Query 047751
Match_columns 580
No_of_seqs 232 out of 1642
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:47:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 3.1E-59 6.8E-64 539.8 46.4 425 132-578 24-470 (832)
2 PRK03562 glutathione-regulated 100.0 8.6E-53 1.9E-57 474.4 49.9 379 153-534 2-380 (621)
3 PRK03659 glutathione-regulated 100.0 8.8E-51 1.9E-55 457.2 50.4 372 157-534 6-377 (601)
4 PRK10669 putative cation:proto 100.0 2E-50 4.3E-55 452.1 51.3 376 156-533 6-387 (558)
5 COG0475 KefB Kef-type K+ trans 100.0 3.9E-48 8.5E-53 415.1 47.7 372 156-532 6-382 (397)
6 KOG1650 Predicted K+/H+-antipo 100.0 2E-47 4.4E-52 436.0 30.0 426 131-578 3-455 (769)
7 COG4651 RosB Kef-type K+ trans 100.0 1.2E-43 2.6E-48 350.6 34.9 380 153-534 3-388 (408)
8 PRK05326 potassium/proton anti 100.0 9.4E-39 2E-43 358.0 44.5 369 156-529 6-382 (562)
9 TIGR00932 2a37 transporter, mo 100.0 1.3E-36 2.8E-41 311.2 34.7 271 166-440 2-273 (273)
10 PF00999 Na_H_Exchanger: Sodiu 100.0 1.3E-41 2.8E-46 363.4 -3.2 365 163-532 3-376 (380)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 1.4E-27 3E-32 268.0 41.2 342 163-506 21-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 2.2E-25 4.8E-30 247.6 41.8 362 163-533 5-407 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 1.1E-23 2.4E-28 228.3 42.9 374 157-533 7-405 (429)
14 COG3263 NhaP-type Na+/H+ and K 99.9 4.3E-23 9.3E-28 213.9 31.3 355 162-524 13-375 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.9 1.7E-21 3.7E-26 217.0 38.0 335 161-503 14-380 (559)
16 PRK14853 nhaA pH-dependent sod 99.7 6.1E-14 1.3E-18 149.6 40.2 297 205-533 61-394 (423)
17 KOG4505 Na+/H+ antiporter [Ino 99.7 2.5E-15 5.4E-20 151.7 26.0 336 164-502 22-382 (467)
18 KOG1965 Sodium/hydrogen exchan 99.6 4.3E-13 9.4E-18 145.7 26.5 374 158-535 37-456 (575)
19 TIGR00773 NhaA Na+/H+ antiport 99.3 2.9E-09 6.4E-14 112.0 30.2 268 205-503 51-344 (373)
20 PRK14856 nhaA pH-dependent sod 99.1 8.5E-08 1.8E-12 102.7 27.1 298 204-533 66-430 (438)
21 PRK14855 nhaA pH-dependent sod 98.9 8.3E-07 1.8E-11 94.8 26.9 264 205-503 62-383 (423)
22 PRK09560 nhaA pH-dependent sod 98.9 6.3E-07 1.4E-11 94.7 24.4 297 205-532 58-383 (389)
23 PRK09561 nhaA pH-dependent sod 98.9 8.1E-07 1.7E-11 93.8 24.4 298 205-533 58-383 (388)
24 PRK14854 nhaA pH-dependent sod 98.8 8.3E-07 1.8E-11 93.4 24.3 297 205-532 55-377 (383)
25 COG3004 NhaA Na+/H+ antiporter 98.6 8.9E-06 1.9E-10 83.1 21.6 290 212-533 68-385 (390)
26 PF06965 Na_H_antiport_1: Na+/ 98.5 4E-07 8.7E-12 96.0 9.6 275 204-509 53-357 (378)
27 KOG1966 Sodium/hydrogen exchan 98.4 9.6E-08 2.1E-12 104.2 3.0 320 167-498 53-407 (670)
28 PF05684 DUF819: Protein of un 98.2 0.0059 1.3E-07 65.7 32.8 287 179-494 24-336 (378)
29 COG0385 Predicted Na+-dependen 97.7 0.066 1.4E-06 55.9 28.4 108 206-317 35-145 (319)
30 PRK12460 2-keto-3-deoxyglucona 97.6 0.031 6.7E-07 58.1 24.6 249 214-534 50-304 (312)
31 PF03601 Cons_hypoth698: Conse 97.2 0.29 6.4E-06 51.2 26.7 108 177-288 23-139 (305)
32 PF03812 KdgT: 2-keto-3-deoxyg 97.2 0.1 2.2E-06 54.1 22.4 276 183-534 15-310 (314)
33 TIGR00932 2a37 transporter, mo 97.2 0.026 5.7E-07 57.8 18.6 126 382-509 4-131 (273)
34 COG0786 GltS Na+/glutamate sym 97.2 0.14 3.1E-06 54.5 23.9 107 376-482 224-341 (404)
35 PRK03562 glutathione-regulated 97.1 0.031 6.7E-07 64.2 20.1 131 376-508 11-142 (621)
36 TIGR00210 gltS sodium--glutama 97.1 0.61 1.3E-05 50.7 28.2 121 393-515 244-374 (398)
37 TIGR00698 conserved hypothetic 97.1 0.58 1.3E-05 49.6 32.2 97 176-276 27-130 (335)
38 PRK03659 glutathione-regulated 96.9 0.071 1.5E-06 61.0 20.1 132 376-509 11-143 (601)
39 COG0475 KefB Kef-type K+ trans 96.9 0.072 1.6E-06 57.9 19.2 137 375-513 11-151 (397)
40 PF03616 Glt_symporter: Sodium 96.9 0.89 1.9E-05 48.9 28.5 93 393-486 246-343 (368)
41 PRK10669 putative cation:proto 96.8 0.091 2E-06 59.6 19.6 133 378-512 14-147 (558)
42 PF13593 DUF4137: SBF-like CPA 96.7 1 2.2E-05 47.4 27.2 109 207-318 29-142 (313)
43 COG2855 Predicted membrane pro 96.5 1.5 3.2E-05 46.2 27.7 98 176-277 33-134 (334)
44 PF03956 DUF340: Membrane prot 96.5 0.036 7.8E-07 54.0 11.8 127 185-318 3-134 (191)
45 TIGR00841 bass bile acid trans 96.4 1.5 3.2E-05 45.5 27.8 103 208-316 7-114 (286)
46 TIGR00783 ccs citrate carrier 96.2 0.69 1.5E-05 49.0 20.5 259 224-508 40-327 (347)
47 PRK05326 potassium/proton anti 96.2 0.16 3.4E-06 57.8 16.8 127 377-505 13-143 (562)
48 TIGR00793 kdgT 2-keto-3-deoxyg 96.0 0.67 1.4E-05 48.0 18.7 248 215-534 51-310 (314)
49 PLN03159 cation/H(+) antiporte 96.0 0.23 5E-06 59.0 17.6 137 167-304 280-421 (832)
50 PF01758 SBF: Sodium Bile acid 95.8 0.4 8.6E-06 46.4 15.4 101 213-318 2-107 (187)
51 TIGR00832 acr3 arsenical-resis 95.7 3.5 7.6E-05 43.6 28.5 98 213-316 47-150 (328)
52 PF03601 Cons_hypoth698: Conse 95.7 0.38 8.3E-06 50.3 15.8 153 380-533 8-169 (305)
53 TIGR03082 Gneg_AbrB_dup membra 95.6 0.34 7.5E-06 45.6 13.8 102 164-268 3-109 (156)
54 TIGR00831 a_cpa1 Na+/H+ antipo 95.5 0.28 6E-06 55.3 15.1 117 378-494 6-123 (525)
55 PF06826 Asp-Al_Ex: Predicted 95.4 0.27 6E-06 47.0 12.5 111 176-288 19-136 (169)
56 PRK03818 putative transporter; 95.4 0.26 5.6E-06 55.9 14.2 103 183-287 33-141 (552)
57 COG2855 Predicted membrane pro 95.2 0.4 8.7E-06 50.3 13.9 136 387-524 30-166 (334)
58 TIGR03802 Asp_Ala_antiprt aspa 95.1 0.2 4.4E-06 56.9 12.3 110 177-288 412-530 (562)
59 PRK05274 2-keto-3-deoxyglucona 94.8 1.7 3.8E-05 45.9 17.6 131 399-533 178-311 (326)
60 TIGR00698 conserved hypothetic 94.7 1.4 3E-05 46.8 16.3 108 392-499 29-140 (335)
61 TIGR00844 c_cpa1 na(+)/h(+) an 94.5 0.45 9.8E-06 55.5 13.1 108 384-492 28-145 (810)
62 PF05145 AmoA: Putative ammoni 94.4 0.75 1.6E-05 48.5 13.6 105 159-267 155-265 (318)
63 TIGR03802 Asp_Ala_antiprt aspa 94.1 0.47 1E-05 54.0 12.1 99 161-265 15-117 (562)
64 PF03616 Glt_symporter: Sodium 94.0 0.36 7.8E-06 51.9 10.5 93 177-269 244-340 (368)
65 PRK04972 putative transporter; 93.4 0.53 1.1E-05 53.5 11.0 126 159-288 384-525 (558)
66 PF03390 2HCT: 2-hydroxycarbox 93.3 15 0.00032 40.1 29.0 329 157-508 30-394 (414)
67 COG0786 GltS Na+/glutamate sym 93.2 0.65 1.4E-05 49.6 10.4 115 166-280 232-356 (404)
68 PRK04972 putative transporter; 93.1 0.67 1.5E-05 52.6 11.2 120 160-287 16-140 (558)
69 PF05145 AmoA: Putative ammoni 92.4 17 0.00036 38.4 30.1 149 377-534 159-314 (318)
70 COG3180 AbrB Putative ammonia 91.9 20 0.00043 38.2 33.4 322 157-533 7-346 (352)
71 TIGR03082 Gneg_AbrB_dup membra 91.8 12 0.00025 35.2 16.8 144 379-531 4-154 (156)
72 PRK12460 2-keto-3-deoxyglucona 91.4 2.5 5.5E-05 44.2 11.9 86 183-271 169-254 (312)
73 TIGR01625 YidE_YbjL_dupl AspT/ 91.3 3 6.4E-05 39.3 11.4 108 180-289 21-138 (154)
74 COG2985 Predicted permease [Ge 91.3 2 4.4E-05 47.1 11.5 103 183-291 37-146 (544)
75 PF03956 DUF340: Membrane prot 91.3 3 6.4E-05 40.7 11.8 127 398-532 2-137 (191)
76 TIGR00946 2a69 he Auxin Efflux 91.2 7.8 0.00017 40.6 15.9 112 176-290 178-291 (321)
77 COG4651 RosB Kef-type K+ trans 89.5 2.6 5.6E-05 43.7 9.9 121 376-502 12-136 (408)
78 COG0798 ACR3 Arsenite efflux p 88.8 35 0.00076 36.2 27.0 133 180-318 17-160 (342)
79 TIGR00946 2a69 he Auxin Efflux 88.8 33 0.00072 35.8 27.7 135 394-532 181-319 (321)
80 TIGR00210 gltS sodium--glutama 88.6 23 0.0005 38.6 17.1 122 160-281 223-354 (398)
81 COG3493 CitS Na+/citrate sympo 88.4 40 0.00086 36.3 25.0 90 419-509 319-414 (438)
82 PF00999 Na_H_Exchanger: Sodiu 87.9 0.11 2.3E-06 55.7 -1.3 111 381-491 7-123 (380)
83 TIGR00808 malonate_madM malona 87.8 9 0.00019 37.6 11.7 107 157-263 14-133 (254)
84 PRK03818 putative transporter; 87.3 3.5 7.6E-05 46.8 10.4 101 183-285 403-513 (552)
85 COG2431 Predicted membrane pro 87.3 3.2 6.9E-05 42.4 8.8 90 182-274 108-201 (297)
86 PF05684 DUF819: Protein of un 86.8 25 0.00055 38.0 16.1 105 423-530 56-165 (378)
87 COG0025 NhaP NhaP-type Na+/H+ 85.8 28 0.0006 38.3 16.1 116 379-494 15-135 (429)
88 PRK09903 putative transporter 83.6 38 0.00082 35.4 15.4 109 178-290 171-281 (314)
89 PRK09903 putative transporter 81.4 73 0.0016 33.3 16.6 134 395-533 173-310 (314)
90 PRK04125 murein hydrolase regu 80.6 24 0.00052 32.7 10.9 98 154-255 6-111 (141)
91 TIGR00783 ccs citrate carrier 79.5 45 0.00098 35.6 13.9 107 167-275 190-306 (347)
92 PF03977 OAD_beta: Na+-transpo 79.4 47 0.001 35.2 13.7 75 424-500 68-142 (360)
93 PF03547 Mem_trans: Membrane t 79.2 31 0.00067 36.8 13.1 104 398-502 10-118 (385)
94 COG3180 AbrB Putative ammonia 78.9 36 0.00078 36.3 12.9 105 161-268 190-299 (352)
95 COG0679 Predicted permeases [G 78.0 83 0.0018 32.9 15.6 110 177-289 165-277 (311)
96 COG1346 LrgB Putative effector 77.9 80 0.0017 31.7 19.5 108 415-533 63-171 (230)
97 PF03977 OAD_beta: Na+-transpo 77.8 1E+02 0.0022 32.8 26.2 118 160-279 4-134 (360)
98 PRK01658 holin-like protein; V 75.8 44 0.00096 30.2 11.0 98 155-256 4-109 (122)
99 PRK01821 hypothetical protein; 74.4 47 0.001 30.5 10.9 99 154-256 8-114 (133)
100 PRK10711 hypothetical protein; 74.3 59 0.0013 32.8 12.4 90 440-533 80-169 (231)
101 COG0679 Predicted permeases [G 73.8 1.2E+02 0.0026 31.7 32.3 137 394-533 167-307 (311)
102 PF05982 DUF897: Domain of unk 73.7 24 0.00053 37.2 9.9 94 183-278 183-278 (327)
103 KOG1650 Predicted K+/H+-antipo 73.5 42 0.00092 39.8 13.1 243 48-308 134-410 (769)
104 PRK04288 antiholin-like protei 68.9 1.3E+02 0.0029 30.2 18.6 90 440-533 85-174 (232)
105 PF03547 Mem_trans: Membrane t 68.9 77 0.0017 33.8 13.0 132 395-529 244-384 (385)
106 COG1380 Putative effector of m 67.8 55 0.0012 29.9 9.7 97 155-255 5-109 (128)
107 TIGR03136 malonate_biotin Na+- 67.2 1.7E+02 0.0036 31.6 14.3 75 425-500 105-179 (399)
108 COG3329 Predicted permease [Ge 64.4 1E+02 0.0022 32.4 11.8 137 394-533 16-158 (372)
109 TIGR03136 malonate_biotin Na+- 63.3 2.2E+02 0.0048 30.7 24.8 119 159-279 23-171 (399)
110 TIGR00840 b_cpa1 sodium/hydrog 62.5 1.5E+02 0.0032 33.9 14.1 74 423-496 68-150 (559)
111 PRK04125 murein hydrolase regu 53.0 1.9E+02 0.0042 26.8 13.0 43 417-459 55-102 (141)
112 TIGR00793 kdgT 2-keto-3-deoxyg 51.9 1.1E+02 0.0023 32.2 9.6 72 184-260 175-248 (314)
113 TIGR01625 YidE_YbjL_dupl AspT/ 49.9 76 0.0016 29.9 7.7 85 395-479 22-116 (154)
114 TIGR01109 Na_pump_decarbB sodi 49.3 1.5E+02 0.0032 31.5 10.2 74 424-499 62-141 (354)
115 COG3329 Predicted permease [Ge 48.8 3.2E+02 0.007 28.8 12.4 125 182-309 18-145 (372)
116 PRK14854 nhaA pH-dependent sod 48.1 1.8E+02 0.0038 31.6 10.9 23 423-445 60-82 (383)
117 PF02040 ArsB: Arsenical pump 47.5 4.3E+02 0.0092 29.2 17.4 37 278-314 116-152 (423)
118 TIGR00841 bass bile acid trans 44.9 2.8E+02 0.0061 28.6 11.8 100 428-533 14-120 (286)
119 PRK14853 nhaA pH-dependent sod 42.0 4.6E+02 0.0099 29.0 13.2 22 423-444 66-87 (423)
120 PF03390 2HCT: 2-hydroxycarbox 42.0 5.1E+02 0.011 28.5 17.4 143 391-533 57-213 (414)
121 PF13593 DUF4137: SBF-like CPA 40.6 4.5E+02 0.0098 27.5 13.2 49 397-446 7-55 (313)
122 COG3263 NhaP-type Na+/H+ and K 39.7 3.1E+02 0.0066 30.5 11.1 106 385-490 22-131 (574)
123 COG2985 Predicted permease [Ge 39.5 1.2E+02 0.0027 33.8 8.2 104 182-290 397-511 (544)
124 TIGR00659 conserved hypothetic 38.9 4.2E+02 0.0091 26.6 19.2 90 440-533 79-168 (226)
125 PRK14855 nhaA pH-dependent sod 37.5 2.2E+02 0.0047 31.4 9.8 23 423-445 67-89 (423)
126 PRK01821 hypothetical protein; 37.1 3.3E+02 0.0072 25.0 13.1 42 418-459 58-104 (133)
127 PF04172 LrgB: LrgB-like famil 36.8 4.4E+02 0.0095 26.2 20.1 89 441-533 70-158 (215)
128 TIGR01109 Na_pump_decarbB sodi 35.4 5.8E+02 0.012 27.2 22.2 105 170-276 12-131 (354)
129 COG3493 CitS Na+/citrate sympo 32.5 6.9E+02 0.015 27.3 14.0 106 169-276 277-393 (438)
130 PF11299 DUF3100: Protein of u 32.1 3.2E+02 0.0069 27.6 9.1 130 186-320 27-164 (241)
131 KOG3826 Na+/H+ antiporter [Ino 31.9 42 0.00092 33.7 3.0 129 160-288 101-238 (252)
132 PRK14856 nhaA pH-dependent sod 31.3 3E+02 0.0065 30.5 9.6 23 423-445 72-94 (438)
133 PF00873 ACR_tran: AcrB/AcrD/A 30.4 1E+03 0.022 29.3 15.3 42 234-276 354-395 (1021)
134 COG1346 LrgB Putative effector 28.1 6.4E+02 0.014 25.4 16.4 104 159-264 9-119 (230)
135 PRK09561 nhaA pH-dependent sod 27.9 4.4E+02 0.0096 28.7 10.1 23 423-445 63-85 (388)
136 PRK15477 oxaloacetate decarbox 27.7 1.5E+02 0.0031 32.1 6.2 126 424-554 133-265 (433)
137 PRK15476 oxaloacetate decarbox 27.6 1.5E+02 0.0032 32.1 6.2 126 424-554 133-265 (433)
138 PRK10263 DNA translocase FtsK; 27.5 1.1E+03 0.024 29.9 14.4 36 393-439 62-97 (1355)
139 PRK09560 nhaA pH-dependent sod 27.5 4.2E+02 0.0091 28.9 9.8 23 423-445 63-85 (389)
140 PRK15475 oxaloacetate decarbox 27.4 1.5E+02 0.0032 32.0 6.2 126 424-554 133-265 (433)
141 PF03812 KdgT: 2-keto-3-deoxyg 25.3 2.6E+02 0.0055 29.5 7.5 72 184-259 175-247 (314)
142 PRK09371 gas vesicle synthesis 25.1 46 0.00099 26.7 1.6 18 50-67 4-21 (68)
143 COG0385 Predicted Na+-dependen 24.6 8.3E+02 0.018 25.9 11.2 107 420-533 36-150 (319)
144 COG5505 Predicted integral mem 24.4 8.7E+02 0.019 25.8 27.8 117 402-527 255-371 (384)
145 PRK01658 holin-like protein; V 23.0 5.6E+02 0.012 23.1 13.1 47 418-464 53-104 (122)
146 TIGR00773 NhaA Na+/H+ antiport 22.0 6.6E+02 0.014 27.2 10.1 23 423-445 56-78 (373)
147 PF01032 FecCD: FecCD transpor 20.5 9.9E+02 0.021 25.0 14.2 105 173-285 36-150 (311)
148 CHL00118 atpG ATP synthase CF0 20.4 2.5E+02 0.0054 26.2 5.9 31 337-367 25-55 (156)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=3.1e-59 Score=539.81 Aligned_cols=425 Identities=18% Similarity=0.308 Sum_probs=362.8
Q ss_pred eecCCCeeeecCCCCC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCCCCc-------
Q 047751 132 IDRKDNVFIISNPKSK-YPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSE------- 203 (580)
Q Consensus 132 id~~~~~~~~~~p~~~-~p~l~~d~~li~~l~lil~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~i~~------- 203 (580)
..+++|+|+++||+++ +|. ++.|++++++++++++++++|+|||+++|||++|+++||+++|.++.
T Consensus 24 ~~~s~g~~~g~~pl~~~l~~------~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp 97 (832)
T PLN03159 24 MITTNGIWQGDNPLDFSLPL------FILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFP 97 (832)
T ss_pred CccCCcccccCCcccchHHH------HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCC
Confidence 4688999999999998 776 57999999999999999999999999999999999999999998742
Q ss_pred ---hHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHH
Q 047751 204 ---MVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCGGK------PSEGVFVGVLL 274 (580)
Q Consensus 204 ---~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~~ll~~~l~~~~~~~lg~~------~~~al~ig~~l 274 (580)
.+.+++++++|++++||.+|+|+|++.+|+.+|+++.+++.++++|++++..++++++.. ....+++|.++
T Consensus 98 ~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~al 177 (832)
T PLN03159 98 LRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVAL 177 (832)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 347999999999999999999999999999999999999999999998887766554321 24568999999
Q ss_pred hhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 047751 275 SMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRT 354 (580)
Q Consensus 275 s~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~ 354 (580)
|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++..+...+.. . ....+.++..++++++++++.|+
T Consensus 178 S~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~--~-~~~l~~~l~~~~f~~~~~~v~r~ 254 (832)
T PLN03159 178 SVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDST--S-LASLWVLLSSVAFVLFCFYVVRP 254 (832)
T ss_pred HHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--c-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887665443221 1 12234455566777777888888
Q ss_pred HHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCchhhHHHhHHhH-HHHHHHHHHH
Q 047751 355 CVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPI-RNFFAALFLA 433 (580)
Q Consensus 355 ~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~~~~~~l~~~l~~i-~~~f~plFFv 433 (580)
+++|+.++.++. ...+|.++.++++++++++++++.+|+|+++|||++|+++|+.+.++++.++++++ .++|+|+||+
T Consensus 255 ~~~~~~r~~~~~-~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv 333 (832)
T PLN03159 255 GIWWIIRRTPEG-ETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFA 333 (832)
T ss_pred HHHHHHHhCcCC-CCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888775432 23467777888888899999999999999999999999999988889999999998 6899999999
Q ss_pred HHhhhhhHHhHhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHH
Q 047751 434 SIGMLIHVHFLWNH--VDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKL 511 (580)
Q Consensus 434 ~iGl~id~~~l~~~--~~~~l~~vl~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~ 511 (580)
++|+++|+..+... |.++++++++.+++|+++++++++++|+|+|+++.+|++|++||+++++++++|.+.|+++++.
T Consensus 334 ~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~ 413 (832)
T PLN03159 334 ISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDES 413 (832)
T ss_pred HhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchh
Confidence 99999999887543 3344555667789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHhh-hhhhhhhhhhhccCCCCCcccCCCCCCcCCCCCCceeeeecCCCC
Q 047751 512 YLLLLGTT-ALSLVTTPLLFKLI-PAVVNLGVLLRWFSPDSPIEIGYKGDSLRADSAKRITVMVQGSHH 578 (580)
Q Consensus 512 ~~~lv~~v-llS~l~~Pll~~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (580)
|+++++++ ++|.+++|++.++| |+++|..+-.| ..++.+++++.|++.|+|+++|
T Consensus 414 f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r------------~i~~~~~~~elriL~cv~~~~~ 470 (832)
T PLN03159 414 FAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRR------------TIQRSKHDAELRMLVCVHTPRN 470 (832)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCHHhhhcccccc------------ccccCCCCCceeEEEEeccCCc
Confidence 99998765 67999999999999 77655422111 1133456677899999999986
No 2
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=8.6e-53 Score=474.37 Aligned_cols=379 Identities=26% Similarity=0.408 Sum_probs=339.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhHHH
Q 047751 153 LDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLR 232 (580)
Q Consensus 153 ~d~~li~~l~lil~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~i~~~~~le~la~lGli~llF~~GLeld~~~l~ 232 (580)
.|+.++.++.+++..+.++..++||+|+|+++|||++|+++||+++|++++.+.++.++++|+++++|.+|+|+|++++|
T Consensus 2 ~~~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~ 81 (621)
T PRK03562 2 MDSHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLW 81 (621)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence 35678999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHH
Q 047751 233 VVRAVAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVG 312 (580)
Q Consensus 233 ~~~~~av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~ 312 (580)
+.+|+++..+..++++++++++.+.+++|.++..++++|.+++.||++++.++++|++..++++||.+++.+++||++++
T Consensus 82 ~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i 161 (621)
T PRK03562 82 KLRRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAI 161 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHh
Q 047751 313 LLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKL 392 (580)
Q Consensus 313 lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~l 392 (580)
+++++++.+...... .+....+...+..++++++.++++|++.+++++|+.+. +.+|.+...++.++++++++++.+
T Consensus 162 ~ll~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~--~~~e~~~~~~l~lv~~~a~la~~~ 238 (621)
T PRK03562 162 PLVAMIPLLAASGAS-TTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS--GLREVFTAVALFLVFGFGLLMEEV 238 (621)
T ss_pred HHHHHHHHHccCCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHh
Confidence 999888776543211 01112222333334445555667888889988888763 357888888888899999999999
Q ss_pred CchHHHHHHHHHHHhcCCCchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047751 393 GLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKG 472 (580)
Q Consensus 393 Gls~~lGaFvaGl~l~~~~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~ 472 (580)
|+|+.+|||++|+++++.++++++++++++++++|+|+||+++|+++|+..+...++.++.++++.+++|++++++.+++
T Consensus 239 Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~ 318 (621)
T PRK03562 239 GLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP 318 (621)
T ss_pred CccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887776666666677899999999999999
Q ss_pred cCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047751 473 FRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIP 534 (580)
Q Consensus 473 ~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~vllS~l~~Pll~~l~p 534 (580)
+|+++++++.+|+.|+|+|||++++++.+.+.|+++++.|+.++.++++|.+++|++.+++.
