Query 047747
Match_columns 748
No_of_seqs 611 out of 3316
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:46:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07765 KIP1: KIP1-like prote 100.0 9.2E-33 2E-37 205.6 6.1 68 11-78 1-74 (74)
2 COG1196 Smc Chromosome segrega 100.0 1.3E-23 2.7E-28 254.4 64.1 542 136-698 384-1025(1163)
3 TIGR02169 SMC_prok_A chromosom 100.0 1.3E-22 2.8E-27 252.0 70.7 544 137-698 387-1034(1164)
4 KOG0996 Structural maintenance 99.9 1.6E-21 3.4E-26 215.6 60.5 284 131-423 475-849 (1293)
5 KOG0964 Structural maintenance 99.9 5.4E-17 1.2E-21 176.2 59.5 277 134-427 396-739 (1200)
6 KOG0933 Structural maintenance 99.9 7.5E-17 1.6E-21 176.0 52.7 277 24-344 318-663 (1174)
7 TIGR02168 SMC_prok_B chromosom 99.9 1.1E-15 2.4E-20 190.7 64.7 348 347-698 672-1044(1179)
8 KOG0018 Structural maintenance 99.8 2.8E-16 6.1E-21 173.4 50.5 398 124-554 362-840 (1141)
9 KOG0161 Myosin class II heavy 99.8 1.5E-09 3.3E-14 131.5 86.1 76 599-674 1467-1542(1930)
10 TIGR02168 SMC_prok_B chromosom 99.7 3.4E-11 7.4E-16 150.5 72.3 145 352-500 670-814 (1179)
11 KOG0161 Myosin class II heavy 99.7 2.8E-09 6.1E-14 129.3 83.4 100 627-726 1720-1823(1930)
12 TIGR00606 rad50 rad50. This fa 99.7 7.5E-10 1.6E-14 136.8 71.4 132 346-494 745-876 (1311)
13 TIGR02169 SMC_prok_A chromosom 99.7 9.4E-09 2E-13 128.4 82.4 167 564-730 802-977 (1164)
14 COG1196 Smc Chromosome segrega 99.7 3.9E-08 8.4E-13 120.3 82.8 24 708-731 946-969 (1163)
15 PRK02224 chromosome segregatio 99.6 4.8E-09 1E-13 126.1 72.7 14 708-721 738-751 (880)
16 PF10174 Cast: RIM-binding pro 99.6 1.8E-08 3.9E-13 113.8 68.4 28 62-89 4-31 (775)
17 PRK02224 chromosome segregatio 99.6 2.9E-08 6.4E-13 119.4 75.3 6 715-720 738-743 (880)
18 TIGR00606 rad50 rad50. This fa 99.6 1E-07 2.2E-12 118.1 75.8 26 20-45 297-322 (1311)
19 PF10174 Cast: RIM-binding pro 99.6 1.1E-07 2.3E-12 107.7 67.5 23 128-150 10-32 (775)
20 PRK03918 chromosome segregatio 99.5 5.5E-07 1.2E-11 108.7 75.9 40 389-428 393-432 (880)
21 KOG4674 Uncharacterized conser 99.5 5.4E-07 1.2E-11 107.9 83.0 72 140-211 659-730 (1822)
22 KOG4674 Uncharacterized conser 99.5 8.6E-07 1.9E-11 106.3 80.8 151 358-512 681-835 (1822)
23 PRK03918 chromosome segregatio 99.4 3.3E-06 7.2E-11 102.0 77.1 27 125-151 159-185 (880)
24 PF01576 Myosin_tail_1: Myosin 99.3 7.4E-13 1.6E-17 154.3 0.0 31 55-85 61-91 (859)
25 PRK01156 chromosome segregatio 99.2 5.5E-05 1.2E-09 91.3 77.7 45 132-176 194-238 (895)
26 KOG0933 Structural maintenance 99.2 3E-05 6.6E-10 86.8 67.2 213 520-732 747-986 (1174)
27 KOG0964 Structural maintenance 99.1 4.2E-05 9.1E-10 85.3 71.8 112 131-243 180-296 (1200)
28 KOG0996 Structural maintenance 99.1 6.4E-05 1.4E-09 85.8 76.0 23 709-731 1076-1098(1293)
29 PF01576 Myosin_tail_1: Myosin 99.1 2E-11 4.3E-16 142.4 0.0 23 705-727 715-737 (859)
30 PRK01156 chromosome segregatio 99.0 0.00019 4.2E-09 86.6 73.1 31 391-421 413-443 (895)
31 PF07888 CALCOCO1: Calcium bin 99.0 6.3E-05 1.4E-09 81.0 45.9 34 347-380 145-178 (546)
32 PF07888 CALCOCO1: Calcium bin 99.0 8E-05 1.7E-09 80.2 45.2 42 639-680 412-453 (546)
33 PRK04778 septation ring format 99.0 0.00019 4E-09 81.3 51.7 170 560-735 383-561 (569)
34 KOG0250 DNA repair protein RAD 99.0 0.00021 4.5E-09 81.7 56.9 60 443-502 737-796 (1074)
35 PRK04778 septation ring format 99.0 4.8E-05 1E-09 86.0 45.3 118 618-736 350-479 (569)
36 PF12128 DUF3584: Protein of u 98.9 0.0007 1.5E-08 83.6 80.4 70 444-513 604-673 (1201)
37 PF05701 WEMBL: Weak chloropla 98.8 0.00079 1.7E-08 75.1 58.1 9 143-151 35-43 (522)
38 PF00261 Tropomyosin: Tropomyo 98.7 4.4E-05 9.5E-10 76.0 31.3 124 568-691 107-230 (237)
39 PF00038 Filament: Intermediat 98.7 0.00044 9.5E-09 72.5 40.1 30 354-383 6-35 (312)
40 KOG0976 Rho/Rac1-interacting s 98.7 0.0013 2.8E-08 72.0 64.1 57 126-182 90-146 (1265)
41 PF00261 Tropomyosin: Tropomyo 98.7 7.5E-05 1.6E-09 74.3 30.6 75 573-647 147-221 (237)
42 KOG4643 Uncharacterized coiled 98.6 0.0023 5E-08 72.2 57.7 51 196-246 175-225 (1195)
43 KOG0977 Nuclear envelope prote 98.5 0.0013 2.9E-08 71.1 37.2 75 620-697 293-367 (546)
44 KOG0977 Nuclear envelope prote 98.5 0.0016 3.4E-08 70.5 37.3 37 352-388 42-78 (546)
45 PF09730 BicD: Microtubule-ass 98.5 0.0048 1E-07 69.6 43.8 115 353-468 35-149 (717)
46 PF12128 DUF3584: Protein of u 98.5 0.011 2.5E-07 73.1 79.7 34 223-256 356-389 (1201)
47 PF09730 BicD: Microtubule-ass 98.5 0.0055 1.2E-07 69.1 61.1 61 132-192 31-91 (717)
48 KOG4643 Uncharacterized coiled 98.5 0.0059 1.3E-07 69.1 61.6 38 346-383 302-339 (1195)
49 KOG0971 Microtubule-associated 98.5 0.0055 1.2E-07 68.3 40.6 116 398-513 322-441 (1243)
50 KOG0994 Extracellular matrix g 98.4 0.0088 1.9E-07 68.4 52.9 46 196-241 1230-1275(1758)
51 PF05483 SCP-1: Synaptonemal c 98.4 0.0068 1.5E-07 65.9 78.5 81 174-254 230-310 (786)
52 PF05701 WEMBL: Weak chloropla 98.4 0.0094 2E-07 66.6 67.2 52 132-183 31-82 (522)
53 KOG0971 Microtubule-associated 98.3 0.01 2.2E-07 66.3 41.3 21 350-370 229-249 (1243)
54 PRK04863 mukB cell division pr 98.3 0.023 5E-07 70.4 71.9 52 633-684 1063-1114(1486)
55 PF05557 MAD: Mitotic checkpoi 98.3 4.7E-06 1E-10 97.2 13.8 28 666-693 607-634 (722)
56 PF15070 GOLGA2L5: Putative go 98.3 0.012 2.6E-07 66.1 39.6 93 525-628 164-256 (617)
57 KOG0962 DNA repair protein RAD 98.3 0.023 5E-07 67.3 60.8 58 440-497 819-876 (1294)
58 PF06160 EzrA: Septation ring 98.3 0.017 3.7E-07 65.2 53.9 55 559-613 378-432 (560)
59 PF05483 SCP-1: Synaptonemal c 98.2 0.016 3.5E-07 63.1 78.0 104 155-258 98-201 (786)
60 KOG0976 Rho/Rac1-interacting s 98.2 0.019 4.2E-07 63.2 62.4 22 262-283 177-198 (1265)
61 KOG0018 Structural maintenance 98.2 0.029 6.4E-07 64.4 61.8 38 125-162 157-194 (1141)
62 PF06160 EzrA: Septation ring 98.1 0.029 6.3E-07 63.4 54.1 31 399-429 304-334 (560)
63 COG1340 Uncharacterized archae 98.1 0.012 2.6E-07 58.4 35.8 46 452-497 39-84 (294)
64 PF05667 DUF812: Protein of un 98.1 0.019 4.2E-07 64.3 34.0 140 574-721 447-588 (594)
65 KOG0250 DNA repair protein RAD 97.9 0.084 1.8E-06 61.3 68.2 115 137-254 202-316 (1074)
66 COG1340 Uncharacterized archae 97.9 0.035 7.7E-07 55.3 36.1 9 688-696 267-275 (294)
67 PHA02562 46 endonuclease subun 97.9 0.0068 1.5E-07 69.4 27.7 8 737-744 498-505 (562)
68 PHA02562 46 endonuclease subun 97.9 0.024 5.3E-07 64.9 31.7 36 446-481 173-208 (562)
69 PF09726 Macoilin: Transmembra 97.9 0.033 7.3E-07 63.7 31.9 35 638-672 623-657 (697)
70 COG1579 Zn-ribbon protein, pos 97.8 0.0015 3.2E-08 63.4 18.0 39 628-666 94-132 (239)
71 PF05667 DUF812: Protein of un 97.8 0.093 2E-06 58.9 36.6 33 523-555 449-481 (594)
72 KOG0612 Rho-associated, coiled 97.8 0.15 3.2E-06 59.8 42.2 7 21-27 132-138 (1317)
73 PF15070 GOLGA2L5: Putative go 97.8 0.12 2.5E-06 58.5 45.0 38 147-184 27-64 (617)
74 PRK11637 AmiB activator; Provi 97.8 0.046 1E-06 59.9 31.0 10 409-418 48-57 (428)
75 PF09726 Macoilin: Transmembra 97.8 0.024 5.3E-07 64.8 29.0 64 634-697 591-654 (697)
76 PF05557 MAD: Mitotic checkpoi 97.7 0.00029 6.3E-09 82.3 13.8 73 623-695 566-643 (722)
77 PF04849 HAP1_N: HAP1 N-termin 97.6 0.082 1.8E-06 53.2 26.9 138 523-660 162-299 (306)
78 KOG0978 E3 ubiquitin ligase in 97.6 0.21 4.4E-06 56.2 65.2 56 639-694 561-616 (698)
79 COG1579 Zn-ribbon protein, pos 97.6 0.03 6.5E-07 54.5 22.7 64 354-417 19-82 (239)
80 KOG0978 E3 ubiquitin ligase in 97.5 0.26 5.6E-06 55.4 64.8 14 710-723 607-620 (698)
81 PF09728 Taxilin: Myosin-like 97.5 0.15 3.3E-06 52.6 41.9 15 483-497 136-150 (309)
82 PF12718 Tropomyosin_1: Tropom 97.5 0.04 8.6E-07 49.8 20.7 52 445-496 78-129 (143)
83 PRK04863 mukB cell division pr 97.4 0.76 1.7E-05 57.5 77.9 19 708-726 1031-1049(1486)
84 PF12718 Tropomyosin_1: Tropom 97.3 0.083 1.8E-06 47.7 20.4 23 357-379 5-27 (143)
85 PF14662 CCDC155: Coiled-coil 97.3 0.16 3.6E-06 47.0 27.5 14 450-463 18-31 (193)
86 KOG0946 ER-Golgi vesicle-tethe 97.1 0.68 1.5E-05 52.1 32.6 19 399-417 683-701 (970)
87 PF15619 Lebercilin: Ciliary p 97.1 0.26 5.6E-06 47.0 24.8 31 524-554 121-151 (194)
88 KOG0995 Centromere-associated 97.1 0.56 1.2E-05 50.9 41.9 28 453-480 293-320 (581)
89 PF14915 CCDC144C: CCDC144C pr 97.1 0.33 7.2E-06 48.2 39.7 12 352-363 6-17 (305)
90 KOG1029 Endocytic adaptor prot 97.0 0.81 1.7E-05 51.0 35.2 30 526-555 435-464 (1118)
91 PF05622 HOOK: HOOK protein; 97.0 0.00049 1.1E-08 80.3 4.0 19 709-727 552-570 (713)
92 PRK09039 hypothetical protein; 97.0 0.13 2.8E-06 54.2 21.4 10 354-363 48-57 (343)
93 COG4942 Membrane-bound metallo 97.0 0.69 1.5E-05 48.9 27.9 61 351-411 44-104 (420)
94 PF10473 CENP-F_leu_zip: Leuci 96.9 0.24 5.3E-06 44.0 19.1 34 568-601 11-44 (140)
95 COG4477 EzrA Negative regulato 96.9 0.82 1.8E-05 49.2 50.4 53 207-259 106-158 (570)
96 PRK09039 hypothetical protein; 96.9 0.26 5.6E-06 51.9 22.6 21 527-547 45-65 (343)
97 PF05622 HOOK: HOOK protein; 96.8 0.00028 6E-09 82.3 0.0 19 62-80 68-86 (713)
98 PF10473 CENP-F_leu_zip: Leuci 96.8 0.34 7.4E-06 43.1 19.4 45 450-494 55-99 (140)
99 TIGR03185 DNA_S_dndD DNA sulfu 96.8 1.6 3.4E-05 50.8 40.1 77 351-427 208-288 (650)
100 KOG1029 Endocytic adaptor prot 96.8 1.3 2.9E-05 49.4 38.1 25 720-744 699-723 (1118)
101 PF04849 HAP1_N: HAP1 N-termin 96.7 0.89 1.9E-05 46.0 26.1 26 529-554 161-186 (306)
102 KOG4673 Transcription factor T 96.7 1.4 3.1E-05 48.4 63.3 17 677-693 909-925 (961)
103 KOG4673 Transcription factor T 96.6 1.6 3.4E-05 48.2 64.6 33 196-228 407-439 (961)
104 PF08614 ATG16: Autophagy prot 96.6 0.034 7.3E-07 53.5 12.3 25 60-84 16-40 (194)
105 PF09789 DUF2353: Uncharacteri 96.6 1.1 2.4E-05 45.8 25.7 136 519-654 84-227 (319)
106 COG4477 EzrA Negative regulato 96.5 1.5 3.3E-05 47.2 44.7 15 275-291 17-31 (570)
107 KOG1003 Actin filament-coating 96.4 0.77 1.7E-05 42.6 26.1 74 618-691 125-198 (205)
108 PF05010 TACC: Transforming ac 96.4 0.94 2E-05 43.5 28.5 36 449-484 71-106 (207)
109 COG4372 Uncharacterized protei 96.4 1.4 2.9E-05 45.2 31.0 6 334-339 51-56 (499)
110 COG4372 Uncharacterized protei 96.4 1.4 3.1E-05 45.1 31.1 27 401-427 74-100 (499)
111 KOG4593 Mitotic checkpoint pro 96.3 2.4 5.2E-05 47.3 69.4 33 666-698 601-633 (716)
112 KOG0980 Actin-binding protein 96.3 2.8 6.1E-05 47.9 32.2 22 65-86 90-111 (980)
113 COG4942 Membrane-bound metallo 96.3 1.9 4.1E-05 45.7 31.3 22 466-487 78-99 (420)
114 TIGR03185 DNA_S_dndD DNA sulfu 96.2 3.6 7.9E-05 47.8 43.8 37 624-660 429-465 (650)
115 PF14915 CCDC144C: CCDC144C pr 96.0 1.9 4E-05 43.1 38.7 117 565-695 149-265 (305)
116 KOG0963 Transcription factor/C 96.0 3.2 6.9E-05 45.7 44.2 29 707-735 414-442 (629)
117 PF08317 Spc7: Spc7 kinetochor 96.0 1.2 2.5E-05 46.8 21.2 58 441-498 210-267 (325)
118 KOG0612 Rho-associated, coiled 96.0 5.1 0.00011 47.7 55.1 8 6-13 258-265 (1317)
119 KOG0963 Transcription factor/C 95.9 3.6 7.9E-05 45.3 44.1 33 519-551 308-340 (629)
120 PF15619 Lebercilin: Ciliary p 95.9 1.7 3.7E-05 41.5 24.3 28 346-373 13-40 (194)
121 COG0419 SbcC ATPase involved i 95.8 6.8 0.00015 47.6 82.3 25 128-152 171-195 (908)
122 PF05010 TACC: Transforming ac 95.7 2.1 4.6E-05 41.1 27.2 51 448-498 84-134 (207)
123 KOG0962 DNA repair protein RAD 95.6 7.8 0.00017 47.0 70.1 83 117-199 173-259 (1294)
124 KOG0979 Structural maintenance 95.5 6.9 0.00015 45.7 57.0 103 126-228 253-355 (1072)
125 KOG4593 Mitotic checkpoint pro 95.4 6 0.00013 44.3 61.3 14 706-719 561-574 (716)
126 TIGR03007 pepcterm_ChnLen poly 95.2 4.7 0.0001 45.4 23.9 21 352-372 168-188 (498)
127 smart00787 Spc7 Spc7 kinetocho 95.2 3.8 8.3E-05 42.4 20.9 57 442-498 206-262 (312)
128 COG5185 HEC1 Protein involved 94.8 6.4 0.00014 41.7 38.0 30 441-470 369-398 (622)
129 PF08317 Spc7: Spc7 kinetochor 94.1 8.9 0.00019 40.2 28.7 15 704-718 276-290 (325)
130 PF07111 HCR: Alpha helical co 93.8 14 0.00031 41.5 66.6 33 651-683 589-621 (739)
131 PF10481 CENP-F_N: Cenp-F N-te 93.8 7.4 0.00016 38.2 18.6 61 448-508 68-128 (307)
132 PF08614 ATG16: Autophagy prot 93.8 0.9 2E-05 43.7 11.7 71 347-417 69-139 (194)
133 PF05911 DUF869: Plant protein 93.7 17 0.00038 42.4 63.2 107 623-729 652-765 (769)
134 PF13870 DUF4201: Domain of un 93.6 6.7 0.00015 37.0 22.3 38 573-610 48-85 (177)
135 PF04156 IncA: IncA protein; 93.5 5.5 0.00012 38.2 16.9 36 132-167 85-120 (191)
136 PF10481 CENP-F_N: Cenp-F N-te 93.4 4.4 9.5E-05 39.7 15.2 62 622-683 66-127 (307)
137 TIGR03007 pepcterm_ChnLen poly 93.2 18 0.00039 40.7 23.8 29 522-550 205-233 (498)
138 PF09787 Golgin_A5: Golgin sub 92.9 19 0.00041 40.5 35.5 8 649-656 390-397 (511)
139 PF12325 TMF_TATA_bd: TATA ele 92.4 6.8 0.00015 34.1 15.0 8 484-491 98-105 (120)
140 COG0419 SbcC ATPase involved i 92.4 33 0.00072 41.8 78.3 21 66-86 169-189 (908)
141 TIGR01843 type_I_hlyD type I s 92.3 20 0.00044 39.2 24.1 15 353-367 82-96 (423)
142 KOG4360 Uncharacterized coiled 92.1 20 0.00043 38.7 22.2 101 562-662 200-300 (596)
143 PF13851 GAS: Growth-arrest sp 92.0 12 0.00026 36.1 23.7 36 346-381 28-63 (201)
144 PF09789 DUF2353: Uncharacteri 91.9 17 0.00037 37.4 30.8 41 388-428 10-50 (319)
145 PF10267 Tmemb_cc2: Predicted 91.5 16 0.00035 38.9 18.1 14 33-46 27-40 (395)
146 KOG1937 Uncharacterized conser 91.5 21 0.00046 37.8 33.3 27 446-472 292-318 (521)
147 TIGR01005 eps_transp_fam exopo 91.5 37 0.00079 40.5 24.9 27 523-549 239-265 (754)
148 PF07111 HCR: Alpha helical co 91.4 29 0.00063 39.2 67.4 54 324-377 218-274 (739)
149 PF04111 APG6: Autophagy prote 91.4 4.6 9.9E-05 42.0 14.0 76 170-245 50-125 (314)
150 KOG4809 Rab6 GTPase-interactin 91.3 25 0.00054 38.3 34.7 113 439-551 330-451 (654)
151 PF12777 MT: Microtubule-bindi 90.9 24 0.00052 37.4 27.3 24 137-160 10-33 (344)
152 PF12325 TMF_TATA_bd: TATA ele 90.9 10 0.00022 33.0 15.3 17 347-363 18-34 (120)
153 PF10146 zf-C4H2: Zinc finger- 90.7 14 0.0003 36.4 15.7 45 171-215 33-77 (230)
154 PF13514 AAA_27: AAA domain 90.7 54 0.0012 41.0 74.0 35 126-160 240-274 (1111)
155 PF04582 Reo_sigmaC: Reovirus 90.6 0.54 1.2E-05 47.9 6.1 27 345-371 28-54 (326)
156 KOG0999 Microtubule-associated 90.4 30 0.00066 37.6 71.2 158 57-242 4-172 (772)
157 PF06470 SMC_hinge: SMC protei 90.3 0.019 4.1E-07 50.6 -4.2 37 262-303 10-66 (120)
158 KOG4360 Uncharacterized coiled 89.7 33 0.00072 37.1 18.5 33 579-611 210-242 (596)
159 PF13870 DUF4201: Domain of un 89.5 19 0.00041 34.0 23.8 46 440-485 42-87 (177)
160 PF09738 DUF2051: Double stran 89.4 27 0.00059 35.9 17.2 47 130-176 79-125 (302)
161 PF10146 zf-C4H2: Zinc finger- 89.4 15 0.00033 36.1 14.7 13 150-162 33-45 (230)
162 KOG1850 Myosin-like coiled-coi 89.2 26 0.00057 35.3 42.3 21 645-665 300-320 (391)
163 PF13514 AAA_27: AAA domain 88.7 74 0.0016 39.8 72.5 64 23-86 305-371 (1111)
164 PF04582 Reo_sigmaC: Reovirus 88.3 0.99 2.1E-05 46.0 5.9 51 445-495 103-153 (326)
165 COG4026 Uncharacterized protei 88.2 8.2 0.00018 36.6 11.2 7 71-77 72-78 (290)
166 PF10498 IFT57: Intra-flagella 88.1 19 0.00041 38.1 15.5 36 577-612 283-318 (359)
167 TIGR00634 recN DNA repair prot 87.8 56 0.0012 37.3 26.4 8 737-744 464-471 (563)
168 KOG1937 Uncharacterized conser 87.4 44 0.00095 35.6 36.6 30 520-549 388-417 (521)
169 PF04111 APG6: Autophagy prote 87.4 16 0.00034 38.1 14.3 25 175-199 48-72 (314)
170 PF15397 DUF4618: Domain of un 86.1 39 0.00084 33.7 30.5 13 535-547 88-100 (258)
171 PRK10884 SH3 domain-containing 86.0 16 0.00036 35.2 12.6 34 124-157 82-115 (206)
172 PF13851 GAS: Growth-arrest sp 85.8 35 0.00076 32.9 25.3 17 673-689 151-167 (201)
173 PF15066 CAGE1: Cancer-associa 85.6 55 0.0012 35.0 26.9 33 61-95 51-83 (527)
174 KOG0804 Cytoplasmic Zn-finger 85.6 50 0.0011 35.2 16.4 8 295-302 179-186 (493)
175 COG4026 Uncharacterized protei 85.5 12 0.00026 35.5 10.7 66 619-684 138-203 (290)
176 PF00769 ERM: Ezrin/radixin/mo 85.2 43 0.00094 33.5 18.4 97 142-238 5-101 (246)
177 PRK15422 septal ring assembly 84.9 17 0.00037 28.6 10.4 65 174-238 8-72 (79)
178 PF06785 UPF0242: Uncharacteri 84.9 48 0.001 33.8 19.9 11 323-337 46-56 (401)
179 PF10186 Atg14: UV radiation r 83.9 56 0.0012 33.7 20.5 22 132-153 24-45 (302)
180 PF06818 Fez1: Fez1; InterPro 83.4 43 0.00093 32.0 20.9 8 410-417 89-96 (202)
181 PRK15422 septal ring assembly 83.1 21 0.00045 28.1 9.6 15 658-672 53-67 (79)
182 KOG0804 Cytoplasmic Zn-finger 83.0 70 0.0015 34.2 18.1 6 148-153 353-358 (493)
183 PF12795 MscS_porin: Mechanose 82.8 54 0.0012 32.7 23.3 54 558-611 83-136 (240)
184 PF15290 Syntaphilin: Golgi-lo 82.3 50 0.0011 32.8 13.9 41 573-613 67-107 (305)
185 PF09738 DUF2051: Double stran 80.9 36 0.00078 35.0 13.2 68 193-260 107-174 (302)
186 TIGR01000 bacteriocin_acc bact 80.4 1E+02 0.0022 34.2 24.5 7 448-454 105-111 (457)
187 TIGR02680 conserved hypothetic 80.0 1.9E+02 0.0041 37.1 56.8 451 127-584 275-990 (1353)
188 COG3074 Uncharacterized protei 78.9 26 0.00056 26.6 9.4 18 654-671 49-66 (79)
189 COG2433 Uncharacterized conser 78.9 41 0.00088 37.4 13.4 29 523-551 476-504 (652)
190 PF14197 Cep57_CLD_2: Centroso 78.8 28 0.00061 26.9 9.4 32 351-382 4-35 (69)
191 PF08055 Trp_leader1: Tryptoph 78.6 0.72 1.6E-05 24.0 0.1 9 10-18 7-15 (18)
192 TIGR03017 EpsF chain length de 78.2 1.1E+02 0.0025 33.6 25.2 23 351-373 177-199 (444)
193 KOG0288 WD40 repeat protein Ti 78.1 97 0.0021 32.8 17.6 96 131-226 9-104 (459)
194 KOG1899 LAR transmembrane tyro 77.6 1.2E+02 0.0027 33.8 20.4 39 385-423 109-147 (861)
195 PF04012 PspA_IM30: PspA/IM30 77.6 74 0.0016 31.2 22.0 13 715-727 193-205 (221)
196 PF11559 ADIP: Afadin- and alp 76.9 60 0.0013 29.6 17.8 8 685-692 139-146 (151)
197 COG3074 Uncharacterized protei 75.9 32 0.0007 26.1 10.1 59 179-237 13-71 (79)
198 PF08581 Tup_N: Tup N-terminal 75.7 39 0.00085 26.9 9.5 51 632-682 6-56 (79)
199 KOG1899 LAR transmembrane tyro 75.4 1.4E+02 0.0031 33.3 20.7 18 346-363 105-122 (861)
200 COG2433 Uncharacterized conser 75.2 64 0.0014 36.0 13.6 6 332-337 262-267 (652)
201 PF12795 MscS_porin: Mechanose 73.7 1E+02 0.0022 30.7 24.2 27 396-422 108-134 (240)
202 KOG0972 Huntingtin interacting 72.5 1.1E+02 0.0024 30.7 13.7 54 560-613 273-326 (384)
203 PF09755 DUF2046: Uncharacteri 72.2 1.2E+02 0.0026 31.1 36.7 15 576-590 231-245 (310)
204 PRK10869 recombination and rep 72.0 1.8E+02 0.004 33.0 27.2 7 738-744 455-461 (553)
205 KOG1962 B-cell receptor-associ 71.5 94 0.002 30.1 12.3 15 178-192 152-166 (216)
206 TIGR02338 gimC_beta prefoldin, 70.7 68 0.0015 27.5 12.4 17 574-590 10-26 (110)
207 PF07106 TBPIP: Tat binding pr 69.3 71 0.0015 29.8 11.3 7 278-284 8-14 (169)
208 PF14992 TMCO5: TMCO5 family 69.0 1.4E+02 0.0029 30.3 16.6 31 523-553 65-95 (280)
209 PRK10869 recombination and rep 68.7 2.2E+02 0.0047 32.5 26.3 18 626-643 299-316 (553)
210 KOG0249 LAR-interacting protei 68.5 2.2E+02 0.0048 32.6 22.8 24 628-651 228-251 (916)
211 KOG2991 Splicing regulator [RN 67.9 1.3E+02 0.0028 29.6 23.8 18 401-418 108-125 (330)
212 PF13166 AAA_13: AAA domain 67.7 2.6E+02 0.0056 33.0 26.2 7 728-734 530-536 (712)
213 PRK10361 DNA recombination pro 66.9 2.1E+02 0.0045 31.6 22.8 53 536-588 141-193 (475)
214 PF08647 BRE1: BRE1 E3 ubiquit 66.7 75 0.0016 26.5 12.7 26 132-157 14-39 (96)
215 PF10267 Tmemb_cc2: Predicted 66.1 1.9E+02 0.0042 31.0 15.6 21 564-584 248-268 (395)
216 PF08647 BRE1: BRE1 E3 ubiquit 64.5 83 0.0018 26.2 12.3 11 646-656 47-57 (96)
217 PF04912 Dynamitin: Dynamitin 63.7 2.2E+02 0.0047 30.8 25.8 58 659-716 330-387 (388)
218 PF15290 Syntaphilin: Golgi-lo 63.5 1.7E+02 0.0036 29.4 14.7 18 568-585 150-167 (305)
219 PRK04406 hypothetical protein; 63.1 54 0.0012 25.9 7.5 12 709-720 44-55 (75)
220 COG1382 GimC Prefoldin, chaper 62.6 1E+02 0.0023 26.7 13.3 37 660-696 72-108 (119)
221 PF11932 DUF3450: Protein of u 61.3 1.8E+02 0.004 29.1 16.9 36 147-182 40-75 (251)
222 PF07106 TBPIP: Tat binding pr 61.2 52 0.0011 30.7 8.7 35 521-555 72-106 (169)
223 KOG0999 Microtubule-associated 60.7 2.7E+02 0.0058 30.8 64.7 31 56-86 45-75 (772)
224 PRK02119 hypothetical protein; 58.0 59 0.0013 25.5 6.9 16 707-722 40-55 (73)
225 PF14073 Cep57_CLD: Centrosome 56.9 1.7E+02 0.0037 27.4 21.3 9 326-334 3-11 (178)
226 KOG1962 B-cell receptor-associ 56.4 2E+02 0.0043 27.9 12.3 14 222-235 182-195 (216)
227 KOG2264 Exostosin EXT1L [Signa 56.1 99 0.0021 34.0 10.3 31 200-230 109-139 (907)
228 PF03915 AIP3: Actin interacti 55.8 3E+02 0.0066 29.9 16.5 34 497-530 152-185 (424)
229 COG1730 GIM5 Predicted prefold 55.2 1.6E+02 0.0035 26.6 12.7 39 649-687 92-130 (145)
230 PF07851 TMPIT: TMPIT-like pro 55.0 72 0.0016 33.2 8.9 35 705-740 69-103 (330)
231 PF10234 Cluap1: Clusterin-ass 54.8 2.4E+02 0.0052 28.4 18.7 40 626-665 221-260 (267)
232 KOG2751 Beclin-like protein [S 54.3 3.1E+02 0.0066 29.5 15.7 65 178-242 191-255 (447)
233 PF04949 Transcrip_act: Transc 54.0 1.7E+02 0.0036 26.3 17.6 19 626-644 87-105 (159)
234 KOG2991 Splicing regulator [RN 53.8 2.3E+02 0.005 27.9 23.9 24 532-555 181-204 (330)
235 PF04912 Dynamitin: Dynamitin 53.5 3.2E+02 0.0069 29.5 20.1 12 354-365 211-222 (388)
236 PF05266 DUF724: Protein of un 52.8 2.1E+02 0.0046 27.3 14.6 16 221-236 161-176 (190)
237 PF12761 End3: Actin cytoskele 52.5 1.8E+02 0.0038 27.7 10.3 25 346-370 97-121 (195)
238 PF05335 DUF745: Protein of un 52.5 2.1E+02 0.0046 27.2 16.9 67 202-268 106-172 (188)
239 KOG0243 Kinesin-like protein [ 52.4 5.1E+02 0.011 31.5 43.0 11 304-315 374-384 (1041)
240 PRK10246 exonuclease subunit S 52.3 5.6E+02 0.012 31.9 79.2 28 125-152 181-208 (1047)
241 PF05266 DUF724: Protein of un 52.0 2.2E+02 0.0048 27.2 13.4 18 674-691 161-178 (190)
242 PF06810 Phage_GP20: Phage min 50.9 2E+02 0.0044 26.4 10.8 9 715-723 120-128 (155)
243 PRK02793 phi X174 lysis protei 50.6 98 0.0021 24.2 7.1 15 708-722 40-54 (72)
244 PF15254 CCDC14: Coiled-coil d 50.2 4.7E+02 0.01 30.5 25.5 45 623-667 501-545 (861)
245 KOG2196 Nuclear porin [Nuclear 50.1 2.6E+02 0.0056 27.5 16.6 17 709-725 231-247 (254)
246 PRK09841 cryptic autophosphory 49.9 5.1E+02 0.011 30.7 17.7 27 347-373 269-295 (726)
247 PF14073 Cep57_CLD: Centrosome 49.9 2.2E+02 0.0048 26.6 20.7 15 578-592 68-82 (178)
248 KOG0243 Kinesin-like protein [ 49.7 5.6E+02 0.012 31.2 45.2 9 75-83 111-119 (1041)
249 TIGR02231 conserved hypothetic 49.6 2.1E+02 0.0046 32.3 12.7 38 647-684 127-164 (525)
250 PF02994 Transposase_22: L1 tr 49.2 61 0.0013 34.7 7.8 40 703-744 289-328 (370)
251 PF14992 TMCO5: TMCO5 family 49.0 3E+02 0.0065 27.9 16.8 33 440-472 109-141 (280)
252 KOG4807 F-actin binding protei 47.6 3.6E+02 0.0078 28.3 29.5 80 648-727 509-588 (593)
253 PRK00295 hypothetical protein; 46.5 1.4E+02 0.0029 23.1 7.9 19 399-417 31-49 (68)
254 TIGR03752 conj_TIGR03752 integ 46.3 2.7E+02 0.0059 30.5 11.8 15 403-417 118-132 (472)
255 PF02994 Transposase_22: L1 tr 45.9 69 0.0015 34.3 7.6 36 206-241 145-180 (370)
256 PF05278 PEARLI-4: Arabidopsis 45.8 3.3E+02 0.0072 27.4 14.4 24 56-79 95-118 (269)
257 PF02403 Seryl_tRNA_N: Seryl-t 45.6 1.9E+02 0.0041 24.5 9.9 30 399-428 34-63 (108)
258 PRK00846 hypothetical protein; 45.4 1.5E+02 0.0033 23.5 7.9 24 395-418 35-58 (77)
259 COG3352 FlaC Putative archaeal 45.3 1.2E+02 0.0026 27.3 7.5 69 656-727 70-138 (157)
