BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047746
         (247 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
           Cys2his2 Zinc Finger Induces Structural Rearrangements
           Of Typical Dna Base Determinant Positions
 pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From
           Arabidopsis Thaliana Superman Protein
          Length = 39

 Score = 39.3 bits (90), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 21/25 (84%)

Query: 93  RVFSCNYCRRKFYSSQALGGHQNAH 117
           R ++C++C+R+F S+QALGGH N H
Sbjct: 5   RSYTCSFCKREFRSAQALGGHMNVH 29


>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           415- 447) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 28.9 bits (63), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 93  RVFSCNYCRRKFYSSQALGGHQNAHKRER 121
           ++F CN C++ F  S +L  HQ  H  E+
Sbjct: 11  KLFKCNECKKTFTQSSSLTVHQRIHTGEK 39


>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
           Zinc Finger Protein 406
          Length = 36

 Score = 28.9 bits (63), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 93  RVFSCNYCRRKFYSSQALGGHQNAHKRER 121
           ++F+C YC + F    +L  H   H  E+
Sbjct: 8   KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36


>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
           Finger Dna-Binding Domain
          Length = 27

 Score = 28.9 bits (63), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 95  FSCNYCRRKFYSSQALGGHQNAHK 118
           + C  C R F    AL  HQ  HK
Sbjct: 2   YKCGLCERSFVEKSALSRHQRVHK 25


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,358,973
Number of Sequences: 62578
Number of extensions: 280633
Number of successful extensions: 490
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 481
Number of HSP's gapped (non-prelim): 9
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)