6E-09 5.7E-14 80.6 0.2 129 3-148 92-228 (362)
121 KOG1326 Membrane-associated pr 98.6 2.2E-08 4.8E-13 84.5 3.2 87 5-95 614-702 (1105)
122 PLN02964 phosphatidylserine de 98.4 8.1E-07 1.8E-11 73.7 6.2 78 3-91 53-131 (644)
123 KOG1013 Synaptic vesicle prote 98.3 8.5E-07 1.8E-11 67.3 5.1 86 4-91 233-323 (362)
124 cd08683 C2_C2cd3 C2 domain fou 98.2 3.4E-06 7.4E-11 56.1 4.9 103 6-123 1-142 (143)
125 cd08684 C2A_Tac2-N C2 domain f 98.0 4.7E-06 1E-10 51.9 3.0 80 8-91 3-86 (103)
126 KOG1327 Copine [Signal transdu 98.0 2E-05 4.4E-10 63.6 6.7 84 11-97 143-234 (529)
127 KOG1326 Membrane-associated pr 97.9 2.3E-06 5E-11 72.7 -0.3 89 6-95 208-302 (1105)
128 KOG1265 Phospholipase C [Lipid 97.9 3.1E-05 6.6E-10 65.6 5.7 78 3-91 702-788 (1189)
129 KOG1011 Neurotransmitter relea 97.8 0.00014 3E-09 60.2 8.0 90 4-95 1125-1221(1283)
130 KOG2060 Rab3 effector RIM1 and 97.8 2.3E-05 5E-10 60.5 3.2 107 3-128 268-381 (405)
131 KOG3837 Uncharacterized conser 97.6 9.7E-05 2.1E-09 58.0 4.3 120 4-148 367-502 (523)
132 cd08398 C2_PI3K_class_I_alpha 97.5 0.0024 5.1E-08 44.4 9.8 90 4-98 8-107 (158)
133 cd08693 C2_PI3K_class_I_beta_d 97.4 0.0031 6.6E-08 44.5 9.8 93 4-99 8-122 (173)
134 PF15627 CEP76-C2: CEP76 C2 do 97.3 0.0054 1.2E-07 42.4 9.6 130 4-151 9-152 (156)
135 cd04012 C2A_PI3K_class_II C2 d 97.2 0.0032 7E-08 44.3 8.2 96 3-98 7-120 (171)
136 cd08380 C2_PI3K_like C2 domain 97.1 0.008 1.7E-07 41.5 9.4 93 4-98 8-108 (156)
137 cd08399 C2_PI3K_class_I_gamma 97.1 0.033 7.1E-07 39.5 12.6 93 4-98 10-123 (178)
138 PF10358 NT-C2: N-terminal C2 97.1 0.038 8.1E-07 37.3 13.6 119 5-149 8-135 (143)
139 cd08687 C2_PKN-like C2 domain 97.0 0.015 3.2E-07 36.6 8.8 60 23-91 7-66 (98)
140 cd08397 C2_PI3K_class_III C2 d 96.8 0.021 4.6E-07 39.7 9.0 74 24-98 29-108 (159)
141 KOG1327 Copine [Signal transdu 96.5 0.011 2.4E-07 48.3 7.0 62 38-117 43-108 (529)
142 PF12416 DUF3668: Cep120 prote 96.4 0.1 2.2E-06 40.7 11.6 122 6-149 2-132 (340)
143 PF00792 PI3K_C2: Phosphoinosi 96.3 0.072 1.6E-06 36.2 9.1 58 48-105 32-93 (142)
144 KOG1452 Predicted Rho GTPase-a 96.1 0.019 4.1E-07 44.0 5.8 79 3-87 50-131 (442)
145 smart00142 PI3K_C2 Phosphoinos 95.6 0.22 4.8E-06 31.8 8.6 73 6-79 13-91 (100)
146 PF14429 DOCK-C2: C2 domain in 94.1 0.31 6.6E-06 34.6 6.8 56 39-96 62-120 (184)
147 cd08695 C2_Dock-B C2 domains f 93.8 0.33 7.2E-06 34.7 6.5 57 38-96 55-113 (189)
148 cd08679 C2_DOCK180_related C2 93.5 0.47 1E-05 33.5 6.9 56 39-96 55-115 (178)
149 cd08694 C2_Dock-A C2 domains f 93.2 0.54 1.2E-05 33.8 6.8 58 37-96 54-115 (196)
150 PF11618 DUF3250: Protein of u 92.8 0.77 1.7E-05 29.8 6.5 97 28-148 2-104 (107)
151 PF15625 CC2D2AN-C2: CC2D2A N- 90.8 3.3 7.2E-05 28.9 8.5 63 24-91 36-100 (168)
152 cd08696 C2_Dock-C C2 domains f 89.6 2.5 5.4E-05 30.0 7.0 58 38-97 56-119 (179)
153 cd08697 C2_Dock-D C2 domains f 88.5 3.8 8.3E-05 29.3 7.4 57 37-95 57-122 (185)
154 KOG1329 Phospholipase D1 [Lipi 84.8 3 6.5E-05 36.5 6.0 73 25-115 138-211 (887)
155 KOG0694 Serine/threonine prote 83.3 0.25 5.4E-06 41.6 -0.9 62 24-90 27-88 (694)
156 PTZ00447 apical membrane antig 69.8 55 0.0012 26.1 9.9 93 25-146 74-170 (508)
157 KOG0904 Phosphatidylinositol 3 67.4 15 0.00033 32.5 5.5 71 4-78 343-421 (1076)
158 KOG2419 Phosphatidylserine dec 66.5 1.2 2.6E-05 37.7 -1.2 58 24-85 304-361 (975)
159 PF14924 DUF4497: Protein of u 61.5 36 0.00078 22.0 5.4 68 68-149 28-104 (112)
160 PF01060 DUF290: Transthyretin 53.1 24 0.00051 21.3 3.3 23 69-91 12-34 (80)
161 KOG0906 Phosphatidylinositol 3 51.0 13 0.00028 31.8 2.3 48 50-97 77-124 (843)
162 PF10409 PTEN_C2: C2 domain of 48.2 77 0.0017 20.8 11.8 87 3-91 3-91 (134)
163 PF07162 B9-C2: Ciliary basal 47.6 93 0.002 21.6 10.3 79 9-93 7-100 (168)
164 PF14909 SPATA6: Spermatogenes 43.2 1.1E+02 0.0023 21.0 9.4 80 6-91 4-93 (140)
165 KOG4269 Rac GTPase-activating 41.8 11 0.00024 33.3 0.7 67 2-79 757-828 (1112)
166 KOG3543 Ca2+-dependent activat 28.5 4.1E+02 0.0088 23.3 7.7 79 5-91 342-423 (1218)
167 KOG4028 Uncharacterized conser 24.8 2.3E+02 0.005 19.2 6.3 44 49-92 54-97 (175)
168 KOG4027 Uncharacterized conser 22.3 2.9E+02 0.0063 19.5 5.2 23 69-91 83-105 (187)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.96 E-value=2.6e-28 Score=162.50 Aligned_cols=120 Identities=16% Similarity=0.251 Sum_probs=101.4
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT 82 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~ 82 (151)
.|+|+|+|++|++++..+ .|++||||++.+++++.+|++..+++.||+|||+|.|.+... ...|.|+|||++.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~----~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG----VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC----CcEEEEEEEeCCCCc
Confidence 489999999999998887 789999999999999999998876689999999999998752 367999999999999
Q ss_pred CCcccEEEEEeccccccccceeeeecCc-ccccCCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744 83 DGGFVGETVFSYIHDQTSVNQCRYYLGG-IITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF 148 (151)
Q Consensus 83 ~d~~iG~~~~~~~~~~~~~~~~~i~l~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~ 148 (151)
+|++||.+. +++.. +...... ..|+.|.+.. .....|+|+++++|
T Consensus 76 ~dd~iG~~~--------------i~l~~~~~~g~~~-~~W~~L~~~~------~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTH--------------ITIPESVFNGETL-DDWYSLSGKQ------GEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEE--------------EECchhccCCCCc-cccEeCcCcc------CCCCceEEEEEEeC
Confidence 999999999 99974 4433334 7888886532 33467999999987
No 2
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.94 E-value=3.7e-26 Score=151.58 Aligned_cols=118 Identities=19% Similarity=0.392 Sum_probs=100.3
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD 83 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~ 83 (151)
|.|.|+|++|++|+..+..+.+||||++.++++..+|+++.+++.||.|||.|.|.+... ....|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~---~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED---KKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC---CCCEEEEEEEeCCCCC-
Confidence 689999999999999998999999999999988888888765579999999999998763 3478999999999876
Q ss_pred CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744 84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF 148 (151)
Q Consensus 84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~ 148 (151)
|++||++. +++.++...... ..|+.|. .+++..|+|.++++|
T Consensus 77 ~~~iG~~~--------------~~l~~~~~~~~~-~~w~~L~--------~~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTE--------------VDLSPALKEGEF-DDWYELT--------LKGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEE--------------EecHHHhhcCCC-CCcEEec--------cCCcEeeEEEEEEEC
Confidence 89999999 999988765444 5666553 355788999999987
No 3
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.94 E-value=6.6e-26 Score=151.69 Aligned_cols=124 Identities=42% Similarity=0.722 Sum_probs=109.7
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD 83 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~ 83 (151)
|.|.|+|++|++|+..+..+.+||||++.+.++..+|++.+.++.||.|||.|.|.+..........|.|+|||.+.+++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 68999999999999988888999999999998888888776458999999999999887521124689999999999999
Q ss_pred CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEE
Q 047744 84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQI 142 (151)
Q Consensus 84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i 142 (151)
+++||++. +++.++...+.. ++|+.|+|..|.+..+...++|||
T Consensus 81 d~~iG~~~--------------i~l~~l~~~~~~-~~~~~l~p~~~~~~~~~~~~~~~~ 124 (124)
T cd04049 81 DDFIGEAT--------------IHLKGLFEEGVE-PGTAELVPAKYNVVLEDDTYKGEI 124 (124)
T ss_pred CCeEEEEE--------------EEhHHhhhCCCC-cCceEeeccceEEEEeceEEEeEC
Confidence 99999999 999999887777 999999999999998877889986
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.93 E-value=4.9e-25 Score=147.95 Aligned_cols=122 Identities=21% Similarity=0.362 Sum_probs=99.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCC--CccccceEEEEEEECCCCCC
Q 047744 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMS--DWKLLTHIKFRIMDTELLTD 83 (151)
Q Consensus 6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~--~~~~~~~L~v~v~d~~~~~~ 83 (151)
++|+|++|++|+..+..|.+||||++.++.++.+|++.+ ++.||+|||+|.|.++.. +......|.|+|||++.+++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~-~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKE-KTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeec-CCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence 579999999999998888999999999999999998876 589999999999988762 00135689999999999999
Q ss_pred CcccEEEEEeccccccccceeeeecCcccc--cCCCcceeeeeeccccceecCCCccceEEEEEEE
Q 047744 84 GGFVGETVFSYIHDQTSVNQCRYYLGGIIT--DQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFK 147 (151)
Q Consensus 84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~ 147 (151)
|++||++. ++++++.. .... ..|+.|.+... ...+.+|+|.+.+.
T Consensus 80 d~~iG~~~--------------i~l~~l~~~~~~~~-~~W~~L~~~~~----~~~~~~Gei~l~~~ 126 (126)
T cd08682 80 DKFLGQVS--------------IPLNDLDEDKGRRR-TRWFKLESKPG----KDDKERGEIEVDIQ 126 (126)
T ss_pred CceeEEEE--------------EEHHHhhccCCCcc-cEEEECcCCCC----CCccccceEEEEeC
Confidence 99999999 99998863 2233 67888765432 24567899999873
No 5
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.93 E-value=8.4e-25 Score=146.97 Aligned_cols=125 Identities=16% Similarity=0.179 Sum_probs=101.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC-C
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT-D 83 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~-~ 83 (151)
.|.|+|++|++|+..+..+.+||||++.+++++++|++.+ ++.||.|||.|.|.+.....+....|.|+|||++.++ +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~-~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~ 79 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKP-KDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRR 79 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEc-CCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCC
Confidence 4899999999999998888999999999999999998875 6999999999999987533112467999999999887 8
Q ss_pred CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744 84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI 149 (151)
Q Consensus 84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~ 149 (151)
+++||++. ++++++...+.....|+.|+... ..++.+|+|.+.+.|+
T Consensus 80 d~~lG~v~--------------i~l~~l~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 80 RSFLGRVR--------------ISGTSFVPPSEAVVQRYPLEKRG-----LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCeeeEEE--------------EcHHHcCCCCCccceEeEeeeCC-----CCCCccEEEEEEEEEc
Confidence 99999999 99988874333225677776331 2345789999999885
No 6
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.93 E-value=2e-25 Score=152.96 Aligned_cols=86 Identities=24% Similarity=0.448 Sum_probs=81.1
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCC
Q 047744 1 MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTEL 80 (151)
Q Consensus 1 m~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~ 80 (151)
|..|.|+|.|.+|.+|..+|+.+++||||++++++++.+|+++. +++||+|||.|.|.+.. ....|.++|||+|.
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~-~n~NPeWNe~ltf~v~d----~~~~lkv~VyD~D~ 77 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVY-KNLNPEWNEELTFTVKD----PNTPLKVTVYDKDT 77 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeec-CCCCCcccceEEEEecC----CCceEEEEEEeCCC
Confidence 57899999999999999999879999999999999999999775 79999999999999998 45899999999999
Q ss_pred CCCCcccEEEE
Q 047744 81 LTDGGFVGETV 91 (151)
Q Consensus 81 ~~~d~~iG~~~ 91 (151)
+++|||||.++
T Consensus 78 fs~dD~mG~A~ 88 (168)
T KOG1030|consen 78 FSSDDFMGEAT 88 (168)
T ss_pred CCcccccceee
Confidence 99999999999
No 7
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.93 E-value=1.5e-24 Score=144.50 Aligned_cols=120 Identities=18% Similarity=0.266 Sum_probs=100.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD 83 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~ 83 (151)
.|+|+|++|++|+..+..+.+||||++.+.+ ...+|++.+ ++.||.|||.|.|.+.. ....|.|+|||++.+++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~----~~~~l~~~v~D~d~~~~ 75 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIY-KNLNPVWDEKFTLPIED----VTQPLYIKVFDYDRGLT 75 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeecc-CCCCCccceeEEEEecC----CCCeEEEEEEeCCCCCC
Confidence 3899999999999999889999999999987 456787765 69999999999999865 34789999999999999
Q ss_pred CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744 84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV 150 (151)
Q Consensus 84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~ 150 (151)
|++||++. +++.++...... +.|+.|.+.. ..+..|+|.+.++|.|
T Consensus 76 ~~~iG~~~--------------~~l~~l~~~~~~-~~~~~L~~~~------~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 76 DDFMGSAF--------------VDLSTLELNKPT-EVKLKLEDPN------SDEDLGYISLVVTLTP 121 (121)
T ss_pred CcceEEEE--------------EEHHHcCCCCCe-EEEEECCCCC------CccCceEEEEEEEECC
Confidence 99999999 999998865554 5666664331 2467899999999986
No 8
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.92 E-value=1.1e-23 Score=141.34 Aligned_cols=119 Identities=23% Similarity=0.476 Sum_probs=100.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEECC--eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGN--QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD 83 (151)
Q Consensus 6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~ 83 (151)
|.|+|++|++|+. ..+.+||||++.++. ++.+|++.+ ++.||.|||.|.|.+.. ....|.|+|||++..++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~----~~~~l~~~v~d~~~~~~ 73 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQK-NTSNPFWDEHFLFELSP----NSKELLFEVYDNGKKSD 73 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEe-cCCCCccCceEEEEeCC----CCCEEEEEEEECCCCCC
Confidence 6799999999987 568999999999973 557888776 68999999999999864 34789999999999999
Q ss_pred CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744 84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV 150 (151)
Q Consensus 84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~ 150 (151)
|++||++. +++.++...... ..|+.|++... ......|+|.+++.|++
T Consensus 74 ~~~lG~~~--------------i~l~~l~~~~~~-~~~~~L~~~~~----~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 74 SKFLGLAI--------------VPFDELRKNPSG-RQIFPLQGRPY----EGDSVSGSITVEFLFME 121 (126)
T ss_pred CceEEEEE--------------EeHHHhccCCce-eEEEEecCCCC----CCCCcceEEEEEEEEec
Confidence 99999999 999999876665 67888876643 24567999999999975
No 9
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.92 E-value=1.3e-23 Score=139.36 Aligned_cols=119 Identities=19% Similarity=0.319 Sum_probs=99.8
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD 83 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~ 83 (151)
|.|.|+|++|++|+..+..+.+||||++.+.+...+|++++ ++.||.|||+|.|.+.. ....|.|+|||++..++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~~~~~~----~~~~l~~~v~d~~~~~~ 75 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIY-KTLNPEWNKIFTFPIKD----IHDVLEVTVYDEDKDKK 75 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceec-CCcCCccCcEEEEEecC----cCCEEEEEEEECCCCCC
Confidence 78999999999999999888999999999998888898876 58999999999998864 34789999999998889
Q ss_pred CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744 84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI 149 (151)
Q Consensus 84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~ 149 (151)
+++||++. +++.++.... ..|+.|.+.. ..++.+|+|.+++.|+
T Consensus 76 ~~~iG~~~--------------~~l~~~~~~~---~~~~~l~~~~-----~~~~~~G~i~l~~~~~ 119 (119)
T cd08377 76 PEFLGKVA--------------IPLLSIKNGE---RKWYALKDKK-----LRTRAKGSILLEMDVI 119 (119)
T ss_pred CceeeEEE--------------EEHHHCCCCC---ceEEECcccC-----CCCceeeEEEEEEEeC
Confidence 99999999 8888875322 4576665432 2455799999999885
No 10
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.92 E-value=6.9e-24 Score=142.08 Aligned_cols=116 Identities=17% Similarity=0.269 Sum_probs=96.7
Q ss_pred EEEEEEEEeeC---CCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744 5 ILEVLLVNAEG---IKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL 81 (151)
Q Consensus 5 ~L~V~v~~a~~---L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~ 81 (151)
.|+|+|++|++ |+..+..|.+||||++++++++.+|+++. ++.||+|||+|.|.+... ...|.|+|||++.+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~-~~~nP~WnE~f~f~v~~~----~~~l~v~V~d~d~~ 75 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVE-DSSNPRWNEQYTWPVYDP----CTVLTVGVFDNSQS 75 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCccc-CCCCCcceeEEEEEecCC----CCEEEEEEEECCCc
Confidence 38999999999 88889899999999999999999998886 589999999999998763 35899999999887
Q ss_pred C------CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEE
Q 047744 82 T------DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVI 144 (151)
Q Consensus 82 ~------~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~ 144 (151)
+ +|++||++. ++++.+..+... ..|+.|.+... ...+..|+|..
T Consensus 76 ~~~~~~~~dd~lG~~~--------------i~l~~l~~~~~~-~~~~~L~~~~~----~~~~~~g~l~~ 125 (126)
T cd08379 76 HWKEAVQPDVLIGKVR--------------IRLSTLEDDRVY-AHSYPLLSLNP----SGVKKMGELEC 125 (126)
T ss_pred cccccCCCCceEEEEE--------------EEHHHccCCCEE-eeEEEeEeCCC----CCccCCcEEEe
Confidence 3 899999999 999998876655 67887764431 23556788864
No 11
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.92 E-value=1.1e-23 Score=142.36 Aligned_cols=121 Identities=21% Similarity=0.365 Sum_probs=97.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-------eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-------EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-------~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
.|+|+|++|++|+..+..+.+||||++.+.+. ..+|++.+ ++.||.|||+|.|.+.. ....|.|+|||
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~----~~~~l~~~v~d 75 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIK-KTLNPKWNEEFFFRVNP----REHRLLFEVFD 75 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEc-CCCCCcEeeEEEEEEcC----CCCEEEEEEEE
Confidence 48999999999999998889999999998654 45777765 69999999999999875 24679999999
Q ss_pred CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCC-----cceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744 78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN-----DKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI 149 (151)
Q Consensus 78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~ 149 (151)
++.++++++||++. +++.++...... ...|+.|++.. ..++.+|+|++++.|+
T Consensus 76 ~~~~~~~~~iG~~~--------------i~l~~l~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 76 ENRLTRDDFLGQVE--------------VPLNNLPTETPGNERRYTFKDYLLRPRS-----SKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCCCCCeeEEEE--------------EEHHHCCCcCccccccccchheeeeecC-----CCCcceeEEEEEEeeC
Confidence 99999999999999 998888754322 13455554321 2456799999999984
No 12
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.92 E-value=1.2e-23 Score=143.01 Aligned_cols=123 Identities=22% Similarity=0.343 Sum_probs=99.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL 81 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~ 81 (151)
..|.|+|+|++|++|+..+..+.+||||++.++++..+|++++ ++.||.|||+|.|.+... ....|.|+|||++.+
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~-~t~nP~Wne~f~f~v~~~---~~~~l~i~V~D~d~~ 88 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVS-DTLNPKWNSSMQFFVKDL---EQDVLCITVFDRDFF 88 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccC-CCCCCccCceEEEEecCc---cCCEEEEEEEECCCC
Confidence 3589999999999999999889999999999999999998876 699999999999998653 346899999999999
Q ss_pred CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744 82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF 148 (151)
Q Consensus 82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~ 148 (151)
++|++||++. +++.++........+... .+ ....+..+|+|.+++.|
T Consensus 89 ~~d~~lG~~~--------------i~l~~l~~~~~~~~~~~~---~~---~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 89 SPDDFLGRTE--------------IRVADILKETKESKGPIT---KR---LLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCeeEEEE--------------EEHHHhccccccCCCcEE---EE---eccccccceeEEEEEEe
Confidence 9999999999 999888753222111111 11 11256788999999987
No 13
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.92 E-value=1.6e-23 Score=139.75 Aligned_cols=118 Identities=17% Similarity=0.339 Sum_probs=98.8
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCEEEEEEECCe-eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744 6 LEVLLVNAEGIKHTN-IFGTPSYYVIARCGNQ-EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD 83 (151)
Q Consensus 6 L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~~-~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~ 83 (151)
|.|+|++|++|+..+ ..+.+||||.+.++.+ ..+|++.+ ++.||.|||+|.|.++. ....|.|.|||++.+++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~-kt~~P~WnE~F~f~v~~----~~~~l~~~v~d~~~~~~ 76 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVE-KSLCPFFGEDFYFEIPR----TFRHLSFYIYDRDVLRR 76 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEE-CCCCCccCCeEEEEcCC----CCCEEEEEEEECCCCCC
Confidence 789999999999874 3567899999999765 46777765 69999999999999975 34689999999999999
Q ss_pred CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744 84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF 148 (151)
Q Consensus 84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~ 148 (151)
|++||.+. ++++++...+.. ..|+.|+|.. ..++.+|+|+++++|
T Consensus 77 ~~~iG~~~--------------i~l~~l~~~~~~-~~w~~L~~~~-----~~~~~~G~i~l~~~~ 121 (121)
T cd08401 77 DSVIGKVA--------------IKKEDLHKYYGK-DTWFPLQPVD-----ADSEVQGKVHLELRL 121 (121)
T ss_pred CceEEEEE--------------EEHHHccCCCCc-EeeEEEEccC-----CCCcccEEEEEEEEC
Confidence 99999999 999998766655 8899998763 244568999999875
No 14
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.92 E-value=1.3e-23 Score=140.30 Aligned_cols=121 Identities=21% Similarity=0.345 Sum_probs=98.9
Q ss_pred CcEEEEEEEEeeCCCCCCC-CCCCCEEEEEEECC--eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECC
Q 047744 3 GGILEVLLVNAEGIKHTNI-FGTPSYYVIARCGN--QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTE 79 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~-~~~~dpyv~v~~~~--~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~ 79 (151)
.|.|+|+|++|++|+..+. .+.+||||++.+.+ +..+|+++. ++.||.|||.|.|.+.. ..+.|.|+|||++
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~-~~~~P~Wne~~~~~v~~----~~~~l~~~v~d~~ 75 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKK-DTSNPVWNETKYILVNS----LTEPLNLTVYDFN 75 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeec-CCCCCcceEEEEEEeCC----CCCEEEEEEEecC
Confidence 4889999999999997654 45689999999987 677888775 69999999999998874 4578999999999
Q ss_pred CCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744 80 LLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV 150 (151)
Q Consensus 80 ~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~ 150 (151)
..++|++||++. +++.++...+.. +.+ ++.+ ..+++.+|+|.++++|.|
T Consensus 76 ~~~~d~~iG~~~--------------~~l~~l~~~~~~-~~~------~~~~-~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 76 DKRKDKLIGTAE--------------FDLSSLLQNPEQ-ENL------TKNL-LRNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCCceeEEEE--------------EEHHHhccCccc-cCc------chhh-hcCCccceEEEEEEEeCC
Confidence 988999999999 999998865543 211 1112 247788999999999987
No 15
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.91 E-value=1.7e-23 Score=144.40 Aligned_cols=128 Identities=17% Similarity=0.250 Sum_probs=100.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCC
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDG 84 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d 84 (151)
.|.|+|++|++|+..+..|.+||||++.++++..+|++...++.||+|||.|.|.+... ....|.|+|||++.+++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~---~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP---FEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc---cCCeEEEEEEEecCCCCC
Confidence 38999999999999999999999999999999999998865579999999999988653 246899999999988899
Q ss_pred cccEEEEEeccccccccceeeeecCccccc---CCCcceeeeeeccccce-ecCCCccceEEEEEEEEE
Q 047744 85 GFVGETVFSYIHDQTSVNQCRYYLGGIITD---QSNDKELIEVKPAPYNV-LLEDDTYKGQIVIGFKFI 149 (151)
Q Consensus 85 ~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~---~~~~~~~~~l~~~~~~~-~~~~~~~~G~i~~~~~~~ 149 (151)
++||++. ++++++... +.....|+.|....-.. -....+.+|+|.|.+.|.
