Query 047747
Match_columns 748
No_of_seqs 611 out of 3316
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 04:09:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.3 7.9E-08 2.7E-12 97.8 42.6 73 623-695 209-281 (284)
2 1i84_S Smooth muscle myosin he 99.0 4.6E-10 1.6E-14 136.2 11.4 11 353-363 865-875 (1184)
3 1i84_S Smooth muscle myosin he 99.0 1E-09 3.6E-14 133.1 11.0 100 630-729 1067-1169(1184)
4 3l51_B Structural maintenance 98.0 2E-08 7E-13 92.7 -11.2 75 262-345 25-158 (166)
5 3na7_A HP0958; flagellar bioge 98.0 0.00036 1.2E-08 69.1 18.5 42 626-667 93-134 (256)
6 2v71_A Nuclear distribution pr 97.7 0.012 4.2E-07 53.6 22.2 7 712-718 169-175 (189)
7 3na7_A HP0958; flagellar bioge 97.7 0.0064 2.2E-07 60.0 21.9 25 395-419 54-78 (256)
8 3nwc_A SMC protein; structural 97.5 8E-08 2.7E-12 90.1 -14.8 87 249-345 21-166 (189)
9 3o0z_A RHO-associated protein 97.2 0.098 3.4E-06 46.4 20.8 44 459-502 95-138 (168)
10 2wd5_A Structural maintenance 97.1 9.8E-07 3.4E-11 86.6 -14.0 75 262-345 61-195 (233)
11 3l51_A Structural maintenance 96.9 1.9E-06 6.6E-11 79.0 -12.8 75 262-344 23-160 (161)
12 3o0z_A RHO-associated protein 96.8 0.27 9.1E-06 43.6 20.7 45 451-495 94-138 (168)
13 2fxo_A Myosin heavy chain, car 96.6 0.16 5.5E-06 43.8 17.2 104 128-231 20-123 (129)
14 3vkg_A Dynein heavy chain, cyt 96.6 0.7 2.4E-05 60.7 30.1 43 620-662 2060-2102(3245)
15 2wd5_B Structural maintenance 96.5 3.2E-05 1.1E-09 74.8 -7.8 75 262-345 55-184 (213)
16 2efr_A General control protein 96.5 0.42 1.5E-05 42.1 23.3 63 357-419 26-88 (155)
17 2efr_A General control protein 96.2 0.59 2E-05 41.2 23.5 18 598-615 73-90 (155)
18 1gxj_A SMC, chromosome segrega 96.0 3.1E-05 1.1E-09 73.1 -10.6 75 262-345 38-172 (186)
19 1gxl_A SMC, chromosome segrega 96.0 4E-05 1.4E-09 74.1 -10.4 75 262-345 50-184 (213)
20 3u1c_A Tropomyosin alpha-1 cha 95.6 0.63 2.1E-05 38.0 15.0 83 146-228 6-95 (101)
21 3u1c_A Tropomyosin alpha-1 cha 95.4 0.86 2.9E-05 37.2 16.0 33 188-220 62-94 (101)
22 2fxo_A Myosin heavy chain, car 95.3 1.3 4.3E-05 38.1 18.7 16 660-675 99-114 (129)
23 3u59_A Tropomyosin beta chain; 95.0 1.1 3.7E-05 36.7 14.5 23 146-168 6-28 (101)
24 3u59_A Tropomyosin beta chain; 94.4 1.8 6E-05 35.4 15.8 61 170-230 37-97 (101)
25 2dfs_A Myosin-5A; myosin-V, in 94.3 1.4 4.7E-05 52.5 19.1 9 78-86 413-421 (1080)
26 3ol1_A Vimentin; structural ge 93.6 2.9 9.9E-05 35.3 16.2 69 122-190 14-82 (119)
27 2dfs_A Myosin-5A; myosin-V, in 93.5 1.7 5.8E-05 51.7 17.9 16 32-48 498-513 (1080)
28 3ol1_A Vimentin; structural ge 92.9 3.2 0.00011 34.9 13.9 6 706-711 110-115 (119)
29 3oja_B Anopheles plasmodium-re 91.7 1.7 6E-05 48.4 14.4 33 658-690 544-576 (597)
30 1ic2_A Tropomyosin alpha chain 91.7 3.8 0.00013 31.8 12.1 32 147-178 4-35 (81)
31 3tnu_B Keratin, type II cytosk 91.6 3.7 0.00013 35.2 13.1 12 403-414 45-56 (129)
32 3swk_A Vimentin; cytoskeleton, 90.1 4.3 0.00015 31.9 10.9 34 623-656 49-82 (86)
33 3swk_A Vimentin; cytoskeleton, 89.9 6 0.0002 31.1 11.8 56 132-187 4-59 (86)
34 2eqb_B RAB guanine nucleotide 89.5 6.9 0.00024 31.1 13.9 37 152-188 22-58 (97)
35 2jee_A YIIU; FTSZ, septum, coi 88.5 7 0.00024 30.0 11.8 65 174-238 10-74 (81)
36 2v66_B Nuclear distribution pr 88.2 9.7 0.00033 31.3 16.1 21 146-166 7-27 (111)
37 1ic2_A Tropomyosin alpha chain 87.2 8.8 0.0003 29.7 11.5 22 220-241 42-63 (81)
38 3hnw_A Uncharacterized protein 86.3 16 0.00053 31.6 14.5 96 137-233 34-131 (138)
39 3q8t_A Beclin-1; autophagy, AT 85.7 12 0.00042 29.9 14.9 29 214-242 55-83 (96)
40 2v4h_A NF-kappa-B essential mo 85.2 11 0.00038 30.5 10.4 40 684-723 67-109 (110)
41 3q8t_A Beclin-1; autophagy, AT 85.1 13 0.00045 29.8 15.2 42 202-243 50-91 (96)
42 1x79_B RAB GTPase binding effe 84.6 15 0.00053 30.1 12.7 24 520-543 76-99 (112)
43 2v66_B Nuclear distribution pr 84.4 16 0.00054 30.0 16.0 30 521-550 35-64 (111)
44 2ocy_A RAB guanine nucleotide 83.5 22 0.00076 31.1 21.0 25 580-604 114-138 (154)
45 3a7p_A Autophagy protein 16; c 83.1 22 0.00074 30.8 12.1 61 448-508 69-129 (152)
46 2e7s_A RAB guanine nucleotide 80.9 8.7 0.0003 32.7 8.8 36 207-242 91-126 (135)
47 3bas_A Myosin heavy chain, str 80.7 19 0.00065 28.4 11.9 12 142-153 21-32 (89)
48 3mq9_A Bone marrow stromal ant 80.7 28 0.00095 37.2 15.5 67 478-544 400-466 (471)
49 3i00_A HIP-I, huntingtin-inter 80.5 13 0.00044 31.2 9.6 19 144-162 17-35 (120)
50 4h22_A Leucine-rich repeat fli 78.6 16 0.00054 29.3 9.0 29 396-424 18-46 (103)
51 3tul_A Cell invasion protein S 73.0 43 0.0015 28.5 11.5 51 618-668 71-124 (158)
52 1deq_A Fibrinogen (alpha chain 72.6 84 0.0029 31.7 16.6 22 530-551 136-157 (390)
53 4gkw_A Spindle assembly abnorm 70.7 44 0.0015 27.7 21.6 42 347-388 13-54 (167)
54 1fxk_A Prefoldin; archaeal pro 68.9 45 0.0015 27.0 11.6 25 525-549 69-93 (107)
55 2zqm_A Prefoldin beta subunit 68.0 50 0.0017 27.2 13.1 27 525-551 74-100 (117)
56 3bas_A Myosin heavy chain, str 65.7 47 0.0016 26.1 12.4 28 135-162 28-55 (89)
57 2w83_C C-JUN-amino-terminal ki 63.8 44 0.0015 25.0 10.2 61 136-196 10-70 (77)
58 4h22_A Leucine-rich repeat fli 62.7 58 0.002 26.1 10.7 14 576-589 18-31 (103)
59 3mq9_A Bone marrow stromal ant 59.2 1.6E+02 0.0053 31.2 15.2 22 9-33 20-41 (471)
60 3oja_A Leucine-rich immune mol 55.4 2.1E+02 0.0072 30.3 18.8 11 474-484 441-451 (487)
61 3l4q_C Phosphatidylinositol 3- 49.5 1.4E+02 0.0048 26.5 16.2 21 574-594 31-51 (170)
62 3mq7_A Bone marrow stromal ant 48.9 1.1E+02 0.0037 25.0 14.7 28 214-241 73-100 (121)
63 3iv1_A Tumor susceptibility ge 46.3 95 0.0032 23.6 10.7 25 130-154 13-37 (78)
64 3i00_A HIP-I, huntingtin-inter 46.2 1.3E+02 0.0044 25.1 11.1 18 130-147 17-34 (120)
65 1go4_E MAD1 (mitotic arrest de 42.6 92 0.0032 24.9 7.2 32 522-553 13-44 (100)
66 2xzr_A Immunoglobulin-binding 41.7 1.2E+02 0.0042 23.6 16.0 14 670-683 88-101 (114)
67 2w83_C C-JUN-amino-terminal ki 41.6 1.1E+02 0.0037 22.9 9.8 19 144-162 11-29 (77)
68 2i1j_A Moesin; FERM, coiled-co 39.3 44 0.0015 36.6 6.7 8 22-29 55-62 (575)
69 2i1j_A Moesin; FERM, coiled-co 38.3 47 0.0016 36.4 6.8 93 159-251 331-423 (575)
70 3qh9_A Liprin-beta-2; coiled-c 35.9 1.4E+02 0.0049 22.6 10.4 25 142-166 26-50 (81)
71 4emc_A Monopolin complex subun 35.7 2.4E+02 0.0084 25.3 9.7 32 580-611 26-57 (190)