260 KOG4460 Nuclear pore complex, 44.8 4.8E+02 0.01 29.0 18.0 8 533-540 674-681 (741)
261 PF10805 DUF2730: Protein of u 43.7 2E+02 0.0044 24.4 9.6 25 389-413 67-91 (106)
262 PF06120 Phage_HK97_TLTM: Tail 43.5 3.9E+02 0.0084 27.6 18.7 20 398-417 85-104 (301)
263 PF08581 Tup_N: Tup N-terminal 43.4 1.7E+02 0.0037 23.4 11.2 36 445-480 9-44 (79)
264 PF08172 CASP_C: CASP C termin 42.9 3.6E+02 0.0078 27.0 12.7 43 615-657 92-134 (248)
265 PF12761 End3: Actin cytoskele 42.5 2E+02 0.0044 27.4 9.0 18 443-460 99-116 (195)
266 PRK12704 phosphodiesterase; Pr 42.2 5.5E+02 0.012 29.0 15.9 9 717-725 496-504 (520)
267 KOG3647 Predicted coiled-coil 41.8 3.7E+02 0.0079 26.8 13.8 105 572-676 110-214 (338)
268 PF10458 Val_tRNA-synt_C: Valy 41.4 1.6E+02 0.0034 22.5 7.0 26 528-553 4-29 (66)
269 PF15254 CCDC14: Coiled-coil d 41.1 6.5E+02 0.014 29.4 25.9 34 441-474 428-461 (861)
270 PF01920 Prefoldin_2: Prefoldi 40.5 2.2E+02 0.0047 23.8 12.3 28 524-551 65-92 (106)
271 PF04100 Vps53_N: Vps53-like, 40.3 5E+02 0.011 27.9 18.3 21 530-550 20-40 (383)
272 KOG4438 Centromere-associated 39.8 5.1E+02 0.011 27.9 38.2 24 440-463 173-196 (446)
273 PF10205 KLRAQ: Predicted coil 39.0 2.4E+02 0.0051 23.8 10.9 47 379-425 25-71 (102)
274 KOG2010 Double stranded RNA bi 38.9 4.3E+02 0.0092 27.1 11.0 55 600-654 145-199 (405)
275 KOG0980 Actin-binding protein 38.6 7.4E+02 0.016 29.4 50.1 59 439-497 458-516 (980)
276 PF04899 MbeD_MobD: MbeD/MobD 37.8 1.9E+02 0.0042 22.5 9.1 43 559-601 20-62 (70)
277 PF06156 DUF972: Protein of un 37.4 2E+02 0.0043 24.5 7.5 33 635-667 13-45 (107)
278 COG2900 SlyX Uncharacterized p 37.1 2E+02 0.0043 22.4 6.7 20 647-666 11-30 (72)
279 PF14282 FlxA: FlxA-like prote 36.4 2.3E+02 0.0051 24.0 7.9 16 442-457 21-36 (106)
280 COG2900 SlyX Uncharacterized p 36.3 2.1E+02 0.0045 22.3 7.2 48 649-696 6-53 (72)
281 PF15035 Rootletin: Ciliary ro 36.3 3.8E+02 0.0082 25.4 19.3 34 464-497 84-117 (182)
282 PF09744 Jnk-SapK_ap_N: JNK_SA 36.0 3.5E+02 0.0076 24.9 15.4 17 150-166 51-67 (158)
283 PRK11519 tyrosine kinase; Prov 35.8 8.1E+02 0.017 29.0 18.5 26 348-373 270-295 (719)
284 KOG4809 Rab6 GTPase-interactin 35.4 6.7E+02 0.014 27.9 38.6 71 353-423 332-402 (654)
285 PLN02939 transferase, transfer 34.1 9.5E+02 0.021 29.3 29.6 17 562-578 266-282 (977)
286 PHA03011 hypothetical protein; 33.6 2.8E+02 0.006 22.9 7.9 46 639-684 66-111 (120)
287 KOG2077 JNK/SAPK-associated pr 33.5 7.2E+02 0.016 27.8 14.8 70 137-206 303-372 (832)
288 PF06810 Phage_GP20: Phage min 32.6 4E+02 0.0086 24.5 10.4 11 327-337 126-136 (155)
289 PF02050 FliJ: Flagellar FliJ 32.2 3.1E+02 0.0068 23.1 17.2 27 136-162 6-32 (123)
290 PF10212 TTKRSYEDQ: Predicted 32.0 7.5E+02 0.016 27.5 24.4 185 365-555 294-514 (518)
291 PF15450 DUF4631: Domain of un 31.9 7.5E+02 0.016 27.5 63.3 23 135-157 20-42 (531)
292 COG1730 GIM5 Predicted prefold 31.7 4E+02 0.0086 24.2 13.4 40 624-663 95-134 (145)
293 KOG3809 Microtubule-binding pr 31.2 6.9E+02 0.015 26.9 12.7 24 24-47 57-80 (583)
294 KOG4807 F-actin binding protei 31.2 6.5E+02 0.014 26.5 29.2 32 398-429 295-326 (593)
295 PF15018 InaF-motif: TRP-inter 30.7 21 0.00046 23.8 0.5 11 10-20 28-38 (38)
296 PRK11546 zraP zinc resistance 30.7 2.8E+02 0.0061 25.0 7.6 70 122-194 44-113 (143)
297 PRK10803 tol-pal system protei 30.4 3.8E+02 0.0083 27.1 9.8 27 581-607 61-87 (263)
298 KOG0982 Centrosomal protein Nu 30.3 7.2E+02 0.016 26.8 31.9 11 530-540 376-386 (502)
299 PF14257 DUF4349: Domain of un 29.8 2.3E+02 0.0049 28.6 8.1 30 440-469 162-191 (262)
300 PF10234 Cluap1: Clusterin-ass 29.1 6.2E+02 0.013 25.6 18.6 15 56-70 49-63 (267)
301 PF05335 DUF745: Protein of un 28.9 5.2E+02 0.011 24.6 17.9 104 149-252 67-170 (188)
302 KOG0982 Centrosomal protein Nu 28.7 7.6E+02 0.017 26.6 31.4 24 525-548 407-430 (502)
303 PF06825 HSBP1: Heat shock fac 28.7 1.1E+02 0.0024 22.3 3.9 38 688-725 12-49 (54)
304 PRK13729 conjugal transfer pil 28.4 2.8E+02 0.006 30.5 8.5 16 323-342 313-328 (475)
305 PF15294 Leu_zip: Leucine zipp 28.1 6.5E+02 0.014 25.6 27.6 45 445-489 130-174 (278)
306 PRK14011 prefoldin subunit alp 27.2 4.7E+02 0.01 23.7 12.7 32 652-683 89-120 (144)
307 PF07851 TMPIT: TMPIT-like pro 26.8 7.6E+02 0.016 25.9 12.2 6 266-271 119-124 (330)
308 KOG0979 Structural maintenance 26.7 1.2E+03 0.026 28.3 62.6 69 662-730 860-932 (1072)
309 PF05064 Nsp1_C: Nsp1-like C-t 26.6 56 0.0012 28.3 2.6 43 633-675 60-102 (116)
310 PF06120 Phage_HK97_TLTM: Tail 26.6 7.3E+02 0.016 25.6 20.3 29 712-740 254-282 (301)
311 TIGR02449 conserved hypothetic 26.3 3E+02 0.0065 21.1 8.9 26 224-249 26-51 (65)
312 TIGR01010 BexC_CtrB_KpsE polys 26.0 8.1E+02 0.018 26.0 19.1 22 351-372 176-197 (362)
313 PF03915 AIP3: Actin interacti 25.9 8.9E+02 0.019 26.4 17.5 12 462-473 152-163 (424)
314 TIGR02971 heterocyst_DevB ABC 25.9 7.6E+02 0.017 25.6 19.9 21 439-459 134-154 (327)
315 PF04871 Uso1_p115_C: Uso1 / p 25.1 5E+02 0.011 23.2 14.2 14 711-724 98-111 (136)
316 PF11570 E2R135: Coiled-coil r 24.5 4.9E+02 0.011 22.9 14.4 110 127-236 7-136 (136)
317 cd07672 F-BAR_PSTPIP2 The F-BA 24.2 7.2E+02 0.016 24.7 20.7 9 263-271 184-192 (240)
318 TIGR02894 DNA_bind_RsfA transc 23.9 5.8E+02 0.012 23.5 8.8 12 38-49 17-28 (161)
319 PF13094 CENP-Q: CENP-Q, a CEN 23.8 5.7E+02 0.012 23.4 9.9 59 130-188 22-80 (160)
320 PF13094 CENP-Q: CENP-Q, a CEN 23.6 5.7E+02 0.012 23.4 9.3 28 353-380 28-55 (160)
321 PF07536 HWE_HK: HWE histidine 23.0 1.3E+02 0.0029 24.1 4.0 48 32-82 1-50 (83)
322 KOG3564 GTPase-activating prot 22.9 8.7E+02 0.019 26.6 10.7 41 623-663 63-103 (604)
323 PF05531 NPV_P10: Nucleopolyhe 22.7 3.9E+02 0.0084 21.1 7.3 15 449-463 13-27 (75)
324 PF07798 DUF1640: Protein of u 22.7 6.4E+02 0.014 23.6 19.6 16 598-613 141-156 (177)
325 PRK13182 racA polar chromosome 22.6 6.2E+02 0.013 23.8 8.8 21 473-493 123-143 (175)
326 PF08232 Striatin: Striatin fa 22.0 5.7E+02 0.012 22.8 9.6 40 627-666 29-68 (134)
327 PF05064 Nsp1_C: Nsp1-like C-t 21.5 1.5E+02 0.0033 25.6 4.3 32 627-658 68-99 (116)
328 PF01519 DUF16: Protein of unk 21.3 5E+02 0.011 21.8 8.2 12 639-650 62-73 (102)
329 PF10805 DUF2730: Protein of u 21.3 5.1E+02 0.011 22.0 12.0 26 394-419 65-90 (106)
330 TIGR03319 YmdA_YtgF conserved 20.9 1.2E+03 0.026 26.2 18.5 6 719-724 492-497 (514)
331 PRK15178 Vi polysaccharide exp 20.4 1.1E+03 0.025 25.7 19.2 51 409-463 287-337 (434)
No 1
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=99.97 E-value=9.2e-33 Score=205.59 Aligned_cols=68 Identities=28% Similarity=0.555 Sum_probs=66.8
Q ss_pred cccccccCCCCCchhhhhhHHHHHHHHHHHHHhhccCch--hhhccC----hhhHHHHHHHHHHHHHHHHHHHh
Q 047747 11 KSFFGSYIDPEKDEQLKGNKIEIEDKFKKILKLVQDKDL--QEKDGI----KEPLVELIEGFHSQYQSLYAQYD 78 (748)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~e~~~~~~~l~~~~~ 78 (748)
||||+|||+|++|+||++||+|||.+||.||+||++||| |+||+| ||+|+.+|++||++|++|+++||
T Consensus 1 swww~sHi~~~~skWL~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD 74 (74)
T PF07765_consen 1 SWWWDSHISPKQSKWLQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD 74 (74)
T ss_pred ChhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999999999999999998 899999 99999999999999999999997
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.96 E-value=1.3e-23 Score=254.37 Aligned_cols=542 Identities=23% Similarity=0.297 Sum_probs=287.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 047747 136 ELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEA 215 (748)
Q Consensus 136 ~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~ 215 (748)
.+.....++..+...+..+..+.+.+...+......+..+..++..+..++..+...+..+...+..+...++.+...+.
T Consensus 384 ~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 463 (1163)
T COG1196 384 ELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK 463 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444444444444444444444455555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HH--------HHHHHHHhHHHHHhhhhhH-----
Q 047747 216 ELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQE--AEEII---RN--------LKLEAESLNNDMLEGLAVN----- 277 (748)
Q Consensus 216 ~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~~~~--~~~~l---~~--------~~~el~~~~~~~~~ai~~~----- 277 (748)
.++..+..+...+..+...+......+..+...... ++..+ .. .-.++++|+++|.+||++|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Gv~G~v~~li~v~~~y~~Aie~alG~~l 543 (1163)
T COG1196 464 ELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALEAALGNRL 543 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCCCccchHHHhcCcChHHHHHHHHHccccc
Confidence 555555555555555555555555544443332211 11111 11 1239999999999999885
Q ss_pred ---------------HHHHHhhhHhhhHHHHHHHHHHHhHh---------------------------------hhhhhh
Q 047747 278 ---------------AELKQKLSIAGELEAELNHRLEDISR---------------------------------DKDNLI 309 (748)
Q Consensus 278 ---------------~~Lk~~~~~~gr~t~~~~l~L~~i~~---------------------------------l~~~lv 309 (748)
.|||+.+ +||+| |+||+.|++ ||+|+|
T Consensus 544 ~~vVV~~~~~a~~~i~~lk~~~--~gr~t---flpl~~i~~~~~~~~~~~~g~~~~a~dli~~d~~~~~~~~~~l~~t~I 618 (1163)
T COG1196 544 QAVVVENEEVAKKAIEFLKENK--AGRAT---FLPLDRIKPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLV 618 (1163)
T ss_pred CCeeeCChHHHHHHHHHHhhcC--CCccc---cCchhhhccccccccccccchhHHHHHHhcCCHHHHHHHHHHhCCeEE
Confidence 8999999 99999 999999882 899999
Q ss_pred HH-HHHHHHHhH---hhHHHHHHHHhhHHhHHHHHHH-hhH------------HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 047747 310 ME-KETVLRRVE---EGEKIAEDLRNSADQLNEEKLV-LGK------------ELETLRGKISNMEQQLESSKQEVSDLS 372 (748)
Q Consensus 310 ~e-l~~a~~~~~---~~~~~Vt~L~~l~g~l~~~~g~-~~~------------ei~~l~~~l~~le~~l~~~~~~l~~l~ 372 (748)
|+ ++.|.+... .++++|| ++|+++.++|+ ||+ ++..+..++..+...+..+...+..+.
T Consensus 619 v~~l~~A~~l~~~~~~~~riVT----l~G~~~~~~G~~tGG~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 694 (1163)
T COG1196 619 VDDLEQARRLARKLRIKYRIVT----LDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLK 694 (1163)
T ss_pred ecCHHHHHHHHHhcCCCceEEe----cCCcEEeCCeeeecCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999966663 3689999 99999999999 876 334455555666666666556666665
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccchHHHHHHHHHHHhhH
Q 047747 373 QNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGL 452 (748)
Q Consensus 373 ~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~~~~~~~~~~~~~~~~~e~el~~l 452 (748)
..+..+...+..++..+..+..++..+...+..+..+...+...+..+..++..+.. ....+...+..++..+..+
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~~ 770 (1163)
T COG1196 695 NELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE----ELEELQERLEELEEELESL 770 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555544443 3333333333333333333
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhHhHHHHHHHHHHHHHH
Q 047747 453 ELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQIND 532 (748)
Q Consensus 453 ~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l~~~l~~~~~~~~~~i~~l~~~i~~ 532 (748)
......+...+..+..........+..+...+...+..+..+...+.........+...+ ..+..++..+...+..
T Consensus 771 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei----~~l~~~~~~~~~~~~~ 846 (1163)
T COG1196 771 EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI----EELEEEIEELEEKLDE 846 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 333333333333333322333333333333333333333333333222221111111111 1112222233333333
Q ss_pred HHHhHhhHHHHHHHHHHHhhhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 533 LLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIV 612 (748)
Q Consensus 533 l~~el~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~ 612 (748)
+...+..+...+..+..++... ...+..+...+..+......+...+..+...+..+...+..+...+..+.....
T Consensus 847 l~~~~~~~~~~~~~~~~~l~~~----~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 922 (1163)
T COG1196 847 LEEELEELEKELEELKEELEEL----EAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLE 922 (1163)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333332222222 223333333333333333444444444444444433333333333333322222
Q ss_pred hHHHHHHHHHHHH--------H-HHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHH
Q 047747 613 NKTEVQQKILEEI--------E-SLTARIKSLELEVASLGN-------QKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFE 676 (748)
Q Consensus 613 ~~~~~~~~~~~~~--------~-~l~~~~~~l~~~l~~l~~-------e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~ 676 (748)
.+...+......+ . .+...+..++..+..+++ +|..+.+++.++..++.++......+...|..
T Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~ 1002 (1163)
T COG1196 923 RLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEE 1002 (1163)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221111111111 1 567778888888888876 88889999999999999999999999999988
Q ss_pred HHHHHHHH-HHHhHHHHHHHhhh
Q 047747 677 LEKTLTER-GSELSSLQEKHINV 698 (748)
Q Consensus 677 le~~~~~~-~~~l~~l~~~l~~~ 698 (748)
++...... ...|..+...|...
T Consensus 1003 ~d~~~~~~f~~~f~~In~~F~~i 1025 (1163)
T COG1196 1003 LDKEKRERFKETFDKINENFSEI 1025 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88766555 77777777777654
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.96 E-value=1.3e-22 Score=251.96 Aligned_cols=544 Identities=22% Similarity=0.278 Sum_probs=267.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 047747 137 LDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAE 216 (748)
Q Consensus 137 l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~ 216 (748)
......++..+...+..+......+...+......+..+...+..+...+..+...+..+...+..+...+..+......
T Consensus 387 ~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 466 (1164)
T TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH--------HHHHHHhHHHHHhhhhhH--
Q 047747 217 LNREVSDMKRQLTARSEEKEALNLEYQTALSKI---------QEAEEIIRNL--------KLEAESLNNDMLEGLAVN-- 277 (748)
Q Consensus 217 l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~~---------~~~~~~l~~~--------~~el~~~~~~~~~ai~~~-- 277 (748)
+...+..+...+..+...+..+..++..+.... ..++..+... -.+++.|++.|..||+++
T Consensus 467 ~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~g~~g~l~dli~v~~~y~~Aie~~lg 546 (1164)
T TIGR02169 467 YEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAG 546 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhcCCCCceecHHHhcCcCHHHHHHHHHHhh
Confidence 444555555555555555544444443333221 1222333221 239999999999999884
Q ss_pred ------------------HHHHHhhhHhhhHHHHHHHHHHHhHh----------------------------------hh
Q 047747 278 ------------------AELKQKLSIAGELEAELNHRLEDISR----------------------------------DK 305 (748)
Q Consensus 278 ------------------~~Lk~~~~~~gr~t~~~~l~L~~i~~----------------------------------l~ 305 (748)
.||+.++ .||+| |+||+.|++ ||
T Consensus 547 ~~l~~ivv~~~~~a~~~i~~l~~~~--~gr~t---flpl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~lg 621 (1164)
T TIGR02169 547 NRLNNVVVEDDAVAKEAIELLKRRK--AGRAT---FLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFG 621 (1164)
T ss_pred hhhCCEEECCHHHHHHHHHHHHhcC--CCCee---eccHhhcCCCCCCcccccCCCchHHHHHHccCcHHHHHHHHHHCC
Confidence 7999998 99999 999986530 88
Q ss_pred hhhhHH-HHHHHHHhHhhHHHHHHHHhhHHhHHHHHHH-hhHHHH-------HH--HHHHhHHHHHHHHHHHHHHHHHHh
Q 047747 306 DNLIME-KETVLRRVEEGEKIAEDLRNSADQLNEEKLV-LGKELE-------TL--RGKISNMEQQLESSKQEVSDLSQN 374 (748)
Q Consensus 306 ~~lv~e-l~~a~~~~~~~~~~Vt~L~~l~g~l~~~~g~-~~~ei~-------~l--~~~l~~le~~l~~~~~~l~~l~~~ 374 (748)
+|+||+ ++.|...+. ++++|| ++|+++.++|+ +||... .. ...+..+..++..+...+..+...
T Consensus 622 ~~~v~~~l~~a~~~~~-~~~~vT----ldG~~~~~~G~~tgG~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~l~~~ 696 (1164)
T TIGR02169 622 DTLVVEDIEAARRLMG-KYRMVT----LEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSE 696 (1164)
T ss_pred CeEEEcCHHHHHHHhc-CCcEEE----eCceeEcCCcCccCCCCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888998 999966555 778999 99999999988 765210 00 233444444455544444444444
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccchHHHHHHHHHHHhhHHH
Q 047747 375 LTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLEL 454 (748)
Q Consensus 375 l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~~~~~~~~~~~~~~~~~e~el~~l~~ 454 (748)
+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+.. .+......+..+...+..+..
T Consensus 697 ~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~----~~~~~~~el~~l~~~i~~l~~ 772 (1164)
T TIGR02169 697 LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ----EIENVKSELKELEARIEELEE 772 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443443333333333333333333333333333333222222 222222222233333333333
Q ss_pred HHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh---HhHHHHHHHH
Q 047747 455 ELESLQAHNRDMVVQI-----DSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANE---SESLSRIENL 526 (748)
Q Consensus 455 ~~~~l~~~l~~l~~~l-----~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l~~~l~~~~---~~~~~~i~~l 526 (748)
.+..+...+..+...+ ......+..+...+..+...+..+...+..+..++..+...+.... ..+...+..+
T Consensus 773 ~i~~l~~el~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~~~~~ 852 (1164)
T TIGR02169 773 DLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333332222211 1111222233333333333333333333333322222222221111 1112222222
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHhhhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 527 TAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQI 606 (748)
Q Consensus 527 ~~~i~~l~~el~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 606 (748)
...+..+...+..+...+..+...+..+ ...+..+...+..+...+..+...+..+...+......+..+...+..
T Consensus 853 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l----~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~ 928 (1164)
T TIGR02169 853 EKEIENLNGKKEELEEELEELEAALRDL----ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEA 928 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222333333333332222222 233333344444444444444444444444444444444444444444
Q ss_pred HHHHHHhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 047747 607 LKEEIVNKTEVQQKI------LEEIESLTARIKSLELEVASLGN-------QKSDLEEQMRLKIEEGFHLTEEKLGLLDG 673 (748)
Q Consensus 607 l~~~l~~~~~~~~~~------~~~~~~l~~~~~~l~~~l~~l~~-------e~~~l~~~~~~le~e~~~l~~~~~~l~~~ 673 (748)
+...+..+...+... ......+...+..+...+..+++ +|..+.+++.++..++.++......+...
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~ 1008 (1164)
T TIGR02169 929 LEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILER 1008 (1164)
T ss_pred HHHHHHHhhhhhhhhhhcccccCCHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443332221110 11235666777777777777764 78889999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHhHHHHHHHhhh
Q 047747 674 IFELEKTLTER-GSELSSLQEKHINV 698 (748)
Q Consensus 674 i~~le~~~~~~-~~~l~~l~~~l~~~ 698 (748)
+..++..+... ...|..+...|...
T Consensus 1009 i~~l~~~~~~~f~~~f~~~~~~f~~~ 1034 (1164)
T TIGR02169 1009 IEEYEKKKREVFMEAFEAINENFNEI 1034 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998776655 66677777766554
No 4
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.6e-21 Score=215.55 Aligned_cols=284 Identities=16% Similarity=0.211 Sum_probs=212.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 047747 131 DGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAA 210 (748)
Q Consensus 131 ~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~ 210 (748)
.+++.+....+.++..+..++.....+.+....++..+........+.+..++..+......+.+....+..+...+..+
T Consensus 475 ~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~ 554 (1293)
T KOG0996|consen 475 EGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSL 554 (1293)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34455566666666667777777777777777777777777777777777788888887777777888888888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH---H-------H--HHHHhHHHHHh
Q 047747 211 GKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQ------EAEEIIRNL---K-------L--EAESLNNDMLE 272 (748)
Q Consensus 211 ~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~~~------~~~~~l~~~---~-------~--el~~~~~~~~~ 272 (748)
..++.+...++..+......+...+..+..++.++++... .....|.++ | . |||.++++|..
T Consensus 555 k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDv 634 (1293)
T KOG0996|consen 555 KQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDV 634 (1293)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCCccccccccccccchHHHH
Confidence 8888888888888888888888888888888877776422 233333332 1 1 99999999999
Q ss_pred hhhhH-------------------HHHHHhhhHhhhHHHHHHHHHHHhHh------------------------------
Q 047747 273 GLAVN-------------------AELKQKLSIAGELEAELNHRLEDISR------------------------------ 303 (748)
Q Consensus 273 ai~~~-------------------~~Lk~~~~~~gr~t~~~~l~L~~i~~------------------------------ 303 (748)
||.++ .||+..+ +||+| |++|+.|..
T Consensus 635 AIsTac~~LdyiVVdt~e~aq~cI~fl~~~n--LgraT---Fi~LDki~~~~~~l~~i~tpenvPRLfDLv~~~d~~~r~ 709 (1293)
T KOG0996|consen 635 AISTACARLDYIVVDTIETAQECINFLKKNN--LGRAT---FIILDKIKDHQKKLAPITTPENVPRLFDLVKCKDEKFRP 709 (1293)
T ss_pred HHHHhccccceEEeccHHHHHHHHHHHHHcC--CCcee---EEehHhhhhhhhccCCCCCCCCcchHhhhhccCCHHHHH
Confidence 99885 8999999 99999 999999982
Q ss_pred -----hhhhhhHH-HHHHHHHhHh---hHHHHHHHHhhHHhHHHHHHH-hhH-----------HH---HHHHHHHhHHHH
Q 047747 304 -----DKDNLIME-KETVLRRVEE---GEKIAEDLRNSADQLNEEKLV-LGK-----------EL---ETLRGKISNMEQ 359 (748)
Q Consensus 304 -----l~~~lv~e-l~~a~~~~~~---~~~~Vt~L~~l~g~l~~~~g~-~~~-----------ei---~~l~~~l~~le~ 359 (748)
+++||||+ ++.|.+++++ ++|+|| |+|.+++++|+ ||+ .+ ..-...+..++.
T Consensus 710 aFYfaLrdtLV~d~LeQAtRiaygk~rr~RVvT----L~G~lIe~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~ 785 (1293)
T KOG0996|consen 710 AFYFALRDTLVADNLEQATRIAYGKDRRWRVVT----LDGSLIEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLER 785 (1293)
T ss_pred HHHHHHhhhhhhcCHHHHHHHhhcCCCceEEEE----ecceeecccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHH
Confidence 99999999 9999888844 488999 99999999999 753 11 112235566666
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 360 QLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKERE 423 (748)
Q Consensus 360 ~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e 423 (748)
.+......+..+...+..+++.+..++..+..+.+.+..+...++.+...++.+..++.+++..
T Consensus 786 ~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 786 ALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666667777777777777777777777777777777777776665
No 5
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=5.4e-17 Score=176.20 Aligned_cols=277 Identities=19% Similarity=0.277 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHH
Q 047747 134 KQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKI 213 (748)
Q Consensus 134 k~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~ 213 (748)
+.++..+..-+...+.....++.+++.+...+....+.+..+...|.....++..+... +..++..++.+...