T Consensus 78 d~lG~v~--------------i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 78 EPLGRAV--------------IPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred CeEEEEE--------------EEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 9999999 888887542 12125677765432100 001246779999999885
No 16
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.91 E-value=2.1e-23 Score=139.39 Aligned_cols=122 Identities=18% Similarity=0.277 Sum_probs=102.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCC
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDG 84 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d 84 (151)
+|+|+|++|++|+..+..+.+||||++.++++..+|++++ ++.||.|||+|.|.+... ....|.|+|||++.++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~---~~~~l~~~v~d~~~~~~~ 76 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVK-KSCYPRWNEVFEFELMEG---ADSPLSVEVWDWDLVSKN 76 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeec-CCCCCccCcEEEEEcCCC---CCCEEEEEEEECCCCCCC
Confidence 4899999999999998888899999999998888998876 689999999999998763 246899999999999999
Q ss_pred cccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEE
Q 047744 85 GFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGF 146 (151)
Q Consensus 85 ~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~ 146 (151)
++||++. +++.++...+.. ..|+.|.|..-. ....++..|.|.+.+
T Consensus 77 ~~iG~~~--------------~~l~~l~~~~~~-~~w~~L~~~~~~-~~~~~~~~G~l~~~~ 122 (123)
T cd04025 77 DFLGKVV--------------FSIQTLQQAKQE-EGWFRLLPDPRA-EEESGGNLGSLRLKV 122 (123)
T ss_pred cEeEEEE--------------EEHHHcccCCCC-CCEEECCCCCCC-CccccCceEEEEEEe
Confidence 9999999 998888765555 789988876422 223577889999876
No 17
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.91 E-value=2.8e-23 Score=139.41 Aligned_cols=123 Identities=20% Similarity=0.315 Sum_probs=101.9
Q ss_pred cEEEEEEEEeeCCCCCCC--CCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744 4 GILEVLLVNAEGIKHTNI--FGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL 81 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~--~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~ 81 (151)
|.|+|+|++|++|+..+. .+.+||||++.++.+..+|++++ ++.||.|||.|.|.+... ....|.|+|||++.+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~-~t~~P~Wne~f~~~~~~~---~~~~l~i~v~d~~~~ 76 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIP-NTLNPKWNYWCEFPIFSA---QNQLLKLILWDKDRF 76 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceec-CCcCCccCCcEEEEecCC---CCCEEEEEEEECCCC
Confidence 789999999999999887 78899999999998889998876 699999999999988752 357899999999998
Q ss_pred CCCcccEEEEEeccccccccceeeeecCccccc---CCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744 82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITD---QSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF 148 (151)
Q Consensus 82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~ 148 (151)
+++++||++. +++.++... +.. ..|+.|.+..-. ......|+|.+.++|
T Consensus 77 ~~~~~lG~~~--------------i~l~~~~~~~~~~~~-~~w~~L~~~~~~---~~~~~~G~i~l~~~~ 128 (128)
T cd04024 77 AGKDYLGEFD--------------IALEEVFADGKTGQS-DKWITLKSTRPG---KTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCcceEEE--------------EEHHHhhcccccCcc-ceeEEccCcccC---ccccccceEEEEEEC
Confidence 8999999999 999888732 222 577777765321 234578999999875
No 18
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.91 E-value=7.4e-24 Score=141.90 Aligned_cols=123 Identities=17% Similarity=0.271 Sum_probs=101.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-eeeEEeeeeCCCCCCeeceEEEEEEeCCCc-cccceEEEEEEECCCCC
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-QEHRSKNSMVKGEKAWWNEKFIFEFPMSDW-KLLTHIKFRIMDTELLT 82 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~~~~nP~wne~f~f~v~~~~~-~~~~~L~v~v~d~~~~~ 82 (151)
+|+|+|++|++|+..+..+.+||||++.+.+ ++.+|++.++++.||.|||.|.|.+..... .....|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 5899999999999998889999999999987 778888776568999999999999876410 02578999999999888
Q ss_pred CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEE
Q 047744 83 DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVI 144 (151)
Q Consensus 83 ~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~ 144 (151)
.|++||++. +++.++...... ++ .+.+.+|.+..+.|+.+|+|.+
T Consensus 81 ~~~~lG~~~--------------i~l~~l~~~~~~-~~--~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVR--------------VPLKDLLDGASP-AG--ELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEE--------------EEHHHhhcccCC-CC--cceeEEEEeECCCCCcCeEEeC
Confidence 999999999 999999865543 22 3456778888778999999874
No 19
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.91 E-value=9e-23 Score=136.99 Aligned_cols=124 Identities=17% Similarity=0.201 Sum_probs=100.7
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL 81 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~ 81 (151)
+...|+|+|++|++|+..+..|.+||||++.++++..+|++.+ ++.||.|||.|.|.+.. ....|.|+|||++.+
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~----~~~~l~i~V~d~~~~ 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQK-DTLSPEFDTQAIFYRKK----PRSPIKIQVWNSNLL 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccC-CCCCCcccceEEEEecC----CCCEEEEEEEECCCC
Confidence 4578999999999999999889999999999999999998875 68999999999998765 357899999999876
Q ss_pred CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEeC
Q 047744 82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIVN 151 (151)
Q Consensus 82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~~ 151 (151)
+ |++||+++ +++.+... .. ..++.|+... ....++..|+|.+.+.+.+|
T Consensus 76 ~-d~~lG~~~--------------~~l~~~~~--~~-~~~~~l~~~~---~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 76 C-DEFLGQAT--------------LSADPNDS--QT-LRTLPLRKRG---RDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred C-CCceEEEE--------------EecccCCC--cC-ceEEEcccCC---CCCCCCCCCEEEEEEEEccc
Confidence 4 89999999 88876532 22 3455554222 23578889999999998765
No 20
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.91 E-value=5.5e-23 Score=135.94 Aligned_cols=115 Identities=18% Similarity=0.295 Sum_probs=97.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCC
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDG 84 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d 84 (151)
+|+|+|++|++|+..+..+.+||||++.++++..+|++.+ ++.||.|||+|.|.+... ....|.|+|||++.+++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~---~~~~l~v~v~d~~~~~~~ 76 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCS-KTLNPQWLEQFDLHLFDD---QSQILEIEVWDKDTGKKD 76 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEeccccc-CCCCCceeEEEEEEecCC---CCCEEEEEEEECCCCCCC
Confidence 4789999999999999888999999999998888998775 699999999999988763 357899999999999999
Q ss_pred cccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744 85 GFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI 149 (151)
Q Consensus 85 ~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~ 149 (151)
++||++. ++++++...... ..|+.|.+ .+|+|.+.+.|+
T Consensus 77 ~~iG~~~--------------~~l~~l~~~~~~-~~w~~L~~-----------~~G~~~~~~~~~ 115 (116)
T cd08376 77 EFIGRCE--------------IDLSALPREQTH-SLELELED-----------GEGSLLLLLTLT 115 (116)
T ss_pred CeEEEEE--------------EeHHHCCCCCce-EEEEEccC-----------CCcEEEEEEEec
Confidence 9999999 998888765544 55665532 159999988874
No 21
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.90 E-value=1.6e-23 Score=138.11 Aligned_cols=93 Identities=16% Similarity=0.256 Sum_probs=78.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
..+.|.|+|++|++|+ ..+.+||||++.+.. .+++|++.+ +++||+|||+|.|.++..+ +....|.|+|||
T Consensus 12 ~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~r-ktlnPvfnE~f~F~v~~~~-l~~~tL~~~V~d 86 (118)
T cd08677 12 QKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKK-LALHTQWEEELVFPLPEEE-SLDGTLTLTLRC 86 (118)
T ss_pred cCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceec-CCCCCccccEEEEeCCHHH-hCCcEEEEEEEe
Confidence 4689999999999998 246699999999853 355666654 7999999999999988744 467889999999
Q ss_pred CCCCCCCcccEEEEEeccccccccceeeeecCcccc
Q 047744 78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIIT 113 (151)
Q Consensus 78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~ 113 (151)
+|+++++++||++. ++++++..
T Consensus 87 ~Drfs~~d~IG~v~--------------l~l~~~~~ 108 (118)
T cd08677 87 CDRFSRHSTLGELR--------------LKLADVSM 108 (118)
T ss_pred CCCCCCCceEEEEE--------------EccccccC
Confidence 99999999999999 88887643
No 22
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.90 E-value=2e-22 Score=135.37 Aligned_cols=120 Identities=16% Similarity=0.254 Sum_probs=97.6
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT 82 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~ 82 (151)
..|+|+|++|++|+..+ .+||||++.+++.. .+|++ + ++.||.|||.|.|.+...+ ...+.|.|||++.++
T Consensus 4 ~~L~V~Vi~A~~L~~~~---~~DPYv~v~l~~~~~~kT~v-~-~~~nP~WnE~f~f~~~~~~---~~~l~v~v~d~~~~~ 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH---VPHPYCVISLNEVKVARTKV-R-EGPNPVWSEEFVFDDLPPD---VNSFTISLSNKAKRS 75 (126)
T ss_pred eEEEEEEEEeeCCCCCC---CCCeeEEEEECCEeEEEeec-C-CCCCCccCCEEEEecCCCC---cCEEEEEEEECCCCC
Confidence 57999999999998753 68999999998754 56665 4 4899999999999865432 257889999999999
Q ss_pred CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744 83 DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV 150 (151)
Q Consensus 83 ~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~ 150 (151)
+|++||++. +++..+...+.. +.|+.|.+..- ...+..|+|+++++|.+
T Consensus 76 ~d~~iG~v~--------------i~l~~l~~~~~~-~~W~~L~~~~~----~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 KDSEIAEVT--------------VQLSKLQNGQET-DEWYPLSSASP----LKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCCeEEEEE--------------EEHhHccCCCcc-cEeEEcccCCC----CCCCcCcEEEEEEEEEc
Confidence 999999999 999988765555 78988887531 24567799999999975
No 23
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.90 E-value=7.1e-23 Score=136.61 Aligned_cols=114 Identities=18% Similarity=0.275 Sum_probs=93.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCc
Q 047744 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGG 85 (151)
Q Consensus 6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~ 85 (151)
|.|+|++|++|+.. .+||||++.++++..+|++++ ++.||.|||+|.|.+... ....|.|+|||++.. +++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~-~t~nP~Wne~F~f~~~~~---~~~~L~~~v~d~d~~-~~~ 72 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIE-RTSNPEWNQVFAFSKDRL---QGSTLEVSVWDKDKA-KDD 72 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccC-CCCCCccceEEEEEcCCC---cCCEEEEEEEeCCCC-cCc
Confidence 88999999999887 689999999998888998875 689999999999987653 357899999999977 789
Q ss_pred ccEEEEEeccccccccceeeeecCcccccCC----CcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744 86 FVGETVFSYIHDQTSVNQCRYYLGGIITDQS----NDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF 148 (151)
Q Consensus 86 ~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~ 148 (151)
+||++. ++++++...+. ....|+.|.+.. ..+.+|+|.++++|
T Consensus 73 ~lG~~~--------------i~l~~l~~~~~~~~~~~~~W~~L~~~~------~~~~~G~i~l~~~~ 119 (121)
T cd08378 73 FLGGVC--------------FDLSEVPTRVPPDSPLAPQWYRLEDKK------GGRVGGELMLAVWF 119 (121)
T ss_pred eeeeEE--------------EEhHhCcCCCCCCCCCCcceEEccCCC------CCccceEEEEEEEe
Confidence 999999 88888864332 114677666542 24688999999998
No 24
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.90 E-value=3.8e-23 Score=138.07 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=85.8
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-----CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCG-----NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
.+.|.|.|++|++|+..+ .+.+||||++.+. ..+++|++++ ++.||.|||+|.|++...+.+....|.|+|||
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~-~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d 89 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVR-KTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWS 89 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccC-CCCCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence 478999999999999999 8899999999985 2456788775 68999999999998732222345789999999
Q ss_pred CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744 78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV 124 (151)
Q Consensus 78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l 124 (151)
++.++++++||++. ++|+++...+.. ..|+.|
T Consensus 90 ~d~~~~~~~lG~~~--------------i~l~~l~~~~~~-~~W~~L 121 (122)
T cd08381 90 HDSLVENEFLGGVC--------------IPLKKLDLSQET-EKWYPL 121 (122)
T ss_pred CCCCcCCcEEEEEE--------------EeccccccCCCc-cceEEC
Confidence 99999999999999 999988755444 566654
No 25
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.90 E-value=3.4e-22 Score=133.30 Aligned_cols=119 Identities=17% Similarity=0.353 Sum_probs=97.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD 83 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~ 83 (151)
.|.|+|++|++|+..+..|.+||||++.+++.. .+|++++ ++.||.|||.|.|.+.. ....|.|+|||++.+++
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~-~t~nP~Wne~f~~~~~~----~~~~l~v~v~d~~~~~~ 75 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVW-KTLNPFWGEEYTVHLPP----GFHTVSFYVLDEDTLSR 75 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEc-CCCCCcccceEEEeeCC----CCCEEEEEEEECCCCCC
Confidence 388999999999999999999999999998764 5787765 68999999999998865 34789999999999999
Q ss_pred CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEE
Q 047744 84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFK 147 (151)
Q Consensus 84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~ 147 (151)
|++||++. +++..+...+.....|+.|++.. ..++..|+|.+.++
T Consensus 76 d~~iG~~~--------------~~~~~~~~~~~~~~~W~~L~~~~-----~~~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVS--------------LTREVISAHPRGIDGWMNLTEVD-----PDEEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEE--------------EcHHHhccCCCCCCcEEECeeeC-----CCCccccEEEEEEE
Confidence 99999999 88777764332226788887652 35567899998875
No 26
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.89 E-value=1.7e-22 Score=134.30 Aligned_cols=106 Identities=20% Similarity=0.155 Sum_probs=85.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-------eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-------QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
.|+|+|++|++|+..+ .|.+||||++.+.+ ++.+|++. .++.||+|||+|.|.+...+.+....|.|.|||
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~-~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D 78 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSK-NNNWSPKYNETFQFILGNEDDPESYELHICVKD 78 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEe-cCCCCCccCcEEEEEeeCcCCCceeEEEEEEEE
Confidence 4899999999999887 48899999999732 23456665 578999999999999986432345679999999
Q ss_pred CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeecc
Q 047744 78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPA 127 (151)
Q Consensus 78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~ 127 (151)
++..++|++||++. +++.++...+.. ..|+.|.+.
T Consensus 79 ~d~~~~dd~IG~~~--------------l~l~~~~~~~~~-~~w~~L~~~ 113 (120)
T cd08395 79 YCFARDDRLVGVTV--------------LQLRDIAQAGSC-ACWLPLGRR 113 (120)
T ss_pred ecccCCCCEEEEEE--------------EEHHHCcCCCcE-EEEEECcCc
Confidence 99878899999999 999999876665 677777543
No 27
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.89 E-value=4.6e-22 Score=132.20 Aligned_cols=115 Identities=19% Similarity=0.330 Sum_probs=96.0
Q ss_pred cEEEEEEEEeeCCCCCCC------CCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 4 GILEVLLVNAEGIKHTNI------FGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~------~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
|.|+|+|++|++|+..+. .+.+||||++.++++..+|++++ ++.||.|||.|.|.+... ....|.|+|||
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~-~t~~P~W~e~f~~~v~~~---~~~~l~i~v~d 76 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIK-ENLNPKWNEVYEAVVDEV---PGQELEIELFD 76 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccC-CCCCCcccceEEEEeCCC---CCCEEEEEEEe
Confidence 689999999999998775 25799999999998888998875 699999999999988653 35789999999
Q ss_pred CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744 78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF 148 (151)
Q Consensus 78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~ 148 (151)
++.. ++++||++. +++.++...+.. ..|+.|++ ..+|+|.+.+.|
T Consensus 77 ~~~~-~~~~iG~~~--------------i~l~~l~~~~~~-~~w~~L~~----------~~~G~~~~~~~~ 121 (121)
T cd08391 77 EDPD-KDDFLGRLS--------------IDLGSVEKKGFI-DEWLPLED----------VKSGRLHLKLEW 121 (121)
T ss_pred cCCC-CCCcEEEEE--------------EEHHHhcccCcc-ceEEECcC----------CCCceEEEEEeC
Confidence 9987 889999999 999888765554 67776642 257999998865
No 28
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.89 E-value=5e-22 Score=132.02 Aligned_cols=113 Identities=19% Similarity=0.377 Sum_probs=91.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEECC---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGN---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT 82 (151)
Q Consensus 6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~ 82 (151)
|.|+|++|++|+..+..+.+||||++.+.+ ...+|++++ ++.||.|||+|.|.+... ....|.|+|||++.+
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~-~t~nP~Wne~f~f~i~~~---~~~~l~v~v~d~d~~- 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIK-NSINPVWNETFEFRIQSQ---VKNVLELTVMDEDYV- 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceec-CCCCCccceEEEEEeCcc---cCCEEEEEEEECCCC-
Confidence 789999999999998888999999999853 457888775 689999999999988763 346799999999988
Q ss_pred CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744 83 DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF 148 (151)
Q Consensus 83 ~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~ 148 (151)
+|++||++. ++++++...... ..|+.|.+ ..+|+|.+++.+
T Consensus 77 ~~~~iG~~~--------------~~l~~l~~g~~~-~~~~~L~~----------~~~g~l~~~~~~ 117 (119)
T cd04036 77 MDDHLGTVL--------------FDVSKLKLGEKV-RVTFSLNP----------QGKEELEVEFLL 117 (119)
T ss_pred CCcccEEEE--------------EEHHHCCCCCcE-EEEEECCC----------CCCceEEEEEEe
Confidence 899999999 999888755444 55655542 247888888765
No 29
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.89 E-value=4e-22 Score=130.46 Aligned_cols=96 Identities=14% Similarity=0.219 Sum_probs=82.3
Q ss_pred cEEEEEEEEeeCCCCCCCC----CCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECC
Q 047744 4 GILEVLLVNAEGIKHTNIF----GTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTE 79 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~----~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~ 79 (151)
|+|.|+|++|++|+..+.. +.+||||++.++.+..+|++++ ++.||+|||.|.|.+...+ ....|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~-~t~nPvWne~f~f~v~~~~--~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRR-HTLNPVFNERLAFEVYPHE--KNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeec-CCCCCcccceEEEEEeCcc--CCCEEEEEEEECC
Confidence 7899999999999987643 3489999999988888998886 6899999999999987643 3468999999999
Q ss_pred CCCCCcccEEEEEeccccccccceeeeecCcccccCC
Q 047744 80 LLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQS 116 (151)
Q Consensus 80 ~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~ 116 (151)
.+++|++||++. ++|+++.....
T Consensus 78 ~~~~dd~IG~~~--------------l~L~~l~~~~~ 100 (108)
T cd04039 78 KFSFNDYVATGS--------------LSVQELLNAAP 100 (108)
T ss_pred CCCCCcceEEEE--------------EEHHHHHhhCC
Confidence 999999999999 88888875443
No 30
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.89 E-value=1.7e-21 Score=132.24 Aligned_cols=123 Identities=13% Similarity=0.197 Sum_probs=93.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCC----Ccc--ccceEEEEEEEC
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMS----DWK--LLTHIKFRIMDT 78 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~----~~~--~~~~L~v~v~d~ 78 (151)
.|+|.|++|++|+..+..+.+||||++.+.++..+|++++ ++.||.|||.|.|.+... +.+ ....|.|+|||+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~-~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIK-ETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEc-CCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 5899999999999999999999999999999989998875 699999999999974321 000 124689999999
Q ss_pred CCCCCCcccEEEEEeccccccccceeeee-cCccccc--CCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744 79 ELLTDGGFVGETVFSYIHDQTSVNQCRYY-LGGIITD--QSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV 150 (151)
Q Consensus 79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~-l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~ 150 (151)
+..++|++||++. +. +..+... ......|+.| . ..+..+|+|.+++.+++
T Consensus 81 d~~~~d~~iG~~~--------------i~~~~~~~~~~~~~~~~~W~~L-------~-~~~~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSV--------------AKPLVKLDLEEDFPPKLQWFPI-------Y-KGGQSAGELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEE--------------eeeeeecccCCCCCCCceEEEe-------e-cCCCchhheeEEeEEEE
Confidence 9999999999998 52 2222211 1111344444 3 35668999999999986
No 31
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.89 E-value=1.7e-21 Score=135.49 Aligned_cols=122 Identities=15% Similarity=0.311 Sum_probs=97.6
Q ss_pred CcEEEEEEEEeeCCCCCCC------------------------------CCCCCEEEEEEECCee-eEEeeeeCCCCCCe
Q 047744 3 GGILEVLLVNAEGIKHTNI------------------------------FGTPSYYVIARCGNQE-HRSKNSMVKGEKAW 51 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~------------------------------~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~ 51 (151)
.|+|+|+|.+|++|++.|. .|.+||||++.+++.+ .+|++.+ ++.||+
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~-~~~nP~ 84 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIE-NSENPV 84 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeC-CCCCCc
Confidence 6999999999999998772 3568999999998765 5888775 589999
Q ss_pred eceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccce
Q 047744 52 WNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNV 131 (151)
Q Consensus 52 wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~ 131 (151)
|||+|.|.+.. ..+.|.|.|||++.++ +++||++. ++++++...... +.|+.|.....
T Consensus 85 WnE~F~~~~~~----~~~~l~~~V~d~d~~~-~~~IG~~~--------------i~l~~l~~g~~~-~~w~~L~~~~~-- 142 (158)
T cd04015 85 WNESFHIYCAH----YASHVEFTVKDNDVVG-AQLIGRAY--------------IPVEDLLSGEPV-EGWLPILDSNG-- 142 (158)
T ss_pred cceEEEEEccC----CCCEEEEEEEeCCCcC-CcEEEEEE--------------EEhHHccCCCCc-ceEEECcCCCC--
Confidence 99999998765 3468999999999875 57999999 999998865554 77877754321
Q ss_pred ecCCCccceEEEEEEEEE
Q 047744 132 LLEDDTYKGQIVIGFKFI 149 (151)
Q Consensus 132 ~~~~~~~~G~i~~~~~~~ 149 (151)
...+..|+|.++++|+
T Consensus 143 --~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 143 --KPPKPGAKIRVSLQFT 158 (158)
T ss_pred --CCCCCCCEEEEEEEEC
Confidence 1223468999999984
No 32
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.88 E-value=5.8e-22 Score=131.94 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=80.8
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD 83 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~ 83 (151)
+.|.|+|++|++|+..+ ..||||++++++++.+|++.+ +.||.|||.|.|.+... ...|.|+|||++.+ +
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~--~~nP~WnE~F~F~~~~~----~~~L~v~V~dkd~~-~ 71 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVR--GSQPCWEQDFMFEINRL----DLGLVIELWNKGLI-W 71 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECC--CCCCceeeEEEEEEcCC----CCEEEEEEEeCCCc-C
Confidence 68999999999997755 458999999999888888775 36999999999999763 35699999999855 8
Q ss_pred CcccEEEEEeccccccccceeeeecCcccccCCC-cceeeeeecc
Q 047744 84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN-DKELIEVKPA 127 (151)
Q Consensus 84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~~~l~~~ 127 (151)
||+||++. ++|+++...... ...|+.|.|.
T Consensus 72 DD~lG~v~--------------i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 72 DTLVGTVW--------------IPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred CCceEEEE--------------EEhHHcccCCCCCCCccEecChH
Confidence 99999999 999988754432 1456666543
No 33
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.88 E-value=2e-21 Score=131.36 Aligned_cols=116 Identities=16% Similarity=0.273 Sum_probs=95.9
Q ss_pred CCCcEEEEEEEEeeCCCCCCCC----------CCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccc
Q 047744 1 MKGGILEVLLVNAEGIKHTNIF----------GTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLT 69 (151)
Q Consensus 1 m~~g~L~V~v~~a~~L~~~~~~----------~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~ 69 (151)
|..|.|+|+|++|++|+..+.. +.+||||++.++++. .+|++. .++.||.|||+|.|.+.. ..
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~-~~t~~P~Wne~f~~~v~~-----~~ 74 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTK-PKTNSPVWNEEFTTEVHN-----GR 74 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEc-CCCCCCCcceeEEEEcCC-----CC
Confidence 7789999999999999988752 578999999998866 466665 469999999999999863 36
Q ss_pred eEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCccccc--CCCcceeeeeeccccceecCCCccceEEEEEEE
Q 047744 70 HIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITD--QSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFK 147 (151)
Q Consensus 70 ~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~ 147 (151)
.|.|.|||++.++++++||++. ++|+++... ... +.|+.|. ..|+|.+.++
T Consensus 75 ~l~~~v~d~~~~~~~~~iG~~~--------------i~l~~l~~~~~~~~-~~w~~L~------------~~G~l~l~~~ 127 (132)
T cd04014 75 NLELTVFHDAAIGPDDFVANCT--------------ISFEDLIQRGSGSF-DLWVDLE------------PQGKLHVKIE 127 (132)
T ss_pred EEEEEEEeCCCCCCCceEEEEE--------------EEhHHhcccCCCcc-cEEEEcc------------CCcEEEEEEE
Confidence 8999999999888999999999 999998863 333 6676663 3689999988
Q ss_pred EE
Q 047744 148 FI 149 (151)
Q Consensus 148 ~~ 149 (151)
|.
T Consensus 128 ~~ 129 (132)
T cd04014 128 LK 129 (132)
T ss_pred Ee
Confidence 74
No 34
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.88 E-value=1.2e-21 Score=131.04 Aligned_cols=119 Identities=16% Similarity=0.368 Sum_probs=96.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEEC-CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC-
Q 047744 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCG-NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD- 83 (151)
Q Consensus 6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~- 83 (151)
|+|+|++|++|+..+..+.+||||++.++ .+..+|++++ ++.||.|||+|.|.+.. ...|.|+|||++.+++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~-~t~nP~Wne~f~~~~~~-----~~~l~i~V~d~~~~~~~ 75 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAK-KTLDPKWNEHFDLTVGP-----SSIITIQVFDQKKFKKK 75 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEc-CCCCCcccceEEEEeCC-----CCEEEEEEEECCCCCCC
Confidence 78999999999999988999999999996 5667887765 68999999999999864 3689999999998875
Q ss_pred -CcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEE
Q 047744 84 -GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFK 147 (151)
Q Consensus 84 -d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~ 147 (151)
|++||++. +++.++.........|+.|++.... ..+...|+|.+.++
T Consensus 76 ~d~~lG~~~--------------i~l~~l~~~~~~~~~~~~l~~~~~~---~~~~~~G~v~~~~~ 123 (123)
T cd08382 76 DQGFLGCVR--------------IRANAVLPLKDTGYQRLDLRKLKKS---DNLSVRGKIVVSLS 123 (123)
T ss_pred CCceEeEEE--------------EEHHHccccCCCccceeEeecCCCC---CCceEeeEEEEEeC
Confidence 57999999 9999987543222457777554422 35677899998763
No 35
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.88 E-value=9.1e-22 Score=135.31 Aligned_cols=124 Identities=16% Similarity=0.186 Sum_probs=94.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEe------------CCCccc
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFP------------MSDWKL 67 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~------------~~~~~~ 67 (151)
.|.|+|++|++|+. ..|.+||||++.+.. ++++|++.+ ++.||+|||+|.|.+. ..+.+.
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~-~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~ 77 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKK-KTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE 77 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEe-CCCCCccceEEEEEEecccccccccccCCccccc
Confidence 48999999999988 457899999999965 556787775 6999999999999985 111113
Q ss_pred cceEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCccccc-CCCcceeeeeecccccee-----cCCCccceE
Q 047744 68 LTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITD-QSNDKELIEVKPAPYNVL-----LEDDTYKGQ 141 (151)
Q Consensus 68 ~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~-~~~~~~~~~l~~~~~~~~-----~~~~~~~G~ 141 (151)
...|.|+|||++.+++|+|||++. +++.++... +.. ..|+.|+++...-. ...+-..|.