72 2xdj_A Uncharacterized protein 35.3 1.5E+02 0.0052 22.8 10.1 15 397-411 37-51 (83)
73 2yy0_A C-MYC-binding protein; 34.8 56 0.0019 22.8 4.3 33 343-375 17-49 (53)
74 3l4q_C Phosphatidylinositol 3- 34.5 2.5E+02 0.0084 25.0 17.3 45 450-494 99-143 (170)
75 3vp9_A General transcriptional 32.2 83 0.0028 24.7 5.3 17 708-724 72-88 (92)
76 4emc_A Monopolin complex subun 31.1 2.1E+02 0.007 25.8 8.3 36 639-674 22-57 (190)
77 3iox_A AGI/II, PA; alpha helix 31.0 4.9E+02 0.017 27.3 15.8 9 532-540 13-21 (497)
78 2oqq_A Transcription factor HY 30.5 1.1E+02 0.0039 19.9 5.1 25 636-660 9-33 (42)
79 3uux_B Mitochondrial division 30.0 3.5E+02 0.012 25.3 11.2 16 641-656 209-224 (242)
80 2lw1_A ABC transporter ATP-bin 26.8 2.2E+02 0.0076 22.0 9.4 23 530-552 24-46 (89)
81 2no2_A HIP-I, huntingtin-inter 26.3 2.6E+02 0.0089 22.7 15.2 97 518-614 5-101 (107)
82 2l5g_A GPS2 protein, G protein 24.6 1.3E+02 0.0046 18.9 4.1 27 137-163 10-36 (38)
83 2w6a_A ARF GTPase-activating p 24.3 1.9E+02 0.0065 20.4 8.2 45 440-484 13-57 (63)
84 3qne_A Seryl-tRNA synthetase, 23.8 3.4E+02 0.012 28.7 10.1 23 402-424 41-63 (485)
85 2q6q_A Spindle POLE BODY compo 23.1 2.2E+02 0.0075 20.7 8.3 30 585-614 7-36 (74)
86 1go4_E MAD1 (mitotic arrest de 22.8 2.9E+02 0.01 22.0 9.5 29 129-157 13-41 (100)
87 1jnm_A Proto-oncogene C-JUN; B 22.3 1.1E+02 0.0039 21.9 4.3 25 635-659 27-51 (62)
88 3uux_B Mitochondrial division 22.3 4.9E+02 0.017 24.4 11.6 25 25-49 37-61 (242)
89 3efd_K KCSA; helix bundle, C-t 21.4 93 0.0032 18.1 2.7 20 64-83 7-26 (30)
90 1wle_A Seryl-tRNA synthetase; 21.3 6.2E+02 0.021 26.9 11.6 28 212-239 123-150 (501)
91 3cl3_D NF-kappa-B essential mo 21.0 2.5E+02 0.0086 23.3 6.4 98 382-479 4-101 (130)
92 1gd2_E Transcription factor PA 20.3 1.9E+02 0.0064 21.5 5.1 42 629-670 28-69 (70)
93 2k48_A Nucleoprotein; viral pr 20.1 3.4E+02 0.012 21.7 10.3 6 452-457 47-52 (107)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.31 E-value=7.9e-08 Score=97.76 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 047747 623 EEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKH 695 (748)
Q Consensus 623 ~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l 695 (748)
..+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...++.+...+
T Consensus 209 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 209 AQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444445555555555555555555555555555555555555555666655665555555555544
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.03 E-value=4.6e-10 Score=136.19 Aligned_cols=11 Identities=0% Similarity=0.259 Sum_probs=4.0
Q ss_pred HHhHHHHHHHH
Q 047747 353 KISNMEQQLES 363 (748)
Q Consensus 353 ~l~~le~~l~~ 363 (748)
++..++..+..
T Consensus 865 eL~el~~~L~~ 875 (1184)
T 1i84_S 865 ELQRTKERQQK 875 (1184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.97 E-value=1e-09 Score=133.10 Aligned_cols=100 Identities=20% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHHHHHHHhhhh---hhhhHHH
Q 047747 630 ARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGIFELEKTLTERGSELSSLQEKHINVE---NKASAQI 706 (748)
Q Consensus 630 ~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~l~~~l~~~~---~~a~~~~ 706 (748)
..+..++..+..+..++..+...+..++.++..+...+..+...+..++..+.++...+..+.+.+.... .......
T Consensus 1067 ~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~ 1146 (1184)
T 1i84_S 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQK 1146 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444444444444444444445444444444443331 1223456
Q ss_pred HHHHHhhcchHhhhccCCCCcee
Q 047747 707 TAMAAQASLPQISRNGAGAGSCL 729 (748)
Q Consensus 707 ~~l~~~i~~Lk~~l~~lG~~~~~ 729 (748)
..+...+..|+..|..+|+.+..
T Consensus 1147 ~~L~~ele~L~~~Ieel~~vn~a 1169 (1184)
T 1i84_S 1147 RDLSEELEALKTELEDTLDTTAT 1169 (1184)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 67889999999999999988643
No 4
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=97.97 E-value=2e-08 Score=92.67 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=64.5
Q ss_pred HHHHhHHHHHhhhhhH-------------------HHHHHhhhHhhhHHHHHHHHHHHhHh-------------------
Q 047747 262 EAESLNNDMLEGLAVN-------------------AELKQKLSIAGELEAELNHRLEDISR------------------- 303 (748)
Q Consensus 262 el~~~~~~~~~ai~~~-------------------~~Lk~~~~~~gr~t~~~~l~L~~i~~------------------- 303 (748)
+|+.++++|..||+++ +|||+++ .||+| |+||+.|++
T Consensus 25 dLi~v~~~y~~Aie~alg~l~~iVVd~~~~A~~~i~~Lk~~~--~GRat---flpL~~i~~~~~~~~~~~~~~~~~~a~d 99 (166)
T 3l51_B 25 DLGAIDEKYDIAISSCCHALDYIVVDSIDTAQECVNFLKKHN--IGIAT---FIGLDKMTVWAKKMSKIQTPENTPRLFD 99 (166)
T ss_dssp GSCBCCGGGHHHHHHHCGGGGSEEESCHHHHHHHHHHHHHTT--CCCCC---EEEGGGTGGGTTSCCCCCCGGGCCBHHH
T ss_pred HheeeCHHHHHHHHHHHhhCceEEECCHHHHHHHHHHHHHcC--CCeEE---EEECcccccccccccccccccchhhHhh
Confidence 8888999999999884 8999999 99999 999987641
Q ss_pred ----------------hhhhhhHH-HHHHHHHhH---hhHHHHHHHHhhHHhHHHHHHH-hhH
Q 047747 304 ----------------DKDNLIME-KETVLRRVE---EGEKIAEDLRNSADQLNEEKLV-LGK 345 (748)
Q Consensus 304 ----------------l~~~lv~e-l~~a~~~~~---~~~~~Vt~L~~l~g~l~~~~g~-~~~ 345 (748)
||+|+||+ ++.|.+... .++++|| ++|++++++|+ ||+
T Consensus 100 lv~~~d~~~~~a~~~llg~tlVv~dl~~A~~~~~~~~~~~r~VT----ldGdli~~~G~~tGG 158 (166)
T 3l51_B 100 LVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQRDRRWRVVT----LQGQIIEQSGTMSGG 158 (166)
T ss_dssp HCBCSCHHHHHHHHHHHTTCEEESSHHHHHHHHBCSSCBCCEEE----TTSCEECTTCCEEEC
T ss_pred eeeCCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhhCCCcEEEE----CCCEEEeCCEEEECC
Confidence 99999999 999966552 4788999 99999999998 764
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.96 E-value=0.00036 Score=69.08 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHH
Q 047747 626 ESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEK 667 (748)
Q Consensus 626 ~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~ 667 (748)
..+..++..+...+..+..++.++.+++..+...+..+...+
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444434444444433333333333333
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.71 E-value=0.012 Score=53.59 Aligned_cols=7 Identities=14% Similarity=-0.130 Sum_probs=0.0
Q ss_pred hhcchHh
Q 047747 712 QASLPQI 718 (748)
Q Consensus 712 ~i~~Lk~ 718 (748)
.+..|+.
