BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047747
         (748 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
           Dehydrogenase Isoform 1 From K. Marxianus
 pdb|2I5P|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
           Dehydrogenase Isoform 1 From K. Marxianus
          Length = 342

 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 343 LGKELETLRGKISNMEQQLESSKQEVSDLSQNLT--ATEEENKSLTLKISE 391
           +GK L  L+GK++ M  ++ ++   V DL+  L   AT +E K+   K+SE
Sbjct: 227 VGKVLPELQGKLTGMAFRVPTTDVSVVDLTVKLVKAATYDEIKAAVKKVSE 277


>pdb|3L87|A Chain A, The Crystal Structure Of Smu.143c From Streptococcus
           Mutans Ua159
          Length = 238

 Score = 29.6 bits (65), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 20/84 (23%)

Query: 304 DKDNLIMEKETVLRRVEE-------------GEKIAEDLRNSADQLNEEKLVLGKELETL 350
           D +++I E    LR V +             GEK+ + L+NS D +  EK+        L
Sbjct: 49  DMNDIIREGHPTLRAVAQDVTFPLNEDDIILGEKMLQFLKNSQDPVTAEKM-------EL 101

Query: 351 RGKISNMEQQLESSKQEVSDLSQN 374
           RG +     QL+ SK+ ++ L  N
Sbjct: 102 RGGVGLAAPQLDISKRIIAVLIPN 125


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.306    0.125    0.310 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,921,781
Number of Sequences: 62578
Number of extensions: 629368
Number of successful extensions: 2591
Number of sequences better than 100.0: 198
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 2165
Number of HSP's gapped (non-prelim): 481
length of query: 748
length of database: 14,973,337
effective HSP length: 106
effective length of query: 642
effective length of database: 8,340,069
effective search space: 5354324298
effective search space used: 5354324298
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)