T Consensus 319 ~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~ 380 (621)
T PRK03562 319 LGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLD 380 (621)
T ss_pred hCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999998873
No 3
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=8.8e-51 Score=457.15 Aligned_cols=372 Identities=31% Similarity=0.448 Sum_probs=331.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhh
Q 047751 157 LISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRA 236 (580)
Q Consensus 157 li~~l~lil~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~i~~~~~le~la~lGli~llF~~GLeld~~~l~~~~~ 236 (580)
++.++.+++..+.+.+++++|+|+|+++||+++|+++||+++|.+++.+.++.++++|+++++|.+|+|+|++++|+.++
T Consensus 6 ~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~ 85 (601)
T PRK03659 6 LLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRR 85 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 047751 237 VAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFA 316 (580)
Q Consensus 237 ~av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~llla 316 (580)
+++.++..++++|+++++.+.+++|.++..++++|.+++.||++++.++|+|++..+++.||++++.+++||+.++++++
T Consensus 86 ~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di~~i~ll~ 165 (601)
T PRK03659 86 SIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALA 165 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877777777899999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhCchH
Q 047751 317 LLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSL 396 (580)
Q Consensus 317 l~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~ 396 (580)
+.+.+.+.......+ ....... +.++...+++|++.+++++++.+. +.+|.+...++.++++++++++.+|+|+
T Consensus 166 l~~~l~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~~l~~vl~~a~l~~~~Gls~ 239 (601)
T PRK03659 166 LVPLLAGSADEHFDW---MKIGMKV-LAFAGMLIGGRYLLRPLFRFIAAS--GVREVFTAAALLLVLGSALFMDALGLSM 239 (601)
T ss_pred HHHHHhcCCCcchHH---HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHhCccH
Confidence 887665432210011 1112222 223344556788888888887653 3578888888888999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 047751 397 ELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYS 476 (580)
Q Consensus 397 ~lGaFvaGl~l~~~~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~~~~~ 476 (580)
++|||++|+++++.+.++++++++++++++|+|+||+++|+++|+..+...|..++.+++..+++|++++++.++++|++
T Consensus 240 ~LGAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~~g~~ 319 (601)
T PRK03659 240 ALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARLYGLR 319 (601)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999887777666667778899999999999999999
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047751 477 NKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIP 534 (580)
Q Consensus 477 ~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~vllS~l~~Pll~~l~p 534 (580)
+++++.+|++|+|+|||++++++.+.+.|+++++.|+.++.++++|.+++|++.+.+.
T Consensus 320 ~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~~ 377 (601)
T PRK03659 320 SSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLID 377 (601)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999999999999999999873
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=2e-50 Score=452.06 Aligned_cols=376 Identities=32% Similarity=0.518 Sum_probs=329.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhHHHHhh
Q 047751 156 RLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVR 235 (580)
Q Consensus 156 ~li~~l~lil~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~i~~~~~le~la~lGli~llF~~GLeld~~~l~~~~ 235 (580)
.++..+.++++.+.+++.+++|+|+|+++|||++|+++||+++|.+++.+.++.++++|+++++|.+|+|+|++++|+.+
T Consensus 6 ~~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~ 85 (558)
T PRK10669 6 PLITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVK 85 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHh
Confidence 45678899999999999999999999999999999999999999988888999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 047751 236 AVAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLF 315 (580)
Q Consensus 236 ~~av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~lll 315 (580)
+..+..+..+++++++++.++.+.+|+++..++++|++++.||++++.++++|+|..++++||++++++++||+.+++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~l 165 (558)
T PRK10669 86 SIAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTL 165 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877788889999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhcC--CCcch-h--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHH-H
Q 047751 316 ALLPVLGGS--SGVLQ-G--VISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWC-S 389 (580)
Q Consensus 316 al~~~l~~~--~~~~~-~--~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~l-a 389 (580)
+++..+... ++..+ . .....+.+...++++++..+++|+..+|+.++..+. +.+|.+.+.++++++++++. +
T Consensus 166 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~e~~~l~~l~~~l~~a~~~~ 243 (558)
T PRK10669 166 VLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAAT--GSRELFTLSVLALALGIAFGAV 243 (558)
T ss_pred HHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHH
Confidence 877655431 11100 0 112233344555666777888899999998887653 35788777778888877764 6
Q ss_pred HHhCchHHHHHHHHHHHhcCCCchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047751 390 DKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATV 469 (580)
Q Consensus 390 e~lGls~~lGaFvaGl~l~~~~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~ 469 (580)
+.+|+|+++|||++|+++++.+.++++.+...+++++|.|+||+++|+++|+..+++.+..++.++++.+++|++++++.
T Consensus 244 ~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~ 323 (558)
T PRK10669 244 ELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFL 323 (558)
T ss_pred HHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888888888899999999999999999999887666555566677889999999999
Q ss_pred HhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047751 470 IKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI 533 (580)
Q Consensus 470 ~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~vllS~l~~Pll~~l~ 533 (580)
++++|+++|+++.+|+.|+||||+++++++.+.+.|+++++.|..++.++++|.+++|++.+..
T Consensus 324 ~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~ 387 (558)
T PRK10669 324 VRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLL 387 (558)
T ss_pred HHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998875
No 5
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-48 Score=415.13 Aligned_cols=372 Identities=30% Similarity=0.483 Sum_probs=322.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCC-CCchHHHHHHHHHHHHHHHHHHhhcCChhHHHHh
Q 047751 156 RLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSF-VSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVV 234 (580)
Q Consensus 156 ~li~~l~lil~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~-i~~~~~le~la~lGli~llF~~GLeld~~~l~~~ 234 (580)
..+.++.+++..+.+.+++++|+|+|+++||+++|+++||.+++. .++.+.++.++|+|++++||.+|+|+|++++|+.
T Consensus 6 ~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~ 85 (397)
T COG0475 6 LILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKV 85 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHh
Confidence 357899999999999999999999999999999999999966554 4567899999999999999999999999999999
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHH
Q 047751 235 RAV-AILGGLLQIFLFMCLCGIIAS-LCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVG 312 (580)
Q Consensus 235 ~~~-av~ia~~~~ll~~~l~~~~~~-~lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~ 312 (580)
+|+ +...+..++..|+.++....+ .+|.++..++++|.+++.||+++++++++|+|+.+++.||.+++++++||+.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i 165 (397)
T COG0475 86 GRSVGLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAI 165 (397)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 999 777788887777766654443 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHh
Q 047751 313 LLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKL 392 (580)
Q Consensus 313 lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~l 392 (580)
+++++.+.+.++++.. ............++.++....+|++.+++.|+..+. +.+|.....++++++..++++|.+
T Consensus 166 ~lLai~~~l~~~g~~~--~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~--~~~e~~~~~~l~i~l~~a~l~e~~ 241 (397)
T COG0475 166 LLLAIVPALAGGGSGS--VGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT--ESSELFILFVLLLVLGAAYLAELL 241 (397)
T ss_pred HHHHHHHHHccCCCcc--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998887543321 111344555666777777777899999999998764 457888889999999999999999
Q ss_pred CchHHHHHHHHHHHhcCCCch-hhHHHhHHhHHH-HHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047751 393 GLSLELGSFAAGVMISTTDLA-QHTLEQVEPIRN-FFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVI 470 (580)
Q Consensus 393 Gls~~lGaFvaGl~l~~~~~~-~~l~~~l~~i~~-~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~ 470 (580)
|+|+++|||+||+++++.+.+ ++++++++++++ +|.|+||+++|+++|++.+..++...+..+.+..++|.+++++.+
T Consensus 242 gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~ 321 (397)
T COG0475 242 GLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAA 321 (397)
T ss_pred ChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888 799999999988 999999999999999999998887777888888999999999999
Q ss_pred hhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 047751 471 KGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKL 532 (580)
Q Consensus 471 ~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~vllS~l~~Pll~~l 532 (580)
+..|++.|++...|+.+.++||+++++++.+.. +.++++.+...+..+.+++.+.|.+.+.
T Consensus 322 ~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~ 382 (397)
T COG0475 322 RLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPI 382 (397)
T ss_pred HHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998877 5677777777766555555544444333
No 6
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-47 Score=435.97 Aligned_cols=426 Identities=22% Similarity=0.337 Sum_probs=364.9
Q ss_pred eeecCCCeeeecCCCCC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCCCC-------
Q 047751 131 LIDRKDNVFIISNPKSK-YPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVS------- 202 (580)
Q Consensus 131 lid~~~~~~~~~~p~~~-~p~l~~d~~li~~l~lil~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~i~------- 202 (580)
....++|.|.++||+++ +|+ ++.|++++++++++++.++||+|||++++++++|+++||+.+|.++
T Consensus 3 ~~~~~~g~~~~~~~~~~~lpl------~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f 76 (769)
T KOG1650|consen 3 VKATSNGVFPGVNPLKYALPL------LLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIF 76 (769)
T ss_pred CccccCCcccCCCccccccHH------HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhccc
Confidence 34578899999999999 888 5799999999999999999999999999999999999999998763
Q ss_pred ---chHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcC--C---------ChHHHH
Q 047751 203 ---EMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCG--G---------KPSEGV 268 (580)
Q Consensus 203 ---~~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~~ll~~~l~~~~~~~lg--~---------~~~~al 268 (580)
....+++++.+|..+++|+.|+|+|.+.+|+.+|++..+++.++++|+..+..+..... . .+.+-.
T Consensus 77 ~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (769)
T KOG1650|consen 77 PKSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEIL 156 (769)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHH
Confidence 34689999999999999999999999999999999999999999999988776654431 1 122678
Q ss_pred HHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 047751 269 FVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAIL 348 (580)
Q Consensus 269 ~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~ 348 (580)
++..++|.||+|+++++|.|+|+++++.||+++++++++|+++|.++++...+...... ......+.+...+++++++
T Consensus 157 ~~~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ 234 (769)
T KOG1650|consen 157 FILSAQSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKL--SPLRSVWDLVLVIGFVLFL 234 (769)
T ss_pred HHHHHhhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCC--cchHHHHHHHHHHHHHHhe
Confidence 89999999999999999999999999999999999999999999988877776654331 1122245566677888888
Q ss_pred HHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHhcCC-CchhhHHHhHHhH-HH
Q 047751 349 TILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLG-LSLELGSFAAGVMISTT-DLAQHTLEQVEPI-RN 425 (580)
Q Consensus 349 ~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lG-ls~~lGaFvaGl~l~~~-~~~~~l~~~l~~i-~~ 425 (580)
.++.|+.+.|+.|+.+. ..+.++.|....+..++.++.+++.++ .|+.+|+|+.|+++|++ |++..+.+|+|.+ .+
T Consensus 235 ~~v~~p~~~wi~kr~pe-~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~ 313 (769)
T KOG1650|consen 235 FFVVRPLMKWIIKRTPE-GKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSG 313 (769)
T ss_pred eeehhhhHHHHhhcCCC-CCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHH
Confidence 88899999998887332 233567777888888889999999988 89999999999999986 7899999999998 58
Q ss_pred HHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCC
Q 047751 426 FFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLH 505 (580)
Q Consensus 426 ~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~g 505 (580)
+|+|+||+..|++.|+..+.. |......+...+++|++++..++.++|+|+||++.+|.+|++||.++++..+.+.+.+
T Consensus 314 ~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~ 392 (769)
T KOG1650|consen 314 LLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRK 392 (769)
T ss_pred HHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999999999877 6666666778899999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHH-HHHHHHHHHHhh-hhhhhhhhhhhccCCCCCcccCCCCCCcCCCCCCceeeeecCCCC
Q 047751 506 LVEGKLYLLLLGTTAL-SLVTTPLLFKLI-PAVVNLGVLLRWFSPDSPIEIGYKGDSLRADSAKRITVMVQGSHH 578 (580)
Q Consensus 506 ii~~~~~~~lv~~vll-S~l~~Pll~~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (580)
+++++.|+++++++++ |.+++|++..+| |.++|.++ + +..-+.+++..+.|++.|+++++|
T Consensus 393 ~~~~~~f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y-----------~-~~~i~~~~~~~~Lril~cl~~~~~ 455 (769)
T KOG1650|consen 393 ILSDEGFTVMVLMALVSTFITPPLLMFLYDPTRKYHGY-----------K-KRGIQHLKPNSELRILTCLHGPEN 455 (769)
T ss_pred CcccchHHHHHHHHHHHHhhHHHHHHHhcchhhhcCce-----------E-eehhhhcCCCCceEEEEEecCCCc
Confidence 9999999999986555 888999999999 77655541 1 122234446677899999999986
No 7
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-43 Score=350.56 Aligned_cols=380 Identities=35% Similarity=0.538 Sum_probs=342.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhHHH
Q 047751 153 LDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLR 232 (580)
Q Consensus 153 ~d~~li~~l~lil~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~i~~~~~le~la~lGli~llF~~GLeld~~~l~ 232 (580)
+|..++..+..-+..++++|.+++|+|+|+.+||+++|++.||..-|++.+......++|+|++++||-+|++++.+.+.
T Consensus 3 h~tpli~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLL 82 (408)
T COG4651 3 HDTPLITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLL 82 (408)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHh
Confidence 34456788888899999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHH
Q 047751 233 VVRAVAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVG 312 (580)
Q Consensus 233 ~~~~~av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~ 312 (580)
.++..++..++.++.+....+..+.+.+|+++...+.+|.++|.+|+.+..|-++|++..+++.||++++..+++|+..+
T Consensus 83 avk~iAipgAl~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mV 162 (408)
T COG4651 83 AVKAIAIPGALAQIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMV 162 (408)
T ss_pred hHHHHhcchHHHHHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHH
Confidence 99888999999999888888888899999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhcCCCc----ch-hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHH
Q 047751 313 LLFALLPVLGGSSGV----LQ-GVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAW 387 (580)
Q Consensus 313 lllal~~~l~~~~~~----~~-~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~ 387 (580)
+.+.+.+++++.-+. .. -...+...+.+++.|+.+..+++|.+.||++++... .+++|.+.+..+++++..++
T Consensus 163 l~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~--tGsrElf~L~vla~ALgVa~ 240 (408)
T COG4651 163 LALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAA--TGSRELFTLAVLAIALGVAF 240 (408)
T ss_pred HHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHHHhh
Confidence 888888877653211 11 123445566678899999999999999999998876 46799999999988887766
Q ss_pred H-HHHhCchHHHHHHHHHHHhcCCCchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 047751 388 C-SDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVV 466 (580)
Q Consensus 388 l-ae~lGls~~lGaFvaGl~l~~~~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~ 466 (580)
- ++.+|.|..+|||.+|+++.+++..++..+..-|++|.|..+||+++||..|+..+.++...++...++.+.+|-+..
T Consensus 241 Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl~vlatllii~~gKs~aa 320 (408)
T COG4651 241 GAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLLIILFGKSVAA 320 (408)
T ss_pred ccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcchHHHHHHHHHHHhhhHHHH
Confidence 4 568899999999999999999999999999999999999999999999999999988777777777788889999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047751 467 ATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIP 534 (580)
Q Consensus 467 ~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~vllS~l~~Pll~~l~p 534 (580)
+...+.+|+|.|+++.++.+++|.|||+++++..+.+.+++++.--..++...++|.+..|+.+....
T Consensus 321 f~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~~d 388 (408)
T COG4651 321 FFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALLD 388 (408)
T ss_pred HHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999977777777788889999999998864
No 8
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=9.4e-39 Score=357.97 Aligned_cols=369 Identities=17% Similarity=0.162 Sum_probs=296.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCCC--CchHHHHHHHHHHHHHHHHHHhhcCChhHHHH
Q 047751 156 RLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFV--SEMVQVETVAQFGVIFLLFALGLEFSTAKLRV 233 (580)
Q Consensus 156 ~li~~l~lil~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~i--~~~~~le~la~lGli~llF~~GLeld~~~l~~ 233 (580)
.++++++++++.+.+++.+++|+|+|.+++|+++|+++||+++|.+ ++.+..+.++++|+++++|..|+|+|++.+|+
T Consensus 6 ~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~ 85 (562)
T PRK05326 6 SLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRP 85 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHH
Confidence 4678899999999999999999999999999999999999999965 34567899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-HHHhcCCChHHHHHHHHHHhhccHHHHHHHHhhhcc-cCcchHHHHHHHHHHHHHHH
Q 047751 234 VRAVAILGGLLQIFLFMCLCGI-IASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNS-ISALHGQVTIGTLILQDCAV 311 (580)
Q Consensus 234 ~~~~av~ia~~~~ll~~~l~~~-~~~~lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~~~-~~s~~g~l~ls~avl~Dv~~ 311 (580)
.+++++.+++.++++|+++.+. ..+++|.++.+++++|+++++||++++.++++|.++ .+++.++++.+++.+||..+
T Consensus 86 ~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~a 165 (562)
T PRK05326 86 ALGPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPMA 165 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHHH
Confidence 9999999999999999888655 456789999999999999999999999999999994 78999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHH
Q 047751 312 GLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDK 391 (580)
Q Consensus 312 ~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~ 391 (580)
++++.++..+...+....++......+.. +++.++..++.++...|+.++.+. ..++.+..++++.+++++++++.
T Consensus 166 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~G~~~g~l~~~l~~~~~~---~~~~~~~i~~l~~~l~~~~~a~~ 241 (562)
T PRK05326 166 VFLTITLIELITGGETGLSWGFLLLFLQQ-FGLGALIGLLGGWLLVQLLNRIAL---PAEGLYPILVLAGALLIFALTAA 241 (562)
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccC---chhhHHHHHHHHHHHHHHHHHHH
Confidence 88777665443322211112111222222 233333344445666777666532 13456777888899999999999
Q ss_pred hCchHHHHHHHHHHHhcCCCc--hhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHH-HHHHHHHHHHHHHHHHH
Q 047751 392 LGLSLELGSFAAGVMISTTDL--AQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDIL-LAAVLLVIVVKTVVVAT 468 (580)
Q Consensus 392 lGls~~lGaFvaGl~l~~~~~--~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~-l~~vl~~~~~K~l~~~l 468 (580)
+|.|+.+|+|++|+++++.+. .+++.+..+.+.+++.|+||+++|+.+|++.+.+.+... +..+++.+++|++++++
T Consensus 242 lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l 321 (562)
T PRK05326 242 LGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFL 321 (562)
T ss_pred HCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998743 334555556678899999999999999999887554433 33345567899999999
Q ss_pred HHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHHHHHHHH
Q 047751 469 VIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEG-KLYLLLLGTTALSLVTTPLL 529 (580)
Q Consensus 469 ~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~-~~~~~lv~~vllS~l~~Pll 529 (580)
..+.+++++||++.+|+. ++||+++++++..+.+.|+.+. ..|.+...++++|.++.+..
T Consensus 322 ~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~t 382 (562)
T PRK05326 322 SLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTT 382 (562)
T ss_pred HHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhh
Confidence 999999999999999995 8999999999999999998864 55666666677777665443
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=1.3e-36 Score=311.20 Aligned_cols=271 Identities=34% Similarity=0.550 Sum_probs=233.4
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHH
Q 047751 166 VSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQ 245 (580)
Q Consensus 166 ~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~i~~~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~ 245 (580)
+.+.+.+.++||+|+|.+++|+++|+++||+++|.+++.+.++.++++|+++++|.+|+|+|++.+|+.+|++..+++.+
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~ 81 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQ 81 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 35777899999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHHhcCCChHHHHHHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047751 246 IFLF-MCLCGIIASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFALLPVLGGS 324 (580)
Q Consensus 246 ~ll~-~~l~~~~~~~lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~lllal~~~l~~~ 324 (580)
+++| +.++....+++|.++.+++++|++++.||++++.++++|+|..+++.|+++++++++||+.+++++++.......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~ 161 (273)
T TIGR00932 82 VLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATS 161 (273)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999 555555677889999999999999999999999999999999999999999999999999999998887665432
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Q 047751 325 SGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAG 404 (580)
Q Consensus 325 ~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~~lGaFvaG 404 (580)
... +...........+++.++..++.++..+|+.|+..+. +.+|.+...++.+++..++++|.+|.|+.+|+|++|
T Consensus 162 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~la~~~g~s~~lgaf~aG 237 (273)
T TIGR00932 162 AST--EHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAEL--RPSELFTAGSLLLMFGSAYFADLLGLSMALGAFLAG 237 (273)
T ss_pred CCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 211 1122233333444455555677788888888876653 235777788888889999999999999999999999
Q ss_pred HHhcCCCchhhHHHhHHhHHHHHHHHHHHHHhhhhh
Q 047751 405 VMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIH 440 (580)
Q Consensus 405 l~l~~~~~~~~l~~~l~~i~~~f~plFFv~iGl~id 440 (580)
+++++.+.++++.++++++.++|.|+||+++|+++|
T Consensus 238 l~~~~~~~~~~l~~~l~~~~~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 238 VVLSESEYRHKLESDLEPIGGVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHcCCchHHHHHHHHHhHHHHHHHHHHHHhCccCC
Confidence 999998888889999999999999999999999876
No 10
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=1.3e-41 Score=363.38 Aligned_cols=365 Identities=27% Similarity=0.450 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCCCCch-HHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHH
Q 047751 163 VVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSEM-VQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILG 241 (580)
Q Consensus 163 lil~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~i~~~-~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~i 241 (580)
++++.+.+.+.++||+++|.+++|+++|+++||.+++.+++. ...+.++++|+.+++|.+|+|+|.+.+|+.+++.+..
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~ 82 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALAL 82 (380)
T ss_dssp ---------------------------------------------S-SSHHHHS--SSHHHHTTGGGG------------
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 445567777778999999999999999999999999988776 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHH---hcCCChHHHHHHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHH
Q 047751 242 GLLQIFLFMCL-CGIIAS---LCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFAL 317 (580)
Q Consensus 242 a~~~~ll~~~l-~~~~~~---~lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~lllal 317 (580)
++.++++++++ +..+.+ ..|.++.+++++|.+++.||++++.++++|++..+++.++++++++++||+++++++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~ 162 (380)
T PF00999_consen 83 GLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSI 162 (380)
T ss_dssp -------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT--
T ss_pred ccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhhhhhh
Confidence 99999999888 444443 46889999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhCchHH
Q 047751 318 LPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLE 397 (580)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~~ 397 (580)
.......+.. .+..+... .....+...++..+..+|+.++..++..+.++.....+++.++..++++|.+|.|+.
T Consensus 163 ~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~ 237 (380)
T PF00999_consen 163 LISLAQASGQ----SSLGQLLL-SFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLAEILGLSGI 237 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhccccc----ccccchhc-chhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhcccccccccccc
Confidence 6555421111 11111111 112222233333445566666655543245677778889999999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhHHHhHHhHH-HHHHHHHHHHHhhhhhHHhHh---HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047751 398 LGSFAAGVMISTTDLAQHTLEQVEPIR-NFFAALFLASIGMLIHVHFLW---NHVDILLAAVLLVIVVKTVVVATVIKGF 473 (580)
Q Consensus 398 lGaFvaGl~l~~~~~~~~l~~~l~~i~-~~f~plFFv~iGl~id~~~l~---~~~~~~l~~vl~~~~~K~l~~~l~~~~~ 473 (580)
+|+|++|+++++.+.++++.|++++++ +++.|+||+++|+++|++.+. ..+...+.+.+...++|++++++.+++.
T Consensus 238 l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 317 (380)
T PF00999_consen 238 LGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRLF 317 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhhc
Confidence 999999999998888888999999997 899999999999999998883 3344445555666789999999999999
Q ss_pred CCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 047751 474 RYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKL 532 (580)
Q Consensus 474 ~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~vllS~l~~Pll~~l 532 (580)
|+++|+++.+|+++.+||+++++++..+.+.|+++++.+.+++.++++|.+++|...+.
T Consensus 318 ~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~ 376 (380)
T PF00999_consen 318 GIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSP 376 (380)
T ss_dssp -----HHHHTTTTSS--HHHHHHHHHHHHH-----------------------------
T ss_pred ccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988776654
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.97 E-value=1.4e-27 Score=268.02 Aligned_cols=342 Identities=11% Similarity=0.050 Sum_probs=252.8
Q ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCCCCchH------HHHHHHHHHHHHHHHHHhhcCChhHHHHhhh
Q 047751 163 VVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSEMV------QVETVAQFGVIFLLFALGLEFSTAKLRVVRA 236 (580)
Q Consensus 163 lil~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~i~~~~------~le~la~lGli~llF~~GLeld~~~l~~~~~ 236 (580)
++++++.+..++.+|+.+|..+.++++|+++||.++|.+++.. ....++++++++.+|.+|++++.+.+++.|+
T Consensus 21 ~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wr 100 (810)
T TIGR00844 21 FSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWV 100 (810)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHH
Confidence 3344555555666699999999999999999999998876432 3333999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHhhccHHHHHHHHhhh--cccCcchHHHHHHHHHHHHHHHH
Q 047751 237 VAILGGLLQIFLFMCLCGIIASL--CGGKPSEGVFVGVLLSMSSTAVVLKFLMER--NSISALHGQVTIGTLILQDCAVG 312 (580)
Q Consensus 237 ~av~ia~~~~ll~~~l~~~~~~~--lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~--~~~~s~~g~l~ls~avl~Dv~~~ 312 (580)
..+.+++.++.++++++++++++ .|.++..++++|+++++|+|.....+++.. ...+.++..++.+++.+||..++
T Consensus 101 sV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~rLR~lL~~ESGlNDGlAf 180 (810)
T TIGR00844 101 SVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPGHLRNLLSCESGCNDGLAF 180 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCChHHHhHHhhhhhcccHHHH
Confidence 99999999999888888877654 499999999999999999998888877632 13568889999999999999988
Q ss_pred HHHHHHHHHhc--C-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHH
Q 047751 313 LLFALLPVLGG--S-SGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCS 389 (580)
Q Consensus 313 lllal~~~l~~--~-~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~la 389 (580)
+++.+...+.. . .+.....+.....+..+++.++++++++ ++..|+.++..++.....+.+....++++++++.++
T Consensus 181 pfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG-~l~~~Ll~~l~rr~~i~~esfla~~LaLAli~~gla 259 (810)
T TIGR00844 181 PFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIG-YCGRKAIRFAEGKNIIDRESFLAFYLILALTCAGFG 259 (810)
T ss_pred HHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Confidence 77655543332 1 1111111112223333334444444444 467777777765433344556666777888889999
Q ss_pred HHhCchHHHHHHHHHHHhcCCCc-hhhH-HHhHHh-HHHHHHHHHHHHHhhhhhHHhHhH------HHHHHHHHHHHHHH
Q 047751 390 DKLGLSLELGSFAAGVMISTTDL-AQHT-LEQVEP-IRNFFAALFLASIGMLIHVHFLWN------HVDILLAAVLLVIV 460 (580)
Q Consensus 390 e~lGls~~lGaFvaGl~l~~~~~-~~~l-~~~l~~-i~~~f~plFFv~iGl~id~~~l~~------~~~~~l~~vl~~~~ 460 (580)
+.+|.++++++|+||+++++... .++. ...+.. +..++...+|+.+|+.+....+.. .|..+++.+++.++
T Consensus 260 ~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifV 339 (810)
T TIGR00844 260 SMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFL 339 (810)
T ss_pred HHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999998532 2211 122333 345888899999999998766532 23334455566678
Q ss_pred HHHHHHHHHHhhc--CCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCC
Q 047751 461 VKTVVVATVIKGF--RYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHL 506 (580)
Q Consensus 461 ~K~l~~~l~~~~~--~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gi 506 (580)
.|+.++++..... ..++||++++|| .++||..+++++..+.+.+.