T Consensus 169 E~rDLk~ 175 (189)
T 2v71_A 169 EARDLRQ 175 (189)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 3333333
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.67 E-value=0.0064 Score=60.00 Aligned_cols=25 Identities=8% Similarity=-0.035 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 395 EFQQAQNLIQDLMAESSQLKEKMVE 419 (748)
Q Consensus 395 ~i~~l~~~i~~l~~~~~~l~~~l~~ 419 (748)
.+..+...+..+...+.....++..
T Consensus 54 ~l~d~~~~~~~~e~~i~~~~~ri~~ 78 (256)
T 3na7_A 54 EKLALKLQVSKNEQTLQDTNAKIAS 78 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 8
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=97.54 E-value=8e-08 Score=90.15 Aligned_cols=87 Identities=18% Similarity=0.155 Sum_probs=68.5
Q ss_pred HHHHHHHHHHH--------HHHHHHhHHH-HHhhhhhH--------------------HHHHHhhhHhhhHHHHHHHHHH
Q 047747 249 IQEAEEIIRNL--------KLEAESLNND-MLEGLAVN--------------------AELKQKLSIAGELEAELNHRLE 299 (748)
Q Consensus 249 ~~~~~~~l~~~--------~~el~~~~~~-~~~ai~~~--------------------~~Lk~~~~~~gr~t~~~~l~L~ 299 (748)
+..+++.++.. -.+++.++++ |..||+++ .|||..+ .||+| |+||+
T Consensus 21 ~~~~v~~l~~~~~~gv~G~l~dLi~V~~~kye~Ave~aLG~~l~~iVVd~~~~A~~~i~~Lk~~~--~GRat---flpl~ 95 (189)
T 3nwc_A 21 GNRAAEELKRSGIGGIYGTLAELIKVKDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLKEHK--LGRLT---FLPLN 95 (189)
T ss_dssp SCTHHHHHTTSCCCSEEEEHHHHCEESCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHTT--CCCCC---EEETT
T ss_pred HHHHHHHHHhcCCCCceEEHHHheeeChhhHHHHHHHHhccccccEEECCHHHHHHHHHHHHhcC--CCceE---EEECC
Confidence 45566666532 2399999888 99999884 7999988 99999 99997
Q ss_pred HhHh----------------------------hhhhhhHH-HHHHHHHhHhhHHHHHHHHhhHHhHHHHHHH-hhH
Q 047747 300 DISR----------------------------DKDNLIME-KETVLRRVEEGEKIAEDLRNSADQLNEEKLV-LGK 345 (748)
Q Consensus 300 ~i~~----------------------------l~~~lv~e-l~~a~~~~~~~~~~Vt~L~~l~g~l~~~~g~-~~~ 345 (748)
.+++ ||+|+||+ ++.|.+. .+++++|| ++|+++.++|+ +|+
T Consensus 96 ~i~~~~~~~~~g~~a~dlv~~d~~~~~a~~~llg~tlvv~dl~~A~~l-~~~~r~VT----ldGd~i~~~G~~tGG 166 (189)
T 3nwc_A 96 KIKPKHVDSSVGLPAVDVIEYDQKIENAVKFALGDTVIVNSMEEARPH-IGKVRMVT----IEGELYERSGAITGG 166 (189)
T ss_dssp TCCCCCCCSCSSEEGGGGEECCGGGHHHHHHHHTTEEEESCSGGGGGG-TTTSEEEE----TTSCEECTTSCEECS
T ss_pred ccccccCCCCCCcEEeeeeccCHHHHHHHHHHhCCEEEECCHHHHHHH-hCCCeEEe----CCCcEEECCEEEEeC
Confidence 5421 99999999 9999544 44788999 99999999887 753
No 9
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=97.21 E-value=0.098 Score=46.38 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=19.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047747 459 LQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERG 502 (748)
Q Consensus 459 l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~ 502 (748)
++..+..+..++.........+......+...+..++.....+.
T Consensus 95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444444444444444444444445555544444433
No 10
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=97.06 E-value=9.8e-07 Score=86.64 Aligned_cols=75 Identities=12% Similarity=0.029 Sum_probs=59.6
Q ss_pred HHHHh-HHHHHhhhhhH--------------------HHHHHhhhHhhhHHHHHHHHHHHhH------------------
Q 047747 262 EAESL-NNDMLEGLAVN--------------------AELKQKLSIAGELEAELNHRLEDIS------------------ 302 (748)
Q Consensus 262 el~~~-~~~~~~ai~~~--------------------~~Lk~~~~~~gr~t~~~~l~L~~i~------------------ 302 (748)
+++.+ +++|..||+++ .||+... .||+| |+|++.+.
T Consensus 61 dli~v~~~~ye~Ave~aLG~~l~~iVV~~~~~a~~~i~~Lk~~~--~Gr~t---flpl~~i~~~~~~~~~~~~~g~~~l~ 135 (233)
T 2wd5_A 61 DLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQR--GEPET---FLPLDYLEVKPTDEKLRELKGAKLVI 135 (233)
T ss_dssp HHEEESSGGGHHHHHHHHGGGGSCEEESCHHHHHHHHHHHHHTT--CCCEE---EEETTTCCCCCCCGGGGGCSSCEESG
T ss_pred HhceeCcHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcC--CCCeE---EEECcccccCCcchhccCCCCchHHH
Confidence 88887 58999998774 6888877 89999 99877641
Q ss_pred -------h---------hhhhhhHH-HHHHHHHhH---hhHHHHHHHHhhHHhHHHHHHH-hhH
Q 047747 303 -------R---------DKDNLIME-KETVLRRVE---EGEKIAEDLRNSADQLNEEKLV-LGK 345 (748)
Q Consensus 303 -------~---------l~~~lv~e-l~~a~~~~~---~~~~~Vt~L~~l~g~l~~~~g~-~~~ 345 (748)
+ ||++++|+ ++.|..... .++++|| ++|+++.++|. +|+
T Consensus 136 dlV~~~~~~~~~~~~~~Lg~~~vv~dl~~A~~l~~~~~~~~r~VT----ldG~~~~~~G~~tGG 195 (233)
T 2wd5_A 136 DVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVA----LDGTLFQKSGVISGG 195 (233)
T ss_dssp GGEEESSGGGHHHHHHHTTTCEEESSHHHHHHHHHSSSSCCCEEE----TTCCEECTTSCEEEC
T ss_pred HhhhCCcHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEEe----cCCEEEeCCeeEeCC
Confidence 0 78888998 999965553 2578999 99999999887 765
No 11
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=96.88 E-value=1.9e-06 Score=79.03 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=53.1
Q ss_pred HHHHhH-HHHHhhhhhH-----------------HHHHHhhhHhhhHHHHHHHHHHHhH-----------------h---
Q 047747 262 EAESLN-NDMLEGLAVN-----------------AELKQKLSIAGELEAELNHRLEDIS-----------------R--- 303 (748)
Q Consensus 262 el~~~~-~~~~~ai~~~-----------------~~Lk~~~~~~gr~t~~~~l~L~~i~-----------------~--- 303 (748)
+|+.++ ++|..||+++ ..++.. ...||+| |+||+.|+ +
T Consensus 23 dLi~v~d~~y~~Ave~alG~~l~~iVVd~~~~A~~~i~~~-~~~GR~t---flpL~~i~~~~~~~~~~~~~~~~~~~~~~ 98 (161)
T 3l51_A 23 SLINVKDNSTATALEVVAGERLYNVVVDTEVTAKKLLEKG-ELKRRYT---IIPLNKISARCIAPETLRVAQNLVGPDNV 98 (161)
T ss_dssp GSCEESCGGGHHHHHHHHGGGGGCEEESCHHHHHHHHHHS-CCSSCEE---EEETTTCCCCCCCHHHHHHHHHHHCTTSE
T ss_pred HheeeCchhHHHHHHHHhccccceEEECCHHHHHHHHHHH-hhCCcEE---EEECccccccCcCHHHHhhhhhcCCCcch
Confidence 677885 7899999884 223221 1279999 99987532 1
Q ss_pred --------------------hhhhhhHH-HHHHHHHhHh---hHHHHHHHHhhHHhHHHHHHH-hh
Q 047747 304 --------------------DKDNLIME-KETVLRRVEE---GEKIAEDLRNSADQLNEEKLV-LG 344 (748)
Q Consensus 304 --------------------l~~~lv~e-l~~a~~~~~~---~~~~Vt~L~~l~g~l~~~~g~-~~ 344 (748)
||+|+||+ ++.|...... ++++|| ++|++++++|+ +|
T Consensus 99 ~~a~dlv~~d~~~~~a~~~llg~tlv~~dl~~A~~~~~~~~~~~r~VT----ldGd~i~~~G~~tG 160 (161)
T 3l51_A 99 HVALSLVDYKPELQKGMEFVFGTTFVCNNMDNAKKVAFDKRIMTRTVT----LGGDVFDPHGTLSG 160 (161)
T ss_dssp EEGGGGEECCGGGHHHHHHHHTTCEEESSHHHHHHHHHCTTTCCCEEE----TTSCEECCC-----
T ss_pred hHHHHHhcCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCCeEEe----CCCeEEcCCEEEec
Confidence 99999999 9999655532 578999 99999998877 65
No 12
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.77 E-value=0.27 Score=43.63 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 451 GLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLE 495 (748)
Q Consensus 451 ~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~ 495 (748)
.++..+..+..++..+...+.........|...+..++.....++
T Consensus 94 elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 94 DLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444444444444444444555555555555555555555
No 13
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.62 E-value=0.16 Score=43.85 Aligned_cols=104 Identities=18% Similarity=0.238 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 047747 128 KTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKL 207 (748)
Q Consensus 128 ~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l 207 (748)
..+..++..+.........+......+..++..+..+++.....+.+.+.....+......+...+..+...+.+.....