T Consensus 78 ~~~L~i~V~d~~~~~~ddfLG~v~--------------i~l~~l~~~~~~~-~~W~~L~~~~~~~~~~~~~~~~~~~~~~ 142 (148)
T cd04010 78 KLELRVDLWHASMGGGDVFLGEVR--------------IPLRGLDLQAGSH-QAWYFLQPREEKSTPPGTRSSKDNSLGS 142 (148)
T ss_pred EEEEEEEEEcCCCCCCCceeEEEE--------------EecccccccCCcC-cceeecCCcccccCCCCCcccccCCccc
Confidence 467999999999888999999999 999988765 444 78999988764431 112224466
Q ss_pred EEEEE
Q 047744 142 IVIGF 146 (151)
Q Consensus 142 i~~~~ 146 (151)
+++.+
T Consensus 143 ~~~~~ 147 (148)
T cd04010 143 LRLKI 147 (148)
T ss_pred EEEec
Confidence 66654
No 36
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.88 E-value=2.3e-21 Score=130.27 Aligned_cols=115 Identities=23% Similarity=0.360 Sum_probs=94.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC---
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL--- 81 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~--- 81 (151)
.|+|+|++|++|+..+..+.+||||++.++.+..+|++++ ++.||.|||.|.|.+.. ....|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~-~t~~P~Wne~f~f~~~~----~~~~l~i~v~d~d~~~~~ 76 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIP-QNLNPVWNEKFHFECHN----SSDRIKVRVWDEDDDIKS 76 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceec-CCCCCccceEEEEEecC----CCCEEEEEEEECCCCccc
Confidence 6899999999999999888999999999988888888875 69999999999998864 236899999999852
Q ss_pred --------CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEE
Q 047744 82 --------TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGF 146 (151)
Q Consensus 82 --------~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~ 146 (151)
+.+++||++. +++.++. +.. ..|+.|.+.. .....+|+|++.+
T Consensus 77 ~~~~~~~~~~~~~iG~~~--------------i~l~~~~--~~~-~~w~~L~~~~-----~~~~~~G~i~~~~ 127 (127)
T cd04027 77 RLKQKFTRESDDFLGQTI--------------IEVRTLS--GEM-DVWYNLEKRT-----DKSAVSGAIRLHI 127 (127)
T ss_pred ccceeccccCCCcceEEE--------------EEhHHcc--CCC-CeEEECccCC-----CCCcEeEEEEEEC
Confidence 4689999999 8888764 223 5788887664 2445789999874
No 37
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.88 E-value=4.1e-22 Score=133.63 Aligned_cols=105 Identities=12% Similarity=0.131 Sum_probs=85.9
Q ss_pred CcEEEEEEEEeeCCCCCCCC-CCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIF-GTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM 76 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~ 76 (151)
.+.|.|+|++|++|+..+.. +.+||||++.+.. .+++|++++ ++.||+|||+|.|.++..+ +....|.|+||
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~-~t~nP~~nE~f~f~v~~~~-l~~~~L~~~V~ 91 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKK-KTLNPVFNETLRYKVEREE-LPTRVLNLSVW 91 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCc-CCCCCccCceEEEECCHHH-hCCCEEEEEEE
Confidence 47899999999999998875 7899999998842 346787775 6999999999999987533 24568999999
Q ss_pred ECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744 77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV 124 (151)
Q Consensus 77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l 124 (151)
|++.++++++||++. ++|.++...+.. ..|+.|
T Consensus 92 d~~~~~~~~~iG~~~--------------i~L~~~~~~~~~-~~W~~L 124 (125)
T cd08393 92 HRDSLGRNSFLGEVE--------------VDLGSWDWSNTQ-PTWYPL 124 (125)
T ss_pred eCCCCCCCcEeEEEE--------------EecCccccCCCC-cceEEC
Confidence 999999999999999 999988655443 556654
No 38
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.88 E-value=2.3e-21 Score=130.15 Aligned_cols=116 Identities=10% Similarity=0.145 Sum_probs=94.4
Q ss_pred EEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEE
Q 047744 10 LVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGE 89 (151)
Q Consensus 10 v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~ 89 (151)
|++|++|+. ..+.+||||++.+.+.+.+|++.+ ++.||+|||+|.|.+.... .....|.|+|||++..++|++||+
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~-~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~~~~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLE-NELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEKVGRNRLIGS 77 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeC-CCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCCCCCCceEEE
Confidence 789999988 678899999999998888998876 6899999999999986532 146789999999999999999999
Q ss_pred EEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744 90 TVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV 150 (151)
Q Consensus 90 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~ 150 (151)
+. ++++++...+.. ..|+.|.+.. ....+|+|.++++|.|
T Consensus 78 ~~--------------~~l~~l~~~~~~-~~~~~L~~~~------~~~~~~~l~l~~~~~~ 117 (127)
T cd08373 78 AT--------------VSLQDLVSEGLL-EVTEPLLDSN------GRPTGATISLEVSYQP 117 (127)
T ss_pred EE--------------EEhhHcccCCce-EEEEeCcCCC------CCcccEEEEEEEEEeC
Confidence 99 999998865554 4555554221 2235799999999986
No 39
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.88 E-value=9.2e-22 Score=134.76 Aligned_cols=106 Identities=16% Similarity=0.202 Sum_probs=88.0
Q ss_pred CcEEEEEEEEeeCCCCCC-CCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTN-IFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM 76 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~ 76 (151)
.+.|.|+|++|++|+..+ ..+.+||||++.+.. .++||++++ +++||+|||+|.|.+.. ....|.|+||
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~k-ktlnPvfNE~F~f~v~l----~~~~L~v~V~ 102 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIAR-KTLDPLYQQQLVFDVSP----TGKTLQVIVW 102 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecC-CCCCCccCCeEEEEEcC----CCCEEEEEEE
Confidence 578999999999998764 567899999999843 256888775 79999999999999983 5689999999
Q ss_pred -ECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccc
Q 047744 77 -DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAP 128 (151)
Q Consensus 77 -d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~ 128 (151)
|++.++++++||++. ++|+++...+.. ..|+.|.|..
T Consensus 103 ~d~~~~~~~~~iG~~~--------------i~L~~l~~~~~~-~~Wy~L~~~~ 140 (146)
T cd04028 103 GDYGRMDKKVFMGVAQ--------------ILLDDLDLSNLV-IGWYKLFPTS 140 (146)
T ss_pred eCCCCCCCCceEEEEE--------------EEcccccCCCCc-eeEEecCCcc
Confidence 678888999999999 999998544444 6888888764
No 40
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.88 E-value=8.2e-22 Score=132.16 Aligned_cols=106 Identities=13% Similarity=0.148 Sum_probs=86.8
Q ss_pred CCcEEEEEEEEeeCCCCCCC-CCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEE
Q 047744 2 KGGILEVLLVNAEGIKHTNI-FGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRI 75 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~-~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v 75 (151)
..+.|.|.|++|++|+..+. .+.+||||++.+.. .+++|++.+ ++.||.|||+|.|.++..+ +....|.|+|
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~-l~~~~L~~~V 90 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR-NTTNPVYNETLKYSISHSQ-LETRTLQLSV 90 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeee-CCCCCcccceEEEECCHHH-hCCCEEEEEE
Confidence 46889999999999988765 47899999998842 346787765 6899999999999987533 2456899999
Q ss_pred EECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744 76 MDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV 124 (151)
Q Consensus 76 ~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l 124 (151)
||++.++++++||++. +++.++...+.. ..|+.|
T Consensus 91 ~d~~~~~~~~~lG~~~--------------i~l~~~~~~~~~-~~w~~l 124 (125)
T cd04029 91 WHYDRFGRNTFLGEVE--------------IPLDSWNFDSQH-EECLPL 124 (125)
T ss_pred EECCCCCCCcEEEEEE--------------EeCCcccccCCc-ccEEEC
Confidence 9999999999999999 999988766554 677765
No 41
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.87 E-value=1.8e-21 Score=130.21 Aligned_cols=109 Identities=17% Similarity=0.232 Sum_probs=89.0
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC---CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCG---NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT 78 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~ 78 (151)
..+.|.|+|++|++|+..+..+.+||||++.+. .+..+|++.+ ++.||.|||+|.|.+...+.+....|.|+|||+
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~-~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR-KNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeec-CCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 357899999999999999888899999999883 4557888775 699999999999975332222346799999999
Q ss_pred CCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeec
Q 047744 79 ELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKP 126 (151)
Q Consensus 79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~ 126 (151)
+.++++++||++. +++.++...+.. ..|+.|+|
T Consensus 93 d~~~~~~~iG~~~--------------i~l~~l~~~~~~-~~W~~l~~ 125 (125)
T cd08386 93 DRFSRNDPIGEVS--------------LPLNKVDLTEEQ-TFWKDLKP 125 (125)
T ss_pred CCCcCCcEeeEEE--------------EecccccCCCCc-ceEEecCC
Confidence 9999999999999 999988755554 77887765
No 42
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.87 E-value=2.3e-21 Score=127.44 Aligned_cols=94 Identities=19% Similarity=0.269 Sum_probs=80.4
Q ss_pred cEEEEEEEEeeCCCCCCCC-CCCCEEEEEEECC---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECC
Q 047744 4 GILEVLLVNAEGIKHTNIF-GTPSYYVIARCGN---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTE 79 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~ 79 (151)
|+|+|+|++|++|+..+.. +.+||||++.+.. ...+|++++ ++.||.|||.|.|.+...+.+....|.|+|||++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIR-KDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeEC-CCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 7899999999999999887 8999999998843 346787775 6899999999999876543223468999999999
Q ss_pred CCCCCcccEEEEEeccccccccceeeeecCccc
Q 047744 80 LLTDGGFVGETVFSYIHDQTSVNQCRYYLGGII 112 (151)
Q Consensus 80 ~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~ 112 (151)
.+++|++||++. ++++++.
T Consensus 80 ~~~~dd~lG~~~--------------i~l~~l~ 98 (111)
T cd04041 80 RFTADDRLGRVE--------------IDLKELI 98 (111)
T ss_pred CCCCCCcceEEE--------------EEHHHHh
Confidence 999999999999 9999997
No 43
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.87 E-value=2.8e-21 Score=126.79 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=85.5
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCEEEEEEECCeeeEEeeeeCCCCCCee-ceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744 6 LEVLLVNAEGIKHTNI-FGTPSYYVIARCGNQEHRSKNSMVKGEKAWW-NEKFIFEFPMSDWKLLTHIKFRIMDTELLTD 83 (151)
Q Consensus 6 L~V~v~~a~~L~~~~~-~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~w-ne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~ 83 (151)
|.|+|++|++|+..+. .+.+||||++.++++..+|++++ ++.||.| ||.|.|.++..+ +....|.|+|||++.+++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~-~~~nP~W~ne~f~f~i~~~~-l~~~~l~i~V~d~d~~~~ 78 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVK-KSLNPVWNSEWFRFEVDDEE-LQDEPLQIRVMDHDTYSA 78 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceec-CCCCCcccCcEEEEEcChHH-cCCCeEEEEEEeCCCCCC
Confidence 6899999999998874 67899999999999889998886 6899999 999999987643 134689999999999999
Q ss_pred CcccEEEEEeccccccccceeeeecCcccccC--CCcceeeee
Q 047744 84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQ--SNDKELIEV 124 (151)
Q Consensus 84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~--~~~~~~~~l 124 (151)
+++||++. +++.++...+ ....+|+.|
T Consensus 79 ~~~iG~~~--------------~~l~~l~~~~~~~~~~~w~~l 107 (110)
T cd08688 79 NDAIGKVY--------------IDLNPLLLKDSVSQISGWFPI 107 (110)
T ss_pred CCceEEEE--------------EeHHHhcccCCccccCCeEEc
Confidence 99999999 9999887632 212566655
No 44
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.86 E-value=3.1e-21 Score=132.97 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=81.0
Q ss_pred EEEEEEEEeeCCCCCCCCC--------------CCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccce
Q 047744 5 ILEVLLVNAEGIKHTNIFG--------------TPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTH 70 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~--------------~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~ 70 (151)
+|.|+|++|++|+..+..+ .+||||++.+++++.+|++++ ++.||+|||+|.|.+.... ....
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~-~t~nPvWNE~f~f~v~~p~--~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKK-NSYNPEWNEQIVFPEMFPP--LCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEc-CCCCCCcceEEEEEeeCCC--cCCE
Confidence 4789999999999987543 589999999999999998876 6899999999999875433 3568
Q ss_pred EEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccC
Q 047744 71 IKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQ 115 (151)
Q Consensus 71 L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~ 115 (151)
|.|+|||++..++|++||++. +++.++...+
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~--------------l~l~~l~~~~ 108 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHF--------------IDLSKISNSG 108 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEE--------------EeHHHhccCC
Confidence 999999999999999999999 8888887644
No 45
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.86 E-value=4.5e-21 Score=129.01 Aligned_cols=95 Identities=12% Similarity=0.070 Sum_probs=80.8
Q ss_pred CcEEEEEEEEeeCCCCCCCC-CCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIF-GTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM 76 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~ 76 (151)
.+.|.|.|++|++|+..+.. +.+||||++.+.. .++||++.+ ++.||+|||+|.|.++..+ +....|.+.||
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~-~t~nPvfNE~F~f~v~~~~-l~~~~L~v~V~ 91 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK-GTVNPVFNETLKYVVEADL-LSSRQLQVSVW 91 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeeccccc-CCCCCccceEEEEEcCHHH-hCCcEEEEEEE
Confidence 57899999999999998864 8899999998842 356787775 6999999999999987643 24578999999
Q ss_pred ECCCCCCCcccEEEEEeccccccccceeeeecCcccc
Q 047744 77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIIT 113 (151)
Q Consensus 77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~ 113 (151)
|++.++++++||++. |+|+++.-
T Consensus 92 ~~~~~~~~~~lG~~~--------------i~L~~~~~ 114 (128)
T cd08392 92 HSRTLKRRVFLGEVL--------------IPLADWDF 114 (128)
T ss_pred eCCCCcCcceEEEEE--------------EEcCCccc
Confidence 999999999999999 99998854
No 46
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.86 E-value=2.8e-21 Score=128.52 Aligned_cols=103 Identities=17% Similarity=0.277 Sum_probs=83.1
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
.+.|.|+|++|++|+..+ .+.+||||++.+.. .+++|++.+ ++.||.|||+|.|.++..+ ....|.|+|||
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~-~t~~P~~nE~F~f~v~~~~--~~~~l~v~V~~ 86 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVP-DSANPLFHETFSFDVNERD--YQKRLLVTVWN 86 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCcccc-CCCCCccccEEEEEcChHH--hCCEEEEEEEC
Confidence 578999999999999888 78899999999853 245777765 6999999999999987643 34578999999
Q ss_pred CCCCC-CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744 78 TELLT-DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV 124 (151)
Q Consensus 78 ~~~~~-~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l 124 (151)
++... ++++||++. +++.++...... .+|+.|
T Consensus 87 ~~~~~~~~~~lG~~~--------------i~l~~~~~~~~~-~~Wy~l 119 (119)
T cd08685 87 KLSKSRDSGLLGCMS--------------FGVKSIVNQKEI-SGWYYL 119 (119)
T ss_pred CCCCcCCCEEEEEEE--------------ecHHHhccCccc-cceEeC
Confidence 98875 478999999 999998744433 677653
No 47
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.86 E-value=5.8e-21 Score=127.71 Aligned_cols=106 Identities=20% Similarity=0.270 Sum_probs=88.6
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC---CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECC
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCG---NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTE 79 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~ 79 (151)
.+.|.|+|++|++|+..+..+.+||||++.+. .+..+|++.+ ++.||.|||+|.|.++..+ +....|.|+|||++
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~-l~~~~l~i~V~d~~ 92 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHK-KTLNPEFDESFVFEVPPQE-LPKRTLEVLLYDFD 92 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEc-CCCCCCcccEEEEeCCHHH-hCCCEEEEEEEECC
Confidence 57899999999999999988899999999983 3356777765 6999999999999887632 13468999999999
Q ss_pred CCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeee
Q 047744 80 LLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVK 125 (151)
Q Consensus 80 ~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~ 125 (151)
.++++++||++. ++++++...+.. ..|+.|+
T Consensus 93 ~~~~~~~iG~~~--------------i~l~~~~~~~~~-~~W~~l~ 123 (124)
T cd08387 93 QFSRDECIGVVE--------------LPLAEVDLSEKL-DLWRKIQ 123 (124)
T ss_pred CCCCCceeEEEE--------------EecccccCCCCc-ceEEECc
Confidence 999999999999 999999765554 6777764
No 48
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.86 E-value=6.4e-21 Score=128.32 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=84.8
Q ss_pred CcEEEEEEEEeeCCCCCCCC-CCCCEEEEEEEC---CeeeEEeeeeCCCCCCeeceEEEE-EEeCCCccccceEEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIF-GTPSYYVIARCG---NQEHRSKNSMVKGEKAWWNEKFIF-EFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~---~~~~~T~~~~~~~~nP~wne~f~f-~v~~~~~~~~~~L~v~v~d 77 (151)
.++|.|+|++|++|+..+.. +.+||||++.+. .++.||++++ ++.||.|||+|.| .++..+ +....|.|+|||
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~-~t~nP~wnE~F~f~~~~~~~-~~~~~L~~~V~d 92 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLR-KTRNPVYDETFTFYGIPYNQ-LQDLSLHFAVLS 92 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEc-CCCCCceeeEEEEcccCHHH-hCCCEEEEEEEE
Confidence 57899999999999998875 889999999884 3456788775 6999999999999 454322 134579999999
Q ss_pred CCCCCCCcccEEEEEeccccccccceeeeecCccccc--CCCcceeeeeec
Q 047744 78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITD--QSNDKELIEVKP 126 (151)
Q Consensus 78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~--~~~~~~~~~l~~ 126 (151)
++.+++|++||++. ++|+++... +.. ..|..++|
T Consensus 93 ~d~~~~d~~lG~~~--------------i~L~~l~~~~~~~~-~~~~~~~~ 128 (128)
T cd08388 93 FDRYSRDDVIGEVV--------------CPLAGADLLNEGEL-LVSREIQP 128 (128)
T ss_pred cCCCCCCceeEEEE--------------EeccccCCCCCceE-EEEEeccC
Confidence 99999999999999 999888533 222 56766654
No 49
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.86 E-value=3.2e-20 Score=127.29 Aligned_cols=87 Identities=21% Similarity=0.406 Sum_probs=77.8
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT 82 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~ 82 (151)
.|.|.|+|++|++|+..+. +.+||||+++++++..+|++++ ++.||+|||+|.|.+.. ....|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk-~t~nP~WnE~f~f~i~~----~~~~l~~~V~D~d~~~ 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIK-KNLNPVWNEELTLSVPN----PMAPLKLEVFDKDTFS 74 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEc-CCCCCeecccEEEEecC----CCCEEEEEEEECCCCC
Confidence 3789999999999998887 7899999999999999999876 69999999999999876 3578999999999999
Q ss_pred CCcccEEEEEecc
Q 047744 83 DGGFVGETVFSYI 95 (151)
Q Consensus 83 ~d~~iG~~~~~~~ 95 (151)
+|++||++.+++.
T Consensus 75 ~dd~iG~a~i~l~ 87 (145)
T cd04038 75 KDDSMGEAEIDLE 87 (145)
T ss_pred CCCEEEEEEEEHH
Confidence 9999999994443
No 50
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.86 E-value=4.2e-21 Score=128.39 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=82.6
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC------eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN------QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM 76 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~ 76 (151)
.+.|.|.|++|++|+..+..+.+||||++.+.. .+++|++.+ ++.||+|||+|.|.++..+ +....|.|+||
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~-~t~nPvfnE~F~f~v~~~~-L~~~~L~~~V~ 90 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALE-DQDKPVFNEVFRVPISSTK-LYQKTLQVDVC 90 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccC-CCCCCccccEEEEECCHHH-hhcCEEEEEEE
Confidence 578999999999999888778899999998742 356777765 6999999999999987754 36789999999
Q ss_pred ECCCCCCCcccEEEEEeccccccccceeeeecCcccccC
Q 047744 77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQ 115 (151)
Q Consensus 77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~ 115 (151)
|++.++++++||++. ++|+++...+
T Consensus 91 ~~~~~~~~~~lG~~~--------------i~L~~~~~~~ 115 (124)
T cd08680 91 SVGPDQQEECLGGAQ--------------ISLADFESSE 115 (124)
T ss_pred eCCCCCceeEEEEEE--------------EEhhhccCCC
Confidence 999999999999999 9999885443
No 51
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.86 E-value=6.1e-21 Score=127.53 Aligned_cols=106 Identities=20% Similarity=0.250 Sum_probs=86.6
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT 78 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~ 78 (151)
..+.|.|+|++|++|+..+..+.+||||++.+.+ ...+|++.+ ++.||.|||+|.|.+...+ +....|.|+|||+
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~-l~~~~l~~~V~d~ 91 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFTFKVPYSE-LGNKTLVFSVYDF 91 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCc-CCCCCceeeeEEEeCCHHH-hCCCEEEEEEEeC
Confidence 3579999999999999998888999999998743 345777765 6899999999999886532 1346899999999
Q ss_pred CCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744 79 ELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV 124 (151)
Q Consensus 79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l 124 (151)
+.++++++||++. ++++++...... ..|+.|
T Consensus 92 d~~~~~~~lG~~~--------------i~l~~~~~~~~~-~~W~~l 122 (124)
T cd08385 92 DRFSKHDLIGEVR--------------VPLLTVDLGHVT-EEWRDL 122 (124)
T ss_pred CCCCCCceeEEEE--------------EecCcccCCCCc-ceEEEc
Confidence 9999999999999 999988654444 677665
No 52
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.86 E-value=6.5e-21 Score=124.04 Aligned_cols=100 Identities=19% Similarity=0.290 Sum_probs=83.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCC
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDG 84 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d 84 (151)
.|.|+|++|++|+..+..+.+||||+++++++.++|++.+ ++.||.|||.|.|.+... ....|.|+|||++. +
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~v~~~---~~~~l~v~v~d~~~---~ 73 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKE-RTNNPVWEEGFTFLVRNP---ENQELEIEVKDDKT---G 73 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCcccc-CCCCCcccceEEEEeCCC---CCCEEEEEEEECCC---C
Confidence 3889999999999988888999999999999989998875 689999999999999864 24689999999885 7
Q ss_pred cccEEEEEeccccccccceeeeecCcccccCC-Ccceeeeee
Q 047744 85 GFVGETVFSYIHDQTSVNQCRYYLGGIITDQS-NDKELIEVK 125 (151)
Q Consensus 85 ~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~-~~~~~~~l~ 125 (151)
++||++. +++.++..... ....|+.|.
T Consensus 74 ~~iG~~~--------------i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 74 KSLGSLT--------------LPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred CccEEEE--------------EEHHHhhccccceeeeeEecC
Confidence 8999999 99988875431 114565553
No 53
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.86 E-value=5.7e-21 Score=127.69 Aligned_cols=105 Identities=16% Similarity=0.168 Sum_probs=83.8
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
.+.|.|+|++|++|+..+..+.+||||++.+.+ ...+|++++ ++.||.|||+|.|.+...+.+....|.|+|||
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVK-KTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccC-CCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 578999999999999998888999999999864 456787765 69999999999998544221235789999999
Q ss_pred CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744 78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV 124 (151)
Q Consensus 78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l 124 (151)
++.++++++||++. +++++... ... ..|+.|
T Consensus 94 ~~~~~~~~~iG~~~--------------i~l~~~~~-~~~-~~W~~L 124 (125)
T cd04031 94 YDRDGENDFLGEVV--------------IDLADALL-DDE-PHWYPL 124 (125)
T ss_pred CCCCCCCcEeeEEE--------------Eecccccc-cCC-cceEEC
Confidence 99999999999999 88888332 222 456655
No 54
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.85 E-value=9.8e-21 Score=126.78 Aligned_cols=106 Identities=20% Similarity=0.273 Sum_probs=87.0
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC---CeeeEEeeeeCCCCCCeeceEEEEE-EeCCCccccceEEEEEEEC
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCG---NQEHRSKNSMVKGEKAWWNEKFIFE-FPMSDWKLLTHIKFRIMDT 78 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~~~~nP~wne~f~f~-v~~~~~~~~~~L~v~v~d~ 78 (151)
.+.|.|+|++|++|+..+..+..||||++.+. .++.+|++.+ + .||+|||+|.|. ++..+ +....|.|+|||+
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~-l~~~~L~~~V~~~ 91 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQR-G-PNPVFNETFTFSRVEPEE-LNNMALRFRLYGV 91 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeeccccc-C-CCCcccCEEEECCCCHHH-hccCEEEEEEEEC
Confidence 57899999999999999988889999997653 3456777654 4 999999999997 55432 3567899999999
Q ss_pred CCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeec
Q 047744 79 ELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKP 126 (151)
Q Consensus 79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~ 126 (151)
+.++++++||++. ++|+++...+.. ..|+.|+|
T Consensus 92 ~~~~~~~~lG~~~--------------i~L~~l~~~~~~-~~w~~L~p 124 (124)
T cd08389 92 ERMRKERLIGEKV--------------VPLSQLNLEGET-TVWLTLEP 124 (124)
T ss_pred CCcccCceEEEEE--------------EeccccCCCCCc-eEEEeCCC
Confidence 9999999999999 999999665554 77887765
No 55
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.85 E-value=1.5e-20 Score=126.11 Aligned_cols=105 Identities=10% Similarity=0.158 Sum_probs=86.6
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-----CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCG-----NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
.+.|.|+|++|++|+..+..+.+||||++.+. ....+|++++ ++.||+|||+|.|.+...+ +....|.|.|||
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~~~nP~wne~f~f~i~~~~-l~~~~l~i~v~~ 92 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKK-DNLNPVFDETFEFPVSLEE-LKRRTLDVAVKN 92 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEeccccc-CCCCCEECeEEEEecCHHH-hcCCEEEEEEEE
Confidence 47899999999999999988899999999985 3457888775 6899999999999986532 134689999999
Q ss_pred CCCC--CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744 78 TELL--TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV 124 (151)
Q Consensus 78 ~~~~--~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l 124 (151)
++.+ +++++||++. +++.++...... .+|+.|
T Consensus 93 ~~~~~~~~~~~iG~~~--------------i~l~~l~~~~~~-~~W~~L 126 (127)
T cd04030 93 SKSFLSREKKLLGQVL--------------IDLSDLDLSKGF-TQWYDL 126 (127)
T ss_pred CCcccCCCCceEEEEE--------------EecccccccCCc-cceEEC
Confidence 9876 6899999999 999998655544 667655
No 56
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.85 E-value=2.2e-20 Score=124.36 Aligned_cols=101 Identities=16% Similarity=0.215 Sum_probs=85.1
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT 82 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~ 82 (151)
|.|+|+|++|++|+..+..+.+||||++.++++ ..+|++. .++.||.|||.|.|.+... .+.|.|+|||++.++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~-~~t~~P~Wne~f~~~v~~~----~~~L~v~v~d~~~~~ 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTI-SNTLNPVWDEVLYVPVTSP----NQKITLEVMDYEKVG 75 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEE-CCCcCCccCceEEEEecCC----CCEEEEEEEECCCCC
Confidence 689999999999999998899999999999764 4666665 4699999999999988763 478999999999999
Q ss_pred CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeee
Q 047744 83 DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVK 125 (151)
Q Consensus 83 ~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~ 125 (151)
+|++||++. +++.+++.. .. .+|+.+.
T Consensus 76 ~d~~IG~~~--------------~~l~~l~~~-~~-~~~~~~~ 102 (120)
T cd04045 76 KDRSLGSVE--------------INVSDLIKK-NE-DGKYVEY 102 (120)
T ss_pred CCCeeeEEE--------------EeHHHhhCC-CC-CceEEec
Confidence 999999999 999998865 33 4555543
No 57
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.85 E-value=1e-20 Score=132.12 Aligned_cols=108 Identities=16% Similarity=0.222 Sum_probs=87.0
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-----CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCG-----NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM 76 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~ 76 (151)
..|.|.|+|++|++|+..+..+.+||||++.+. ...++|++++ ++.||.|||+|.|.....+.+....|.|+||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~-~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~ 103 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVK-KSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccC-CCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence 468999999999999999988899999999873 3457887775 6899999999999754322123467999999
Q ss_pred ECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeee
Q 047744 77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVK 125 (151)
Q Consensus 77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~ 125 (151)
|++.++++++||++. ++++++...+.. ..|+.+.
T Consensus 104 d~d~~~~d~~lG~v~--------------i~l~~~~~~~~~-~~w~~~~ 137 (162)
T cd04020 104 DHDKLSSNDFLGGVR--------------LGLGTGKSYGQA-VDWMDST 137 (162)
T ss_pred eCCCCCCCceEEEEE--------------EeCCccccCCCc-cccccCC
Confidence 999999999999999 888887655554 5666654
No 58
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.85 E-value=1.8e-20 Score=125.76 Aligned_cols=85 Identities=22% Similarity=0.307 Sum_probs=74.3
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT 82 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~ 82 (151)
.|+|.|+|++|++|+. +..+.+||||++.++++.++|++++ ++.||+|||+|.|...... ....|.|+|||++.++
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~-~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~d~~s 102 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIW-NNNNPRWNATFDFGSVELS--PGGKLRFEVWDRDNGW 102 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceec-CCCCCcCCCEEEEecccCC--CCCEEEEEEEeCCCCC
Confidence 5899999999999984 6678899999999998889998886 6899999999999643322 4578999999999999
Q ss_pred CCcccEEEE
Q 047744 83 DGGFVGETV 91 (151)
Q Consensus 83 ~d~~iG~~~ 91 (151)
+|++||++.