T Consensus 340 rRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 340 RRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 8988888754443 468999999999 79999999999999987764
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.96 E-value=2.2e-25 Score=247.61 Aligned_cols=362 Identities=15% Similarity=0.126 Sum_probs=242.6
Q ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCC-CCchHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHH
Q 047751 163 VVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSF-VSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILG 241 (580)
Q Consensus 163 lil~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~-i~~~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~i 241 (580)
.+++.+.....+++|+++|.+++++++|+++||...+. ++.. -+.+..+++..++|..|+++|.+.+|++++....+
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~--~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~l 82 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLD--REIVLFLFLPPLLFEAAMNTDLRELRENFRPIALI 82 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCC--HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34445666678899999999999999999999865432 2222 23455689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047751 242 GLLQIFLFMCLCGIIAS-LCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFALLPV 320 (580)
Q Consensus 242 a~~~~ll~~~l~~~~~~-~lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~lllal~~~ 320 (580)
++.++++++++++...+ +.|.++..++++|+++++||++++.+++++.+ .+++..+++.+++.+||..+++++.+...
T Consensus 83 a~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESllND~~alvlf~~~~~ 161 (525)
T TIGR00831 83 AFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLLNDGAALVVFAIAVA 161 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhhcchHHHHHHHHHHH
Confidence 99999999888776554 67899999999999999999999999999976 47889999999999999999998887765
Q ss_pred HhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhCchHHHHH
Q 047751 321 LGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGS 400 (580)
Q Consensus 321 l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~~lGa 400 (580)
...+++..+........+...++.++++++++ ++..|+.++.. ..+.....+++++++++++++|.+|.|+++++
T Consensus 162 ~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g-~~~~~l~~~~~----~~~~~~~~l~l~~~~~~y~lAe~lg~SgilAv 236 (525)
T TIGR00831 162 VALGKGVFDPLNAALDFAVVCVGGIAAGLAVG-YLAYRLLRAKI----DDPLVEIALTILAPFAGFLLAERFHFSGVIAV 236 (525)
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 54322211111111122222223333333333 34444443311 12333456778888999999999999999999
Q ss_pred HHHHHHhcCCCc----hhhHHHhH----HhHHHHHHHHHHHHHhhhhhHHh--HhHH----HH---HH-----HHHHHHH
Q 047751 401 FAAGVMISTTDL----AQHTLEQV----EPIRNFFAALFLASIGMLIHVHF--LWNH----VD---IL-----LAAVLLV 458 (580)
Q Consensus 401 FvaGl~l~~~~~----~~~l~~~l----~~i~~~f~plFFv~iGl~id~~~--l~~~----~~---~~-----l~~vl~~ 458 (580)
|++|+++++... ..+...+. +.+..++.+++|+.+|++++... .+.. +. +. +.+....
T Consensus 237 v~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 316 (525)
T TIGR00831 237 VAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVM 316 (525)
T ss_pred HHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999997522 12222223 33456889999999999987421 1110 10 00 0111122
Q ss_pred HHHHHHHHHHHH--h-----hcCCChHHHHHHHHHHHhHHHHHHHHHHHH-Hh--CC-CCh-HH-----HHHHHHHHHHH
Q 047751 459 IVVKTVVVATVI--K-----GFRYSNKTSLLVGMSLAQIGEFAFVLLSRA-SN--LH-LVE-GK-----LYLLLLGTTAL 521 (580)
Q Consensus 459 ~~~K~l~~~l~~--~-----~~~~~~r~a~~lgl~L~~rG~~~lvla~~a-~~--~g-ii~-~~-----~~~~lv~~vll 521 (580)
...|++..+... + ..++++|+++.++| .+.||.++++++..- .. .| .+. ++ .+.+++.++++
T Consensus 317 ~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~~~vVl~Tllv 395 (525)
T TIGR00831 317 TYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELVFLAAGVILFSLLV 395 (525)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 344554332211 1 12467899999999 599999999887532 11 11 122 22 22233344555
Q ss_pred HHHHHHHHHHhh
Q 047751 522 SLVTTPLLFKLI 533 (580)
Q Consensus 522 S~l~~Pll~~l~ 533 (580)
..++.|.+.|..
T Consensus 396 qG~tlp~l~r~l 407 (525)
T TIGR00831 396 QGISLPIFVKRK 407 (525)
T ss_pred HHhhHHHHHHhc
Confidence 555666655554
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.1e-23 Score=228.27 Aligned_cols=374 Identities=18% Similarity=0.182 Sum_probs=280.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCCCCc--hHHHHHHHHHHHHHHHHHHhhcCChhHHHHh
Q 047751 157 LISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSE--MVQVETVAQFGVIFLLFALGLEFSTAKLRVV 234 (580)
Q Consensus 157 li~~l~lil~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~i~~--~~~le~la~lGli~llF~~GLeld~~~l~~~ 234 (580)
.+.+..+++..+.....+.++++.|.+..+++.|++.||.+++...+ ...-|.+..+++..++|..|+|+|.+.+|++
T Consensus 7 ~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~ 86 (429)
T COG0025 7 LLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRV 86 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHHHh
Confidence 46778888888999999999999999999999999999999887764 3345555599999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHH
Q 047751 235 RAVAILGGLLQIFLFMCLCGIIASLC--GGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVG 312 (580)
Q Consensus 235 ~~~av~ia~~~~ll~~~l~~~~~~~l--g~~~~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~ 312 (580)
++....+++..++++.+..+...+++ +.++..++.+|+++++|++.++.++.++.+ .+.++.+++.+++.+||..++
T Consensus 87 ~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gESl~ND~~gi 165 (429)
T COG0025 87 WRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEGESLLNDGVGI 165 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999988888877766 778889999999999999999999988865 689999999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHh
Q 047751 313 LLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKL 392 (580)
Q Consensus 313 lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~l 392 (580)
+++.+........+..+-.......+....+.++++.++ .+...|+.+++.++............+...+..+.++|.+
T Consensus 166 v~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~i-G~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~~~~a~~l 244 (429)
T COG0025 166 VLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLL-GYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLAEAL 244 (429)
T ss_pred HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 998877665543332211122223333333333343333 3466777777766432234455678889999999999999
Q ss_pred CchHHHHHHHHHHHhcCC----Cc--h-hhHHHhHHh-HHHHHHHHHHHHHhhhhhHHhHhHH-HHHHHHHHHHHHHHHH
Q 047751 393 GLSLELGSFAAGVMISTT----DL--A-QHTLEQVEP-IRNFFAALFLASIGMLIHVHFLWNH-VDILLAAVLLVIVVKT 463 (580)
Q Consensus 393 Gls~~lGaFvaGl~l~~~----~~--~-~~l~~~l~~-i~~~f~plFFv~iGl~id~~~l~~~-~~~~l~~vl~~~~~K~ 463 (580)
|.|+.++.+++|++..+. .. . +...+.+.. +..++.-+.|+..|++++....... +..++..+...+++|+
T Consensus 245 ~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~~~~v~R~ 324 (429)
T COG0025 245 GVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARP 324 (429)
T ss_pred CcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999988521 11 1 222233333 3558888899999999998877644 4556666778899999
Q ss_pred HHHHHHHhhcC------CChHHHHHHHHHHHhHHHHHHHHHHHHHhC-CCChHHHH-----HHHHHHHHHHHHHHHHHHH
Q 047751 464 VVVATVIKGFR------YSNKTSLLVGMSLAQIGEFAFVLLSRASNL-HLVEGKLY-----LLLLGTTALSLVTTPLLFK 531 (580)
Q Consensus 464 l~~~l~~~~~~------~~~r~a~~lgl~L~~rG~~~lvla~~a~~~-gii~~~~~-----~~lv~~vllS~l~~Pll~~ 531 (580)
+.++...+..+ .++|+++++++ -++||.++++++...... ....++.- .+++.++++..++.|.+.+
T Consensus 325 ~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl~v~g~t~~~l~~ 403 (429)
T COG0025 325 LWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILFSLLVQGLTLPPLAK 403 (429)
T ss_pred HHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999988743 78999999999 599999999887755422 11112332 3333344444455555555
Q ss_pred hh
Q 047751 532 LI 533 (580)
Q Consensus 532 l~ 533 (580)
..
T Consensus 404 ~~ 405 (429)
T COG0025 404 KL 405 (429)
T ss_pred Hh
Confidence 43
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.93 E-value=4.3e-23 Score=213.88 Aligned_cols=355 Identities=17% Similarity=0.233 Sum_probs=285.4
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCCCC--chHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHH
Q 047751 162 VVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVS--EMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAI 239 (580)
Q Consensus 162 ~lil~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~i~--~~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av 239 (580)
.+++..+.+...++.|+|.|..+-.+..|++.|--++|.++ +.+.-..++++++++++|..|+..+++.+|...++++
T Consensus 13 svlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~pal 92 (574)
T COG3263 13 SVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPAL 92 (574)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhH
Confidence 36666788888999999999999999999999999999664 5668899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHH-HHH
Q 047751 240 LGGLLQIFLFMCLCGII-ASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLL-FAL 317 (580)
Q Consensus 240 ~ia~~~~ll~~~l~~~~-~~~lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~ll-lal 317 (580)
..+.++++++..+.+.. .|.++.+|.+++++|+++..|+.+.+-.+|.+++ +|.+++.++.-++.-||-.++++ +++
T Consensus 93 sLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~stLEiESGtNDPmAvfLTitl 171 (574)
T COG3263 93 SLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVASTLEIESGSNDPMAVFLTITL 171 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhhEEeecCCCCceeeehhHHH
Confidence 99999999988887765 5788999999999999999999999999998887 48999999999999999877655 445
Q ss_pred HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhCchHH
Q 047751 318 LPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLE 397 (580)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~~ 397 (580)
+-..+...+..+ + ...-.++...++.++..+.+.++.-++.++++ -.+..|..++++..++.+.+++.+|-|++
T Consensus 172 ieli~~get~l~-~-~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~n----Ld~GL~pil~la~~Ll~fs~t~aiGGsG~ 245 (574)
T COG3263 172 IELIAGGETNLS-W-GFLLGFLQQFGLGLLLGLGGGKLLLQLINRIN----LDSGLYPILALAGGLLIFSLTGAIGGSGI 245 (574)
T ss_pred HHHHhccccccC-H-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc----cccchhHHHHHHHHHHHHHHHHHhcCccc
Confidence 444444322221 1 11111333344444444445455555555542 23567888899999999999999999999
Q ss_pred HHHHHHHHHhcCCCc--hhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHH-HHHHHHHHHHHHHHHHHHHHHhhcC
Q 047751 398 LGSFAAGVMISTTDL--AQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVD-ILLAAVLLVIVVKTVVVATVIKGFR 474 (580)
Q Consensus 398 lGaFvaGl~l~~~~~--~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~-~~l~~vl~~~~~K~l~~~l~~~~~~ 474 (580)
+..+++|+.+.|.|. ++.+.+..+.+.++...+.|...|+.++++.++.... .++..+...++.|++++|+...-++
T Consensus 246 LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifvaRP~aV~l~l~Pfr 325 (574)
T COG3263 246 LAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFVARPLAVFLGLIPFR 325 (574)
T ss_pred HHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHHHhHHHHHHhhcccc
Confidence 999999999999865 4556777888999999999999999999999886543 3455566778999999999999999
Q ss_pred CChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHH-HHHHHHHH
Q 047751 475 YSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLL-GTTALSLV 524 (580)
Q Consensus 475 ~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv-~~vllS~l 524 (580)
+++||+++++| .+-||.++++++....-.|.-+.++|--+. +++++|.+
T Consensus 326 f~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSll 375 (574)
T COG3263 326 FNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLL 375 (574)
T ss_pred cCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHH
Confidence 99999999999 699999999999999988876655443333 34444554
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.91 E-value=1.7e-21 Score=216.97 Aligned_cols=335 Identities=12% Similarity=0.124 Sum_probs=231.9
Q ss_pred HHHHHHHHHHHHHHHH-hc-CCcHHHHHHHHHHhhCcCCCCC--CCc-hHHHHHHHHHHHHHHHHHHhhcCChhHHHHhh
Q 047751 161 LVVVIVSATCGGIAFA-CA-GQPVITGYLLAGSVIGPGGFSF--VSE-MVQVETVAQFGVIFLLFALGLEFSTAKLRVVR 235 (580)
Q Consensus 161 l~lil~~a~l~~~l~~-rl-~lP~ivg~IlaGilLGPs~Lg~--i~~-~~~le~la~lGli~llF~~GLeld~~~l~~~~ 235 (580)
++++...+.+...+.. +. ++|..+..++.|+++|+...+. .+. .-.-+.+-.+.+..++|..|.++|.+.++++.
T Consensus 14 ~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~ 93 (559)
T TIGR00840 14 WILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENL 93 (559)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3333344555545454 44 5999999999999999753221 211 11345666678889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh---------cCCChHHHHHHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHH
Q 047751 236 AVAILGGLLQIFLFMCLCGIIASL---------CGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLIL 306 (580)
Q Consensus 236 ~~av~ia~~~~ll~~~l~~~~~~~---------lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl 306 (580)
+..+..++.+++++.++.+...++ .+.++.+++.+|+++|+|+|+++..++++.+ .+.++-.++.+++.+
T Consensus 94 ~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESll 172 (559)
T TIGR00840 94 GSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLL 172 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhh
Confidence 999999999999988877776553 1458899999999999999999999999987 588999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchhHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHH
Q 047751 307 QDCAVGLLFALLPVLGGSSGVLQGVISM----TKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFC 382 (580)
Q Consensus 307 ~Dv~~~lllal~~~l~~~~~~~~~~~~~----~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~ 382 (580)
||..+++++.++..+...++...+..+. ...+...++.++++.+++ ++..++.|+... .+.....++++.+
T Consensus 173 NDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G-~l~~~l~r~~~~----~~~~e~~l~l~~~ 247 (559)
T TIGR00840 173 NDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFG-FLVAFITRFTHH----IRQIEPLFVFLIS 247 (559)
T ss_pred hccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc----cchhHHHHHHHHH
Confidence 9999999987766554311110011111 111222223333333333 344455555432 1234456678888
Q ss_pred HHHHHHHHHhCchHHHHHHHHHHHhcCC---CchhhHH----HhHHhHHHHHHHHHHHHHhhhhhHH-hHhHHHHHHHHH
Q 047751 383 LLVAWCSDKLGLSLELGSFAAGVMISTT---DLAQHTL----EQVEPIRNFFAALFLASIGMLIHVH-FLWNHVDILLAA 454 (580)
Q Consensus 383 l~~~~lae~lGls~~lGaFvaGl~l~~~---~~~~~l~----~~l~~i~~~f~plFFv~iGl~id~~-~l~~~~~~~l~~ 454 (580)
++++.++|.+|.|++++++++|+++.+. ...++.. +-.+.+..+...+.|+.+|+.+... ..+ .|..++..
T Consensus 248 yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~-~~~~i~~~ 326 (559)
T TIGR00840 248 YLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEW-NWAFVVAT 326 (559)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH-HHHHHHHH
Confidence 8999999999999999999999999753 1222222 2233445688899999999987322 112 23333333
Q ss_pred HHHHHHHHHHHHHHHHhh------cCCChHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 047751 455 VLLVIVVKTVVVATVIKG------FRYSNKTSLLVGMSLAQIGEFAFVLLSRASN 503 (580)
Q Consensus 455 vl~~~~~K~l~~~l~~~~------~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~ 503 (580)
++..++.|+++++..++. .+.++||.+.+++ .+.||.++++++...-+
T Consensus 327 l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~ 380 (559)
T TIGR00840 327 LSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDE 380 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCC
Confidence 455578888888766543 3578999999999 58999999988875433
No 16
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.73 E-value=6.1e-14 Score=149.65 Aligned_cols=297 Identities=15% Similarity=0.145 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHH----HHhhhH--HHHHHHHHHHHHHHHHHHHHHhcCCChHH-HHHHHHHHhhc
Q 047751 205 VQVETVAQFGVIFLLFALGLEFSTAKL----RVVRAV--AILGGLLQIFLFMCLCGIIASLCGGKPSE-GVFVGVLLSMS 277 (580)
Q Consensus 205 ~~le~la~lGli~llF~~GLeld~~~l----~~~~~~--av~ia~~~~ll~~~l~~~~~~~lg~~~~~-al~ig~~ls~T 277 (580)
...+.+.+.-+.++.|.+|+|+..+.+ ++.+|. .+..++.+++.|.++...+ ...... .--+ .+-..|
T Consensus 61 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~~~----n~~~~~~~~GW-~Ip~AT 135 (423)
T PRK14853 61 SLGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYVAV----NLAGGGALRGW-AIPTAT 135 (423)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHHHH----hCCchhhhhhh-hhhhhh
Confidence 456667777788899999999976533 333332 2456778888886543332 221111 1122 233458
Q ss_pred cHHHHHHHHhhhccc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047751 278 STAVVLKFLMERNSI-SALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCV 356 (580)
Q Consensus 278 S~~Vv~~iL~e~~~~-~s~~g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~ 356 (580)
+.+....+|...+.. ++..+..+++.+++||+.++++++++. +++ .+..+.....+.+ ++.+++
T Consensus 136 DIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY----t~~-----i~~~~L~~a~~~~-~~l~~l----- 200 (423)
T PRK14853 136 DIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY----TSE-----LNLEALLLALVPL-ALFWLL----- 200 (423)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc----CCC-----CCHHHHHHHHHHH-HHHHHH-----
Confidence 999999999998754 889999999999999999998887765 111 1112222221111 111111
Q ss_pred HHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC------------CchhhHHHhHHhHH
Q 047751 357 PWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT------------DLAQHTLEQVEPIR 424 (580)
Q Consensus 357 ~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~------------~~~~~l~~~l~~i~ 424 (580)
++ + +.++.+.+..+ .+.+++.++..|+|+.+|+|++|+++|.. +..++++|+++++.
T Consensus 201 ----~~---~--~V~~~~~Y~il--g~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V 269 (423)
T PRK14853 201 ----VQ---K--RVRKWWLLLPL--GVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLS 269 (423)
T ss_pred ----HH---c--CCchhhHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHH
Confidence 11 1 12333333333 34667799999999999999999999952 12467889999985
Q ss_pred -HHHHHHH-HHHHhhhhhH-HhHhHHHH--HHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHHHh
Q 047751 425 -NFFAALF-LASIGMLIHV-HFLWNHVD--ILLAAVLLVIVVKTVVVATVIKGF----------RYSNKTSLLVGMSLAQ 489 (580)
Q Consensus 425 -~~f~plF-Fv~iGl~id~-~~l~~~~~--~~l~~vl~~~~~K~l~~~l~~~~~----------~~~~r~a~~lgl~L~~ 489 (580)
.+++|+| |+..|.++|. +.+.+... ..+.+++..+++|.++.+..++.. +.++++-..+|+ ++.
T Consensus 270 ~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~-L~G 348 (423)
T PRK14853 270 AGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVAL-LAG 348 (423)
T ss_pred HHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHH-HHH
Confidence 7999999 9999999976 43422222 456667788999999987776643 456777666666 444
Q ss_pred HH-HHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047751 490 IG-EFAFVLLSRASN-LHLVEGKLYLLLLGTTALSLVTTPLLFKLI 533 (580)
Q Consensus 490 rG-~~~lvla~~a~~-~gii~~~~~~~lv~~vllS~l~~Pll~~l~ 533 (580)
.| ++++-+++.+.+ ..-..++.-.-++...+++.+++-++.|..
T Consensus 349 IGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~s~~~G~~~l~~~ 394 (423)
T PRK14853 349 IGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLIAALLASVLLRLR 394 (423)
T ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44 466777888873 221222233333445566667776666554
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.5e-15 Score=151.73 Aligned_cols=336 Identities=13% Similarity=0.050 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCCCCc------hHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhH
Q 047751 164 VIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSE------MVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAV 237 (580)
Q Consensus 164 il~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~i~~------~~~le~la~lGli~llF~~GLeld~~~l~~~~~~ 237 (580)
+.+++...-.+-+++-+...+---+.|+++||++++..++ +.....++.+-+..-.|.+++|+.-+.+.++|+.
T Consensus 22 ~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~S 101 (467)
T KOG4505|consen 22 VSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRS 101 (467)
T ss_pred HHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHH
Confidence 3344444444555655555555668999999999988753 3467888999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHhhccHHHHHHHHhhhc---ccCcchHHHHHHHHHHHHHHHH
Q 047751 238 AILGGLLQIFLFMCLCGIIASLC--GGKPSEGVFVGVLLSMSSTAVVLKFLMERN---SISALHGQVTIGTLILQDCAVG 312 (580)
Q Consensus 238 av~ia~~~~ll~~~l~~~~~~~l--g~~~~~al~ig~~ls~TS~~Vv~~iL~e~~---~~~s~~g~l~ls~avl~Dv~~~ 312 (580)
...+-..-+..-+++.+.+.|.+ +.+...++.+++|+++|+|.....+..+.+ +.+.++..++.+++..||..++
T Consensus 102 i~vlllpVmi~gwlvs~~fvy~l~p~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMai 181 (467)
T KOG4505|consen 102 IFVLLLPVMIIGWLVSFGFVYALIPNLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAI 181 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcch
Confidence 76554433333344444444433 678899999999999999877777776543 4567788899999999999988
Q ss_pred HHHHHHHHHhcCCCc---chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHH
Q 047751 313 LLFALLPVLGGSSGV---LQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCS 389 (580)
Q Consensus 313 lllal~~~l~~~~~~---~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~la 389 (580)
.++-+..-+....+. ..++. ...++.-+.|..+...+..++.+..+|+..++.-...|++...-+++.+.+..+.
T Consensus 182 pflflai~Ll~h~~~r~~~rdwv--~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl~lfc~gig 259 (467)
T KOG4505|consen 182 PFLFLAIDLLRHKPRRKAGRDWV--CDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVLALFCMGIG 259 (467)
T ss_pred hHHHHHHHHHhcCchhccCCcee--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhh
Confidence 877665444322211 11111 1223333333333333333455555666555433467888888889999999999
Q ss_pred HHhCchHHHHHHHHHHHhcCC-CchhhHHH-hHHhHHH-HHHHHHHHHHhhhhhHHhHhHH------HHHHHHHHHHHHH
Q 047751 390 DKLGLSLELGSFAAGVMISTT-DLAQHTLE-QVEPIRN-FFAALFLASIGMLIHVHFLWNH------VDILLAAVLLVIV 460 (580)
Q Consensus 390 e~lGls~~lGaFvaGl~l~~~-~~~~~l~~-~l~~i~~-~f~plFFv~iGl~id~~~l~~~------~~~~l~~vl~~~~ 460 (580)
+.+|.+-.+-.|.||..++=. -+..+..+ ++..+.| ++.-.||++.|..++.+.+... |..++..+.+.+.
T Consensus 260 tiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi~iif~ 339 (467)
T KOG4505|consen 260 TIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSITIIFI 339 (467)
T ss_pred heechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHHHHHHh
Confidence 999999999999999999854 34444433 6767755 7778899999999998876422 2222222233333
Q ss_pred HHHHHHHHHHhhc--CCChHHHHHHHHHHHhHHHHHHHHHHHHH
Q 047751 461 VKTVVVATVIKGF--RYSNKTSLLVGMSLAQIGEFAFVLLSRAS 502 (580)
Q Consensus 461 ~K~l~~~l~~~~~--~~~~r~a~~lgl~L~~rG~~~lvla~~a~ 502 (580)
-|+.++++.-... =.++||++++|. .+|.|.-++..+..+.
T Consensus 340 RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 340 RRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred cccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 3444443322221 136999999999 7999998888887775
No 18
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.59 E-value=4.3e-13 Score=145.67 Aligned_cols=374 Identities=14% Similarity=0.111 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHhhCcCCCCCC----C---c--hHHHHHHHHHHHHHHHHHHhhc
Q 047751 158 ISDLVVVIVSATCGGIAFACAG---QPVITGYLLAGSVIGPGGFSFV----S---E--MVQVETVAQFGVIFLLFALGLE 225 (580)
Q Consensus 158 i~~l~lil~~a~l~~~l~~rl~---lP~ivg~IlaGilLGPs~Lg~i----~---~--~~~le~la~lGli~llF~~GLe 225 (580)
++-.+.+++.+.+.++++++-| +|.-+.-++-|+++|-.....- + . ...-+.+-.+-+--+.|..|.+
T Consensus 37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~sgy~ 116 (575)
T KOG1965|consen 37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNSGYS 116 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhcccce
Confidence 4556666778888999999988 9999999999999985422111 1 0 0112244445566688999999
Q ss_pred CChhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc-------CCChHHHHHHHHHHhhccHHHHHHHHhhhcccCcchHH
Q 047751 226 FSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLC-------GGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQ 298 (580)
Q Consensus 226 ld~~~l~~~~~~av~ia~~~~ll~~~l~~~~~~~l-------g~~~~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~ 298 (580)
++.+.++++.......++.++.+...+.+...+++ ++++.+++++|+++|+|+|..+..+++|++. +...=.
T Consensus 117 l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~v-d~~Ly~ 195 (575)
T KOG1965|consen 117 LKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELGV-DPKLYT 195 (575)
T ss_pred echhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhCC-Ccceee
Confidence 99999999999999888888777655444444433 4578999999999999999999999999984 455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHhhccCcchHHHHH
Q 047751 299 VTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITF-LAILTILSRTCVPWCLKLMISLSSQTNELYQLA 377 (580)
Q Consensus 299 l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~f-ilv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~ 377 (580)
++-|++++||..+++++......+..........+....++..... ..++...+ .+.-...|.+.-++....| ..+
T Consensus 196 LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~G-lisA~~lK~~~l~~~~~lE--~al 272 (575)
T KOG1965|consen 196 LVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIG-LISALVLKFLYLRRTPSLE--SAL 272 (575)
T ss_pred eeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCcHHH--HHH
Confidence 8899999999999999877765554332211111122222222111 11111112 1122223333222223344 345
Q ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC------CchhhHHHh-HHhHHHHHHHHHHHHHhhhh-hHHhHhHH-H
Q 047751 378 SVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT------DLAQHTLEQ-VEPIRNFFAALFLASIGMLI-HVHFLWNH-V 448 (580)
Q Consensus 378 ~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~------~~~~~l~~~-l~~i~~~f~plFFv~iGl~i-d~~~l~~~-~ 448 (580)
++.+....+.++|.+|+|+++..+..|+.+++. +..+...++ ++.+.-+...+-|+++|+.+ +....... .