T Consensus 20 eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~ 99 (129)
T 2fxo_A 20 EEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMN 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777777777777777777777777777777777777777777666666666666666666665555555
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 047747 208 DAAGKIEAELNREVSDMKRQLTAR 231 (748)
Q Consensus 208 ~~~~~~~~~l~~~l~~l~~~l~~l 231 (748)
..+......++..+..++..+..+
T Consensus 100 ~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 100 AELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554443
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.62 E-value=0.7 Score=60.68 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 047747 620 KILEEIESLTARIKSLELEVASLGNQKSDLEEQMRLKIEEGFH 662 (748)
Q Consensus 620 ~~~~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~ 662 (748)
.++.+++....++.....-+..|+.|.....+.+..+..++..
T Consensus 2060 ~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A 2060 QIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMST 2102 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHh
Confidence 3333444444444444444555555555555555444444433
No 15
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=96.53 E-value=3.2e-05 Score=74.82 Aligned_cols=75 Identities=13% Similarity=0.089 Sum_probs=57.4
Q ss_pred HHHHhHHHHHhhhhhH--------------------HHHHHh-hhHhhhHHHHHHHHHHHhHh-----------------
Q 047747 262 EAESLNNDMLEGLAVN--------------------AELKQK-LSIAGELEAELNHRLEDISR----------------- 303 (748)
Q Consensus 262 el~~~~~~~~~ai~~~--------------------~~Lk~~-~~~~gr~t~~~~l~L~~i~~----------------- 303 (748)
+++.|+++|..||+++ .||+.. . .||+| |+|++.+.+
T Consensus 55 dli~v~~~~e~Ave~aLG~~l~~iVV~~~~~a~~~i~~l~~~~~--~gr~t---flpl~~~~~~~~~~~~~~~~~~l~~~ 129 (213)
T 2wd5_B 55 NNFECEPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNL--PGEVT---FLPLNKLDVRDTAYPETNDAIPMISK 129 (213)
T ss_dssp GSEECCGGGHHHHHHHHTTGGGCEEESCHHHHHHHHHHHHHTTC--CCCEE---EEETTTCCCCCCCCCCCSSEEEGGGG
T ss_pred HhcccCHHHHHHHHHHHhHHhhEEEECCHHHHHHHHHHHHhCCC--CcceE---EEECcccCcccCCCCCCCCceeHHHH
Confidence 7888888999999774 566654 2 68888 888775320
Q ss_pred --------------hhhhhhHH-HHHHHHHhHh-hHHHHHHHHhhHHhHHHHHHH-hhH
Q 047747 304 --------------DKDNLIME-KETVLRRVEE-GEKIAEDLRNSADQLNEEKLV-LGK 345 (748)
Q Consensus 304 --------------l~~~lv~e-l~~a~~~~~~-~~~~Vt~L~~l~g~l~~~~g~-~~~ 345 (748)
||++++|+ ++.|...... ++++|| ++|+++.++|. +|+
T Consensus 130 v~~~~~~~~~~~~~l~~~~vv~~l~~A~~l~~~~~~~~VT----ldG~~~~~~G~~tgG 184 (213)
T 2wd5_B 130 LRYNPRFDKAFKHVFGKTLICRSMEVSTQLARAFTMDCIT----LEGDQVSHRGALTGG 184 (213)
T ss_dssp CEECGGGHHHHHHHHTTEEEESSHHHHHHHHHHSSCEEEC----TTCCEECTTSCEEEC
T ss_pred ccCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCceEEe----CCCcEECCCeEEECC
Confidence 78888998 9999655533 678999 99999999887 653
No 16
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.46 E-value=0.42 Score=42.10 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 357 MEQQLESSKQEVSDLSQNLTATEEENKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVE 419 (748)
Q Consensus 357 le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~ 419 (748)
++..+..++..+......+..+...+..+...+..+...-......-..+..++..+..++..
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKE 88 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKE 88 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555444444444443333444444444444444444433
No 17
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.21 E-value=0.59 Score=41.19 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 047747 598 SEYIIEVQILKEEIVNKT 615 (748)
Q Consensus 598 ~~~~~~l~~l~~~l~~~~ 615 (748)
..+..+|..+...+....
T Consensus 73 d~yEeqIk~L~~kLKEAE 90 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAE 90 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 18
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Probab=96.05 E-value=3.1e-05 Score=73.12 Aligned_cols=75 Identities=20% Similarity=0.204 Sum_probs=59.6
Q ss_pred HHHHhHHHHHhhhhhH--------------------HHHHHhhhHhhhHHHHHHHHHHHhH------------h------
Q 047747 262 EAESLNNDMLEGLAVN--------------------AELKQKLSIAGELEAELNHRLEDIS------------R------ 303 (748)
Q Consensus 262 el~~~~~~~~~ai~~~--------------------~~Lk~~~~~~gr~t~~~~l~L~~i~------------~------ 303 (748)
+++.++++|..||+++ .||+... .||+| |+|++.+. +
T Consensus 38 ~li~v~~~~e~Ave~aLG~~l~~ivv~~~~~a~~~i~~lk~~~--~gr~t---flpl~~~~~~~~~~~~~~~~~g~~~~~ 112 (186)
T 1gxj_A 38 NLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNE--AGRVT---ILPLDLIDGSFNRISGLENERGFVGYA 112 (186)
T ss_dssp HHCBCCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHT--CCCEE---EEETTTCCCCCCCCTTGGGSTTEEEEH
T ss_pred heeccCHHHHHHHHHHHHHhhhEEEECCHHHHHHHHHHHHhcC--CCceE---EEEccccCCCcccchhcccCCCchHHH
Confidence 8888888999998774 6888887 89999 98876521 0
Q ss_pred -----------------hhhhhhHH-HHHHHHHhH---hhHHHHHHHHhhHHhHHHHHHH-hhH
Q 047747 304 -----------------DKDNLIME-KETVLRRVE---EGEKIAEDLRNSADQLNEEKLV-LGK 345 (748)
Q Consensus 304 -----------------l~~~lv~e-l~~a~~~~~---~~~~~Vt~L~~l~g~l~~~~g~-~~~ 345 (748)
||++++|+ ++.|..... .++++|| ++|+++.++|. +|+
T Consensus 113 ~dlv~~~~~~~~~~~~~lg~~~v~~~l~~A~~l~~~~~~~~~~VT----ldG~~~~~~G~~~gG 172 (186)
T 1gxj_A 113 VDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIAT----LDGELISGRGAITGG 172 (186)
T ss_dssp HHHCBCCGGGHHHHHHHHTTCEEESCHHHHHHHHHHHTCCSCEEE----TTSCEECTTSCEEEE
T ss_pred HHHccCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCceEEe----CCCeEEcCCEEEECC
Confidence 78888998 999965552 3678999 99999999887 654
No 19
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=95.99 E-value=4e-05 Score=74.15 Aligned_cols=75 Identities=20% Similarity=0.204 Sum_probs=57.8
Q ss_pred HHHHhHHHHHhhhhhH--------------------HHHHHhhhHhhhHHHHHHHHHHHhH------------h------
Q 047747 262 EAESLNNDMLEGLAVN--------------------AELKQKLSIAGELEAELNHRLEDIS------------R------ 303 (748)
Q Consensus 262 el~~~~~~~~~ai~~~--------------------~~Lk~~~~~~gr~t~~~~l~L~~i~------------~------ 303 (748)
+++.|+++|..||+++ .||+... .||+| |+|++.+. +
T Consensus 50 ~li~v~~~~e~Ave~aLg~~l~~ivv~~~~~a~~~i~~lk~~~--~gr~~---~lpl~~~~~~~~~~~~~~~~~g~~~~~ 124 (213)
T 1gxl_A 50 NLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNE--AGRVT---ILPLDLIDGSFNRISGLENERGFVGYA 124 (213)
T ss_dssp GTCBCCHHHHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHT--CEEEE---EEETTTSCCCCCCCTTGGGSTTEEEEG
T ss_pred heeeeCHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcC--CCceE---EEEchhcCCCCccchhhhcCCCcHHHH
Confidence 7778888899988774 6888877 89998 88876521 0
Q ss_pred -----------------hhhhhhHH-HHHHHHHhH---hhHHHHHHHHhhHHhHHHHHHH-hhH
Q 047747 304 -----------------DKDNLIME-KETVLRRVE---EGEKIAEDLRNSADQLNEEKLV-LGK 345 (748)
Q Consensus 304 -----------------l~~~lv~e-l~~a~~~~~---~~~~~Vt~L~~l~g~l~~~~g~-~~~ 345 (748)
||++++|+ ++.|..... ++.++|| ++|+++.++|+ +|+
T Consensus 125 ~d~v~~~~~~~~~~~~~lg~~~vv~~l~~A~~~~~~~~~~~~~VT----~~G~~~~~~G~~~gg 184 (213)
T 1gxl_A 125 VDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIAT----LDGELISGRGAITGG 184 (213)
T ss_dssp GGGCBCCSTTHHHHHHHSSSEEEESSHHHHHHHHHHTCSSCEEEC----TTSCEECTTSCEEEC
T ss_pred HHHhcCCHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEEe----cCCeEEcCCceEECC
Confidence 77888888 999865542 3578999 99999999887 654
No 20
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.63 E-value=0.63 Score=38.05 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q 047747 146 ELKRRMTATSEEKEALNLEYQSALSRIQE-------AGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELN 218 (748)
Q Consensus 146 ~l~~~l~~l~~eke~l~~~~~~~~~~~~~-------le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~ 218 (748)
.++.++..+..+++.....+......+.. .+.++..++.++..++..++.....+......++...+.....+
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE 85 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333333 33333333333333333333333344444444444444444444
Q ss_pred HHHHHHHHHH
Q 047747 219 REVSDMKRQL 228 (748)
Q Consensus 219 ~~l~~l~~~l 228 (748)
.++..+...+
T Consensus 86 ~ev~~L~Rri 95 (101)
T 3u1c_A 86 SEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 21
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.44 E-value=0.86 Score=37.23 Aligned_cols=33 Identities=21% Similarity=0.019 Sum_probs=12.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 047747 188 SLNTEKLKLTVENAELNQKLDAAGKIEAELNRE 220 (748)
Q Consensus 188 ~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~ 220 (748)
.....+......+.........+...+..+.+.