T Consensus 103 ~dd~IG~~~ 111 (127)
T cd04032 103 DDDLLGTCS 111 (127)
T ss_pred CCCeeEEEE
Confidence 999999999
No 59
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.84 E-value=5e-20 Score=122.86 Aligned_cols=107 Identities=14% Similarity=0.229 Sum_probs=87.3
Q ss_pred CcEEEEEEEEeeCCCCCC-CCCCCCEEEEEEEC---CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744 3 GGILEVLLVNAEGIKHTN-IFGTPSYYVIARCG---NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT 78 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~---~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~ 78 (151)
.+.|.|.|++|++|+..+ ..+.+||||++.+. .+..+|++.+ ++.||+|||.|.|.++..+. ....|.|+|||+
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~-~~~~P~wne~f~f~i~~~~l-~~~~l~i~v~d~ 90 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKR-KTQNPNFDETFVFQVSFKEL-QRRTLRLSVYDV 90 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEc-CCCCCccceEEEEEcCHHHh-cccEEEEEEEEC
Confidence 578999999999999988 67889999999873 3345676664 69999999999999875321 246899999999
Q ss_pred CCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeec
Q 047744 79 ELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKP 126 (151)
Q Consensus 79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~ 126 (151)
+..+++++||++. ++|.++...... ..|+.|.|
T Consensus 91 ~~~~~~~~iG~~~--------------i~L~~l~~~~~~-~~w~~L~~ 123 (123)
T cd08390 91 DRFSRHCIIGHVL--------------FPLKDLDLVKGG-VVWRDLEP 123 (123)
T ss_pred CcCCCCcEEEEEE--------------EeccceecCCCc-eEEEeCCC
Confidence 9988999999999 999998766655 67777653
No 60
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.84 E-value=1.5e-19 Score=121.05 Aligned_cols=115 Identities=16% Similarity=0.249 Sum_probs=89.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe---eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ---EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL 81 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~---~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~ 81 (151)
.|.|+|++|++|+..+..+.+||||++.+.+. ..+|++++ ++.||.|||+|.|.+... ....|.|+|||++.+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~-~t~~P~Wne~f~f~i~~~---~~~~L~i~v~d~d~~ 77 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIY-DTLNPRWDEEFELEVPAG---EPLWISATVWDRSFV 77 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEec-CCCCCcccceEEEEcCCC---CCCEEEEEEEECCCC
Confidence 58999999999999998889999999987643 46787765 689999999999988763 246899999999998
Q ss_pred CCCcccEEEEEeccccccccceeeeecCccccc--CCCcceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744 82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITD--QSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI 149 (151)
Q Consensus 82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~ 149 (151)
+++++||++. ++++++... +.....|+.|. .+|+|.+.+.+.
T Consensus 78 ~~~~~iG~~~--------------i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~ 121 (126)
T cd04043 78 GKHDLCGRAS--------------LKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSME 121 (126)
T ss_pred CCCceEEEEE--------------EecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEe
Confidence 8999999999 988876432 22213454443 257887777663
No 61
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.84 E-value=3.2e-20 Score=123.74 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=85.3
Q ss_pred CCcEEEEEEEEeeCCCCCC-CCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEE
Q 047744 2 KGGILEVLLVNAEGIKHTN-IFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRI 75 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~-~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v 75 (151)
..+.|.|+|++|++|+..+ ..+.+||||++.+.. ...+|++.+ ++.||.|||+|.|.+...+ +....|.|+|
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~f~f~i~~~~-l~~~~l~i~v 89 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKK-NTTNPVFNETLKYHISKSQ-LETRTLQLSV 89 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccC-CCCCCcccceEEEeCCHHH-hCCCEEEEEE
Confidence 3589999999999999888 678899999998742 346777654 6999999999999877532 1356899999
Q ss_pred EECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744 76 MDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV 124 (151)
Q Consensus 76 ~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l 124 (151)
||++.++++++||++. ++++++...... ..|+.|
T Consensus 90 ~d~~~~~~~~~iG~~~--------------i~l~~l~~~~~~-~~w~~l 123 (123)
T cd08521 90 WHHDRFGRNTFLGEVE--------------IPLDSWDLDSQQ-SEWYPL 123 (123)
T ss_pred EeCCCCcCCceeeEEE--------------EecccccccCCC-ccEEEC
Confidence 9999999999999999 999988654444 566643
No 62
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.84 E-value=1.6e-19 Score=119.34 Aligned_cols=115 Identities=20% Similarity=0.361 Sum_probs=88.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCC
Q 047744 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDG 84 (151)
Q Consensus 6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d 84 (151)
|.|+|++|++|+.. +.+||||++.++++. .+|++.. + .||.|||+|.|.++..+. ....|.+.+||.+....+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~-~-~~P~Wne~f~f~v~~~~~-~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVE-K-LNPFWGEEFVFDDPPPDV-TFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEE-C-CCCcccceEEEecCCccc-cEEEEEEEEEecccCCCe
Confidence 78999999999876 789999999998754 5777765 5 999999999999876431 346788999998876666
Q ss_pred cccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744 85 GFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF 148 (151)
Q Consensus 85 ~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~ 148 (151)
.++|.+. + ..+...+.. +.|+.|+|... .+...|+|++.+.|
T Consensus 76 ~~~g~v~--------------l--~~~~~~~~~-~~w~~L~~~~~-----~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVA--------------L--SKLDLGQGK-DEWFPLTPVDP-----DSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEE--------------e--cCcCCCCcc-eeEEECccCCC-----CCCcCceEEEEEEC
Confidence 6666666 4 444334444 78999987753 34578999999987
No 63
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.83 E-value=2.8e-20 Score=126.36 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=74.6
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-----eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-----EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-----~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
.+.|.|+|++|++|+..+..+.+||||++.+... +.+|++.+ ++.||+|||+|.|.++..+ +....|.|+|||
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k-~t~nP~~nE~f~F~v~~~~-l~~~~l~~~V~~ 91 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKR-DDTNPIFNEAMIFSVPAIV-LQDLSLRVTVAE 91 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCcccc-CCCCCeeceeEEEECCHHH-hCCcEEEEEEEe
Confidence 5789999999999999888889999999988421 44666664 6999999999999987643 356789999999
Q ss_pred CCCCCCCcccEEEE
Q 047744 78 TELLTDGGFVGETV 91 (151)
Q Consensus 78 ~~~~~~d~~iG~~~ 91 (151)
++.++++++||++.
T Consensus 92 ~d~~~~~~~iG~v~ 105 (136)
T cd08406 92 STEDGKTPNVGHVI 105 (136)
T ss_pred CCCCCCCCeeEEEE
Confidence 99999999999999
No 64
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.83 E-value=2e-19 Score=118.60 Aligned_cols=101 Identities=17% Similarity=0.272 Sum_probs=83.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCC
Q 047744 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDG 84 (151)
Q Consensus 6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d 84 (151)
|+|.|++|++|+..+..+.+||||++.+.+.. .+|+++. ++.+|.|||+|.|.+... ..+.+.|+|||++..+++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~-~~~~P~Wne~f~~~~~~~---~~~~l~~~v~d~~~~~~~ 76 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIK-KTLNPVWNESFEVPVPSR---VRAVLKVEVYDWDRGGKD 76 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceec-CCCCCcccccEEEEeccC---CCCEEEEEEEeCCCCCCC
Confidence 57999999999998888889999999997543 5777764 699999999999988753 357899999999998899
Q ss_pred cccEEEEEeccccccccceeeeecCcccccCCCcceeeeee
Q 047744 85 GFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVK 125 (151)
Q Consensus 85 ~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~ 125 (151)
++||++. +++.++...... ..|..|.
T Consensus 77 ~~iG~~~--------------~~l~~l~~~~~~-~~~~~L~ 102 (115)
T cd04040 77 DLLGSAY--------------IDLSDLEPEETT-ELTLPLD 102 (115)
T ss_pred CceEEEE--------------EEHHHcCCCCcE-EEEEECc
Confidence 9999999 998888764443 4555554
No 65
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.3e-19 Score=143.08 Aligned_cols=127 Identities=17% Similarity=0.307 Sum_probs=103.8
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECC
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTE 79 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~ 79 (151)
...|.|+|++|++|+..+..|.+||||++.+.. .+.+|++.+ ++.||+|||+|.|.++..+ +....|.+.|||.|
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r-~tlnP~fnEtf~f~v~~~~-l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHR-KTLNPVFNETFRFEVPYEE-LSNRVLHLSVYDFD 243 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeee-cCcCCccccceEeecCHHH-hccCEEEEEEEecC
Confidence 467999999999999999667899999999854 456788776 6999999999999977654 36789999999999
Q ss_pred CCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744 80 LLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV 150 (151)
Q Consensus 80 ~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~ 150 (151)
+|++|++||++. ++|..+...... ..|..+++..-. ..+ ..|||.++++|.|
T Consensus 244 rfsr~~~iGev~--------------~~l~~~~~~~~~-~~w~~l~~~~~~---~~~-~~gel~~sL~Y~p 295 (421)
T KOG1028|consen 244 RFSRHDFIGEVI--------------LPLGEVDLLSTT-LFWKDLQPSSTD---SEE-LAGELLLSLCYLP 295 (421)
T ss_pred CcccccEEEEEE--------------ecCccccccccc-eeeeccccccCC---ccc-ccceEEEEEEeec
Confidence 999999999999 998888655543 568888765421 122 2289999999987
No 66
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.82 E-value=1.6e-19 Score=120.86 Aligned_cols=91 Identities=21% Similarity=0.320 Sum_probs=78.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCee--eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQE--HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT 82 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~--~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~ 82 (151)
.|+|.|++|++|+..+..+.+||||++.++++. .+|++++ ++.||.|||+|.|.+... ....|.|+|||++.++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~-~t~nP~Wne~f~f~~~~~---~~~~L~~~V~d~d~~~ 76 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIP-NTLNPVFGKMFELEATLP---GNSILKISVMDYDLLG 76 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEE-CCCCCccceEEEEEecCC---CCCEEEEEEEECCCCC
Confidence 479999999999999988999999999998765 4666665 599999999999987653 3578999999999999
Q ss_pred CCcccEEEEEeccccccccceeeeecCcccc
Q 047744 83 DGGFVGETVFSYIHDQTSVNQCRYYLGGIIT 113 (151)
Q Consensus 83 ~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~ 113 (151)
+|++||++. +++.+...
T Consensus 77 ~dd~iG~~~--------------i~l~~~~~ 93 (124)
T cd04037 77 SDDLIGETV--------------IDLEDRFF 93 (124)
T ss_pred CCceeEEEE--------------Eeeccccc
Confidence 999999999 99888764
No 67
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.82 E-value=1.4e-19 Score=123.18 Aligned_cols=106 Identities=17% Similarity=0.270 Sum_probs=89.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEEC----CeeeEEeeeeCCCCCCeeceEEEEEEeCCC------------ccccc
Q 047744 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCG----NQEHRSKNSMVKGEKAWWNEKFIFEFPMSD------------WKLLT 69 (151)
Q Consensus 6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~----~~~~~T~~~~~~~~nP~wne~f~f~v~~~~------------~~~~~ 69 (151)
|.|.|++|++|+.. ..+.+||||++.+. .+.++|+++. ++.||.|||+|.|.+.... .+...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~-~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKK-KTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceee-CCCCCCcceEEEEEcccccccccccccccccccccc
Confidence 67999999999888 67899999999998 6678888776 5899999999999876641 11346
Q ss_pred eEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccc
Q 047744 70 HIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAP 128 (151)
Q Consensus 70 ~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~ 128 (151)
.|.|+|||.+.++++++||++. +++.++...+.. ..|+.|+|..
T Consensus 79 ~l~i~V~d~~~~~~~~~IG~~~--------------i~l~~l~~~~~~-~~W~~L~~~~ 122 (137)
T cd08675 79 ELRVELWHASMVSGDDFLGEVR--------------IPLQGLQQAGSH-QAWYFLQPRE 122 (137)
T ss_pred EEEEEEEcCCcCcCCcEEEEEE--------------EehhhccCCCcc-cceEecCCcC
Confidence 8999999999888999999999 999988765555 7898888775
No 68
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.82 E-value=2e-19 Score=118.06 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=77.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCC-ccccceEEEEEEECCCCCC
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSD-WKLLTHIKFRIMDTELLTD 83 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~-~~~~~~L~v~v~d~~~~~~ 83 (151)
.|+|+|++|++|+ .+.+||||++++++++++|++.+ ++.||.|||+|.|.+.... .+....|.|+|||++.+++
T Consensus 5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~ 79 (111)
T cd04011 5 QVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKK-GTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRS 79 (111)
T ss_pred EEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEe-ccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccccc
Confidence 5899999999998 46799999999999999988775 6899999999999875432 1124689999999999999
Q ss_pred CcccEEEEEeccccccccceeeeecCccccc
Q 047744 84 GGFVGETVFSYIHDQTSVNQCRYYLGGIITD 114 (151)
Q Consensus 84 d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~ 114 (151)
|++||++. ++++++...
T Consensus 80 ~~~iG~~~--------------i~l~~v~~~ 96 (111)
T cd04011 80 DTLIGSFK--------------LDVGTVYDQ 96 (111)
T ss_pred CCccEEEE--------------ECCccccCC
Confidence 99999999 999888654
No 69
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.82 E-value=7.9e-20 Score=124.26 Aligned_cols=88 Identities=15% Similarity=0.252 Sum_probs=73.7
Q ss_pred CCcEEEEEEEEeeCCCCCCC--CCCCCEEEEEEECCe-----eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEE
Q 047744 2 KGGILEVLLVNAEGIKHTNI--FGTPSYYVIARCGNQ-----EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFR 74 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~--~~~~dpyv~v~~~~~-----~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~ 74 (151)
..+.|.|.|++|++|+..+. .+.+||||++.+..+ +++|++.+ ++.||+|||.|.|.++..+ +....|.|+
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k-~t~nPvfNE~f~F~v~~~~-L~~~~L~~~ 90 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAK-HKINPVWNEMIMFELPSEL-LAASSVELE 90 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceee-CCCCCccccEEEEECCHHH-hCccEEEEE
Confidence 46889999999999998873 345999999988542 34676665 6999999999999988643 356789999
Q ss_pred EEECCCCCCCcccEEEE
Q 047744 75 IMDTELLTDGGFVGETV 91 (151)
Q Consensus 75 v~d~~~~~~d~~iG~~~ 91 (151)
|||++.++++++||++.
T Consensus 91 V~d~d~~~~~d~iG~v~ 107 (138)
T cd08407 91 VLNQDSPGQSLPLGRCS 107 (138)
T ss_pred EEeCCCCcCcceeceEE
Confidence 99999999999999999
No 70
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.82 E-value=4.1e-19 Score=116.67 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=81.2
Q ss_pred CCCCCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEEEeccccc
Q 047744 20 NIFGTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQ 98 (151)
Q Consensus 20 ~~~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~ 98 (151)
...|.+||||++.++++. .+|++.+ ++.||.|||.|.|.+... ....|.|+|||++.+ ++++||++.
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~-~t~nP~Wne~f~f~v~~~---~~~~l~i~v~d~~~~-~d~~iG~~~------- 75 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKK-KTNNPSWNASTEFLVTDR---RKSRVTVVVKDDRDR-HDPVLGSVS------- 75 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeec-cCCCCccCCceEEEecCc---CCCEEEEEEEECCCC-CCCeEEEEE-------
Confidence 346789999999998764 5676654 689999999999988753 357799999999988 899999999
Q ss_pred cccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744 99 TSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV 150 (151)
Q Consensus 99 ~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~ 150 (151)
++|.++.........|+.|. +..+|+|.+++.|.|
T Consensus 76 -------v~L~~l~~~~~~~~~w~~L~----------~~~~G~i~~~~~~~p 110 (111)
T cd04052 76 -------ISLNDLIDATSVGQQWFPLS----------GNGQGRIRISALWKP 110 (111)
T ss_pred -------ecHHHHHhhhhccceeEECC----------CCCCCEEEEEEEEec
Confidence 99998875433225666653 245799999999987
No 71
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.81 E-value=1e-18 Score=117.12 Aligned_cols=118 Identities=18% Similarity=0.285 Sum_probs=90.0
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT 82 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~ 82 (151)
..|.|+|++|+ |...+..+.+||||++.++++ ..+|++.+ ++.||.|||.|.|.+.. ...|.|+|||++..+
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~-~t~~P~Wne~f~~~~~~-----~~~l~~~V~d~~~~~ 74 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSK-KTSNPKWNEHFTVLVTP-----QSTLEFKVWSHHTLK 74 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeC-CCCCCccccEEEEEeCC-----CCEEEEEEEeCCCCC
Confidence 47899999998 555555788999999999877 67887765 68999999999998864 368999999999999
Q ss_pred CCcccEEEEEeccccccccceeeeecCcccccCCC-c---ceeeeeeccccceecCCCccceEEEEEE
Q 047744 83 DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN-D---KELIEVKPAPYNVLLEDDTYKGQIVIGF 146 (151)
Q Consensus 83 ~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~~~~G~i~~~~ 146 (151)
+|++||++. ++++++...... . ..|+.+.-.. ...+...|+|.+.+
T Consensus 75 ~~~~iG~~~--------------i~l~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ADVLLGEAS--------------LDLSDILKNHNGKLENVKLTLNLSSEN----KGSSVKVGELTVIL 124 (125)
T ss_pred CCcEEEEEE--------------EEHHHhHhhcCCCccceEEEEEEEccC----CCcceeeeeEEEEe
Confidence 999999999 998888754331 0 1244443110 11346789998875
No 72
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.81 E-value=1.9e-19 Score=122.30 Aligned_cols=87 Identities=18% Similarity=0.339 Sum_probs=73.3
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC--e---eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN--Q---EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~--~---~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
.+.|.|+|++|++|+..+..+.+||||++.+.. + +.+|++.+ ++.||.|||+|.|.++... +....|.|+|||
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k-~t~nP~w~e~F~f~v~~~~-~~~~~l~~~v~d 91 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKK-CTLNPVFNESFVFDIPSEE-LEDISVEFLVLD 91 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCcccc-CCCCCccCceEEEECCHHH-hCCCEEEEEEEE
Confidence 578999999999999999889999999998743 2 34666664 6999999999999987533 134679999999
Q ss_pred CCCCCCCcccEEEE
Q 047744 78 TELLTDGGFVGETV 91 (151)
Q Consensus 78 ~~~~~~d~~iG~~~ 91 (151)
++.++++++||++.
T Consensus 92 ~d~~~~~~~iG~~~ 105 (136)
T cd08404 92 SDRVTKNEVIGRLV 105 (136)
T ss_pred CCCCCCCccEEEEE
Confidence 99999999999999
No 73
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.80 E-value=2.1e-19 Score=122.05 Aligned_cols=88 Identities=20% Similarity=0.403 Sum_probs=73.6
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM 76 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~ 76 (151)
..|.|.|.|++|++|+..+..+.+||||++.+.. ...+|++.+ ++.||.|||+|.|.++..+ +....|.|+||
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~-l~~~~l~~~v~ 90 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-RTLNPYYNESFSFEVPFEQ-IQKVHLIVTVL 90 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeecccee-CCCCCcccceEEEECCHHH-hCCCEEEEEEE
Confidence 4689999999999999999889999999998842 235666654 6999999999999986532 12357999999
Q ss_pred ECCCCCCCcccEEEE
Q 047744 77 DTELLTDGGFVGETV 91 (151)
Q Consensus 77 d~~~~~~d~~iG~~~ 91 (151)
|++.+++|++||++.
T Consensus 91 d~~~~~~~~~iG~~~ 105 (136)
T cd08402 91 DYDRIGKNDPIGKVV 105 (136)
T ss_pred eCCCCCCCceeEEEE
Confidence 999999999999999
No 74
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.80 E-value=5.5e-19 Score=119.46 Aligned_cols=87 Identities=15% Similarity=0.231 Sum_probs=74.7
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
.+.|.|+|++|++|+..+..+.+||||++.+.. ...+|++.+ ++.||.|||+|.|.+...+ +....|.|+|||
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~-l~~~~l~~~V~d 89 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKK-KTLNPEFNEEFFYDIKHSD-LAKKTLEITVWD 89 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEe-ccCCCCcccEEEEECCHHH-hCCCEEEEEEEe
Confidence 589999999999999999888999999998842 346787776 6999999999999887533 134689999999
Q ss_pred CCCCCCCcccEEEE
Q 047744 78 TELLTDGGFVGETV 91 (151)
Q Consensus 78 ~~~~~~d~~iG~~~ 91 (151)
++..+++++||++.
T Consensus 90 ~d~~~~~~~lG~~~ 103 (133)
T cd08384 90 KDIGKSNDYIGGLQ 103 (133)
T ss_pred CCCCCCccEEEEEE
Confidence 99988999999999
No 75
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.80 E-value=5.8e-19 Score=119.48 Aligned_cols=95 Identities=21% Similarity=0.240 Sum_probs=79.2
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-------CeeeEEeeeeCCCCCCeeceEEEEEEeCCCc-cccceEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCG-------NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDW-KLLTHIKFR 74 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-------~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~-~~~~~L~v~ 74 (151)
.+.|.|+|++|++|+..+..+.+||||++.+. ....+|++++ ++.||+|||+|.|.+..... .....|.|+
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKK-KTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCc-CCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 46899999999999998888899999999885 2356787775 68999999999998865210 134689999
Q ss_pred EEECCCCCCCcccEEEEEeccccccccceeeeecCccc
Q 047744 75 IMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGII 112 (151)
Q Consensus 75 v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~ 112 (151)
|||++.++++++||++. ++++++.
T Consensus 94 V~d~d~~~~d~~iG~~~--------------i~l~~l~ 117 (133)
T cd04009 94 VKDYDLLGSNDFEGEAF--------------LPLNDIP 117 (133)
T ss_pred EEecCCCCCCcEeEEEE--------------EeHHHCC
Confidence 99999999999999999 8887775
No 76
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.80 E-value=9.2e-19 Score=120.88 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=80.5
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-----------------------------eeEEeeeeCCCCCCe
Q 047744 1 MKGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-----------------------------EHRSKNSMVKGEKAW 51 (151)
Q Consensus 1 m~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-----------------------------~~~T~~~~~~~~nP~ 51 (151)
++.+.|.|+|++|++|...+..|.+||||++.+... ..+|++. .++.||.
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~-~~tlnP~ 103 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVK-PQTLNPV 103 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEeccee-cCCCCCc
Confidence 467899999999999999998899999999988532 2456655 4699999
Q ss_pred eceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744 52 WNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV 124 (151)
Q Consensus 52 wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l 124 (151)
|||+|.|.+... ....|.|+|||++ +++||++. ++++++... .. ..|+.|
T Consensus 104 WnE~F~f~v~~~---~~~~L~i~V~D~d----d~~IG~v~--------------i~l~~l~~~-~~-d~W~~L 153 (153)
T cd08676 104 WNETFRFEVEDV---SNDQLHLDIWDHD----DDFLGCVN--------------IPLKDLPSC-GL-DSWFKL 153 (153)
T ss_pred cccEEEEEeccC---CCCEEEEEEEecC----CCeEEEEE--------------EEHHHhCCC-CC-CCeEeC
Confidence 999999988653 3578999999997 78999999 888888733 23 566543
No 77
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.80 E-value=2.7e-19 Score=158.98 Aligned_cols=119 Identities=13% Similarity=0.271 Sum_probs=100.5
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL 81 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~ 81 (151)
-|.|.|+|++|++|. +.++++||||+++++++ ++||++++ ++.||+|||.|.|.+..+. ....|.|+|||+|.+
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk-~~~nP~Wne~f~~~~~~p~--~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVS-HSSSPEWKEGFTWAFDSPP--KGQKLHISCKSKNTF 2053 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccC-CCCCCCcccceeeeecCCC--CCCceEEEEEecCcc
Confidence 489999999999998 55789999999999966 67788876 6999999999998776644 456799999999999
Q ss_pred CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceE---EEEEEEEEe
Q 047744 82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQ---IVIGFKFIV 150 (151)
Q Consensus 82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~---i~~~~~~~~ 150 (151)
++| .||++. |++.++..++.. .+|++|. .++++.|+ |.|++.|.+
T Consensus 2054 ~kd-~~G~~~--------------i~l~~vv~~~~~-~~~~~L~--------~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 GKS-SLGKVT--------------IQIDRVVMEGTY-SGEYSLN--------PESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCC-CCceEE--------------EEHHHHhcCcee-eeeeecC--------cccccCCCcceEEEEEEecC
Confidence 655 899999 999999988877 7777774 35667888 999999864
No 78
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.79 E-value=4.3e-18 Score=117.56 Aligned_cols=121 Identities=13% Similarity=0.147 Sum_probs=87.7
Q ss_pred EEEEEEEEeeC--CCCCCCCCCCCEEEEEEE-----CCeeeEEeeeeCCCCCCeeceEEEEEEeCCC-----ccccceEE
Q 047744 5 ILEVLLVNAEG--IKHTNIFGTPSYYVIARC-----GNQEHRSKNSMVKGEKAWWNEKFIFEFPMSD-----WKLLTHIK 72 (151)
Q Consensus 5 ~L~V~v~~a~~--L~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~-----~~~~~~L~ 72 (151)
...++|..|++ |+..+..+.+||||++.+ ..++.+|++.+ ++.||+|||+|.|.+.... .+....|.
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k-~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~ 81 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIK-DTNSPEYNESFKLNINRKHRSFQRVFKRHGLK 81 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCccc-CCCCCcccceEEEEeccccchhhhhccCCcEE
Confidence 35666777776 566666678999999986 23567888876 6999999999999986531 12356799
Q ss_pred EEEEECCCC-CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744 73 FRIMDTELL-TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF 148 (151)
Q Consensus 73 v~v~d~~~~-~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~ 148 (151)
|+|||++.+ .+|++||++. ++|+.+...... ..|+.| .+.....-|+|.+.++.
T Consensus 82 ~~V~d~~~f~~~D~~iG~~~--------------i~L~~l~~~~~~-~~~~~L-------~~~~k~~Gg~l~v~ir~ 136 (155)
T cd08690 82 FEVYHKGGFLRSDKLLGTAQ--------------VKLEPLETKCEI-HESVDL-------MDGRKATGGKLEVKVRL 136 (155)
T ss_pred EEEEeCCCcccCCCeeEEEE--------------EEcccccccCcc-eEEEEh-------hhCCCCcCCEEEEEEEe
Confidence 999999986 5799999999 999998655443 344443 22223345888887764
No 79
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.79 E-value=6e-18 Score=114.94 Aligned_cols=116 Identities=17% Similarity=0.235 Sum_probs=86.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-------------eeeEEeeeeCCCCCCee-ceEEEEEEeCCCccccce
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-------------QEHRSKNSMVKGEKAWW-NEKFIFEFPMSDWKLLTH 70 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------------~~~~T~~~~~~~~nP~w-ne~f~f~v~~~~~~~~~~ 70 (151)
+..|++++|++|+ .+.+|++||||++.+.. +.++|++.+ ++.||+| ||+|.|.+.. ...
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~-~tlnP~W~nE~f~f~v~~-----~~~ 74 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVE-NTINPVWHREQFVFVGLP-----TDV 74 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEc-CCCCCceEceEEEEEcCC-----CCE
Confidence 4678999999998 77889999999998842 356777765 6899999 9999998864 358
Q ss_pred EEEEEEECCCCCC---CcccEEEEEeccccccccceeeeecCcccccCCCc--ceeeeeeccccceecCCCccceEEEEE
Q 047744 71 IKFRIMDTELLTD---GGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSND--KELIEVKPAPYNVLLEDDTYKGQIVIG 145 (151)
Q Consensus 71 L~v~v~d~~~~~~---d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~G~i~~~ 145 (151)
|.|+|||++..++ +++||++. +++.++....... ..|+.+..++ ..+...|+|.+.
T Consensus 75 L~v~V~D~~~~~~~~~~d~lG~~~--------------i~l~~l~~~~~~~~~~~~~~l~k~~-----~~s~v~G~~~l~ 135 (137)
T cd08691 75 LEIEVKDKFAKSRPIIRRFLGKLS--------------IPVQRLLERHAIGDQELSYTLGRRT-----PTDHVSGQLTFR 135 (137)
T ss_pred EEEEEEecCCCCCccCCceEEEEE--------------EEHHHhcccccCCceEEEEECCcCC-----CCCcEEEEEEEE
Confidence 9999999865443 79999999 9999997554331 2334443222 245677998875
Q ss_pred E
Q 047744 146 F 146 (151)
Q Consensus 146 ~ 146 (151)
+
T Consensus 136 ~ 136 (137)
T cd08691 136 F 136 (137)
T ss_pred e
Confidence 4
No 80
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.79 E-value=9.1e-19 Score=119.24 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=75.3
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC------eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEE
Q 047744 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN------QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRI 75 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v 75 (151)
..++|.|+|++|++|+..+..+.+||||++.+.. .+++|++.+ ++.||+|||+|.|.++..+ +....|.|+|
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~-~t~nPvfnEtF~f~i~~~~-l~~~~L~~~V 90 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRR-GQPDPEFKETFVFQVALFQ-LSEVTLMFSV 90 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeec-CCCCCcEeeeEEEECCHHH-hCccEEEEEE
Confidence 3689999999999999998888999999998842 235777765 6899999999999987633 3567899999
Q ss_pred EECCCCCCCcccEEEE
Q 047744 76 MDTELLTDGGFVGETV 91 (151)
Q Consensus 76 ~d~~~~~~d~~iG~~~ 91 (151)
||++.++++++||++.
