Query 047750
Match_columns 282
No_of_seqs 112 out of 314
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 04:11:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047750.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047750hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pnv_A Small conductance calci 60.8 16 0.00054 23.8 4.6 29 241-269 11-39 (43)
2 3dyt_A Sorting nexin-9; 3-heli 47.5 1.5E+02 0.0051 27.1 10.9 62 39-110 229-290 (366)
3 3ljm_A Coil Ser L9C; de novo d 46.8 30 0.001 20.3 3.7 19 246-264 8-26 (31)
4 2w6b_A RHO guanine nucleotide 41.0 83 0.0029 21.4 6.2 44 95-145 9-52 (56)
5 2akf_A Coronin-1A; coiled coil 38.6 28 0.00097 20.8 2.8 16 241-256 15-30 (32)
6 1mof_A Moloney murine leukemia 38.5 47 0.0016 22.7 4.3 30 247-276 3-32 (55)
7 2ket_A Cathelicidin-6; antimic 36.4 30 0.001 19.7 2.6 15 129-143 3-17 (27)
8 1aq5_A Matrilin-1, CMP, cartil 35.6 65 0.0022 21.3 4.5 20 241-260 25-44 (47)
9 3onj_A T-snare VTI1; helix, HA 32.8 1.5E+02 0.005 22.0 6.9 36 239-274 34-74 (97)
10 3c3f_A Alpha/beta peptide with 32.0 81 0.0028 19.3 4.1 22 244-265 6-27 (34)
11 4akv_A Sorting nexin-33; trans 28.8 3.4E+02 0.012 24.9 12.5 62 39-110 249-310 (386)
12 2l5g_B Putative uncharacterize 27.8 82 0.0028 20.3 3.9 31 217-254 8-38 (42)
13 2yy0_A C-MYC-binding protein; 27.3 1.1E+02 0.0038 20.4 4.8 35 237-271 17-51 (53)
14 3kyj_A CHEA3, putative histidi 26.5 72 0.0024 25.5 4.4 29 241-269 17-51 (144)
15 1y4m_A HERV-FRD_6P24.1 proviru 25.9 36 0.0012 23.1 2.0 28 249-276 3-30 (53)
16 3n06_A Prolactin, PRL; PH depe 24.5 79 0.0027 26.4 4.4 28 243-270 98-125 (186)
17 1fio_A SSO1 protein; four heli 22.4 3.1E+02 0.01 22.1 9.6 69 82-150 2-75 (196)
18 2lw1_A ABC transporter ATP-bin 22.3 79 0.0027 23.0 3.5 7 218-224 22-28 (89)
19 1kd8_A GABH AIV, GCN4 acid bas 21.0 89 0.003 19.4 2.9 23 244-266 6-28 (36)
20 1s94_A S-syntaxin; three helix 21.0 3.3E+02 0.011 21.9 8.3 64 87-150 41-107 (180)
21 2lch_A Protein OR38; structura 20.9 1.3E+02 0.0043 22.4 4.6 28 242-269 13-46 (113)
No 1
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=60.76 E-value=16 Score=23.83 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhhHHHHHHHH
Q 047750 241 IIYMQNQLKEMESSIQDLEEGLESLSRRL 269 (282)
Q Consensus 241 ~~~~~~~le~LE~~I~~lE~gle~lFR~L 269 (282)
+.+++.+-++||..|..||..++.+-+.+
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888999999999999998876543
No 2
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=47.48 E-value=1.5e+02 Score=27.06 Aligned_cols=62 Identities=10% Similarity=0.086 Sum_probs=41.7
Q ss_pred hhHHHHHHhhHHHHHhHHHHHcCchhHHHHhhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHH
Q 047750 39 SSLGHELNGLQDLHDSVEKILQLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQS 110 (282)
Q Consensus 39 ~s~~~~L~~L~~l~~~v~~Ll~lP~~Q~aL~~~~~~k~vde~LD~Sl~LLDvC~~~~d~l~~lke~v~eLqs 110 (282)
..+..+|..+++.|+.+.++..- | -..+...+.|.-=..++++++++|+|..=+..++..+.