T Consensus 396 r~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~-------~~~~k~~~del~~~ 468 (1200)
T KOG0964|consen 396 RSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAE-------NTELKRELDELQDK 468 (1200)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 34445555556666666667777777777777777777777777766665555555544 45555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH------------HHHHHHhHHHHHhhhhhH---
Q 047747 214 EAELNREVSDMKRQLTARSEEKEALNLEYQTALSK-IQEAEEIIRNL------------KLEAESLNNDMLEGLAVN--- 277 (748)
Q Consensus 214 ~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~-~~~~~~~l~~~------------~~el~~~~~~~~~ai~~~--- 277 (748)
...++.+-..++..+..+...+...+..+..+..+ +..+...+... ..+|+.||++|.+|+++.
T Consensus 469 Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGN 548 (1200)
T KOG0964|consen 469 RKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGN 548 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHHhhhccc
Confidence 66666667777777777777777777777666554 44444444331 239999999999999882
Q ss_pred -----------------HHHHHhhhHhhhHHHHHHHHHHHhHh-------------------------------hhhhhh
Q 047747 278 -----------------AELKQKLSIAGELEAELNHRLEDISR-------------------------------DKDNLI 309 (748)
Q Consensus 278 -----------------~~Lk~~~~~~gr~t~~~~l~L~~i~~-------------------------------l~~~lv 309 (748)
..+..-+ .||+| |+||+.|++ ||+|+|
T Consensus 549 sLF~iVVdndevATkIl~~~n~m~--~GrVT---F~PLNrl~~r~v~yp~~sdaiPli~kl~y~p~fdka~k~Vfgktiv 623 (1200)
T KOG0964|consen 549 SLFNIVVDNDEVATKILRKLNKMK--GGRVT---FMPLNRLKARDVEYPKDSDAIPLISKLRYEPQFDKALKHVFGKTIV 623 (1200)
T ss_pred ceEEEEecccHHHHHHHHHHHhcc--CCeeE---EeecccCchhhccCCCCCCccchHHHhCcchhhHHHHHHHhCceEE
Confidence 4444555 89999 999999985 999999
Q ss_pred HH-HHHHHHHh-HhhHHHHHHHHhhHHhHHHHHHH-hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 047747 310 ME-KETVLRRV-EEGEKIAEDLRNSADQLNEEKLV-LGKELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLT 386 (748)
Q Consensus 310 ~e-l~~a~~~~-~~~~~~Vt~L~~l~g~l~~~~g~-~~~ei~~l~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~ 386 (748)
|. ++.|.+.+ .+...+|| ++|+.+...|+ ||+-+..-...+. +-..+...+.++..+...+..+...+.+..
T Consensus 624 crdl~qa~~~ak~~~ln~IT----l~GDqvskkG~lTgGy~D~krsrLe-~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~ 698 (1200)
T KOG0964|consen 624 CRDLEQALRLAKKHELNCIT----LSGDQVSKKGVLTGGYEDQKRSRLE-LLKNVNESRSELKELQESLDEVRNEIEDID 698 (1200)
T ss_pred eccHHHHHHHHHhcCCCeEE----eccceecccCCccccchhhhhhHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 99997777 55788999 99999999999 9876655322222 223344444444445444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 047747 387 LKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSL 427 (748)
Q Consensus 387 ~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l 427 (748)
+++..+.+.++.++............+...+..+..+...+
T Consensus 699 ~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v 739 (1200)
T KOG0964|consen 699 QKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRV 739 (1200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44444444444444444444444444444444444433333
No 6
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=7.5e-17 Score=176.00 Aligned_cols=277 Identities=14% Similarity=0.160 Sum_probs=171.8
Q ss_pred hhhhhhHHHHHHHHHHHHHhhccCch---hhhccChhhHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccCCCCCCCCCCC
Q 047747 24 EQLKGNKIEIEDKFKKILKLVQDKDL---QEKDGIKEPLVELIEGFHSQYQSLYAQYDNLRGELKKKIHGKKENETYSSS 100 (748)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (748)
.|..+||.+-..+++.|-+=|.++-- +++. .+......|..+++.+...+.-+....... ++.+.+
T Consensus 318 ~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~--------~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~---eslt~G 386 (1174)
T KOG0933|consen 318 NLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEK--------AMAKVEEGYEKLKEAFQEDSKLLEKAEELV---ESLTAG 386 (1174)
T ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHH--------HHhhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHhcc
Confidence 69999999999999999998888753 1222 223334455555555555554443332111 000111
Q ss_pred CCCCCCCCCccccccCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 101 SSDSDSDSDHSSKNKSNKNGELESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIR 180 (748)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~ 180 (748)
.|+.|. ..+ .+...+...+..+..+..++...+-++..+..+......+..............+.
T Consensus 387 ~Ss~~~-----------~e~----~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld 451 (1174)
T KOG0933|consen 387 LSSNED-----------EEK----TLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELD 451 (1174)
T ss_pred cccCcc-----------chh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHH
Confidence 111111 111 26677778888888888888888888888888888888777777777777777777
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 047747 181 NLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEII---- 256 (748)
Q Consensus 181 ~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~~~~~~~~l---- 256 (748)
.++..+..+...+..+..+.... +.+......+...+..+...+..+...+...... |..++..+
T Consensus 452 ~~q~eve~l~~~l~~l~~~~~~~----e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~-------Y~dP~~nfdrs~ 520 (1174)
T KOG0933|consen 452 ALQNEVEKLKKRLQSLGYKIGQE----EALKQRRAKLHEDIGRLKDELDRLLARLANYEFT-------YQDPEPNFDRSK 520 (1174)
T ss_pred HHHHHHHHHHHHHHhcCCCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-------cCCCCccchHHH
Confidence 77777777766666666554332 2333333333333333333333333333222222 33333333
Q ss_pred -HHHHHHHHHhHH-HHHhhhhhH----------------HHHHHhhhHhhhHHHHHHHHHHHhHh---------------
Q 047747 257 -RNLKLEAESLNN-DMLEGLAVN----------------AELKQKLSIAGELEAELNHRLEDISR--------------- 303 (748)
Q Consensus 257 -~~~~~el~~~~~-~~~~ai~~~----------------~~Lk~~~~~~gr~t~~~~l~L~~i~~--------------- 303 (748)
..+...|+.|++ .|.+|++++ ..|-+.....-|+| .+||++|..
T Consensus 521 V~G~Va~Li~vkd~~~~tAle~~aGgrLynvVv~te~tgkqLLq~g~l~rRvT---iIPLnKI~s~~~s~~v~~~ak~v~ 597 (1174)
T KOG0933|consen 521 VKGLVAKLIKVKDRSYATALETTAGGRLYNVVVDTEDTGKQLLQRGNLRRRVT---IIPLNKIQSFVLSPNVLQAAKNVG 597 (1174)
T ss_pred HHHHHHHHheeCcchHHHHHHHHhcCcceeEEeechHHHHHHhhcccccceeE---EEechhhhhccCCHhHHHHHHHhc
Confidence 334558888875 588888772 33333222256788 889998874
Q ss_pred ------------------------hhhhhhHH-HHHHHHHhHh---hHHHHHHHHhhHHhHHHHHHH-hh
Q 047747 304 ------------------------DKDNLIME-KETVLRRVEE---GEKIAEDLRNSADQLNEEKLV-LG 344 (748)
Q Consensus 304 ------------------------l~~~lv~e-l~~a~~~~~~---~~~~Vt~L~~l~g~l~~~~g~-~~ 344 (748)
||.|+||+ ++.|....++ +.+.|| ++|+++.|+|. ||
T Consensus 598 ~~~v~~al~Li~yd~~l~~amefvFG~tlVc~~~d~AKkVaf~~~i~~rsVT----l~GDV~dP~GtlTG 663 (1174)
T KOG0933|consen 598 NDNVELALSLIGYDDELKKAMEFVFGSTLVCDSLDVAKKVAFDPKIRTRSVT----LEGDVYDPSGTLTG 663 (1174)
T ss_pred CchHHHHHHHhcCCHHHHHHHHHHhCceEEecCHHHHHHhhcccccccceee----ecCceeCCCCcccC
Confidence 99999999 9999666644 456699 99999999999 76
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.85 E-value=1.1e-15 Score=190.74 Aligned_cols=348 Identities=21% Similarity=0.270 Sum_probs=161.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047747 347 LETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSS 426 (748)
Q Consensus 347 i~~l~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~ 426 (748)
+..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+..++..
T Consensus 672 ~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~ 751 (1179)
T TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751 (1179)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555444445555555555555555555444444444
Q ss_pred HHhhhhhhccchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 047747 427 LVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELT 506 (748)
Q Consensus 427 l~~~~~~~~~~~~~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~ 506 (748)
+.. ........+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+......+.
T Consensus 752 ~~~----~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 827 (1179)
T TIGR02168 752 LSK----ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827 (1179)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 3333333333333333333333333333333333333333333333333333333333333333333332222
Q ss_pred HHHHHHhhhhH---hHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhhh---hhHHHHHhhhHHHHHHHHHHHHHHH
Q 047747 507 TTIMKLEANES---ESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKD---DEASTQVKGLMNQVDTLQQELESLR 580 (748)
Q Consensus 507 ~l~~~l~~~~~---~~~~~i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l~---~~~~~~~~~l~~~l~~l~~~~~~l~ 580 (748)
.+...+..... .+...+..+...+..+...+..+...+..+...+..+. ..+...+..+...+..+...+..+.
T Consensus 828 ~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 907 (1179)
T TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221111 11222222222333333333333333333333332222 1123333344444444444444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHH----HHHHHHHHHHHHHHhhhhHHHH---
Q 047747 581 GQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKI----LEEIES----LTARIKSLELEVASLGNQKSDL--- 649 (748)
Q Consensus 581 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~----~~~~~~----l~~~~~~l~~~l~~l~~e~~~l--- 649 (748)
..+..+...+..+...+..+...+..+...+......+... ...... +...+..+...+..+++.+.++
T Consensus 908 ~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lg~aiee~~~~ 987 (1179)
T TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPV 987 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHhhccccccCHHHHHHHHHHHHHHHHHcCCC
Confidence 44444444444444444444444444444444321111100 000111 2334556666666666644443
Q ss_pred H----HHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHH----HHHhHHHHHHHhhh
Q 047747 650 E----EQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTER----GSELSSLQEKHINV 698 (748)
Q Consensus 650 ~----~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~----~~~l~~l~~~l~~~ 698 (748)
. +++.++..++.+|...+..+...|..++..+..+ ...|..+...|...
T Consensus 988 ~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~ 1044 (1179)
T TIGR02168 988 NLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNEN 1044 (1179)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 8999999999999999999999999999888766 34566666666543
No 8
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.8e-16 Score=173.35 Aligned_cols=398 Identities=15% Similarity=0.139 Sum_probs=263.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 047747 124 SEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAEL 203 (748)
Q Consensus 124 ~~~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l 203 (748)
+.....|..|+++..... ...+..+..+...-+..+........+++..+..+...+..+......+...+..+
T Consensus 362 d~~~~ey~rlk~ea~~~~------~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~ 435 (1141)
T KOG0018|consen 362 DDQVEEYERLKEEACKEA------LEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSL 435 (1141)
T ss_pred hHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777655443 56667777777777777777888888888999999988888888888888888888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-------HHHHHHhH
Q 047747 204 NQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSK---------IQEAEEIIRNL-------KLEAESLN 267 (748)
Q Consensus 204 ~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~---------~~~~~~~l~~~-------~~el~~~~ 267 (748)
...+..+......+...+.....+...++.++.....++..+... ...++..|+.. .+|||.+.
T Consensus 436 ~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave~lKr~fPgv~GrviDLc~pt 515 (1141)
T KOG0018|consen 436 SRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRKQEAVEALKRLFPGVYGRVIDLCQPT 515 (1141)
T ss_pred HHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHhCCCccchhhhccccc
Confidence 888888888888888888888888888888888888888777665 33444444432 24999987
Q ss_pred -HHHHhhhhhH--------------------HHHHHhhhHhhhHHHHHHHHHHHhHh-----------------------
Q 047747 268 -NDMLEGLAVN--------------------AELKQKLSIAGELEAELNHRLEDISR----------------------- 303 (748)
Q Consensus 268 -~~~~~ai~~~--------------------~~Lk~~~~~~gr~t~~~~l~L~~i~~----------------------- 303 (748)
.+|..|+.++ .|||.++ +|..| |+||+.|..
T Consensus 516 ~kkyeiAvt~~Lgk~~daIiVdte~ta~~CI~ylKeqr--~~~~T---FlPld~i~v~~~~e~lr~~~g~rlv~Dvi~ye 590 (1141)
T KOG0018|consen 516 QKKYEIAVTVVLGKNMDAIIVDTEATARDCIQYLKEQR--LEPMT---FLPLDSIRVKPVNEKLRELGGVRLVIDVINYE 590 (1141)
T ss_pred HHHHHHHHHHHHhcccceEEeccHHHHHHHHHHHHHhc--cCCcc---ccchhhhhcCcccccccCcCCeEEEEEecCCC
Confidence 7899988763 8999999 99999 999999984
Q ss_pred ----------hhhhhhHH-HHHHHHHhHh---hHHHHHHHHhhHHhHHHHHHH-hhHHHHH--HHHHHhHHHHHHHHHHH
Q 047747 304 ----------DKDNLIME-KETVLRRVEE---GEKIAEDLRNSADQLNEEKLV-LGKELET--LRGKISNMEQQLESSKQ 366 (748)
Q Consensus 304 ----------l~~~lv~e-l~~a~~~~~~---~~~~Vt~L~~l~g~l~~~~g~-~~~ei~~--l~~~l~~le~~l~~~~~ 366 (748)
+|++|||+ ++.|+...++ +..+|| ++|.++..+|. ||+-... -...+..|....+.+.+
T Consensus 591 ~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~~~r~k~va----ldGtl~~ksGlmsGG~s~~~wdek~~~~L~~~k~rl~e 666 (1141)
T KOG0018|consen 591 PEYEKAVQFACGNALVCDSVEDARDLAYGGEIRFKVVA----LDGTLIHKSGLMSGGSSGAKWDEKEVDQLKEKKERLLE 666 (1141)
T ss_pred HHHHHHHHHHhccceecCCHHHHHHhhhcccccceEEE----eeeeEEeccceecCCccCCCcCHHHHHHHHHHHHHHHH
Confidence 99999999 9999666654 467899 99999999998 7643220 11345555555555555
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccchHHHHHHHH
Q 047747 367 EVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQ 446 (748)
Q Consensus 367 ~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~~~~~~~~~~~~~~~~~e 446 (748)
++..+.. ... ........+..++..+..+..++..++..+...+.++..... .+.....++..+.
T Consensus 667 el~ei~~--~~~---------e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~----~i~~~~p~i~~i~ 731 (1141)
T KOG0018|consen 667 ELKEIQK--RRK---------EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTES----EIDEFGPEISEIK 731 (1141)
T ss_pred HHHHHHH--hhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhCchHHHHH
Confidence 5555544 111 344455556666666666666666666666666666666655 5555556666777
Q ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHHHh-hhhHhHHHH
Q 047747 447 AQVTGLELELESLQAHNRDMVVQIDS-KAAAAKQLEEENLQLQARIS--DLEMLTKERGDELTTTIMKLE-ANESESLSR 522 (748)
Q Consensus 447 ~el~~l~~~~~~l~~~l~~l~~~l~~-~~~~~~~l~~~~~~l~~~l~--~l~~~l~~~~~el~~l~~~l~-~~~~~~~~~ 522 (748)
..+...+..+..|+..+...+..+.. +...+.-- +..++..-. .......+...++..+..+++ ........+
T Consensus 732 r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~---ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ 808 (1141)
T KOG0018|consen 732 RKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVR---IREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQKDTQRR 808 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCee---eehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheecccHHHH
Confidence 77777777777777777777776644 33332211 222222111 111112222233333333333 111334555
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhh
Q 047747 523 IENLTAQINDLLADLDSLHNEKSKLEEHMVFK 554 (748)
Q Consensus 523 i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l 554 (748)
+..+...+..++.+++.+......+...+.+.
T Consensus 809 ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~ 840 (1141)
T KOG0018|consen 809 VERWERSVEDLEKEIEGLKKDEEAAEKIIAEI 840 (1141)
T ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH
Confidence 55555556666666665555555555444444
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.75 E-value=1.5e-09 Score=131.52 Aligned_cols=76 Identities=22% Similarity=0.223 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhH
Q 047747 599 EYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGI 674 (748)
Q Consensus 599 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i 674 (748)
.....+..+...+......++.+..+...+...+..+...+.+++..+.+++.....++.++.+++..+..++..+
T Consensus 1467 ~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~l 1542 (1930)
T KOG0161|consen 1467 QLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAAL 1542 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333444444444455555555555555555555555555555555555555555444433
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.73 E-value=3.4e-11 Score=150.50 Aligned_cols=145 Identities=22% Similarity=0.332 Sum_probs=78.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 047747 352 GKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMH 431 (748)
Q Consensus 352 ~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~~~ 431 (748)
..+..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+..
T Consensus 670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 747 (1179)
T TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE-- 747 (1179)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 455666667777777777776666666666666666666666666666666666666666666666665555555544
Q ss_pred hhhccchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 432 EVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKE 500 (748)
Q Consensus 432 ~~~~~~~~~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~ 500 (748)
.+......+..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..
T Consensus 748 --e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 814 (1179)
T TIGR02168 748 --RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL 814 (1179)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444433444444444444444444444333
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.73 E-value=2.8e-09 Score=129.27 Aligned_cols=100 Identities=20% Similarity=0.166 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhhhh----
Q 047747 627 SLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKA---- 702 (748)
Q Consensus 627 ~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~~~~~a---- 702 (748)
.+...+..++.+++....+.....++..........+..++..-....-.++.....+......+..++.+.+..+
T Consensus 1720 klE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~ 1799 (1930)
T KOG0161|consen 1720 KLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGG 1799 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3444444444444444444444444444444444444444444444444444444444444445555555443222
Q ss_pred hHHHHHHHHhhcchHhhhccCCCC
Q 047747 703 SAQITAMAAQASLPQISRNGAGAG 726 (748)
Q Consensus 703 ~~~~~~l~~~i~~Lk~~l~~lG~~ 726 (748)
-..+..|..+|..|...+++-|-+
T Consensus 1800 k~~i~~Learir~LE~~l~~E~~~ 1823 (1930)
T KOG0161|consen 1800 KKQIAKLEARIRELESELEGEQRR 1823 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhh
Confidence 234677888888888888766544
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=7.5e-10 Score=136.84 Aligned_cols=132 Identities=13% Similarity=0.170 Sum_probs=62.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 346 ELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVS 425 (748)
Q Consensus 346 ei~~l~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~ 425 (748)
+++.+...+..++.++..+...+..+...+......+..+.. +......+..+..++..++.++..+...+ .
T Consensus 745 eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l-------~ 816 (1311)
T TIGR00606 745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKL-------Q 816 (1311)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------c
Confidence 444455555555555555555555555555544444444433 22333333444444444444444433333 2
Q ss_pred hHHhhhhhhccchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 426 SLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDL 494 (748)
Q Consensus 426 ~l~~~~~~~~~~~~~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l 494 (748)
... . ...+.+++.++..+...+..+...+..+..........+..|+..+..+......+
T Consensus 817 ~~~-------~--~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl 876 (1311)
T TIGR00606 817 GSD-------L--DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQI 876 (1311)
T ss_pred ccc-------c--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1 12445556666666666666666665555555555555555555444444333333
No 13
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.67 E-value=9.4e-09 Score=128.36 Aligned_cols=167 Identities=19% Similarity=0.176 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047747 564 GLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLG 643 (748)
Q Consensus 564 ~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~ 643 (748)
.+...+..+...+..+...+..+...+..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+.
T Consensus 802 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 881 (1164)
T TIGR02169 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE 881 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444433333333333333344333333333333333333334444444444444444444
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhhh---------hhHHHHHHHHhhc
Q 047747 644 NQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENK---------ASAQITAMAAQAS 714 (748)
Q Consensus 644 ~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~~~~~---------a~~~~~~l~~~i~ 714 (748)
.++..+...+..+...+..+...+..+...+..+...+..+...+..+...+...... ....+..+...+.
T Consensus 882 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 961 (1164)
T TIGR02169 882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQ 961 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444433333222100 0123467888999
Q ss_pred chHhhhccCCCCceee
Q 047747 715 LPQISRNGAGAGSCLV 730 (748)
Q Consensus 715 ~Lk~~l~~lG~~~~~~ 730 (748)
.+..+|..+||++...
T Consensus 962 ~l~~~i~~l~~vN~~A 977 (1164)
T TIGR02169 962 RVEEEIRALEPVNMLA 977 (1164)
T ss_pred HHHHHHHHcCCCChHH
Confidence 9999999999976443
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.66 E-value=3.9e-08 Score=120.34 Aligned_cols=24 Identities=4% Similarity=-0.004 Sum_probs=20.6
Q ss_pred HHHHhhcchHhhhccCCCCceeee
Q 047747 708 AMAAQASLPQISRNGAGAGSCLVL 731 (748)
Q Consensus 708 ~l~~~i~~Lk~~l~~lG~~~~~~~ 731 (748)
.+...+..++.++..+||++..++
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~Ai 969 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLRAI 969 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChhHH
Confidence 688999999999999999995443
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=99.65 E-value=4.8e-09 Score=126.11 Aligned_cols=14 Identities=0% Similarity=-0.308 Sum_probs=6.0
Q ss_pred HHHHhhcchHhhhc
Q 047747 708 AMAAQASLPQISRN 721 (748)
Q Consensus 708 ~l~~~i~~Lk~~l~ 721 (748)
.+...+..+-..+.
T Consensus 738 ~~~~~~~~~~~~~~ 751 (880)
T PRK02224 738 TLERMLNETFDLVY 751 (880)
T ss_pred HHHHHHHHHHHHHc
Confidence 34444444444443
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.62 E-value=1.8e-08 Score=113.82 Aligned_cols=28 Identities=11% Similarity=0.272 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhhcc
Q 047747 62 LIEGFHSQYQSLYAQYDNLRGELKKKIH 89 (748)
Q Consensus 62 ~~~e~~~~~~~l~~~~~~~~~~~~~~~~ 89 (748)
..+++.+.|..|+.-|+...+.+.....
T Consensus 4 ql~~~q~E~e~L~~ele~~~~~l~~~~~ 31 (775)
T PF10174_consen 4 QLERLQRENERLRRELERKQSKLGSSMN 31 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3567888899999999998888877653
No 17
>PRK02224 chromosome segregation protein; Provisional
Probab=99.62 E-value=2.9e-08 Score=119.39 Aligned_cols=6 Identities=0% Similarity=-0.435 Sum_probs=2.3
Q ss_pred chHhhh
Q 047747 715 LPQISR 720 (748)
Q Consensus 715 ~Lk~~l 720 (748)
.+...+
T Consensus 738 ~~~~~~ 743 (880)
T PRK02224 738 TLERML 743 (880)
T ss_pred HHHHHH
Confidence 333433
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.58 E-value=1e-07 Score=118.10 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=14.2
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHhhc
Q 047747 20 PEKDEQLKGNKIEIEDKFKKILKLVQ 45 (748)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (748)
|..-.||...+.....++..+-.-+.
T Consensus 297 ~~s~eEL~~ll~~f~~~~~e~~~~~~ 322 (1311)
T TIGR00606 297 QGTDEQLNDLYHNHQRTVREKERELV 322 (1311)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666655555555444333
No 19
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.57 E-value=1.1e-07 Score=107.68 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 047747 128 KTTDGMKQELDAATLEVSELKRR 150 (748)
Q Consensus 128 ~~~~~lk~~l~~~~~ei~~l~~~ 150 (748)
..+..|+.++......+......
T Consensus 10 ~E~e~L~~ele~~~~~l~~~~~~ 32 (775)
T PF10174_consen 10 RENERLRRELERKQSKLGSSMNS 32 (775)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHh
Confidence 34444444444444444333333
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=99.53 E-value=5.5e-07 Score=108.69 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047747 389 ISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLV 428 (748)
Q Consensus 389 l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~ 428 (748)
+..+......+...+..+...+..+...+..+...+..+.
T Consensus 393 l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 393 LEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444455555555555555555554444443
No 21
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.53 E-value=5.4e-07 Score=107.94 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 047747 140 ATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAG 211 (748)
Q Consensus 140 ~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~ 211 (748)
++.++..++..+..+..+...+.....-...++..++..|...+.++..+......+...+..-...+..+.
T Consensus 659 l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s 730 (1822)
T KOG4674|consen 659 LQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLS 730 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444444444333333333333
No 22
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.50 E-value=8.6e-07 Score=106.27 Aligned_cols=151 Identities=21% Similarity=0.262 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccc
Q 047747 358 EQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNE 437 (748)
Q Consensus 358 e~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~~~~~~~~~ 437 (748)
...+.-+...+.-+...+.....+...+..+...+..-|......+..+..++-.....+..+..++..+.. .-.-
T Consensus 681 ~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKq----E~~l 756 (1822)
T KOG4674|consen 681 KNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQ----EKLL 756 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHH
Confidence 333334445555555555555555555555555555555555555556666666666666666666666655 2222
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 047747 438 TLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSK----AAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKL 512 (748)
Q Consensus 438 ~~~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~----~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l~~~l 512 (748)
.......+..++..|..+...++..+..++...... ......+...+..+...+..+...+.....++..+...+
T Consensus 757 l~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~ 835 (1822)
T KOG4674|consen 757 LKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSL 835 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 222233334444444444444443333333322221 112233334444444444444444444444444444333
No 23
>PRK03918 chromosome segregation protein; Provisional
Probab=99.42 E-value=3.3e-06 Score=101.99 Aligned_cols=27 Identities=7% Similarity=0.320 Sum_probs=12.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047747 125 EYQKTTDGMKQELDAATLEVSELKRRM 151 (748)
Q Consensus 125 ~~~~~~~~lk~~l~~~~~ei~~l~~~l 151 (748)
.|...+..++.....+...+..+...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (880)
T PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFI 185 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444444444433
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.26 E-value=7.4e-13 Score=154.27 Aligned_cols=31 Identities=6% Similarity=0.143 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 047747 55 IKEPLVELIEGFHSQYQSLYAQYDNLRGELK 85 (748)
Q Consensus 55 ~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~ 85 (748)
+|....+...++.+.+..|.++++...+...
T Consensus 61 ~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~ 91 (859)
T PF01576_consen 61 ARAKAEKQRRDLSEELEELKERLEEAGGATQ 91 (859)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 3777778888888888888888888877644
No 25
>PRK01156 chromosome segregation protein; Provisional
Probab=99.18 E-value=5.5e-05 Score=91.26 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 132 GMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAG 176 (748)
Q Consensus 132 ~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le 176 (748)
.+...+..+...+..+...+..+..+...+...+......+..++
T Consensus 194 ~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~ 238 (895)
T PRK01156 194 SSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLK 238 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444333
No 26
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=3e-05 Score=86.78 Aligned_cols=213 Identities=18% Similarity=0.111 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 047747 520 LSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISE 599 (748)
Q Consensus 520 ~~~i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~ 599 (748)
...+..+..+|......+......+..++..+......-...+.++...+..+...+..........+.....+..+.+.
T Consensus 747 ~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~ 826 (1174)
T KOG0933|consen 747 LEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEE 826 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444455555444444433344555666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHH
Q 047747 600 YIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEK 679 (748)
Q Consensus 600 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~ 679 (748)
+..++...+..+......+..+..++..+...+...+.....+..++......+...+.++..+-...+.+...+...+.
T Consensus 827 l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l 906 (1174)
T KOG0933|consen 827 LEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGEL 906 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccc
Confidence 66666666666666666666666666666666666666666666666666666666666655444444444443333333
Q ss_pred HHHHHHHH--------------hHHHHHHHhhhh-------------hhhhHHHHHHHHhhcchHhhhccCCCCceeeec
Q 047747 680 TLTERGSE--------------LSSLQEKHINVE-------------NKASAQITAMAAQASLPQISRNGAGAGSCLVLH 732 (748)
Q Consensus 680 ~~~~~~~~--------------l~~l~~~l~~~~-------------~~a~~~~~~l~~~i~~Lk~~l~~lG~~~~~~~~ 732 (748)
....+..+ ++.+..++.-.. ..-+.++.....++..|+.....++...++..+
T Consensus 907 ~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m 986 (1174)
T KOG0933|consen 907 ERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNM 986 (1174)
T ss_pred hHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHH
Confidence 33322222 222222111110 000334556677777777777777776666543
No 27
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=4.2e-05 Score=85.29 Aligned_cols=112 Identities=22% Similarity=0.281 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 047747 131 DGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALS-----RIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQ 205 (748)
Q Consensus 131 ~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~-----~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~ 205 (748)
...++.-.+....+.-+..++..+..+++.+. .|+.+.. .+.-+..++.+....+..++........+......
T Consensus 180 ~ET~qK~ekI~ell~yieerLreLEeEKeeL~-~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~ 258 (1200)
T KOG0964|consen 180 EETKQKREKINELLKYIEERLRELEEEKEELE-KYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYID 258 (1200)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHH
Confidence 34444556666667777888888888888876 4666554 34455677888888888887777776666666666
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 206 KLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQ 243 (748)
Q Consensus 206 ~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~ 243 (748)
.+.........+..++..+...+..+..+.+.+.....
T Consensus 259 ~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t 296 (1200)
T KOG0964|consen 259 ALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARET 296 (1200)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777777777777777666666665555543
No 28
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=6.4e-05 Score=85.78 Aligned_cols=23 Identities=9% Similarity=-0.019 Sum_probs=14.5
Q ss_pred HHHhhcchHhhhccCCCCceeee
Q 047747 709 MAAQASLPQISRNGAGAGSCLVL 731 (748)
Q Consensus 709 l~~~i~~Lk~~l~~lG~~~~~~~ 731 (748)
+...|..|+.++.++|..+..++
T Consensus 1076 i~e~i~~lE~~~~~l~~vd~~~i 1098 (1293)
T KOG0996|consen 1076 INEKIALLEKRVEELREVDLGVI 1098 (1293)
T ss_pred HHHHHHHHHHHHHHhcCCChHHH
Confidence 44467777777777765554443
No 29
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.07 E-value=2e-11 Score=142.42 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHhhcchHhhhccCCCCc
Q 047747 705 QITAMAAQASLPQISRNGAGAGS 727 (748)
Q Consensus 705 ~~~~l~~~i~~Lk~~l~~lG~~~ 727 (748)
.-..|..+|..|+.+|..+....
T Consensus 715 ~k~~LE~q~keLq~rl~e~E~~~ 737 (859)
T PF01576_consen 715 EKKALERQVKELQARLEEAEQSA 737 (859)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556777777777776654433
No 30
>PRK01156 chromosome segregation protein; Provisional
Probab=99.05 E-value=0.00019 Score=86.62 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 391 EMSNEFQQAQNLIQDLMAESSQLKEKMVEKE 421 (748)
Q Consensus 391 ~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le 421 (748)
.+...+..+...+..+..++..+...+..+.
T Consensus 413 e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 413 EINVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555444444444
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.01 E-value=6.3e-05 Score=81.01 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=12.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHH
Q 047747 347 LETLRGKISNMEQQLESSKQEVSDLSQNLTATEE 380 (748)
Q Consensus 347 i~~l~~~l~~le~~l~~~~~~l~~l~~~l~~~~~ 380 (748)
+..+..+...|......++.+...++..+..++.