T Consensus 91 ~~~~~~~~~~~iG~v~ 106 (138)
T cd08408 91 YNKRKMKRKEMIGWFS 106 (138)
T ss_pred EECCCCCCCcEEEEEE
Confidence 9999999999999999
No 81
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.79 E-value=1.7e-18 Score=116.70 Aligned_cols=104 Identities=18% Similarity=0.252 Sum_probs=85.7
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
.+.|.|+|++|++|+..+..+..||||++.+.+ ...+|++++ ++.+|.|||+|.|.+...+ ....|.|+|||
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~-~~~~P~wne~f~~~~~~~~--~~~~l~v~v~d 88 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIK-KTLNPVWNETFTFDLKPAD--KDRRLSIEVWD 88 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeec-CCCCCCccceEEEeCCchh--cCCEEEEEEEE
Confidence 478999999999999888888899999999853 457787765 6899999999999877543 35689999999
Q ss_pred CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeee
Q 047744 78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVK 125 (151)
Q Consensus 78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~ 125 (151)
++.++++++||++. ++++++... .. ..|+.|.
T Consensus 89 ~~~~~~~~~iG~~~--------------~~l~~l~~~-~~-~~w~~L~ 120 (131)
T cd04026 89 WDRTTRNDFMGSLS--------------FGVSELIKM-PV-DGWYKLL 120 (131)
T ss_pred CCCCCCcceeEEEE--------------EeHHHhCcC-cc-CceEECc
Confidence 99888999999999 998888743 33 5666654
No 82
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.79 E-value=1.3e-18 Score=117.90 Aligned_cols=88 Identities=16% Similarity=0.275 Sum_probs=73.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM 76 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~ 76 (151)
..+.|+|+|++|++|+..+..+.+||||++.+.. ...+|++. .++.||.|||+|.|.++... .....|.|+||
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~-~~t~nP~wne~f~f~i~~~~-~~~~~l~~~v~ 89 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVK-KNTLNPTYNEALVFDVPPEN-VDNVSLIIAVV 89 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcc-cCCCCCcccceEEEECCHHH-hCCCEEEEEEE
Confidence 4689999999999999999899999999998742 23566655 46899999999999876532 13356999999
Q ss_pred ECCCCCCCcccEEEE
Q 047744 77 DTELLTDGGFVGETV 91 (151)
Q Consensus 77 d~~~~~~d~~iG~~~ 91 (151)
|++.++++++||++.
T Consensus 90 d~~~~~~~~~IG~~~ 104 (134)
T cd08403 90 DYDRVGHNELIGVCR 104 (134)
T ss_pred ECCCCCCCceeEEEE
Confidence 999999999999999
No 83
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.79 E-value=1.1e-18 Score=118.39 Aligned_cols=87 Identities=22% Similarity=0.375 Sum_probs=73.3
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC--C---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCG--N---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
.++|.|+|++|++|+..+..+.+||||++.+. + ...+|++++ ++.||.|||+|.|.++... +....|.|+|||
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~F~f~i~~~~-~~~~~l~~~v~d 91 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKK-RTLNPVFNESFIFNIPLER-LRETTLIITVMD 91 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCccee-CCCCCcccceEEEeCCHHH-hCCCEEEEEEEE
Confidence 57899999999999998888999999999873 2 245777765 6899999999999876422 134689999999
Q ss_pred CCCCCCCcccEEEE
Q 047744 78 TELLTDGGFVGETV 91 (151)
Q Consensus 78 ~~~~~~d~~iG~~~ 91 (151)
++.++++++||++.
T Consensus 92 ~~~~~~~~~lG~~~ 105 (136)
T cd08405 92 KDRLSRNDLIGKIY 105 (136)
T ss_pred CCCCCCCcEeEEEE
Confidence 99999999999999
No 84
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.78 E-value=6e-19 Score=120.03 Aligned_cols=86 Identities=16% Similarity=0.256 Sum_probs=73.2
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
.+.|.|.|++|++|+..+ .+.+||||++.+.. .+++|++.+ ++.||.|||+|.|.++..+ +....|.|+|||
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~-~~~nP~fnE~F~f~i~~~~-l~~~~L~~~V~~ 90 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVD-GAASPSFNESFSFKVTSRQ-LDTASLSLSVMQ 90 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEe-CCCCCcccceEEEECCHHH-hCccEEEEEEEe
Confidence 578999999999999888 78899999998753 245677654 7999999999999987543 245789999999
Q ss_pred CCCCCCCcccEEEE
Q 047744 78 TELLTDGGFVGETV 91 (151)
Q Consensus 78 ~~~~~~d~~iG~~~ 91 (151)
++..+++++||++.
T Consensus 91 ~~~~~~~~~lG~v~ 104 (137)
T cd08409 91 SGGVRKSKLLGRVV 104 (137)
T ss_pred CCCCCCcceEEEEE
Confidence 99999999999999
No 85
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.78 E-value=1.5e-18 Score=117.72 Aligned_cols=88 Identities=17% Similarity=0.321 Sum_probs=73.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM 76 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~ 76 (151)
..|.|.|+|++|++|+..+..+.+||||++.+.. +.++|++.+ ++.||.|||+|.|.++..+ +....|.|+||
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wnE~F~f~i~~~~-l~~~~l~~~V~ 89 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMR-GTIDPFYNESFSFKVPQEE-LENVSLVFTVY 89 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCcccc-CCCCCccceeEEEeCCHHH-hCCCEEEEEEE
Confidence 4589999999999999999889999999998732 235666654 6999999999999986533 13457999999
Q ss_pred ECCCCCCCcccEEEE
Q 047744 77 DTELLTDGGFVGETV 91 (151)
Q Consensus 77 d~~~~~~d~~iG~~~ 91 (151)
|++..+++++||++.
T Consensus 90 d~d~~~~~~~iG~~~ 104 (135)
T cd08410 90 GHNVKSSNDFIGRIV 104 (135)
T ss_pred eCCCCCCCcEEEEEE
Confidence 999999999999998
No 86
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.78 E-value=3e-18 Score=113.98 Aligned_cols=97 Identities=15% Similarity=0.341 Sum_probs=78.8
Q ss_pred EEEEeeCCCCCCCCCCCCEEEEEEECCee-------eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCC-
Q 047744 9 LLVNAEGIKHTNIFGTPSYYVIARCGNQE-------HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTEL- 80 (151)
Q Consensus 9 ~v~~a~~L~~~~~~~~~dpyv~v~~~~~~-------~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~- 80 (151)
..++|++|+..+..+.+||||++.+.+.. .+|++++ ++.||+|||+|.|.+... ....|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~-~t~nP~wne~f~f~~~~~---~~~~l~~~V~d~d~~ 80 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIK-NNLNPDFVTTFTVDYYFE---EVQKLRFEVYDVDSK 80 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeC-CCCCCCceEEEEEEEEeE---eeeEEEEEEEEecCC
Confidence 34889999999988999999999986543 6787775 699999999999986542 34689999999997
Q ss_pred ---CCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeee
Q 047744 81 ---LTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEV 124 (151)
Q Consensus 81 ---~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l 124 (151)
++++++||++. +++.++...... ..++.|
T Consensus 81 ~~~~~~~d~iG~~~--------------i~l~~l~~~~~~-~~~~~l 112 (120)
T cd04048 81 SKDLSDHDFLGEAE--------------CTLGEIVSSPGQ-KLTLPL 112 (120)
T ss_pred cCCCCCCcEEEEEE--------------EEHHHHhcCCCc-EEEEEc
Confidence 78999999999 999999865544 344444
No 87
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.78 E-value=1.1e-19 Score=140.54 Aligned_cols=94 Identities=21% Similarity=0.297 Sum_probs=82.0
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM 76 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~ 76 (151)
....|.|+|.+|++|.+.|-.|-+||||++++-. .+++|++++ .++||+|||+|.|++.+.+ .++.|.|+||
T Consensus 178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik-~~LNP~wNEtftf~Lkp~D--kdrRlsiEvW 254 (683)
T KOG0696|consen 178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIK-ATLNPVWNETFTFKLKPSD--KDRRLSIEVW 254 (683)
T ss_pred cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhh-hhcCccccceeEEeccccc--ccceeEEEEe
Confidence 3567899999999999999999999999998842 356777776 6999999999999998876 6789999999
Q ss_pred ECCCCCCCcccEEEEEeccccc
Q 047744 77 DTELLTDGGFVGETVFSYIHDQ 98 (151)
Q Consensus 77 d~~~~~~d~~iG~~~~~~~~~~ 98 (151)
|||..+++||||..+|.+++++
T Consensus 255 DWDrTsRNDFMGslSFgisEl~ 276 (683)
T KOG0696|consen 255 DWDRTSRNDFMGSLSFGISELQ 276 (683)
T ss_pred cccccccccccceecccHHHHh
Confidence 9999999999999996666665
No 88
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.78 E-value=4.4e-18 Score=114.71 Aligned_cols=87 Identities=11% Similarity=0.224 Sum_probs=71.8
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCC-CCCeeceEEEEEEeCCCccccceEEEEE
Q 047744 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKG-EKAWWNEKFIFEFPMSDWKLLTHIKFRI 75 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~-~nP~wne~f~f~v~~~~~~~~~~L~v~v 75 (151)
..|+|.|.|++|++|+.....+..||||++.+-. .++||++.+ ++ .+|+|||+|.|+++... .+..|.++|
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k-~t~~~P~fNEsF~Fdv~~~~--~~v~l~v~v 88 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVK-SSNGQVKWGETMIFPVTQQE--HGIQFLIKL 88 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEE-CCCCCceecceEEEeCCchh--heeEEEEEE
Confidence 4689999999999999876566789999998732 346676665 46 46999999999998743 467899999
Q ss_pred EECCCCCCCcccEEEE
Q 047744 76 MDTELLTDGGFVGETV 91 (151)
Q Consensus 76 ~d~~~~~~d~~iG~~~ 91 (151)
||++..+++++||++.
T Consensus 89 ~d~~~~~~n~~IG~v~ 104 (135)
T cd08692 89 YSRSSVRRKHFLGQVW 104 (135)
T ss_pred EeCCCCcCCceEEEEE
Confidence 9999999999999999
No 89
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.77 E-value=5.7e-18 Score=113.03 Aligned_cols=98 Identities=19% Similarity=0.252 Sum_probs=79.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-----CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCG-----NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM 76 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~ 76 (151)
..+.|+|+|++|++|+..+..+.+||||++.+. ....+|++++ ++.||.|||+|.|.......+....|.|+||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~-~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVH-KTRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeec-CCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 357899999999999998888899999999873 2357887775 6899999999999633322113468999999
Q ss_pred ECCCCCCCcccEEEEEeccccccccceeeeecCcccccC
Q 047744 77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQ 115 (151)
Q Consensus 77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~ 115 (151)
|++.+ ++++||++. ++++++....
T Consensus 92 d~~~~-~~~~iG~~~--------------i~l~~l~~~~ 115 (123)
T cd04035 92 DEDRF-GNDFLGETR--------------IPLKKLKPNQ 115 (123)
T ss_pred EcCCc-CCeeEEEEE--------------EEcccCCCCc
Confidence 99988 889999999 9999887544
No 90
>PLN03008 Phospholipase D delta
Probab=99.77 E-value=6.7e-18 Score=139.93 Aligned_cols=123 Identities=18% Similarity=0.297 Sum_probs=97.2
Q ss_pred CcEEEEEEEEeeCCCCCCC------------------------------------------CCCCCEEEEEEECCee-eE
Q 047744 3 GGILEVLLVNAEGIKHTNI------------------------------------------FGTPSYYVIARCGNQE-HR 39 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~------------------------------------------~~~~dpyv~v~~~~~~-~~ 39 (151)
+|+|.++|.+|++|++.|. .+++||||++.+++++ .|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 6899999999999975221 2357999999998764 47
Q ss_pred EeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcc
Q 047744 40 SKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDK 119 (151)
Q Consensus 40 T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~ 119 (151)
|++.+ ++.||+|||+|.|.+... ...|.|+|||+|.++. ++||++. +|+.++...... .
T Consensus 93 TrVi~-n~~NPvWNE~F~f~vah~----~s~L~f~VkD~D~~ga-D~IG~a~--------------IPL~~L~~Ge~v-d 151 (868)
T PLN03008 93 TRVLK-NSQEPLWDEKFNISIAHP----FAYLEFQVKDDDVFGA-QIIGTAK--------------IPVRDIASGERI-S 151 (868)
T ss_pred EEeCC-CCCCCCcceeEEEEecCC----CceEEEEEEcCCccCC-ceeEEEE--------------EEHHHcCCCCce-E
Confidence 87764 689999999999998873 4689999999999974 7999999 999998876555 6
Q ss_pred eeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744 120 ELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV 150 (151)
Q Consensus 120 ~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~ 150 (151)
.|+.|....- +..+..|+|.|+++|.|
T Consensus 152 ~Wl~Ll~~~~----kp~k~~~kl~v~lqf~p 178 (868)
T PLN03008 152 GWFPVLGASG----KPPKAETAIFIDMKFTP 178 (868)
T ss_pred EEEEccccCC----CCCCCCcEEEEEEEEEE
Confidence 7777653321 12334589999999987
No 91
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.77 E-value=2.3e-17 Score=110.53 Aligned_cols=115 Identities=15% Similarity=0.276 Sum_probs=87.4
Q ss_pred EEEEEEEEeeCCCCCC--CCCCCCEEEEEEEC------CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744 5 ILEVLLVNAEGIKHTN--IFGTPSYYVIARCG------NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM 76 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~--~~~~~dpyv~v~~~------~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~ 76 (151)
.|+|+|++|++|+..+ ..+..||||++++. ....+|++....+.||.|||+|.|.+...+ ...|.|+||
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~---~~~l~~~V~ 79 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE---LAFLRFVVY 79 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC---eEEEEEEEE
Confidence 6899999999999887 57789999999983 455788776644459999999999987543 357999999
Q ss_pred ECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCC--ccceEEEEEEEE
Q 047744 77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDD--TYKGQIVIGFKF 148 (151)
Q Consensus 77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~G~i~~~~~~ 148 (151)
|++.. ++++||++. +++.++.. + ..+..|. .+.+ ...|.|.+.+++
T Consensus 80 d~~~~-~~~~iG~~~--------------~~l~~l~~-g---~~~~~l~-------~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 80 DEDSG-DDDFLGQAC--------------LPLDSLRQ-G---YRHVPLL-------DSKGEPLELSTLFVHIDI 127 (128)
T ss_pred eCCCC-CCcEeEEEE--------------EEhHHhcC-c---eEEEEec-------CCCCCCCcceeEEEEEEE
Confidence 99987 899999999 99888732 1 1233332 2233 346888888765
No 92
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.76 E-value=4.8e-17 Score=111.33 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=92.6
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeee-EEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCC-C
Q 047744 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEH-RSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTEL-L 81 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~-~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~-~ 81 (151)
..|.|.|++|++|+.++ +|||.+.+++... ||++.. ++.||.|+|.|.|.... ....|.|.||+.+. .
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~-~~~nP~W~E~F~f~~~~----~~~~l~v~v~k~~~~~ 80 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKL-KTDTLFWGEHFEFSNLP----PVSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEc-CCCCCcceeeEEecCCC----cccEEEEEEEEccCcc
Confidence 57899999999998765 7999999999874 887765 68999999999996554 23679999987643 2
Q ss_pred C---CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeecccccee---cCCCccceEEEEEEEEEe
Q 047744 82 T---DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVL---LEDDTYKGQIVIGFKFIV 150 (151)
Q Consensus 82 ~---~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~G~i~~~~~~~~ 150 (151)
+ ++++||.+. ||+.++...... +.|+.+.+..-.-. .......|.|+|.++|.+
T Consensus 81 ~~~~~~~~IG~V~--------------Ip~~~l~~~~~v-e~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 81 KKKDKSQLIGTVN--------------IPVTDVSSRQFV-EKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred ccccCCcEEEEEE--------------EEHHHhcCCCcc-cEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 2 578999999 999999865554 88988876543210 000123489999999975
No 93
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.76 E-value=3.1e-18 Score=115.58 Aligned_cols=93 Identities=15% Similarity=0.217 Sum_probs=78.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-----eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-----EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM 76 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-----~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~ 76 (151)
..+.|.|+|++|++|+..+..+.+||||++.+... ..+|++.. ++.||.|||+|.|.+.... +....|.|+||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~~~~P~wne~f~f~i~~~~-l~~~~l~~~v~ 89 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK-GTLNPVFNEAFSFDVPAEQ-LEEVSLVITVV 89 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCccee-cCCCCeeeeeEEEECCHHH-hCCcEEEEEEE
Confidence 35899999999999999888889999999988542 45677665 6899999999999987632 12478999999
Q ss_pred ECCCCCCCcccEEEEEeccccccccceeeeecCc
Q 047744 77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGG 110 (151)
Q Consensus 77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~ 110 (151)
|.+.++++++||++. +++++
T Consensus 90 d~~~~~~~~~lG~~~--------------i~l~~ 109 (134)
T cd00276 90 DKDSVGRNEVIGQVV--------------LGPDS 109 (134)
T ss_pred ecCCCCCCceeEEEE--------------ECCCC
Confidence 999888999999999 88888
No 94
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.75 E-value=4.5e-17 Score=107.22 Aligned_cols=75 Identities=16% Similarity=0.330 Sum_probs=63.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC--
Q 047744 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT-- 78 (151)
Q Consensus 6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~-- 78 (151)
|.|+|++|+||+ +.+||||.+.+.. ...+|++++ ++.||+|||+|.|++.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~-~TlnPvWnE~F~i~l~~-----s~~L~~~v~d~~~ 69 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCR-DTTEPNWNEEFEIELEG-----SQTLRILCYEKCY 69 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeec-CCCCCccceEEEEEeCC-----CCEEEEEEEEccc
Confidence 689999999996 3589999998853 347888875 69999999999999864 46999999998
Q ss_pred -----CCCCCCcccEEEE
Q 047744 79 -----ELLTDGGFVGETV 91 (151)
Q Consensus 79 -----~~~~~d~~iG~~~ 91 (151)
+..+.|+.||.+.
T Consensus 70 ~~~~~d~~~~d~~~G~g~ 87 (118)
T cd08686 70 SKVKLDGEGTDAIMGKGQ 87 (118)
T ss_pred ccccccccCcccEEEEEE
Confidence 4668899998888
No 95
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.71 E-value=2.2e-16 Score=103.37 Aligned_cols=91 Identities=13% Similarity=0.193 Sum_probs=71.8
Q ss_pred EEEEEeeCCCCCCCCCCCCEEEEEEECCe------eeEEeeeeCCCCCCeeceEEEEEEeCCC-ccccceEEEEEEECCC
Q 047744 8 VLLVNAEGIKHTNIFGTPSYYVIARCGNQ------EHRSKNSMVKGEKAWWNEKFIFEFPMSD-WKLLTHIKFRIMDTEL 80 (151)
Q Consensus 8 V~v~~a~~L~~~~~~~~~dpyv~v~~~~~------~~~T~~~~~~~~nP~wne~f~f~v~~~~-~~~~~~L~v~v~d~~~ 80 (151)
+..++|++|+..+..+.+||||++.+.+. .++|++++ ++.||+|| +|.|...... ......|.|+|||++.
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~-~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIK-NTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEec-cCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 45679999999999999999999987543 47888776 68999999 6766543211 0025789999999999
Q ss_pred CCCCcccEEEEEeccccccccceeeeecCccccc
Q 047744 81 LTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITD 114 (151)
Q Consensus 81 ~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~ 114 (151)
+++|++||++. ++++++...
T Consensus 82 ~~~d~~iG~~~--------------~~l~~l~~~ 101 (110)
T cd04047 82 SGKHDLIGEFE--------------TTLDELLKS 101 (110)
T ss_pred CCCCcEEEEEE--------------EEHHHHhcC
Confidence 99999999999 888888743
No 96
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.68 E-value=3.2e-16 Score=97.11 Aligned_cols=82 Identities=23% Similarity=0.431 Sum_probs=70.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEECC---eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGN---QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT 82 (151)
Q Consensus 6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~ 82 (151)
|+|+|++|++|+..+..+..+||+++.+.+ ...+|++.. ++.+|.|+|+|.|.+...+ ...|.|+|||.+..+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~---~~~l~~~V~~~~~~~ 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKK-NTSNPVWNEEFEFPLDDPD---LDSLSFEVWDKDSFG 76 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBS-SBSSEEEEEEEEEEESHGC---GTEEEEEEEEETSSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeee-ccccceeeeeeeeeeeccc---ccceEEEEEECCCCC
Confidence 789999999999988788999999999976 557787765 5799999999999976654 345999999999999
Q ss_pred CCcccEEEE
Q 047744 83 DGGFVGETV 91 (151)
Q Consensus 83 ~d~~iG~~~ 91 (151)
+|++||++.
T Consensus 77 ~~~~iG~~~ 85 (85)
T PF00168_consen 77 KDELIGEVK 85 (85)
T ss_dssp SEEEEEEEE
T ss_pred CCCEEEEEC
Confidence 899999974
No 97
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.58 E-value=8.5e-15 Score=118.53 Aligned_cols=122 Identities=16% Similarity=0.290 Sum_probs=105.4
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL 81 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~ 81 (151)
...|.|.|.+|++|+..+..|..||||.+.++... .||.++- +++.|.|.|.|.|+++. .-+.|.|.|||.| +
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~-ksL~PF~gEe~~~~iP~----~F~~l~fYv~D~d-~ 77 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVE-KSLCPFFGEEFYFEIPR----TFRYLSFYVWDRD-L 77 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhh-hhcCCccccceEEecCc----ceeeEEEEEeccc-c
Confidence 35789999999999999999999999999998654 6777664 69999999999999987 5689999999999 9
Q ss_pred CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744 82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV 150 (151)
Q Consensus 82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~ 150 (151)
++|+.||.+. |.=+++..-... +.|+.|+|. +++.+..|+|++++.+.+
T Consensus 78 ~~D~~IGKva--------------i~re~l~~~~~~-d~W~~L~~V-----D~dsEVQG~v~l~l~~~e 126 (800)
T KOG2059|consen 78 KRDDIIGKVA--------------IKREDLHMYPGK-DTWFSLQPV-----DPDSEVQGKVHLELALTE 126 (800)
T ss_pred ccccccceee--------------eeHHHHhhCCCC-ccceecccc-----CCChhhceeEEEEEEecc
Confidence 9999999999 888888765554 899999876 367789999999998854
No 98
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=7.1e-15 Score=118.64 Aligned_cols=118 Identities=22% Similarity=0.346 Sum_probs=92.2
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC-
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL- 81 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~- 81 (151)
...+.++|++|+||..+|..|++||||...++..+++|+++. +.+||+|||.|.|+.+++ ...+++.|||.|..
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~-~~lnpvw~ekfhfechns----tdrikvrvwded~dl 368 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIH-QELNPVWNEKFHFECHNS----TDRIKVRVWDEDNDL 368 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhh-hccchhhhhheeeeecCC----CceeEEEEecCcccH
Confidence 346789999999999999999999999999998888998876 589999999999999985 46899999998742
Q ss_pred ----------CCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEE
Q 047744 82 ----------TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFK 147 (151)
Q Consensus 82 ----------~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~ 147 (151)
.+|||+|+.. |.+..+. +.. +-|+.|..+.- +.-..|-|++.+.
T Consensus 369 ksklrqkl~resddflgqtv--------------ievrtls--gem-dvwynlekrtd-----ksavsgairlhis 422 (1283)
T KOG1011|consen 369 KSKLRQKLTRESDDFLGQTV--------------IEVRTLS--GEM-DVWYNLEKRTD-----KSAVSGAIRLHIS 422 (1283)
T ss_pred HHHHHHHhhhccccccccee--------------EEEEecc--cch-hhhcchhhccc-----hhhccceEEEEEE
Confidence 4689999999 8777763 333 56776654432 1123466655543
No 99
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.55 E-value=1.3e-13 Score=92.95 Aligned_cols=86 Identities=19% Similarity=0.404 Sum_probs=69.0
Q ss_pred EEEEEEEEeeCCCCC--CCCCC--CCEEEEEEECC---eeeEEeeeeCCCCC--CeeceEEEEEEeCC------------
Q 047744 5 ILEVLLVNAEGIKHT--NIFGT--PSYYVIARCGN---QEHRSKNSMVKGEK--AWWNEKFIFEFPMS------------ 63 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~--~~~~~--~dpyv~v~~~~---~~~~T~~~~~~~~n--P~wne~f~f~v~~~------------ 63 (151)
.|+|.|.+|++++.. +..|. +||||+..+.+ .+++|.++. ++.| |.||+.|.|.+...
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHy-rslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHY-RSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEE-ecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 389999999996543 33564 99999998865 457888876 6888 99999999977652
Q ss_pred --------CccccceEEEEEEECCCCCCCcccEEEE
Q 047744 64 --------DWKLLTHIKFRIMDTELLTDGGFVGETV 91 (151)
Q Consensus 64 --------~~~~~~~L~v~v~d~~~~~~d~~iG~~~ 91 (151)
+.+....|.+.|||.|.+++|++||+++
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~ 115 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLE 115 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccCCCCcceEEE
Confidence 1124578999999999999999999999
No 100
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.54 E-value=1.4e-13 Score=87.08 Aligned_cols=92 Identities=21% Similarity=0.420 Sum_probs=76.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe---eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ---EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL 81 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~---~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~ 81 (151)
+|.|.|++|++|......+..+|||++.+... ..+|+... ++.+|.|||.|.|.+.... ...|.|+|||.+..
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~---~~~l~i~v~~~~~~ 76 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVK-NTLNPVWNETFEFEVPPPE---LAELEIEVYDKDRF 76 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEec-CCCCCcccceEEEEecCcc---cCEEEEEEEecCCc
Confidence 47899999999988876667999999999765 67787765 5679999999999887631 57899999999987
Q ss_pred CCCcccEEEEEeccccccccceeeeecCccccc
Q 047744 82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIITD 114 (151)
Q Consensus 82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~ 114 (151)
+.+.++|.+. +++.++...
T Consensus 77 ~~~~~~G~~~--------------~~l~~~~~~ 95 (101)
T smart00239 77 GRDDFIGQVT--------------IPLSDLLLG 95 (101)
T ss_pred cCCceeEEEE--------------EEHHHcccC
Confidence 7889999999 887777543
No 101
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.53 E-value=7.7e-14 Score=118.19 Aligned_cols=122 Identities=20% Similarity=0.360 Sum_probs=99.8
Q ss_pred CCcEEEEEEEEeeCCCCCC--CCCCCCEEEEEEECCe-eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744 2 KGGILEVLLVNAEGIKHTN--IFGTPSYYVIARCGNQ-EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT 78 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~--~~~~~dpyv~v~~~~~-~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~ 78 (151)
+.|+|.|+|.+|++|+..+ ..+..|||+.+..... ..||++.+ ++.||+|||+|...+.. ..+.|.++|||.