T Consensus 229 ~~L~~al~~l~~~~~~i~~l~~~---q-------a~~d~~~l~E~L~~Y~~~l~avKd~l~~r~~aL~k~~e 290 (366)
T 3dyt_A 229 TDLNDAITEAGKTYEEIASLVAE---Q-------PKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKE 290 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---S-------GGGTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---H-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888888888888888732 1 12345566666666788888899987665554444443
No 3
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=46.83 E-value=30 Score=20.32 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=8.8
Q ss_pred HHHHHHHHhHHHHHhhHHH
Q 047750 246 NQLKEMESSIQDLEEGLES 264 (282)
Q Consensus 246 ~~le~LE~~I~~lE~gle~ 264 (282)
++.-.||.-++.||..+|.
T Consensus 8 kkcaalesklqalekklea 26 (31)
T 3ljm_A 8 KKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 4
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=40.99 E-value=83 Score=21.43 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=26.3
Q ss_pred HHHHHHhHHHHHHHHHHHhhcCCCchhHhHHHHHHHHHHHHHHHHHHHHHh
Q 047750 95 QNALLQMKESALGLQSVLRRRRGDETELTSEIKKYLASRKAMRKAINKTLG 145 (282)
Q Consensus 95 ~d~l~~lke~v~eLqsaLRRr~g~~~~~~~~v~~y~~~rkk~kK~i~K~l~ 145 (282)
-|+.-++|..|++||--..+-+ ..+..=-++||++.+-+.|.+.
T Consensus 9 VDtVYaLkDqV~eL~qe~k~m~-------k~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 9 VDTVYALKDEVQELRQDNKKMK-------KSLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666665555432 1233345788888888877744
No 5
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=38.62 E-value=28 Score=20.77 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhHH
Q 047750 241 IIYMQNQLKEMESSIQ 256 (282)
Q Consensus 241 ~~~~~~~le~LE~~I~ 256 (282)
+|.+|+++..||..++
T Consensus 15 vq~lq~r~drle~tvq 30 (32)
T 2akf_A 15 VQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5677778887777765
No 6
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=38.46 E-value=47 Score=22.71 Aligned_cols=30 Identities=43% Similarity=0.622 Sum_probs=26.2
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHhhhHHh
Q 047750 247 QLKEMESSIQDLEEGLESLSRRLIKARVPL 276 (282)
Q Consensus 247 ~le~LE~~I~~lE~gle~lFR~LI~tRVsL 276 (282)
-+++++.+|..++..+..+--..+|+|-+|
T Consensus 3 dl~~~~~si~~l~~ql~sla~vvlQNRraL 32 (55)
T 1mof_A 3 DLREVEKSISNLEKSLTSLSEVVLQNRRGL 32 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888899999999999999999999876
No 7
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=36.35 E-value=30 Score=19.68 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHH
Q 047750 129 YLASRKAMRKAINKT 143 (282)
Q Consensus 129 y~~~rkk~kK~i~K~ 143 (282)
|-|+|||.||-++|.