T Consensus 62 ~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rr 94 (101)
T 3u1c_A 62 QVLEELHKSEDSLLFAEENAAKAESEVASLNRR 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 22
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.28 E-value=1.3 Score=38.15 Aligned_cols=16 Identities=31% Similarity=0.154 Sum_probs=5.7
Q ss_pred hhhHHHHHHhhhhhHH
Q 047747 660 GFHLTEEKLGLLDGIF 675 (748)
Q Consensus 660 ~~~l~~~~~~l~~~i~ 675 (748)
...|......+...+.
T Consensus 99 ~~~L~~~kkkle~e~~ 114 (129)
T 2fxo_A 99 NAELTAKKRKLEDECS 114 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 23
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.95 E-value=1.1 Score=36.67 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047747 146 ELKRRMTATSEEKEALNLEYQSA 168 (748)
Q Consensus 146 ~l~~~l~~l~~eke~l~~~~~~~ 168 (748)
.++.++..+..+++.....+...
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~ 28 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQA 28 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333
No 24
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.35 E-value=1.8 Score=35.40 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 047747 170 SRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTA 230 (748)
Q Consensus 170 ~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~ 230 (748)
......+.++..++..+..++..++.....+......++...+.....+.++..|+..+..
T Consensus 37 ~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriql 97 (101)
T 3u59_A 37 DRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555555555555555555555555555555555555443
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.28 E-value=1.4 Score=52.53 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=3.4
Q ss_pred hhhHHHhhh
Q 047747 78 DNLRGELKK 86 (748)
Q Consensus 78 ~~~~~~~~~ 86 (748)
+-+...+..
T Consensus 413 ~wlV~~iN~ 421 (1080)
T 2dfs_A 413 NWIVDHVNK 421 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 26
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.61 E-value=2.9 Score=35.25 Aligned_cols=69 Identities=13% Similarity=0.256 Sum_probs=47.6
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 122 LESEYQKTTDGMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLN 190 (748)
Q Consensus 122 ~~~~~~~~~~~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~ 190 (748)
+.+.|...+..|+..+..+..+-..+.-.+..++...+.++..|+.....-..++.++..++..+....
T Consensus 14 ~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~ 82 (119)
T 3ol1_A 14 LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNAS 82 (119)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHH
Confidence 335678888888888888888888888888888888888887777655555555555554444444333
No 27
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.53 E-value=1.7 Score=51.75 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhccCc
Q 047747 32 EIEDKFKKILKLVQDKD 48 (748)
Q Consensus 32 ~~~~~~~~~~~~~~~~~ 48 (748)
-++.+ ..||.||+|+-
T Consensus 498 lie~~-~Gil~lLdee~ 513 (1080)
T 2dfs_A 498 LIEAK-MGVLDLLDEEC 513 (1080)
T ss_dssp HHHST-TSHHHHHHHHT
T ss_pred HHhcC-Cceeeeccccc
Confidence 34444 56777776653
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=92.87 E-value=3.2 Score=34.95 Aligned_cols=6 Identities=33% Similarity=0.501 Sum_probs=2.3
Q ss_pred HHHHHH
Q 047747 706 ITAMAA 711 (748)
Q Consensus 706 ~~~l~~ 711 (748)
+..++.
T Consensus 110 l~eLq~ 115 (119)
T 3ol1_A 110 IQELQA 115 (119)
T ss_dssp HHHHHS
T ss_pred HHHHHH
Confidence 333433
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.72 E-value=1.7 Score=48.44 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=11.7
Q ss_pred HhhhhHHHHHHhhhhhHHHHHHHHHHHHHHhHH
Q 047747 658 EEGFHLTEEKLGLLDGIFELEKTLTERGSELSS 690 (748)
Q Consensus 658 ~e~~~l~~~~~~l~~~i~~le~~~~~~~~~l~~ 690 (748)
.+...+...++.....+.++..++.....++..
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 30
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=91.69 E-value=3.8 Score=31.82 Aligned_cols=32 Identities=22% Similarity=0.157 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 147 LKRRMTATSEEKEALNLEYQSALSRIQEAGEL 178 (748)
Q Consensus 147 l~~~l~~l~~eke~l~~~~~~~~~~~~~le~e 178 (748)
++.++..+..+++.....+......+...+..
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~ 35 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEER 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333333333
No 31
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.64 E-value=3.7 Score=35.20 Aligned_cols=12 Identities=50% Similarity=0.531 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 047747 403 IQDLMAESSQLK 414 (748)
Q Consensus 403 i~~l~~~~~~l~ 414 (748)
++.+..+++.+.
T Consensus 45 iq~L~~el~~l~ 56 (129)
T 3tnu_B 45 IQRLRAEIDNVK 56 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 32
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=90.06 E-value=4.3 Score=31.86 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 047747 623 EEIESLTARIKSLELEVASLGNQKSDLEEQMRLK 656 (748)
Q Consensus 623 ~~~~~l~~~~~~l~~~l~~l~~e~~~l~~~~~~l 656 (748)
.++..+...++.+.-...+|..++..+.+.+.|+
T Consensus 49 ~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 49 NTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443
No 33
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=89.90 E-value=6 Score=31.06 Aligned_cols=56 Identities=13% Similarity=0.249 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 132 GMKQELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAE 187 (748)
Q Consensus 132 ~lk~~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~ 187 (748)
.|+.++..+..+-..+.-.+..+....+.++..|+.....-...+.++..++..+.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD 59 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44444444444444444444444444444444444444444444444443333333
No 34
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.45 E-value=6.9 Score=31.13 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 152 TATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAES 188 (748)
Q Consensus 152 ~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~ 188 (748)
.....++..+...+......-...+.....+..++..
T Consensus 22 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEe 58 (97)
T 2eqb_B 22 SDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVED 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334433333333333344443333333333
No 35
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.49 E-value=7 Score=29.96 Aligned_cols=65 Identities=25% Similarity=0.247 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 174 EAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEAL 238 (748)
Q Consensus 174 ~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~ 238 (748)
.++..|..+-..+.-+..++.+++.+...+......+......+..+...++.+....+..++.+
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444433
No 36
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.19 E-value=9.7 Score=31.26 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047747 146 ELKRRMTATSEEKEALNLEYQ 166 (748)
Q Consensus 146 ~l~~~l~~l~~eke~l~~~~~ 166 (748)
.|+.+...+..+.+.++..|.
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~ 27 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLE 27 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 37
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.25 E-value=8.8 Score=29.71 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047747 220 EVSDMKRQLTARSEEKEALNLE 241 (748)
Q Consensus 220 ~l~~l~~~l~~l~~e~~~~~~~ 241 (748)
++..++..+..++.+++.....
T Consensus 42 ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 42 ELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 38
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.27 E-value=16 Score=31.60 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 047747 137 LDAATLEVSELKRR--MTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIE 214 (748)
Q Consensus 137 l~~~~~ei~~l~~~--l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~ 214 (748)
..-....+..+... ...+..++-.+...++-.. .+-.+......+...+..+..++..+..++.....+++.+.+.+
T Consensus 34 A~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiad-El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~ 112 (138)
T 3hnw_A 34 ASYINNKITEFNKEESYRRMSAELRTDMMYLNIAD-DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEI 112 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555532 4444444444444443222 22233334444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047747 215 AELNREVSDMKRQLTARSE 233 (748)
Q Consensus 215 ~~l~~~l~~l~~~l~~l~~ 233 (748)
..+..++..++..+..++.