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~-nt~nPvwNEt~Yi~lns----~~d~L~LslyD~ 508 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKK-NTLNPVWNETFYILLNS----FTDPLNLSLYDF 508 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceee-ccCCccccceEEEEecc----cCCceeEEEEec
Confidence 5699999999999999888 5678999999987543 34777765 69999999999887775 568999999999
Q ss_pred CCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744 79 ELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV 150 (151)
Q Consensus 79 ~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~ 150 (151)
+.+.+|+.+|.+. ++|..+..+... ....|.++ .+.+..|++...++|.|
T Consensus 509 n~~~sd~vvG~~~--------------l~L~~L~~~~~~-------~ne~~e~~-~~~k~vGrL~yDl~ffp 558 (1227)
T COG5038 509 NSFKSDKVVGSTQ--------------LDLALLHQNPVK-------KNELYEFL-RNTKNVGRLTYDLRFFP 558 (1227)
T ss_pred cccCCcceeeeEE--------------echHHhhhcccc-------ccceeeee-ccCccceEEEEeeeeec
Confidence 9899999999999 999998876655 12233333 46778899999999987
No 102
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.52 E-value=2.8e-13 Score=85.33 Aligned_cols=89 Identities=21% Similarity=0.375 Sum_probs=75.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEECC-eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCC
Q 047744 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGN-QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDG 84 (151)
Q Consensus 6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d 84 (151)
|.|.|++|++|.........+|||.+.+.. ...+|.... ++.||.|+|.|.|.+... ....|.|+||+.+..+.+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~-~~~~P~w~~~~~~~~~~~---~~~~l~i~v~~~~~~~~~ 76 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVK-NTLNPVWNETFEFPVLDP---ESDTLTVEVWDKDRFSKD 76 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeC-CCCCCcccceEEEEccCC---CCCEEEEEEEecCCCCCC
Confidence 578999999998766667899999999987 777787665 579999999999988762 246899999999988888
Q ss_pred cccEEEEEeccccccccceeeeecCccc
Q 047744 85 GFVGETVFSYIHDQTSVNQCRYYLGGII 112 (151)
Q Consensus 85 ~~iG~~~~~~~~~~~~~~~~~i~l~~~~ 112 (151)
++||.+. +++..+.
T Consensus 77 ~~ig~~~--------------~~l~~l~ 90 (102)
T cd00030 77 DFLGEVE--------------IPLSELL 90 (102)
T ss_pred ceeEEEE--------------EeHHHhh
Confidence 9999999 8877776
No 103
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=7.6e-14 Score=110.49 Aligned_cols=88 Identities=19% Similarity=0.375 Sum_probs=74.1
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM 76 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~ 76 (151)
+.|.|.|.|++|++|+..+..+..||||++.+.. .+++|.+ +.++.||+|||+|.|.++... +....|.++||
T Consensus 296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~-~~~~~npv~nesf~F~vp~~~-l~~~~l~l~V~ 373 (421)
T KOG1028|consen 296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSV-KKKTLNPVFNETFVFDVPPEQ-LAEVSLELTVW 373 (421)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeec-ccCCCCCcccccEEEeCCHHH-hheeEEEEEEE
Confidence 3689999999999999999999999999997632 2344544 457999999999999888644 35668999999
Q ss_pred ECCCCCCCcccEEEE
Q 047744 77 DTELLTDGGFVGETV 91 (151)
Q Consensus 77 d~~~~~~d~~iG~~~ 91 (151)
|++.++++++||.+.
T Consensus 374 d~d~~~~~~~iG~~~ 388 (421)
T KOG1028|consen 374 DHDTLGSNDLIGRCI 388 (421)
T ss_pred EcccccccceeeEEE
Confidence 999999999999888
No 104
>PLN02223 phosphoinositide phospholipase C
Probab=99.47 E-value=1.6e-12 Score=104.31 Aligned_cols=91 Identities=25% Similarity=0.402 Sum_probs=73.3
Q ss_pred cEEEEEEEEeeCCCC-----CCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEE
Q 047744 4 GILEVLLVNAEGIKH-----TNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKF 73 (151)
Q Consensus 4 g~L~V~v~~a~~L~~-----~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v 73 (151)
.+|.|+|++|++++. .+.....||||++.+.+ ...+|+ +.+++.||+|||+|.|.+..++ -..|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~-v~nNg~nPvWne~F~F~i~~PE---LAlLrf 484 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTT-VKNNEWKPTWGEEFTFPLTYPD---LALISF 484 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEE-eCCCCcCceecceeEEEEEccC---ceEEEE
Confidence 579999999998741 12335689999999854 245564 5578999999999999988764 367999
Q ss_pred EEEECCCCCCCcccEEEEEeccccccccceeeeecCccc
Q 047744 74 RIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGII 112 (151)
Q Consensus 74 ~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~ 112 (151)
+|+|+|..+.|+|+|+.. +|+..+.
T Consensus 485 ~V~D~D~~~~ddfiGQ~~--------------LPv~~Lr 509 (537)
T PLN02223 485 EVYDYEVSTADAFCGQTC--------------LPVSELI 509 (537)
T ss_pred EEEecCCCCCCcEEEEEe--------------cchHHhc
Confidence 999999888999999999 8888885
No 105
>PLN02952 phosphoinositide phospholipase C
Probab=99.40 E-value=9.1e-12 Score=101.64 Aligned_cols=92 Identities=16% Similarity=0.337 Sum_probs=73.3
Q ss_pred CcEEEEEEEEeeCCCCC------CCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceE
Q 047744 3 GGILEVLLVNAEGIKHT------NIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHI 71 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~------~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L 71 (151)
..+|.|+|++|++++.. +.....||||++.+.+ .+.+|+++. ++.||+|||+|.|.+..++ -..|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~-nN~nPvWnE~F~F~i~~PE---LAll 544 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIE-DNWYPAWNEEFSFPLTVPE---LALL 544 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeecc-CCCCcccCCeeEEEEEcCC---ccEE
Confidence 35799999999887421 1223469999998753 456788776 4699999999999888754 3578
Q ss_pred EEEEEECCCCCCCcccEEEEEeccccccccceeeeecCccc
Q 047744 72 KFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGII 112 (151)
Q Consensus 72 ~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~ 112 (151)
+|+|||+|..+.++|+|++. +|+..+.
T Consensus 545 rf~V~D~D~~~~ddfiGq~~--------------lPv~~Lr 571 (599)
T PLN02952 545 RIEVREYDMSEKDDFGGQTC--------------LPVSELR 571 (599)
T ss_pred EEEEEecCCCCCCCeEEEEE--------------cchhHhc
Confidence 99999999888999999999 9988885
No 106
>PLN02270 phospholipase D alpha
Probab=99.39 E-value=9.3e-12 Score=103.67 Aligned_cols=121 Identities=13% Similarity=0.252 Sum_probs=94.8
Q ss_pred CcEEEEEEEEeeCCCCCC------------------CCCCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCC
Q 047744 3 GGILEVLLVNAEGIKHTN------------------IFGTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMS 63 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~------------------~~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~ 63 (151)
+|+|.|+|.+|++|++.+ ..+.+||||.+.+.+.+ .||+++.+...||.|+|.|...+..
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah- 85 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH- 85 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc-
Confidence 799999999999998621 01357999999998765 5888775435799999999998877
Q ss_pred CccccceEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccc---e
Q 047744 64 DWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYK---G 140 (151)
Q Consensus 64 ~~~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---G 140 (151)
....+.|+|.|.+.++.. +||.+. +|+.++++.... ++|+.+. ..++++. .
T Consensus 86 ---~~~~v~f~vkd~~~~g~~-~ig~~~--------------~p~~~~~~g~~i-~~~~~~~-------~~~~~p~~~~~ 139 (808)
T PLN02270 86 ---MASNIIFTVKDDNPIGAT-LIGRAY--------------IPVEEILDGEEV-DRWVEIL-------DNDKNPIHGGS 139 (808)
T ss_pred ---CcceEEEEEecCCccCce-EEEEEE--------------EEHHHhcCCCcc-ccEEecc-------CCCCCcCCCCC
Confidence 347899999999988764 999999 999999876654 7776654 3344432 4
Q ss_pred EEEEEEEEEe
Q 047744 141 QIVIGFKFIV 150 (151)
Q Consensus 141 ~i~~~~~~~~ 150 (151)
+|.++++|.|
T Consensus 140 ~~~~~~~f~~ 149 (808)
T PLN02270 140 KIHVKLQYFE 149 (808)
T ss_pred EEEEEEEEEE
Confidence 8999999986
No 107
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.38 E-value=6.8e-12 Score=102.93 Aligned_cols=91 Identities=19% Similarity=0.375 Sum_probs=76.1
Q ss_pred EEEEEEEEeeCCCC-CCCC---CCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEE
Q 047744 5 ILEVLLVNAEGIKH-TNIF---GTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRI 75 (151)
Q Consensus 5 ~L~V~v~~a~~L~~-~~~~---~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v 75 (151)
+|.|.|++++++.. .+.. ...||||.+++.+ ...+|+++++++-||.|+|+|.|.+..++ -.-|+|.|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPE---LAliRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPE---LALIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccc---eeEEEEEE
Confidence 79999999996643 3322 3489999998865 35789888889999999999999998875 36799999
Q ss_pred EECCCCCCCcccEEEEEeccccccccceeeeecCccc
Q 047744 76 MDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGII 112 (151)
Q Consensus 76 ~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~ 112 (151)
+|+|..++|+|+|++. +|+..+.
T Consensus 694 ~d~d~~~~ddF~GQ~t--------------lP~~~L~ 716 (746)
T KOG0169|consen 694 HDYDYIGKDDFIGQTT--------------LPVSELR 716 (746)
T ss_pred EecCCCCcccccceee--------------ccHHHhh
Confidence 9999999999999999 8888885
No 108
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.35 E-value=2.2e-11 Score=99.35 Aligned_cols=92 Identities=17% Similarity=0.368 Sum_probs=73.3
Q ss_pred CcEEEEEEEEeeCCCC--C----CCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceE
Q 047744 3 GGILEVLLVNAEGIKH--T----NIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHI 71 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~--~----~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L 71 (151)
..+|.|+|+.+++++. . +.....||||++.+.+ .+.+|++. +++.||.|||+|.|.+..++ -..|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~-~n~~nP~Wneef~F~l~vPE---LAll 543 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIE-YDTWTPIWNKEFIFPLAVPE---LALL 543 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceecc-CCCCCCccCCeeEEEEEcCc---eeEE
Confidence 3589999999998641 1 2234579999998843 34577754 57899999999999887754 3789
Q ss_pred EEEEEECCCCCCCcccEEEEEeccccccccceeeeecCccc
Q 047744 72 KFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGII 112 (151)
Q Consensus 72 ~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~ 112 (151)
+|+|+|+|..++|+|+|+.. +|+..+.
T Consensus 544 Rf~V~d~d~~~~ddfiGQ~~--------------lPv~~Lr 570 (598)
T PLN02230 544 RVEVHEHDINEKDDFGGQTC--------------LPVSEIR 570 (598)
T ss_pred EEEEEECCCCCCCCEEEEEE--------------cchHHhh
Confidence 99999999888999999999 8888885
No 109
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.33 E-value=6.3e-12 Score=106.82 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=79.0
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL 81 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~ 81 (151)
.|-|.|.+.+|.+|+..+..|.+||||++.+.++ .++|++++ +++||+|||.+..++... ....+.+.|+|+|..
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~K-ktlNPvwNEe~~i~v~~r---~~D~~~i~v~Dwd~~ 1114 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVK-KTLNPVWNEEFTIEVLNR---VKDVLTINVNDWDSG 1114 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchh-ccCCCCccccceEeeecc---ccceEEEEEeecccC
Confidence 5889999999999999999999999999999877 46776665 799999999999998863 356899999999998
Q ss_pred CCCcccEEEEEeccccc
Q 047744 82 TDGGFVGETVFSYIHDQ 98 (151)
Q Consensus 82 ~~d~~iG~~~~~~~~~~ 98 (151)
.+++.||.+.+++..+.
T Consensus 1115 ~knd~lg~~~idL~~l~ 1131 (1227)
T COG5038 1115 EKNDLLGTAEIDLSKLE 1131 (1227)
T ss_pred CCccccccccccHhhcC
Confidence 99999999995555444
No 110
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.30 E-value=1.1e-11 Score=79.44 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=67.8
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCEEEEEEECCe-eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744 6 LEVLLVNAEGIKHTN---IFGTPSYYVIARCGNQ-EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL 81 (151)
Q Consensus 6 L~V~v~~a~~L~~~~---~~~~~dpyv~v~~~~~-~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~ 81 (151)
|.|+|.+|+++.... +.+++||||.+++++. +.||+. +.||.|||.|.|++. ....+.+.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vd-----k~nEiel~VyDk~~- 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVE-----KNNEEEVIVYDKGG- 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC----CCCCcccceEEEEec-----CCcEEEEEEEeCCC-
Confidence 679999999998877 5678999999999877 667754 479999999999995 34789999999853
Q ss_pred CCCcccEEEEEeccccccccceeeeecCcccc
Q 047744 82 TDGGFVGETVFSYIHDQTSVNQCRYYLGGIIT 113 (151)
Q Consensus 82 ~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~ 113 (151)
...--||..- +.++++..
T Consensus 71 ~~~~Pi~llW--------------~~~sdi~E 88 (109)
T cd08689 71 DQPVPVGLLW--------------LRLSDIAE 88 (109)
T ss_pred Ceecceeeeh--------------hhHHHHHH
Confidence 3334688888 88888763
No 111
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.29 E-value=1.2e-10 Score=94.80 Aligned_cols=92 Identities=17% Similarity=0.322 Sum_probs=73.0
Q ss_pred CcEEEEEEEEeeCCC----C--CCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceE
Q 047744 3 GGILEVLLVNAEGIK----H--TNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHI 71 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~----~--~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L 71 (151)
..+|.|+|+.++++. . .+.....||||++.+.+ .+.+|+++.+ +.||.|||+|.|.+..++ -..|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~n-n~nP~W~e~f~F~i~~Pe---LAll 526 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLED-NWIPAWDEVFEFPLTVPE---LALL 526 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCC-CCCcccCCeeEEEEEcCc---eeEE
Confidence 357999999998752 1 12234589999998853 4568888764 589999999999887754 3689
Q ss_pred EEEEEECCCCCCCcccEEEEEeccccccccceeeeecCccc
Q 047744 72 KFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGII 112 (151)
Q Consensus 72 ~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~ 112 (151)
+|.|||+|..+.|+|+|+.. +|+..+.
T Consensus 527 Rf~V~d~D~~~~ddfigq~~--------------lPv~~Lr 553 (581)
T PLN02222 527 RLEVHEYDMSEKDDFGGQTC--------------LPVWELS 553 (581)
T ss_pred EEEEEECCCCCCCcEEEEEE--------------cchhhhh
Confidence 99999999888899999999 9988885
No 112
>PLN02228 Phosphoinositide phospholipase C
Probab=99.28 E-value=1.4e-10 Score=94.17 Aligned_cols=117 Identities=18% Similarity=0.362 Sum_probs=84.1
Q ss_pred cEEEEEEEEeeCCCC---C---CCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCee-ceEEEEEEeCCCccccceE
Q 047744 4 GILEVLLVNAEGIKH---T---NIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWW-NEKFIFEFPMSDWKLLTHI 71 (151)
Q Consensus 4 g~L~V~v~~a~~L~~---~---~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~w-ne~f~f~v~~~~~~~~~~L 71 (151)
..|.|+|++|++|+. . +.....||||++.+.+ .+.+|+++. ++.||.| ||+|.|.+..++ -..|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~-n~~nP~W~~e~f~F~~~~pE---LA~l 506 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAV-DQWFPIWGNDEFLFQLRVPE---LALL 506 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccC-CCCCceECCCeEEEEEEcCc---eeEE
Confidence 469999999998721 1 1233589999998743 346888775 5789999 999999887754 3689
Q ss_pred EEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCc--cceEEEEEEEEE
Q 047744 72 KFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT--YKGQIVIGFKFI 149 (151)
Q Consensus 72 ~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~G~i~~~~~~~ 149 (151)
+|.|+|+|..+.|+|+|+.. +|+..+. .|+..++ +....|. ....|.+.+.+.
T Consensus 507 Rf~V~D~d~~~~d~figq~~--------------lPv~~Lr------~GYR~Vp-----L~~~~G~~l~~atLfv~~~~~ 561 (567)
T PLN02228 507 WFKVQDYDNDTQNDFAGQTC--------------LPLPELK------SGVRAVR-----LHDRAGKAYKNTRLLVSFALD 561 (567)
T ss_pred EEEEEeCCCCCCCCEEEEEE--------------cchhHhh------CCeeEEE-----ccCCCCCCCCCeEEEEEEEEc
Confidence 99999999888999999999 9998884 3444432 1122333 235677776654
No 113
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.22 E-value=8e-11 Score=97.33 Aligned_cols=92 Identities=16% Similarity=0.339 Sum_probs=74.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-----CeeeEEeeeeCCCCCCeec-eEEEEEEeCCCccccceEEEEEEEC
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCG-----NQEHRSKNSMVKGEKAWWN-EKFIFEFPMSDWKLLTHIKFRIMDT 78 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~nP~wn-e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (151)
+|.|.|+.|++|+... .|-..|||.+.+- ..+++|+++..+++||+|| |.|.|++..++ -..|+|.|+|.
T Consensus 1066 ~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe---~A~lRF~V~ee 1141 (1267)
T KOG1264|consen 1066 TLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE---FAFLRFVVYEE 1141 (1267)
T ss_pred EEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc---eEEEEEEEecc
Confidence 6789999999998554 3446799999874 4567788888899999999 99999999875 47899999999
Q ss_pred CCCCCCcccEEEEEeccccccc
Q 047744 79 ELLTDGGFVGETVFSYIHDQTS 100 (151)
Q Consensus 79 ~~~~~d~~iG~~~~~~~~~~~~ 100 (151)
|.++...|||++.+.+..+.+|
T Consensus 1142 Dmfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1142 DMFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred cccCCcceeeeeecchhhhhcc
Confidence 9999888999999444444333
No 114
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.18 E-value=8.1e-11 Score=94.65 Aligned_cols=123 Identities=15% Similarity=0.210 Sum_probs=96.4
Q ss_pred CcEEEEEEEEeeCCCCCCCCC-CCCEEEEEEECCeeeEEeeeeCCCCCCeece-EEEEEEeCCCccccceEEEEEEECCC
Q 047744 3 GGILEVLLVNAEGIKHTNIFG-TPSYYVIARCGNQEHRSKNSMVKGEKAWWNE-KFIFEFPMSDWKLLTHIKFRIMDTEL 80 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~-~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne-~f~f~v~~~~~~~~~~L~v~v~d~~~ 80 (151)
-|.|-|.|..|++|+..|..+ ..|.||.+++.+..++|.+.. +++||.||- =|.|++...+ +.++.|.+++.|+|.
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~-kslnp~wnsdwfkfevddad-lqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFL-KSLNPQWNSDWFKFEVDDAD-LQDEPLQIRLLDHDT 79 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhh-hhcCCcccccceEEecChhh-hccCCeeEEEecccc
Confidence 378999999999999988765 479999999999999998876 699999995 5899998755 478899999999999
Q ss_pred CCCCcccEEEEEeccccccccceeeeecCcccccC---------CCcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744 81 LTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQ---------SNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF 148 (151)
Q Consensus 81 ~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~ 148 (151)
.+.+|.||.+. |++..+.-+. ....+|+.+... -...+|||.+-++.
T Consensus 80 ysandaigkv~--------------i~idpl~~e~aaqavhgkgtvisgw~pifdt-------ihgirgeinvivkv 135 (1169)
T KOG1031|consen 80 YSANDAIGKVN--------------IDIDPLCLEEAAQAVHGKGTVISGWFPIFDT-------IHGIRGEINVIVKV 135 (1169)
T ss_pred cccccccceee--------------eccChHHHHhHHhhhcCCceEEeeeeeccee-------cccccceeEEEEEE
Confidence 99999999999 7777664221 112456554322 23367999887653
No 115
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.16 E-value=1e-10 Score=95.25 Aligned_cols=124 Identities=14% Similarity=0.171 Sum_probs=90.1
Q ss_pred EEEeeCCCCCCCCCCCCEEEEEEECCee----eEEeeeeCCCCCCeeceEEEEEEeCCC------------ccccceEEE
Q 047744 10 LVNAEGIKHTNIFGTPSYYVIARCGNQE----HRSKNSMVKGEKAWWNEKFIFEFPMSD------------WKLLTHIKF 73 (151)
Q Consensus 10 v~~a~~L~~~~~~~~~dpyv~v~~~~~~----~~T~~~~~~~~nP~wne~f~f~v~~~~------------~~~~~~L~v 73 (151)
+++++++.+.. .+.+|||+++...+.. .+|++.+ ++.+|.|+|.|.|++.... ......|++
T Consensus 137 ~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~k-kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv 214 (800)
T KOG2059|consen 137 VLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKK-KTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRV 214 (800)
T ss_pred hhhhcccCcee-CCCCCcceEEeecccchhhccccceee-eccCcchhhheeeeeccccccccchhcCcccCCceeeEEE
Confidence 34455555544 3459999999876544 3777665 6999999999999876540 001356889
Q ss_pred EEEE-CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEEe
Q 047744 74 RIMD-TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFIV 150 (151)
Q Consensus 74 ~v~d-~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~~ 150 (151)
++|+ ++.+..++|+|++. +++..+....+. .+|+.|+|+.-.-...++.--|.+++.++|+.
T Consensus 215 ~lW~~~~~~~~~~FlGevr--------------v~v~~~~~~s~p-~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 215 DLWNDLNLVINDVFLGEVR--------------VPVDVLRQKSSP-AAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred eeccchhhhhhhhhceeEE--------------eehhhhhhccCc-cceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 9999 56666799999999 999888755554 89999999864433334556699999998863
No 116
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.10 E-value=3.2e-11 Score=98.63 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=74.8
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-------eeEEeeeeCCCCCCeeceEEEEEEeCCCcc-ccceEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-------EHRSKNSMVKGEKAWWNEKFIFEFPMSDWK-LLTHIKFR 74 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-------~~~T~~~~~~~~nP~wne~f~f~v~~~~~~-~~~~L~v~ 74 (151)
..+|.|.|+-|+++.+-|..|-+||||++.+... .++|+++. +++||+|+|.|.|.++..... ....|.|+
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~-rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVS-RTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhh-ccccchhhhheeeecCccccccccceEEEE
Confidence 4577888899999999999999999999998653 46888775 699999999999999875432 24468999
Q ss_pred EEECCCCCCCcccEEEE
Q 047744 75 IMDTELLTDGGFVGETV 91 (151)
Q Consensus 75 v~d~~~~~~d~~iG~~~ 91 (151)
|+|+|-++.+||-|++-
T Consensus 1025 VMDHD~L~sNDFaGEA~ 1041 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAF 1041 (1103)
T ss_pred eeccceecccccchHHH
Confidence 99999999999999999
No 117
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.06 E-value=3.2e-11 Score=98.68 Aligned_cols=120 Identities=18% Similarity=0.277 Sum_probs=91.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEECC-------------ee-----------------eEEeeeeCCCCCCeeceE
Q 047744 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGN-------------QE-----------------HRSKNSMVKGEKAWWNEK 55 (151)
Q Consensus 6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------------~~-----------------~~T~~~~~~~~nP~wne~ 55 (151)
+.|.+..|.+|..++..|.+|||+...+.. ++ -+.+.++.+++||.|+|.
T Consensus 116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~Ek 195 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEK 195 (1103)
T ss_pred HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhh
Confidence 345667889999999999999999875421 00 012334567999999999
Q ss_pred EEEEEeCCCccccceEEEEEEECCCC---------------------------------CC---CcccEEEEEecccccc
Q 047744 56 FIFEFPMSDWKLLTHIKFRIMDTELL---------------------------------TD---GGFVGETVFSYIHDQT 99 (151)
Q Consensus 56 f~f~v~~~~~~~~~~L~v~v~d~~~~---------------------------------~~---d~~iG~~~~~~~~~~~ 99 (151)
|.|++... ....+.+.|||+|.- +. |||+|.+.
T Consensus 196 F~F~IeDv---~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciN-------- 264 (1103)
T KOG1328|consen 196 FQFTIEDV---QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCIN-------- 264 (1103)
T ss_pred eeeehhcc---ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccc--------
Confidence 99998875 456899999998721 22 68888888
Q ss_pred ccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744 100 SVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI 149 (151)
Q Consensus 100 ~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~ 149 (151)
||+.++...+- +.|+.|+|++. ..+..|.+.+.++.+
T Consensus 265 ------ipl~EiP~~Gl--d~WFkLepRS~-----~S~VqG~~~LklwLs 301 (1103)
T KOG1328|consen 265 ------IPLAEIPPDGL--DQWFKLEPRSD-----KSKVQGQVKLKLWLS 301 (1103)
T ss_pred ------cchhcCCcchH--HHHhccCcccc-----cccccceEEEEEEEe
Confidence 99999976664 68999999873 456789999988875
No 118
>PLN02352 phospholipase D epsilon
Probab=98.91 E-value=2.4e-08 Score=83.36 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=83.5
Q ss_pred CCcEEEEEEEEeeCCCCC----CCC-CCCCEEEEEEECCeee-EEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEE
Q 047744 2 KGGILEVLLVNAEGIKHT----NIF-GTPSYYVIARCGNQEH-RSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRI 75 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~----~~~-~~~dpyv~v~~~~~~~-~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v 75 (151)
-+|+|.++|.+|+-+... +.. ...||||.+.+++.+. || .+..||.|+|.|...+... .+..+.|+|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt----~~~~~p~w~e~f~i~~ah~---~~~~~~f~v 80 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT----SHEYDRVWNQTFQILCAHP---LDSTITITL 80 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC----CCCCCCccccceeEEeeee---cCCcEEEEE
Confidence 479999999999843221 111 1239999999987654 55 2456999999999888763 225799999
Q ss_pred EECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCcc-c-eEEEEEEEEEe
Q 047744 76 MDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTY-K-GQIVIGFKFIV 150 (151)
Q Consensus 76 ~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~-G~i~~~~~~~~ 150 (151)
.| .-.+||.+. +|+.++++.....++|+.+... ++++ . .+|.++++|+|
T Consensus 81 k~-----~~~~ig~~~--------------~p~~~~~~g~~~~~~~~~~~~~-------~~~p~~~~~~~~~~~~~~ 131 (758)
T PLN02352 81 KT-----KCSILGRFH--------------IQAHQIVTEASFINGFFPLIME-------NGKPNPELKLRFMLWFRP 131 (758)
T ss_pred ec-----CCeEEEEEE--------------EEHHHhhCCCcccceEEEcccC-------CCCCCCCCEEEEEEEEEE
Confidence 87 247899999 9999998765523778776433 3332 2 49999999986
No 119
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.77 E-value=7e-09 Score=88.79 Aligned_cols=109 Identities=14% Similarity=0.152 Sum_probs=86.3
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-----eeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-----QEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
.|+|.|-|.-|++|.-..-....||||+..+.. .++||++++ ++.||.|||.+.+.-...+.+..+.|.++||.
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvr-kt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVR-KTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhcccc-ccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 588999999999996655566799999998853 357888886 69999999999886333333356889999999
Q ss_pred CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeecc
Q 047744 78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPA 127 (151)
Q Consensus 78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~ 127 (151)
.+.+..+.++|.+. |+|.++.-.... .+|+.|..+
T Consensus 1602 ~~~~~en~~lg~v~--------------i~L~~~~l~kE~-~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVN--------------IPLLKVDLLKES-VGWYNLGAC 1636 (1639)
T ss_pred ccceeeeeeeeeee--------------cchhhcchhhhh-cceeecccc
Confidence 99998999999999 999888654443 578777543
No 120
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=2.6e-09 Score=80.60 Aligned_cols=129 Identities=20% Similarity=0.225 Sum_probs=90.8
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-----eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-----EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-----~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
..++.+++..|.+|++.+..+..|||+.+.+... +.+|++.. ++.||.|+|+..+..-..+......+++.|.|
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~-n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcd 170 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTR-NTLNPEWNETEVYEGITDDDTHLKVLRKVVCD 170 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhc-cCcCcceeccceecccccchhhhhhhheeecc
Confidence 3568899999999999999999999999987532 34555654 68999999987775444333355678899999
Q ss_pred CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCC-ccee--eeeeccccceecCCCccceEEEEEEEE
Q 047744 78 TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSN-DKEL--IEVKPAPYNVLLEDDTYKGQIVIGFKF 148 (151)
Q Consensus 78 ~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~--~~l~~~~~~~~~~~~~~~G~i~~~~~~ 148 (151)
.+.+.+++++|+.. +++..+...+.. +.-| ..+++.... +.+.+.+|+|.+++.|
T Consensus 171 n~~~~~~~sqGq~r--------------~~lkKl~p~q~k~f~~cl~~~lp~~rad--~~~~E~rg~i~isl~~ 228 (362)
T KOG1013|consen 171 NDKKTHNESQGQSR--------------VSLKKLKPLQRKSFNICLEKSLPSERAD--RDEDEERGAILISLAY 228 (362)
T ss_pred CcccccccCcccch--------------hhhhccChhhcchhhhhhhccCCccccc--ccchhhccceeeeecc
Confidence 99999999999999 666666543322 1121 122212211 2234678899888876
No 121
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.62 E-value=2.2e-08 Score=84.51 Aligned_cols=87 Identities=17% Similarity=0.251 Sum_probs=72.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeee--EEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEH--RSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT 82 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~--~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~ 82 (151)
.++|++++|.+|.+.|..|.+|||+.+.++.+.. +..-+ .+++||+|.+.|.++...+ ....+.++|||+|.++
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yi-p~tlnPVfgkmfel~~~lp---~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYI-PNTLNPVFGKMFELECLLP---FEKDLIVEVYDHDLEA 689 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcC-cCCCCcHHHHHHHhhcccc---hhhcceeEEEEeeccc
Confidence 4679999999999999999999999999887653 33333 4699999999988766554 4578999999999999
Q ss_pred CCcccEEEEEecc
Q 047744 83 DGGFVGETVFSYI 95 (151)
Q Consensus 83 ~d~~iG~~~~~~~ 95 (151)
+|+.||+..+++.