T Consensus 3 fkrfrkkfkklfkkl 17 (27)
T 2ket_A 3 FKRFRKKFKKLFKKL 17 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 568899988877765
No 8
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=35.58 E-value=65 Score=21.30 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhHHHHHh
Q 047750 241 IIYMQNQLKEMESSIQDLEE 260 (282)
Q Consensus 241 ~~~~~~~le~LE~~I~~lE~ 260 (282)
++.+..+|+++-..++.||+
T Consensus 25 l~~Lt~kL~~vt~rle~lEn 44 (47)
T 1aq5_A 25 INTLQQKLEAVAKRIEALEN 44 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444556665555655554
No 9
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=32.77 E-value=1.5e+02 Score=22.00 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHHhhHHHH-----HHHHHhhhH
Q 047750 239 DNIIYMQNQLKEMESSIQDLEEGLESL-----SRRLIKARV 274 (282)
Q Consensus 239 e~~~~~~~~le~LE~~I~~lE~gle~l-----FR~LI~tRV 274 (282)
..+..+...+++.+..|+.+|.++..+ +|.-.++|+
T Consensus 34 ~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~kl 74 (97)
T 3onj_A 34 TTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKL 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 347888899999999999999999998 888777775
No 10
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=31.97 E-value=81 Score=19.34 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhHHHHHhhHHHH
Q 047750 244 MQNQLKEMESSIQDLEEGLESL 265 (282)
Q Consensus 244 ~~~~le~LE~~I~~lE~gle~l 265 (282)
+-.+.|+|=.+-.+||.+++.+
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHH
Confidence 3345666666667777777765
No 11
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=28.82 E-value=3.4e+02 Score=24.89 Aligned_cols=62 Identities=8% Similarity=0.064 Sum_probs=39.4
Q ss_pred hhHHHHHHhhHHHHHhHHHHHcCchhHHHHhhhhhhhHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHH
Q 047750 39 SSLGHELNGLQDLHDSVEKILQLPLVQQALARGHQKKWVDELLNGSFKILDVCSTAQNALLQMKESALGLQS 110 (282)
Q Consensus 39 ~s~~~~L~~L~~l~~~v~~Ll~lP~~Q~aL~~~~~~k~vde~LD~Sl~LLDvC~~~~d~l~~lke~v~eLqs 110 (282)
..+..+|+.+++.++.+.++.. . +-......+.|..-...+++++++|+|-.-+..++..+.
T Consensus 249 ~~Ls~aL~~l~~~~e~i~~l~~---~-------Qa~~d~~~L~E~L~~Y~~ll~s~Kdll~~R~~aL~k~~e 310 (386)
T 4akv_A 249 EALNSAISHTGRTYEAIGEMFA---E-------QPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKE 310 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---H-------GGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888877762 1 122344556666666778888888877665544444333
No 12
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.79 E-value=82 Score=20.30 Aligned_cols=31 Identities=16% Similarity=0.459 Sum_probs=21.0
Q ss_pred hhhhHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHh
Q 047750 217 MNEFEKVDAALSTVVGHKTIKSDNIIYMQNQLKEMESS 254 (282)
Q Consensus 217 ~nEle~vDaal~~l~~~~~~~~e~~~~~~~~le~LE~~ 254 (282)
+.-+++||+++..- .+++..+|++++.||..
T Consensus 8 ~qkI~kVdrEI~Kt-------e~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 8 IQNMDRVDREITMV-------EQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 34466777776521 45678888888888764
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.35 E-value=1.1e+02 Score=20.39 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=23.3
Q ss_pred CchhHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHh
Q 047750 237 KSDNIIYMQNQLKEMESSIQDLEEGLESLSRRLIK 271 (282)
Q Consensus 237 ~~e~~~~~~~~le~LE~~I~~lE~gle~lFR~LI~ 271 (282)
...++..++...++|..-++.|...++.+=++|-|
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666677777777777777777777766665543
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=26.54 E-value=72 Score=25.45 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhHHHHHhh------HHHHHHHH
Q 047750 241 IIYMQNQLKEMESSIQDLEEG------LESLSRRL 269 (282)
Q Consensus 241 ~~~~~~~le~LE~~I~~lE~g------le~lFR~L 269 (282)
++++.+.|+.+|..+..+|.+ ++.+||.+
T Consensus 17 leEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~ 51 (144)
T 3kyj_A 17 ADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAV 51 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 356777888888888888765 67788864
No 15
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=25.89 E-value=36 Score=23.13 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=24.0
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHhhhHHh
Q 047750 249 KEMESSIQDLEEGLESLSRRLIKARVPL 276 (282)
Q Consensus 249 e~LE~~I~~lE~gle~lFR~LI~tRVsL 276 (282)
++++.+|..+++.+..+--..+|+|-+|
T Consensus 3 ~~l~~sl~~l~~ql~sla~vvlQNRraL 30 (53)
T 1y4m_A 3 DTMAKALTTMQEQIDSLAAVVLQNRRGL 30 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577789999999999999999999876
No 16
>3n06_A Prolactin, PRL; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3nce_A 3mzg_A 3ncc_A 2q98_A 3d48_P 3ncb_A 3n0p_A 3ncf_A 1n9d_A 1rw5_A 3npz_A 3ew3_A
Probab=24.46 E-value=79 Score=26.40 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHHHH
Q 047750 243 YMQNQLKEMESSIQDLEEGLESLSRRLI 270 (282)
Q Consensus 243 ~~~~~le~LE~~I~~lE~gle~lFR~LI 270 (282)
.+..++.+++..+.+|++|++.+++++.