T Consensus 273 ~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~~~~~ 352 (575)
T KOG1965|consen 273 MLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHVYKSL 352 (575)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccceeeech
Confidence 677778899999999999999999999999973 222222333 34444555666699999743 33222111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc------C----CChHHHHHHHHHHHhHHHHHHHHHHHHHhC------CCChHHHH
Q 047751 449 DILLAAVLLVIVVKTVVVATVIKGF------R----YSNKTSLLVGMSLAQIGEFAFVLLSRASNL------HLVEGKLY 512 (580)
Q Consensus 449 ~~~l~~vl~~~~~K~l~~~l~~~~~------~----~~~r~a~~lgl~L~~rG~~~lvla~~a~~~------gii~~~~~ 512 (580)
..+....++++++|..-.+-.+.+. + .|.+....+.|.=.-||.+++.++..-... +.+=..+-
T Consensus 353 ~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~q~i~tttl 432 (575)
T KOG1965|consen 353 QFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGGQTIFTTTL 432 (575)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccccEEEEeee
Confidence 2233334455666665544433332 2 445555666665458999998887643211 11111121
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhhh
Q 047751 513 LLLLGT-TALSLVTTPLLFKLIPA 535 (580)
Q Consensus 513 ~~lv~~-vllS~l~~Pll~~l~p~ 535 (580)
.+.+++ .+....+.|.+..+-|+
T Consensus 433 ~vVlfT~lv~Gg~T~pml~~L~~~ 456 (575)
T KOG1965|consen 433 VVVLFTVLVFGGSTKPMLSYLMIS 456 (575)
T ss_pred eeeeeeeeeeCCccHHHHHHhccc
Confidence 222222 33355678888877653
No 19
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.31 E-value=2.9e-09 Score=112.04 Aligned_cols=268 Identities=16% Similarity=0.163 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHH----HhhhH--HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcc
Q 047751 205 VQVETVAQFGVIFLLFALGLEFSTAKLR----VVRAV--AILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSS 278 (580)
Q Consensus 205 ~~le~la~lGli~llF~~GLeld~~~l~----~~~~~--av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~TS 278 (580)
...+-+.+.-+.++.|.+|+|+..+.+. +.+|. .+..++.+++.|.++-..+-. |.+. ..--+|+- ..|+
T Consensus 51 ~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~n~--~~~~-~~~GW~IP-~ATD 126 (373)
T TIGR00773 51 SLLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFNA--NDPI-TREGWAIP-AATD 126 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCc-ccCccccc-cHHH
Confidence 4566677777888899999999887653 22332 345677788888654333221 1110 00011111 1244
Q ss_pred HHHHHHHHhhhc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047751 279 TAVVLKFLMERN-SISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVP 357 (580)
Q Consensus 279 ~~Vv~~iL~e~~-~~~s~~g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~ 357 (580)
.+-...++.=.+ +.+......+++-+++||+.++++.+++. +++ .+..+.....+.+ .+.++
T Consensus 127 iAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FY----t~~-----i~~~~L~~a~~~~-~~l~~------- 189 (373)
T TIGR00773 127 IAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFY----TND-----LSMAALLVAAVAI-AVLAV------- 189 (373)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeec----CCC-----CCHHHHHHHHHHH-HHHHH-------
Confidence 444444443332 34566678899999999999888776643 111 1122222222111 11111
Q ss_pred HHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCC-c----hhhHHHhHHhHH-HHHHHHH
Q 047751 358 WCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTD-L----AQHTLEQVEPIR-NFFAALF 431 (580)
Q Consensus 358 ~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~~-~----~~~l~~~l~~i~-~~f~plF 431 (580)
+++. +.++...+..+. + ..++.....|+|+.+|+|++|+++|..+ . .+++++.+++.. .+++|+|
T Consensus 190 --~~~~-----~v~~~~~y~~lg-v-llW~~~~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPlF 260 (373)
T TIGR00773 190 --LNRC-----GVRRLGPYMLVG-V-ILWFAVLKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPLF 260 (373)
T ss_pred --HHHc-----CCchhhHHHHHH-H-HHHHHHHHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1211 123333333322 2 2334447999999999999999999742 1 356677777775 5788999
Q ss_pred -HHHHhhhhhHHhHhHH-HHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHHHhHH-HHHHHHH
Q 047751 432 -LASIGMLIHVHFLWNH-VDILLAAVLLVIVVKTVVVATVIKGF----------RYSNKTSLLVGMSLAQIG-EFAFVLL 498 (580)
Q Consensus 432 -Fv~iGl~id~~~l~~~-~~~~l~~vl~~~~~K~l~~~l~~~~~----------~~~~r~a~~lgl~L~~rG-~~~lvla 498 (580)
|+..|.++|...+... ....+.+++..+++|.++++..++.. +.++++-.-+|+ ++..| ++++-++
T Consensus 261 AFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~-L~GIGFTmSlfI~ 339 (373)
T TIGR00773 261 AFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGV-LCGIGFTMSIFIA 339 (373)
T ss_pred HHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999986544221 22355666778999999998887643 456777666666 44444 4566677
Q ss_pred HHHHh
Q 047751 499 SRASN 503 (580)
Q Consensus 499 ~~a~~ 503 (580)
+.+.+
T Consensus 340 ~LAf~ 344 (373)
T TIGR00773 340 SLAFG 344 (373)
T ss_pred HHhcC
Confidence 77774
No 20
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.06 E-value=8.5e-08 Score=102.68 Aligned_cols=298 Identities=15% Similarity=0.169 Sum_probs=172.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCChhHHH----Hhhh--HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhc
Q 047751 204 MVQVETVAQFGVIFLLFALGLEFSTAKLR----VVRA--VAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMS 277 (580)
Q Consensus 204 ~~~le~la~lGli~llF~~GLeld~~~l~----~~~~--~av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~T 277 (580)
....+.+.+.-+.++.|.+|+|+.-+.+. +.+| ..+..++.+++.|.++...+-. +.+ ..--+|+-. .|
T Consensus 66 ~sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~~n~--~~~--~~~GWgIPm-AT 140 (438)
T PRK14856 66 FSLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFFLNA--DTP--SQHGFGIPM-AT 140 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhheec--CCC--ccCcccccc-HH
Confidence 34566677788888999999999877653 2222 2345677778888654333211 111 111111111 25
Q ss_pred cHHHHHHHHhhhc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047751 278 STAVVLKFLMERN-SISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCV 356 (580)
Q Consensus 278 S~~Vv~~iL~e~~-~~~s~~g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~ 356 (580)
+.+-...++.=.+ ..+......+++-+++||+.++++++++. +++ .+..+.....+.+. +.++
T Consensus 141 DIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY----t~~-----i~~~~L~~a~~~~~-~l~~------ 204 (438)
T PRK14856 141 DIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFY----TTN-----LKFAWLLGALGVVL-VLAV------ 204 (438)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec----CCC-----CcHHHHHHHHHHHH-HHHH------
Confidence 5555555554443 24556778899999999999888776653 111 12223332222211 1111
Q ss_pred HHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCc------------------------
Q 047751 357 PWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDL------------------------ 412 (580)
Q Consensus 357 ~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~~~------------------------ 412 (580)
+++.. .+....+.. +.+..++....-|+|+.++..+.|+++|..+.
T Consensus 205 ---ln~~~-----v~~~~~Y~~--~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (438)
T PRK14856 205 ---LNRLN-----VRSLIPYLL--LGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALL 274 (438)
T ss_pred ---HHHcC-----CccccHHHH--HHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcccccccc
Confidence 12111 122222222 33445677778999999999999999995311
Q ss_pred ---------------------hhhHHHhHHhHH-HHHHHHH-HHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047751 413 ---------------------AQHTLEQVEPIR-NFFAALF-LASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATV 469 (580)
Q Consensus 413 ---------------------~~~l~~~l~~i~-~~f~plF-Fv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~ 469 (580)
.+++++.+++.. .+.+|+| |+-.|..++.+.........+.+++..++||.++.+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~ 354 (438)
T PRK14856 275 TKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDKVLLGVILGLCLGKPLGIFLI 354 (438)
T ss_pred ccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCcHHHHHHHHHHhcchHHHHHH
Confidence 134555666664 4789999 89999999754322112345566677789999998877
Q ss_pred Hhhc----------CCChHHHHHHHHHHHhHH-HHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047751 470 IKGF----------RYSNKTSLLVGMSLAQIG-EFAFVLLSRASNL--HLVEGKLYLLLLGTTALSLVTTPLLFKLI 533 (580)
Q Consensus 470 ~~~~----------~~~~r~a~~lgl~L~~rG-~~~lvla~~a~~~--gii~~~~~~~lv~~vllS~l~~Pll~~l~ 533 (580)
++.. ++++++-.-+|+ ++..| ++++-+++.+.+. ....++.-.-++...+++.+++-++.|+.
T Consensus 355 s~lavkl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~lsai~G~~~L~~~ 430 (438)
T PRK14856 355 TFISEKLKITARPKGISWWHILGAGL-LAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLISGIIGALYLFAL 430 (438)
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7643 456777666666 44444 4566677777743 21222333333445566666666655543
No 21
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.90 E-value=8.3e-07 Score=94.82 Aligned_cols=264 Identities=19% Similarity=0.174 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHH---HhhhH---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcc
Q 047751 205 VQVETVAQFGVIFLLFALGLEFSTAKLR---VVRAV---AILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSS 278 (580)
Q Consensus 205 ~~le~la~lGli~llF~~GLeld~~~l~---~~~~~---av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~TS 278 (580)
...+.+.+.-+.++.|.+|+|+.-+.+. +..|+ .+..++.+++.|.++...+-+ |.+. .--+|+-. .|+
T Consensus 62 sl~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~~n~--~~~~--~~GWgIPm-ATD 136 (423)
T PRK14855 62 SLEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTALNA--GGPG--ASGWGVPM-ATD 136 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCc--cCcccccc-HHH
Confidence 4556666777788899999999887653 22232 345667777777644333211 2111 11112111 255
Q ss_pred HHHHHHHHhhhc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047751 279 TAVVLKFLMERN-SISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVP 357 (580)
Q Consensus 279 ~~Vv~~iL~e~~-~~~s~~g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~ 357 (580)
.+-...++.=.+ ..+......+++-+++||+.++++.+++. +++. +..+.....+.+ ++.++
T Consensus 137 IAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY----t~~i-----~~~~L~~a~~~~-~~l~~------- 199 (423)
T PRK14855 137 IAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY----TSGL-----NLLALLLAALTW-ALALL------- 199 (423)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec----CCCC-----CHHHHHHHHHHH-HHHHH-------
Confidence 555555554443 24456778899999999999888776643 1111 122222222111 11111
Q ss_pred HHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC--Cc-----------------------
Q 047751 358 WCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT--DL----------------------- 412 (580)
Q Consensus 358 ~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~--~~----------------------- 412 (580)
+++. +.+....+.. ..+..++....-|+|+.++..+.|+++|.. +.
T Consensus 200 --ln~~-----~v~~~~~Y~~--~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (423)
T PRK14855 200 --AGRL-----GVTSLKIYAV--LGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARL 270 (423)
T ss_pred --HHHc-----CCccccHHHH--HHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHH
Confidence 1211 1222222222 234556777789999999999999999964 11
Q ss_pred -------------hhhHHHhHHhHHH-HHHHHH-HHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc----
Q 047751 413 -------------AQHTLEQVEPIRN-FFAALF-LASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGF---- 473 (580)
Q Consensus 413 -------------~~~l~~~l~~i~~-~f~plF-Fv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~~---- 473 (580)
.++++|.+++... +.+|+| |+..|..++-..+ . ...+.+++..+++|.++.+..++..
T Consensus 271 ~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~-~--pv~lGI~~GLvvGK~lGI~~~s~lavkl~ 347 (423)
T PRK14855 271 RDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGL-G--TVSLGVFLGLLLGKPLGVVGGAWLAVRLG 347 (423)
T ss_pred HhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCC-C--cHHHHHHHHHHhcchHHHHHHHHHHHHhC
Confidence 1345666777644 689999 8888988843321 1 2445566677889999988777643
Q ss_pred ------CCChHHHHHHHHHHHhHH-HHHHHHHHHHHh
Q 047751 474 ------RYSNKTSLLVGMSLAQIG-EFAFVLLSRASN 503 (580)
Q Consensus 474 ------~~~~r~a~~lgl~L~~rG-~~~lvla~~a~~ 503 (580)
++++++-.-+|+ ++..| ++++-+++.+.+
T Consensus 348 ~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~ 383 (423)
T PRK14855 348 LASLPRRVNWLHMLGAGL-LAGIGFTMSLFISNLAFA 383 (423)
T ss_pred CCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhCC
Confidence 456777666666 44444 456667777774
No 22
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.87 E-value=6.3e-07 Score=94.74 Aligned_cols=297 Identities=16% Similarity=0.118 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHH----Hhhh--HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcc
Q 047751 205 VQVETVAQFGVIFLLFALGLEFSTAKLR----VVRA--VAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSS 278 (580)
Q Consensus 205 ~~le~la~lGli~llF~~GLeld~~~l~----~~~~--~av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~TS 278 (580)
..-+.+.+.=+.++.|.+|+|+..+.+. +.+| ..+..++.+++.|.++...+-. |.+. ..--+|+-. .|+
T Consensus 58 sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n~--g~~~-~~~GWgIPm-ATD 133 (389)
T PRK09560 58 SLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNY--NNPE-TLRGWAIPA-ATD 133 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCc-ccCcccccc-HHH
Confidence 3456667777788899999999877653 2222 2355677788888654333211 1110 000111111 245
Q ss_pred HHHHHHHHhhhc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047751 279 TAVVLKFLMERN-SISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVP 357 (580)
Q Consensus 279 ~~Vv~~iL~e~~-~~~s~~g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~ 357 (580)
.+-...++.=.+ ..+......+++-+++||+.++++.+++. +++ .+..+.....+.+ ++.++
T Consensus 134 IAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FY----t~~-----i~~~~L~~a~~~~-~~l~~------- 196 (389)
T PRK09560 134 IAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFY----TSD-----LSLPALALAAIAI-AVLFL------- 196 (389)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec----CCC-----CCHHHHHHHHHHH-HHHHH-------
Confidence 555444444332 34566678899999999999888776643 111 1222223222211 11111
Q ss_pred HHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCc-------hhhHHHhHHhHHH-HHHH
Q 047751 358 WCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDL-------AQHTLEQVEPIRN-FFAA 429 (580)
Q Consensus 358 ~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~~~-------~~~l~~~l~~i~~-~f~p 429 (580)
+++. +.+....+..+ .+..++....-|+|+.++..+.|+++|..+. .++++|.+++... +.+|
T Consensus 197 --ln~~-----~v~~~~~Y~~~--G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlP 267 (389)
T PRK09560 197 --LNRL-----GVTKLTPYLIV--GAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILP 267 (389)
T ss_pred --HHHc-----CCccchHHHHH--HHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHH
Confidence 1111 12222233333 3455677778999999999999999996411 3567888888865 5599
Q ss_pred HH-HHHHhhhhhHHhHhHH-HHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHHHhHH-HHHHH
Q 047751 430 LF-LASIGMLIHVHFLWNH-VDILLAAVLLVIVVKTVVVATVIKGF----------RYSNKTSLLVGMSLAQIG-EFAFV 496 (580)
Q Consensus 430 lF-Fv~iGl~id~~~l~~~-~~~~l~~vl~~~~~K~l~~~l~~~~~----------~~~~r~a~~lgl~L~~rG-~~~lv 496 (580)
+| |+..|..++-..+... ....+.+.+..+++|.++.+..++.. +.++++-.-+|+ ++..| ++++-
T Consensus 268 lFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~-L~GIGFTmSLF 346 (389)
T PRK09560 268 LFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSV-LCGIGFTMSLF 346 (389)
T ss_pred HHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHH
Confidence 99 8888988843223221 12445666777899999988877643 456777666666 44444 45666
Q ss_pred HHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 047751 497 LLSRASN-LHLVEGKLYLLLLGTTALSLVTTPLLFKL 532 (580)
Q Consensus 497 la~~a~~-~gii~~~~~~~lv~~vllS~l~~Pll~~l 532 (580)
+++.+.+ .+...++.-.-++...+++.+++-++.|.
T Consensus 347 Ia~LAF~~~~~~~~~aKigIL~~S~~aai~g~~~l~~ 383 (389)
T PRK09560 347 IGSLAFGASEELLTEARLGILLGSLLSAILGYLLLRL 383 (389)
T ss_pred HHHhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777773 21122222222333445555555555544
No 23
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.85 E-value=8.1e-07 Score=93.81 Aligned_cols=298 Identities=16% Similarity=0.127 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHH---HhhhH---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcc
Q 047751 205 VQVETVAQFGVIFLLFALGLEFSTAKLR---VVRAV---AILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSS 278 (580)
Q Consensus 205 ~~le~la~lGli~llF~~GLeld~~~l~---~~~~~---av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~TS 278 (580)
...+.+.+.=+.++.|.+|+|+..+.+. +..|+ .+..++.+++.|.++...+-. |.+. ..--+|+- ..|+
T Consensus 58 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~n~--~~~~-~~~GWaIP-~ATD 133 (388)
T PRK09561 58 PLLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLFNY--ADPV-TREGWAIP-AATD 133 (388)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCc-ccCccccc-cHHH
Confidence 3456666777788899999999888653 22232 345677788888654333211 1110 00011111 1244
Q ss_pred HHHHHHHHhhhc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047751 279 TAVVLKFLMERN-SISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVP 357 (580)
Q Consensus 279 ~~Vv~~iL~e~~-~~~s~~g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~ 357 (580)
.+-...++.=.+ +.+......+++-+++||+.++++.+++. +++ .+........+.+ .+.++
T Consensus 134 IAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY----t~~-----i~~~~L~~a~~~~-~~l~~------- 196 (388)
T PRK09561 134 IAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFY----TSD-----LSMVSLGVAAVAI-AVLAV------- 196 (388)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec----CCC-----ccHHHHHHHHHHH-HHHHH-------
Confidence 444444444332 34566678899999999999888776653 111 1112222211111 11111
Q ss_pred HHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCC-----chhhHHHhHHhHHH-HHHHHH
Q 047751 358 WCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTD-----LAQHTLEQVEPIRN-FFAALF 431 (580)
Q Consensus 358 ~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~~-----~~~~l~~~l~~i~~-~f~plF 431 (580)
+++. +.+....+..+ .+..++....-|+|+.++..+.|+++|..+ ..++++|++++... +.+|+|
T Consensus 197 --ln~~-----~v~~~~~Y~~~--G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlF 267 (388)
T PRK09561 197 --LNLC-----GVRRTSVYILV--GVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILPLF 267 (388)
T ss_pred --HHHc-----CCccchHHHHH--HHHHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHHHH
Confidence 1211 12222233333 345567777899999999999999999742 13578888999855 589999
Q ss_pred -HHHHhhhhhHHhHhHH-HHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHHHhHH-HHHHHHH
Q 047751 432 -LASIGMLIHVHFLWNH-VDILLAAVLLVIVVKTVVVATVIKGF----------RYSNKTSLLVGMSLAQIG-EFAFVLL 498 (580)
Q Consensus 432 -Fv~iGl~id~~~l~~~-~~~~l~~vl~~~~~K~l~~~l~~~~~----------~~~~r~a~~lgl~L~~rG-~~~lvla 498 (580)
|+-.|..++-..+... ....+.+.+..+++|.++.+..++.. +.++++-.-+|+ ++..| ++++-++
T Consensus 268 AfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~-L~GIGFTmSLFIa 346 (388)
T PRK09561 268 AFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV-LCGIGFTMSIFIA 346 (388)
T ss_pred HhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHH
Confidence 8888888832222111 12445666677889999988777643 456777666666 44444 4566677
Q ss_pred HHHHhC--CCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047751 499 SRASNL--HLVEGKLYLLLLGTTALSLVTTPLLFKLI 533 (580)
Q Consensus 499 ~~a~~~--gii~~~~~~~lv~~vllS~l~~Pll~~l~ 533 (580)
+.+.+. +...++.-.-++...+++.+++-++.|..
T Consensus 347 ~LAF~~~~~~~~~~aKigIL~~S~~sai~g~~~l~~~ 383 (388)
T PRK09561 347 SLAFGGVDPELINYAKLGILIGSLLSAVIGYSWLRKV 383 (388)
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777742 11112222223334555566665555543
No 24
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.85 E-value=8.3e-07 Score=93.42 Aligned_cols=297 Identities=15% Similarity=0.144 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHH----Hhhh--HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhcc
Q 047751 205 VQVETVAQFGVIFLLFALGLEFSTAKLR----VVRA--VAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSS 278 (580)
Q Consensus 205 ~~le~la~lGli~llF~~GLeld~~~l~----~~~~--~av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~TS 278 (580)
...+-+.+.=+.++.|.+|+|+..+.+. +.+| ..+..++.+++.|.++...+-+ +. ...--+|+- ..|+
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~--~~--~~~~GW~IP-~ATD 129 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINH--DI--KVINGWAIP-SATD 129 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhcc--CC--cccCccccc-cHHH
Confidence 4566677777788899999999877543 2223 2355677788888654433321 10 000111111 1244
Q ss_pred HHHHHHHHhhhc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 047751 279 TAVVLKFLMERN-SISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVP 357 (580)
Q Consensus 279 ~~Vv~~iL~e~~-~~~s~~g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~ 357 (580)
.+-...++.=.+ +.+....-.+++-+++||+.++++.+++. +++. +........+. +.+.++
T Consensus 130 IAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY----t~~i-----~~~~L~~A~~~-~~~l~~------- 192 (383)
T PRK14854 130 IAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY----TKSL-----SLLSLSLGTLF-ILAMII------- 192 (383)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec----CCCc-----cHHHHHHHHHH-HHHHHH-------
Confidence 444444443332 34566677888999999999888776643 1111 11122211111 111111
Q ss_pred HHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCC-----chhhHHHhHHhH-HHHHHHHH
Q 047751 358 WCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTD-----LAQHTLEQVEPI-RNFFAALF 431 (580)
Q Consensus 358 ~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~~-----~~~~l~~~l~~i-~~~f~plF 431 (580)
++|.. +.+....+.. ..+..++....-|+|+.++..+.|+++|..+ ..++++|.+++. ..+.+|+|
T Consensus 193 --~nr~~----~v~~~~~Y~~--~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlF 264 (383)
T PRK14854 193 --CNRIF----KINRSSVYVV--LGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPVF 264 (383)
T ss_pred --HHHhc----CCceehHHHH--HHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHH
Confidence 11110 1122222222 3345677778999999999999999999742 135788888887 46889999
Q ss_pred -HHHHhhhhhHHhHhHH-HHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHHHhHH-HHHHHHH
Q 047751 432 -LASIGMLIHVHFLWNH-VDILLAAVLLVIVVKTVVVATVIKGF----------RYSNKTSLLVGMSLAQIG-EFAFVLL 498 (580)
Q Consensus 432 -Fv~iGl~id~~~l~~~-~~~~l~~vl~~~~~K~l~~~l~~~~~----------~~~~r~a~~lgl~L~~rG-~~~lvla 498 (580)
|+..|..++-..+... ....+.+.+..+++|.++.+..++.. +.++++-.-+|+ ++..| ++++-++
T Consensus 265 A~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~-L~GIGFTmSLFIa 343 (383)
T PRK14854 265 AFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISL-LCGIGFTMSLFIG 343 (383)
T ss_pred HhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHH
Confidence 8888988842222111 12445666677889999888777643 356777766766 44444 4666778
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 047751 499 SRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKL 532 (580)
Q Consensus 499 ~~a~~~gii~~~~~~~lv~~vllS~l~~Pll~~l 532 (580)
+.+.+.....++.-.-++...+++.+.+-++.|.
T Consensus 344 ~LAF~~~~~~~~aKigIL~gS~~aai~G~~~l~~ 377 (383)
T PRK14854 344 VLAFNDTHLLNAIKIGVVVGSVLSGFFGYIVLRF 377 (383)
T ss_pred HhhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887432122222222333455566666555544
No 25
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.59 E-value=8.9e-06 Score=83.13 Aligned_cols=290 Identities=16% Similarity=0.117 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHhhcCChhHHH---HhhhHH---HHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHhhccHHHHHH
Q 047751 212 QFGVIFLLFALGLEFSTAKLR---VVRAVA---ILGGLLQIFLFMCLCGIIASLCGG-KPSEGVFVGVLLSMSSTAVVLK 284 (580)
Q Consensus 212 ~lGli~llF~~GLeld~~~l~---~~~~~a---v~ia~~~~ll~~~l~~~~~~~lg~-~~~~al~ig~~ls~TS~~Vv~~ 284 (580)
+--+.++.+.+|+|+..+.+. ++++++ ...++.+++.|..+- .++.. ++...--+ ++=..|+.+-...
T Consensus 68 DgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAliy----~~~n~~~p~~~~GW-aIP~ATDiAFAlG 142 (390)
T COG3004 68 DGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIY----LALNAGDPATLEGW-AIPMATDIAFALG 142 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhHh----heeecCChhhhcCc-CcccHHHHHHHHH
Confidence 333455677899999988765 333332 344566666664322 22211 11000001 1112355555555
Q ss_pred HHhhhc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 047751 285 FLMERN-SISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLM 363 (580)
Q Consensus 285 iL~e~~-~~~s~~g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~ 363 (580)
+++=++ +.++...-.+++-+++||+-++++.++... .+ .+...... +++.+..+. . ++++
T Consensus 143 vlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt----~~-----Ls~~al~~---a~~~i~vL~---~----lN~~ 203 (390)
T COG3004 143 VLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT----TD-----LSMAALGI---AALAIAVLA---V----LNRL 203 (390)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc----CC-----ccHHHHHH---HHHHHHHHH---H----HHHh
Confidence 555443 456777788999999999988887776541 11 11111111 111111111 1 1211
Q ss_pred HhhccCcchHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC-----CchhhHHHhHHhHH-HHHHHHH-HHHHh
Q 047751 364 ISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT-----DLAQHTLEQVEPIR-NFFAALF-LASIG 436 (580)
Q Consensus 364 ~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~-----~~~~~l~~~l~~i~-~~f~plF-Fv~iG 436 (580)
.- +....++.+.. ..+..-..-|+|..+...+.|+++|-. ..-++++|.+.|.. .+.+|+| |+-.|
T Consensus 204 ~v-----~~l~~Y~~~gv--iLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNAG 276 (390)
T COG3004 204 GV-----RRLSPYLLVGV--ILWIAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANAG 276 (390)
T ss_pred Cc-----hhhhHHHHHHH--HHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccCC
Confidence 11 11112222222 234555688999999999999999943 23367778888874 5779999 88888
Q ss_pred hhhhHHhHhHH-HHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHHHhHH-HHHHHHHHHHHhC
Q 047751 437 MLIHVHFLWNH-VDILLAAVLLVIVVKTVVVATVIKGF----------RYSNKTSLLVGMSLAQIG-EFAFVLLSRASNL 504 (580)
Q Consensus 437 l~id~~~l~~~-~~~~l~~vl~~~~~K~l~~~l~~~~~----------~~~~r~a~~lgl~L~~rG-~~~lvla~~a~~~ 504 (580)
..+.=-.+... ....+.+.+..+++|.++.+..++.. +.++++-..+++ ++..| +.++-+++.+.+.