T Consensus 113 ~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 113 KELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 39
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=85.68 E-value=12 Score=29.93 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 214 EAELNREVSDMKRQLTARSEEKEALNLEY 242 (748)
Q Consensus 214 ~~~l~~~l~~l~~~l~~l~~e~~~~~~~l 242 (748)
-...+..+..+...+.....++..+..++
T Consensus 55 E~~~w~eyn~~~~ql~e~~dE~~Sl~~q~ 83 (96)
T 3q8t_A 55 EAQYQREYSEFKRQQLELDDELKSVENQM 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444443
No 40
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=85.17 E-value=11 Score=30.53 Aligned_cols=40 Identities=10% Similarity=-0.052 Sum_probs=25.6
Q ss_pred HHHHhHHHHHHHhhhh---hhhhHHHHHHHHhhcchHhhhccC
Q 047747 684 RGSELSSLQEKHINVE---NKASAQITAMAAQASLPQISRNGA 723 (748)
Q Consensus 684 ~~~~l~~l~~~l~~~~---~~a~~~~~~l~~~i~~Lk~~l~~l 723 (748)
++...+-+...|.... ..+.+....|..++..|++++..+
T Consensus 67 LkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 67 LKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 3555555555555441 345667778888888888877654
No 41
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=85.12 E-value=13 Score=29.76 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=20.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 202 ELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEYQ 243 (748)
Q Consensus 202 ~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l~ 243 (748)
.+...-...+.........+..+...+..+...+.-....+.
T Consensus 50 ~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd 91 (96)
T 3q8t_A 50 RLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455555555555555555555555555544443
No 42
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=84.59 E-value=15 Score=30.08 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhHHHH
Q 047747 520 LSRIENLTAQINDLLADLDSLHNE 543 (748)
Q Consensus 520 ~~~i~~l~~~i~~l~~el~~l~~~ 543 (748)
...+..+......+..++..+..+
T Consensus 76 q~qL~~Lt~~Re~V~~eL~rLQ~e 99 (112)
T 1x79_B 76 QEQMAVLMQSREQVSEELVRLQKD 99 (112)
T ss_dssp HHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444434343444443333
No 43
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=84.38 E-value=16 Score=30.02 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Q 047747 521 SRIENLTAQINDLLADLDSLHNEKSKLEEH 550 (748)
Q Consensus 521 ~~i~~l~~~i~~l~~el~~l~~~~~~l~~~ 550 (748)
..+..++.++..+......+...+..++..
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~ 64 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQA 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444333
No 44
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.49 E-value=22 Score=31.05 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=9.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Q 047747 580 RGQKAVLEVQLEEKTREISEYIIEV 604 (748)
Q Consensus 580 ~~~~~~l~~~l~~~~~~~~~~~~~l 604 (748)
..+...+..++.....-+..++.++
T Consensus 114 e~r~~~L~~ql~e~~~~l~~lq~ql 138 (154)
T 2ocy_A 114 EILNKRLTEQLREKDTLLDTLTLQL 138 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 45
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=83.10 E-value=22 Score=30.84 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=32.5
Q ss_pred HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 047747 448 QVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDLEMLTKERGDELTTT 508 (748)
Q Consensus 448 el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l 508 (748)
.+..|+.++..+..++..+...+......+..++.++..++.++..++..+..++.+-..+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555555555555555555444433333
No 46
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.88 E-value=8.7 Score=32.66 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=12.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 207 LDAAGKIEAELNREVSDMKRQLTARSEEKEALNLEY 242 (748)
Q Consensus 207 l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~~~~l 242 (748)
+.........++.....+...+.....-+..++.++
T Consensus 91 Va~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL 126 (135)
T 2e7s_A 91 VADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQL 126 (135)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444344333333
No 47
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=80.71 E-value=19 Score=28.37 Aligned_cols=12 Identities=8% Similarity=0.335 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 047747 142 LEVSELKRRMTA 153 (748)
Q Consensus 142 ~ei~~l~~~l~~ 153 (748)
.++..++..+..
T Consensus 21 eel~~lke~l~k 32 (89)
T 3bas_A 21 KQMDKMKEDLAK 32 (89)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 48
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=80.71 E-value=28 Score=37.17 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHhHhhHHHHH
Q 047747 478 KQLEEENLQLQARISDLEMLTKERGDELTTTIMKLEANESESLSRIENLTAQINDLLADLDSLHNEK 544 (748)
Q Consensus 478 ~~l~~~~~~l~~~l~~l~~~l~~~~~el~~l~~~l~~~~~~~~~~i~~l~~~i~~l~~el~~l~~~~ 544 (748)
..++.++.+++..+..++.+-..+....-.+...++...+.-..++.+++.+|..+..+++.++.++
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555544444444444444444333333344444444444444444444443
No 49
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=80.45 E-value=13 Score=31.18 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047747 144 VSELKRRMTATSEEKEALN 162 (748)
Q Consensus 144 i~~l~~~l~~l~~eke~l~ 162 (748)
|..|+..+..+..+.+.+.
T Consensus 17 Ie~Lkreie~lk~ele~l~ 35 (120)
T 3i00_A 17 IERLYREISGLKAQLENMK 35 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 50
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=78.57 E-value=16 Score=29.28 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 396 FQQAQNLIQDLMAESSQLKEKMVEKEREV 424 (748)
Q Consensus 396 i~~l~~~i~~l~~~~~~l~~~l~~le~e~ 424 (748)
.+++.++-..+.-++.-|+..+...+..+
T Consensus 18 nAQLDNEKsal~YqVdlLKD~LEe~eE~~ 46 (103)
T 4h22_A 18 NAQLDNEKTNFMYQVDTLKDMLLELEEQL 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555554444443333
No 51
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=72.99 E-value=43 Score=28.51 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHhhhhHHHHHH
Q 047747 618 QQKILEEIESLTARIKSLELEVASLGN---QKSDLEEQMRLKIEEGFHLTEEKL 668 (748)
Q Consensus 618 ~~~~~~~~~~l~~~~~~l~~~l~~l~~---e~~~l~~~~~~le~e~~~l~~~~~ 668 (748)
+......+..+..++..++.++..|.+ +|..+...++.+..+...++....
T Consensus 71 ~~sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~ 124 (158)
T 3tul_A 71 TDTAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALD 124 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666667777777777765 677777666666666555555443
No 52
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=72.64 E-value=84 Score=31.65 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=8.5
Q ss_pred HHHHHHhHhhHHHHHHHHHHHh
Q 047747 530 INDLLADLDSLHNEKSKLEEHM 551 (748)
Q Consensus 530 i~~l~~el~~l~~~~~~l~~~l 551 (748)
|..|+..+..+..+++.|+..|
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444443333
No 53
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=70.68 E-value=44 Score=27.65 Aligned_cols=42 Identities=17% Similarity=0.323 Sum_probs=24.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 047747 347 LETLRGKISNMEQQLESSKQEVSDLSQNLTATEEENKSLTLK 388 (748)
Q Consensus 347 i~~l~~~l~~le~~l~~~~~~l~~l~~~l~~~~~~l~~l~~~ 388 (748)
+..|...+.++..+++..+.++.-.-.-+..-+..++.+..+
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKR 54 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKR 54 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 445556666666666666666665555555555555554443
No 54
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=68.86 E-value=45 Score=27.01 Aligned_cols=25 Identities=8% Similarity=0.275 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHH
Q 047747 525 NLTAQINDLLADLDSLHNEKSKLEE 549 (748)
Q Consensus 525 ~l~~~i~~l~~el~~l~~~~~~l~~ 549 (748)
.+...+..+...++.+...+..+..
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~ 93 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 55
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=67.97 E-value=50 Score=27.22 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHh
Q 047747 525 NLTAQINDLLADLDSLHNEKSKLEEHM 551 (748)
Q Consensus 525 ~l~~~i~~l~~el~~l~~~~~~l~~~l 551 (748)
.+...+..+...+..+...+..+..++
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l 100 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKL 100 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 56
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=65.68 E-value=47 Score=26.06 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 135 QELDAATLEVSELKRRMTATSEEKEALN 162 (748)
Q Consensus 135 ~~l~~~~~ei~~l~~~l~~l~~eke~l~ 162 (748)
..+...+.....+...+..+..++..+.
