BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047750
         (282 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q337C0|U496D_ORYSJ UPF0496 protein 4 OS=Oryza sativa subsp. japonica GN=Os10g0513300
           PE=2 SV=1
          Length = 456

 Score = 37.7 bits (86), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 34/188 (18%)

Query: 27  LRRLRSSQAASTSSLGH---ELNGLQDLHDSVEKI---LQLPLVQQALARGHQKKWVDEL 80
           LR+L+   A+   +L      ++ L +LH ++  +   L+LP+           KWVD  
Sbjct: 47  LRKLKPEAASDVLTLSWMRLAVDCLSELHTNIANLITDLELPVSDW------DDKWVDIY 100

Query: 81  LNGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGDETELTS------------EIKK 128
           LN S K+LD+C    + L ++ +  L LQ  L    G E+ + S            E  +
Sbjct: 101 LNSSVKLLDICIALSSELSRLDQGQLLLQYAL-HVLGSESGVPSQEQLKRAEPSLREWME 159

Query: 129 YLASRKAMRKAINKTLGNLKG------VENECSPSINEEHVSVLKEVEAVTLATFEYLLS 182
            +  R A   + + TL  L G      V+N     +    +  L  +E+VT+      ++
Sbjct: 160 LVGVRCARLVSCSATLQELAGNLSLMKVKNSAKGKV---LMRALYGIESVTVFVCSIFVA 216

Query: 183 FISGSRTP 190
            +SGS  P
Sbjct: 217 VLSGSPKP 224


>sp|A2Z9A6|U496D_ORYSI UPF0496 protein 4 OS=Oryza sativa subsp. indica GN=OsI_033149 PE=3
           SV=2
          Length = 456

 Score = 36.6 bits (83), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 12/92 (13%)

Query: 27  LRRLRSSQAASTSSLGH---ELNGLQDLHDSVEKI---LQLPLVQQALARGHQKKWVDEL 80
           LR+L+   A+   +L      ++ L +LH ++  +   L+LP+           KWVD  
Sbjct: 47  LRKLKPEAASDVLTLSWMRLAVDCLSELHTNIANLITDLELPVSDW------DDKWVDIY 100

Query: 81  LNGSFKILDVCSTAQNALLQMKESALGLQSVL 112
           LN S K+LD+C    + L ++ +  L LQ  L
Sbjct: 101 LNSSVKLLDICIALSSELSRLDQGQLLLQYAL 132


>sp|Q9LMM6|BPS1_ARATH Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2
           SV=1
          Length = 349

 Score = 33.5 bits (75), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 9/121 (7%)

Query: 33  SQAASTSSLGHELNGLQDLHDSVEKI---LQLPLVQQALARGHQKKWVDELLNGSFKILD 89
           S   + S +   +  L + H+ ++ +   L+LP+         + KWVD  L+ S K+LD
Sbjct: 56  SDILTVSWMKQAMESLCETHNGIKTLITDLELPV------SDWEDKWVDVYLDISVKLLD 109

Query: 90  VCSTAQNALLQMKESALGLQSVLRRRRGDETELTSEIKKYLASRKAMRKAINKTLGNLKG 149
           +C+   + L ++ +  L LQ  L     +  +  S+ +  L S K    + N  + N + 
Sbjct: 110 LCNAFSSELTRLNQGHLLLQFALHNLEANSPQNLSKAQSSLDSWKQHIVSKNPRIENCRA 169

Query: 150 V 150
           +
Sbjct: 170 I 170


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.128    0.342 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,105,414
Number of Sequences: 539616
Number of extensions: 3195985
Number of successful extensions: 11381
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 174
Number of HSP's that attempted gapping in prelim test: 11231
Number of HSP's gapped (non-prelim): 337
length of query: 282
length of database: 191,569,459
effective HSP length: 116
effective length of query: 166
effective length of database: 128,974,003
effective search space: 21409684498
effective search space used: 21409684498
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)