T Consensus 690 ~d~~iget~iDLE 702 (1105)
T KOG1326|consen 690 QDEKIGETTIDLE 702 (1105)
T ss_pred ccchhhceehhhh
Confidence 9999999994444
No 122
>PLN02964 phosphatidylserine decarboxylase
Probab=98.37 E-value=8.1e-07 Score=73.67 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=64.3
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEE-EEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYY-VIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL 81 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpy-v~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~ 81 (151)
.|...+++++|+ .+ ..|+| +.+.++.+..||...+ ++.||+||+...|.+...+ .....|.|||.+.+
T Consensus 53 ~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~-~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 121 (644)
T PLN02964 53 SGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSD-STDKPVWNSEKKLLLEKNG---PHLARISVFETNRL 121 (644)
T ss_pred cCeEEEEeehhh----hc---cCCcEEEEEEecceeeeecccc-ccCCcccchhhceEeccCC---cceEEEEEEecCCC
Confidence 477888998886 22 25886 5678889999998875 6999999999999887754 34569999999999
Q ss_pred CCCcccEEEE
Q 047744 82 TDGGFVGETV 91 (151)
Q Consensus 82 ~~d~~iG~~~ 91 (151)
+.++.+|.++
T Consensus 122 s~n~lv~~~e 131 (644)
T PLN02964 122 SKNTLVGYCE 131 (644)
T ss_pred CHHHhhhhee
Confidence 9999999999
No 123
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=8.5e-07 Score=67.26 Aligned_cols=86 Identities=14% Similarity=0.263 Sum_probs=71.4
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-----eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-----EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT 78 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-----~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~ 78 (151)
..|.|+++.+..|...|..+-+||||..++... +++|.+. +++.+|.||+.|.|.+...+. ....+.++|||.
T Consensus 233 ~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~-K~t~~p~fd~~~~~~i~pgdL-a~~kv~lsvgd~ 310 (362)
T KOG1013|consen 233 PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQK-KKTLNPEFDEEFFYDIGPGDL-AYKKVALSVGDY 310 (362)
T ss_pred CceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcch-hccCCccccccccccCCccch-hcceEEEeeccc
Confidence 467899999999999999999999999987531 3455444 479999999999999988763 677899999999
Q ss_pred CCCCCCcccEEEE
Q 047744 79 ELLTDGGFVGETV 91 (151)
Q Consensus 79 ~~~~~d~~iG~~~ 91 (151)
+..+..+++|-..
T Consensus 311 ~~G~s~d~~GG~~ 323 (362)
T KOG1013|consen 311 DIGKSNDSIGGSM 323 (362)
T ss_pred CCCcCccCCCccc
Confidence 9877889998777
No 124
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.19 E-value=3.4e-06 Score=56.14 Aligned_cols=103 Identities=14% Similarity=0.158 Sum_probs=70.9
Q ss_pred EEEEEEEeeCCCCCC---------C----CCCCCEEEEEEEC----CeeeEEeeeeCCCCCCeeceEEEEEEeC------
Q 047744 6 LEVLLVNAEGIKHTN---------I----FGTPSYYVIARCG----NQEHRSKNSMVKGEKAWWNEKFIFEFPM------ 62 (151)
Q Consensus 6 L~V~v~~a~~L~~~~---------~----~~~~dpyv~v~~~----~~~~~T~~~~~~~~nP~wne~f~f~v~~------ 62 (151)
|.|.|++|.||+..- . .-..++|+.+.+. +..++|+++. ++.-|.|+..+.|..+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVA-rSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVA-RSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchh-hhcCCCccceEEEecccEEEcCC
Confidence 467888888886321 1 0137899998853 3456777775 68999999999886541
Q ss_pred ------CCccccceEEEEEEECCCCC----------CCcccEEEEEeccccccccceeeeecCcccccCCCcceeee
Q 047744 63 ------SDWKLLTHIKFRIMDTELLT----------DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIE 123 (151)
Q Consensus 63 ------~~~~~~~~L~v~v~d~~~~~----------~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~ 123 (151)
-+.+....+.|+||+...-+ +|=.||.+. ||+.+++...+...||+.
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~--------------IPl~~Ll~~rsGitGW~p 142 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVK--------------IPLRDLLTKRSGITGWYP 142 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEE--------------eeHHHHhhcccCcccccc
Confidence 01223567889999976422 244789999 999999876655578864
No 125
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.03 E-value=4.7e-06 Score=51.87 Aligned_cols=80 Identities=14% Similarity=0.284 Sum_probs=54.8
Q ss_pred EEEEEeeCCCCCCCCC-CCCEEEE--EEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCC
Q 047744 8 VLLVNAEGIKHTNIFG-TPSYYVI--ARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTD 83 (151)
Q Consensus 8 V~v~~a~~L~~~~~~~-~~dpyv~--v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~ 83 (151)
++++.++||.-...-| ...-|++ +++.... .|| .++.+..||+|.|+|.|.+..-+ +.+..|.|+|+. ...+
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~Ks-S~rrgs~d~~f~ETFVFqi~l~q-L~~V~L~fsv~~--~~~R 78 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKS-SAKEGSNDIEFMETFVFAIKLQN-LQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccc-hhhcCCCChhHHHHHHHHHHHhh-ccceEEEEEeec--cCCc
Confidence 7889999995444333 2333654 3343333 344 44557899999999999776543 256789999998 3567
Q ss_pred CcccEEEE
Q 047744 84 GGFVGETV 91 (151)
Q Consensus 84 d~~iG~~~ 91 (151)
.+.||.+.
T Consensus 79 Ke~iG~~s 86 (103)
T cd08684 79 KRTIGECS 86 (103)
T ss_pred cceeeEEE
Confidence 78999999
No 126
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.99 E-value=2e-05 Score=63.60 Aligned_cols=84 Identities=12% Similarity=0.074 Sum_probs=61.9
Q ss_pred EEeeCCCCCCCCCCCCEEEEEEEC--C----eeeEEeeeeCCCCCCeeceEEEE--EEeCCCccccceEEEEEEECCCCC
Q 047744 11 VNAEGIKHTNIFGTPSYYVIARCG--N----QEHRSKNSMVKGEKAWWNEKFIF--EFPMSDWKLLTHIKFRIMDTELLT 82 (151)
Q Consensus 11 ~~a~~L~~~~~~~~~dpyv~v~~~--~----~~~~T~~~~~~~~nP~wne~f~f--~v~~~~~~~~~~L~v~v~d~~~~~ 82 (151)
..|+.|.+++.++++|||..+.-. . ..++|.+.+ ++++|.|.+...- .+...+ .+..+.+.+||++.-+
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~-n~l~p~w~~~~i~~~~l~~~~--~~~~~~i~~~d~~~~~ 219 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVK-NTLNPQWAPFSISLQSLCSKD--GNRPIQIECYDYDSNG 219 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceec-cCCCCcccccccchhhhcccC--CCCceEEEEeccCCCC
Confidence 457889999999999999877432 1 235777776 6999999974322 222222 4678999999999989
Q ss_pred CCcccEEEEEecccc
Q 047744 83 DGGFVGETVFSYIHD 97 (151)
Q Consensus 83 ~d~~iG~~~~~~~~~ 97 (151)
++++||++..++...
T Consensus 220 ~~~~ig~~~tt~~~~ 234 (529)
T KOG1327|consen 220 KHDLIGKFQTTLSEL 234 (529)
T ss_pred CcCceeEecccHHHh
Confidence 999999999444443
No 127
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.89 E-value=2.3e-06 Score=72.74 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=70.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEE---EeCCC--c-cccceEEEEEEECC
Q 047744 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFE---FPMSD--W-KLLTHIKFRIMDTE 79 (151)
Q Consensus 6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~---v~~~~--~-~~~~~L~v~v~d~~ 79 (151)
+++.+.+|+.|...+..+.+|||+.+.+.++.+.|.++. +++||.|+++..|. +.... . .....+.|++||.+
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~-~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d 286 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVP-GTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD 286 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeec-CcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence 456677889998888888899999999999999998886 69999999999882 22211 0 01245779999999
Q ss_pred CCCCCcccEEEEEecc
Q 047744 80 LLTDGGFVGETVFSYI 95 (151)
Q Consensus 80 ~~~~d~~iG~~~~~~~ 95 (151)
..+.++|+|.......
T Consensus 287 r~g~~ef~gr~~~~p~ 302 (1105)
T KOG1326|consen 287 RSGINEFKGRKKQRPY 302 (1105)
T ss_pred hhchHHhhcccccceE
Confidence 9999999999874444
No 128
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.86 E-value=3.1e-05 Score=65.57 Aligned_cols=78 Identities=17% Similarity=0.385 Sum_probs=61.3
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECC-------eeeEEeeeeCCCCCCeece-EEEE-EEeCCCccccceEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGN-------QEHRSKNSMVKGEKAWWNE-KFIF-EFPMSDWKLLTHIKF 73 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~-------~~~~T~~~~~~~~nP~wne-~f~f-~v~~~~~~~~~~L~v 73 (151)
.+++.|+|++++-|.+++ ...||.+.+-+ ..++|+++..++.||+|+| .|.| .|-.++ -..|+|
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpe---LA~lRi 774 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPE---LASLRI 774 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccc---hhheee
Confidence 368999999999998766 45899998743 3467888888899999997 6888 444433 468999
Q ss_pred EEEECCCCCCCcccEEEE
Q 047744 74 RIMDTELLTDGGFVGETV 91 (151)
Q Consensus 74 ~v~d~~~~~~d~~iG~~~ 91 (151)
.||+.. ..+||+=.
T Consensus 775 avyeEg----gK~ig~RI 788 (1189)
T KOG1265|consen 775 AVYEEG----GKFIGQRI 788 (1189)
T ss_pred eeeccC----Cceeeeec
Confidence 999976 36999999
No 129
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00014 Score=60.17 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=62.6
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCe-------eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQ-------EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM 76 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-------~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~ 76 (151)
..+.|.|+.|.+|+-. ..|.--|||.+.+-+. ++.|+ .+.++-.|.+||+|.|-+......+...|.|.|-
T Consensus 1125 hkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TK-tKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTK-TKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred ceEEEEEEecccccch-hccccccceEEEEecCcccchhhhcccc-ccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 3577888999999753 3456789999977431 12232 3345677999999999776654335567888998
Q ss_pred ECCCCCCCcccEEEEEecc
Q 047744 77 DTELLTDGGFVGETVFSYI 95 (151)
Q Consensus 77 d~~~~~~d~~iG~~~~~~~ 95 (151)
|+--...|..+|.+.+.+.
T Consensus 1203 DYCFAReDRvvGl~VlqL~ 1221 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLR 1221 (1283)
T ss_pred hheeecccceeeeeeeehh
Confidence 8764456789999993333
No 130
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=2.3e-05 Score=60.53 Aligned_cols=107 Identities=15% Similarity=0.140 Sum_probs=78.7
Q ss_pred CcEEEEEEEEeeCCCCCCCC-CCCCEEEEEEECCe-----eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIF-GTPSYYVIARCGNQ-----EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM 76 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~~-----~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~ 76 (151)
.|.|.|.|++|++|..+... ..++|||+|++.+. +.+|+..+ ++.+|.+-+...|.-.. ....|.+.||
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~-kT~~plyqq~l~f~~sp----~~k~Lq~tv~ 342 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSAR-KTLDPLYQQQLSFDQSP----PGKYLQGTVW 342 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceeccccccccc-ccCchhhhhhhhhccCC----CccEEEEEEe
Confidence 57899999999999655432 25899999987542 35666665 58888888888887776 4578999999
Q ss_pred E-CCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccc
Q 047744 77 D-TELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAP 128 (151)
Q Consensus 77 d-~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~ 128 (151)
. .....++.|||.++ +-++++--......+|+.+-+..
T Consensus 343 gdygRmd~k~fmg~aq--------------i~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 343 GDYGRMDHKSFMGVAQ--------------IMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred ccccccchHHHhhHHH--------------HHhhhhccccccceeeeeccCCc
Confidence 4 55666788999999 88888754332226787776543
No 131
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.57 E-value=9.7e-05 Score=57.95 Aligned_cols=120 Identities=13% Similarity=0.055 Sum_probs=78.6
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-----CeeeEEeeeeCCCCCCeeceEEEEEEeCCCcc--------ccce
Q 047744 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARCG-----NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWK--------LLTH 70 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~--------~~~~ 70 (151)
..|++.|+++.+++...-....|-|+++.+. .++.+|.+++ .+.+|.|+|.|..++...... ....
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik-~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIK-VTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceee-CCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 4456677777777554322236778887652 3556787876 589999999998877652210 1346
Q ss_pred EEEEEEECCCCC-CCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCc--cceEEEEEEE
Q 047744 71 IKFRIMDTELLT-DGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDT--YKGQIVIGFK 147 (151)
Q Consensus 71 L~v~v~d~~~~~-~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~G~i~~~~~ 147 (151)
++|+||+...|- +|.++|.+. +.+.-+...... ++++.| .+|+ .-|.+.+.++
T Consensus 446 ~kfeifhkggf~rSdkl~gt~n--------------ikle~Len~cei-~e~~~l---------~DGRK~vGGkLevKvR 501 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGN--------------IKLEILENMCEI-CEYLPL---------KDGRKAVGGKLEVKVR 501 (523)
T ss_pred eeEEEeeccccccccceeceee--------------eeehhhhcccch-hhceec---------cccccccCCeeEEEEE
Confidence 899999998764 688999999 888777543333 333333 2454 3377776665
Q ss_pred E
Q 047744 148 F 148 (151)
Q Consensus 148 ~ 148 (151)
.
T Consensus 502 i 502 (523)
T KOG3837|consen 502 I 502 (523)
T ss_pred E
Confidence 3
No 132
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.47 E-value=0.0024 Score=44.43 Aligned_cols=90 Identities=11% Similarity=0.136 Sum_probs=61.6
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCEEEEEEE--CCeee----EEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARC--GNQEH----RSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~~~----~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
..++|++++|.++...+ ..|-||.+.+ +++.. .|+.+ ...++.|||-+.|.+...+...+..|.|+||+
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v--~~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRV--PCSNPRWNEWLDYDIYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEeccc--CCCCCccceeEEcccchhcCChhheEEEEEEE
Confidence 46899999999887543 3678888754 34322 23222 24689999999998776655467899999999
Q ss_pred CCCCC----CCcccEEEEEeccccc
Q 047744 78 TELLT----DGGFVGETVFSYIHDQ 98 (151)
Q Consensus 78 ~~~~~----~d~~iG~~~~~~~~~~ 98 (151)
...-. ....+|.+.++++...
T Consensus 83 ~~~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 83 VKGRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred EecccCCCCceEEEEEEEEEEECCC
Confidence 75321 1246999996666544
No 133
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.41 E-value=0.0031 Score=44.52 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=62.0
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCEEEEEEE--CCee----eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARC--GNQE----HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
..++|+++.+.++... ....+-||.+.+ +++. ..|+... .+.++.|||.+.|++...+......|.|+||+
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~ 84 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDLPRMARLCFAIYE 84 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccC-CCCccccceeEEcccchhcCChhHeEEEEEEE
Confidence 4689999999999752 223566777643 4433 2333222 24679999999997766655467899999998
Q ss_pred CCCCC----------------CCcccEEEEEecccccc
Q 047744 78 TELLT----------------DGGFVGETVFSYIHDQT 99 (151)
Q Consensus 78 ~~~~~----------------~d~~iG~~~~~~~~~~~ 99 (151)
..... .+..||.+.+.++....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~ 122 (173)
T cd08693 85 VSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG 122 (173)
T ss_pred ecccccccccccccccccccCcceEEEEEeEEEEcccc
Confidence 65321 13579999966665443
No 134
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.29 E-value=0.0054 Score=42.43 Aligned_cols=130 Identities=16% Similarity=0.198 Sum_probs=81.7
Q ss_pred cEEEEEEEEeeCCCCCCCC--CCCCE--EEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCc----------cccc
Q 047744 4 GILEVLLVNAEGIKHTNIF--GTPSY--YVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDW----------KLLT 69 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~--~~~dp--yv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~----------~~~~ 69 (151)
.-|++.|..++-....-.. +..+. .+-+.+.+|.++|+.+. .+.+|.|+|.|.|+++.... ...+
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp-~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~ 87 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVP-CACEPDFNEEFLFELPRDSFGAGSTATTLLSISD 87 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcc-cccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence 4577777776543221110 23333 34456688999998885 68999999999998876420 0134
Q ss_pred eEEEEEEECCCCCCCcccEEEEEeccccccccceeeeecCcccccCCCcceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744 70 HIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQSNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI 149 (151)
Q Consensus 70 ~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~ 149 (151)
.+.+.|...+..+...++|... ++...+...+.. .-...++..- +..+..-..|-|.+.+...
T Consensus 88 pihivli~~d~~~~~~Lv~s~~--------------ldWR~vL~s~~~-~~~~~vEL~G--~~~e~kv~~GiL~l~lELl 150 (156)
T PF15627_consen 88 PIHIVLIRTDPSGETTLVGSHF--------------LDWRKVLCSGNG-STSFTVELCG--VGPESKVPVGILDLRLELL 150 (156)
T ss_pred ceEEEEEEecCCCceEeeeece--------------ehHHHHhccCCC-ccceeEEEec--cCCCCccceeEEEEEEEee
Confidence 6778887777777678999999 777777765542 1111111110 0011223779999999998
Q ss_pred eC
Q 047744 150 VN 151 (151)
Q Consensus 150 ~~ 151 (151)
|+
T Consensus 151 P~ 152 (156)
T PF15627_consen 151 PN 152 (156)
T ss_pred cC
Confidence 85
No 135
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=97.21 E-value=0.0032 Score=44.26 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=63.9
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEE--CCeee----EEeee---eCCCCCCeeceEEEEEEeCCCccccceEEE
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARC--GNQEH----RSKNS---MVKGEKAWWNEKFIFEFPMSDWKLLTHIKF 73 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~~~----~T~~~---~~~~~nP~wne~f~f~v~~~~~~~~~~L~v 73 (151)
...+.|+|.++.+++........|-|+.+.+ +++.. .|+.. +.-...+.|||-+.|.+...+...+..|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 3568899999999987654445778887754 44332 22211 111235779999999776655446789999
Q ss_pred EEEECCCCC---------CCcccEEEEEeccccc
Q 047744 74 RIMDTELLT---------DGGFVGETVFSYIHDQ 98 (151)
Q Consensus 74 ~v~d~~~~~---------~d~~iG~~~~~~~~~~ 98 (151)
++|+....+ .+..||.+.+.++...
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~ 120 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR 120 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcch
Confidence 999876443 3468999996666543
No 136
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.13 E-value=0.008 Score=41.50 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=60.1
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCEEEEEEE--CCee----eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEE
Q 047744 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARC--GNQE----HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMD 77 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d 77 (151)
..++|.+....++...+ ....+-||.+.+ +++. ..|... ..+.++.|||.+.|.+...+...+..|.|+||+
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~-~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~ 85 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKV-PFSTSVTWNEWLTFDILISDLPREARLCLSIYA 85 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCC-cCCCCCcccceeEccchhhcCChhheEEEEEEE
Confidence 45778888887776521 223566777654 3332 122222 123689999999997665554467899999999
Q ss_pred CCCCC--CCcccEEEEEeccccc
Q 047744 78 TELLT--DGGFVGETVFSYIHDQ 98 (151)
Q Consensus 78 ~~~~~--~d~~iG~~~~~~~~~~ 98 (151)
....+ .+..||.+.+.++...
T Consensus 86 ~~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 86 VSEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred EecCCCCcceEEEEEeEEeEccc
Confidence 76543 4578999996666544
No 137
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=97.13 E-value=0.033 Score=39.49 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=57.0
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCEEEEEEE--CCee---eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEEC
Q 047744 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARC--GNQE---HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDT 78 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~~---~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~ 78 (151)
..++|+|..+. .+..+......-||.+.+ +++. .+|+.. .-+.++.|||-+.|.+...+......|.|+||+.
T Consensus 10 ~~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~-~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 10 RKFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPK-PFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred CCEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeecc-CCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 35788888876 333332223445666543 3322 234333 2356799999999987766655678999999986
Q ss_pred CCCC----------------CCcccEEEEEeccccc
Q 047744 79 ELLT----------------DGGFVGETVFSYIHDQ 98 (151)
Q Consensus 79 ~~~~----------------~d~~iG~~~~~~~~~~ 98 (151)
..-. .+-.||.+.++++.-.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~ 123 (178)
T cd08399 88 KAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDHR 123 (178)
T ss_pred ecCcccccccccccccccccccceEEEEEEEEEcCC
Confidence 3211 1446788887776544
No 138
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=97.13 E-value=0.038 Score=37.32 Aligned_cols=119 Identities=14% Similarity=0.226 Sum_probs=71.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCee---eEEeeeeCCCCCCeeceEEEEEEeCC-----CccccceEEEEEE
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQE---HRSKNSMVKGEKAWWNEKFIFEFPMS-----DWKLLTHIKFRIM 76 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~~~nP~wne~f~f~v~~~-----~~~~~~~L~v~v~ 76 (151)
.+.|.+++..+++.. ....|+..+.+... ..|......+..-.|+|.|.+.+... .......+.|.|+
T Consensus 8 ~~~l~i~~l~~~p~~----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~ 83 (143)
T PF10358_consen 8 QFDLTIHELENLPSS----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF 83 (143)
T ss_pred EEEEEEEEeECcCCC----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence 466888888888762 23446666555443 34444444456688999998843221 1124567889998
Q ss_pred ECCCCCCCcccEEEEEeccccccccceeeeecCcccccC-CCcceeeeeeccccceecCCCccceEEEEEEEEE
Q 047744 77 DTELLTDGGFVGETVFSYIHDQTSVNQCRYYLGGIITDQ-SNDKELIEVKPAPYNVLLEDDTYKGQIVIGFKFI 149 (151)
Q Consensus 77 d~~~~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~~ 149 (151)
....-++...+|.+. ++|+++.... ......+.|.. .......|.+++.+.
T Consensus 84 ~~~~~~~k~~lG~~~--------------inLaey~~~~~~~~~~~~~l~~--------~~~~~a~L~isi~~~ 135 (143)
T PF10358_consen 84 EVDGSGKKKVLGKVS--------------INLAEYANEDEEPITVRLLLKK--------CKKSNATLSISISLS 135 (143)
T ss_pred EecCCCccceEEEEE--------------EEHHHhhCcCCCcEEEEEeCcc--------CCCCCcEEEEEEEEE
Confidence 875333336899999 9999998643 21012222211 124556777777664
No 139
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=97.02 E-value=0.015 Score=36.59 Aligned_cols=60 Identities=8% Similarity=0.168 Sum_probs=44.6
Q ss_pred CCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEE
Q 047744 23 GTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETV 91 (151)
Q Consensus 23 ~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~ 91 (151)
|..+-.+++++++.....+.-+ ...+..|++.|.+++.. .+.|.|+||-+|- ..+.|-.-
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~LdR-----sRELEI~VywrD~---RslCav~~ 66 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELER-----SRELEIAVYWRDW---RSLCAVKF 66 (98)
T ss_pred cccceEEEEEEcCeEEeecccc-ccccccccceeEEEeec-----ccEEEEEEEEecc---hhhhhhee
Confidence 3467888999988765544454 35789999999998875 5789999998763 34667666
No 140
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.77 E-value=0.021 Score=39.72 Aligned_cols=74 Identities=15% Similarity=0.203 Sum_probs=51.8
Q ss_pred CCCEEEEEEE--CCeee----EEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEEEecccc
Q 047744 24 TPSYYVIARC--GNQEH----RSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHD 97 (151)
Q Consensus 24 ~~dpyv~v~~--~~~~~----~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~ 97 (151)
.++-||.+.+ +++.. .|+.. .-+..+.|||-..|.+...+...+..|.|+||+....+....+|.+.++++..
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~-~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYK-PFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEcccc-CCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 4778888755 33322 33222 22566889999999877766546789999999987655667899999777754
Q ss_pred c
Q 047744 98 Q 98 (151)
Q Consensus 98 ~ 98 (151)
.
T Consensus 108 ~ 108 (159)
T cd08397 108 D 108 (159)
T ss_pred C
Confidence 3
No 141
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.53 E-value=0.011 Score=48.26 Aligned_cols=62 Identities=16% Similarity=0.401 Sum_probs=46.3
Q ss_pred eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCC----CCCCcccEEEEEeccccccccceeeeecCcccc
Q 047744 38 HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTEL----LTDGGFVGETVFSYIHDQTSVNQCRYYLGGIIT 113 (151)
Q Consensus 38 ~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~----~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~ 113 (151)
.+|.++. +.+||.|-+.|..+.... ..+.|+++++|.+. +...+|+|++. ..++.+.+
T Consensus 43 ~rte~i~-~~~~p~f~~~~~l~y~fE---~vQ~l~~~~~~~~~~~~~l~~~dflg~~~--------------c~l~~ivs 104 (529)
T KOG1327|consen 43 GRTEVIR-NVLNPFFTKKFLLQYRFE---KVQLLRFEVYDIDSRTPDLSSADFLGTAE--------------CTLSQIVS 104 (529)
T ss_pred cceeeee-ccCCccceeeechhheee---eeeeEEEEEeecCCccCCcchhcccceee--------------eehhhhhh
Confidence 3677776 589999999987766553 35789999998764 35678999999 77777765
Q ss_pred cCCC
Q 047744 114 DQSN 117 (151)
Q Consensus 114 ~~~~ 117 (151)
....
T Consensus 105 ~~~~ 108 (529)
T KOG1327|consen 105 SSGL 108 (529)
T ss_pred hhhh
Confidence 4443
No 142
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.44 E-value=0.1 Score=40.74 Aligned_cols=122 Identities=13% Similarity=0.172 Sum_probs=82.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCc----cccceEEEEEEECC-C
Q 047744 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDW----KLLTHIKFRIMDTE-L 80 (151)
Q Consensus 6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~----~~~~~L~v~v~d~~-~ 80 (151)
+.|.|++|++.+... ...-++..++++....|-.+. .+..|.||-.+.+++..... ..+..|++++|..+ .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~-~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVP-HTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCC-CCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 568899999987652 234567788888888887553 58899999999997643210 13568999999887 4
Q ss_pred CCCCcccEEEEEeccccccccceeeeecCcc-cccCCCcceeeeeeccccceecCC---CccceEEEEEEEEE
Q 047744 81 LTDGGFVGETVFSYIHDQTSVNQCRYYLGGI-ITDQSNDKELIEVKPAPYNVLLED---DTYKGQIVIGFKFI 149 (151)
Q Consensus 81 ~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~---~~~~G~i~~~~~~~ 149 (151)
-+..+.||.+. ++|... +.... .....+.||+++-.+ .+.+-||.+++...