T Consensus 28 e~l~k~e~~rkele~~~~~l~~ek~~L~ 55 (89)
T 3bas_A 28 EDLAKTERIKKELEEQNVTLLEQKNDLF 55 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 57
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=63.81 E-value=44 Score=25.04 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047747 136 ELDAATLEVSELKRRMTATSEEKEALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKL 196 (748)
Q Consensus 136 ~l~~~~~ei~~l~~~l~~l~~eke~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l 196 (748)
++..+-.+-.+|....+.+.--++++...+..+......+..++..+..-...++..+.++
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445555554444444444444444444444444444333333
No 58
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=62.75 E-value=58 Score=26.09 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=5.2
Q ss_pred HHHHHhhHHHHHHH
Q 047747 576 LESLRGQKAVLEVQ 589 (748)
Q Consensus 576 ~~~l~~~~~~l~~~ 589 (748)
.+.+-+....+.-+
T Consensus 18 nAQLDNEKsal~Yq 31 (103)
T 4h22_A 18 NAQLDNEKTNFMYQ 31 (103)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHH
Confidence 33333333333333
No 59
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=59.16 E-value=1.6e+02 Score=31.18 Aligned_cols=22 Identities=5% Similarity=0.016 Sum_probs=9.9
Q ss_pred cccccccccCCCCCchhhhhhHHHH
Q 047747 9 SIKSFFGSYIDPEKDEQLKGNKIEI 33 (748)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (748)
.+.+||.+ +....+++.-+.+.
T Consensus 20 tltvW~~~---~~~~~~~~~~i~~F 41 (471)
T 3mq9_A 20 KLVIWING---DKGYNGLAEVGKKF 41 (471)
T ss_dssp SEEEECCT---TSCHHHHHHHHHHH
T ss_pred eEEEEeCC---CCccHHHHHHHHHH
Confidence 35666542 23334544444433
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.39 E-value=2.1e+02 Score=30.26 Aligned_cols=11 Identities=45% Similarity=0.498 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 047747 474 AAAAKQLEEEN 484 (748)
Q Consensus 474 ~~~~~~l~~~~ 484 (748)
..+++.++++.
T Consensus 441 ~~~~~~~~~~~ 451 (487)
T 3oja_A 441 QHKETQLAEEN 451 (487)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHh
Confidence 33333333333
No 61
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=49.47 E-value=1.4e+02 Score=26.49 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=7.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q 047747 574 QELESLRGQKAVLEVQLEEKT 594 (748)
Q Consensus 574 ~~~~~l~~~~~~l~~~l~~~~ 594 (748)
..+..+.+.......++....
T Consensus 31 ~~yd~l~e~y~r~sqEiq~Kr 51 (170)
T 3l4q_C 31 REYDQLYEEYTRTSQELQMKR 51 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHH
Confidence 333333333333333333333
No 62
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=48.88 E-value=1.1e+02 Score=25.00 Aligned_cols=28 Identities=32% Similarity=0.423 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 214 EAELNREVSDMKRQLTARSEEKEALNLE 241 (748)
Q Consensus 214 ~~~l~~~l~~l~~~l~~l~~e~~~~~~~ 241 (748)
+.+++.++..++..|.....+++.++..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334444444444444444444333
No 63
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=46.28 E-value=95 Score=23.57 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 130 TDGMKQELDAATLEVSELKRRMTAT 154 (748)
Q Consensus 130 ~~~lk~~l~~~~~ei~~l~~~l~~l 154 (748)
...+++.+.....++..|+..-..|
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL 37 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDL 37 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444445555555555444444433
No 64
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=46.18 E-value=1.3e+02 Score=25.07 Aligned_cols=18 Identities=6% Similarity=0.294 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047747 130 TDGMKQELDAATLEVSEL 147 (748)
Q Consensus 130 ~~~lk~~l~~~~~ei~~l 147 (748)
+..|+.++..+..+++.+
T Consensus 17 Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 17 IERLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444443333333
No 65
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.61 E-value=92 Score=24.93 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhh
Q 047747 522 RIENLTAQINDLLADLDSLHNEKSKLEEHMVF 553 (748)
Q Consensus 522 ~i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~ 553 (748)
.+..+...|+.+..+...+...+..|+.++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666677666666655
No 66
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=41.73 E-value=1.2e+02 Score=23.57 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=5.2
Q ss_pred hhhhHHHHHHHHHH
Q 047747 670 LLDGIFELEKTLTE 683 (748)
Q Consensus 670 l~~~i~~le~~~~~ 683 (748)
|-..+.-++..+++
T Consensus 88 Llsk~yh~ene~ar 101 (114)
T 2xzr_A 88 ILSKIYHIENEIAR 101 (114)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHH
Confidence 33333333333333
No 67
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=41.61 E-value=1.1e+02 Score=22.94 Aligned_cols=19 Identities=42% Similarity=0.337 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047747 144 VSELKRRMTATSEEKEALN 162 (748)
Q Consensus 144 i~~l~~~l~~l~~eke~l~ 162 (748)
++.|-.....+..-++.+.
T Consensus 11 vEnLi~EN~eLl~TKNaLn 29 (77)
T 2w83_C 11 VENLILENTQLLETKNALN 29 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 68
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=39.26 E-value=44 Score=36.62 Aligned_cols=8 Identities=13% Similarity=-0.251 Sum_probs=4.3
Q ss_pred Cchhhhhh
Q 047747 22 KDEQLKGN 29 (748)
Q Consensus 22 ~~~~~~~~ 29 (748)
...||.-+
T Consensus 55 ~~~WLd~~ 62 (575)
T 2i1j_A 55 DLTWIKLY 62 (575)
T ss_dssp CEEECCTT
T ss_pred chhHhhcc
Confidence 34577653
No 69
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=38.26 E-value=47 Score=36.38 Aligned_cols=93 Identities=13% Similarity=0.154 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 159 EALNLEYQSALSRIQEAGELIRNLKLEAESLNTEKLKLTVENAELNQKLDAAGKIEAELNREVSDMKRQLTARSEEKEAL 238 (748)
Q Consensus 159 e~l~~~~~~~~~~~~~le~ei~~l~~~~~~l~~~~~~l~~el~~l~~~l~~~~~~~~~l~~~l~~l~~~l~~l~~e~~~~ 238 (748)
+........+..++..++.+...++..+.........+..+.......-..+......++.....+...-.....+...+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l 410 (575)
T 2i1j_A 331 ERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKL 410 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33333344444555555555555555555555555555555555544444555555555555555555444444444444
Q ss_pred HHHHHHHHHHHHH
Q 047747 239 NLEYQTALSKIQE 251 (748)
Q Consensus 239 ~~~l~e~~~~~~~ 251 (748)
..++.++...+..
T Consensus 411 ~~~~~~~~~~~~~ 423 (575)
T 2i1j_A 411 EDEIRAKQEEVSR 423 (575)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
No 70
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=35.93 E-value=1.4e+02 Score=22.63 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 142 LEVSELKRRMTATSEEKEALNLEYQ 166 (748)
Q Consensus 142 ~ei~~l~~~l~~l~~eke~l~~~~~ 166 (748)
.++..|+-++..+..|+-.....+.
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLK 50 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLK 50 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555554444444443333
No 71
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=35.69 E-value=2.4e+02 Score=25.28 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=12.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 580 RGQKAVLEVQLEEKTREISEYIIEVQILKEEI 611 (748)
Q Consensus 580 ~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~l 611 (748)
..+...+..++.....++..++.++..++...
T Consensus 26 ~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 26 VNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333333333333444444444433333
No 72
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=35.35 E-value=1.5e+02 Score=22.79 Aligned_cols=15 Identities=13% Similarity=0.089 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q 047747 397 QQAQNLIQDLMAESS 411 (748)
Q Consensus 397 ~~l~~~i~~l~~~~~ 411 (748)
..+...++.+..++.
T Consensus 37 ~~LRGqiE~~~~~l~ 51 (83)
T 2xdj_A 37 DSLRGQIQENQYQLN 51 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHH
Confidence 333333333333333
No 73
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=34.78 E-value=56 Score=22.78 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 047747 343 LGKELETLRGKISNMEQQLESSKQEVSDLSQNL 375 (748)
Q Consensus 343 ~~~ei~~l~~~l~~le~~l~~~~~~l~~l~~~l 375 (748)
++..+..|..++..|+.++..+..++..+...+
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777777776666666655544
No 74
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=34.53 E-value=2.5e+02 Score=24.95 Aligned_cols=45 Identities=9% Similarity=0.277 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 450 TGLELELESLQAHNRDMVVQIDSKAAAAKQLEEENLQLQARISDL 494 (748)
Q Consensus 450 ~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~~~l~~~l~~l 494 (748)
+.|...+..+......|...+.........+...++.+.-.+..+
T Consensus 99 e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL 143 (170)
T 3l4q_C 99 ERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQL 143 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 334444444444444444444444443344444444444444333
No 75
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=32.17 E-value=83 Score=24.74 Aligned_cols=17 Identities=6% Similarity=0.020 Sum_probs=8.9
Q ss_pred HHHHhhcchHhhhccCC
Q 047747 708 AMAAQASLPQISRNGAG 724 (748)
Q Consensus 708 ~l~~~i~~Lk~~l~~lG 724 (748)
.+...|..|+.+|...|
T Consensus 72 ~YEeEI~rLr~eLe~r~ 88 (92)
T 3vp9_A 72 AYEEEIKHLKLGLEQRD 88 (92)
T ss_dssp HHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 45556666666665544
No 76
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=31.12 E-value=2.1e+02 Score=25.76 Aligned_cols=36 Identities=28% Similarity=0.204 Sum_probs=14.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhhhhhH
Q 047747 639 VASLGNQKSDLEEQMRLKIEEGFHLTEEKLGLLDGI 674 (748)
Q Consensus 639 l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l~~~i 674 (748)
+..|..+...+..++.....++..|+.++..+....
