BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047750
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
pdb|1PVM|B Chain B, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
Length = 184
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 15/86 (17%)
Query: 71 GHQKKWVDELLNGSFKILDVCSTAQNALLQMKESAL-GLQSVLRRRRGDETELTSE---I 126
GH V++++N +FK ++ +T +A+ M E+ L GL V++ G++ L SE I
Sbjct: 5 GHMFMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGL--VVKDDNGNDVGLLSERSII 62
Query: 127 KKYLASRK---------AMRKAINKT 143
K+++ K MRK I K
Sbjct: 63 KRFIPRNKKPDEVPIRLVMRKPIPKV 88
>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
pdb|2QH1|B Chain B, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
Length = 198
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 15/86 (17%)
Query: 71 GHQKKWVDELLNGSFKILDVCSTAQNALLQMKESAL-GLQSVLRRRRGDETELTSE---I 126
GH V++++N +FK ++ +T +A+ M E+ L GL V++ G++ L SE I
Sbjct: 19 GHMFMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGL--VVKDDNGNDVGLLSERSII 76
Query: 127 KKYLASRK---------AMRKAINKT 143
K+++ K MRK I K
Sbjct: 77 KRFIPRNKKPDEVPIRLVMRKPIPKV 102
>pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a.
pdb|2BPO|B Chain B, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a
Length = 682
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 214 QTEMNEF-EKVDAALSTVVGHKTIKSDNIIYMQNQLKEMESSI 255
Q E E+ +K+D + VV H + + +Y+Q++LK+ E +
Sbjct: 580 QDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYEDQV 622
>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BF4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BN4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
pdb|2BN4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
Length = 682
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 214 QTEMNEF-EKVDAALSTVVGHKTIKSDNIIYMQNQLKEMESSI 255
Q E E+ +K+D + VV H + + +Y+Q++LK+ E +
Sbjct: 580 QDEWPEYAKKLDGSFEMVVAHSRLPNTKKVYVQDKLKDYEDQV 622
>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
pdb|1XDF|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
Length = 157
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 165 VLKEVEAVTLATFEYLLSFISGSRTPSKLSRFALVTKLI 203
VL ++EAV A Y S + G P + + + TKL+
Sbjct: 66 VLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLV 104
>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
pdb|1IFV|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
Length = 155
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 165 VLKEVEAVTLATFEYLLSFISGSRTPSKLSRFALVTKLI 203
VL +++A+ A+FEY S + G+ L + +KL+
Sbjct: 66 VLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLL 104
>pdb|1U5T|A Chain A, Structure Of The Escrt-Ii Endosomal Trafficking Complex
pdb|1W7P|A Chain A, The Crystal Structure Of Endosomal Complex Escrt-Ii
(Vps22VPS25VPS36)
Length = 233
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 47 GLQDLHDSVEKILQLPLVQQALARGHQKKWV----DELLNGSFKILDVCSTAQNALLQMK 102
GL DL S++ + L + RG KK++ +EL + KIL++CS + + +
Sbjct: 130 GLDDLEKSIDMLKSLECFEIFQIRG--KKFLRSVPNELTSDQTKILEICSILGYSSISLL 187
Query: 103 ESALGLQSVLRRRRGDE 119
++ LG ++V + DE
Sbjct: 188 KANLGWEAVRSKSALDE 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,437,542
Number of Sequences: 62578
Number of extensions: 215980
Number of successful extensions: 632
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 8
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)