T Consensus 145 lE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~ 178 (546)
T PF07888_consen 145 LEECQKEKEELLKENEQLEEEVEQLREEVERLEA 178 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.98 E-value=8e-05 Score=80.22 Aligned_cols=42 Identities=29% Similarity=0.347 Sum_probs=17.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHH
Q 047747 639 VASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKT 680 (748)
Q Consensus 639 l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~ 680 (748)
+.+...++.+++..++-+..+...+..+...|..-|..|+..
T Consensus 412 lsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r 453 (546)
T PF07888_consen 412 LSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQR 453 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444443333
No 33
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.98 E-value=0.00019 Score=81.29 Aligned_cols=170 Identities=15% Similarity=0.144 Sum_probs=91.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHH
Q 047747 560 TQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVN---------KTEVQQKILEEIESLTA 630 (748)
Q Consensus 560 ~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~---------~~~~~~~~~~~~~~l~~ 630 (748)
..+..+...+..+......+...+..+..........+..+...+..+...+.. |..-+..+...+..+..
T Consensus 383 e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~ 462 (569)
T PRK04778 383 EELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAE 462 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444445555555444444444455555555544444433 22233344444555555
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHH
Q 047747 631 RIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMA 710 (748)
Q Consensus 631 ~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~~~~~a~~~~~~l~ 710 (748)
.+..-.-.+..+..++..+..++.++..+..++......++..|.. -.+....+..+...|..... ...--.++
T Consensus 463 ~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy----~nRfr~~~~~V~~~f~~Ae~--lF~~~~Y~ 536 (569)
T PRK04778 463 ELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY----ANRYRSDNEEVAEALNEAER--LFREYDYK 536 (569)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCCCCHHHHHHHHHHHH--HHHhCChH
Confidence 5554444455666678888888888888888888888777776665 33445566666666654320 00111234
Q ss_pred HhhcchHhhhccCCCCceeeeccCc
Q 047747 711 AQASLPQISRNGAGAGSCLVLHSPY 735 (748)
Q Consensus 711 ~~i~~Lk~~l~~lG~~~~~~~~~~~ 735 (748)
.-+..+-.-|...-||+..++..-|
T Consensus 537 ~al~~~~~alE~vePG~~~ri~~~y 561 (569)
T PRK04778 537 AALEIIATALEKVEPGVTKRIEDSY 561 (569)
T ss_pred HHHHHHHHHHHhhCCcHHHHHHHHH
Confidence 4444445555666666665554443
No 34
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.98 E-value=0.00021 Score=81.75 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=25.2
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047747 443 KELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERG 502 (748)
Q Consensus 443 ~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~ 502 (748)
..+..++.....+++.....+..+..++.....+...+..........+......+..+.
T Consensus 737 ~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~ 796 (1074)
T KOG0250|consen 737 EDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALK 796 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334444444444444444444444444444444444444444443333333333333333
No 35
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.96 E-value=4.8e-05 Score=85.97 Aligned_cols=118 Identities=12% Similarity=0.100 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhh
Q 047747 618 QQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHIN 697 (748)
Q Consensus 618 ~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~ 697 (748)
...+..++..+...+..+...+......|..+...+..+..++..+......+...+..+.....+....+..+...+..
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666666666666666666666666666666666666666655555555555555444443
Q ss_pred hh------------hhhhHHHHHHHHhhcchHhhhccCCCCceeeeccCcc
Q 047747 698 VE------------NKASAQITAMAAQASLPQISRNGAGAGSCLVLHSPYS 736 (748)
Q Consensus 698 ~~------------~~a~~~~~~l~~~i~~Lk~~l~~lG~~~~~~~~~~~~ 736 (748)
.. ......+..+...+..|..+|.. ||.+...+...|-
T Consensus 430 ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~ 479 (569)
T PRK04778 430 IKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLE 479 (569)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHH
Confidence 32 11244567889999999999999 9999988875543
No 36
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.92 E-value=0.0007 Score=83.57 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=39.4
Q ss_pred HHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 047747 444 ELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLE 513 (748)
Q Consensus 444 ~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l~~~l~ 513 (748)
.++..+..+...+..+......++..+......+..+...+......+......+..+..+...+..++.
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666666666666666666666655555555555555555544444444433
No 37
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.77 E-value=0.00079 Score=75.10 Aligned_cols=9 Identities=11% Similarity=0.398 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 047747 143 EVSELKRRM 151 (748)
Q Consensus 143 ei~~l~~~l 151 (748)
++..++..+
T Consensus 35 eL~~~qeel 43 (522)
T PF05701_consen 35 ELEKAQEEL 43 (522)
T ss_pred HHHHHHHHH
Confidence 333333333
No 38
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.74 E-value=4.4e-05 Score=75.97 Aligned_cols=124 Identities=16% Similarity=0.171 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 047747 568 QVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKS 647 (748)
Q Consensus 568 ~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~ 647 (748)
........+..+...+..++..+.........+...+..+...+......+..+.........+...++..|..|...+.
T Consensus 107 ~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lk 186 (237)
T PF00261_consen 107 RAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLK 186 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444444444444444455555555555555555
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHH
Q 047747 648 DLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSL 691 (748)
Q Consensus 648 ~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l 691 (748)
....+..+.+..+..|...+..+...+.........+...++..
T Consensus 187 eaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 187 EAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555444444444444433
No 39
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.72 E-value=0.00044 Score=72.54 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=12.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 047747 354 ISNMEQQLESSKQEVSDLSQNLTATEEENK 383 (748)
Q Consensus 354 l~~le~~l~~~~~~l~~l~~~l~~~~~~l~ 383 (748)
+..|...+...-..+..|+.....+...+.
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~ 35 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIE 35 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 334444444433444444443333333333
No 40
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.67 E-value=0.0013 Score=72.00 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 126 YQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNL 182 (748)
Q Consensus 126 ~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l 182 (748)
|......+.+.+...+.+|..|+.++..++.++..++..+.-....+.+.+.+|.++
T Consensus 90 yRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~ 146 (1265)
T KOG0976|consen 90 YRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENL 146 (1265)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333444444444444444444444444444444444333333333333333333
No 41
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.67 E-value=7.5e-05 Score=74.31 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=29.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 047747 573 QQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKS 647 (748)
Q Consensus 573 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~ 647 (748)
...+..+...+..++............+...|..+...+..+......+...+..+...++.++..+......+.
T Consensus 147 E~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~ 221 (237)
T PF00261_consen 147 EEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYK 221 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333344444444444444444333333333333333333333333333333333
No 42
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.62 E-value=0.0023 Score=72.21 Aligned_cols=51 Identities=24% Similarity=0.250 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 196 LTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTAL 246 (748)
Q Consensus 196 l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~ 246 (748)
+..++..++.++..+..++.+.-..+..++.+|+.++.++..++++..+..
T Consensus 175 L~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l 225 (1195)
T KOG4643|consen 175 LEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFL 225 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555566666666666666666666654443
No 43
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.54 E-value=0.0013 Score=71.05 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhh
Q 047747 620 KILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHIN 697 (748)
Q Consensus 620 ~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~ 697 (748)
...+++..+...+..+...+.++......+..++.+++.++.+-.... +..+...+..+.++..++..+...+..
T Consensus 293 ~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~---e~~L~~kd~~i~~mReec~~l~~Elq~ 367 (546)
T KOG0977|consen 293 YAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSF---EQALNDKDAEIAKMREECQQLSVELQK 367 (546)
T ss_pred HHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhh---hhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555444333322 334444444444444444444444433
No 44
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.52 E-value=0.0016 Score=70.55 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=21.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 047747 352 GKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLK 388 (748)
Q Consensus 352 ~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~ 388 (748)
.+|..|...|...-..+..|+.+...++.++..++..
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~ 78 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGV 78 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666666666666666666555555555555443
No 45
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.50 E-value=0.0048 Score=69.57 Aligned_cols=115 Identities=19% Similarity=0.252 Sum_probs=54.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 047747 353 KISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHE 432 (748)
Q Consensus 353 ~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~~~~ 432 (748)
.|..++.++..+...+.....+...+......+......+..+...+..++..++.+-.++-....+++.+--.++. .-
T Consensus 35 ~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQK-qv 113 (717)
T PF09730_consen 35 RILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQK-QV 113 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HH
Confidence 34444444444444444444444444444444444444444455555555555555544544455555444433333 00
Q ss_pred hhccchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHH
Q 047747 433 VRGNETLAQIKELQAQVTGLELELESLQAHNRDMVV 468 (748)
Q Consensus 433 ~~~~~~~~~~~~~e~el~~l~~~~~~l~~~l~~l~~ 468 (748)
-.+...+-++..++-++..+..++.-+..+++++..
T Consensus 114 s~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r 149 (717)
T PF09730_consen 114 SVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR 149 (717)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011123445666666666666666666666555443
No 46
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.48 E-value=0.011 Score=73.09 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 223 DMKRQLTARSEEKEALNLEYQTALSKIQEAEEII 256 (748)
Q Consensus 223 ~l~~~l~~l~~e~~~~~~~l~e~~~~~~~~~~~l 256 (748)
.++..+..+...+..+...+..+..+|......+
T Consensus 356 ~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l 389 (1201)
T PF12128_consen 356 EWRNELENLQEQLDLLTSKHQDIESKYNKLKQKL 389 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443333
No 47
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.47 E-value=0.0055 Score=69.13 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 132 GMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTE 192 (748)
Q Consensus 132 ~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~ 192 (748)
.+...+..++.++..++..+.....|.+.+.............++.+...++.++..++.+
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~r 91 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFR 91 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666666665555555555444444444444444444333
No 48
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.47 E-value=0.0059 Score=69.08 Aligned_cols=38 Identities=13% Similarity=0.378 Sum_probs=20.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 047747 346 ELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENK 383 (748)
Q Consensus 346 ei~~l~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~ 383 (748)
+|-+|...+..+..+.+..+.+.+.|..+...++....
T Consensus 302 eiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~e 339 (1195)
T KOG4643|consen 302 EIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKE 339 (1195)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666665555555555554444444333
No 49
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.46 E-value=0.0055 Score=68.31 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhcc----chHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHH
Q 047747 398 QAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGN----ETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDSK 473 (748)
Q Consensus 398 ~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~~~~~~~~----~~~~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~ 473 (748)
.++...+.|+.+++.+++++..++-+++-++.+.+.... ...-++.+++.....|...+-.++.-...-......+
T Consensus 322 mAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~ 401 (1243)
T KOG0971|consen 322 MAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKL 401 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 344445555555666666666665555555553333322 2344666677666666666655555444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 047747 474 AAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLE 513 (748)
Q Consensus 474 ~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l~~~l~ 513 (748)
..+++....++.++......+..++...+..+..++.+++
T Consensus 402 ~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 402 QKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555544
No 50
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.41 E-value=0.0088 Score=68.35 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 196 LTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLE 241 (748)
Q Consensus 196 l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~ 241 (748)
+......++..+......+...+..+..+...+.....+++.++..
T Consensus 1230 l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~ 1275 (1758)
T KOG0994|consen 1230 LASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQRE 1275 (1758)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHH
Confidence 3333333444444444444444444444444443333444444333
No 51
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.38 E-value=0.0068 Score=65.90 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 174 EAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAE 253 (748)
Q Consensus 174 ~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~~~~~~ 253 (748)
.+..++......+.-+...+.+....+.++.-.+......+..++........-|.....+.+.+...+..++....+.+
T Consensus 230 ey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~ 309 (786)
T PF05483_consen 230 EYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESE 309 (786)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555556666666666666666666666666666666666666666666666666666655555444433
Q ss_pred H
Q 047747 254 E 254 (748)
Q Consensus 254 ~ 254 (748)
.
T Consensus 310 ~ 310 (786)
T PF05483_consen 310 S 310 (786)
T ss_pred H
Confidence 3
No 52
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.36 E-value=0.0094 Score=66.61 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 132 GMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLK 183 (748)
Q Consensus 132 ~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~ 183 (748)
....++..++.++..++..+.....++.....++......+.++...|....
T Consensus 31 ~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~ 82 (522)
T PF05701_consen 31 EKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQ 82 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777777777776666555555555555544443
No 53
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.35 E-value=0.01 Score=66.35 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=11.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 047747 350 LRGKISNMEQQLESSKQEVSD 370 (748)
Q Consensus 350 l~~~l~~le~~l~~~~~~l~~ 370 (748)
|+.++.+|..+++.+.-...+
T Consensus 229 Lr~QvrdLtEkLetlR~kR~E 249 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAE 249 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 455555666666555444333
No 54
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.34 E-value=0.023 Score=70.45 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHH
Q 047747 633 KSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTER 684 (748)
Q Consensus 633 ~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~ 684 (748)
+.+...+.........+...+...+.++..+...+......+..+...+...
T Consensus 1063 ~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~a 1114 (1486)
T PRK04863 1063 DELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNA 1114 (1486)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444333
No 55
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.33 E-value=4.7e-06 Score=97.19 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=13.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhHHHHH
Q 047747 666 EKLGLLDGIFELEKTLTERGSELSSLQE 693 (748)
Q Consensus 666 ~~~~l~~~i~~le~~~~~~~~~l~~l~~ 693 (748)
++..+...+..++..+.+++.-|..-..
T Consensus 607 e~~~l~~~~~~~ekr~~RLkevf~~ks~ 634 (722)
T PF05557_consen 607 EIAELKAELASAEKRNQRLKEVFKAKSQ 634 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555444443333
No 56
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.32 E-value=0.012 Score=66.13 Aligned_cols=93 Identities=22% Similarity=0.217 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHhhhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 047747 525 NLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEV 604 (748)
Q Consensus 525 ~l~~~i~~l~~el~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 604 (748)
.+...+.++...+..+....-++...+.. -..-..++..++..+...+..+...+.....++..+..+-
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~-----------Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~ 232 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQS-----------EQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQR 232 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44455555555555555444444333322 2222223344444444444444444444444455555544
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 047747 605 QILKEEIVNKTEVQQKILEEIESL 628 (748)
Q Consensus 605 ~~l~~~l~~~~~~~~~~~~~~~~l 628 (748)
..+...+..|...+..+..+...+
T Consensus 233 dq~~~~Lqqy~a~~q~l~~e~e~L 256 (617)
T PF15070_consen 233 DQYLGHLQQYVAAYQQLASEKEEL 256 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555544444443333333
No 57
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=98.27 E-value=0.023 Score=67.35 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 440 AQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEML 497 (748)
Q Consensus 440 ~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~ 497 (748)
..+.++..+...+......+...+..++.........+..+....+........+...
T Consensus 819 ~t~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~ 876 (1294)
T KOG0962|consen 819 RTVDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERS 876 (1294)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666655555555555555444444444444333
No 58
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.26 E-value=0.017 Score=65.21 Aligned_cols=55 Identities=11% Similarity=0.251 Sum_probs=28.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047747 559 STQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVN 613 (748)
Q Consensus 559 ~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~ 613 (748)
...+..+...+..+......+...+..+...-......+..+...+..++..+..
T Consensus 378 ~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek 432 (560)
T PF06160_consen 378 QEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEK 432 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555555555555555555555544
No 59
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.21 E-value=0.016 Score=63.10 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 155 SEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEE 234 (748)
Q Consensus 155 ~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e 234 (748)
..+...-...++.....|....+-|..++=...++...+.+.-.+..++..+......-..-+..............+.+
T Consensus 98 esd~~qKErkLqenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~nnaTR~lCNlLKeT~~rsaEK~~~yE~E 177 (786)
T PF05483_consen 98 ESDLKQKERKLQENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKENNATRHLCNLLKETCQRSAEKMKKYEYE 177 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444555555555566555555555555555555555555555555555556666666666666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 235 KEALNLEYQTALSKIQEAEEIIRN 258 (748)
Q Consensus 235 ~~~~~~~l~e~~~~~~~~~~~l~~ 258 (748)
.+....-|......|...+..+..
T Consensus 178 REET~qly~~l~~niekMi~aFEe 201 (786)
T PF05483_consen 178 REETRQLYMDLNENIEKMIAAFEE 201 (786)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 777777766666666666655543
No 60
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.19 E-value=0.019 Score=63.23 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=9.4
Q ss_pred HHHHhHHHHHhhhhhHHHHHHh
Q 047747 262 EAESLNNDMLEGLAVNAELKQK 283 (748)
Q Consensus 262 el~~~~~~~~~ai~~~~~Lk~~ 283 (748)
.+..+...|.+-++.+..++..
T Consensus 177 ~lt~~~~q~~tkl~e~~~en~~ 198 (1265)
T KOG0976|consen 177 ELNEFNMEFQTKLAEANREKKA 198 (1265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH
Confidence 3444444455444444333333
No 61
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=0.029 Score=64.41 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=27.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 125 EYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALN 162 (748)
Q Consensus 125 ~~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~ 162 (748)
.+...|..++.+...++......-.+...+..++...+
T Consensus 157 ElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK 194 (1141)
T KOG0018|consen 157 ELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAK 194 (1141)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHH
Confidence 36788899999988888877777777776666663333
No 62
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.14 E-value=0.029 Score=63.36 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 047747 399 AQNLIQDLMAESSQLKEKMVEKEREVSSLVE 429 (748)
Q Consensus 399 l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~ 429 (748)
.......+...+..+......+..++..+..
T Consensus 304 V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 304 VEKNLKELYEYLEHAKEQNKELKEELERVSQ 334 (560)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555554
No 63
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.13 E-value=0.012 Score=58.44 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 452 LELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEML 497 (748)
Q Consensus 452 l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~ 497 (748)
+....+.+..++..+......+......+...+..+......+...
T Consensus 39 ~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~k 84 (294)
T COG1340 39 LAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAK 84 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333
No 64
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.05 E-value=0.019 Score=64.27 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=59.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 047747 574 QELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVN--KTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEE 651 (748)
Q Consensus 574 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~--~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~ 651 (748)
.++..++..+..+..++......+..+..+++.+-..+.. |-..+-++...+..-+.+|..+-.....++.++..+..
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~g 526 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTG 526 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333211 44444444444444444444444444444444444444
Q ss_pred HHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHHhhcchHhhhc
Q 047747 652 QMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMAAQASLPQISRN 721 (748)
Q Consensus 652 ~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~~~~~a~~~~~~l~~~i~~Lk~~l~ 721 (748)
++..-=....++--.-..-......+-+-+..+...|..+...+.. ...+...|..|..+|+
T Consensus 527 kL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~--------tG~~~rEirdLe~qI~ 588 (594)
T PF05667_consen 527 KLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVEE--------TGTISREIRDLEEQID 588 (594)
T ss_pred HHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHH
Confidence 4443333333332222222223333334444444444444443332 2334444455554444
No 65
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.93 E-value=0.084 Score=61.30 Aligned_cols=115 Identities=14% Similarity=0.177 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 047747 137 LDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAE 216 (748)
Q Consensus 137 l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~ 216 (748)
+--..+.++.+..-+..+..-++.....+......+..+.+++...+..+..+.. +..+...+..+.. .-++..+..
T Consensus 202 lfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~-~e~~~~~l~~Lk~--k~~W~~V~~ 278 (1074)
T KOG0250|consen 202 LFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQ-LEDLKENLEQLKA--KMAWAWVNE 278 (1074)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHH
Confidence 3344456777777777777777777777777777777777777777766665443 1222222222221 124555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 217 LNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEE 254 (748)
Q Consensus 217 l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~~~~~~~ 254 (748)
...++..+...+...+..+..+..++......+..+..
T Consensus 279 ~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~ 316 (1074)
T KOG0250|consen 279 VERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQ 316 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55556666666555555555555555554444444443
No 66
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.88 E-value=0.035 Score=55.25 Aligned_cols=9 Identities=22% Similarity=0.183 Sum_probs=3.9
Q ss_pred hHHHHHHHh
Q 047747 688 LSSLQEKHI 696 (748)
Q Consensus 688 l~~l~~~l~ 696 (748)
-..+.++|.
T Consensus 267 a~ei~EKfk 275 (294)
T COG1340 267 AEEIYEKFK 275 (294)
T ss_pred HHHHHHHHh
Confidence 344444443
No 67
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.88 E-value=0.0068 Score=69.39 Aligned_cols=8 Identities=25% Similarity=0.775 Sum_probs=3.8
Q ss_pred hhhccccc
Q 047747 737 KIILMDEK 744 (748)
Q Consensus 737 ~~~~~~~~ 744 (748)
.|++|||.
T Consensus 498 ~~lilDEp 505 (562)
T PHA02562 498 NLLILDEV 505 (562)
T ss_pred CeEEEecc
Confidence 34455554
No 68
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.85 E-value=0.024 Score=64.87 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=17.4
Q ss_pred HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 047747 446 QAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLE 481 (748)
Q Consensus 446 e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~ 481 (748)
...+..++.++..+..++..+...+..+...+..+.
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~ 208 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQR 208 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333444555555555555555555544444444443
No 69
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.85 E-value=0.033 Score=63.72 Aligned_cols=35 Identities=23% Similarity=0.102 Sum_probs=15.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhh
Q 047747 638 EVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLD 672 (748)
Q Consensus 638 ~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~ 672 (748)
.+.+...+++.+...+...+.++.+|+..+..+..
T Consensus 623 aLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 623 ALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444444444455555554444443
No 70
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.85 E-value=0.0015 Score=63.44 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHH
Q 047747 628 LTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEE 666 (748)
Q Consensus 628 l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~ 666 (748)
+..++..++..+..+..++..+...+..+..++..++..
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~ 132 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKER 132 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 71
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.84 E-value=0.093 Score=58.93 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhhh
Q 047747 523 IENLTAQINDLLADLDSLHNEKSKLEEHMVFKD 555 (748)
Q Consensus 523 i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l~ 555 (748)
+..+...+..+..++......+..|..++..+.
T Consensus 449 ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~ 481 (594)
T PF05667_consen 449 IKELREEIKEIEEEIRQKEELYKQLVKELEKLP 481 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444455555555555555555555554444
No 72
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.79 E-value=0.15 Score=59.79 Aligned_cols=7 Identities=14% Similarity=0.121 Sum_probs=4.1
Q ss_pred CCchhhh
Q 047747 21 EKDEQLK 27 (748)
Q Consensus 21 ~~~~~~~ 27 (748)
-+|+|+-
T Consensus 132 ~ns~Wiv 138 (1317)
T KOG0612|consen 132 GNSEWIV 138 (1317)
T ss_pred CCcHHHH
Confidence 3477764
No 73
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.79 E-value=0.12 Score=58.49 Aligned_cols=38 Identities=34% Similarity=0.413 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 147 LKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKL 184 (748)
Q Consensus 147 l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~ 184 (748)
++.++..+..+...+..........+.+++..|..++.
T Consensus 27 ~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~ 64 (617)
T PF15070_consen 27 WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKN 64 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 74
>PRK11637 AmiB activator; Provisional
Probab=97.78 E-value=0.046 Score=59.92 Aligned_cols=10 Identities=0% Similarity=0.302 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 047747 409 ESSQLKEKMV 418 (748)
Q Consensus 409 ~~~~l~~~l~ 418 (748)
++..+..++.
T Consensus 48 ~l~~l~~qi~ 57 (428)
T PRK11637 48 QLKSIQQDIA 57 (428)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 75
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.77 E-value=0.024 Score=64.80 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=33.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhh
Q 047747 634 SLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHIN 697 (748)
Q Consensus 634 ~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~ 697 (748)
.|-..+..++.+...|+.-+..-..-..+|=..+.+....+.-++..+.....+|..++.++..
T Consensus 591 ~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 591 VLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444555555555555555555555556666666665544
No 76
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.75 E-value=0.00029 Score=82.34 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 047747 623 EEIESLTARIKSLELEVASLGNQKSDL-----EEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKH 695 (748)
Q Consensus 623 ~~~~~l~~~~~~l~~~l~~l~~e~~~l-----~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l 695 (748)
..+..+..+...+...+..+......- ...+.....++.+++..+..+......|..-......+|...--.+
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~l 643 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSL 643 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666665555554443211110 1223344556777777777777777777766666655555444333
No 77
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.64 E-value=0.082 Score=53.25 Aligned_cols=138 Identities=15% Similarity=0.218 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 047747 523 IENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYII 602 (748)
Q Consensus 523 i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~ 602 (748)
+..++..+..++.+...++.+...|..+...+++.-..-+.++-.++.....++..+...+.....+......++..+..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls 241 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS 241 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666555555433344455555666666666666666665555555555555555555
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 047747 603 EVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEG 660 (748)
Q Consensus 603 ~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~ 660 (748)
++..+...+..+...-+.+...+......-..+..++.+++..|.++..-+.....++
T Consensus 242 qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEEl 299 (306)
T PF04849_consen 242 QIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEEL 299 (306)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544444444333444444444444444444444444444443333333
No 78
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.21 Score=56.19 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=20.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHH
Q 047747 639 VASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEK 694 (748)
Q Consensus 639 l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~ 694 (748)
..++......++.........+.++...+..+...+..+.....+++.++..+...
T Consensus 561 ~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333
No 79
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.60 E-value=0.03 Score=54.52 Aligned_cols=64 Identities=16% Similarity=0.342 Sum_probs=27.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 354 ISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKM 417 (748)
Q Consensus 354 l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l 417 (748)
+..+..........+..+...+..+...+..+...+..+.+++..++.+++.+..++......+
T Consensus 19 ~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 19 KDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444444444444455555554444444444433
No 80
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.26 Score=55.40 Aligned_cols=14 Identities=0% Similarity=-0.190 Sum_probs=5.3
Q ss_pred HHhhcchHhhhccC
Q 047747 710 AAQASLPQISRNGA 723 (748)
Q Consensus 710 ~~~i~~Lk~~l~~l 723 (748)
...+..|++.+...
T Consensus 607 eEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 607 EEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333333333333
No 81
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.52 E-value=0.15 Score=52.62 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 047747 483 ENLQLQARISDLEML 497 (748)
Q Consensus 483 ~~~~l~~~l~~l~~~ 497 (748)
....+..++..+-.+
T Consensus 136 eN~~L~eKlK~l~eQ 150 (309)
T PF09728_consen 136 ENEELREKLKSLIEQ 150 (309)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 82
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.49 E-value=0.04 Score=49.75 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=21.3
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 445 LQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEM 496 (748)
Q Consensus 445 ~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~ 496 (748)
+...+..|+.++......+......+.......+.+...+..+..+....+.
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~ 129 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEE 129 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444444444444444444444444444444333333333333
No 83
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.39 E-value=0.76 Score=57.54 Aligned_cols=19 Identities=11% Similarity=-0.078 Sum_probs=8.1
Q ss_pred HHHHhhcchHhhhccCCCC
Q 047747 708 AMAAQASLPQISRNGAGAG 726 (748)
Q Consensus 708 ~l~~~i~~Lk~~l~~lG~~ 726 (748)
.+...+..++..+..+|-.
T Consensus 1031 ~~~e~L~E~eqe~~~~g~~ 1049 (1486)
T PRK04863 1031 AKRQMLQELKQELQDLGVP 1049 (1486)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 3344444444444444433
No 84
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.30 E-value=0.083 Score=47.71 Aligned_cols=23 Identities=9% Similarity=0.323 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHH
Q 047747 357 MEQQLESSKQEVSDLSQNLTATE 379 (748)
Q Consensus 357 le~~l~~~~~~l~~l~~~l~~~~ 379 (748)
|..+.+.+...+..+...+..+.
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le 27 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLE 27 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 85
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.25 E-value=0.16 Score=47.03 Aligned_cols=14 Identities=29% Similarity=0.081 Sum_probs=5.3
Q ss_pred hhHHHHHHHHHHhH
Q 047747 450 TGLELELESLQAHN 463 (748)
Q Consensus 450 ~~l~~~~~~l~~~l 463 (748)
..|..+...++..+
T Consensus 18 ~~L~~en~kL~~~v 31 (193)
T PF14662_consen 18 QKLADENAKLQRSV 31 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 86
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.68 Score=52.05 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047747 399 AQNLIQDLMAESSQLKEKM 417 (748)
Q Consensus 399 l~~~i~~l~~~~~~l~~~l 417 (748)
+..+...+..++......+
T Consensus 683 l~~e~eeL~~~vq~~~s~h 701 (970)
T KOG0946|consen 683 LQVENEELEEEVQDFISEH 701 (970)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 87
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.13 E-value=0.26 Score=47.01 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHhhhh
Q 047747 524 ENLTAQINDLLADLDSLHNEKSKLEEHMVFK 554 (748)
Q Consensus 524 ~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l 554 (748)
..+...+..+...+......+..|+..+.-.
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~ 151 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554444333
No 88
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.13 E-value=0.56 Score=50.86 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=10.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 047747 453 ELELESLQAHNRDMVVQIDSKAAAAKQL 480 (748)
Q Consensus 453 ~~~~~~l~~~l~~l~~~l~~~~~~~~~l 480 (748)
...+..+..++...+.++..++.....|
T Consensus 293 ~~~l~~l~~Eie~kEeE~e~lq~~~d~L 320 (581)
T KOG0995|consen 293 EKKLEMLKSEIEEKEEEIEKLQKENDEL 320 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 89
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.13 E-value=0.33 Score=48.19 Aligned_cols=12 Identities=8% Similarity=0.404 Sum_probs=5.1
Q ss_pred HHHhHHHHHHHH
Q 047747 352 GKISNMEQQLES 363 (748)
Q Consensus 352 ~~l~~le~~l~~ 363 (748)
.+|+.|..+++.
T Consensus 6 ~eia~LrlEidt 17 (305)
T PF14915_consen 6 DEIAMLRLEIDT 17 (305)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 90
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.81 Score=51.03 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHhhhhh
Q 047747 526 LTAQINDLLADLDSLHNEKSKLEEHMVFKD 555 (748)
Q Consensus 526 l~~~i~~l~~el~~l~~~~~~l~~~l~~l~ 555 (748)
+......+..+++.|...+..|...+....
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr 464 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVR 464 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhe
Confidence 344444455555555555555555554443
No 91
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.01 E-value=0.00049 Score=80.27 Aligned_cols=19 Identities=0% Similarity=-0.139 Sum_probs=0.0
Q ss_pred HHHhhcchHhhhccCCCCc
Q 047747 709 MAAQASLPQISRNGAGAGS 727 (748)
Q Consensus 709 l~~~i~~Lk~~l~~lG~~~ 727 (748)
+...+...+..|..+.+..
T Consensus 552 ~~~e~~~~~~~le~l~~~~ 570 (713)
T PF05622_consen 552 LKDELQKKREQLEELEQEL 570 (713)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444555555443
No 92
>PRK09039 hypothetical protein; Validated
Probab=97.00 E-value=0.13 Score=54.15 Aligned_cols=10 Identities=30% Similarity=0.481 Sum_probs=3.8
Q ss_pred HhHHHHHHHH
Q 047747 354 ISNMEQQLES 363 (748)
Q Consensus 354 l~~le~~l~~ 363 (748)
+...+.++..