T Consensus 277 vsl~g~~~~~l~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~i-LcGIGFTMSlFI~~LAf~~ 355 (390)
T COG3004 277 VSLQGVSLSGLTSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSI-LCGIGFTMSLFIASLAFGS 355 (390)
T ss_pred cccccccccccccchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHH-HHhhhHHHHHHHHHHhcCC
Confidence 88762222111 12345555677889999888777642 456666666666 34444 4566677777654
Q ss_pred C-CChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047751 505 H-LVEGKLYLLLLGTTALSLVTTPLLFKLI 533 (580)
Q Consensus 505 g-ii~~~~~~~lv~~vllS~l~~Pll~~l~ 533 (580)
. ..+...-.-++.....|.+.+-..-|..
T Consensus 356 ~~~~~~~~klgIL~gS~~Sai~G~~~L~~~ 385 (390)
T COG3004 356 EDELQTAAKLGILVGSFISAILGYSYLRLL 385 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 2222222222334455555555554443
No 26
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.50 E-value=4e-07 Score=96.00 Aligned_cols=275 Identities=19% Similarity=0.191 Sum_probs=148.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCChhHHH----Hhhh--HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhc
Q 047751 204 MVQVETVAQFGVIFLLFALGLEFSTAKLR----VVRA--VAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMS 277 (580)
Q Consensus 204 ~~~le~la~lGli~llF~~GLeld~~~l~----~~~~--~av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~T 277 (580)
....+-+.+.=+.++.|.+|+|+..+... +.+| ..+..++.+++.|.++-..+-+ |.+ ...--+|+- ..|
T Consensus 53 ~~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl~~n~--~~~-~~~~GW~IP-~AT 128 (378)
T PF06965_consen 53 LSLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYLAFNA--GGP-EAAHGWAIP-MAT 128 (378)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGGG----SST-THHHHTSSS-S--
T ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHheeec--CCC-CcCceEEec-ccc
Confidence 34566677777888899999999877553 2222 2345567777777543222211 111 011111111 236
Q ss_pred cHHHHHHHHhhhc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 047751 278 STAVVLKFLMERN-SISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCV 356 (580)
Q Consensus 278 S~~Vv~~iL~e~~-~~~s~~g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~ 356 (580)
+.+-...++.=.+ ..+......+++-+++||+.++++.+++.. ++ .+..+.....+. +++.+.
T Consensus 129 DIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----~~-----i~~~~L~~a~~~-~~~l~~------ 192 (378)
T PF06965_consen 129 DIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT----DG-----ISLLWLLLAAAA-LLLLFV------ 192 (378)
T ss_dssp -HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS--------------HHHHHHHHHH-HHHHHH------
T ss_pred cHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC----CC-----CCHHHHHHHHHH-HHHHHH------
Confidence 6666666665443 345667789999999999999888777541 11 122222222111 111111
Q ss_pred HHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCch---------hhHHHhHHhHH-HH
Q 047751 357 PWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLA---------QHTLEQVEPIR-NF 426 (580)
Q Consensus 357 ~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~~~~---------~~l~~~l~~i~-~~ 426 (580)
+++.. .+....+..+. +..++....-|+|+.++..+.|+++|..+.. +++++.+++.. .+
T Consensus 193 ---l~r~~-----v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~ 262 (378)
T PF06965_consen 193 ---LNRLG-----VRSLWPYLLLG--ILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFV 262 (378)
T ss_dssp ---HHHTT--------THHHHHHH--HHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHT
T ss_pred ---HHHCC-----CceehHHHHHH--HHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhh
Confidence 12111 12222222222 3456667788999999999999999975433 36778888875 46
Q ss_pred HHHHH-HHHHhhhhhHHhHhHH-HHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHHHhHH-HH
Q 047751 427 FAALF-LASIGMLIHVHFLWNH-VDILLAAVLLVIVVKTVVVATVIKGF----------RYSNKTSLLVGMSLAQIG-EF 493 (580)
Q Consensus 427 f~plF-Fv~iGl~id~~~l~~~-~~~~l~~vl~~~~~K~l~~~l~~~~~----------~~~~r~a~~lgl~L~~rG-~~ 493 (580)
.+|+| |+..|..++-..+... ....+.+++..+++|.++.+..++.. ++++++-..+|+ ++..| ++
T Consensus 263 IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~-LaGIGFTm 341 (378)
T PF06965_consen 263 ILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGL-LAGIGFTM 341 (378)
T ss_dssp HHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHH-HTT--HHH
T ss_pred hHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHH
Confidence 69999 8999988875544322 22334555677899999988776643 344555555555 34444 46
Q ss_pred HHHHHHHHHhCCCChH
Q 047751 494 AFVLLSRASNLHLVEG 509 (580)
Q Consensus 494 ~lvla~~a~~~gii~~ 509 (580)
++-+++.+.+.....+
T Consensus 342 SLFIa~LAF~~~~~~~ 357 (378)
T PF06965_consen 342 SLFIAGLAFDDPALQN 357 (378)
T ss_dssp HHHHHHHHSTT-SSHH
T ss_pred HHHHHHHHcCChhhhh
Confidence 7778888887643333
No 27
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.44 E-value=9.6e-08 Score=104.21 Aligned_cols=320 Identities=13% Similarity=0.117 Sum_probs=191.7
Q ss_pred HHHHHHHHHHhcC--CcHHHHHHHHHHhhCcCCCCCCC-chHHHHHHH--HHHHHHHHHHHhhcCChhHHHHhhhHHHHH
Q 047751 167 SATCGGIAFACAG--QPVITGYLLAGSVIGPGGFSFVS-EMVQVETVA--QFGVIFLLFALGLEFSTAKLRVVRAVAILG 241 (580)
Q Consensus 167 ~a~l~~~l~~rl~--lP~ivg~IlaGilLGPs~Lg~i~-~~~~le~la--~lGli~llF~~GLeld~~~l~~~~~~av~i 241 (580)
.+.+.-.+..+++ .|--.-.|+.|+++|-...+.-. ...+++.-. -.-+--+++.+|.-|.-+.+..+...++..
T Consensus 53 LaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILlf 132 (670)
T KOG1966|consen 53 LAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAPFFLESDVFFLYLLPPIVLDAGYFMPNRAFFENLGTILLF 132 (670)
T ss_pred HHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccccccccccchhhhhcCHHHhcccccCccHHHHhccchhhhH
Confidence 3333333333444 68888888889888854322211 122333111 112223689999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHH------hcC--CChHHHHHHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHH
Q 047751 242 GLLQIFLFMCLCGIIAS------LCG--GKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGL 313 (580)
Q Consensus 242 a~~~~ll~~~l~~~~~~------~lg--~~~~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~l 313 (580)
+++|++.-.+..+...| .+| .+...-++.|...|+.+|..+..+..|.+. |.-.=-++.|++.+||.+.++
T Consensus 133 AVvGTi~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihV-Ne~LfI~VFGESLlNDaVTVV 211 (670)
T KOG1966|consen 133 AVVGTIWNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHV-NEVLFIIVFGESLLNDAVTVV 211 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhcc-ccEEEeeeehhhhhcCceEEe
Confidence 88888764333332222 345 346788999999999999999999999875 444445677999999998887
Q ss_pred HHHHHHHHhcC--CCc--c---hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHHHHHH
Q 047751 314 LFALLPVLGGS--SGV--L---QGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVA 386 (580)
Q Consensus 314 llal~~~l~~~--~~~--~---~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~ 386 (580)
+.-+...+..- +.. . .|..++.-+. .+.++++.+. .++.....|+.. ..+-...++++....++|
T Consensus 212 LY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVs---lGG~lvGivf-afl~sl~tkft~----~vrviePvfif~~pYlaY 283 (670)
T KOG1966|consen 212 LYNMFISFVEIGSDNLTTIDYVLGVVSFFVVS---LGGALVGIVF-AFLASLVTKFTK----HVRVLEPVFIFLLPYLAY 283 (670)
T ss_pred hHHHHHHHHHhcccceeEeeeecceeEEEEEe---cCchhHHHHH-HHHHHHHHHhhc----ceeeecchhhhhHHHHHH
Confidence 76554433221 110 0 0111110000 0011111111 111112222222 223333466778888999
Q ss_pred HHHHHhCchHHHHHHHHHHHhcCC---Cchhh---HHHhH-HhHHHHHHHHHHHHHhhhhhHHhHhHHHHH--HHHHHHH
Q 047751 387 WCSDKLGLSLELGSFAAGVMISTT---DLAQH---TLEQV-EPIRNFFAALFLASIGMLIHVHFLWNHVDI--LLAAVLL 457 (580)
Q Consensus 387 ~lae~lGls~~lGaFvaGl~l~~~---~~~~~---l~~~l-~~i~~~f~plFFv~iGl~id~~~l~~~~~~--~l~~vl~ 457 (580)
..+|..++|++++-.+.|+.+... ...++ ..+.+ ......--++-|+..|..+--. +++|.+ +.+.++.
T Consensus 284 L~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~wd~~Fi~~T~~f 361 (670)
T KOG1966|consen 284 LTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHHWDFAFICLTLVF 361 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--cceeehhhhhhHHHH
Confidence 999999999999999999999863 11222 22222 2223455677788888876322 344543 3333445
Q ss_pred HHHHHHHHHHHHHhhc------CCChHHHHHHHHHHHhHHHHHHHHH
Q 047751 458 VIVVKTVVVATVIKGF------RYSNKTSLLVGMSLAQIGEFAFVLL 498 (580)
Q Consensus 458 ~~~~K~l~~~l~~~~~------~~~~r~a~~lgl~L~~rG~~~lvla 498 (580)
..+.|.+++...+++. +++..|.+.++.+ +-||.+++.+.
T Consensus 362 c~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV 407 (670)
T KOG1966|consen 362 CLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLV 407 (670)
T ss_pred HHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEE
Confidence 5667888877776654 4677888888875 78888776553
No 28
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=98.20 E-value=0.0059 Score=65.73 Aligned_cols=287 Identities=17% Similarity=0.150 Sum_probs=143.4
Q ss_pred CCcHHHHHHHHHHhhCcCCCCCC--C-chHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 047751 179 GQPVITGYLLAGSVIGPGGFSFV--S-EMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGI 255 (580)
Q Consensus 179 ~lP~ivg~IlaGilLGPs~Lg~i--~-~~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~~ll~~~l~~~ 255 (580)
.+|.++-.++.|+++.. +|.+ + +.+.-+.+.+..+-+-+++.=++.|+++++|.+++.+..=+.+.+.. +++..
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~-viG~~ 100 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGT-VIGAV 100 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHH-HHHHH
Confidence 47888888899999987 4555 2 34567777777777777777788899999998888765544444333 33333
Q ss_pred HHH-hcCCC-hHHHHHHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHHHH-HHHHHHHHHHHHHhcC-------C
Q 047751 256 IAS-LCGGK-PSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQD-CAVGLLFALLPVLGGS-------S 325 (580)
Q Consensus 256 ~~~-~lg~~-~~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~D-v~~~lllal~~~l~~~-------~ 325 (580)
+++ +++.. ..+..=++.+++.|-..=......=...++.+ +-.++.+..-| +...+.+.++..+... .
T Consensus 101 va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~~--~~~~~a~~aaDnv~~~~~~~~l~~l~~~~~~~~~~~ 178 (378)
T PF05684_consen 101 VAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAVAEALGVS--DSLFAAALAADNVVMALWFAFLLALPPFARKFDRWT 178 (378)
T ss_pred HHHHHHhhcccchHHHHHHHHHhcccCchhHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhcc
Confidence 332 33321 12333334444443221111111111112222 23444444444 4443444433332220 0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHH----HHHh-----Cc--
Q 047751 326 GVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWC----SDKL-----GL-- 394 (580)
Q Consensus 326 ~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~l----ae~l-----Gl-- 394 (580)
.......+... .-.-.. ....++++..++ ....++..+....+ ++.+ +.
T Consensus 179 ~~~~~~~~~~~----------------~~~~~~--~~~~~~~~~~~~--l~~~la~a~~v~~~s~~la~~l~~~~~~~~~ 238 (378)
T PF05684_consen 179 KADTSSIEALE----------------EEIEAE--EAEWARKPISQD--LAFLLAVAFAVVALSHALAAWLPPLFAGISS 238 (378)
T ss_pred CCCccccchhh----------------hhhhhh--hhccccCCcHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 00000000000 000000 000000000011 11122222222222 2222 00
Q ss_pred --hHHHHHHHHHHHhcCCCchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047751 395 --SLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKG 472 (580)
Q Consensus 395 --s~~lGaFvaGl~l~~~~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~ 472 (580)
-.++-....|+..+-.+..+.+ .--+++..+++=+||+.+|++.|+..+.+ ....+...++.+....+..+...|.
T Consensus 239 ~~~~il~~tt~~l~~~~~~~~~~l-~g~~~lg~~lly~ffa~IGa~a~i~~l~~-ap~~~l~~~i~l~iH~~l~l~~~kl 316 (378)
T PF05684_consen 239 STWLILTVTTLGLATSFPPFRKLL-RGASELGTFLLYLFFAVIGASADISELLD-APSLFLFGFIILAIHLLLMLILGKL 316 (378)
T ss_pred cHHHHHHHHHHHHHHhccchhhcC-CchHHHHHHHHHHHHHHHccccCHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333445555444444443 55577888999999999999999999877 4444445566677888889999999
Q ss_pred cCCChHHHHHHHHHHHhHHHHH
Q 047751 473 FRYSNKTSLLVGMSLAQIGEFA 494 (580)
Q Consensus 473 ~~~~~r~a~~lgl~L~~rG~~~ 494 (580)
+|.|..+...-+- +..|..+
T Consensus 317 ~k~~l~~~~vAS~--AnIGGpa 336 (378)
T PF05684_consen 317 FKIDLFELLVASN--ANIGGPA 336 (378)
T ss_pred HCCCHHHHHHHhh--cccCCcc
Confidence 9999877654443 4444433
No 29
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.69 E-value=0.066 Score=55.93 Aligned_cols=108 Identities=17% Similarity=0.184 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhccHHHH
Q 047751 206 QVETVAQFGVIFLLFALGLEFSTAKLRVV---RAVAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSSTAVV 282 (580)
Q Consensus 206 ~le~la~lGli~llF~~GLeld~~~l~~~---~~~av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~TS~~Vv 282 (580)
.++..-...+.+++|..|+.+..+.+++. +|..+.+.+.++++.=.++..+.+.+. ....+..|..+..+.|..+
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~--l~~~l~~Gl~ll~~~Pggv 112 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP--LPPELAVGLLLLGCCPGGV 112 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHhHHheeeCCCch
Confidence 44445588999999999999999998854 444444445555544345555566555 4456667777666554444
Q ss_pred HHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHH
Q 047751 283 LKFLMERNSISALHGQVTIGTLILQDCAVGLLFAL 317 (580)
Q Consensus 283 ~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~lllal 317 (580)
.+...-. ..+.++. ..++.+.++.+.+.++.-+
T Consensus 113 ~S~~~t~-lAkGnVa-lsV~~tsvStll~~f~tPl 145 (319)
T COG0385 113 ASNAMTY-LAKGNVA-LSVCSTSVSTLLGPFLTPL 145 (319)
T ss_pred hHHHHHH-HhcCcHH-HHHHHHHHHHHHHHHHHHH
Confidence 3322221 1223332 3444455566665555433
No 30
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.61 E-value=0.031 Score=58.06 Aligned_cols=249 Identities=15% Similarity=0.145 Sum_probs=138.5
Q ss_pred HHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCh---HHHHHHHHHHhhccHHHHHHHHhhhc
Q 047751 214 GVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCGGKP---SEGVFVGVLLSMSSTAVVLKFLMERN 290 (580)
Q Consensus 214 Gli~llF~~GLeld~~~l~~~~~~av~ia~~~~ll~~~l~~~~~~~lg~~~---~~al~ig~~ls~TS~~Vv~~iL~e~~ 290 (580)
-+..++|..|-++|++...+.-+|...+-..-+.+.++++.++..++|.+- ...+.+-++.+.|.-..=..+..|++
T Consensus 50 il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~yG 129 (312)
T PRK12460 50 LLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIFGLSGLAIVAAMSNSNGGLYAALMGEFG 129 (312)
T ss_pred HHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccccchHHHHHHHHHhcCcHHHHHHHHHHcC
Confidence 345678999999999988877777766666666677777777777776432 23344444555566666666777766
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCc
Q 047751 291 SISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQT 370 (580)
Q Consensus 291 ~~~s~~g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~ 370 (580)
. ++|.|-..+ ..++| ++ ++..++.. ...+.. +|+
T Consensus 130 ~-~~d~gA~~~--~sl~~-----------------GP----------f~tm~aLg--a~gLA~--ip~------------ 163 (312)
T PRK12460 130 D-ERDVGAISI--LSLND-----------------GP----------FFTMLALG--AAGLAN--IPI------------ 163 (312)
T ss_pred C-HhhhhHHhh--hhhcc-----------------Cc----------HHHHHHHH--HHHHhc--CCh------------
Confidence 3 333332211 11222 21 01111100 000010 000
Q ss_pred chHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHH
Q 047751 371 NELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDI 450 (580)
Q Consensus 371 ~e~~~l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~ 450 (580)
..+ +. .+=+++.|+++.|.+ ++..+.+++=..+..|+|-+..|.++|++.+.+....
T Consensus 164 ---~~l--v~----------------lilpILiGmilGNld--~~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~ 220 (312)
T PRK12460 164 ---MAL--VA----------------ALLPLVLGMILGNLD--PDMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLA 220 (312)
T ss_pred ---HHH--HH----------------HHHHHHHHHHHhccc--hhhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChH
Confidence 000 11 223556677777743 2334455554456889999999999999998765333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH--HHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHHHHHHHH
Q 047751 451 LLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVG--MSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLG-TTALSLVTTP 527 (580)
Q Consensus 451 ~l~~vl~~~~~K~l~~~l~~~~~~~~~r~a~~lg--l~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~-~vllS~l~~P 527 (580)
.+.+.+..++.-....+...|++|.+.+.++.+| .+-+.-|-- .+.+.-. ..+.. .+..+..+. ++++|.++.|
T Consensus 221 GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpA-AVaAadP-~~~~~-~~~Ataqvaa~vivTail~P 297 (312)
T PRK12460 221 GILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPL-AIAAADP-SLAPV-AAAATAQVAASVIVTAILTP 297 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHH-HHHHhch-hHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455666666688899988888877 443332322 2222211 11111 234444444 5788999999
Q ss_pred HHHHhhh
Q 047751 528 LLFKLIP 534 (580)
Q Consensus 528 ll~~l~p 534 (580)
++..++.
T Consensus 298 ~~t~~~~ 304 (312)
T PRK12460 298 LLTSWVA 304 (312)
T ss_pred HHHHHHH
Confidence 9988874
No 31
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=97.23 E-value=0.29 Score=51.22 Aligned_cols=108 Identities=16% Similarity=0.232 Sum_probs=77.6
Q ss_pred hcCCcHHHHHHHHHHhhCcCCCCCCCc----hH-HHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHHHHHH
Q 047751 177 CAGQPVITGYLLAGSVIGPGGFSFVSE----MV-QVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMC 251 (580)
Q Consensus 177 rl~lP~ivg~IlaGilLGPs~Lg~i~~----~~-~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~~ll~~~ 251 (580)
..+++..+--|+.|+++|+...+.-+. .. .-+.+-++|+++ .|.++++.++.+.+...+......+...+.
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVVILTFL 98 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence 468899999999999999733333221 11 234677777665 699999999999999888888777777777
Q ss_pred HHHHHH-HhcCCChHHHHHHHHHHhhc---cHHHHHHHHhh
Q 047751 252 LCGIIA-SLCGGKPSEGVFVGVLLSMS---STAVVLKFLME 288 (580)
Q Consensus 252 l~~~~~-~~lg~~~~~al~ig~~ls~T---S~~Vv~~iL~e 288 (580)
.+..++ ..+|.+...+.++++--+.. +...+.+.++.
T Consensus 99 ~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a 139 (305)
T PF03601_consen 99 LTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKA 139 (305)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccC
Confidence 777777 88899888888877665553 33444444444
No 32
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.21 E-value=0.1 Score=54.15 Aligned_cols=276 Identities=16% Similarity=0.206 Sum_probs=144.9
Q ss_pred HHHHHHHHHhhC---cCCCCCCCc-hHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047751 183 ITGYLLAGSVIG---PGGFSFVSE-MVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIAS 258 (580)
Q Consensus 183 ivg~IlaGilLG---Ps~Lg~i~~-~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~~ll~~~l~~~~~~ 258 (580)
++-.++.|.++. |..+..+.. ...+-+=+..-+..++|..|.++|++...+.-||...+-+.-+++..+++.++..
T Consensus 15 mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~ 94 (314)
T PF03812_consen 15 MVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGK 94 (314)
T ss_pred eHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344555666654 444433322 1112122334456688999999999999988888877777777777777777777
Q ss_pred hcCCCh--------HHHHHHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh
Q 047751 259 LCGGKP--------SEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQG 330 (580)
Q Consensus 259 ~lg~~~--------~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~ 330 (580)
++|..- ...+.+-++++.+...+=..+..|++. ++|.|- .+..-++|.= +++.+
T Consensus 95 ~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd-~~D~gA--~~i~sl~~GP---f~tMl------------ 156 (314)
T PF03812_consen 95 FFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGD-EEDVGA--FSILSLNDGP---FFTML------------ 156 (314)
T ss_pred HcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCC-HHHhHH--HHHHHhhhhH---HHHHH------------
Confidence 776531 233444455555666777777777663 233332 1222222211 11100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC
Q 047751 331 VISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT 410 (580)
Q Consensus 331 ~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~~~e~~~l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~ 410 (580)
++ ..-+.--+|| ...+ ..+=+++.|+++.|-
T Consensus 157 ------------~L----G~sG~a~ip~-----------------~~lv----------------~~llP~iiG~iLGNL 187 (314)
T PF03812_consen 157 ------------AL----GASGLANIPW-----------------MSLV----------------AALLPIIIGMILGNL 187 (314)
T ss_pred ------------HH----hhccccCCCH-----------------HHHH----------------HHHHHHHHHHHHhcC
Confidence 00 0000000011 0001 123366778888775
Q ss_pred CchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHH--HHHHHHHHHHHHHHHHHHHHHHhhc-CCChHHHHHHHHHH
Q 047751 411 DLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHV--DILLAAVLLVIVVKTVVVATVIKGF-RYSNKTSLLVGMSL 487 (580)
Q Consensus 411 ~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~--~~~l~~vl~~~~~K~l~~~l~~~~~-~~~~r~a~~lgl~L 487 (580)
+ ++..+-+.+-...+.|+|-...|..+|++.+.+.- ++++.+ ..++.--...++.-|+. |-+-.- |+..
T Consensus 188 D--~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv--~~~~vtg~~~~~~dr~i~~~~g~a----G~A~ 259 (314)
T PF03812_consen 188 D--PDFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGV--IVVVVTGIPLYLADRLILKGNGVA----GAAI 259 (314)
T ss_pred C--HHHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHH--HHHHHHhHHHHHHHHHHcCCCCce----eehH
Confidence 3 45566666677899999999999999999987543 222222 22222223345555553 333222 3323
Q ss_pred HhHHHHHH----HHHHHHHhCCCChHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 047751 488 AQIGEFAF----VLLSRASNLHLVEGKLYLLLL-GTTALSLVTTPLLFKLIP 534 (580)
Q Consensus 488 ~~rG~~~l----vla~~a~~~gii~~~~~~~lv-~~vllS~l~~Pll~~l~p 534 (580)
+....-+. +++..--+....- +..+.-+ .++++|.+++|++..++.
T Consensus 260 sstAGnavatPaaiA~~dP~~~~~~-~~ATaQvAaavIvTail~P~lt~~~~ 310 (314)
T PF03812_consen 260 SSTAGNAVATPAAIAAADPSFAPYA-ASATAQVAAAVIVTAILTPILTSWWA 310 (314)
T ss_pred HhhhhhhhhhhHHHHHhChhhHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222 2222211222221 2333333 467889999999999874
No 33
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=97.21 E-value=0.026 Score=57.77 Aligned_cols=126 Identities=21% Similarity=0.309 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHHHhcCCCchh-hHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHH
Q 047751 382 CLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQ-HTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIV 460 (580)
Q Consensus 382 ~l~~~~lae~lGls~~lGaFvaGl~l~~~~~~~-~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~ 460 (580)
......+++.++++..+|-.++|+++...-.+. +-.+.++.+.++-..++....|+++|++.+.+.......+....++
T Consensus 4 a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~ 83 (273)
T TIGR00932 4 AVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVL 83 (273)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999998642220 1124567777888888899999999999987665443333323333
Q ss_pred HH-HHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChH
Q 047751 461 VK-TVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEG 509 (580)
Q Consensus 461 ~K-~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~ 509 (580)
.- +..++...++.+.++.+++.+|..+++-. .-+....-.|.+..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~ 131 (273)
T TIGR00932 84 VPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKT 131 (273)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccC
Confidence 33 44445556778999999999998877654 2333444455555443
No 34
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.19 E-value=0.14 Score=54.49 Aligned_cols=107 Identities=23% Similarity=0.237 Sum_probs=66.5
Q ss_pred HHHHHHHHHHH-HHHHHhC-----chHHHHHHHHHHHhcCC----CchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHh
Q 047751 376 LASVAFCLLVA-WCSDKLG-----LSLELGSFAAGVMISTT----DLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLW 445 (580)
Q Consensus 376 l~~l~l~l~~~-~lae~lG-----ls~~lGaFvaGl~l~~~----~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~ 445 (580)
+.++++|+..+ ++.+.++ +....+|++.|+++++. ...+-..+.++.+.++-+-+|.+..=|++.+-.+.
T Consensus 224 ~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~ 303 (404)
T COG0786 224 LAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELA 303 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34445554443 3444444 67889999999999985 11222345567778888888888887888777665
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHH
Q 047751 446 NHVDILLAA-VLLVIVVKTVVVATVIKGFRYSNKTSLL 482 (580)
Q Consensus 446 ~~~~~~l~~-vl~~~~~K~l~~~l~~~~~~~~~r~a~~ 482 (580)
+.+..++++ .+-..+.-+...++..|.+|.+...+..
T Consensus 304 ~l~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~ 341 (404)
T COG0786 304 DLALPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVL 341 (404)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 544333332 2333444556666777888877665544
No 35
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.14 E-value=0.031 Score=64.19 Aligned_cols=131 Identities=21% Similarity=0.282 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCchh-hHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHH
Q 047751 376 LASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQ-HTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAA 454 (580)
Q Consensus 376 l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~~~~~-~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~ 454 (580)
...++...+...++..+|+++++|=.++|+++...-++- .-.+.++.+.++-..++...+|+.+|++.++......+..