T Consensus 78 ~~~re~iGyv~--------------LdLRsa~~~~~~----~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie 132 (340)
T PF12416_consen 78 TGKRESIGYVV--------------LDLRSAVVPQEK----NQKQKPKWYKLLSSSSKYKKHKPELLLSLSIE 132 (340)
T ss_pred CCcceeccEEE--------------EEcccccccccc----ccccCCCeeEccccccccccCCccEEEEEEEe
Confidence 45678999999 887776 11111 111356777766332 22457888887653
No 143
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.28 E-value=0.072 Score=36.15 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=42.7
Q ss_pred CCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCC----cccEEEEEeccccccccceee
Q 047744 48 EKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDG----GFVGETVFSYIHDQTSVNQCR 105 (151)
Q Consensus 48 ~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d----~~iG~~~~~~~~~~~~~~~~~ 105 (151)
.++.|||.+.|.+...+...+..|.|+||+.+..... ..||.+.+.++....-+.++.
T Consensus 32 ~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~L~~G~ 93 (142)
T PF00792_consen 32 SRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQLRQGP 93 (142)
T ss_dssp SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSBBEEEE
T ss_pred ccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCcccCCC
Confidence 6999999999988776654678899999997765544 689999977776554444443
No 144
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=96.08 E-value=0.019 Score=44.05 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=56.0
Q ss_pred CcEEEEEEEEeeCCCCCCC--CCCCCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECC
Q 047744 3 GGILEVLLVNAEGIKHTNI--FGTPSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTE 79 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~--~~~~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~ 79 (151)
.|.|-+.+..+++|+-... .-+.+-|+++..+.+- .+| .++..+.--.|.|.|..++.. ...+.+-||.|+
T Consensus 50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt-~vrs~~~~f~w~e~F~~Dvv~-----~~vl~~lvySW~ 123 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPART-RVRSSGPGFAWAEDFKHDVVN-----IEVLHYLVYSWP 123 (442)
T ss_pred cceEEEEEecccccccChhccCceeeeeeeeeecccCcccc-ccccCCCCccchhhceeeccc-----ceeeeEEEeecC
Confidence 5889999999999965543 3357889999887663 344 343344556789999887764 357888888888
Q ss_pred CCCCCccc
Q 047744 80 LLTDGGFV 87 (151)
Q Consensus 80 ~~~~d~~i 87 (151)
.-.++++.
T Consensus 124 pq~RHKLC 131 (442)
T KOG1452|consen 124 PQRRHKLC 131 (442)
T ss_pred chhhcccc
Confidence 65566653
No 145
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=95.63 E-value=0.22 Score=31.76 Aligned_cols=73 Identities=18% Similarity=0.176 Sum_probs=45.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEE--CCeee----EEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECC
Q 047744 6 LEVLLVNAEGIKHTNIFGTPSYYVIARC--GNQEH----RSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTE 79 (151)
Q Consensus 6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~--~~~~~----~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~ 79 (151)
+.+.+..+.+..........+-||.+.+ +++.. .|+. +.-+..+.|||-..|.+...+...+..|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~-~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSY-KPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecc-cCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4556666666654432222477888754 33322 2322 222455899999999776665446789999999864
No 146
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=94.05 E-value=0.31 Score=34.56 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=32.5
Q ss_pred EEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC-CC--cccEEEEEeccc
Q 047744 39 RSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT-DG--GFVGETVFSYIH 96 (151)
Q Consensus 39 ~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~-~d--~~iG~~~~~~~~ 96 (151)
.|.+. ..+.+|.|+|+|.++++... ....+|.|++++...-. ++ ..+|.+.+.+..
T Consensus 62 ~S~v~-yh~k~P~f~deiKi~LP~~l-~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 62 YSSVY-YHNKNPQFNDEIKIQLPPDL-FPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp E-----TT-SS-EEEEEEEEEE-CCC-CTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEE-ecCCCCCccEEEEEEcCchh-cccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 34343 34689999999999998753 25678999999965322 12 689999944444
No 147
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=93.79 E-value=0.33 Score=34.74 Aligned_cols=57 Identities=16% Similarity=0.312 Sum_probs=39.7
Q ss_pred eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC-C-CcccEEEEEeccc
Q 047744 38 HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT-D-GGFVGETVFSYIH 96 (151)
Q Consensus 38 ~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~-~-d~~iG~~~~~~~~ 96 (151)
.+|.+.. .+.+|.|+|++.+.++.... ...+|.|++++...-. . ...+|-+.+.++.
T Consensus 55 ~~S~V~y-H~~~P~W~EtiKi~lP~~~~-~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 55 YRSFVLY-HNNSPRWNETIKLPIPIDKF-RGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred EEEEEEE-cCCCCCCceeEEEecChhhC-CCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 4665554 57899999999998887542 5678999988754321 1 2568888855554
No 148
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=93.54 E-value=0.47 Score=33.47 Aligned_cols=56 Identities=9% Similarity=0.154 Sum_probs=39.6
Q ss_pred EEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC-----CCCcccEEEEEeccc
Q 047744 39 RSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL-----TDGGFVGETVFSYIH 96 (151)
Q Consensus 39 ~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~-----~~d~~iG~~~~~~~~ 96 (151)
.++++.. ..+|.|+|++...++..- ....+|.|++++...- .....+|-+.+.+..
T Consensus 55 ~~sv~~~-~k~p~f~deiKi~LP~~l-~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYY-HKNPVFNDEIKIQLPADL-TPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEc-CCCCCCceeEEEecCCcc-CCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 4445554 389999999999886642 2567899999986522 235679999955554
No 149
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=93.23 E-value=0.54 Score=33.85 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=40.3
Q ss_pred eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC----CCCcccEEEEEeccc
Q 047744 37 EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL----TDGGFVGETVFSYIH 96 (151)
Q Consensus 37 ~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~----~~d~~iG~~~~~~~~ 96 (151)
..+|.+.. ...+|.|+|++...++.... ...+|.|++++...- .....+|-+.+.+++
T Consensus 54 e~~S~V~Y-h~~~P~W~EtIKl~lP~~~~-~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~ 115 (196)
T cd08694 54 EYKSVIYY-QVDKPKWFETFKVAIPIEDF-KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQ 115 (196)
T ss_pred eEEEEEEe-ecCCCCCceeEEEecChhhC-CCeEEEEEEEeeccccccCCCCCceEEEEEeeec
Confidence 35665544 47899999999998887542 577999999885421 112468888866663
No 150
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=92.76 E-value=0.77 Score=29.78 Aligned_cols=97 Identities=6% Similarity=0.038 Sum_probs=47.8
Q ss_pred EEEEEE-CCeeeEEeeeeCCCCCCeeceEEEEEEeCCCc----cccceEEEEEEECCCCCCCcccEEEEEeccccccccc
Q 047744 28 YVIARC-GNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDW----KLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVN 102 (151)
Q Consensus 28 yv~v~~-~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~----~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~ 102 (151)
||.+.+ +-+.+.|.++. +.+|.+|-+-.|.|...+. +....+.++++..- ....+.+|.++
T Consensus 2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~----------- 67 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQ----------- 67 (107)
T ss_dssp EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEE-----------
T ss_pred EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEE-----------
Confidence 344433 23456676665 7999999998888876431 12568899998865 23356899999
Q ss_pred eeeeecCcccccCC-CcceeeeeeccccceecCCCccceEEEEEEEE
Q 047744 103 QCRYYLGGIITDQS-NDKELIEVKPAPYNVLLEDDTYKGQIVIGFKF 148 (151)
Q Consensus 103 ~~~i~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~~~ 148 (151)
+++..++.... ...+...+ ...++..-|.|.+.++.
T Consensus 68 ---i~l~~ll~~~~~~i~~~~~l-------~g~~~~~~g~l~y~~rl 104 (107)
T PF11618_consen 68 ---ISLRPLLESNGERIHGSATL-------VGVSGEDFGTLEYWIRL 104 (107)
T ss_dssp ---E--SHHHH--S--EEEEEEE--------BSSS-TSEEEEEEEEE
T ss_pred ---eechhhhcCCCceEEEEEEE-------eccCCCeEEEEEEEEEe
Confidence 99999884333 21222222 23456678999888765
No 151
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=90.82 E-value=3.3 Score=28.95 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=44.8
Q ss_pred CCCEEEEEEECCeeeEEeeeeC--CCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEE
Q 047744 24 TPSYYVIARCGNQEHRSKNSMV--KGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETV 91 (151)
Q Consensus 24 ~~dpyv~v~~~~~~~~T~~~~~--~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~ 91 (151)
+..-|+++.+.++...++..+. ....=.++|.|.+.+.. -.+.|.++||.... ..+..|+++.
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~----~Pesi~l~i~E~~~-~~~~~la~v~ 100 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR----WPESIKLEIYEKSG-LSDRLLAEVF 100 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec----CCCEEEEEEEEccC-ccceEEEEEE
Confidence 3567899989887654433331 12234467888887766 34789999999886 6778999999
No 152
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=89.57 E-value=2.5 Score=30.04 Aligned_cols=58 Identities=9% Similarity=0.106 Sum_probs=39.7
Q ss_pred eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCC------CCcccEEEEEecccc
Q 047744 38 HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLT------DGGFVGETVFSYIHD 97 (151)
Q Consensus 38 ~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~------~d~~iG~~~~~~~~~ 97 (151)
..|.+.. .+.+|.|+|++...++..- -...+|.|+.++..--. ....+|-+.+.+.+.
T Consensus 56 ~~S~V~y-Hnk~P~f~DEiKi~LP~~l-~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~~ 119 (179)
T cd08696 56 AYTAVTY-HNKSPDFYDEIKIKLPADL-TDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLRN 119 (179)
T ss_pred EEEEEEE-eCCCCcccceEEEEcCCCC-CCCeEEEEEEEEeeccccccCCCccceEEEEEEeeecC
Confidence 4565554 4789999999998887643 25678999999854211 124589888555543
No 153
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=88.53 E-value=3.8 Score=29.26 Aligned_cols=57 Identities=11% Similarity=0.083 Sum_probs=38.6
Q ss_pred eeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC--C-------CCcccEEEEEecc
Q 047744 37 EHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL--T-------DGGFVGETVFSYI 95 (151)
Q Consensus 37 ~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~--~-------~d~~iG~~~~~~~ 95 (151)
...|.+.. .+.+|.|.|++...++..- ....+|.|+.++..-- . ....+|-+.+.+.
T Consensus 57 ~~~s~V~y-h~k~P~f~dEiKI~LP~~l-~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl 122 (185)
T cd08697 57 SAYAAVLH-HNQNPEFYDEIKIELPTQL-HEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLL 122 (185)
T ss_pred EEEEEEEE-cCCCCccceeEEEecCCcC-CCCeeEEEEEEeeccccccccccCCCccceEEEEEEeee
Confidence 34565655 4799999999988887643 2567899999986511 1 1245888884444
No 154
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=84.81 E-value=3 Score=36.47 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=50.2
Q ss_pred CCEEEEEEECCee-eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEEEeccccccccce
Q 047744 25 PSYYVIARCGNQE-HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVNQ 103 (151)
Q Consensus 25 ~dpyv~v~~~~~~-~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~ 103 (151)
.++|+.+.+.... .+|....+--.+|.|.+.|...... ....+.+.+-+.+..+.-..+|.+.
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h----~~g~v~~~~~~~~~~G~s~~w~~v~------------ 201 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAH----KAGYVIFRVKGARVPGWSKRWGRVK------------ 201 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccc----cccEEEEeecCCccccceeEEEEec------------
Confidence 4788887765443 3454444323789999888655554 3467888888888777667899999
Q ss_pred eeeecCcccccC
Q 047744 104 CRYYLGGIITDQ 115 (151)
Q Consensus 104 ~~i~l~~~~~~~ 115 (151)
++.-.+++..
T Consensus 202 --~s~~~~~~~~ 211 (887)
T KOG1329|consen 202 --ISFLQYCSGH 211 (887)
T ss_pred --cchhhhhccc
Confidence 7777776543
No 155
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=83.31 E-value=0.25 Score=41.64 Aligned_cols=62 Identities=8% Similarity=-0.085 Sum_probs=41.7
Q ss_pred CCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEE
Q 047744 24 TPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGET 90 (151)
Q Consensus 24 ~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~ 90 (151)
..+||+.+.+..........+..+..|.|+++|..++.. ...+.+.|++......+.+...+
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~-----~~~~~i~v~~~~~~~~~~~~a~~ 88 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVA-----GGAKNIIVLLKSPDPKALSEAQL 88 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeec-----CCceEEEEEecCCcchhhHHHhH
Confidence 468998887765443223335578999999999998765 35788889887644444333333
No 156
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=69.82 E-value=55 Score=26.07 Aligned_cols=93 Identities=12% Similarity=0.200 Sum_probs=57.5
Q ss_pred CCEEEEEEECCeeeEEeeeeCCCCCC--eeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEEEeccccccccc
Q 047744 25 PSYYVIARCGNQEHRSKNSMVKGEKA--WWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHDQTSVN 102 (151)
Q Consensus 25 ~dpyv~v~~~~~~~~T~~~~~~~~nP--~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~ 102 (151)
..-|+.+..+....+|..+.. +..- .-.+.....+.. -+.+|++.+|-.. +.+...||.+.
T Consensus 74 khiyIef~~Gr~d~TT~~IpT-sKK~RI~IqqRV~IkIRQ----cDnTLkI~lfKKk-Lvkk~hIgdI~----------- 136 (508)
T PTZ00447 74 KHIYIIFSTDKYDFTTDEIPT-NKKNRIHIDQRVDIKIRQ----CDETLRVDLFTTK-LTKKVHIGQIK----------- 136 (508)
T ss_pred eeEEEEEEcCceEEEcccccc-CcCceEEEeeeeeeeeee----cCceEEEEEEecc-ccceeEEEEEE-----------
Confidence 456777777766666644432 2222 223444444554 3478999999876 55667899999
Q ss_pred eeeeecC-ccccc-CCCcceeeeeeccccceecCCCccceEEEEEE
Q 047744 103 QCRYYLG-GIITD-QSNDKELIEVKPAPYNVLLEDDTYKGQIVIGF 146 (151)
Q Consensus 103 ~~~i~l~-~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~G~i~~~~ 146 (151)
+.+. +++.. -.. +.|+.+. ++|...+.|.+|+
T Consensus 137 ---InIn~dIIdk~FPK-nkWy~c~--------kDGq~~cRIqLSF 170 (508)
T PTZ00447 137 ---IDINASVISKSFPK-NEWFVCF--------KDGQEICKVQMSF 170 (508)
T ss_pred ---ecccHHHHhccCCc-cceEEEe--------cCCceeeeEEEEe
Confidence 6665 34432 222 4555542 6888889999887
No 157
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=67.42 E-value=15 Score=32.46 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=43.8
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCEEEEEEE----CCee----eEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEE
Q 047744 4 GILEVLLVNAEGIKHTNIFGTPSYYVIARC----GNQE----HRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRI 75 (151)
Q Consensus 4 g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~----~~~~----~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v 75 (151)
..++|+++++..+-. ....|-+|.+.. +.+. ..|+.+ ....+|.||+...|.+.-.+......|.+.|
T Consensus 343 ~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v-~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i 418 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEV-PGCSFPLWNEWLEFDIYIKDLPRMARLCLAI 418 (1076)
T ss_pred CceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCC-CCccchhccceeEeeeecCCCChhhhheeee
Confidence 346777877755522 223456665543 3332 223222 2367899999999988776644567788888
Q ss_pred EEC
Q 047744 76 MDT 78 (151)
Q Consensus 76 ~d~ 78 (151)
|.-
T Consensus 419 ~~v 421 (1076)
T KOG0904|consen 419 YAV 421 (1076)
T ss_pred eEe
Confidence 864
No 158
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=66.45 E-value=1.2 Score=37.70 Aligned_cols=58 Identities=21% Similarity=0.110 Sum_probs=41.5
Q ss_pred CCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCc
Q 047744 24 TPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGG 85 (151)
Q Consensus 24 ~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~ 85 (151)
+.++++...++.+..+|.... .+.+|+|||. .|+...-+ ..+.|...|.+++....++
T Consensus 304 ~~~~~~itsf~~~~frt~~~~-~~e~piyNe~-~~E~~~Fq--sn~~l~~kiv~~~~~~lnd 361 (975)
T KOG2419|consen 304 KDKWLAITSFGEQTFRTEISD-DTEKPIYNED-EREDSDFQ--SNRYLGNKIVGYCELDLND 361 (975)
T ss_pred CCCchheeecchhhhhhhhhc-cccccccccc-ccccccch--hhHHHhhhccccccccccc
Confidence 578999999999999988765 5899999997 45554432 3455666666666555555
No 159
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=61.48 E-value=36 Score=21.96 Aligned_cols=68 Identities=9% Similarity=0.105 Sum_probs=36.5
Q ss_pred cceEEEEEEECCC---CCCCcccEEEEEeccccccccceeeeecCcccc----cCCC--cceeeeeeccccceecCCCcc
Q 047744 68 LTHIKFRIMDTEL---LTDGGFVGETVFSYIHDQTSVNQCRYYLGGIIT----DQSN--DKELIEVKPAPYNVLLEDDTY 138 (151)
Q Consensus 68 ~~~L~v~v~d~~~---~~~d~~iG~~~~~~~~~~~~~~~~~i~l~~~~~----~~~~--~~~~~~l~~~~~~~~~~~~~~ 138 (151)
...|.+.+++--. ......||.+. +++.+.+. +... ........-..|.+..+.+..
T Consensus 28 ~~pl~i~~~~~~~~~~~~~~~liG~~~--------------i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~ 93 (112)
T PF14924_consen 28 SFPLYIVVKKVPPGFPTPPPMLIGSCP--------------ISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNP 93 (112)
T ss_pred CCceEEEEEecCCCCCCCccceeeEEE--------------ecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCce
Confidence 3567776665432 34556899999 66655431 0000 000000112234445567778
Q ss_pred ceEEEEEEEEE
Q 047744 139 KGQIVIGFKFI 149 (151)
Q Consensus 139 ~G~i~~~~~~~ 149 (151)
.|+|.+.++..
T Consensus 94 ~G~I~l~iRLs 104 (112)
T PF14924_consen 94 VGEISLYIRLS 104 (112)
T ss_pred eeeEEEEEEEe
Confidence 89999988763
No 160
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=53.08 E-value=24 Score=21.28 Aligned_cols=23 Identities=13% Similarity=0.398 Sum_probs=20.0
Q ss_pred ceEEEEEEECCCCCCCcccEEEE
Q 047744 69 THIKFRIMDTELLTDGGFVGETV 91 (151)
Q Consensus 69 ~~L~v~v~d~~~~~~d~~iG~~~ 91 (151)
....|++|+.+.+..|++|+.+.
T Consensus 12 ~~~~V~L~e~d~~~~Ddll~~~~ 34 (80)
T PF01060_consen 12 KNVKVKLWEDDYFDPDDLLDETK 34 (80)
T ss_pred CCCEEEEEECCCCCCCceeEEEE
Confidence 45679999999888999999988
No 161
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.04 E-value=13 Score=31.83 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=37.4
Q ss_pred CeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEEEecccc
Q 047744 50 AWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVFSYIHD 97 (151)
Q Consensus 50 P~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~~~~~~~ 97 (151)
-.|||=+.+.+...+.-.+..+.+++||...-+...++|..+++++.-
T Consensus 77 ~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~k 124 (843)
T KOG0906|consen 77 INWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFGK 124 (843)
T ss_pred cchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeecc
Confidence 349998888766655436788999999988767778999999887743
No 162
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=48.22 E-value=77 Score=20.78 Aligned_cols=87 Identities=14% Similarity=0.054 Sum_probs=48.6
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCee-ceEEEEEEeCCCccccceEEEEEEECCC-
Q 047744 3 GGILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWW-NEKFIFEFPMSDWKLLTHIKFRIMDTEL- 80 (151)
Q Consensus 3 ~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~w-ne~f~f~v~~~~~~~~~~L~v~v~d~~~- 80 (151)
...|.+.-+.-.+++..+..+...||+.+.-..+...++... ....... ...+.+.+...- .....+.|.+|+...
T Consensus 3 ~~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~-~l~GDV~i~~~~~~~~ 80 (134)
T PF10409_consen 3 PRPLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKS-YEDPKSYEQDSVIIELPKNL-PLRGDVLIKFYHKRSS 80 (134)
T ss_dssp --EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCT-CCCCCEEETTCEEEEEEEEE-EEESEEEEEEEECETT
T ss_pred CeeEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccc-eeccccccceeEEEEeCCCC-eEeCCEEEEEEeCCCc
Confidence 445666666667887776666789999998776655321111 1111111 123334333210 024578899999763
Q ss_pred CCCCcccEEEE
Q 047744 81 LTDGGFVGETV 91 (151)
Q Consensus 81 ~~~d~~iG~~~ 91 (151)
...++.|.++.
T Consensus 81 ~~~~~~~f~~~ 91 (134)
T PF10409_consen 81 SMSKEKMFRFW 91 (134)
T ss_dssp ECCCEEEEEEE
T ss_pred ccccCeEEEEE
Confidence 44567788888
No 163
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=47.58 E-value=93 Score=21.57 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=48.2
Q ss_pred EEEEeeCCCCCCCCCCCCEEEEEEEC----------Ce-eeEEeeeeCC----CCCCeeceEEEEEEeCCCccccceEEE
Q 047744 9 LLVNAEGIKHTNIFGTPSYYVIARCG----------NQ-EHRSKNSMVK----GEKAWWNEKFIFEFPMSDWKLLTHIKF 73 (151)
Q Consensus 9 ~v~~a~~L~~~~~~~~~dpyv~v~~~----------~~-~~~T~~~~~~----~~nP~wne~f~f~v~~~~~~~~~~L~v 73 (151)
.|.+|.+.. ..+-||+..+. .. ...|...+.. +..-.||..|.+.........--.|.|
T Consensus 7 ~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 456676443 34568876542 12 2344444321 334679987766554433112358999
Q ss_pred EEEECCCCCCCcccEEEEEe
Q 047744 74 RIMDTELLTDGGFVGETVFS 93 (151)
Q Consensus 74 ~v~d~~~~~~d~~iG~~~~~ 93 (151)
+||..|..+++...|...+.
T Consensus 81 ~V~~~D~~gr~~~~GYG~~~ 100 (168)
T PF07162_consen 81 QVYSLDSWGRDRVEGYGFCH 100 (168)
T ss_pred EEEEEcccCCeEEeEEeEEE
Confidence 99999999999999887633
No 164
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=43.21 E-value=1.1e+02 Score=20.97 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=50.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCC-eeceEEEEEEeCCC---------ccccceEEEEE
Q 047744 6 LEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKA-WWNEKFIFEFPMSD---------WKLLTHIKFRI 75 (151)
Q Consensus 6 L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP-~wne~f~f~v~~~~---------~~~~~~L~v~v 75 (151)
|+|.-+.+-|.--. .+.|-|..+.+-++-.+|.... ..=| .++|.|.|+-.... .+..+.+.+++
T Consensus 4 L~i~aVTCPGv~L~---~~~~vyL~v~~lg~~~~T~~~p--pvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iEL 78 (140)
T PF14909_consen 4 LEIHAVTCPGVWLC---DKGDVYLSVCILGQYKRTRCLP--PVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIEL 78 (140)
T ss_pred EEEEEEecCCeEeC---CCCCEEEEEEEcccEeecccCC--CcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEE
Confidence 44555555444222 3578999999999988886442 2223 25899999532111 12356888999
Q ss_pred EECCCCCCCcccEEEE
Q 047744 76 MDTELLTDGGFVGETV 91 (151)
Q Consensus 76 ~d~~~~~~d~~iG~~~ 91 (151)
+.+.... .+.|+..+
T Consensus 79 iQl~~~~-g~iLA~ye 93 (140)
T PF14909_consen 79 IQLVPPA-GEILAYYE 93 (140)
T ss_pred EEEeCCC-CcEEEEEe
Confidence 8876543 56888888
No 165
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=41.76 E-value=11 Score=33.30 Aligned_cols=67 Identities=13% Similarity=0.217 Sum_probs=45.7
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCEEEEEEEC-----CeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEE
Q 047744 2 KGGILEVLLVNAEGIKHTNIFGTPSYYVIARCG-----NQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIM 76 (151)
Q Consensus 2 ~~g~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~ 76 (151)
..|.+++.+.+|.+++.. ...||..... ..+.+|.+.+ .+..|.||+.+..++-. .+.++++.+
T Consensus 757 ~ygflh~~vhsat~lkqs-----~~lY~Td~v~e~~~~~s~~st~~ia-dT~~~~~npe~hv~~~~-----sqS~r~~~~ 825 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQS-----RNLYCTDEVDEFGYFVSKASTRVIA-DTAEPQWNPEKHVPVIE-----SQSSRLEKT 825 (1112)
T ss_pred cccceeeeeccccccccc-----cceeeehhhhhhccccccccceeee-cccCCCCChhcccchhh-----ccccchhhh
Confidence 357889999999888643 3567765432 3445677776 58999999999776654 345566666
Q ss_pred ECC
Q 047744 77 DTE 79 (151)
Q Consensus 77 d~~ 79 (151)
+.+
T Consensus 826 ek~ 828 (1112)
T KOG4269|consen 826 EKS 828 (1112)
T ss_pred ccc
Confidence 544
No 166
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=28.49 E-value=4.1e+02 Score=23.32 Aligned_cols=79 Identities=14% Similarity=0.270 Sum_probs=52.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCEEEEEEECCeeeEEeeeeCCCCCCeeceEEEEEEeCCCccccceEEEEEEECCCC---
Q 047744 5 ILEVLLVNAEGIKHTNIFGTPSYYVIARCGNQEHRSKNSMVKGEKAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELL--- 81 (151)
Q Consensus 5 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~~~nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~--- 81 (151)
.+.|.|.+.++|+...- .-=.||.+.+.+.+..|... ...-|.|.-+=.|.... ....+++.+|-....
T Consensus 342 smevvvmevqglksvap--nrivyctmevegeklqtdqa--easkp~wgtqgdfstth----plpvvkvklftestgvla 413 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAP--NRIVYCTMEVEGEKLQTDQA--EASKPKWGTQGDFSTTH----PLPVVKVKLFTESTGVLA 413 (1218)
T ss_pred eeeEEEeeeccccccCC--CeeEEEEEEecccccccchh--hhcCCCCCcCCCcccCC----CCceeEEEEEeecceeEE
Confidence 36678888889876431 12358888888877766543 35789999876665444 224567777765431
Q ss_pred CCCcccEEEE
Q 047744 82 TDGGFVGETV 91 (151)
Q Consensus 82 ~~d~~iG~~~ 91 (151)
-.|+-+|.+.
T Consensus 414 ledkelgrvi 423 (1218)
T KOG3543|consen 414 LEDKELGRVI 423 (1218)
T ss_pred eechhhCeEE
Confidence 2466789888
No 167
>KOG4028 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.76 E-value=2.3e+02 Score=19.23 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=27.7
Q ss_pred CCeeceEEEEEEeCCCccccceEEEEEEECCCCCCCcccEEEEE
Q 047744 49 KAWWNEKFIFEFPMSDWKLLTHIKFRIMDTELLTDGGFVGETVF 92 (151)
Q Consensus 49 nP~wne~f~f~v~~~~~~~~~~L~v~v~d~~~~~~d~~iG~~~~ 92 (151)
+..|...............=..|.+.||++|.+++.+.-|...+
T Consensus 54 ~a~~ahpidlh~at~~iqgwprl~~qiw~~dnfgr~eiagyg~~ 97 (175)
T KOG4028|consen 54 MAHFAHPIDLHFATKGIQGWPRLHFQIWHHDNFGRCEIAGYGFC 97 (175)
T ss_pred hhhhcCcceeeeecccccCCceeeeeeeecCcccceeecccceE
Confidence 34455544333333221133578999999999999888776653
No 168
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.31 E-value=2.9e+02 Score=19.47 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=20.3
Q ss_pred ceEEEEEEECCCCCCCcccEEEE
Q 047744 69 THIKFRIMDTELLTDGGFVGETV 91 (151)
Q Consensus 69 ~~L~v~v~d~~~~~~d~~iG~~~ 91 (151)
-.|.+.||..|.+++|-..|...
T Consensus 83 Pqivl~vfg~d~~G~d~v~GYg~ 105 (187)
T KOG4027|consen 83 PQIVLNVFGKDHSGKDCVTGYGM 105 (187)
T ss_pred ceEEEEEecCCcCCcceeeeeee
Confidence 47889999999999999888876
Done!