T Consensus 48 i~~~~~eL~~ 57 (343)
T PRK09039 48 ISGKDSALDR 57 (343)
T ss_pred HhhHHHHHHH
Confidence 3333333333
No 93
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.95 E-value=0.69 Score=48.87 Aligned_cols=61 Identities=21% Similarity=0.384 Sum_probs=24.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 351 RGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESS 411 (748)
Q Consensus 351 ~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~ 411 (748)
..++..++..+.........++..+..++.++..+..++......+..+...|..+...+.
T Consensus 44 q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~ 104 (420)
T COG4942 44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN 104 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence 3334444444444344444444444444444333333333333333333333333333333
No 94
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.93 E-value=0.24 Score=44.05 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 047747 568 QVDTLQQELESLRGQKAVLEVQLEEKTREISEYI 601 (748)
Q Consensus 568 ~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~ 601 (748)
.+...+...+.+...+.+++.++.........+.
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~ 44 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLI 44 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3334444444444444444444444433333333
No 95
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.91 E-value=0.82 Score=49.15 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 207 LDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNL 259 (748)
Q Consensus 207 l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~~~~~~~~l~~~ 259 (748)
+......+..++..+..+...+..+...-.+....+..+...|..+.+.+...
T Consensus 106 i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n 158 (570)
T COG4477 106 IDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLAN 158 (570)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444555555555555555555666666666666666666543
No 96
>PRK09039 hypothetical protein; Validated
Probab=96.89 E-value=0.26 Score=51.90 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=11.0
Q ss_pred HHHHHHHHHhHhhHHHHHHHH
Q 047747 527 TAQINDLLADLDSLHNEKSKL 547 (748)
Q Consensus 527 ~~~i~~l~~el~~l~~~~~~l 547 (748)
..++.....++..++.++..+
T Consensus 45 s~~i~~~~~eL~~L~~qIa~L 65 (343)
T PRK09039 45 SREISGKDSALDRLNSQIAEL 65 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 444555555555555555554
No 97
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.84 E-value=0.00028 Score=82.34 Aligned_cols=19 Identities=5% Similarity=0.211 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 047747 62 LIEGFHSQYQSLYAQYDNL 80 (748)
Q Consensus 62 ~~~e~~~~~~~l~~~~~~~ 80 (748)
.+..|...|+.+..-|...
T Consensus 68 r~~NLk~l~~~i~~yy~e~ 86 (713)
T PF05622_consen 68 RVSNLKKLLRNIKSYYQEE 86 (713)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655543
No 98
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.80 E-value=0.34 Score=43.12 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 450 TGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDL 494 (748)
Q Consensus 450 ~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l 494 (748)
..|..++..+...+..+..++..++.+...+...+...+.++..+
T Consensus 55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 55 ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 99
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.80 E-value=1.6 Score=50.77 Aligned_cols=77 Identities=13% Similarity=0.248 Sum_probs=34.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047747 351 RGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQ----QAQNLIQDLMAESSQLKEKMVEKEREVSS 426 (748)
Q Consensus 351 ~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~----~l~~~i~~l~~~~~~l~~~l~~le~e~~~ 426 (748)
...+..++.++..+......+...+..+...++.+..++..+...+. .+..+...+..++..+...+......+..
T Consensus 208 ~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~ 287 (650)
T TIGR03185 208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRE 287 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433332 22233444455555555555544444444
Q ss_pred H
Q 047747 427 L 427 (748)
Q Consensus 427 l 427 (748)
+
T Consensus 288 l 288 (650)
T TIGR03185 288 L 288 (650)
T ss_pred H
Confidence 3
No 100
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=1.3 Score=49.37 Aligned_cols=25 Identities=20% Similarity=-0.040 Sum_probs=17.8
Q ss_pred hccCCCCceeeeccCcchhhccccc
Q 047747 720 RNGAGAGSCLVLHSPYSKIILMDEK 744 (748)
Q Consensus 720 l~~lG~~~~~~~~~~~~~~~~~~~~ 744 (748)
|-.+..++-+-|.|..--||++++.
T Consensus 699 ly~FeaRs~dEisf~pGDII~V~es 723 (1118)
T KOG1029|consen 699 LYPFEARSHDEISFEPGDIIIVFES 723 (1118)
T ss_pred ecccccCCcccccccCCCEEEEehh
Confidence 4445667777788888888888764
No 101
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.66 E-value=0.89 Score=45.99 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=12.8
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHhhhh
Q 047747 529 QINDLLADLDSLHNEKSKLEEHMVFK 554 (748)
Q Consensus 529 ~i~~l~~el~~l~~~~~~l~~~l~~l 554 (748)
.+..+...+..++.+...|..+...+
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L 186 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQL 186 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555554444333
No 102
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.66 E-value=1.4 Score=48.42 Aligned_cols=17 Identities=6% Similarity=0.171 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhHHHHH
Q 047747 677 LEKTLTERGSELSSLQE 693 (748)
Q Consensus 677 le~~~~~~~~~l~~l~~ 693 (748)
+...+..+....+.+..
T Consensus 909 ~~~~ledL~qRy~a~Lq 925 (961)
T KOG4673|consen 909 IKAELEDLRQRYAAALQ 925 (961)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 103
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.61 E-value=1.6 Score=48.19 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 047747 196 LTVENAELNQKLDAAGKIEAELNREVSDMKRQL 228 (748)
Q Consensus 196 l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l 228 (748)
....+..+..++..+.++.+.+..++..++..+
T Consensus 407 ~~QRva~lEkKvqa~~kERDalr~e~kslk~el 439 (961)
T KOG4673|consen 407 YHQRVATLEKKVQALTKERDALRREQKSLKKEL 439 (961)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555554
No 104
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.58 E-value=0.034 Score=53.52 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHh
Q 047747 60 VELIEGFHSQYQSLYAQYDNLRGEL 84 (748)
Q Consensus 60 ~~~~~e~~~~~~~l~~~~~~~~~~~ 84 (748)
.....+|+-.|..|.++-+.+....
T Consensus 16 e~~~~~li~ay~~L~d~~~~l~~~~ 40 (194)
T PF08614_consen 16 EKAFAELIDAYNRLADRTSLLKAEN 40 (194)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 3455567777777777766665443
No 105
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.56 E-value=1.1 Score=45.81 Aligned_cols=136 Identities=18% Similarity=0.194 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhhh-hhHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 047747 519 SLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKD-DEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREI 597 (748)
Q Consensus 519 ~~~~i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l~-~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~ 597 (748)
+..++..+...+.+++.++.-+...+........... ...-.....+-.++..++.++..+...+..+..+...+..+.
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ER 163 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTER 163 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444332222222 111133344445555556666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 047747 598 SEYIIEVQILKEEIVNKT-------EVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMR 654 (748)
Q Consensus 598 ~~~~~~l~~l~~~l~~~~-------~~~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~ 654 (748)
..+......+..++.-+- ..++.+..+..-+..++..++.+..-+..-+...+.-+.
T Consensus 164 D~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 164 DAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666554421 124455555555566666665555555554444444333
No 106
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.54 E-value=1.5 Score=47.20 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=9.9
Q ss_pred hhHHHHHHhhhHhhhHH
Q 047747 275 AVNAELKQKLSIAGELE 291 (748)
Q Consensus 275 ~~~~~Lk~~~~~~gr~t 291 (748)
.+|-+|++.. -+|++
T Consensus 17 ~~g~~lRkk~--~~rI~ 31 (570)
T COG4477 17 AVGYLLRKKN--YQRID 31 (570)
T ss_pred HHHHHHHHhH--HHHHH
Confidence 3456777777 66665
No 107
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.44 E-value=0.77 Score=42.59 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHH
Q 047747 618 QQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSL 691 (748)
Q Consensus 618 ~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l 691 (748)
+..+...-..+....+.....+..+...+.+...+-.|.+..+..|...+..++..+.............++..
T Consensus 125 lk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 125 LKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333444444444455555555555555555555555555555555555555554444444444444433
No 108
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.43 E-value=0.94 Score=43.48 Aligned_cols=36 Identities=11% Similarity=-0.001 Sum_probs=14.2
Q ss_pred HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047747 449 VTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEEN 484 (748)
Q Consensus 449 l~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~ 484 (748)
+..+..+.+.+...+..++..+..+...+..++..+
T Consensus 71 i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi 106 (207)
T PF05010_consen 71 IQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVI 106 (207)
T ss_pred HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444433333333
No 109
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.42 E-value=1.4 Score=45.24 Aligned_cols=6 Identities=17% Similarity=0.030 Sum_probs=3.0
Q ss_pred HhHHHH
Q 047747 334 DQLNEE 339 (748)
Q Consensus 334 g~l~~~ 339 (748)
|.++..
T Consensus 51 G~liSA 56 (499)
T COG4372 51 GMLISA 56 (499)
T ss_pred cchhhH
Confidence 555543
No 110
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.38 E-value=1.4 Score=45.07 Aligned_cols=27 Identities=11% Similarity=0.168 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 047747 401 NLIQDLMAESSQLKEKMVEKEREVSSL 427 (748)
Q Consensus 401 ~~i~~l~~~~~~l~~~l~~le~e~~~l 427 (748)
-+++++..++..+..++...+.+....
T Consensus 74 fqlddi~~qlr~~rtel~~a~~~k~~~ 100 (499)
T COG4372 74 FQLDDIRPQLRALRTELGTAQGEKRAA 100 (499)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555444443333
No 111
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.35 E-value=2.4 Score=47.29 Aligned_cols=33 Identities=15% Similarity=0.028 Sum_probs=18.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhhh
Q 047747 666 EKLGLLDGIFELEKTLTERGSELSSLQEKHINV 698 (748)
Q Consensus 666 ~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~~ 698 (748)
++..+...+..++..+.+++.-|..-...|...
T Consensus 601 ev~qlk~ev~s~ekr~~rlk~vF~~ki~eFr~a 633 (716)
T KOG4593|consen 601 EVAQLKKEVESAEKRNQRLKEVFASKIQEFRDA 633 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666666666665555555555443
No 112
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.32 E-value=2.8 Score=47.86 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhhHHHhhh
Q 047747 65 GFHSQYQSLYAQYDNLRGELKK 86 (748)
Q Consensus 65 e~~~~~~~l~~~~~~~~~~~~~ 86 (748)
++-+.|.-|.+.|..+...+.+
T Consensus 90 ~l~r~w~~ls~~Yg~lI~~Y~k 111 (980)
T KOG0980|consen 90 QLGRMWGHLSDGYGPLIRAYVK 111 (980)
T ss_pred HHHHHhccccccchHHHHHHHH
Confidence 3344444444445444444443
No 113
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.30 E-value=1.9 Score=45.68 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047747 466 MVVQIDSKAAAAKQLEEENLQL 487 (748)
Q Consensus 466 l~~~l~~~~~~~~~l~~~~~~l 487 (748)
+...+......+..+...|.++
T Consensus 78 ~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 78 LEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHhHHHHHHhhHHHH
Confidence 3333333333333333333333
No 114
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.19 E-value=3.6 Score=47.83 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 047747 624 EIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEG 660 (748)
Q Consensus 624 ~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~ 660 (748)
.+..+...+..+...+..+..++..++..+..++.++
T Consensus 429 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 429 ELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 115
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.03 E-value=1.9 Score=43.08 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047747 565 LMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGN 644 (748)
Q Consensus 565 l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~~ 644 (748)
+...+...+..+..+...+......+.....-++.++..+......+..+..-+..-...+.....
T Consensus 149 LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~-------------- 214 (305)
T PF14915_consen 149 LSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIG-------------- 214 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--------------
Confidence 333444444444444444444444444444444444444444444444432222222222222222
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 047747 645 QKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKH 695 (748)
Q Consensus 645 e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l 695 (748)
.-..+++++..+..+..-|+.++.+.......-+..+..++..|..+...+
T Consensus 215 Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L 265 (305)
T PF14915_consen 215 KQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKL 265 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 223334444444444444444444444444444444444444444444443
No 116
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.03 E-value=3.2 Score=45.75 Aligned_cols=29 Identities=17% Similarity=-0.008 Sum_probs=11.4
Q ss_pred HHHHHhhcchHhhhccCCCCceeeeccCc
Q 047747 707 TAMAAQASLPQISRNGAGAGSCLVLHSPY 735 (748)
Q Consensus 707 ~~l~~~i~~Lk~~l~~lG~~~~~~~~~~~ 735 (748)
..+...+...+.-+.++..+-..+..+|+
T Consensus 414 ~el~~~~~~~ke~i~klE~dl~~~~~~~~ 442 (629)
T KOG0963|consen 414 EELEAKATEQKELIAKLEQDLLKVQVSPP 442 (629)
T ss_pred hhhHHHHHHHHHHHHHHHhhHhhcccCCC
Confidence 33444444444444444333333333333
No 117
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.03 E-value=1.2 Score=46.79 Aligned_cols=58 Identities=17% Similarity=0.332 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 441 QIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLT 498 (748)
Q Consensus 441 ~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l 498 (748)
.+..++.++..+...+...+..+..++.++..+...+..+......+..++..++...
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555554444444444444444444444433
No 118
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.99 E-value=5.1 Score=47.71 Aligned_cols=8 Identities=0% Similarity=0.185 Sum_probs=3.9
Q ss_pred cccccccc
Q 047747 6 FRESIKSF 13 (748)
Q Consensus 6 ~~~~~~~~ 13 (748)
.+..--||
T Consensus 258 yG~ecDwW 265 (1317)
T KOG0612|consen 258 YGRECDWW 265 (1317)
T ss_pred cCCccchh
Confidence 34444566
No 119
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.90 E-value=3.6 Score=45.31 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q 047747 519 SLSRIENLTAQINDLLADLDSLHNEKSKLEEHM 551 (748)
Q Consensus 519 ~~~~i~~l~~~i~~l~~el~~l~~~~~~l~~~l 551 (748)
+...+.....+|..+..++......+.++..++
T Consensus 308 ~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL 340 (629)
T KOG0963|consen 308 LVEEREKHKAQISALEKELKAKISELEELKEKL 340 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444433
No 120
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.89 E-value=1.7 Score=41.47 Aligned_cols=28 Identities=18% Similarity=0.487 Sum_probs=13.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 047747 346 ELETLRGKISNMEQQLESSKQEVSDLSQ 373 (748)
Q Consensus 346 ei~~l~~~l~~le~~l~~~~~~l~~l~~ 373 (748)
.|..|..++..+...+..+..+..-|..
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~ 40 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQ 40 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444444433
No 121
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.79 E-value=6.8 Score=47.62 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 128 KTTDGMKQELDAATLEVSELKRRMT 152 (748)
Q Consensus 128 ~~~~~lk~~l~~~~~ei~~l~~~l~ 152 (748)
..+..+......+...+..+...+.
T Consensus 171 ~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 171 KLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555554444
No 122
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.69 E-value=2.1 Score=41.10 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=20.9
Q ss_pred HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 448 QVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLT 498 (748)
Q Consensus 448 el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l 498 (748)
.+..++.....+......+..-+..+...-..|...+.++...+...+..+
T Consensus 84 dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry 134 (207)
T PF05010_consen 84 DLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRY 134 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444433444444444444444443333
No 123
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.60 E-value=7.8 Score=46.99 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=42.5
Q ss_pred CCCCccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 117 NKNGELE-SEYQKTTDGMKQELDAATLEVSELKRRMTATSEEK---EALNLEYQSALSRIQEAGELIRNLKLEAESLNTE 192 (748)
Q Consensus 117 ~~~~~~~-~~~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~ek---e~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~ 192 (748)
.|+..|. ..|.+....++.-......++...+..+..+..-+ ..+...++.....+.....+...+..++......
T Consensus 173 kfD~IF~~tky~KAld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~ 252 (1294)
T KOG0962|consen 173 KFDDIFSATKYTKALDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAK 252 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4444444 45666666666665555566666666665554433 3333334444444444444444444444444444
Q ss_pred HhHHHHH
Q 047747 193 KLKLTVE 199 (748)
Q Consensus 193 ~~~l~~e 199 (748)
+..+...
T Consensus 253 i~ei~~~ 259 (1294)
T KOG0962|consen 253 IEEIEKS 259 (1294)
T ss_pred HHHHHHH
Confidence 4444443
No 124
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.50 E-value=6.9 Score=45.70 Aligned_cols=103 Identities=15% Similarity=0.175 Sum_probs=50.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 047747 126 YQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQ 205 (748)
Q Consensus 126 ~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~ 205 (748)
|...++.++.++.++..++.++......+..++..+..++......+.+....+...-..+...+..+..+...+..+..
T Consensus 253 ~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~ 332 (1072)
T KOG0979|consen 253 YKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKK 332 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666666665555555555555555444444444444444444444444444444444
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 047747 206 KLDAAGKIEAELNREVSDMKRQL 228 (748)
Q Consensus 206 ~l~~~~~~~~~l~~~l~~l~~~l 228 (748)
.-......+..+...+..++..+
T Consensus 333 ~~~~rq~~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 333 AAEKRQKRIEKAKKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333333333333333333
No 125
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.39 E-value=6 Score=44.30 Aligned_cols=14 Identities=7% Similarity=0.062 Sum_probs=7.4
Q ss_pred HHHHHHhhcchHhh
Q 047747 706 ITAMAAQASLPQIS 719 (748)
Q Consensus 706 ~~~l~~~i~~Lk~~ 719 (748)
+..|...+..|+..
T Consensus 561 ~e~LqaE~~~lk~~ 574 (716)
T KOG4593|consen 561 LEELQAELERLKER 574 (716)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555553
No 126
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.25 E-value=4.7 Score=45.36 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=10.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 047747 352 GKISNMEQQLESSKQEVSDLS 372 (748)
Q Consensus 352 ~~l~~le~~l~~~~~~l~~l~ 372 (748)
.++..++.++..++..+..+.
T Consensus 168 ~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 168 EQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555444444443
No 127
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.23 E-value=3.8 Score=42.38 Aligned_cols=57 Identities=11% Similarity=0.161 Sum_probs=27.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 442 IKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLT 498 (748)
Q Consensus 442 ~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l 498 (748)
+..++..+.....++......+..++.++..+...+........++...+..++..+
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444555445555444444444544544444444443
No 128
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.84 E-value=6.4 Score=41.66 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=14.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHHHHH
Q 047747 441 QIKELQAQVTGLELELESLQAHNRDMVVQI 470 (748)
Q Consensus 441 ~~~~~e~el~~l~~~~~~l~~~l~~l~~~l 470 (748)
++....++...|..++..+..+...|...+
T Consensus 369 ~fe~mn~Ere~L~reL~~i~~~~~~L~k~V 398 (622)
T COG5185 369 QFELMNQEREKLTRELDKINIQSDKLTKSV 398 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 344444444455555554444444444443
No 129
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.09 E-value=8.9 Score=40.22 Aligned_cols=15 Identities=7% Similarity=0.189 Sum_probs=8.7
Q ss_pred HHHHHHHHhhcchHh
Q 047747 704 AQITAMAAQASLPQI 718 (748)
Q Consensus 704 ~~~~~l~~~i~~Lk~ 718 (748)
.++..|+..+..|+.
T Consensus 276 ~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 276 SEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355566666666655
No 130
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.80 E-value=14 Score=41.53 Aligned_cols=33 Identities=9% Similarity=0.040 Sum_probs=13.8
Q ss_pred HHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHH
Q 047747 651 EQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTE 683 (748)
Q Consensus 651 ~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~ 683 (748)
+.+..++..+.+.+.+..+..-.+..++.+..+
T Consensus 589 E~L~~~E~rLNeARREHtKaVVsLRQ~qrqa~r 621 (739)
T PF07111_consen 589 EQLSEMEKRLNEARREHTKAVVSLRQIQRQAAR 621 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333334444444433
No 131
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.80 E-value=7.4 Score=38.23 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=28.1
Q ss_pred HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 047747 448 QVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTT 508 (748)
Q Consensus 448 el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l 508 (748)
+...|-.....+......+..++......+.-+..++......+..++..+..+..++...
T Consensus 68 Enq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 68 ENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred hhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444455555555555555555555444444433
No 132
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.77 E-value=0.9 Score=43.69 Aligned_cols=71 Identities=18% Similarity=0.352 Sum_probs=10.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 347 LETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKM 417 (748)
Q Consensus 347 i~~l~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l 417 (748)
+..+...+..+..++..+......+...+..+...+..++..+......+..+...+..+..++..+...+
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l 139 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEEL 139 (194)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444343333344444444443333333333333
No 133
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.74 E-value=17 Score=42.35 Aligned_cols=107 Identities=18% Similarity=0.105 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHH---H--HHhh
Q 047747 623 EEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQ---E--KHIN 697 (748)
Q Consensus 623 ~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~---~--~l~~ 697 (748)
.++.........+...+..+..+...+...+..++.++..-+....++......++.++.+....-.... . ++..
T Consensus 652 ~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kq 731 (769)
T PF05911_consen 652 TQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQ 731 (769)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccch
Confidence 3344444444444444444555555555555555555555555555555555566555555533221111 1 1111
Q ss_pred h-h-hhhhHHHHHHHHhhcchHhhhccCCCCcee
Q 047747 698 V-E-NKASAQITAMAAQASLPQISRNGAGAGSCL 729 (748)
Q Consensus 698 ~-~-~~a~~~~~~l~~~i~~Lk~~l~~lG~~~~~ 729 (748)
. + ..|.+.+.+=+..|..|-++|.++.|-...
T Consensus 732 e~EiaaAA~KLAECQeTI~sLGkQLksLa~~~d~ 765 (769)
T PF05911_consen 732 EKEIAAAAEKLAECQETIASLGKQLKSLATPEDF 765 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence 1 1 456778888899999999999988765443
No 134
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.56 E-value=6.7 Score=37.04 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=14.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 573 QQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEE 610 (748)
Q Consensus 573 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 610 (748)
+.+...+...+..-..++..+..........+...+..
T Consensus 48 kien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keK 85 (177)
T PF13870_consen 48 KIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEK 85 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 135
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.52 E-value=5.5 Score=38.16 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 132 GMKQELDAATLEVSELKRRMTATSEEKEALNLEYQS 167 (748)
Q Consensus 132 ~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~ 167 (748)
.....+.....++..+...+..+..+...+...+..
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~ 120 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQE 120 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444433333
No 136
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.40 E-value=4.4 Score=39.72 Aligned_cols=62 Identities=16% Similarity=0.054 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHH
Q 047747 622 LEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTE 683 (748)
Q Consensus 622 ~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~ 683 (748)
..+...+....+.++.....+..++.-.+..+.+++.++......++.+...+..+...+.+
T Consensus 66 kREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 66 KRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444444444444443
No 137
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.15 E-value=18 Score=40.69 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 047747 522 RIENLTAQINDLLADLDSLHNEKSKLEEH 550 (748)
Q Consensus 522 ~i~~l~~~i~~l~~el~~l~~~~~~l~~~ 550 (748)
.+..+...+...+.++...+..+..+...
T Consensus 205 ~l~~l~~~l~~~~~~l~~~~a~~~~l~~~ 233 (498)
T TIGR03007 205 EISEAQEELEAARLELNEAIAQRDALKRQ 233 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 138
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=92.95 E-value=19 Score=40.47 Aligned_cols=8 Identities=25% Similarity=0.343 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 047747 649 LEEQMRLK 656 (748)
Q Consensus 649 l~~~~~~l 656 (748)
++.++..+
T Consensus 390 lE~rl~~l 397 (511)
T PF09787_consen 390 LESRLTQL 397 (511)
T ss_pred HHHHHhhc
Confidence 33333333
No 139
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.42 E-value=6.8 Score=34.06 Aligned_cols=8 Identities=25% Similarity=0.310 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 047747 484 NLQLQARI 491 (748)
Q Consensus 484 ~~~l~~~l 491 (748)
+.+++..+
T Consensus 98 veEL~~Dv 105 (120)
T PF12325_consen 98 VEELRADV 105 (120)
T ss_pred HHHHHHHH
Confidence 33333333
No 140
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.36 E-value=33 Score=41.79 Aligned_cols=21 Identities=5% Similarity=0.180 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhhHHHhhh
Q 047747 66 FHSQYQSLYAQYDNLRGELKK 86 (748)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~~ 86 (748)
|...|..+++.+..+......
T Consensus 169 ~e~~~~~l~e~~~~~~~~~e~ 189 (908)
T COG0419 169 YEKLSELLKEVIKEAKAKIEE 189 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666655544443
No 141
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.28 E-value=20 Score=39.15 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=5.9
Q ss_pred HHhHHHHHHHHHHHH
Q 047747 353 KISNMEQQLESSKQE 367 (748)
Q Consensus 353 ~l~~le~~l~~~~~~ 367 (748)
++..++.++..+...
T Consensus 82 ~l~~l~~~~~~l~a~ 96 (423)
T TIGR01843 82 DAAELESQVLRLEAE 96 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444433333
No 142
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.08 E-value=20 Score=38.66 Aligned_cols=101 Identities=12% Similarity=0.117 Sum_probs=53.8
Q ss_pred HhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 562 VKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVAS 641 (748)
Q Consensus 562 ~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 641 (748)
...+..++...+.++..+.+.+.....++.....+...+..++..+...+..+.-..+.+..-+......-..+..+..+
T Consensus 200 y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~E 279 (596)
T KOG4360|consen 200 YGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEE 279 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33455555666666666666666665555555555555555555555555444333333333444444444555555555
Q ss_pred hhhhHHHHHHHHHHHHHhhhh
Q 047747 642 LGNQKSDLEEQMRLKIEEGFH 662 (748)
Q Consensus 642 l~~e~~~l~~~~~~le~e~~~ 662 (748)
++..|.++...+...+.++..
T Consensus 280 leDkyAE~m~~~~EaeeELk~ 300 (596)
T KOG4360|consen 280 LEDKYAECMQMLHEAEEELKC 300 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555554443
No 143
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.04 E-value=12 Score=36.06 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=17.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 047747 346 ELETLRGKISNMEQQLESSKQEVSDLSQNLTATEEE 381 (748)
Q Consensus 346 ei~~l~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~ 381 (748)
-|..|..++..+..........+..+..+...+...
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~ep 63 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEP 63 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345555555555555554444444444443333333
No 144
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.87 E-value=17 Score=37.42 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047747 388 KISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLV 428 (748)
Q Consensus 388 ~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~ 428 (748)
.+.-+..++...+.+.+.++.-++.++.....+......+.
T Consensus 10 AL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~ 50 (319)
T PF09789_consen 10 ALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELI 50 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666666666666666666666666555544443
No 145
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=91.53 E-value=16 Score=38.94 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhhcc
Q 047747 33 IEDKFKKILKLVQD 46 (748)
Q Consensus 33 ~~~~~~~~~~~~~~ 46 (748)
=|+.|..-|||...
T Consensus 27 rd~nv~eyLkl~~~ 40 (395)
T PF10267_consen 27 RDENVAEYLKLASN 40 (395)
T ss_pred HHhhHHHHHHHhhh
Confidence 45666777777665
No 146
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.48 E-value=21 Score=37.79 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=12.7
Q ss_pred HHHHhhHHHHHHHHHHhHHHHHHHHHH
Q 047747 446 QAQVTGLELELESLQAHNRDMVVQIDS 472 (748)
Q Consensus 446 e~el~~l~~~~~~l~~~l~~l~~~l~~ 472 (748)
...+++|...+......+..+...++.
T Consensus 292 eayLaKL~~~l~~~~~~~~~ltqqwed 318 (521)
T KOG1937|consen 292 EAYLAKLMGKLAELNKQMEELTQQWED 318 (521)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455444444444444444
No 147
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.48 E-value=37 Score=40.47 Aligned_cols=27 Identities=7% Similarity=0.219 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHH
Q 047747 523 IENLTAQINDLLADLDSLHNEKSKLEE 549 (748)
Q Consensus 523 i~~l~~~i~~l~~el~~l~~~~~~l~~ 549 (748)
+..+..++...+.+....+.....+..
T Consensus 239 L~~l~~ql~~a~~~~~~a~a~~~~l~~ 265 (754)
T TIGR01005 239 LAELNTELSRARANRAAAEGTADSVKK 265 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 148
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.43 E-value=29 Score=39.21 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=27.0
Q ss_pred HHHHHHHhhHHhHHHHHHH---hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHhH
Q 047747 324 KIAEDLRNSADQLNEEKLV---LGKELETLRGKISNMEQQLESSKQEVSDLSQNLTA 377 (748)
Q Consensus 324 ~~Vt~L~~l~g~l~~~~g~---~~~ei~~l~~~l~~le~~l~~~~~~l~~l~~~l~~ 377 (748)
..|..|+.-.|+.+.+... ...+-..|...+..|+.+.+.+...+.-+.-.+..
T Consensus 218 tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqS 274 (739)
T PF07111_consen 218 TLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQS 274 (739)
T ss_pred HHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667776643321 12333445555555555555555444444444333
No 149
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.42 E-value=4.6 Score=42.02 Aligned_cols=76 Identities=26% Similarity=0.363 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 170 SRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTA 245 (748)
Q Consensus 170 ~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~ 245 (748)
..+..++.+...+..++..++.+...+..++..+......+.............+.-.+.....+...+..++.-.
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444444444444444444444444444444333
No 150
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.32 E-value=25 Score=38.26 Aligned_cols=113 Identities=17% Similarity=0.244 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhH-
Q 047747 439 LAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANES- 517 (748)
Q Consensus 439 ~~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l~~~l~~~~~- 517 (748)
...|...+.+...|...+..++..+.+....+-.++.....|....-....++..++.-+.....++..+..++.....
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~ 409 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNI 409 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666777777777666666666666666666666666666666666666666666666666666553322
Q ss_pred --------hHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q 047747 518 --------ESLSRIENLTAQINDLLADLDSLHNEKSKLEEHM 551 (748)
Q Consensus 518 --------~~~~~i~~l~~~i~~l~~el~~l~~~~~~l~~~l 551 (748)
+....+..+...+...+.++....+....+-.-+
T Consensus 410 ~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeil 451 (654)
T KOG4809|consen 410 EDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEIL 451 (654)
T ss_pred hHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1255666677777777777666666666554333
No 151
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=90.94 E-value=24 Score=37.38 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 137 LDAATLEVSELKRRMTATSEEKEA 160 (748)
Q Consensus 137 l~~~~~ei~~l~~~l~~l~~eke~ 160 (748)
+......+..++..+...+.....
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~ 33 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEE 33 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554444333
No 152
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.93 E-value=10 Score=33.03 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=7.1
Q ss_pred HHHHHHHHhHHHHHHHH
Q 047747 347 LETLRGKISNMEQQLES 363 (748)
Q Consensus 347 i~~l~~~l~~le~~l~~ 363 (748)
+..+...+..++.++..
T Consensus 18 ve~L~s~lr~~E~E~~~ 34 (120)
T PF12325_consen 18 VERLQSQLRRLEGELAS 34 (120)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 153
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.74 E-value=14 Score=36.38 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 047747 171 RIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEA 215 (748)
Q Consensus 171 ~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~ 215 (748)
.+.++..+++.|..+...+...+.....++..+...+..++....