T Consensus 11 ~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~ 90 (621)
T PRK03562 11 LIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGG 90 (621)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 345566667788999999999999999999997642221 1134567778888888899999999999998654332222
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCh
Q 047751 455 VLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVE 508 (580)
Q Consensus 455 vl~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~ 508 (580)
-..-++.-.+..+..++++|.++..++.+|..++.-.. +++ ...-.+.+.++
T Consensus 91 g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SSt-aiv-~~~L~e~~~l~ 142 (621)
T PRK03562 91 GALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSST-AIA-MQAMNERNLMV 142 (621)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-HHH-HHHHHHhcccc
Confidence 22222222333445566788999999999987765543 333 33344444433
No 36
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=97.09 E-value=0.61 Score=50.68 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=72.7
Q ss_pred CchHHHHHHHHHHHhcCC----CchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHH-HHHH
Q 047751 393 GLSLELGSFAAGVMISTT----DLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKT-VVVA 467 (580)
Q Consensus 393 Gls~~lGaFvaGl~l~~~----~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~-l~~~ 467 (580)
.++...+|++.|+++.+. +..+...+.++.+.++.+-+|.+..=+.+++..+.+.+..++++.+.-++.-. ...+
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~f 323 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAIF 323 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999974 11122233556677888888888888888888888777665555444433333 4456
Q ss_pred HHHhhcCCChHHHHHHHHHHHh--HHHHHHHHHH---HHHhCCCChHHHHHHH
Q 047751 468 TVIKGFRYSNKTSLLVGMSLAQ--IGEFAFVLLS---RASNLHLVEGKLYLLL 515 (580)
Q Consensus 468 l~~~~~~~~~r~a~~lgl~L~~--rG~~~lvla~---~a~~~gii~~~~~~~l 515 (580)
+.-|.+|-+ .|+-.+..+..- .|...-.+++ .-.++|. +++-|.++
T Consensus 324 v~fr~mg~~-ydaaV~~ag~~G~~lGatptaianm~av~~~yg~-s~~af~iv 374 (398)
T TIGR00210 324 VTFRLMGKD-YDAAVLCAGHCGFGLGATPTAIANMQAVTERFGP-SHQAFIVV 374 (398)
T ss_pred HhHHhccch-HHHHHHhcccccccccchHHHHHHHHHHHhccCC-CCcceehh
Confidence 666777766 666553332222 1333333333 2334565 55555443
No 37
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.05 E-value=0.58 Score=49.62 Aligned_cols=97 Identities=15% Similarity=0.146 Sum_probs=69.4
Q ss_pred HhcCCcHHHHHHHHHHhhCcCCCCCCCc--h---H-HHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHHHH
Q 047751 176 ACAGQPVITGYLLAGSVIGPGGFSFVSE--M---V-QVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLF 249 (580)
Q Consensus 176 ~rl~lP~ivg~IlaGilLGPs~Lg~i~~--~---~-~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~~ll~ 249 (580)
+..+++.++--++.|+++|+......++ . + .-+.+-++|+++ .|.++++.++-+.+.+.+......+...
T Consensus 27 ~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~~v~~~ 102 (335)
T TIGR00698 27 ADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTLILTST 102 (335)
T ss_pred ccCCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHHHHHHH
Confidence 3468999999999999999854211111 1 1 234666777665 6999999999999998887777766666
Q ss_pred HHHHHHHH-HhcCCChHHHHHHHHHHhh
Q 047751 250 MCLCGIIA-SLCGGKPSEGVFVGVLLSM 276 (580)
Q Consensus 250 ~~l~~~~~-~~lg~~~~~al~ig~~ls~ 276 (580)
+..+..+. ..+|.+...+.++|+--|.
T Consensus 103 ~~~~~~~g~k~l~l~~~~~~Lia~GtsI 130 (335)
T TIGR00698 103 FFLTVFLGSSRLKLDKQMSILLGAGSSI 130 (335)
T ss_pred HHHHHHHHHHHhCCChhHHHHHHcchhH
Confidence 66666666 5788888777777655444
No 38
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.90 E-value=0.071 Score=61.05 Aligned_cols=132 Identities=15% Similarity=0.234 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCchh-hHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHH
Q 047751 376 LASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQ-HTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAA 454 (580)
Q Consensus 376 l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~~~~~-~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~ 454 (580)
...++...+...++..+|+++++|=.++|++++..-++- .-.+.++.+.++-..++...+|+++|++.++......+.+
T Consensus 11 ~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~ 90 (601)
T PRK03659 11 VLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGV 90 (601)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 344555566678889999999999999999997642221 1123466677888888888999999999987654322222
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChH
Q 047751 455 VLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEG 509 (580)
Q Consensus 455 vl~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~ 509 (580)
...-++.-.+..+...+..|+++..++.+|..++.-. .+++ ...-.+.+..+.
T Consensus 91 g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SS-Taiv-~~iL~e~~~~~t 143 (601)
T PRK03659 91 GAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSS-TAMA-LQLMREKGMNRS 143 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHH-HHHHHHcccccC
Confidence 1111111122222234456889988988887655433 2333 334445554443
No 39
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.072 Score=57.88 Aligned_cols=137 Identities=18% Similarity=0.159 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC--CchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHH-H
Q 047751 375 QLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT--DLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDI-L 451 (580)
Q Consensus 375 ~l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~--~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~-~ 451 (580)
....+..+.....+.+++|+++++|-.++|+++.+. ..-.+-.+.++-+.++=.-++...+|+.+|++.+++.... .
T Consensus 11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~ 90 (397)
T COG0475 11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVG 90 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhh
Confidence 345566677777999999999999999999999972 1222334455556666666667889999999999865443 2
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHH
Q 047751 452 LAAVLLVIVVKTVVVATVIK-GFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYL 513 (580)
Q Consensus 452 l~~vl~~~~~K~l~~~l~~~-~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~ 513 (580)
.......+..=++....... .+++++++++.+|..++.-+. -+.+..-.|.|..+.+.-.
T Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~ 151 (397)
T COG0475 91 LGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQ 151 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHH
Confidence 22222222222222211121 589999999999987766442 1233344455544444333
No 40
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=96.87 E-value=0.89 Score=48.93 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=56.8
Q ss_pred CchHHHHHHHHHHHhcCCC---chhhHH-HhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHH-HHHHHHHHHHHH
Q 047751 393 GLSLELGSFAAGVMISTTD---LAQHTL-EQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAV-LLVIVVKTVVVA 467 (580)
Q Consensus 393 Gls~~lGaFvaGl~l~~~~---~~~~l~-~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~v-l~~~~~K~l~~~ 467 (580)
.++...+|++.|+++.+.- ...++. +.++.+.++.+-+|.+..=+.+++..+.+....+++++ +-.++.=+...+
T Consensus 246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~f 325 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYF 325 (368)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999998731 111122 23455667777777666667778888876655444333 223333445566
Q ss_pred HHHhhcCCChHHHHHHHHH
Q 047751 468 TVIKGFRYSNKTSLLVGMS 486 (580)
Q Consensus 468 l~~~~~~~~~r~a~~lgl~ 486 (580)
+..|.+|.++ |+..++.+
T Consensus 326 v~fr~~gkdy-daavm~~G 343 (368)
T PF03616_consen 326 VTFRVMGKDY-DAAVMSAG 343 (368)
T ss_pred HhhhhhCCCh-hHHHHhhh
Confidence 6677888775 65555443
No 41
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.76 E-value=0.091 Score=59.59 Aligned_cols=133 Identities=16% Similarity=0.247 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCchh-hHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHH
Q 047751 378 SVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQ-HTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVL 456 (580)
Q Consensus 378 ~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~~~~~-~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl 456 (580)
++..+.++..++..++++.++|=.++|+++...-.+. +-.+.++.+.++-..++...+|+++|++.++..........+
T Consensus 14 ~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~ 93 (558)
T PRK10669 14 GLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAI 93 (558)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHH
Confidence 3455666778888999999999999999997653221 112446667777788888889999999988654322222111
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHH
Q 047751 457 LVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLY 512 (580)
Q Consensus 457 ~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~ 512 (580)
..++.-++.++...+.+++++.+++.+|..++.-+. .++...-.+.|.++.+.-
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~G 147 (558)
T PRK10669 94 AQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQRG 147 (558)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcch
Confidence 122222334444556778999999999987666332 344555566676665333
No 42
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.72 E-value=1 Score=47.39 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhccHHHHH
Q 047751 207 VETVAQFGVIFLLFALGLEFSTAKLRVVRA---VAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSSTAVVL 283 (580)
Q Consensus 207 le~la~lGli~llF~~GLeld~~~l~~~~~---~av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~TS~~Vv~ 283 (580)
.|.....++..+.|..|+.++.+++++..+ .....-...+++.=+++..+..+.+....+.+..|......-|..+.
T Consensus 29 ~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~ 108 (313)
T PF13593_consen 29 PEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLPPELALGLLILACLPTTVS 108 (313)
T ss_pred hhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhCCchhh
Confidence 457778888899999999999999986543 22222222222222334444444432223345555555443333222
Q ss_pred H-H-HhhhcccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047751 284 K-F-LMERNSISALHGQVTIGTLILQDCAVGLLFALL 318 (580)
Q Consensus 284 ~-i-L~e~~~~~s~~g~l~ls~avl~Dv~~~lllal~ 318 (580)
. + +... .+.+. ..++..+.+..+++.++.-+.
T Consensus 109 S~v~~T~~--AgGN~-a~Al~~~~~snllgv~ltP~l 142 (313)
T PF13593_consen 109 SSVVLTRL--AGGNV-ALALFNAVLSNLLGVFLTPLL 142 (313)
T ss_pred HHHHHHHH--cCCCH-HHHHHHHHHHhhhhHhHHHHH
Confidence 2 1 2222 22333 255666677777777665443
No 43
>COG2855 Predicted membrane protein [Function unknown]
Probab=96.47 E-value=1.5 Score=46.18 Aligned_cols=98 Identities=13% Similarity=0.172 Sum_probs=75.0
Q ss_pred HhcCCcHHHHHHHHHHhhCcCCCCCCCc----hHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHHHHHH
Q 047751 176 ACAGQPVITGYLLAGSVIGPGGFSFVSE----MVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMC 251 (580)
Q Consensus 176 ~rl~lP~ivg~IlaGilLGPs~Lg~i~~----~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~~ll~~~ 251 (580)
...++|..+--|+.||++|...-..-+. .-.-+.+-++|+++ .|.+++++++...+...+.+....+..+++
T Consensus 33 ~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~~v~~~~~~l~~t~~ 108 (334)
T COG2855 33 IHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVL----LGFRLTLSDIADVGGSGVLIIAITLSSTFL 108 (334)
T ss_pred hhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHH----HcceeeHHHHHHcCccHHHHHHHHHHHHHH
Confidence 3478999999999999999432111010 12456677788775 589999999999999988888877777888
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHhhc
Q 047751 252 LCGIIASLCGGKPSEGVFVGVLLSMS 277 (580)
Q Consensus 252 l~~~~~~~lg~~~~~al~ig~~ls~T 277 (580)
.+..++.++|.+...+.++|+--|..
T Consensus 109 ~~~~lg~~lgld~~~a~Lia~GssIC 134 (334)
T COG2855 109 FAYFLGKLLGLDKKLALLIAAGSSIC 134 (334)
T ss_pred HHHHHHHHhCCCHHHHHHHHccchhh
Confidence 88888888999999999988766654
No 44
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=96.47 E-value=0.036 Score=54.04 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=88.5
Q ss_pred HHHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChh-----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 047751 185 GYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTA-----KLRVVRAVAILGGLLQIFLFMCLCGIIASL 259 (580)
Q Consensus 185 g~IlaGilLGPs~Lg~i~~~~~le~la~lGli~llF~~GLeld~~-----~l~~~~~~av~ia~~~~ll~~~l~~~~~~~ 259 (580)
+.+++|+++|-..... ....+...+..+.+++|.+|+++--+ ++|+.+++++.+.+..++.+.+.+.+...+
T Consensus 3 ~~li~Gi~lG~~~~~~---~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~l 79 (191)
T PF03956_consen 3 IALILGILLGYFLRPP---FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLL 79 (191)
T ss_pred eeHHHHHHHHHHhccc---ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888643222 22338889999999999999998544 566677899999998888887777777888
Q ss_pred cCCChHHHHHHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047751 260 CGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFALL 318 (580)
Q Consensus 260 lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~lllal~ 318 (580)
++.++.+++.+++-..==| .....+.|. .+.++|.++.-+=++.+..++++.-++
T Consensus 80 l~~~~~~~lav~sG~GwYS--lsg~~i~~~--~~~~~G~iafl~n~~RE~~a~~~~P~~ 134 (191)
T PF03956_consen 80 LGLSLKESLAVASGFGWYS--LSGVLITQL--YGPELGTIAFLSNLFREILAIILIPLL 134 (191)
T ss_pred hcCCHHHHHHHHccCcHHH--hHHHHHHhh--hCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988888776543212 111233443 356788888777777777766655443
No 45
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.41 E-value=1.5 Score=45.51 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHHHhhh--HHHHHHHH-HH-HHHHHHHHHHHHhcCCChHHHHHHHHHHhhccH-HHH
Q 047751 208 ETVAQFGVIFLLFALGLEFSTAKLRVVRA--VAILGGLL-QI-FLFMCLCGIIASLCGGKPSEGVFVGVLLSMSST-AVV 282 (580)
Q Consensus 208 e~la~lGli~llF~~GLeld~~~l~~~~~--~av~ia~~-~~-ll~~~l~~~~~~~lg~~~~~al~ig~~ls~TS~-~Vv 282 (580)
..+.-..+.+.+|..|+.++.+++++..+ +....+.. .. +.|.+ ++.++.+++.+. ....|..+..+.| ++.
T Consensus 7 ~~~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pll-a~~l~~~~~l~~--~~~~glvL~~~~P~~~~ 83 (286)
T TIGR00841 7 STILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLT-GFLLAKVFKLPP--ELAVGVLIVGCCPGGTA 83 (286)
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHhCCCH--HHHHHHHheeeCCCchH
Confidence 33334448889999999999999988765 34433333 33 34543 455556666653 3445555444332 333
Q ss_pred HHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 047751 283 LKFLMERNSISALHGQVTIGTLILQDCAVGLLFA 316 (580)
Q Consensus 283 ~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~llla 316 (580)
+.++.+.-..|.+ ++.+...++-+.+.+...
T Consensus 84 s~v~t~~~~gn~~---la~~~~~~stlls~vt~P 114 (286)
T TIGR00841 84 SNVFTYLLKGDMA---LSISMTTCSTLLALGMMP 114 (286)
T ss_pred HHHHHHHhCCCHh---hhhHHHHHHHHHHHHHHH
Confidence 3445554333333 334444444555444443
No 46
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=96.23 E-value=0.69 Score=49.05 Aligned_cols=259 Identities=14% Similarity=0.096 Sum_probs=136.8
Q ss_pred hcCChhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhh------ccHHHHHHHHhh-hcccCcch
Q 047751 224 LEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSM------SSTAVVLKFLME-RNSISALH 296 (580)
Q Consensus 224 Leld~~~l~~~~~~av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~------TS~~Vv~~iL~e-~~~~~s~~ 296 (580)
+.+|.+.+.|...|-+...+.+++..++++..++.++|.++.++++.=..=-+ -..|. +..-++ .+...+++
T Consensus 40 L~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~~~~i~lPIm~GG~GaGavPL-S~~Y~~~~g~~~~~~ 118 (347)
T TIGR00783 40 LGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFDHSLMYIVMPIMAGGVGAGIVPL-SIIYSAITGRSSEEI 118 (347)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHhhheeeehhcCCCcccchhhH-HHHHHHHhCCCHHHH
Confidence 47888889888888777777777777778888889999988877764221111 11111 112221 12122223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----H--Hhhc--c
Q 047751 297 GQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKL----M--ISLS--S 368 (580)
Q Consensus 297 g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~----~--~~~~--~ 368 (580)
-..++.+.++..+++++.-+++--+......+++... +.+. . ++++ +
T Consensus 119 ~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~G~-------------------------L~~~~~~~~~~~~~~~~~ 173 (347)
T TIGR00783 119 FSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGE-------------------------LVRSEKREDAEKAKEITE 173 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCce-------------------------EeecCCcchhhhcccccc
Confidence 3334445555555554444333222111000000000 0000 0 0000 0
Q ss_pred ---CcchHHHHHHHHHHH-HHHHHHHHh-CchHHHHHHHHHHHhcCCC-chhhHHHhHHhHHHHH----HHHHHHHHhhh
Q 047751 369 ---QTNELYQLASVAFCL-LVAWCSDKL-GLSLELGSFAAGVMISTTD-LAQHTLEQVEPIRNFF----AALFLASIGML 438 (580)
Q Consensus 369 ---~~~e~~~l~~l~l~l-~~~~lae~l-Gls~~lGaFvaGl~l~~~~-~~~~l~~~l~~i~~~f----~plFFv~iGl~ 438 (580)
..++.-.-+.++.++ ..+.+.+.+ ++|+..-+.+.|+++.... ..++++++......|+ .+..++-+|+.
T Consensus 174 ~~~~~~~~g~Gl~~a~~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla 253 (347)
T TIGR00783 174 IKIDVKLMGSGVLFAVALFMAGGLLKSFPGIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVS 253 (347)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 001111111122221 111122233 6788888999999888653 3455666655544332 33334455766
Q ss_pred -hhHHhHhHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCC-ChHHHHHHHHHHHhHHHH-HHHHHHHHHhCCCCh
Q 047751 439 -IHVHFLWNHV-DILLAAVLLVIVVKTVVVATVIKGFRY-SNKTSLLVGMSLAQIGEF-AFVLLSRASNLHLVE 508 (580)
Q Consensus 439 -id~~~l~~~~-~~~l~~vl~~~~~K~l~~~l~~~~~~~-~~r~a~~lgl~L~~rG~~-~lvla~~a~~~gii~ 508 (580)
+|++.+.+.. +..+.+++..+++=.++++++.|+.|+ |...++..|+.|+.+|.. ++.+++.+.+.+++.
T Consensus 254 ~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 254 YIDLDDLVAALSWQFVVICLSVVVAMILGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred cCCHHHHHHHhchhHhhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 7888877655 344555566677788889999999985 555567778888877553 455666666666554
No 47
>PRK05326 potassium/proton antiporter; Reviewed
Probab=96.18 E-value=0.16 Score=57.79 Aligned_cols=127 Identities=15% Similarity=0.111 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCchh---hHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHH
Q 047751 377 ASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQ---HTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLA 453 (580)
Q Consensus 377 ~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~~~~~---~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~ 453 (580)
..+.++.++..+++.+|++..++-.++|+++.....+. .-.+..+.+.++.+++.....|+++|++.+...+...+.
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~ 92 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALS 92 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHH
Confidence 34455556678888999999999999999998753221 112345667889999999999999999998876654433
Q ss_pred HHHH-HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCC
Q 047751 454 AVLL-VIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLH 505 (580)
Q Consensus 454 ~vl~-~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~g 505 (580)
+... +.+.=.+.++...+.++.++.+++.+|..+++-... +....-.+.+
T Consensus 93 la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a--~v~~iL~~~~ 143 (562)
T PRK05326 93 LATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA--AVFSLLRGKG 143 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH--HHHHHHhccC
Confidence 3222 222223334455567899999999999877665433 2333444555
No 48
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.04 E-value=0.67 Score=47.99 Aligned_cols=248 Identities=11% Similarity=0.117 Sum_probs=125.6
Q ss_pred HHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCh--------HHHHHHHHHHhhccHHHHHHHH
Q 047751 215 VIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCGGKP--------SEGVFVGVLLSMSSTAVVLKFL 286 (580)
Q Consensus 215 li~llF~~GLeld~~~l~~~~~~av~ia~~~~ll~~~l~~~~~~~lg~~~--------~~al~ig~~ls~TS~~Vv~~iL 286 (580)
+..++|..|-++|++...+.-+|...+-..-+.+.++++.++..++|.+- ...+.+-++.+.|.-..=..+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 45678899999999987777666655555556666666666777776431 1233333444445555555666
Q ss_pred hhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 047751 287 MERNSISALHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISL 366 (580)
Q Consensus 287 ~e~~~~~s~~g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~ 366 (580)
.|++. ++|.|-..+ ..++| ++ ++..+.+ ..-+.--+||
T Consensus 131 ~qyGd-~~D~gA~~i--~sl~~-----------------GP----------f~TMi~L----G~sGlA~ip~-------- 168 (314)
T TIGR00793 131 QQYGT-KEEAGAFVL--MSLES-----------------GP----------LMTMVIL----GTAGIASFEP-------- 168 (314)
T ss_pred HHcCC-Hhhhhhhhh--hhhcc-----------------Cc----------HHHHHHH----hhccCCCCCH--------
Confidence 66653 233332211 11222 11 0000000 0000000000
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhH
Q 047751 367 SSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWN 446 (580)
Q Consensus 367 ~~~~~e~~~l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~ 446 (580)
...+ ..+=+++.|+++.|-+ +++.+-+.+-.....|+|-...|..+|++.+++
T Consensus 169 ---------~~lv----------------~~ilPlliG~ilGNLD--~~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~ 221 (314)
T TIGR00793 169 ---------HVFV----------------GAVLPFLVGFALGNLD--PELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQ 221 (314)
T ss_pred ---------HHHH----------------HHHHHHHHHHHHhcCC--HHHHHHhccCCCeeeehhhhhhcCCCCHHHHHH
Confidence 0001 1233667788887753 445555666667899999999999999998875
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHhhcC-CChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHHH
Q 047751 447 HV--DILLAAVLLVIVVKTVVVATVIKGFR-YSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLG-TTALS 522 (580)
Q Consensus 447 ~~--~~~l~~vl~~~~~K~l~~~l~~~~~~-~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~-~vllS 522 (580)
.- ++++.+ ...+.--...++.-|+.+ -+..-.+..|-.-+.--....+++..--+.... .+..+..+. ++++|
T Consensus 222 aGl~GIlLGl--~v~~vtG~~~~~~dr~~~g~~g~aG~A~sstAGnAvatPaavA~adPs~~~~-a~~ATaqvAaavivT 298 (314)
T TIGR00793 222 TGLLGILLGV--SVIILTGIPLILADKFIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPV-APAATALVATSVIVT 298 (314)
T ss_pred hCcchHHHHH--HHHHHHhHHHHHHHHHhcCCCCchhhHHHHHHHHhhhhHHHHHHhChhhhhh-HHHHHHHHHHHHHHH
Confidence 42 233222 122223344555566553 232233333321111111112222221122221 233344443 57789
Q ss_pred HHHHHHHHHhhh
Q 047751 523 LVTTPLLFKLIP 534 (580)
Q Consensus 523 ~l~~Pll~~l~p 534 (580)
.++.|++..++.
T Consensus 299 aiL~Pilta~~~ 310 (314)
T TIGR00793 299 SLLVPIATVWWS 310 (314)
T ss_pred HHHHHHHHHHHH
Confidence 999999988864
No 49
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.00 E-value=0.23 Score=59.01 Aligned_cols=137 Identities=16% Similarity=0.157 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCCCCchHHHHHH-HHHHHHHHHHHHhhcCChhHHHHhh--hHHHHHHH
Q 047751 167 SATCGGIAFACAGQPVITGYLLAGSVIGPGGFSFVSEMVQVETV-AQFGVIFLLFALGLEFSTAKLRVVR--AVAILGGL 243 (580)
Q Consensus 167 ~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~i~~~~~le~l-a~lGli~llF~~GLeld~~~l~~~~--~~av~ia~ 243 (580)
.....+++...+|+..++|-.++|+++...-++. .-.+-++.+ ..+-+.++...+|+++|+..+.... ..++.+.+
T Consensus 280 ~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~-~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv 358 (832)
T PLN03159 280 GVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGV-TLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVII 358 (832)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHhhccCCcchHH-HHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHH
Confidence 3345567788999999999999999987321110 012334444 3455666777789999998875322 11222222
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhccH--HHHHHHHhhhcccCcchHHHHHHHH
Q 047751 244 LQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSST--AVVLKFLMERNSISALHGQVTIGTL 304 (580)
Q Consensus 244 ~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~TS~--~Vv~~iL~e~~~~~s~~g~l~ls~a 304 (580)
+.++.=++.+++.+.++|.++.+++.+|..++.-.. -+++.+-.+.+.++.+.-..++-.+
T Consensus 359 ~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~a 421 (832)
T PLN03159 359 MASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVA 421 (832)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHHH
Confidence 222223334455567889999999999999988542 2244555566666555544443333
No 50
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=95.78 E-value=0.4 Score=46.37 Aligned_cols=101 Identities=20% Similarity=0.281 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhcCChhHHHHhhhHH--HHHH-HHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHhhccH-HHHHHHHh
Q 047751 213 FGVIFLLFALGLEFSTAKLRVVRAVA--ILGG-LLQIFLFMCLCGIIA-SLCGGKPSEGVFVGVLLSMSST-AVVLKFLM 287 (580)
Q Consensus 213 lGli~llF~~GLeld~~~l~~~~~~a--v~ia-~~~~ll~~~l~~~~~-~~lg~~~~~al~ig~~ls~TS~-~Vv~~iL~ 287 (580)
+.+.+.+|..|++++++++++..|+. +..+ +.+.++.=.+++.+. .+++.+. ....|..+...+| +..+....
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~--~~~~Gl~l~~~~P~~~~s~~~t 79 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSP--ALALGLLLVAACPGGPASNVFT 79 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--H--HHHHHHHHHHHS-B-THHHHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHhcCCcHHHHHHHH
Confidence 45788999999999999999776543 2222 333333223444444 4444443 3455555444333 23444444
Q ss_pred hhcccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047751 288 ERNSISALHGQVTIGTLILQDCAVGLLFALL 318 (580)
Q Consensus 288 e~~~~~s~~g~l~ls~avl~Dv~~~lllal~ 318 (580)
++. +.+.. +..+...++.+.+.+..-+.
T Consensus 80 ~l~--~Gd~~-ls~~lt~istll~~~~~P~~ 107 (187)
T PF01758_consen 80 YLA--GGDVA-LSVSLTLISTLLAPFLMPLL 107 (187)
T ss_dssp HHT--T--HH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHh--CCCcc-cccceeeHHHHHHHHHHHHH
Confidence 443 22222 44555556665555554433
No 51
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=95.69 E-value=3.5 Score=43.64 Aligned_cols=98 Identities=14% Similarity=0.091 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhcCChhHHHHhhhH---HHHHHHHHHH-HHHHHHHHHHHh-cCCChHHHHHHHHHHhhccHHH-HHHHH
Q 047751 213 FGVIFLLFALGLEFSTAKLRVVRAV---AILGGLLQIF-LFMCLCGIIASL-CGGKPSEGVFVGVLLSMSSTAV-VLKFL 286 (580)
Q Consensus 213 lGli~llF~~GLeld~~~l~~~~~~---av~ia~~~~l-l~~~l~~~~~~~-lg~~~~~al~ig~~ls~TS~~V-v~~iL 286 (580)
++++++||..|++++++++++..|+ ....-+.+++ .|. +++.+++. ++.++ .+.+|..+..+.|.. .+.+.