T Consensus 98 ~il~Kakei~e~~~~L~egi~~i~~~~~ 125 (186)
T 3n06_A 98 AILSKAVEIEEQTKRLLERMELIVSQVH 125 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456888888899999999999988763
No 17
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=22.44 E-value=3.1e+02 Score=22.11 Aligned_cols=69 Identities=9% Similarity=0.168 Sum_probs=49.4
Q ss_pred hhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhcCCC-c----hhHhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 047750 82 NGSFKILDVCSTAQNALLQMKESALGLQSVLRRRRGD-E----TELTSEIKKYLASRKAMRKAINKTLGNLKGV 150 (282)
Q Consensus 82 D~Sl~LLDvC~~~~d~l~~lke~v~eLqsaLRRr~g~-~----~~~~~~v~~y~~~rkk~kK~i~K~l~~LK~~ 150 (282)
|+.-.++|.|...+..|-.++..+.+|+....+--+. + ..+...+......-+++-+.+.+.+..|+..
T Consensus 2 ~~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~ 75 (196)
T 1fio_A 2 HDFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRD 75 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556688999999999999999999999887763321 1 1356667766666666666777666666554
No 18
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=22.27 E-value=79 Score=23.04 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=2.9
Q ss_pred hhhHHHH
Q 047750 218 NEFEKVD 224 (282)
Q Consensus 218 nEle~vD 224 (282)
.|++.++
T Consensus 22 rEle~le 28 (89)
T 2lw1_A 22 RELEQLP 28 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 19
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=21.03 E-value=89 Score=19.42 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhHHHHHhhHHHHH
Q 047750 244 MQNQLKEMESSIQDLEEGLESLS 266 (282)
Q Consensus 244 ~~~~le~LE~~I~~lE~gle~lF 266 (282)
+-.+.|+|..+-.+||.++++|=
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~ 28 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLE 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 33466777777778888877753
No 20
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=20.95 E-value=3.3e+02 Score=21.89 Aligned_cols=64 Identities=5% Similarity=0.132 Sum_probs=46.6
Q ss_pred HHHHhhHHHHHHHHhHHHHHHHHHHHhhcCC---CchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 047750 87 ILDVCSTAQNALLQMKESALGLQSVLRRRRG---DETELTSEIKKYLASRKAMRKAINKTLGNLKGV 150 (282)
Q Consensus 87 LLDvC~~~~d~l~~lke~v~eLqsaLRRr~g---~~~~~~~~v~~y~~~rkk~kK~i~K~l~~LK~~ 150 (282)
+++-|...++.|-.+++.+..|+..-.+--+ .+..+...+...+..-++.-+.|++.+..|+..
T Consensus 41 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~ 107 (180)
T 1s94_A 41 FFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELN 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999877555222 234456677777777777778888877777764
No 21
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=20.89 E-value=1.3e+02 Score=22.44 Aligned_cols=28 Identities=11% Similarity=0.265 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhHHHHHh------hHHHHHHHH
Q 047750 242 IYMQNQLKEMESSIQDLEE------GLESLSRRL 269 (282)
Q Consensus 242 ~~~~~~le~LE~~I~~lE~------gle~lFR~L 269 (282)
+++.+.++.++..+..+|. -++.+||.+
T Consensus 13 ~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~ 46 (113)
T 2lch_A 13 DELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLV 46 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4556677777777777763 356677754
Done!