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455544444444444444444444444333333333333
No 154
>PF13514 AAA_27: AAA domain
Probab=90.67 E-value=54 Score=40.99 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 126 YQKTTDGMKQELDAATLEVSELKRRMTATSEEKEA 160 (748)
Q Consensus 126 ~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~ 160 (748)
....+..+..++..+...+..+...+..+..+.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 274 (1111)
T PF13514_consen 240 GAERLEQLEEELAEAQAQLERLQEELAQLEEELDA 274 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555556555565555555555554443
No 155
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=90.64 E-value=0.54 Score=47.87 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 047747 345 KELETLRGKISNMEQQLESSKQEVSDL 371 (748)
Q Consensus 345 ~ei~~l~~~l~~le~~l~~~~~~l~~l 371 (748)
+.+..+.+++..|+.....+...+..+
T Consensus 28 GDLs~I~eRLsaLEssv~sL~~SVs~l 54 (326)
T PF04582_consen 28 GDLSPIRERLSALESSVASLSDSVSSL 54 (326)
T ss_dssp ---------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333333
No 156
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.39 E-value=30 Score=37.63 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcc-CCCCCCCCCCCCCCCCCCCCccccccCCCCCccc--hhhhhhHHHH
Q 047747 57 EPLVELIEGFHSQYQSLYAQYDNLRGELKKKIH-GKKENETYSSSSSDSDSDSDHSSKNKSNKNGELE--SEYQKTTDGM 133 (748)
Q Consensus 57 ~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 133 (748)
|....-|+.|.-....|.+-|+..+.+.-++.. |. . .+. ......+..+
T Consensus 4 ~~aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL--------------------~--------lLeeK~~Lkqq~eEl 55 (772)
T KOG0999|consen 4 PMAEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGL--------------------E--------LLEEKEDLKQQLEEL 55 (772)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------H--------HHHHHHHHHHHHHHH
Confidence 445555666666666777777777776655431 11 0 000 1123334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 047747 134 KQELDAATLEVSELKRRMTATSEEKEAL--------NLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQ 205 (748)
Q Consensus 134 k~~l~~~~~ei~~l~~~l~~l~~eke~l--------~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~ 205 (748)
...++.+..+++.++..+.......... ..-++....+-..+-..|-+++.+++.+...+...+.+...+..
T Consensus 56 eaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~ 135 (772)
T KOG0999|consen 56 EAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEK 135 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555554444433221111 11122222222333344555555555555555555555555555
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 206 KLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEY 242 (748)
Q Consensus 206 ~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l 242 (748)
....+.......+.+...++..+....-.-..+-..|
T Consensus 136 ~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseY 172 (772)
T KOG0999|consen 136 VHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEY 172 (772)
T ss_pred HHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444444444444455555444433333333333
No 157
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=90.26 E-value=0.019 Score=50.57 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=29.1
Q ss_pred HHHHhHHHHHhhhhhH--------------------HHHHHhhhHhhhHHHHHHHHHHHhHh
Q 047747 262 EAESLNNDMLEGLAVN--------------------AELKQKLSIAGELEAELNHRLEDISR 303 (748)
Q Consensus 262 el~~~~~~~~~ai~~~--------------------~~Lk~~~~~~gr~t~~~~l~L~~i~~ 303 (748)
+++.++++|..||+.+ .++++.+ .||+| |+|++.+..
T Consensus 10 dli~v~~~~~~Ave~~LG~~l~~iVV~~~~~a~~~i~~l~~~~--~gr~~---~i~l~~~~~ 66 (120)
T PF06470_consen 10 DLIEVDPKYEKAVEAALGGRLQAIVVEDEETAKKIIEFLKENK--LGRAT---FIPLDKIRS 66 (120)
T ss_dssp GSEEESGGGHHHHHHHHGGGGGSEEESSHHHHHHHHHHHHHTT--SCEEE---EEETTTTGG
T ss_pred hceecCHHHHHHHHHHHHHhhceEEECcHHHHHHHHHHHhhcc--CCeEE---EEECccccc
Confidence 4556677788887763 7888877 99999 999998764
No 158
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.69 E-value=33 Score=37.06 Aligned_cols=33 Identities=24% Similarity=0.192 Sum_probs=12.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 579 LRGQKAVLEVQLEEKTREISEYIIEVQILKEEI 611 (748)
Q Consensus 579 l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l 611 (748)
.+.++..+...+..+..++.....++..+...|
T Consensus 210 tN~q~~s~~eel~~kt~el~~q~Ee~skLlsql 242 (596)
T KOG4360|consen 210 TNTQARSGQEELQSKTKELSRQQEENSKLLSQL 242 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 159
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=89.46 E-value=19 Score=33.96 Aligned_cols=46 Identities=11% Similarity=0.134 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 440 AQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENL 485 (748)
Q Consensus 440 ~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~ 485 (748)
..|.+++-+...+...+++-..++..+.......-..+...+..+.
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~ 87 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLH 87 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444444444444443333333333333333
No 160
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=89.44 E-value=27 Score=35.86 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 130 TDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAG 176 (748)
Q Consensus 130 ~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le 176 (748)
+..++..+...+.......-..+.|-.++..+.=++..+...+.+++
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~e 125 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELE 125 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444444444444444444444444333333333333
No 161
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.36 E-value=15 Score=36.08 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 047747 150 RMTATSEEKEALN 162 (748)
Q Consensus 150 ~l~~l~~eke~l~ 162 (748)
-+.++..+++.|.
T Consensus 33 ~L~e~~kE~~~L~ 45 (230)
T PF10146_consen 33 CLEEYRKEMEELL 45 (230)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 162
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=89.24 E-value=26 Score=35.29 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHhhhhHHH
Q 047747 645 QKSDLEEQMRLKIEEGFHLTE 665 (748)
Q Consensus 645 e~~~l~~~~~~le~e~~~l~~ 665 (748)
.+..|+.-++.+..+..++..
T Consensus 300 kiq~LekLcRALq~ernel~~ 320 (391)
T KOG1850|consen 300 KIQRLEKLCRALQTERNELNK 320 (391)
T ss_pred HHHHHHHHHHHHHhccccHHH
Confidence 333333333333333333333
No 163
>PF13514 AAA_27: AAA domain
Probab=88.74 E-value=74 Score=39.80 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=36.5
Q ss_pred chhhhhhHHHHHHHHHHHHHhhccCch-hhhccChhh--HHHHHHHHHHHHHHHHHHHhhhHHHhhh
Q 047747 23 DEQLKGNKIEIEDKFKKILKLVQDKDL-QEKDGIKEP--LVELIEGFHSQYQSLYAQYDNLRGELKK 86 (748)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~e~~~~~~~l~~~~~~~~~~~~~ 86 (748)
-+.+...+..+...+..++.-|+.+.+ +.-..+.|. ....+..+-..+..+...+......+..
T Consensus 305 l~~~~~e~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~ 371 (1111)
T PF13514_consen 305 LPRLEAELAELEAELRALLAQLGPDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEE 371 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888888888884423 222222222 3344555555566665555555554443
No 164
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=88.30 E-value=0.99 Score=46.04 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=16.9
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 445 LQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLE 495 (748)
Q Consensus 445 ~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~ 495 (748)
+...+......+..++..+..+...+..++..+....-.+.+++.++..++
T Consensus 103 lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 103 LSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 333333344444444444444444444444444444444444444444444
No 165
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.19 E-value=8.2 Score=36.56 Aligned_cols=7 Identities=14% Similarity=0.482 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 047747 71 QSLYAQY 77 (748)
Q Consensus 71 ~~l~~~~ 77 (748)
+-|++.|
T Consensus 72 ReLA~kf 78 (290)
T COG4026 72 RELAEKF 78 (290)
T ss_pred HHHHHHH
Confidence 3344433
No 166
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.12 E-value=19 Score=38.10 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=13.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 577 ESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIV 612 (748)
Q Consensus 577 ~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~ 612 (748)
..++.........+......+..+..+++..+.++.
T Consensus 283 s~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 283 SEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333344444444333
No 167
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=87.77 E-value=56 Score=37.30 Aligned_cols=8 Identities=25% Similarity=0.555 Sum_probs=3.9
Q ss_pred hhhccccc
Q 047747 737 KIILMDEK 744 (748)
Q Consensus 737 ~~~~~~~~ 744 (748)
.++++||.
T Consensus 464 ~~lilDEp 471 (563)
T TIGR00634 464 TTLIFDEV 471 (563)
T ss_pred CEEEEECC
Confidence 34555553
No 168
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.40 E-value=44 Score=35.61 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Q 047747 520 LSRIENLTAQINDLLADLDSLHNEKSKLEE 549 (748)
Q Consensus 520 ~~~i~~l~~~i~~l~~el~~l~~~~~~l~~ 549 (748)
...|.++...+.+...++..+..+-.+|..
T Consensus 388 tqrikEi~gniRKq~~DI~Kil~etreLqk 417 (521)
T KOG1937|consen 388 TQRIKEIDGNIRKQEQDIVKILEETRELQK 417 (521)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 169
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.38 E-value=16 Score=38.08 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 047747 175 AGELIRNLKLEAESLNTEKLKLTVE 199 (748)
Q Consensus 175 le~ei~~l~~~~~~l~~~~~~l~~e 199 (748)
+..++..+..+...+..++..+..+
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e 72 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKE 72 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 170
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=86.11 E-value=39 Score=33.71 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=4.7
Q ss_pred HhHhhHHHHHHHH
Q 047747 535 ADLDSLHNEKSKL 547 (748)
Q Consensus 535 ~el~~l~~~~~~l 547 (748)
.++..+.+.+...
T Consensus 88 ~ql~~l~akI~k~ 100 (258)
T PF15397_consen 88 QQLEQLDAKIQKT 100 (258)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 171
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.96 E-value=16 Score=35.21 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=21.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 124 SEYQKTTDGMKQELDAATLEVSELKRRMTATSEE 157 (748)
Q Consensus 124 ~~~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~e 157 (748)
..|...--.++..+..++.++..++.++..+..+
T Consensus 82 ~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 82 LKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4444444566666777777777777777665544
No 172
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.76 E-value=35 Score=32.91 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHHHhH
Q 047747 673 GIFELEKTLTERGSELS 689 (748)
Q Consensus 673 ~i~~le~~~~~~~~~l~ 689 (748)
.+..+...+......+.
T Consensus 151 Kl~~l~~~lE~keaqL~ 167 (201)
T PF13851_consen 151 KLQALSEQLEKKEAQLN 167 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 173
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=85.63 E-value=55 Score=35.05 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhhhccCCCCCC
Q 047747 61 ELIEGFHSQYQSLYAQYDNLRGELKKKIHGKKENE 95 (748)
Q Consensus 61 ~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (748)
.+-+++|.-.+.|-. |+-.|.+.+.+..-|.+.
T Consensus 51 Tlsed~ysTldnll~--D~ni~ny~qnvl~qP~dT 83 (527)
T PF15066_consen 51 TLSEDIYSTLDNLLG--DNNIGNYSQNVLIQPVDT 83 (527)
T ss_pred hhhHHHHhhhhhccC--CccccccchhcccCCCCc
Confidence 345566666555544 555555555544444444
No 174
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.62 E-value=50 Score=35.23 Aligned_cols=8 Identities=25% Similarity=0.218 Sum_probs=3.7
Q ss_pred HHHHHHhH
Q 047747 295 NHRLEDIS 302 (748)
Q Consensus 295 ~l~L~~i~ 302 (748)
..||+.|.
T Consensus 179 pVCLERMD 186 (493)
T KOG0804|consen 179 PVCLERMD 186 (493)
T ss_pred chhHhhcC
Confidence 34455444
No 175
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.47 E-value=12 Score=35.54 Aligned_cols=66 Identities=21% Similarity=0.287 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHH
Q 047747 619 QKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTER 684 (748)
Q Consensus 619 ~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~ 684 (748)
..+...++.+......+-.++..+..++.++++++..++.+...|...+..+......|.....++
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 333334444444444445555555555555555555555555555555544444444444444444
No 176
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.22 E-value=43 Score=33.47 Aligned_cols=97 Identities=20% Similarity=0.274 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 047747 142 LEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREV 221 (748)
Q Consensus 142 ~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l 221 (748)
.....+..++..++.+.......+......+..+......++.....|......+......+.............+..++
T Consensus 5 r~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~ 84 (246)
T PF00769_consen 5 REKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQEL 84 (246)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555555544444444444444444444334444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047747 222 SDMKRQLTARSEEKEAL 238 (748)
Q Consensus 222 ~~l~~~l~~l~~e~~~~ 238 (748)
......+..+.......
T Consensus 85 ~e~~~~i~~l~ee~~~k 101 (246)
T PF00769_consen 85 REAEAEIARLEEESERK 101 (246)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444433333333
No 177
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=84.95 E-value=17 Score=28.55 Aligned_cols=65 Identities=25% Similarity=0.247 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 174 EAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEAL 238 (748)
Q Consensus 174 ~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~ 238 (748)
.++..|..+-..+.-+..++.++......+......+......+..+...++.+....+..++.+
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444443
No 178
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=84.89 E-value=48 Score=33.76 Aligned_cols=11 Identities=18% Similarity=-0.091 Sum_probs=5.9
Q ss_pred HHHHHHHHhhHHhHH
Q 047747 323 EKIAEDLRNSADQLN 337 (748)
Q Consensus 323 ~~~Vt~L~~l~g~l~ 337 (748)
+.+|. ..|.++
T Consensus 46 f~~is----s~gwff 56 (401)
T PF06785_consen 46 FSIIS----SLGWFF 56 (401)
T ss_pred hHHHH----HhHHHH
Confidence 34555 556554
No 179
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=83.85 E-value=56 Score=33.68 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047747 132 GMKQELDAATLEVSELKRRMTA 153 (748)
Q Consensus 132 ~lk~~l~~~~~ei~~l~~~l~~ 153 (748)
.++..+..+..+...++.++..
T Consensus 24 ~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 24 ELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 180
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=83.37 E-value=43 Score=31.96 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 047747 410 SSQLKEKM 417 (748)
Q Consensus 410 ~~~l~~~l 417 (748)
+..+...+
T Consensus 89 l~~le~El 96 (202)
T PF06818_consen 89 LGQLEAEL 96 (202)
T ss_pred hhhhHHHH
Confidence 33333333
No 181
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.10 E-value=21 Score=28.09 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=5.4
Q ss_pred HhhhhHHHHHHhhhh
Q 047747 658 EEGFHLTEEKLGLLD 672 (748)
Q Consensus 658 ~e~~~l~~~~~~l~~ 672 (748)
.+...++.+...++.
T Consensus 53 ~en~qLk~E~~~Wqe 67 (79)
T PRK15422 53 RENNHLKEQQNGWQE 67 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 182
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.02 E-value=70 Score=34.18 Aligned_cols=6 Identities=17% Similarity=0.080 Sum_probs=2.1
Q ss_pred HHHHHH
Q 047747 148 KRRMTA 153 (748)
Q Consensus 148 ~~~l~~ 153 (748)
+..+..
T Consensus 353 k~~~e~ 358 (493)
T KOG0804|consen 353 KQYYEL 358 (493)
T ss_pred HHHHHH
Confidence 333333
No 183
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=82.82 E-value=54 Score=32.69 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=22.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 558 ASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEI 611 (748)
Q Consensus 558 ~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l 611 (748)
+...+......+..++..+......+..+..........+......+..+...+
T Consensus 83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L 136 (240)
T PF12795_consen 83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQL 136 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444444444443333
No 184
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=82.29 E-value=50 Score=32.84 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=25.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047747 573 QQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVN 613 (748)
Q Consensus 573 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~ 613 (748)
..-+..++.++......++....+|..+..++..+.+.+-+
T Consensus 67 EV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIE 107 (305)
T PF15290_consen 67 EVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIE 107 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666666666665533
No 185
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=80.91 E-value=36 Score=35.01 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=31.9
Q ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 193 KLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLK 260 (748)
Q Consensus 193 ~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~~~~~~~~l~~~~ 260 (748)
...+.-++..++..++.+...+..+++++......+..+...+..+..++..++..+......|..+|
T Consensus 107 k~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khG 174 (302)
T PF09738_consen 107 KSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHG 174 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 33333444444444444444444444444444444444555555555555555544444444444433
No 186
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=80.37 E-value=1e+02 Score=34.21 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=2.5
Q ss_pred HHhhHHH
Q 047747 448 QVTGLEL 454 (748)
Q Consensus 448 el~~l~~ 454 (748)
.+..+..
T Consensus 105 ~~~~~~~ 111 (457)
T TIGR01000 105 QLDNLKD 111 (457)
T ss_pred HHHHHHH
Confidence 3333333
No 187
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=79.97 E-value=1.9e+02 Score=37.08 Aligned_cols=451 Identities=15% Similarity=0.142 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhHHHH
Q 047747 127 QKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAG--------ELIRNLKLEAESLNTEKLKLTV 198 (748)
Q Consensus 127 ~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le--------~ei~~l~~~~~~l~~~~~~l~~ 198 (748)
...+..+..++..+..++......+..+......+..+...+...+..+. .++..+...+............
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~ 354 (1353)
T TIGR02680 275 QTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQ 354 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------
Q 047747 199 ENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKE------------------------------------------ 236 (748)
Q Consensus 199 el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~------------------------------------------ 236 (748)
.+......+....................+......+.
T Consensus 355 ~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~ 434 (1353)
T TIGR02680 355 AIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERAGLSPAHTAEPDAALAAQELQELGALDARRQDADRVI 434 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccchhhHHHHHHHHHHH
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhH--------------------------------
Q 047747 237 -------ALNLEYQTALSKIQEAEEIIRNLKLEAESLNNDMLEGLAVN-------------------------------- 277 (748)
Q Consensus 237 -------~~~~~l~e~~~~~~~~~~~l~~~~~el~~~~~~~~~ai~~~-------------------------------- 277 (748)
..-........++............++......+..+...+
T Consensus 435 ~~~~~~i~~L~~~~~~~e~a~~~~~~~~~~~~el~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (1353)
T TIGR02680 435 AQRSEQVALLRRRDDVADRAEATHAAARARRDELDEEAEQAAARAELADEAVHREGARLAWVDAWQAQLRELTILAVDDQ 514 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhccchhhhhcch
Q ss_pred ---------------------------------------HHHHHhhhHhhhHHHHHHHHHHHhHh---------------
Q 047747 278 ---------------------------------------AELKQKLSIAGELEAELNHRLEDISR--------------- 303 (748)
Q Consensus 278 ---------------------------------------~~Lk~~~~~~gr~t~~~~l~L~~i~~--------------- 303 (748)
..++.....+.....++--.++.+.+
T Consensus 515 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~e~~~el~~e~~~~e~~~~~~P~~~~~R~a~ 594 (1353)
T TIGR02680 515 PGALADLDSWDALLQGEAPVRVAVYSAVQPLADELTRERAALRLAEEVLEEERDALRTERERLEQGTDRDPPPPHTRAAL 594 (1353)
T ss_pred hhhhhhhcchhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchHHHHHH
Q ss_pred -------------------------------------------------------------------hhhhhhHHHHH--
Q 047747 304 -------------------------------------------------------------------DKDNLIMEKET-- 314 (748)
Q Consensus 304 -------------------------------------------------------------------l~~~lv~el~~-- 314 (748)
+.+.|+...+.
T Consensus 595 r~~~~pgaP~~~l~df~e~v~~~~ra~IEaAL~~~GLLDA~v~p~~~~~~~~~d~~l~~~~~~~~~~l~~~L~~~~~~~~ 674 (1353)
T TIGR02680 595 RRAGRAGAPLWQLVDFADDVPADVRAGLEAALEAAGLLDAWVTADGTLQDPDGAVLLHPATVAPGETLADVLRPWLDPPV 674 (1353)
T ss_pred HHcCCCCCcchhheecCCCCCHHHHHHHHHHHHHCCCcceeeCCCcccccCCCceeecCCCcccCCCHHhhccCccCCCc
Q ss_pred -----------HHHHhHhhHHHHHHHHhhH----HhHHHHHHH--hh------------------------HHHHHHHHH
Q 047747 315 -----------VLRRVEEGEKIAEDLRNSA----DQLNEEKLV--LG------------------------KELETLRGK 353 (748)
Q Consensus 315 -----------a~~~~~~~~~~Vt~L~~l~----g~l~~~~g~--~~------------------------~ei~~l~~~ 353 (748)
.+..+-.+..+.+ -+ +..+.+.|. .| ..|..|...
T Consensus 675 ~~~~~~~~~~~~v~~~L~~i~~~~----~~~~~~~~~v~~dG~~r~G~l~G~~~k~~a~~IG~~aR~~~R~~ri~el~~~ 750 (1353)
T TIGR02680 675 SAERQPEVDPAAVTRVLEGIACGT----ADAGAAHTWIDVDGRFRLGVLRGAWAKPAAEYIGAAARERARLRRIAELDAR 750 (1353)
T ss_pred chhccccCcHHHHHHHHhhccccC----CCCCCCCeeECCCCceeeeeeecccCCcchhHhhHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 354 ISNMEQQLESSKQEVSDLSQNLTATEEENKSL---------TLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREV 424 (748)
Q Consensus 354 l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l---------~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~ 424 (748)
|..+..++..+...+..+...+..+..+...+ ...+......+......+......+.............+
T Consensus 751 IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l 830 (1353)
T TIGR02680 751 LAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARREL 830 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHhhhhhhccchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047747 425 SSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHNRDMVVQIDS---KAAAAKQLEEENLQLQARISDLEMLTKER 501 (748)
Q Consensus 425 ~~l~~~~~~~~~~~~~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~---~~~~~~~l~~~~~~l~~~l~~l~~~l~~~ 501 (748)
......+ .+......+......+..+...+..+......+..-... ....+..+...+......+..+..++...
T Consensus 831 ~~aaa~l--~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a 908 (1353)
T TIGR02680 831 ERDAADL--DLPTDPDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEA 908 (1353)
T ss_pred HHHHhcC--CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhhhhhHHHHHhhhHHHHHHHHHHHHHHHh
Q 047747 502 GDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRG 581 (748)
Q Consensus 502 ~~el~~l~~~l~~~~~~~~~~i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~l~~l~~~~~~l~~ 581 (748)
..++..+...+......+..++..+...+..+..++..+......+...+....... .............+.-......
T Consensus 909 ~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~-~~a~~~~~~~~~~~~~~~~~~~ 987 (1353)
T TIGR02680 909 SLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR-AEADATLDERAEARDHAIGQLR 987 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHH
Q 047747 582 QKA 584 (748)
Q Consensus 582 ~~~ 584 (748)
.+.
T Consensus 988 e~~ 990 (1353)
T TIGR02680 988 EFA 990 (1353)
T ss_pred HHh
No 188
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.94 E-value=26 Score=26.56 Aligned_cols=18 Identities=28% Similarity=0.191 Sum_probs=6.6
Q ss_pred HHHHHhhhhHHHHHHhhh
Q 047747 654 RLKIEEGFHLTEEKLGLL 671 (748)
Q Consensus 654 ~~le~e~~~l~~~~~~l~ 671 (748)
..++.+...+..+....+
T Consensus 49 eaL~~eneqlk~e~~~WQ 66 (79)
T COG3074 49 EALERENEQLKEEQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 189
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.90 E-value=41 Score=37.43 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q 047747 523 IENLTAQINDLLADLDSLHNEKSKLEEHM 551 (748)
Q Consensus 523 i~~l~~~i~~l~~el~~l~~~~~~l~~~l 551 (748)
+......|..|..+|..-...+..|+.++
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555544444444444444433
No 190
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=78.77 E-value=28 Score=26.93 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=13.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 047747 351 RGKISNMEQQLESSKQEVSDLSQNLTATEEEN 382 (748)
Q Consensus 351 ~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l 382 (748)
...+..|...++.+...+......+..+..+.
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ER 35 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRER 35 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333333333
No 191
>PF08055 Trp_leader1: Tryptophan leader peptide; InterPro: IPR012638 This family consists of the tryptophan (trp) leader peptides. Tryptophan accumulation is the principal event resulting in down regulation of transcription of the structural genes of the trp operon. The leader peptide of the trp operon forms mutually exclusive secondary structures that would either result in the termination of transcription of the trp operon when tryptophan is in plentiful supply or vice versa [].
Probab=78.58 E-value=0.72 Score=24.01 Aligned_cols=9 Identities=0% Similarity=-0.072 Sum_probs=7.0
Q ss_pred ccccccccC
Q 047747 10 IKSFFGSYI 18 (748)
Q Consensus 10 ~~~~~~~~~ 18 (748)
.-|||..|-
T Consensus 7 ~nwwwtahp 15 (18)
T PF08055_consen 7 QNWWWTAHP 15 (18)
T ss_pred cceeeeccc
Confidence 369999884
No 192
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=78.18 E-value=1.1e+02 Score=33.58 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=10.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 047747 351 RGKISNMEQQLESSKQEVSDLSQ 373 (748)
Q Consensus 351 ~~~l~~le~~l~~~~~~l~~l~~ 373 (748)
..++..++.++..++..+..++.
T Consensus 177 ~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 177 VQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555554444444443
No 193
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=78.14 E-value=97 Score=32.77 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 047747 131 DGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAA 210 (748)
Q Consensus 131 ~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~ 210 (748)
....+.+..++.++....++...+..++..+...+......+...+.+|..|+.+...+..+.-........+...+..+
T Consensus 9 s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~ 88 (459)
T KOG0288|consen 9 SENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIA 88 (459)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777777777777777777777777777777776666555444444444444444444
Q ss_pred hHHHHHHHHHHHHHHH
Q 047747 211 GKIEAELNREVSDMKR 226 (748)
Q Consensus 211 ~~~~~~l~~~l~~l~~ 226 (748)
.........++..+..
T Consensus 89 en~~~r~~~eir~~~~ 104 (459)
T KOG0288|consen 89 ENLRIRSLNEIRELRE 104 (459)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4443333333333333
No 194
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=77.64 E-value=1.2e+02 Score=33.75 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 385 LTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKERE 423 (748)
Q Consensus 385 l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e 423 (748)
.+.++..+...-..+.-++.-|..+++...++|..++-=
T Consensus 109 yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~c 147 (861)
T KOG1899|consen 109 YQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETC 147 (861)
T ss_pred HHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHH
Confidence 344455555555555556666666666666666555433
No 195
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=77.63 E-value=74 Score=31.16 Aligned_cols=13 Identities=8% Similarity=-0.192 Sum_probs=7.6
Q ss_pred chHhhhccCCCCc
Q 047747 715 LPQISRNGAGAGS 727 (748)
Q Consensus 715 ~Lk~~l~~lG~~~ 727 (748)
.+..++..+|.+.
T Consensus 193 ~~e~~l~~~~~~~ 205 (221)
T PF04012_consen 193 DLEAELEELERDS 205 (221)
T ss_pred cHHHHHHHhcCCC
Confidence 4666666665544
No 196
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=76.85 E-value=60 Score=29.64 Aligned_cols=8 Identities=25% Similarity=0.468 Sum_probs=2.9
Q ss_pred HHHhHHHH
Q 047747 685 GSELSSLQ 692 (748)
Q Consensus 685 ~~~l~~l~ 692 (748)
..+++.+.
T Consensus 139 e~E~~kLk 146 (151)
T PF11559_consen 139 EREIEKLK 146 (151)
T ss_pred HHHHHHHH
Confidence 33333333
No 197
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.85 E-value=32 Score=26.06 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 179 IRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEA 237 (748)
Q Consensus 179 i~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~ 237 (748)
+..+-.-+.-+..++.++......+......+......+..+-..++.+...-+..++.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444334444444444444444444444433433333
No 198
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=75.66 E-value=39 Score=26.95 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHH
Q 047747 632 IKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLT 682 (748)
Q Consensus 632 ~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~ 682 (748)
++.+..+++.+..+....+..-..++..+..-..++..+...+.+|+....
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~ 56 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHR 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444455555444433
No 199
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=75.38 E-value=1.4e+02 Score=33.31 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=8.1
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 047747 346 ELETLRGKISNMEQQLES 363 (748)
Q Consensus 346 ei~~l~~~l~~le~~l~~ 363 (748)
++..+++.+..|+...+.
T Consensus 105 ~~~~yQerLaRLe~dkes 122 (861)
T KOG1899|consen 105 EYPEYQERLARLEMDKES 122 (861)
T ss_pred cchHHHHHHHHHhcchhh
Confidence 344444444444444444
No 200
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.19 E-value=64 Score=36.00 Aligned_cols=6 Identities=0% Similarity=-0.097 Sum_probs=2.9
Q ss_pred hHHhHH
Q 047747 332 SADQLN 337 (748)
Q Consensus 332 l~g~l~ 337 (748)
++|.++
T Consensus 262 ldGevl 267 (652)
T COG2433 262 LDGEVL 267 (652)
T ss_pred cCCcEE
Confidence 555544
No 201
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=73.73 E-value=1e+02 Score=30.75 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 396 FQQAQNLIQDLMAESSQLKEKMVEKER 422 (748)
Q Consensus 396 i~~l~~~i~~l~~~~~~l~~~l~~le~ 422 (748)
+.........+...+......+..+..
T Consensus 108 l~~~~~~p~~aq~~l~~~~~~l~ei~~ 134 (240)
T PF12795_consen 108 LIEIQTRPERAQQQLSEARQRLQEIRN 134 (240)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 202
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=72.47 E-value=1.1e+02 Score=30.65 Aligned_cols=54 Identities=24% Similarity=0.363 Sum_probs=24.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047747 560 TQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVN 613 (748)
Q Consensus 560 ~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~ 613 (748)
.++..+-.++..+...+..++.........+......+.+.-.+++.+++++..
T Consensus 273 nqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 273 NQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444455555554443
No 203
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=72.24 E-value=1.2e+02 Score=31.05 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=5.8
Q ss_pred HHHHHhhHHHHHHHH
Q 047747 576 LESLRGQKAVLEVQL 590 (748)
Q Consensus 576 ~~~l~~~~~~l~~~l 590 (748)
+..++..+..+..++
T Consensus 231 I~~Lr~EV~RLR~qL 245 (310)
T PF09755_consen 231 IRSLRQEVSRLRQQL 245 (310)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 204
>PRK10869 recombination and repair protein; Provisional
Probab=72.04 E-value=1.8e+02 Score=33.05 Aligned_cols=7 Identities=29% Similarity=0.620 Sum_probs=3.2
Q ss_pred hhccccc
Q 047747 738 IILMDEK 744 (748)
Q Consensus 738 ~~~~~~~ 744 (748)
++++||.