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl-la~~l~~l~~~~~p--~l~~GliLv~~~Pgg~~S~v~ 123 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF-LMFLLAWLFLRDLF--EYIAGLILLGLARCIAMVFVW 123 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHcCCCH--HHHHHHHHHHhcchHHHHHHH
Confidence 4666899999999999999876543 3333334443 353 44445544 35543 366777766555433 33444
Q ss_pred hhhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 047751 287 MERNSISALHGQVTIGTLILQDCAVGLLFA 316 (580)
Q Consensus 287 ~e~~~~~s~~g~l~ls~avl~Dv~~~llla 316 (580)
.... +.+.. +.++...++-+.+.++..
T Consensus 124 T~lA--kGnva-lsv~lt~~stLl~~~~~P 150 (328)
T TIGR00832 124 NQLA--KGDPE-YTLVLVAVNSLFQVFLYA 150 (328)
T ss_pred HHHc--CCCHH-HHHHHHHHHHHHHHHHHH
Confidence 4443 33333 444445566666555543
No 52
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.69 E-value=0.38 Score=50.35 Aligned_cols=153 Identities=14% Similarity=0.135 Sum_probs=93.7
Q ss_pred HHHHHHHHHHH----HhCchHHHHHHHHHHHhcC-C-CchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHH
Q 047751 380 AFCLLVAWCSD----KLGLSLELGSFAAGVMIST-T-DLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLA 453 (580)
Q Consensus 380 ~l~l~~~~lae----~lGls~~lGaFvaGl~l~~-~-~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~ 453 (580)
++.....++++ ..++++.+=|.+.|+.++| . ...++...-++.....++.+=-+..|.+++++.+.+.....+.
T Consensus 8 ~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~ 87 (305)
T PF03601_consen 8 AIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKGLL 87 (305)
T ss_pred HHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccHHH
Confidence 33334444444 4578888999999999998 4 3334444445544567788778899999999988754332233
Q ss_pred HHHHHHHHHHHHHHHHH-hhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHH--HHHHHHHHHHHHH
Q 047751 454 AVLLVIVVKTVVVATVI-KGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLG--TTALSLVTTPLLF 530 (580)
Q Consensus 454 ~vl~~~~~K~l~~~l~~-~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~--~vllS~l~~Pll~ 530 (580)
..++.+..-+..++... |.+|+|++.+..++.+.+.=|.-+.+-..-..+.+- ++..|++... --.+..++-|++.
T Consensus 88 ~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~-~~~a~ava~V~lfg~vam~~~P~l~ 166 (305)
T PF03601_consen 88 IIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKE-EDVAYAVATVFLFGTVAMFLYPLLG 166 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCC-CceeeeehHHHHHHHHHHHHHHHHH
Confidence 33333333444444444 999999999999999877777655554444444332 2222222221 2234556677777
Q ss_pred Hhh
Q 047751 531 KLI 533 (580)
Q Consensus 531 ~l~ 533 (580)
.+.
T Consensus 167 ~~l 169 (305)
T PF03601_consen 167 HAL 169 (305)
T ss_pred HHh
Confidence 765
No 53
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=95.61 E-value=0.34 Score=45.58 Aligned_cols=102 Identities=21% Similarity=0.272 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhcCCc--HHHHHHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHH
Q 047751 164 VIVSATCGGIAFACAGQP--VITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILG 241 (580)
Q Consensus 164 il~~a~l~~~l~~rl~lP--~ivg~IlaGilLGPs~Lg~i~~~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~i 241 (580)
.+..+.+++++++++|+| .++|.++++.++.-.+... ...-+.+.+++.+++=-.+|.+++.+.+++..+.....
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~---~~~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLE---ITLPPWLLALAQVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCcc---CCCCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 455778888999999988 7788888888776332111 22334555566666777999999999988776644322
Q ss_pred H---HHHHHHHHHHHHHHHHhcCCChHHHH
Q 047751 242 G---LLQIFLFMCLCGIIASLCGGKPSEGV 268 (580)
Q Consensus 242 a---~~~~ll~~~l~~~~~~~lg~~~~~al 268 (580)
. .......++.+..+.++.|.+...++
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~ 109 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAF 109 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 2 22222233333334455677776654
No 54
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=95.52 E-value=0.28 Score=55.33 Aligned_cols=117 Identities=18% Similarity=0.160 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCCchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHH-
Q 047751 378 SVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVL- 456 (580)
Q Consensus 378 ~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl- 456 (580)
.++.+.....+++.++++..++-.++|++++..+......-.-+.+..+++|......|+++|.+.++.++..+..+.+
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~ 85 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFL 85 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3444455567788889999999999999987543221110011223458899999999999999999877654433332
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHH
Q 047751 457 LVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFA 494 (580)
Q Consensus 457 ~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~ 494 (580)
.+++.-.++++...+..++|+..++.+|..+++-.-..
T Consensus 86 ~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpva 123 (525)
T TIGR00831 86 LVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVA 123 (525)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHH
Confidence 33333334444444467899999999999888877554
No 55
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.43 E-value=0.27 Score=46.96 Aligned_cols=111 Identities=20% Similarity=0.279 Sum_probs=78.3
Q ss_pred HhcCCcHHHHHHHHHHhhCcCCCC--CCCchHHHHHHHHHHHHHHHHHHhhcCChhH---HHHhhhHHHHHHHHHHHHHH
Q 047751 176 ACAGQPVITGYLLAGSVIGPGGFS--FVSEMVQVETVAQFGVIFLLFALGLEFSTAK---LRVVRAVAILGGLLQIFLFM 250 (580)
Q Consensus 176 ~rl~lP~ivg~IlaGilLGPs~Lg--~i~~~~~le~la~lGli~llF~~GLeld~~~---l~~~~~~av~ia~~~~ll~~ 250 (580)
+++++-...|-+++|+++|-..-. ...+....+.+.++|+.++++.+|++--++- +|+.+.+....++.-..++.
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~ 98 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPL 98 (169)
T ss_pred cceeccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 456666777999999999864210 1135567889999999999999999988774 45566667777777777787
Q ss_pred HHHHHHHH-hcCCChHHHHHHHHHH-hhccHHHHHHHHhh
Q 047751 251 CLCGIIAS-LCGGKPSEGVFVGVLL-SMSSTAVVLKFLME 288 (580)
Q Consensus 251 ~l~~~~~~-~lg~~~~~al~ig~~l-s~TS~~Vv~~iL~e 288 (580)
+++....+ +++.++ ....|... +.|++|......+.
T Consensus 99 ~~~~~~~~~~~~l~~--~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 99 LIALVIGRYLFKLNP--GIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHcCCCH--HHHHHHHHccccCcHHHHHHHHh
Confidence 77777776 777764 34445444 45787777665444
No 56
>PRK03818 putative transporter; Validated
Probab=95.38 E-value=0.26 Score=55.88 Aligned_cols=103 Identities=19% Similarity=0.312 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhCcCC--CCCCCchHHHHHHHHHHHHHHHHHHhhcCChhHH---HHhhhHHHHHHHHHHHHHHHHHHHHH
Q 047751 183 ITGYLLAGSVIGPGG--FSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKL---RVVRAVAILGGLLQIFLFMCLCGIIA 257 (580)
Q Consensus 183 ivg~IlaGilLGPs~--Lg~i~~~~~le~la~lGli~llF~~GLeld~~~l---~~~~~~av~ia~~~~ll~~~l~~~~~ 257 (580)
+.|-+++|+++|-.. ++..-+....+.+.++|+.+++|.+|++--+.-+ |+.+.+...++++.++.+.+++..+.
T Consensus 33 ~~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~ 112 (552)
T PRK03818 33 IGGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILH 112 (552)
T ss_pred cHHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999621 2322245567779999999999999999998855 45555666677776677777766667
Q ss_pred HhcCCChHHHHHHHHHH-hhccHHHHHHHHh
Q 047751 258 SLCGGKPSEGVFVGVLL-SMSSTAVVLKFLM 287 (580)
Q Consensus 258 ~~lg~~~~~al~ig~~l-s~TS~~Vv~~iL~ 287 (580)
++++.++. ...|++. +.||+|.......
T Consensus 113 ~~~~~~~~--~~~G~~aGa~T~tp~l~aa~~ 141 (552)
T PRK03818 113 KLFGIPLP--VMLGIFSGAVTNTPALGAGQQ 141 (552)
T ss_pred HHhCCCHH--HHHHHhhccccccHHHHHHHH
Confidence 77887753 4444443 4577777666544
No 57
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.24 E-value=0.4 Score=50.33 Aligned_cols=136 Identities=12% Similarity=0.088 Sum_probs=88.9
Q ss_pred HHHHHhCchHHHHHHHHHHHhcCCC-chhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHH
Q 047751 387 WCSDKLGLSLELGSFAAGVMISTTD-LAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVV 465 (580)
Q Consensus 387 ~lae~lGls~~lGaFvaGl~l~~~~-~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~ 465 (580)
...+..|+++..=|.+.|++++..+ .+++...-++--...++.+=-+..|++++++.+.+.-.-.+.+....+..-++.
T Consensus 30 ~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~ 109 (334)
T COG2855 30 FFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAITLSSTFLF 109 (334)
T ss_pred HHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 3445667778889999999998543 333333444444567777778889999999988654333445555666677788
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 047751 466 VATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLV 524 (580)
Q Consensus 466 ~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~vllS~l 524 (580)
++...+++|+|++.++.+|.+-+-=|.-++...+- -.+--++|+-..+..+++++++
T Consensus 110 ~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~p--vika~~~eva~aIa~V~lfgti 166 (334)
T COG2855 110 AYFLGKLLGLDKKLALLIAAGSSICGASAIAATAP--VIKAEEEEVAVAIAVVVLFGTL 166 (334)
T ss_pred HHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCC--cCCCCccccceehhhHHHHHHH
Confidence 88888899999999999998766666443333222 1233344554444444555443
No 58
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=95.08 E-value=0.2 Score=56.86 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=76.6
Q ss_pred hcCCcHHHHHHHHHHhhCcCCC-CCC---CchHHHHHHHHHHHHHHHHHHhhcCChhH---HHHhhhHHHHHHHHHHHHH
Q 047751 177 CAGQPVITGYLLAGSVIGPGGF-SFV---SEMVQVETVAQFGVIFLLFALGLEFSTAK---LRVVRAVAILGGLLQIFLF 249 (580)
Q Consensus 177 rl~lP~ivg~IlaGilLGPs~L-g~i---~~~~~le~la~lGli~llF~~GLeld~~~---l~~~~~~av~ia~~~~ll~ 249 (580)
++.+-...|-+++|+++|-.+- +.. -+......+.++|+.++++.+|++--++- +++.+.+....+++-+++|
T Consensus 412 p~~lg~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~ 491 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILP 491 (562)
T ss_pred ceeehhhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445566799999999986421 111 23446778999999999999999988774 4555666667777777778
Q ss_pred HHHHHHHH-HhcCCChHHHHHHHHH-HhhccHHHHHHHHhh
Q 047751 250 MCLCGIIA-SLCGGKPSEGVFVGVL-LSMSSTAVVLKFLME 288 (580)
Q Consensus 250 ~~l~~~~~-~~lg~~~~~al~ig~~-ls~TS~~Vv~~iL~e 288 (580)
.+++..++ ++++.++. ...|.+ =+.|++|........
T Consensus 492 ~~~~~~~~~~~~~~~~~--~~~G~~aG~~t~t~~l~~a~~~ 530 (562)
T TIGR03802 492 LIITMLIGKYVLKYDPA--LLLGALAGARTATPALGAVLER 530 (562)
T ss_pred HHHHHHHHHHHhCCCHH--HHHHHhhccCCCcHHHHHHHHh
Confidence 77777776 67777654 455544 466888887665443
No 59
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=94.84 E-value=1.7 Score=45.89 Aligned_cols=131 Identities=8% Similarity=-0.009 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCCCchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 047751 399 GSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNK 478 (580)
Q Consensus 399 GaFvaGl~l~~~~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~~~~~~r 478 (580)
.+++.|..+.+- .+.+.+..++=.++++|++-...|.++|++.+...-....++.+..++......+...|+++.+..
T Consensus 178 lplliG~~lgnl--~~~l~~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~~~~~g 255 (326)
T PRK05274 178 LPLLVGFILGNL--DPELRQFLGKAVPVLIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLIGGGNG 255 (326)
T ss_pred HHHHHHHHHHhH--HHhhHHHhcCCcEEEHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhheeecCCC
Confidence 677778777762 222223333323568999988999999998876432222222223333444545555577744322
Q ss_pred ---HHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047751 479 ---TSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI 533 (580)
Q Consensus 479 ---~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~vllS~l~~Pll~~l~ 533 (580)
.+...+.+-+.-|-. .+ +...-..+...++.-..+-.++++|.+..|++..+.
T Consensus 256 ~~g~a~~ttaG~aic~pA-Av-aa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~ 311 (326)
T PRK05274 256 VAGAAAGSTAGNAVATPA-AV-AAADPSFAPFAPAATAQVAAAVIVTAILAPILTAWW 311 (326)
T ss_pred cchHHHHHHHHHHHHHHH-HH-HhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221211211 11 111112222333333333345667999999998865
No 60
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.67 E-value=1.4 Score=46.83 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=69.7
Q ss_pred hCchHHHHHHHHHHHhcCCC---chhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHH-HH
Q 047751 392 LGLSLELGSFAAGVMISTTD---LAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVV-VA 467 (580)
Q Consensus 392 lGls~~lGaFvaGl~l~~~~---~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~-~~ 467 (580)
.++++.+=+.+.|+++.|.. ..++...-++-....++-+=-+..|++++++.+.......+...+..+..-+.. .+
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~ 108 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVF 108 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 47888888999999998842 222222223323345666667889999999988654333333333334444454 44
Q ss_pred HHHhhcCCChHHHHHHHHHHHhHHHHHHHHHH
Q 047751 468 TVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLS 499 (580)
Q Consensus 468 l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~ 499 (580)
+..|.+|++++.+..+|.+-+-=|.-+.+-.+
T Consensus 109 ~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a 140 (335)
T TIGR00698 109 LGSSRLKLDKQMSILLGAGSSICGAAAVAAIE 140 (335)
T ss_pred HHHHHhCCChhHHHHHHcchhHHHHHHHHHhc
Confidence 44589999999999999887766755544443
No 61
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=94.46 E-value=0.45 Score=55.51 Aligned_cols=108 Identities=14% Similarity=0.177 Sum_probs=66.6
Q ss_pred HHHHHHHHhCchHHHHHHHHHHHhcCCCc--------hhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHH
Q 047751 384 LVAWCSDKLGLSLELGSFAAGVMISTTDL--------AQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAV 455 (580)
Q Consensus 384 ~~~~lae~lGls~~lGaFvaGl~l~~~~~--------~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~v 455 (580)
+..++.+.+.++..+-+.++|+++..... +..-...++ +..+.+++-....|++++...++..|.....++
T Consensus 28 ~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~le-IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl 106 (810)
T TIGR00844 28 VSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLE-ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLL 106 (810)
T ss_pred HHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHH
Confidence 33444444555555555555555543211 100011223 677888888899999999999988887655444
Q ss_pred HHHHHHHHHHHHHHHh-h-cCCChHHHHHHHHHHHhHHH
Q 047751 456 LLVIVVKTVVVATVIK-G-FRYSNKTSLLVGMSLAQIGE 492 (580)
Q Consensus 456 l~~~~~K~l~~~l~~~-~-~~~~~r~a~~lgl~L~~rG~ 492 (580)
+.....-++++.+..+ + .++++..++.+|..+++-.-
T Consensus 107 ~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDP 145 (810)
T TIGR00844 107 VPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDP 145 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcH
Confidence 4444444444444444 3 48999999999998887553
No 62
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=94.37 E-value=0.75 Score=48.50 Aligned_cols=105 Identities=21% Similarity=0.256 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhh
Q 047751 159 SDLVVVIVSATCGGIAFACAGQPV--ITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRA 236 (580)
Q Consensus 159 ~~l~lil~~a~l~~~l~~rl~lP~--ivg~IlaGilLGPs~Lg~i~~~~~le~la~lGli~llF~~GLeld~~~l~~~~~ 236 (580)
.++.+++..+..++++++++|+|. ++|-++++.++.-.+.....-+..+..++++ ++=-.+|.+++.+.+|+.+|
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~~~aqv---~iG~~iG~~f~~~~l~~~~~ 231 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLVNAAQV---LIGASIGSRFTRETLRELRR 231 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH---HHHHHHHccccHHHHHHHHH
Confidence 456777778899999999988774 5788888777765533223334455555554 45558999999999988776
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHhcCCChHHH
Q 047751 237 VAILGGLLQIFLFMCLC----GIIASLCGGKPSEG 267 (580)
Q Consensus 237 ~av~ia~~~~ll~~~l~----~~~~~~lg~~~~~a 267 (580)
....... ..+..+..+ ..+.++.|.++..+
T Consensus 232 ~~~~~l~-~~~~~l~~~~~~a~~l~~~~~~~~~t~ 265 (318)
T PF05145_consen 232 LLPPALL-STLLLLALCALFAWLLSRLTGIDFLTA 265 (318)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4433322 222222333 33344556665443
No 63
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=94.09 E-value=0.47 Score=53.97 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhh---
Q 047751 161 LVVVIVSATCGGIAF-ACAGQPVITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRA--- 236 (580)
Q Consensus 161 l~lil~~a~l~~~l~-~rl~lP~ivg~IlaGilLGPs~Lg~i~~~~~le~la~lGli~llF~~GLeld~~~l~~~~~--- 236 (580)
+.+++.+.+.+|.+- +.+++-.+.|-+++|+++|-.+.. .-+.+.++|+.+++|.+|++.-+.-++..++
T Consensus 15 lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~------i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~ 88 (562)
T TIGR03802 15 LFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ------IDPGVKAVFFALFIFAIGYEVGPQFFASLKKDGL 88 (562)
T ss_pred HHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC------CChHHHHHHHHHHHHHhhhccCHHHHHHHHhccH
Confidence 333444444444332 346677788999999999975442 2223667999999999999999987654444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChH
Q 047751 237 VAILGGLLQIFLFMCLCGIIASLCGGKPS 265 (580)
Q Consensus 237 ~av~ia~~~~ll~~~l~~~~~~~lg~~~~ 265 (580)
+....++..++...+++..+.+++|.+..
T Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~g~~~~ 117 (562)
T TIGR03802 89 REIILALVFAVSGLITVYALAKIFGLDKG 117 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 44445554444444455556677888653
No 64
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=94.00 E-value=0.36 Score=51.92 Aligned_cols=93 Identities=10% Similarity=0.084 Sum_probs=70.5
Q ss_pred hcCCcHHHHHHHHHHhhCcCC--CCCC-CchHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHHHHHHHH
Q 047751 177 CAGQPVITGYLLAGSVIGPGG--FSFV-SEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLC 253 (580)
Q Consensus 177 rl~lP~ivg~IlaGilLGPs~--Lg~i-~~~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~~ll~~~l~ 253 (580)
.+.+|..++.+++|+++-... ++.. -+.+.++.++++.+-+++..+=+.+++..+.+..-+.+.+-+++.++..+.+
T Consensus 244 ~~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~ 323 (368)
T PF03616_consen 244 GLTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFA 323 (368)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999987532 1111 1456799999999999998888899999999998888777777777665555
Q ss_pred HHH-HHhcCCChHHHHH
Q 047751 254 GII-ASLCGGKPSEGVF 269 (580)
Q Consensus 254 ~~~-~~~lg~~~~~al~ 269 (580)
..+ ...+|.++..++.
T Consensus 324 ~fv~fr~~gkdydaavm 340 (368)
T PF03616_consen 324 YFVTFRVMGKDYDAAVM 340 (368)
T ss_pred HHHhhhhhCCChhHHHH
Confidence 443 4578888755553
No 65
>PRK04972 putative transporter; Provisional
Probab=93.40 E-value=0.53 Score=53.46 Aligned_cols=126 Identities=14% Similarity=0.214 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHh-----cCCcHHHHHHHHHHhhCcCCCCCCC------chHHHHHHHHHHHHHHHHHHhhcCC
Q 047751 159 SDLVVVIVSATCGGIAFAC-----AGQPVITGYLLAGSVIGPGGFSFVS------EMVQVETVAQFGVIFLLFALGLEFS 227 (580)
Q Consensus 159 ~~l~lil~~a~l~~~l~~r-----l~lP~ivg~IlaGilLGPs~Lg~i~------~~~~le~la~lGli~llF~~GLeld 227 (580)
..+.+-+++..++|.+-=+ +++-.--|.+++|+++|-. +... +.....++.++|+.+++..+|+.--
T Consensus 384 ~~~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~--~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG 461 (558)
T PRK04972 384 LAFCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFL--RANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAG 461 (558)
T ss_pred HHHHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhc--cccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhh
Confidence 3445555555555554433 3344456899999999952 2221 3456889999999999999999877
Q ss_pred hhH---HHHhhhHHHHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHH-HhhccHHHHHHHHhh
Q 047751 228 TAK---LRVVRAVAILGGLLQIFLFMCLCGIIA-SLCGGKPSEGVFVGVL-LSMSSTAVVLKFLME 288 (580)
Q Consensus 228 ~~~---l~~~~~~av~ia~~~~ll~~~l~~~~~-~~lg~~~~~al~ig~~-ls~TS~~Vv~~iL~e 288 (580)
.+- +++.+...+..+.+..++|.+++..++ ++++.++. ..+|++ =+.|++|...-....
T Consensus 462 ~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~--~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 462 SGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRA--LLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHhCCCCCcHHHHHHHhh
Confidence 654 455566777777777778877777777 67777764 455544 466888777655433
No 66
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=93.29 E-value=15 Score=40.11 Aligned_cols=329 Identities=19% Similarity=0.177 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHh---hCcCCC---CCCCchHHHHHHHHH------HHHHH-HHHHh
Q 047751 157 LISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSV---IGPGGF---SFVSEMVQVETVAQF------GVIFL-LFALG 223 (580)
Q Consensus 157 li~~l~lil~~a~l~~~l~~rl~lP~ivg~IlaGil---LGPs~L---g~i~~~~~le~la~l------Gli~l-lF~~G 223 (580)
++-.+.++.+.+.+++++=+| +|.+=-|+=+|.+ ++|+.+ |++++ ..++.+.++ --.|+ ....|
T Consensus 30 m~g~~a~~~v~G~~l~~IG~r--iPi~k~yiGGg~il~~f~ps~Lv~~~~ip~-~~~~~v~~fm~~~~Fl~ffIa~LI~G 106 (414)
T PF03390_consen 30 MIGGFAVMMVLGFLLGEIGDR--IPILKDYIGGGAILCIFVPSALVYFGLIPE-SVVEAVTNFMKGSNFLYFFIAALIVG 106 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ChhhhccCChHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHhccCChHHHHHHHHHHh
Confidence 346666667777777766654 3434344444432 345543 45543 233333222 11111 22334
Q ss_pred --hcCChhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhh------ccHHHHHHHHhh-hcccCc
Q 047751 224 --LEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSM------SSTAVVLKFLME-RNSISA 294 (580)
Q Consensus 224 --Leld~~~l~~~~~~av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~------TS~~Vv~~iL~e-~~~~~s 294 (580)
+.+|.+.+.|...|-+...+.+.+..++++...+.++|.++.++++.=..=-+ -..|. +..-.| .+...+
T Consensus 107 SILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPL-S~~Ya~~~g~~~~ 185 (414)
T PF03390_consen 107 SILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPL-SQIYAEALGQDAE 185 (414)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHH-HHHHHHHhCCCHH
Confidence 47899999998888877777777888888888899999998887765332111 11121 112222 122233
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhccC---cc
Q 047751 295 LHGQVTIGTLILQDCAVGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISLSSQ---TN 371 (580)
Q Consensus 295 ~~g~l~ls~avl~Dv~~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~~~~---~~ 371 (580)
++-..++.+.++..+++++.-+++--+......+++...+.+. --. ... -.++++. .+
T Consensus 186 ~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~-----------------~~~-~~~-~~~~~~~~~~~~ 246 (414)
T PF03390_consen 186 EYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKG-----------------GDD-EEE-EAKKKEKPIDFS 246 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeC-----------------Ccc-ccc-cccccCCCCCHH
Confidence 4444555666666666665555543332211000000000000 000 000 0000000 00
Q ss_pred hHH--HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC-CchhhHHH---hHHhH-HHHHHHHHHHHHhhh-hhHHh
Q 047751 372 ELY--QLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT-DLAQHTLE---QVEPI-RNFFAALFLASIGML-IHVHF 443 (580)
Q Consensus 372 e~~--~l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~-~~~~~l~~---~l~~i-~~~f~plFFv~iGl~-id~~~ 443 (580)
+.- .++.+.+-.....+...+++|...-..+.=.++.-. -..+++++ ++..+ ..-+.+...+-+|.. +|++.
T Consensus 247 ~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~ 326 (414)
T PF03390_consen 247 DMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLND 326 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHH
Confidence 000 011111111112222333444333333332222211 11233333 44443 344455557778888 88888
Q ss_pred HhHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCC-hHHHHHHHHHHHhHHH-HHHHHHHHHHhCCCCh
Q 047751 444 LWNHVDI-LLAAVLLVIVVKTVVVATVIKGFRYS-NKTSLLVGMSLAQIGE-FAFVLLSRASNLHLVE 508 (580)
Q Consensus 444 l~~~~~~-~l~~vl~~~~~K~l~~~l~~~~~~~~-~r~a~~lgl~L~~rG~-~~lvla~~a~~~gii~ 508 (580)
+.....+ .+++++..+++-.+++++..++.|+- ...++..|+.|+.+|. -++.+++.+.+.+++.
T Consensus 327 l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~Lmp 394 (414)
T PF03390_consen 327 LIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMP 394 (414)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhccccc
Confidence 7655433 34445566777788899999999864 5556778878887754 3466666666666655
No 67
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=93.16 E-value=0.65 Score=49.65 Aligned_cols=115 Identities=12% Similarity=0.068 Sum_probs=75.9
Q ss_pred HHHHHHHHHHH--hcCCcHHHHHHHHHHhhCcCC--CCCCC-chHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHH
Q 047751 166 VSATCGGIAFA--CAGQPVITGYLLAGSVIGPGG--FSFVS-EMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAIL 240 (580)
Q Consensus 166 ~~a~l~~~l~~--rl~lP~ivg~IlaGilLGPs~--Lg~i~-~~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ 240 (580)
..++....+.+ .+.+|..++.+.+|+++-... ++..+ ..+.++.++++++-+++=.+=+.+.+-++-..+-+.+.