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333333444444444444444444433333333
No 77
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=30.99 E-value=4.9e+02 Score=27.32 Aligned_cols=9 Identities=11% Similarity=0.250 Sum_probs=3.3
Q ss_pred HHHHhHhhH
Q 047747 532 DLLADLDSL 540 (748)
Q Consensus 532 ~l~~el~~l 540 (748)
..+.++..+
T Consensus 13 ~yq~elarv 21 (497)
T 3iox_A 13 AYQTELARV 21 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 78
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=30.47 E-value=1.1e+02 Score=19.85 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=10.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhh
Q 047747 636 ELEVASLGNQKSDLEEQMRLKIEEG 660 (748)
Q Consensus 636 ~~~l~~l~~e~~~l~~~~~~le~e~ 660 (748)
+....++.....+|++++..+..+.
T Consensus 9 E~r~k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 9 ENRVKDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333333333444444444444333
No 79
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=30.04 E-value=3.5e+02 Score=25.34 Aligned_cols=16 Identities=6% Similarity=0.314 Sum_probs=6.4
Q ss_pred HhhhhHHHHHHHHHHH
Q 047747 641 SLGNQKSDLEEQMRLK 656 (748)
Q Consensus 641 ~l~~e~~~l~~~~~~l 656 (748)
.|..++..++.++.++
T Consensus 209 ~LE~eL~~V~~Rief~ 224 (242)
T 3uux_B 209 LLEDNLKQIDDRLDFL 224 (242)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444433
No 80
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.79 E-value=2.2e+02 Score=22.03 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=10.6
Q ss_pred HHHHHHhHhhHHHHHHHHHHHhh
Q 047747 530 INDLLADLDSLHNEKSKLEEHMV 552 (748)
Q Consensus 530 i~~l~~el~~l~~~~~~l~~~l~ 552 (748)
+..+...|..++.++..+...|.
T Consensus 24 le~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444544443
No 81
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=26.30 E-value=2.6e+02 Score=22.65 Aligned_cols=97 Identities=21% Similarity=0.265 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 047747 518 ESLSRIENLTAQINDLLADLDSLHNEKSKLEEHMVFKDDEASTQVKGLMNQVDTLQQELESLRGQKAVLEVQLEEKTREI 597 (748)
Q Consensus 518 ~~~~~i~~l~~~i~~l~~el~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~l~~~~~~~ 597 (748)
.+-....+....+.........+...+..|..++..+..........-...+..++.++..-...+..+...+......-
T Consensus 5 ~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~ 84 (107)
T 2no2_A 5 DLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSE 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhH
Q 047747 598 SEYIIEVQILKEEIVNK 614 (748)
Q Consensus 598 ~~~~~~l~~l~~~l~~~ 614 (748)
..+...+..+..+...+
T Consensus 85 ~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 85 ANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 82
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.60 E-value=1.3e+02 Score=18.91 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 137 LDAATLEVSELKRRMTATSEEKEALNL 163 (748)
Q Consensus 137 l~~~~~ei~~l~~~l~~l~~eke~l~~ 163 (748)
+.....+|..++.++..++.++-.+..
T Consensus 10 LeEtkeQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 10 LEETKEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666665543
No 83
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.29 E-value=1.9e+02 Score=20.37 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047747 440 AQIKELQAQVTGLELELESLQAHNRDMVVQIDSKAAAAKQLEEEN 484 (748)
Q Consensus 440 ~~~~~~e~el~~l~~~~~~l~~~l~~l~~~l~~~~~~~~~l~~~~ 484 (748)
+++.+++..+..-+..+.++-.--..+.+++.-++..+..++.+.
T Consensus 13 qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 13 QEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhh
Confidence 455556666666666666555555555555555555555544443
No 84
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=23.76 E-value=3.4e+02 Score=28.68 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047747 402 LIQDLMAESSQLKEKMVEKEREV 424 (748)
Q Consensus 402 ~i~~l~~~~~~l~~~l~~le~e~ 424 (748)
+...+..+++.++.+...+.+++
T Consensus 41 ~~r~~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 41 EWVKLRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444333333
No 85
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=23.06 E-value=2.2e+02 Score=20.66 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 047747 585 VLEVQLEEKTREISEYIIEVQILKEEIVNK 614 (748)
Q Consensus 585 ~l~~~l~~~~~~~~~~~~~l~~l~~~l~~~ 614 (748)
.+...+...+.++.++..-+..+...+..|
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKY 36 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKY 36 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444554444444444444443
No 86
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.77 E-value=2.9e+02 Score=22.02 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 129 TTDGMKQELDAATLEVSELKRRMTATSEE 157 (748)
Q Consensus 129 ~~~~lk~~l~~~~~ei~~l~~~l~~l~~e 157 (748)
.|..++.++..++.+...|...+..+..+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445444444444444444444444333
No 87
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.29 E-value=1.1e+02 Score=21.90 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=9.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHh
Q 047747 635 LELEVASLGNQKSDLEEQMRLKIEE 659 (748)
Q Consensus 635 l~~~l~~l~~e~~~l~~~~~~le~e 659 (748)
++..+..+..+...|...+..+..+
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 88
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=22.25 E-value=4.9e+02 Score=24.37 Aligned_cols=25 Identities=16% Similarity=-0.100 Sum_probs=2.5
Q ss_pred hhhhhHHHHHHHHHHHHHhhccCch
Q 047747 25 QLKGNKIEIEDKFKKILKLVQDKDL 49 (748)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (748)
.|.+.-++...+...==|||.+.|+
T Consensus 37 lL~diP~~~~~~~~~~~kll~e~~e 61 (242)
T 3uux_B 37 LLNEIPTKEGLKSDADGKLLTEGGE 61 (242)
T ss_dssp GGGCCC-------------------
T ss_pred HHhhcccccccccccccchhhccCc
Confidence 3444444444444444467776665
No 89
>3efd_K KCSA; helix bundle, C-terminus, immune system; 2.60A {Escherichia coli}
Probab=21.39 E-value=93 Score=18.11 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhhhHHH
Q 047747 64 EGFHSQYQSLYAQYDNLRGE 83 (748)
Q Consensus 64 ~e~~~~~~~l~~~~~~~~~~ 83 (748)
+-|-+.-++|.++||.+-.-
T Consensus 7 eay~~atRALHeRFDRLEr~ 26 (30)
T 3efd_K 7 EAYTRTTRALHERFDRLERM 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45777889999999987543
No 90
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.27 E-value=6.2e+02 Score=26.87 Aligned_cols=28 Identities=7% Similarity=-0.013 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047747 212 KIEAELNREVSDMKRQLTARSEEKEALN 239 (748)
Q Consensus 212 ~~~~~l~~~l~~l~~~l~~l~~e~~~~~ 239 (748)
.+...+..++..+...+..++.++...-
T Consensus 123 ~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 123 ARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555554443
No 91
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=20.95 E-value=2.5e+02 Score=23.34 Aligned_cols=98 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhccchHHHHHHHHHHHhhHHHHHHHHHH
Q 047747 382 NKSLTLKISEMSNEFQQAQNLIQDLMAESSQLKEKMVEKEREVSSLVEMHEVRGNETLAQIKELQAQVTGLELELESLQA 461 (748)
Q Consensus 382 l~~l~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~l~~le~e~~~l~~~~~~~~~~~~~~~~~~e~el~~l~~~~~~l~~ 461 (748)
+..+-..+.+....+..+......++.+...+..++..+..++..+...|.-.+..+.-+...++..+..-......-..
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKr 83 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKR 83 (130)
T ss_dssp -----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 047747 462 HNRDMVVQIDSKAAAAKQ 479 (748)
Q Consensus 462 ~l~~l~~~l~~~~~~~~~ 479 (748)
.+..|+..+..+-..++.
T Consensus 84 kLAqLQ~AY~~LfqeYd~ 101 (130)
T 3cl3_D 84 KLAQLQVAYHQLFQEYDN 101 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
No 92
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.29 E-value=1.9e+02 Score=21.45 Aligned_cols=42 Identities=24% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhHHHHHHhh
Q 047747 629 TARIKSLELEVASLGNQKSDLEEQMRLKIEEGFHLTEEKLGL 670 (748)
Q Consensus 629 ~~~~~~l~~~l~~l~~e~~~l~~~~~~le~e~~~l~~~~~~l 670 (748)
...+..|+..+..+......+.....++..++..|..++..+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 93
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=20.08 E-value=3.4e+02 Score=21.70 Aligned_cols=6 Identities=33% Similarity=0.219 Sum_probs=2.1
Q ss_pred HHHHHH
Q 047747 452 LELELE 457 (748)
Q Consensus 452 l~~~~~ 457 (748)
.+.++.
T Consensus 47 ~E~QL~ 52 (107)
T 2k48_A 47 HEQQLV 52 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
Done!