T Consensus 455 ~li~DEp 461 (553)
T PRK10869 455 ALIFDEV 461 (553)
T ss_pred EEEEECC
Confidence 4444543
No 205
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=71.51 E-value=94 Score=30.07 Aligned_cols=15 Identities=40% Similarity=0.381 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 047747 178 LIRNLKLEAESLNTE 192 (748)
Q Consensus 178 ei~~l~~~~~~l~~~ 192 (748)
+.....++...++.+
T Consensus 152 ~~~~~~~~~~kL~~e 166 (216)
T KOG1962|consen 152 ENDKLKADLEKLETE 166 (216)
T ss_pred hHHHHHhhHHHHHHH
Confidence 333333333333333
No 206
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=70.68 E-value=68 Score=27.48 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=6.4
Q ss_pred HHHHHHHhhHHHHHHHH
Q 047747 574 QELESLRGQKAVLEVQL 590 (748)
Q Consensus 574 ~~~~~l~~~~~~l~~~l 590 (748)
..+..++.++..+..++
T Consensus 10 ~~~q~~q~~~~~l~~q~ 26 (110)
T TIGR02338 10 AQLQQLQQQLQAVATQK 26 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 207
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=69.26 E-value=71 Score=29.80 Aligned_cols=7 Identities=14% Similarity=0.169 Sum_probs=4.0
Q ss_pred HHHHHhh
Q 047747 278 AELKQKL 284 (748)
Q Consensus 278 ~~Lk~~~ 284 (748)
.||+..+
T Consensus 8 ~y~~~qN 14 (169)
T PF07106_consen 8 EYMKEQN 14 (169)
T ss_pred HHHHHcC
Confidence 5666655
No 208
>PF14992 TMCO5: TMCO5 family
Probab=68.96 E-value=1.4e+02 Score=30.27 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHhhh
Q 047747 523 IENLTAQINDLLADLDSLHNEKSKLEEHMVF 553 (748)
Q Consensus 523 i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~ 553 (748)
+.+++.....++...+.+...+.++..++..
T Consensus 65 l~~le~e~~~LE~~ne~l~~~~~elq~k~~e 95 (280)
T PF14992_consen 65 LQELELETAKLEKENEHLSKSVQELQRKQDE 95 (280)
T ss_pred HHHHHhhhHHHhhhhHhhhhhhhhhhhhhcc
Confidence 3444444455555555554555555555443
No 209
>PRK10869 recombination and repair protein; Provisional
Probab=68.68 E-value=2.2e+02 Score=32.50 Aligned_cols=18 Identities=11% Similarity=-0.021 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 047747 626 ESLTARIKSLELEVASLG 643 (748)
Q Consensus 626 ~~l~~~~~~l~~~l~~l~ 643 (748)
..+..++..+..-....+
T Consensus 299 ~~ie~Rl~~l~~L~rKyg 316 (553)
T PRK10869 299 AELEQRLSKQISLARKHH 316 (553)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 333333333333333333
No 210
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=68.48 E-value=2.2e+02 Score=32.56 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHH
Q 047747 628 LTARIKSLELEVASLGNQKSDLEE 651 (748)
Q Consensus 628 l~~~~~~l~~~l~~l~~e~~~l~~ 651 (748)
+...+..+....+.++..+..|..
T Consensus 228 ~kk~l~~~~~~k~rl~~d~E~Lr~ 251 (916)
T KOG0249|consen 228 VKKQLEEMRHDKDKLRTDIEDLRG 251 (916)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Confidence 333333333333333333333333
No 211
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=67.90 E-value=1.3e+02 Score=29.58 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047747 401 NLIQDLMAESSQLKEKMV 418 (748)
Q Consensus 401 ~~i~~l~~~~~~l~~~l~ 418 (748)
..|..|+..-..++.++.
T Consensus 108 d~i~nLk~se~~lkqQ~~ 125 (330)
T KOG2991|consen 108 DDITNLKESEEKLKQQQQ 125 (330)
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 344444444444444443
No 212
>PF13166 AAA_13: AAA domain
Probab=67.71 E-value=2.6e+02 Score=33.04 Aligned_cols=7 Identities=29% Similarity=0.781 Sum_probs=2.6
Q ss_pred eeeeccC
Q 047747 728 CLVLHSP 734 (748)
Q Consensus 728 ~~~~~~~ 734 (748)
..|+--|
T Consensus 530 iiViDDP 536 (712)
T PF13166_consen 530 IIVIDDP 536 (712)
T ss_pred eEEECCC
Confidence 3333333
No 213
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=66.87 E-value=2.1e+02 Score=31.61 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=22.0
Q ss_pred hHhhHHHHHHHHHHHhhhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHH
Q 047747 536 DLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEV 588 (748)
Q Consensus 536 el~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~ 588 (748)
-+.=+...+..++.++......-......+..++..+...-..+..+-.++..
T Consensus 141 ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ 193 (475)
T PRK10361 141 LLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTR 193 (475)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445544444443222223344444444444433344443333333
No 214
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=66.70 E-value=75 Score=26.47 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 132 GMKQELDAATLEVSELKRRMTATSEE 157 (748)
Q Consensus 132 ~lk~~l~~~~~ei~~l~~~l~~l~~e 157 (748)
.+...+.....++..+..++..+..+
T Consensus 14 ~~~~~~~~k~~~~~~lE~k~~rl~~E 39 (96)
T PF08647_consen 14 ELSEQADKKVKELTILEQKKLRLEAE 39 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 215
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=66.12 E-value=1.9e+02 Score=31.01 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHHHhhHH
Q 047747 564 GLMNQVDTLQQELESLRGQKA 584 (748)
Q Consensus 564 ~l~~~l~~l~~~~~~l~~~~~ 584 (748)
-+...+.+-+-....+.++++
T Consensus 248 ~~~~~LqEEr~R~erLEeqlN 268 (395)
T PF10267_consen 248 FILEALQEERYRYERLEEQLN 268 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 333333333333333443333
No 216
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=64.48 E-value=83 Score=26.20 Aligned_cols=11 Identities=0% Similarity=-0.384 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 047747 646 KSDLEEQMRLK 656 (748)
Q Consensus 646 ~~~l~~~~~~l 656 (748)
|..+....+.+
T Consensus 47 yfa~mr~~d~l 57 (96)
T PF08647_consen 47 YFAAMRSKDAL 57 (96)
T ss_pred HHHHHHhHHHH
Confidence 33333333333
No 217
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=63.67 E-value=2.2e+02 Score=30.76 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=27.0
Q ss_pred hhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHHhhcch
Q 047747 659 EGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMAAQASLP 716 (748)
Q Consensus 659 e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~~~~~a~~~~~~l~~~i~~L 716 (748)
+.......+..+......+...+..+..-+..+...|........+.+..|..+|..|
T Consensus 330 ~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 330 EAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334444444444555555555555555555555555432222233444444444443
No 218
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=63.54 E-value=1.7e+02 Score=29.37 Aligned_cols=18 Identities=6% Similarity=-0.053 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 047747 568 QVDTLQQELESLRGQKAV 585 (748)
Q Consensus 568 ~l~~l~~~~~~l~~~~~~ 585 (748)
.+.+++.+..++..-+..
T Consensus 150 YFvDINiQN~KLEsLLqs 167 (305)
T PF15290_consen 150 YFVDINIQNKKLESLLQS 167 (305)
T ss_pred HHhhhhhhHhHHHHHHHH
Confidence 333333333333333333
No 219
>PRK04406 hypothetical protein; Provisional
Probab=63.06 E-value=54 Score=25.88 Aligned_cols=12 Identities=17% Similarity=-0.103 Sum_probs=4.4
Q ss_pred HHHhhcchHhhh
Q 047747 709 MAAQASLPQISR 720 (748)
Q Consensus 709 l~~~i~~Lk~~l 720 (748)
++.++..|..++
T Consensus 44 L~~ql~~L~~rl 55 (75)
T PRK04406 44 MQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 220
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=62.59 E-value=1e+02 Score=26.68 Aligned_cols=37 Identities=30% Similarity=0.106 Sum_probs=17.6
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHh
Q 047747 660 GFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHI 696 (748)
Q Consensus 660 ~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~ 696 (748)
..+|....+.++.++..|+.+...+..+|+.++..+.
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555555555554444443
No 221
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=61.34 E-value=1.8e+02 Score=29.10 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 147 LKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNL 182 (748)
Q Consensus 147 l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l 182 (748)
.+.++..+..++..+..+|..+...+..++.....+
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l 75 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQL 75 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333333333
No 222
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.15 E-value=52 Score=30.70 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhhh
Q 047747 521 SRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKD 555 (748)
Q Consensus 521 ~~i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l~ 555 (748)
.++..+..++..+..++..+...+..+..++..+.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555666666555555555555554
No 223
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.70 E-value=2.7e+02 Score=30.80 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHhhh
Q 047747 56 KEPLVELIEGFHSQYQSLYAQYDNLRGELKK 86 (748)
Q Consensus 56 ~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~ 86 (748)
+..|-...+++.-.|+....-.|.....+.+
T Consensus 45 K~~Lkqq~eEleaeyd~~R~Eldqtkeal~q 75 (772)
T KOG0999|consen 45 KEDLKQQLEELEAEYDLARTELDQTKEALGQ 75 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544443
No 224
>PRK02119 hypothetical protein; Provisional
Probab=58.00 E-value=59 Score=25.51 Aligned_cols=16 Identities=13% Similarity=-0.029 Sum_probs=6.3
Q ss_pred HHHHHhhcchHhhhcc
Q 047747 707 TAMAAQASLPQISRNG 722 (748)
Q Consensus 707 ~~l~~~i~~Lk~~l~~ 722 (748)
..++.++..|..++.+
T Consensus 40 d~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 40 DKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444444444433
No 225
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=56.92 E-value=1.7e+02 Score=27.37 Aligned_cols=9 Identities=22% Similarity=0.372 Sum_probs=4.1
Q ss_pred HHHHHhhHH
Q 047747 326 AEDLRNSAD 334 (748)
Q Consensus 326 Vt~L~~l~g 334 (748)
|.+|++|.+
T Consensus 3 isALK~LQe 11 (178)
T PF14073_consen 3 ISALKNLQE 11 (178)
T ss_pred HHHHHHHHH
Confidence 444444444
No 226
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=56.43 E-value=2e+02 Score=27.94 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 047747 222 SDMKRQLTARSEEK 235 (748)
Q Consensus 222 ~~l~~~l~~l~~e~ 235 (748)
..++.+.+.+..+.
T Consensus 182 ~al~Kq~e~~~~Ey 195 (216)
T KOG1962|consen 182 DALKKQSEGLQDEY 195 (216)
T ss_pred HHHHHHHHHcccHH
Confidence 33333333333333
No 227
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=56.13 E-value=99 Score=34.01 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 047747 200 NAELNQKLDAAGKIEAELNREVSDMKRQLTA 230 (748)
Q Consensus 200 l~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~ 230 (748)
+.++..+++.+++.+...+.++..++..+.+
T Consensus 109 I~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 109 IEEINTKIEELKRLIPQKQLELSALKGEIEQ 139 (907)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 3333333333333333333333344333333
No 228
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=55.83 E-value=3e+02 Score=29.92 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHhhhhHhHHHHHHHHHHHH
Q 047747 497 LTKERGDELTTTIMKLEANESESLSRIENLTAQI 530 (748)
Q Consensus 497 ~l~~~~~el~~l~~~l~~~~~~~~~~i~~l~~~i 530 (748)
++..+..++..+.+-...........+..+...+
T Consensus 152 Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki 185 (424)
T PF03915_consen 152 EVQSLRRELAVLRQLYSEFQSEVKESISSIREKI 185 (424)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333333344444444333
No 229
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=55.20 E-value=1.6e+02 Score=26.61 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHH
Q 047747 649 LEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSE 687 (748)
Q Consensus 649 l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~ 687 (748)
..+.+.++...+..+...+..++..+..+...+..+...
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~ 130 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQE 130 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444333
No 230
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=55.01 E-value=72 Score=33.17 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=16.7
Q ss_pred HHHHHHHhhcchHhhhccCCCCceeeeccCcchhhc
Q 047747 705 QITAMAAQASLPQISRNGAGAGSCLVLHSPYSKIIL 740 (748)
Q Consensus 705 ~~~~l~~~i~~Lk~~l~~lG~~~~~~~~~~~~~~~~ 740 (748)
.++.++..+...+..+.... ..+|+-+.-|+.+||
T Consensus 69 ~i~~L~~~Ik~r~~~l~DmE-a~LPkkNGlyL~liL 103 (330)
T PF07851_consen 69 LIEKLEEDIKERRCQLFDME-AFLPKKNGLYLRLIL 103 (330)
T ss_pred HHHHHHHHHHHHHhhHHHHH-hhCCCCCCcccceec
Confidence 44455555555554444433 344444444555444
No 231
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=54.77 E-value=2.4e+02 Score=28.45 Aligned_cols=40 Identities=10% Similarity=-0.003 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHH
Q 047747 626 ESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTE 665 (748)
Q Consensus 626 ~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~ 665 (748)
-....+...++.++..+-..|-..-..+..++.++.....
T Consensus 221 PAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~ 260 (267)
T PF10234_consen 221 PAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNR 260 (267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344445555555556666565555566666666655544
No 232
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=54.26 E-value=3.1e+02 Score=29.49 Aligned_cols=65 Identities=25% Similarity=0.292 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 178 LIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEY 242 (748)
Q Consensus 178 ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l 242 (748)
+-..+-..++.+..+-..+...+.+.+.+-..+.......++........+-..+.++..+..++
T Consensus 191 eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~ 255 (447)
T KOG2751|consen 191 EEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQI 255 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Confidence 33333334444444444444444444444444444444444444444444444444444444443
No 233
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=53.98 E-value=1.7e+02 Score=26.31 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 047747 626 ESLTARIKSLELEVASLGN 644 (748)
Q Consensus 626 ~~l~~~~~~l~~~l~~l~~ 644 (748)
..+...|+....++..++.
T Consensus 87 ~~vRkkID~vNreLkpl~~ 105 (159)
T PF04949_consen 87 EMVRKKIDSVNRELKPLGQ 105 (159)
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 3333334444444444433
No 234
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=53.83 E-value=2.3e+02 Score=27.91 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=11.2
Q ss_pred HHHHhHhhHHHHHHHHHHHhhhhh
Q 047747 532 DLLADLDSLHNEKSKLEEHMVFKD 555 (748)
Q Consensus 532 ~l~~el~~l~~~~~~l~~~l~~l~ 555 (748)
.++.+++.-...+.++...+..+.
T Consensus 181 rlK~ele~tk~Klee~QnelsAwk 204 (330)
T KOG2991|consen 181 RLKGELEQTKDKLEEAQNELSAWK 204 (330)
T ss_pred HHHHHHHHHHHHHHHHHhhhheee
Confidence 334444444444555555554444
No 235
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=53.54 E-value=3.2e+02 Score=29.48 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=4.9
Q ss_pred HhHHHHHHHHHH
Q 047747 354 ISNMEQQLESSK 365 (748)
Q Consensus 354 l~~le~~l~~~~ 365 (748)
+..|+..|..++
T Consensus 211 ~a~LE~RL~~LE 222 (388)
T PF04912_consen 211 AADLEKRLARLE 222 (388)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 236
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=52.82 E-value=2.1e+02 Score=27.25 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 047747 221 VSDMKRQLTARSEEKE 236 (748)
Q Consensus 221 l~~l~~~l~~l~~e~~ 236 (748)
+..++.....+..++.
T Consensus 161 i~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 161 ISRLKSEAEALKEEIE 176 (190)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 237
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=52.51 E-value=1.8e+02 Score=27.73 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=18.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 047747 346 ELETLRGKISNMEQQLESSKQEVSD 370 (748)
Q Consensus 346 ei~~l~~~l~~le~~l~~~~~~l~~ 370 (748)
+...|+.+++.|+..+..++.....
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667888888888888877666655
No 238
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=52.50 E-value=2.1e+02 Score=27.17 Aligned_cols=67 Identities=9% Similarity=0.145 Sum_probs=31.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047747 202 ELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQTALSKIQEAEEIIRNLKLEAESLNN 268 (748)
Q Consensus 202 ~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~e~~~~~~~~~~~l~~~~~el~~~~~ 268 (748)
.....+..+...+......+.....-......++.....-+...+.++..+.+.+.....|+...+.
T Consensus 106 ~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 106 QAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444445555555555555554455555543
No 239
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=52.41 E-value=5.1e+02 Score=31.51 Aligned_cols=11 Identities=18% Similarity=0.054 Sum_probs=5.2
Q ss_pred hhhhhhHHHHHH
Q 047747 304 DKDNLIMEKETV 315 (748)
Q Consensus 304 l~~~lv~el~~a 315 (748)
+..||.+ |+.|
T Consensus 374 lEETlST-LEYA 384 (1041)
T KOG0243|consen 374 LEETLST-LEYA 384 (1041)
T ss_pred HHHHHHH-HHHH
Confidence 4454433 5555
No 240
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=52.34 E-value=5.6e+02 Score=31.93 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=16.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 125 EYQKTTDGMKQELDAATLEVSELKRRMT 152 (748)
Q Consensus 125 ~~~~~~~~lk~~l~~~~~ei~~l~~~l~ 152 (748)
.|......++.........+..+...+.
T Consensus 181 ~y~~~~~~l~er~k~~~~~l~~l~~~l~ 208 (1047)
T PRK10246 181 IYGQISAMVFEQHKSARTELEKLQAQAS 208 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444455556566666666666666654
No 241
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=52.01 E-value=2.2e+02 Score=27.17 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 047747 674 IFELEKTLTERGSELSSL 691 (748)
Q Consensus 674 i~~le~~~~~~~~~l~~l 691 (748)
|..+......+...+...
T Consensus 161 i~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 161 ISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 242
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=50.88 E-value=2e+02 Score=26.39 Aligned_cols=9 Identities=0% Similarity=-0.389 Sum_probs=3.5
Q ss_pred chHhhhccC
Q 047747 715 LPQISRNGA 723 (748)
Q Consensus 715 ~Lk~~l~~l 723 (748)
.|...|..+
T Consensus 120 Gldeqi~~l 128 (155)
T PF06810_consen 120 GLDEQIKAL 128 (155)
T ss_pred cHHHHHHHH
Confidence 334444333
No 243
>PRK02793 phi X174 lysis protein; Provisional
Probab=50.62 E-value=98 Score=24.20 Aligned_cols=15 Identities=7% Similarity=-0.009 Sum_probs=5.7
Q ss_pred HHHHhhcchHhhhcc
Q 047747 708 AMAAQASLPQISRNG 722 (748)
Q Consensus 708 ~l~~~i~~Lk~~l~~ 722 (748)
.++.++..|..++.+
T Consensus 40 ~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 40 KLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333333333333
No 244
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=50.20 E-value=4.7e+02 Score=30.46 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHH
Q 047747 623 EEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEK 667 (748)
Q Consensus 623 ~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~ 667 (748)
-++...-..++.++-.++....+..-|.-.++.-+.++..|+.--
T Consensus 501 ~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLt 545 (861)
T PF15254_consen 501 IEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELT 545 (861)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444433
No 245
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=50.14 E-value=2.6e+02 Score=27.46 Aligned_cols=17 Identities=0% Similarity=-0.038 Sum_probs=7.9
Q ss_pred HHHhhcchHhhhccCCC
Q 047747 709 MAAQASLPQISRNGAGA 725 (748)
Q Consensus 709 l~~~i~~Lk~~l~~lG~ 725 (748)
+......+...++.++.
T Consensus 231 l~d~st~~e~k~d~i~K 247 (254)
T KOG2196|consen 231 LDDNSTQLEKKLDKIKK 247 (254)
T ss_pred HHhhhHHHHHHHHHHHh
Confidence 33444445555554443
No 246
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.94 E-value=5.1e+02 Score=30.74 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=13.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 047747 347 LETLRGKISNMEQQLESSKQEVSDLSQ 373 (748)
Q Consensus 347 i~~l~~~l~~le~~l~~~~~~l~~l~~ 373 (748)
+.-+..++..++.++..++..+..++.
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555444
No 247
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=49.86 E-value=2.2e+02 Score=26.62 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=5.5
Q ss_pred HHHhhHHHHHHHHHH
Q 047747 578 SLRGQKAVLEVQLEE 592 (748)
Q Consensus 578 ~l~~~~~~l~~~l~~ 592 (748)
....+..-++.++..
T Consensus 68 aAEtRCslLEKQLey 82 (178)
T PF14073_consen 68 AAETRCSLLEKQLEY 82 (178)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 248
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=49.67 E-value=5.6e+02 Score=31.18 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=3.5
Q ss_pred HHHhhhHHH
Q 047747 75 AQYDNLRGE 83 (748)
Q Consensus 75 ~~~~~~~~~ 83 (748)
+.|+.+.+.
T Consensus 111 d~Y~~~v~p 119 (1041)
T KOG0243|consen 111 DLYDQAVSP 119 (1041)
T ss_pred HHHHHHHHH
Confidence 334444333
No 249
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=49.60 E-value=2.1e+02 Score=32.35 Aligned_cols=38 Identities=26% Similarity=0.141 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHH
Q 047747 647 SDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTER 684 (748)
Q Consensus 647 ~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~ 684 (748)
..+.+-..++..++..+...+..+...+..++..+..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 164 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433333333
No 250
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=49.20 E-value=61 Score=34.66 Aligned_cols=40 Identities=15% Similarity=-0.002 Sum_probs=22.0
Q ss_pred hHHHHHHHHhhcchHhhhccCCCCceeeeccCcchhhccccc
Q 047747 703 SAQITAMAAQASLPQISRNGAGAGSCLVLHSPYSKIILMDEK 744 (748)
Q Consensus 703 ~~~~~~l~~~i~~Lk~~l~~lG~~~~~~~~~~~~~~~~~~~~ 744 (748)
+..+-.-+..-..+...+.+.| .-..+..|.-+.|.++.+
T Consensus 289 S~~~l~kRr~~~~i~~~Lr~~~--i~~~~~YPakL~i~~~G~ 328 (370)
T PF02994_consen 289 SPETLQKRRKFNPIKKKLREKG--IKYRLLYPAKLRITYNGK 328 (370)
T ss_dssp THHHHHHHHHHHHHHHHHHHTT--S--EEETTTEEEEESSSS
T ss_pred CHHHHHHHHHHHHHHHHHHHcC--CCccccCcchhcceeCCc
Confidence 3344444555556666666664 345666777776666654
No 251
>PF14992 TMCO5: TMCO5 family
Probab=49.03 E-value=3e+02 Score=27.88 Aligned_cols=33 Identities=6% Similarity=-0.034 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHH
Q 047747 440 AQIKELQAQVTGLELELESLQAHNRDMVVQIDS 472 (748)
Q Consensus 440 ~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~ 472 (748)
..+...+..++.+.........++..+..+...
T Consensus 109 ~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~ 141 (280)
T PF14992_consen 109 QSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQ 141 (280)
T ss_pred cccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555544443333
No 252
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=47.58 E-value=3.6e+02 Score=28.33 Aligned_cols=80 Identities=18% Similarity=0.124 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHHhhcchHhhhccCCCCc
Q 047747 648 DLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMAAQASLPQISRNGAGAGS 727 (748)
Q Consensus 648 ~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~~~~~a~~~~~~l~~~i~~Lk~~l~~lG~~~ 727 (748)
+++--++-.+.++.=|..++..+.+.+.-+-....-...+...+...+......+.-+|..|+.+++.....|.+-.|++
T Consensus 509 ELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKakadcdIsrLKEqLkaAteALgEKspds 588 (593)
T KOG4807|consen 509 ELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAKADCDISRLKEQLKAATEALGEKSPDS 588 (593)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHhcccCCcc
Confidence 44444455555555555555555544433332222223444455555554444455567777777666555554444443
No 253
>PRK00295 hypothetical protein; Provisional
Probab=46.48 E-value=1.4e+02 Score=23.12 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047747 399 AQNLIQDLMAESSQLKEKM 417 (748)
Q Consensus 399 l~~~i~~l~~~~~~l~~~l 417 (748)
....|..+..++..+..++
T Consensus 31 Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 31 QQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 254
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=46.30 E-value=2.7e+02 Score=30.48 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 047747 403 IQDLMAESSQLKEKM 417 (748)
Q Consensus 403 i~~l~~~~~~l~~~l 417 (748)
.+.++.++..+...+
T Consensus 118 ~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 118 IEQLKSERQQLQGLI 132 (472)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 255
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=45.95 E-value=69 Score=34.27 Aligned_cols=36 Identities=11% Similarity=0.264 Sum_probs=13.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 206 KLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLE 241 (748)
Q Consensus 206 ~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~ 241 (748)
.+..++..+..++..+..+...+..+...+..+...
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~k 180 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDK 180 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333333333444333433333333333333333333
No 256
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=45.84 E-value=3.3e+02 Score=27.42 Aligned_cols=24 Identities=8% Similarity=0.149 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh
Q 047747 56 KEPLVELIEGFHSQYQSLYAQYDN 79 (748)
Q Consensus 56 ~~~~~~~~~e~~~~~~~l~~~~~~ 79 (748)
||..+..+..+..-|..++..+.-
T Consensus 95 k~S~~silq~If~KHGDIAsNc~l 118 (269)
T PF05278_consen 95 KPSQVSILQKIFEKHGDIASNCKL 118 (269)
T ss_pred cHhHHHHHHHHHHhCccHhhcccc
Confidence 677777776666666655554443
No 257
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=45.62 E-value=1.9e+02 Score=24.51 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047747 399 AQNLIQDLMAESSQLKEKMVEKEREVSSLV 428 (748)
Q Consensus 399 l~~~i~~l~~~~~~l~~~l~~le~e~~~l~ 428 (748)
+..+...+..+++.+..+...+..++..+.
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~ 63 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 333444444444444444444444444443
No 258
>PRK00846 hypothetical protein; Provisional
Probab=45.41 E-value=1.5e+02 Score=23.48 Aligned_cols=24 Identities=13% Similarity=-0.060 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 395 EFQQAQNLIQDLMAESSQLKEKMV 418 (748)
Q Consensus 395 ~i~~l~~~i~~l~~~~~~l~~~l~ 418 (748)
.+......+..+..++..+..++.
T Consensus 35 ~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 35 ALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443
No 259
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=45.27 E-value=1.2e+02 Score=27.32 Aligned_cols=69 Identities=10% Similarity=0.026 Sum_probs=31.6
Q ss_pred HHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHHhhcchHhhhccCCCCc
Q 047747 656 KIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVENKASAQITAMAAQASLPQISRNGAGAGS 727 (748)
Q Consensus 656 le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~~~~~a~~~~~~l~~~i~~Lk~~l~~lG~~~ 727 (748)
....+......++.|...+..+..........|.-+.+..... ..+.+.++..+|..++.-+...+.+.
T Consensus 70 ~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qe---s~~~veel~eqV~el~~i~emv~~d~ 138 (157)
T COG3352 70 QKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQE---SRGIVEELEEQVNELKMIVEMVIKDL 138 (157)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333444444444444444444444444444444443333222 12245566666666666555444433
No 260
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.83 E-value=4.8e+02 Score=28.98 Aligned_cols=8 Identities=13% Similarity=0.326 Sum_probs=2.9
Q ss_pred HHHhHhhH
Q 047747 533 LLADLDSL 540 (748)
Q Consensus 533 l~~el~~l 540 (748)
+..-++.+
T Consensus 674 L~~~iET~ 681 (741)
T KOG4460|consen 674 LGNAIETV 681 (741)
T ss_pred HHHHHHHH
Confidence 33333333
No 261
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=43.71 E-value=2e+02 Score=24.39 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 389 ISEMSNEFQQAQNLIQDLMAESSQL 413 (748)
Q Consensus 389 l~~l~~~i~~l~~~i~~l~~~~~~l 413 (748)
+..+...+..+..++..+..++..+
T Consensus 67 v~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 67 VHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333333333444444333333333
No 262
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=43.50 E-value=3.9e+02 Score=27.57 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047747 398 QAQNLIQDLMAESSQLKEKM 417 (748)
Q Consensus 398 ~l~~~i~~l~~~~~~l~~~l 417 (748)
.....|..+..++..++..+
T Consensus 85 ~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 85 AQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 263
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=43.36 E-value=1.7e+02 Score=23.39 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=14.1
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 047747 445 LQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQL 480 (748)
Q Consensus 445 ~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l 480 (748)
++.+++.+..+.......-.+++..+...-.++..+
T Consensus 9 ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~i 44 (79)
T PF08581_consen 9 IRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQI 44 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333433333333333333
No 264
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=42.87 E-value=3.6e+02 Score=26.99 Aligned_cols=43 Identities=28% Similarity=0.319 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 047747 615 TEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKI 657 (748)
Q Consensus 615 ~~~~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le 657 (748)
.....+++.++......+..++.+++.++.+.-.|-++++++.
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444555555555555555555555555555555543
No 265
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=42.47 E-value=2e+02 Score=27.37 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=7.7
Q ss_pred HHHHHHHhhHHHHHHHHH
Q 047747 443 KELQAQVTGLELELESLQ 460 (748)
Q Consensus 443 ~~~e~el~~l~~~~~~l~ 460 (748)
..++.++..|+..+...+
T Consensus 99 vrLkrELa~Le~~l~~~~ 116 (195)
T PF12761_consen 99 VRLKRELAELEEKLSKVE 116 (195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 266
>PRK12704 phosphodiesterase; Provisional
Probab=42.19 E-value=5.5e+02 Score=28.95 Aligned_cols=9 Identities=11% Similarity=0.017 Sum_probs=3.8
Q ss_pred HhhhccCCC
Q 047747 717 QISRNGAGA 725 (748)
Q Consensus 717 k~~l~~lG~ 725 (748)
+.++.-+|.
T Consensus 496 e~~~~ypg~ 504 (520)
T PRK12704 496 EEELQYPGQ 504 (520)
T ss_pred HHhCcCCCc
Confidence 344444443
No 267
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=41.84 E-value=3.7e+02 Score=26.79 Aligned_cols=105 Identities=9% Similarity=-0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 047747 572 LQQELESLRGQKAVLEVQLEEKTREISEYIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEE 651 (748)
Q Consensus 572 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~ 651 (748)
++..+..+..+++.....+.........+...|+.-+.++......++.+..---....+....+.++..+-..|-.--.
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~ 189 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFH 189 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHhhhhHHHHHHhhhhhHHH
Q 047747 652 QMRLKIEEGFHLTEEKLGLLDGIFE 676 (748)
Q Consensus 652 ~~~~le~e~~~l~~~~~~l~~~i~~ 676 (748)
.+..++.++.+....-........+
T Consensus 190 nl~yL~~qldd~~rse~~rqeeaen 214 (338)
T KOG3647|consen 190 NLDYLKSQLDDRTRSEPIRQEEAEN 214 (338)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHh
No 268
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=41.38 E-value=1.6e+02 Score=22.47 Aligned_cols=26 Identities=31% Similarity=0.472 Sum_probs=12.9
Q ss_pred HHHHHHHHhHhhHHHHHHHHHHHhhh
Q 047747 528 AQINDLLADLDSLHNEKSKLEEHMVF 553 (748)
Q Consensus 528 ~~i~~l~~el~~l~~~~~~l~~~l~~ 553 (748)
.++..+..++..++..+..+...+..
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444445555555555555554443
No 269
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=41.12 E-value=6.5e+02 Score=29.43 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHH
Q 047747 441 QIKELQAQVTGLELELESLQAHNRDMVVQIDSKA 474 (748)
Q Consensus 441 ~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~ 474 (748)
++..++.---.|+.++.+....++.++..-..+.
T Consensus 428 El~sLqSlN~~Lq~ql~es~k~~e~lq~kneell 461 (861)
T PF15254_consen 428 ELFSLQSLNMSLQNQLQESLKSQELLQSKNEELL 461 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Confidence 3333333333334444333333333333333333
No 270
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=40.45 E-value=2.2e+02 Score=23.79 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHh
Q 047747 524 ENLTAQINDLLADLDSLHNEKSKLEEHM 551 (748)
Q Consensus 524 ~~l~~~i~~l~~el~~l~~~~~~l~~~l 551 (748)
..+...+..+..++..+...+..+...+
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l 92 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKL 92 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 271
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=40.28 E-value=5e+02 Score=27.94 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=8.3
Q ss_pred HHHHHHhHhhHHHHHHHHHHH
Q 047747 530 INDLLADLDSLHNEKSKLEEH 550 (748)
Q Consensus 530 i~~l~~el~~l~~~~~~l~~~ 550 (748)
+..+..-+..++..+..+..+
T Consensus 20 L~~ld~~i~~l~~~i~~ld~e 40 (383)
T PF04100_consen 20 LSNLDELIAKLRKEIRELDEE 40 (383)
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 272
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.83 E-value=5.1e+02 Score=27.86 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhH
Q 047747 440 AQIKELQAQVTGLELELESLQAHN 463 (748)
Q Consensus 440 ~~~~~~e~el~~l~~~~~~l~~~l 463 (748)
..+.+++..+..|...+-......
T Consensus 173 ee~kqlEe~ieeL~qsl~kd~~~~ 196 (446)
T KOG4438|consen 173 EEVKQLEENIEELNQSLLKDFNQQ 196 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333333
No 273
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=39.05 E-value=2.4e+02 Score=23.78 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 379 EEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVS 425 (748)
Q Consensus 379 ~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~ 425 (748)
+.....+...+......+..+..+++.+...-.+|..++..++.++.
T Consensus 25 Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 25 QAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444445555555555555555555555555555444
No 274
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=38.88 E-value=4.3e+02 Score=27.15 Aligned_cols=55 Identities=20% Similarity=0.281 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 047747 600 YIIEVQILKEEIVNKTEVQQKILEEIESLTARIKSLELEVASLGNQKSDLEEQMR 654 (748)
Q Consensus 600 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~ 654 (748)
+--++..|+..+......+..-..+...+..++......++.|.....++++.+.
T Consensus 145 l~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~ 199 (405)
T KOG2010|consen 145 LIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLR 199 (405)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344444444444444444444444444443
No 275
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=38.62 E-value=7.4e+02 Score=29.42 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 439 LAQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEML 497 (748)
Q Consensus 439 ~~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~ 497 (748)
...+...+.....|...+..+..+...+..........++.++.++..+..++..+...
T Consensus 458 ~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 458 EQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555544444455555555555554444444444444
No 276
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=37.80 E-value=1.9e+02 Score=22.45 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=18.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 047747 559 STQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREISEYI 601 (748)
Q Consensus 559 ~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~ 601 (748)
..+....+..+..++..+.....+...+..++..+...+..+.
T Consensus 20 ~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls 62 (70)
T PF04899_consen 20 EKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLS 62 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333333333
No 277
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.41 E-value=2e+02 Score=24.54 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=12.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHH
Q 047747 635 LELEVASLGNQKSDLEEQMRLKIEEGFHLTEEK 667 (748)
Q Consensus 635 l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~ 667 (748)
++..+..+..++..++..+..+-.+...|+-+.
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN 45 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIEN 45 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 278
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.06 E-value=2e+02 Score=22.37 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhhhhHHHH
Q 047747 647 SDLEEQMRLKIEEGFHLTEE 666 (748)
Q Consensus 647 ~~l~~~~~~le~e~~~l~~~ 666 (748)
.+|+.++.+.+.-+..|+..
T Consensus 11 ~eLE~r~AfQE~tieeLn~~ 30 (72)
T COG2900 11 IELEIRLAFQEQTIEELNDA 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444443333333333
No 279
>PF14282 FlxA: FlxA-like protein
Probab=36.37 E-value=2.3e+02 Score=24.02 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=6.0
Q ss_pred HHHHHHHHhhHHHHHH
Q 047747 442 IKELQAQVTGLELELE 457 (748)
Q Consensus 442 ~~~~e~el~~l~~~~~ 457 (748)
+..+...+..|..++.
T Consensus 21 I~~L~~Qi~~Lq~ql~ 36 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQ 36 (106)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 280
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.33 E-value=2.1e+02 Score=22.30 Aligned_cols=48 Identities=19% Similarity=0.052 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHh
Q 047747 649 LEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHI 696 (748)
Q Consensus 649 l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~ 696 (748)
++.++..++..+.--...++.|...+.+-...+.+....+..+.++|.
T Consensus 6 lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~ 53 (72)
T COG2900 6 LEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444433
No 281
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.31 E-value=3.8e+02 Score=25.38 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 464 RDMVVQIDSKAAAAKQLEEENLQLQARISDLEML 497 (748)
Q Consensus 464 ~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~ 497 (748)
.-|...++........|...+..+...+..+..+
T Consensus 84 ~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~e 117 (182)
T PF15035_consen 84 ALLREQLEQARKANEALQEDLQKLTQDWERLRDE 117 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333333333
No 282
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=36.03 E-value=3.5e+02 Score=24.92 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047747 150 RMTATSEEKEALNLEYQ 166 (748)
Q Consensus 150 ~l~~l~~eke~l~~~~~ 166 (748)
.+..+..+.+.+..++.
T Consensus 51 e~~~L~~d~e~L~~q~~ 67 (158)
T PF09744_consen 51 ELELLREDNEQLETQYE 67 (158)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 283
>PRK11519 tyrosine kinase; Provisional
Probab=35.79 E-value=8.1e+02 Score=29.01 Aligned_cols=26 Identities=12% Similarity=0.339 Sum_probs=13.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 047747 348 ETLRGKISNMEQQLESSKQEVSDLSQ 373 (748)
Q Consensus 348 ~~l~~~l~~le~~l~~~~~~l~~l~~ 373 (748)
.-+..++..++.++..++..+..++.
T Consensus 270 ~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 270 AFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555443
No 284
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.36 E-value=6.7e+02 Score=27.93 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=30.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 353 KISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKERE 423 (748)
Q Consensus 353 ~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e 423 (748)
+|...+.+...+.+.+..++..+.+....+-++......+...+.....++..+.--+++-++++...+..
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~q 402 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQ 402 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444334444444444444444444444444444444444444444444444444444433333
No 285
>PLN02939 transferase, transferring glycosyl groups
Probab=34.09 E-value=9.5e+02 Score=29.34 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=6.9
Q ss_pred HhhhHHHHHHHHHHHHH
Q 047747 562 VKGLMNQVDTLQQELES 578 (748)
Q Consensus 562 ~~~l~~~l~~l~~~~~~ 578 (748)
...+...+.++..++..
T Consensus 266 ~~~~~~~~~~~~~~~~~ 282 (977)
T PLN02939 266 RSLLDASLRELESKFIV 282 (977)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344444444444433
No 286
>PHA03011 hypothetical protein; Provisional
Probab=33.56 E-value=2.8e+02 Score=22.94 Aligned_cols=46 Identities=20% Similarity=0.036 Sum_probs=18.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHH
Q 047747 639 VASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTER 684 (748)
Q Consensus 639 l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~ 684 (748)
++.+..+|.++-.++.-++.++.++..-+.+-.+.++.+..++.++
T Consensus 66 ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkL 111 (120)
T PHA03011 66 LDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKL 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 3333334444444444444444444443333333344443333333
No 287
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=33.53 E-value=7.2e+02 Score=27.78 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 047747 137 LDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQK 206 (748)
Q Consensus 137 l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~ 206 (748)
+..+-.+-.+|-...+.|.--++.+..++..+...-.-+..++...+.-...++..+.++..++..++.+
T Consensus 303 VeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~e 372 (832)
T KOG2077|consen 303 VENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAE 372 (832)
T ss_pred HHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444333444444444444444444444444444444333
No 288
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=32.60 E-value=4e+02 Score=24.48 Aligned_cols=11 Identities=27% Similarity=0.271 Sum_probs=4.6
Q ss_pred HHHHhhHHhHH
Q 047747 327 EDLRNSADQLN 337 (748)
Q Consensus 327 t~L~~l~g~l~ 337 (748)
..|+.-++.||
T Consensus 126 ~~lkes~~yLF 136 (155)
T PF06810_consen 126 KALKESDPYLF 136 (155)
T ss_pred HHHHhcCchhc
Confidence 33444444444
No 289
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=32.16 E-value=3.1e+02 Score=23.14 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 136 ELDAATLEVSELKRRMTATSEEKEALN 162 (748)
Q Consensus 136 ~l~~~~~ei~~l~~~l~~l~~eke~l~ 162 (748)
.+..+...+......+..+...+..+.
T Consensus 6 ~l~~~~~~~~~~~~~l~~L~~~~~~~~ 32 (123)
T PF02050_consen 6 ELAEAQQELQEAEEQLEQLQQERQEYQ 32 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 290
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=32.02 E-value=7.5e+02 Score=27.54 Aligned_cols=185 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccchHHHHHH
Q 047747 365 KQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKE 444 (748)
Q Consensus 365 ~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~~~~~~~~~~~~~~~~ 444 (748)
..-+..-......+...+.+...++..+..+-..+..+.+-.+-.++.-...+..++.++... ...........
T Consensus 294 ~ril~sstes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekevak~------~v~~s~~e~~~ 367 (518)
T PF10212_consen 294 RRILLSSTESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEVAKG------QVAESSQESSV 367 (518)
T ss_pred hHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ccccchhhhhh
Q ss_pred H------------------------------------HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 445 L------------------------------------QAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQ 488 (748)
Q Consensus 445 ~------------------------------------e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~ 488 (748)
+ ...-..-..-..-...++..|...+.....+......+...+.
T Consensus 368 l~~~~e~~se~s~~~~~e~~~~t~l~gml~~~~~~~~~E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~ 447 (518)
T PF10212_consen 368 LSEASEQQSEASSQSVDEPLQPTSLSGMLTSTSEQESPEEESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQ 447 (518)
T ss_pred hcccccccccccccccccccccccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhhh
Q 047747 489 ARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKD 555 (748)
Q Consensus 489 ~~l~~l~~~l~~~~~el~~l~~~l~~~~~~~~~~i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l~ 555 (748)
.++...+.....+..++......+..+..++.......+.++..+-..+..+..++..-.++|+.++
T Consensus 448 ~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 448 KRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 291
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=31.87 E-value=7.5e+02 Score=27.46 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047747 135 QELDAATLEVSELKRRMTATSEE 157 (748)
Q Consensus 135 ~~l~~~~~ei~~l~~~l~~l~~e 157 (748)
+-...+..++..++.....+...
T Consensus 20 ~~~~~lqaev~~lr~~~~~~e~~ 42 (531)
T PF15450_consen 20 QWVAELQAEVACLRGHKERCERA 42 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333
No 292
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=31.68 E-value=4e+02 Score=24.19 Aligned_cols=40 Identities=28% Similarity=0.373 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhH
Q 047747 624 EIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHL 663 (748)
Q Consensus 624 ~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l 663 (748)
.+..+..+++.+...+..+...+.++..++..+......+
T Consensus 95 Aie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 95 AIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555444444444444433
No 293
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=31.24 E-value=6.9e+02 Score=26.87 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=17.9
Q ss_pred hhhhhhHHHHHHHHHHHHHhhccC
Q 047747 24 EQLKGNKIEIEDKFKKILKLVQDK 47 (748)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~ 47 (748)
....+|.++-+.|+..+-|+|+--
T Consensus 57 E~ks~n~tdk~~Ki~FLqK~Id~~ 80 (583)
T KOG3809|consen 57 EIKSANNTDKNTKIAFLQKLIDIL 80 (583)
T ss_pred HHhhccCcCchHHHHHHHHHHHHH
Confidence 445567778888888888888843
No 294
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=31.19 E-value=6.5e+02 Score=26.53 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 047747 398 QAQNLIQDLMAESSQLKEKMVEKEREVSSLVE 429 (748)
Q Consensus 398 ~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~ 429 (748)
.+..+++.+..+++.+..+....+..+..+.+
T Consensus 295 ~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d 326 (593)
T KOG4807|consen 295 ALEKEVQALRAQLEAWRLQGEAPQSALRSQED 326 (593)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhHhhhhh
Confidence 35556666666666666666555555555544
No 295
>PF15018 InaF-motif: TRP-interacting helix
Probab=30.73 E-value=21 Score=23.80 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=9.5
Q ss_pred ccccccccCCC
Q 047747 10 IKSFFGSYIDP 20 (748)
Q Consensus 10 ~~~~~~~~~~~ 20 (748)
|.++|+++..|
T Consensus 28 Y~f~W~p~~~p 38 (38)
T PF15018_consen 28 YIFFWDPDMPP 38 (38)
T ss_pred HheeeCCCCCC
Confidence 78999999876
No 296
>PRK11546 zraP zinc resistance protein; Provisional
Probab=30.70 E-value=2.8e+02 Score=25.01 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=0.0
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047747 122 LESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKL 194 (748)
Q Consensus 122 ~~~~~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~ 194 (748)
++++.+..++.+.++.... ..+|+.++..-..|++.+...-.--..++..+..+|..|+.++.......+
T Consensus 44 LT~EQQa~~q~I~~~f~~~---t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQ---TSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred CCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 297
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=30.40 E-value=3.8e+02 Score=27.06 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 581 GQKAVLEVQLEEKTREISEYIIEVQIL 607 (748)
Q Consensus 581 ~~~~~l~~~l~~~~~~~~~~~~~l~~l 607 (748)
.++..+..++..++..++....++..+
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 298
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=30.33 E-value=7.2e+02 Score=26.76 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=4.1
Q ss_pred HHHHHHhHhhH
Q 047747 530 INDLLADLDSL 540 (748)
Q Consensus 530 i~~l~~el~~l 540 (748)
+.++..++..+
T Consensus 376 ieelrkelehl 386 (502)
T KOG0982|consen 376 IEELRKELEHL 386 (502)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 299
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=29.76 E-value=2.3e+02 Score=28.60 Aligned_cols=30 Identities=13% Similarity=0.293 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHHHH
Q 047747 440 AQIKELQAQVTGLELELESLQAHNRDMVVQ 469 (748)
Q Consensus 440 ~~~~~~e~el~~l~~~~~~l~~~l~~l~~~ 469 (748)
..+..++.+|...+.+++.++.++..+...
T Consensus 162 ~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 162 EDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555544443
No 300
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=29.07 E-value=6.2e+02 Score=25.62 Aligned_cols=15 Identities=7% Similarity=0.184 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHH
Q 047747 56 KEPLVELIEGFHSQY 70 (748)
Q Consensus 56 ~~~~~~~~~e~~~~~ 70 (748)
|..+++.+.+|--..
T Consensus 49 RV~Fik~v~~~~~tK 63 (267)
T PF10234_consen 49 RVFFIKSVAEFMATK 63 (267)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888876543
No 301
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=28.88 E-value=5.2e+02 Score=24.64 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 047747 149 RRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQL 228 (748)
Q Consensus 149 ~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l 228 (748)
.-+..|+.+......-++.....+...+..+.....-.......+..+..-+......+.....-....+.++.....-|
T Consensus 67 ~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLL 146 (188)
T PF05335_consen 67 QIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLL 146 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444445555444444555555544445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 229 TARSEEKEALNLEYQTALSKIQEA 252 (748)
Q Consensus 229 ~~l~~e~~~~~~~l~e~~~~~~~~ 252 (748)
......++.+...+......|...
T Consensus 147 eaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 147 EAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554444433
No 302
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.68 E-value=7.6e+02 Score=26.56 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHH
Q 047747 525 NLTAQINDLLADLDSLHNEKSKLE 548 (748)
Q Consensus 525 ~l~~~i~~l~~el~~l~~~~~~l~ 548 (748)
.+..++..++...-.+..+..++.
T Consensus 407 eleqevkrLrq~nr~l~eqneeln 430 (502)
T KOG0982|consen 407 ELEQEVKRLRQPNRILSEQNEELN 430 (502)
T ss_pred HHHHHHHHhccccchhhhhhhhhh
Confidence 333444444444444444444443
No 303
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=28.67 E-value=1.1e+02 Score=22.34 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=23.8
Q ss_pred hHHHHHHHhhhhhhhhHHHHHHHHhhcchHhhhccCCC
Q 047747 688 LSSLQEKHINVENKASAQITAMAAQASLPQISRNGAGA 725 (748)
Q Consensus 688 l~~l~~~l~~~~~~a~~~~~~l~~~i~~Lk~~l~~lG~ 725 (748)
+..++.+|........+.++++..+|+.|+..|..+..
T Consensus 12 L~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~ 49 (54)
T PF06825_consen 12 LQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMT 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44455555555455567888999999999998887643
No 304
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.36 E-value=2.8e+02 Score=30.47 Aligned_cols=16 Identities=0% Similarity=-0.142 Sum_probs=8.5
Q ss_pred HHHHHHHHhhHHhHHHHHHH
Q 047747 323 EKIAEDLRNSADQLNEEKLV 342 (748)
Q Consensus 323 ~~~Vt~L~~l~g~l~~~~g~ 342 (748)
-++|+ ..|.++...+.
T Consensus 313 GrvVs----k~G~ila~A~~ 328 (475)
T PRK13729 313 GEVVM----RNGKILGWAWG 328 (475)
T ss_pred ceEEe----cchHHHHHHHH
Confidence 34566 66666555443
No 305
>PF15294 Leu_zip: Leucine zipper
Probab=28.09 E-value=6.5e+02 Score=25.57 Aligned_cols=45 Identities=24% Similarity=0.272 Sum_probs=28.3
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 445 LQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQA 489 (748)
Q Consensus 445 ~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~ 489 (748)
+..++..|+.+...+...+..++.....+-.+-..++..+.+++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666655555
No 306
>PRK14011 prefoldin subunit alpha; Provisional
Probab=27.24 E-value=4.7e+02 Score=23.67 Aligned_cols=32 Identities=22% Similarity=0.025 Sum_probs=12.6
Q ss_pred HHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHH
Q 047747 652 QMRLKIEEGFHLTEEKLGLLDGIFELEKTLTE 683 (748)
Q Consensus 652 ~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~ 683 (748)
.+.+++..+..+......+...+.++...+..
T Consensus 89 A~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~ 120 (144)
T PRK14011 89 VIEDFKKSVEELDKTKKEGNKKIEELNKEITK 120 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333333333333333
No 307
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=26.79 E-value=7.6e+02 Score=25.88 Aligned_cols=6 Identities=0% Similarity=0.152 Sum_probs=2.3
Q ss_pred hHHHHH
Q 047747 266 LNNDML 271 (748)
Q Consensus 266 ~~~~~~ 271 (748)
++++|+
T Consensus 119 yKdEYE 124 (330)
T PF07851_consen 119 YKDEYE 124 (330)
T ss_pred hhhhHH
Confidence 333343
No 308
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=26.70 E-value=1.2e+03 Score=28.27 Aligned_cols=69 Identities=22% Similarity=0.166 Sum_probs=38.4
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhhh----hhhHHHHHHHHhhcchHhhhccCCCCceee
Q 047747 662 HLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVEN----KASAQITAMAAQASLPQISRNGAGAGSCLV 730 (748)
Q Consensus 662 ~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~~~~----~a~~~~~~l~~~i~~Lk~~l~~lG~~~~~~ 730 (748)
....++......|..++.++......++.+..++....+ ....-+..+..+-..+-..+...|.+++.+
T Consensus 860 ~~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~Fs~~F~~mg~aGeV~L~~ 932 (1072)
T KOG0979|consen 860 DAVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINERFSQLFSSMGCAGEVSLEV 932 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccCceEEecc
Confidence 344455555555555555555555555555555554421 112334445555566677777778777765
No 309
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=26.64 E-value=56 Score=28.33 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHH
Q 047747 633 KSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIF 675 (748)
Q Consensus 633 ~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~ 675 (748)
..|...+..+...-..+...+.+++.+..+|..-+..++..+.
T Consensus 60 ~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~ 102 (116)
T PF05064_consen 60 SKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQVE 102 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444445444444444443
No 310
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=26.57 E-value=7.3e+02 Score=25.63 Aligned_cols=29 Identities=10% Similarity=0.000 Sum_probs=16.0
Q ss_pred hhcchHhhhccCCCCceeeeccCcchhhc
Q 047747 712 QASLPQISRNGAGAGSCLVLHSPYSKIIL 740 (748)
Q Consensus 712 ~i~~Lk~~l~~lG~~~~~~~~~~~~~~~~ 740 (748)
-...+.-..+.+|-...+.|..-+.+.|=
T Consensus 254 ~~~qa~y~A~Dlgl~~~~~~~~~~~~yi~ 282 (301)
T PF06120_consen 254 ARKQAEYEADDLGLTGDPQYQENREKYIN 282 (301)
T ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHH
Confidence 33444445556666666566666665553
No 311
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=26.31 E-value=3e+02 Score=21.08 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 224 MKRQLTARSEEKEALNLEYQTALSKI 249 (748)
Q Consensus 224 l~~~l~~l~~e~~~~~~~l~e~~~~~ 249 (748)
+...+..+..+...+..+...+..++
T Consensus 26 Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 26 LRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 312
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=26.03 E-value=8.1e+02 Score=25.97 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=9.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 047747 351 RGKISNMEQQLESSKQEVSDLS 372 (748)
Q Consensus 351 ~~~l~~le~~l~~~~~~l~~l~ 372 (748)
..++..++.++..++..+..++
T Consensus 176 ~~ql~~~~~~l~~ae~~l~~fr 197 (362)
T TIGR01010 176 ENEVKEAEQRLNATKAELLKYQ 197 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 313
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=25.88 E-value=8.9e+02 Score=26.42 Aligned_cols=12 Identities=0% Similarity=0.005 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHH
Q 047747 462 HNRDMVVQIDSK 473 (748)
Q Consensus 462 ~l~~l~~~l~~~ 473 (748)
++..++.++..+
T Consensus 152 Ev~~LRreLavL 163 (424)
T PF03915_consen 152 EVQSLRRELAVL 163 (424)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 314
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=25.87 E-value=7.6e+02 Score=25.62 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 047747 439 LAQIKELQAQVTGLELELESL 459 (748)
Q Consensus 439 ~~~~~~~e~el~~l~~~~~~l 459 (748)
...++..+..+......+..+
T Consensus 134 ~~~~d~~~~~~~~a~~~l~~~ 154 (327)
T TIGR02971 134 ASDLDSKALKLRTAEEELEEA 154 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 315
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=25.07 E-value=5e+02 Score=23.22 Aligned_cols=14 Identities=7% Similarity=-0.054 Sum_probs=5.5
Q ss_pred HhhcchHhhhccCC
Q 047747 711 AQASLPQISRNGAG 724 (748)
Q Consensus 711 ~~i~~Lk~~l~~lG 724 (748)
..+..++.+|..+|
T Consensus 98 ~K~~kyk~rLk~LG 111 (136)
T PF04871_consen 98 EKRKKYKERLKELG 111 (136)
T ss_pred HHHHHHHHHHHHcC
Confidence 33333344444443
No 316
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=24.51 E-value=4.9e+02 Score=22.89 Aligned_cols=110 Identities=12% Similarity=0.167 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHH
Q 047747 127 QKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAG--------------------ELIRNLKLEA 186 (748)
Q Consensus 127 ~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le--------------------~ei~~l~~~~ 186 (748)
.+.|...+.+|..+..+|..++..+.....-...-...++.....+.+.+ ..+..+..++
T Consensus 7 ~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a~~dv 86 (136)
T PF11570_consen 7 ERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRAQKDV 86 (136)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 187 ESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKE 236 (748)
Q Consensus 187 ~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~ 236 (748)
..-+..+.....++..+...+......+.........-.......+..+.
T Consensus 87 ~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAenkl~ 136 (136)
T PF11570_consen 87 QNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAENKLN 136 (136)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhccC
No 317
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=24.23 E-value=7.2e+02 Score=24.73 Aligned_cols=9 Identities=11% Similarity=0.287 Sum_probs=3.7
Q ss_pred HHHhHHHHH
Q 047747 263 AESLNNDML 271 (748)
Q Consensus 263 l~~~~~~~~ 271 (748)
|..+.+.|.
T Consensus 184 l~~~~~~w~ 192 (240)
T cd07672 184 LDKIREDWQ 192 (240)
T ss_pred HHHHHHHHH
Confidence 334444443
No 318
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.87 E-value=5.8e+02 Score=23.51 Aligned_cols=12 Identities=8% Similarity=0.407 Sum_probs=7.6
Q ss_pred HHHHHhhccCch
Q 047747 38 KKILKLVQDKDL 49 (748)
Q Consensus 38 ~~~~~~~~~~~~ 49 (748)
..+|+-|.+++-
T Consensus 17 EtVLrhIReG~T 28 (161)
T TIGR02894 17 ETVLRHIREGST 28 (161)
T ss_pred HHHHHHHhcchH
Confidence 346777777763
No 319
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=23.75 E-value=5.7e+02 Score=23.42 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 130 TDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAES 188 (748)
Q Consensus 130 ~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~ 188 (748)
|..+-......+..+......+..++.++......+..-...+..++..+..+......
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554555555566666666666666666666655555555555555555444444433
No 320
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=23.62 E-value=5.7e+02 Score=23.40 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=11.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHhHHHH
Q 047747 353 KISNMEQQLESSKQEVSDLSQNLTATEE 380 (748)
Q Consensus 353 ~l~~le~~l~~~~~~l~~l~~~l~~~~~ 380 (748)
....++..+......+..|+.++...+.
T Consensus 28 ~~~~LE~qL~~~~~~l~lLq~e~~~~e~ 55 (160)
T PF13094_consen 28 RKRALERQLAANLHQLELLQEEIEKEEA 55 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333
No 321
>PF07536 HWE_HK: HWE histidine kinase; InterPro: IPR011102 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as IPR003661 from INTERPRO []. In [], the HWE family was defined by the presence of conserved a H residue and a WXE motifs and was limited to members of the proteobacteria. However, many homologues of this domain are lack the WXE motif. Furthermore, homologues are found in a wide range of Gram-positive and Gram-negative bacteria as well as in several archaea.; GO: 0004673 protein histidine kinase activity
Probab=22.99 E-value=1.3e+02 Score=24.14 Aligned_cols=48 Identities=25% Similarity=0.341 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhccCch--hhhccChhhHHHHHHHHHHHHHHHHHHHhhhHH
Q 047747 32 EIEDKFKKILKLVQDKDL--QEKDGIKEPLVELIEGFHSQYQSLYAQYDNLRG 82 (748)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~ 82 (748)
||.++||.++-+|..=.- +..+ +.+..|...|.....+|+..|+-+..
T Consensus 1 EL~HRvKN~lavv~ai~~~t~r~~---~s~~~~~~~~~~Rl~ALa~a~~ll~~ 50 (83)
T PF07536_consen 1 ELNHRVKNLLAVVQAIARQTARSA---ASVEEFAEAFSGRLQALARAHDLLSR 50 (83)
T ss_pred CchhHHHHHHHHHHHHHHHHcccC---CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999874421 1111 35788999999999999999998653
No 322
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=22.91 E-value=8.7e+02 Score=26.63 Aligned_cols=41 Identities=10% Similarity=0.029 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhH
Q 047747 623 EEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHL 663 (748)
Q Consensus 623 ~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l 663 (748)
.+...+...+......++..-.+...++..++.++.++..+
T Consensus 63 tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i 103 (604)
T KOG3564|consen 63 TKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLI 103 (604)
T ss_pred HhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333333333333333333333334444444444444333
No 323
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=22.72 E-value=3.9e+02 Score=21.12 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=5.7
Q ss_pred HhhHHHHHHHHHHhH
Q 047747 449 VTGLELELESLQAHN 463 (748)
Q Consensus 449 l~~l~~~~~~l~~~l 463 (748)
+..+..++..++..+
T Consensus 13 Ik~vd~KVdaLq~~V 27 (75)
T PF05531_consen 13 IKAVDDKVDALQTQV 27 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 324
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=22.72 E-value=6.4e+02 Score=23.62 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 047747 598 SEYIIEVQILKEEIVN 613 (748)
Q Consensus 598 ~~~~~~l~~l~~~l~~ 613 (748)
..+..+++..+.++-.
T Consensus 141 ~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 141 ANLRTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 325
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=22.60 E-value=6.2e+02 Score=23.81 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047747 473 KAAAAKQLEEENLQLQARISD 493 (748)
Q Consensus 473 ~~~~~~~l~~~~~~l~~~l~~ 493 (748)
++.+++++-..+..|...+..
T Consensus 123 hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 123 HRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444
No 326
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=21.98 E-value=5.7e+02 Score=22.77 Aligned_cols=40 Identities=25% Similarity=0.191 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHH
Q 047747 627 SLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEE 666 (748)
Q Consensus 627 ~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~ 666 (748)
+++.+|..|+.+...+..-...+..++..++..+...+..
T Consensus 29 EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 29 EMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444333
No 327
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=21.54 E-value=1.5e+02 Score=25.64 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 047747 627 SLTARIKSLELEVASLGNQKSDLEEQMRLKIE 658 (748)
Q Consensus 627 ~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~ 658 (748)
.+......+...++.+..+..+|..-+..++.
T Consensus 68 ~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~ 99 (116)
T PF05064_consen 68 KAESEQKRLDQELDFIEAQQKELEELLDPLEK 99 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344433333333333333333
No 328
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=21.30 E-value=5e+02 Score=21.84 Aligned_cols=12 Identities=33% Similarity=0.507 Sum_probs=4.3
Q ss_pred HHHhhhhHHHHH
Q 047747 639 VASLGNQKSDLE 650 (748)
Q Consensus 639 l~~l~~e~~~l~ 650 (748)
+...+.++.++.
T Consensus 62 V~~QGEqIkel~ 73 (102)
T PF01519_consen 62 VDKQGEQIKELQ 73 (102)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 329
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.29 E-value=5.1e+02 Score=21.96 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 394 NEFQQAQNLIQDLMAESSQLKEKMVE 419 (748)
Q Consensus 394 ~~i~~l~~~i~~l~~~~~~l~~~l~~ 419 (748)
..++.+...+..+..++..+..++..
T Consensus 65 ~dv~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 65 DDVHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444444444444444444433
No 330
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=20.90 E-value=1.2e+03 Score=26.20 Aligned_cols=6 Identities=17% Similarity=0.102 Sum_probs=2.1
Q ss_pred hhccCC
Q 047747 719 SRNGAG 724 (748)
Q Consensus 719 ~l~~lG 724 (748)
++.-+|
T Consensus 492 ~~~ypg 497 (514)
T TIGR03319 492 ELEYPG 497 (514)
T ss_pred hCcCCC
Confidence 333333
No 331
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=20.43 E-value=1.1e+03 Score=25.69 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhhccchHHHHHHHHHHHhhHHHHHHHHHHhH
Q 047747 409 ESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQAHN 463 (748)
Q Consensus 409 ~~~~l~~~l~~le~e~~~l~~~~~~~~~~~~~~~~~~e~el~~l~~~~~~l~~~l 463 (748)
-+..|+.++..++.++..+.. .......++..++..+..|+.++...+.++
T Consensus 287 lI~~Le~qLa~~~aeL~~L~~----~~~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 287 LIAGFETQLAEAKAEYAQLMV----NGLDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----hcCCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444433 223333455555555555555555544444
Done!