T Consensus 232 ~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~v 311 (404)
T COG0786 232 AVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLLV 311 (404)
T ss_pred HHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 33444434444 367999999999999987631 11111 45689999999999887777778877788777777776
Q ss_pred HHHHHHHHHHHHHHH-HHHhcCCChHHHHH----HHHHHhhccHH
Q 047751 241 GGLLQIFLFMCLCGI-IASLCGGKPSEGVF----VGVLLSMSSTA 280 (580)
Q Consensus 241 ia~~~~ll~~~l~~~-~~~~lg~~~~~al~----ig~~ls~TS~~ 280 (580)
+-.++.+...+.+.+ +...+|.++.++.. +|.-+.+|-++
T Consensus 312 iL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtA 356 (404)
T COG0786 312 ILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTA 356 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHH
Confidence 666776665544444 34578888766655 34444444443
No 68
>PRK04972 putative transporter; Provisional
Probab=93.08 E-value=0.67 Score=52.63 Aligned_cols=120 Identities=20% Similarity=0.217 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhHH---HHhh
Q 047751 160 DLVVVIVSATCGGIAF-ACAGQPVITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKL---RVVR 235 (580)
Q Consensus 160 ~l~lil~~a~l~~~l~-~rl~lP~ivg~IlaGilLGPs~Lg~i~~~~~le~la~lGli~llF~~GLeld~~~l---~~~~ 235 (580)
.+.+.+...+++|.+- +.+++-...|-+++|+++|-.+... -..+.++|+.+++|.+|++--+.-+ |+.+
T Consensus 16 ~lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~~------~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g 89 (558)
T PRK04972 16 LLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSI------NTDALNLGFMLFIFCVGVEAGPNFFSIFFRDG 89 (558)
T ss_pred HHHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCCC------ChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Confidence 3444444444444432 3466777789999999999754331 2234589999999999999988855 4555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH-hhccHHHHHHHHh
Q 047751 236 AVAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLL-SMSSTAVVLKFLM 287 (580)
Q Consensus 236 ~~av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~l-s~TS~~Vv~~iL~ 287 (580)
.+...++++.++++.+++..+.+++|.++. ...|... +.|++|.+.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 90 KNYLMLALVMVGSALVIALGLGKLFGWDIG--LTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHhhccccCcHHHHHHHH
Confidence 566666776667777777777777887753 3334333 4577777665544
No 69
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=92.38 E-value=17 Score=38.41 Aligned_cols=149 Identities=15% Similarity=0.077 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHhcCCCc-hhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHH---HHH
Q 047751 377 ASVAFCLLVAWCSDKLGL--SLELGSFAAGVMISTTDL-AQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNH---VDI 450 (580)
Q Consensus 377 ~~l~l~l~~~~lae~lGl--s~~lGaFvaGl~l~~~~~-~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~---~~~ 450 (580)
..+..+...+++.+.+++ ...+|+++.+.++..... .-..-+ .+.....-+.=..+|.+++...+... ...
T Consensus 159 ~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~---~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~ 235 (318)
T PF05145_consen 159 LLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPP---WLVNAAQVLIGASIGSRFTRETLRELRRLLPP 235 (318)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 344555666777777766 467888887777764311 111111 12333334445678888887776433 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHHHHHHHHHH
Q 047751 451 LLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGT-TALSLVTTPLL 529 (580)
Q Consensus 451 ~l~~vl~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~-vllS~l~~Pll 529 (580)
.+..++..+..-...+++..++.++|..+++. + .+|-|.-++.+.....+. |...-+..-.. .+.-.++.|++
T Consensus 236 ~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L-a--~aPGGl~eM~l~A~~l~~---d~~~V~~~q~~Rl~~v~~~~p~~ 309 (318)
T PF05145_consen 236 ALLSTLLLLALCALFAWLLSRLTGIDFLTALL-A--TAPGGLAEMALIALALGA---DVAFVAAHQVVRLLFVLLLAPFI 309 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-H--hCCccHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666778888889999999887653 3 589998888776655443 33333333333 33344567888
Q ss_pred HHhhh
Q 047751 530 FKLIP 534 (580)
Q Consensus 530 ~~l~p 534 (580)
.|+..
T Consensus 310 ~r~~~ 314 (318)
T PF05145_consen 310 ARWLR 314 (318)
T ss_pred HHHHH
Confidence 77764
No 70
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=91.86 E-value=20 Score=38.21 Aligned_cols=322 Identities=15% Similarity=0.145 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcH--HHH-HHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhHHHH
Q 047751 157 LISDLVVVIVSATCGGIAFACAGQPV--ITG-YLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRV 233 (580)
Q Consensus 157 li~~l~lil~~a~l~~~l~~rl~lP~--ivg-~IlaGilLGPs~Lg~i~~~~~le~la~lGli~llF~~GLeld~~~l~~ 233 (580)
.+.+.++.++.+..+++++..+++|. +.| -+++|++.+--+.. ++.+ ..+-.+|-..+=-.+|..+.++.+..
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~-l~~P---~~l~~~~q~ilG~~ig~~~t~s~l~~ 82 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT-LPLP---RGLFKAGQVILGIMIGASLTPSVLDT 82 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc-ccCC---hHHHHHHHHHHHHHHhhhcCHHHHHH
Confidence 35788888899999999999988765 467 77888888743322 2223 44445555555568999999887654
Q ss_pred h---hhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHH
Q 047751 234 V---RAVAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCA 310 (580)
Q Consensus 234 ~---~~~av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~ 310 (580)
. +...+...+......+..++....+-..+...+++-..--.. .....+=+|.| .+.... +.+|-+
T Consensus 83 l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~~gs~PGga---s~m~~iA~d~g---Ad~~~V----Al~Q~l- 151 (352)
T COG3180 83 LKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAFLGSSPGGA---SAMVSIAQDYG---ADLRLV----ALMQYL- 151 (352)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHhcCCchH---HHHHHHHHHhC---CChhHH----HHHHHH-
Confidence 3 333333333333333333333322222333333322111111 11111113433 222221 112211
Q ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh-----ccCcchHHHHHHHHHHHHH
Q 047751 311 VGLLFALLPVLGGSSGVLQGVISMTKSLVTLITFLAILTILSRTCVPWCLKLMISL-----SSQTNELYQLASVAFCLLV 385 (580)
Q Consensus 311 ~~lllal~~~l~~~~~~~~~~~~~~~~ll~~v~filv~~~v~r~~~~~l~~~~~~~-----~~~~~e~~~l~~l~l~l~~ 385 (580)
+++. .+....++.++... .+.-... .+..........+...++.
T Consensus 152 -------------------------Rvl~----Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~~~~l~~~~~~~ 200 (352)
T COG3180 152 -------------------------RVLF----VVLLAPLVSRLFVG--DGANGSGTPEIWLPPVDWLILLLLILAALLG 200 (352)
T ss_pred -------------------------HHHH----HHHHHHHHHHHhcC--CCCCCCCCccccCchhhHHHHHHHHHHHHHH
Confidence 1110 01111111111110 0000000 0001111123344444555
Q ss_pred HHHHHHhCc--hHHHHHHHHHHHhcCCC-chhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHH---HHHHHHHHHHH
Q 047751 386 AWCSDKLGL--SLELGSFAAGVMISTTD-LAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHV---DILLAAVLLVI 459 (580)
Q Consensus 386 ~~lae~lGl--s~~lGaFvaGl~l~~~~-~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~---~~~l~~vl~~~ 459 (580)
+.+...+++ ...+|+++.|..+.-.- ..-++-+-+ ..+-..+.=..+|.++|-+.+.... ...++.++..+
T Consensus 201 g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl---~~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~ 277 (352)
T COG3180 201 GLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWL---LAVAQALIGALIGSRFDRSILREAKRLLPAILVSIIALM 277 (352)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHH---HHHHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHH
Confidence 556665555 35677777777776432 111111111 2333444457789999877664322 22333344455
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 047751 460 VVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGT-TALSLVTTPLLFKLI 533 (580)
Q Consensus 460 ~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~-vllS~l~~Pll~~l~ 533 (580)
+.-...+++..+..+.|+.++. ++ .+|-|.-++.....+.+ .|...-..+-.. .++=..+.|.+.|..
T Consensus 278 ~~~~~~a~ll~~~~~i~~~ta~-La--~sPGGl~~ma~~A~~l~---ad~a~V~a~q~lRll~il~i~p~l~r~l 346 (352)
T COG3180 278 AIAAGMAGLLSWLTGIDLNTAY-LA--TSPGGLDTMAAIAAALG---ADPAFVMALQVLRLLFILLLGPALARFL 346 (352)
T ss_pred HHHHHHHHHHHHhcCCCHHHHH-HH--cCCCcHHHHHHHHHHcC---CChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777888888999988765 33 47888777666554443 233333333221 222223447777765
No 71
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=91.76 E-value=12 Score=35.24 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHhCch--HHHHHHHHHHHhcCCCc-hhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhH---HHHHHH
Q 047751 379 VAFCLLVAWCSDKLGLS--LELGSFAAGVMISTTDL-AQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWN---HVDILL 452 (580)
Q Consensus 379 l~l~l~~~~lae~lGls--~~lGaFvaGl~l~~~~~-~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~---~~~~~l 452 (580)
+..+...+++.+++|+. ..+|+.+++.++.-... .-+.-+ .+..+-.-+-=..+|.+++.+.+.. .+...+
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~---~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l 80 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPP---WLLALAQVVIGILIGSRFTREVLAELKRLWPAAL 80 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCH---HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 34455566777888875 88999999888874321 111111 2233444444578899998877643 333344
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHHHHHHHHHHHH
Q 047751 453 AAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGT-TALSLVTTPLLFK 531 (580)
Q Consensus 453 ~~vl~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~-vllS~l~~Pll~~ 531 (580)
..++..+..-...+++..+..++|..+++ ++ ..|-|.-++..... +.| -|...-+..-.. +++-.++.|.+.+
T Consensus 81 ~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~--~~g-ad~~~V~~~q~~Rl~~v~~~~P~i~~ 154 (156)
T TIGR03082 81 LSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAA--ELG-ADVAFVAAMQTLRLLFVVLLVPLLAR 154 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHH--HhC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566677788888999999998885 33 47888777766544 444 233333333322 2222345565554
No 72
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=91.38 E-value=2.5 Score=44.15 Aligned_cols=86 Identities=20% Similarity=0.168 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 047751 183 ITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCGG 262 (580)
Q Consensus 183 ivg~IlaGilLGPs~Lg~i~~~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~~ll~~~l~~~~~~~lg~ 262 (580)
.+-.++.|+++|+. .. +-.+.++.=.++++.|..|..|..+|++++.+.+...+.+++..+..++..+..+..++|.
T Consensus 169 lilpILiGmilGNl--d~-~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg~ 245 (312)
T PRK12460 169 ALLPLVLGMILGNL--DP-DMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVGG 245 (312)
T ss_pred HHHHHHHHHHHhcc--ch-hhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56667888888872 11 1123344444558899999999999999999999999999988888888777777777787
Q ss_pred ChHHHHHHH
Q 047751 263 KPSEGVFVG 271 (580)
Q Consensus 263 ~~~~al~ig 271 (580)
+...+..+|
T Consensus 246 ~~~~g~li~ 254 (312)
T PRK12460 246 TGIAGAAAS 254 (312)
T ss_pred ChhHHHHHH
Confidence 776666666
No 73
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=91.32 E-value=3 Score=39.31 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=67.6
Q ss_pred CcHHHHHHHHHHhhCcCCC-CCC---CchHHHHHHHHHHHHHHHHHHhhcCChhHHH---Hhh-hHHHHHHHHHHHHHHH
Q 047751 180 QPVITGYLLAGSVIGPGGF-SFV---SEMVQVETVAQFGVIFLLFALGLEFSTAKLR---VVR-AVAILGGLLQIFLFMC 251 (580)
Q Consensus 180 lP~ivg~IlaGilLGPs~L-g~i---~~~~~le~la~lGli~llF~~GLeld~~~l~---~~~-~~av~ia~~~~ll~~~ 251 (580)
+-...|-+++|+++|-..- +.+ -+......+.++|+.++++.+|++--++-+. +.+ .....++.+-++++.+
T Consensus 21 LG~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~ 100 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTL 100 (154)
T ss_pred ecccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 3346788999999986431 111 1344677899999999999999998887554 433 1233333334445555
Q ss_pred HHHHHH-HhcCCChHHHHHHHHH-HhhccHHHHHHHHhhh
Q 047751 252 LCGIIA-SLCGGKPSEGVFVGVL-LSMSSTAVVLKFLMER 289 (580)
Q Consensus 252 l~~~~~-~~lg~~~~~al~ig~~-ls~TS~~Vv~~iL~e~ 289 (580)
++.++. ++++.++ ....|.+ =+.|++|......+..
T Consensus 101 ~~~~~~~~~~~~~~--~~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 101 LVAVALIKLLRINY--ALTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHHHHhCCCH--HHHHHHHhccccChHHHHHHHHHh
Confidence 555443 5677765 3455554 4668888876655443
No 74
>COG2985 Predicted permease [General function prediction only]
Probab=91.31 E-value=2 Score=47.14 Aligned_cols=103 Identities=23% Similarity=0.420 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChh---HHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 047751 183 ITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTA---KLRVVRAVAILGGLLQIFLFMCLCGIIASL 259 (580)
Q Consensus 183 ivg~IlaGilLGPs~Lg~i~~~~~le~la~lGli~llF~~GLeld~~---~l~~~~~~av~ia~~~~ll~~~l~~~~~~~ 259 (580)
..|-++.|.+++..++.+..+.-.. |+|++++.+.+|+|--+. .+|+.+++-..++++-++....+.+++..+
T Consensus 37 l~g~L~Vgl~l~~~~~~i~~~~l~f----~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~allivi~~~~~a~~l~k~ 112 (544)
T COG2985 37 LFGVLFVGLFLGQYGFTINTDMLHF----ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLIVIAALLLAWVLHKL 112 (544)
T ss_pred hhhHhHHHHHhcccccccccchhhh----hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667778888887766654443222 999999999999999887 467788887777766533333333333444
Q ss_pred cCCChHHHHHHHHHH-hhccHHHH---HHHHhhhcc
Q 047751 260 CGGKPSEGVFVGVLL-SMSSTAVV---LKFLMERNS 291 (580)
Q Consensus 260 lg~~~~~al~ig~~l-s~TS~~Vv---~~iL~e~~~ 291 (580)
++.+. .+..|..- +.||+|.. ...+.|.+.
T Consensus 113 ~~~~~--~~~~Gm~sGAlTsTP~L~aa~~~L~~lg~ 146 (544)
T COG2985 113 FGIDL--GLIAGMFSGALTSTPGLGAAQDILRELGA 146 (544)
T ss_pred cCCCH--HHhhhhhcccccCCchhHHHHHHHHhhcc
Confidence 55543 22333222 34565554 446666554
No 75
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=91.30 E-value=3 Score=40.74 Aligned_cols=127 Identities=17% Similarity=0.124 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCCCchhhHHHhHHhHHHHHHHHHHHHHhhhh--hH---HhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047751 398 LGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLI--HV---HFLWNHVDILLAAVLLVIVVKTVVVATVIKG 472 (580)
Q Consensus 398 lGaFvaGl~l~~~~~~~~l~~~l~~i~~~f~plFFv~iGl~i--d~---~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~ 472 (580)
++++++|+++......+ .+..+...+..+-+....+|+++ |- +.+.+.....+.+.+...++-.+++++..++
T Consensus 2 l~~li~Gi~lG~~~~~~--~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~l 79 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP--FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLL 79 (191)
T ss_pred eeeHHHHHHHHHHhccc--ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777776542222 12224444433333444455555 32 2333222334555567788899999999999
Q ss_pred cCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHH-H---HHHHHHHHHHHHh
Q 047751 473 FRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGT-T---ALSLVTTPLLFKL 532 (580)
Q Consensus 473 ~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~-v---llS~l~~Pll~~l 532 (580)
.+++.+|++.++.+++=-+--+..+.. ..+++.-++..++ + +++.+..|++.|+
T Consensus 80 l~~~~~~~lav~sG~GwYSlsg~~i~~------~~~~~~G~iafl~n~~RE~~a~~~~P~~~r~ 137 (191)
T PF03956_consen 80 LGLSLKESLAVASGFGWYSLSGVLITQ------LYGPELGTIAFLSNLFREILAIILIPLLARY 137 (191)
T ss_pred hcCCHHHHHHHHccCcHHHhHHHHHHh------hhCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998876655544444433 2233333333332 1 4566788988884
No 76
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=91.20 E-value=7.8 Score=40.62 Aligned_cols=112 Identities=19% Similarity=0.205 Sum_probs=72.1
Q ss_pred HhcCCcHHHHHHHHHHhhCcCCCCCCCc-hHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHH-HHHHHH
Q 047751 176 ACAGQPVITGYLLAGSVIGPGGFSFVSE-MVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIF-LFMCLC 253 (580)
Q Consensus 176 ~rl~lP~ivg~IlaGilLGPs~Lg~i~~-~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~~l-l~~~l~ 253 (580)
+-++-|.+.+. +.|+++...+...-+. .+.++.+++...-+-||..|+.++.++.++.++........-.+ .|. ++
T Consensus 178 ~~~~nP~iia~-i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~-i~ 255 (321)
T TIGR00946 178 KLIKFPPLWAP-LLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPA-VM 255 (321)
T ss_pred HHHhCCChHHH-HHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHH-HH
Confidence 34688888875 5567776544432111 45799999999999999999999998887766666555555544 354 33
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhccHHHHHHHHhhhc
Q 047751 254 GIIASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERN 290 (580)
Q Consensus 254 ~~~~~~lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~~ 290 (580)
..+...++.+.. ..-.....+..-+++...++.+.-
T Consensus 256 ~~~~~~~~l~~~-~~~~~vl~aa~P~a~~~~i~A~~y 291 (321)
T TIGR00946 256 AGISKLIGLRGL-ELSVAILQAALPGGAVAAVLATEY 291 (321)
T ss_pred HHHHHHhCCChH-HHHHHHHHHcCChhhHHHHHHHHh
Confidence 444556666532 234445555555666666666653
No 77
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=89.53 E-value=2.6 Score=43.75 Aligned_cols=121 Identities=19% Similarity=0.288 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCC--c--hhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHH
Q 047751 376 LASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTD--L--AQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDIL 451 (580)
Q Consensus 376 l~~l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~~--~--~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~ 451 (580)
...+.++|+.+.++..+.+|+..|-.+||++..... + .+.+..++..+. ..+....+|+++.+..+...-.+.
T Consensus 12 v~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelG---ViLLmFgvGLhfslkdLLavk~iA 88 (408)
T COG4651 12 VGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELG---VILLMFGVGLHFSLKDLLAVKAIA 88 (408)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhh---HHHHHHhcchheeHHHHhhHHHHh
Confidence 345667778889999999999999999999997432 2 123333444443 344466899999988875322121
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHH
Q 047751 452 LAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRAS 502 (580)
Q Consensus 452 l~~vl~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~ 502 (580)
+--.+.-+..-..-.+...+..|++....+..|+.++.-+.+ .+.++.
T Consensus 89 ipgAl~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTV---vllraL 136 (408)
T COG4651 89 IPGALAQIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTV---VLLRAL 136 (408)
T ss_pred cchHHHHHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHH---HHHHHH
Confidence 111111111112233344566788888888888888776655 444444
No 78
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=88.84 E-value=35 Score=36.15 Aligned_cols=133 Identities=13% Similarity=0.107 Sum_probs=70.0
Q ss_pred CcHHHHHHHHHHhhCcCCCC---CCC--chHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHH--HHH-HHHHH-HHHH
Q 047751 180 QPVITGYLLAGSVIGPGGFS---FVS--EMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVA--ILG-GLLQI-FLFM 250 (580)
Q Consensus 180 lP~ivg~IlaGilLGPs~Lg---~i~--~~~~le~la~lGli~llF~~GLeld~~~l~~~~~~a--v~i-a~~~~-ll~~ 250 (580)
-+-+.-.+++|+.+|-..-+ .+. +...++.--.+|+++.++-.=+++|.+++++..+.. +.. -.... +.|+
T Consensus 17 ~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~ 96 (342)
T COG0798 17 TLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPL 96 (342)
T ss_pred HHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33455667888888844322 222 233566667788888888888999999999776532 221 12222 2344
Q ss_pred HHHHHHHH-hcCCChHHHHHHHHHHhhccHHHHH-HHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 047751 251 CLCGIIAS-LCGGKPSEGVFVGVLLSMSSTAVVL-KFLMERNSISALHGQVTIGTLILQDCAVGLLFALL 318 (580)
Q Consensus 251 ~l~~~~~~-~lg~~~~~al~ig~~ls~TS~~Vv~-~iL~e~~~~~s~~g~l~ls~avl~Dv~~~lllal~ 318 (580)
.. +.+++ +++..+ ....|.++-.-++-..+ -+-.++ .+.+. +.++..-.+||++.+++++..
T Consensus 97 lm-~~la~~fl~~~p--ey~~GlILlglApC~aMVivw~~L--a~Gd~-~~tlv~Va~n~l~qiv~y~~~ 160 (342)
T COG0798 97 LM-FALAWFFLPDEP--EYRAGLILLGLAPCIAMVIVWSGL--AKGDR-ELTLVLVAFNSLLQIVLYAPL 160 (342)
T ss_pred HH-HHHHHHHhCCCH--HHHHHHHHHHhhhhHHHHHHHHhh--ccCcH-hhhhHHHHHHHHHHHHHHHHH
Confidence 33 33333 333322 33344443332211111 112332 22332 345555668998888777544
No 79
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=88.76 E-value=33 Score=35.85 Aligned_cols=135 Identities=18% Similarity=0.136 Sum_probs=86.6
Q ss_pred chHHHHHHHHHHHhcCC--CchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047751 394 LSLELGSFAAGVMISTT--DLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIK 471 (580)
Q Consensus 394 ls~~lGaFvaGl~l~~~--~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~ 471 (580)
.++.+=+.++|+++.-. +..+-+.+-++.+.+...|+-...+|+.++.......+......+.+..+.-++.++....
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~ 260 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISK 260 (321)
T ss_pred hCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777777643 3345667788888999999999999999987776544444444455566666667777777
Q ss_pred hcCCChHHH--HHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 047751 472 GFRYSNKTS--LLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKL 532 (580)
Q Consensus 472 ~~~~~~r~a--~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~vllS~l~~Pll~~l 532 (580)
.++.+.... ..+-. -.|-+....+ .+.++|.-.+..-..+..++++|.++-|++..+
T Consensus 261 ~~~l~~~~~~~~vl~a-a~P~a~~~~i---~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 261 LIGLRGLELSVAILQA-ALPGGAVAAV---LATEYEVDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HhCCChHHHHHHHHHH-cCChhhHHHH---HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777764332 22222 2344444333 445666544444555556888899999988654
No 80
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=88.61 E-value=23 Score=38.63 Aligned_cols=122 Identities=16% Similarity=0.100 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHh--cCCcHHHHHHHHHHhhCcCC--CCCCC-chHHHHHHHHHHHHHHHHHHhhcCChhHHHHh
Q 047751 160 DLVVVIVSATCGGIAFAC--AGQPVITGYLLAGSVIGPGG--FSFVS-EMVQVETVAQFGVIFLLFALGLEFSTAKLRVV 234 (580)
Q Consensus 160 ~l~lil~~a~l~~~l~~r--l~lP~ivg~IlaGilLGPs~--Lg~i~-~~~~le~la~lGli~llF~~GLeld~~~l~~~ 234 (580)
.+.+.+..++......+. +.+|..++.+++|+++-+.. .+..+ .++.++.++++.+-+++-.+=+.+++..+...
T Consensus 223 ~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~ 302 (398)
T TIGR00210 223 LIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADL 302 (398)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 344444455555555554 77999999999999998642 11111 23489999999999999888889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHhcCCChHHHH----HHHHHHhhccHHH
Q 047751 235 RAVAILGGLLQIFLFMCLCGII-ASLCGGKPSEGV----FVGVLLSMSSTAV 281 (580)
Q Consensus 235 ~~~av~ia~~~~ll~~~l~~~~-~~~lg~~~~~al----~ig~~ls~TS~~V 281 (580)
..+.+.+.+.+++...+.+..+ ...+|.+...++ ++|..+.+|.+++
T Consensus 303 a~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~G~~lGatptai 354 (398)
T TIGR00210 303 AGPIALILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTAI 354 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccccccccchHHHH
Confidence 9999999999988877555544 456788755444 4566666666554
No 81
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=88.43 E-value=40 Score=36.29 Aligned_cols=90 Identities=19% Similarity=0.240 Sum_probs=56.6
Q ss_pred hHHhH--HHHHHHHHHHHHhhh-hhHHhHhHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCC-ChHHHHHHHHHHHhHHHH
Q 047751 419 QVEPI--RNFFAALFLASIGML-IHVHFLWNHVDI-LLAAVLLVIVVKTVVVATVIKGFRY-SNKTSLLVGMSLAQIGEF 493 (580)
Q Consensus 419 ~l~~i--~~~f~plFFv~iGl~-id~~~l~~~~~~-~l~~vl~~~~~K~l~~~l~~~~~~~-~~r~a~~lgl~L~~rG~~ 493 (580)
++..+ +++.-|+ .+.+|.. +|+..+.....+ -.++.+.++++-..+.+++.|+.|+ |...++.-|+.|+.+|..
T Consensus 319 ~l~~F~sk~~t~~L-m~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGt 397 (438)
T COG3493 319 QLSQFFSKNLTWPL-MAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGT 397 (438)
T ss_pred HHHHHHHHhhHHHH-HHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCC
Confidence 44443 3455554 4456665 777776554333 2344455567778889999999985 555567777999988654
Q ss_pred -HHHHHHHHHhCCCChH
Q 047751 494 -AFVLLSRASNLHLVEG 509 (580)
Q Consensus 494 -~lvla~~a~~~gii~~ 509 (580)
++.+++.+-+.++++-
T Consensus 398 GDvaVLsAa~RM~LmpF 414 (438)
T COG3493 398 GDVAVLSAADRMELMPF 414 (438)
T ss_pred CchHHhhhcchhccccH
Confidence 4556666655566653
No 82
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=87.90 E-value=0.11 Score=55.67 Aligned_cols=111 Identities=16% Similarity=0.201 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHhcCCCch--hhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHH
Q 047751 381 FCLLVAWCSDKLGLSLELGSFAAGVMISTTDLA--QHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLV 458 (580)
Q Consensus 381 l~l~~~~lae~lGls~~lGaFvaGl~l~~~~~~--~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~ 458 (580)
.++....+.++++++..+|-.++|++++..... +.-.+..+.+.++.+++.....|.++|.+.+...+...+...+..
T Consensus 7 ~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~ 86 (380)
T PF00999_consen 7 LAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVG 86 (380)
T ss_dssp -----------------------------------------S-SSHHHHS--SSHHHHTTGGGG----------------
T ss_pred hHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccce
Confidence 344445578999999999999999999987544 111345666788888888889999999999876665443333333
Q ss_pred HHHHHHH-HHHHHh---hcCCChHHHHHHHHHHHhHH
Q 047751 459 IVVKTVV-VATVIK---GFRYSNKTSLLVGMSLAQIG 491 (580)
Q Consensus 459 ~~~K~l~-~~l~~~---~~~~~~r~a~~lgl~L~~rG 491 (580)
++.-++. ++.... ..+.++.+++.+|..+++-.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 87 FLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp ---------------------------TTHHHHTT--
T ss_pred eeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 3333333 444332 47889999999998887655
No 83
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=87.76 E-value=9 Score=37.57 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHhhCcCC---CCCCCchHHHHHHHHHHHH-------HHHHHHh
Q 047751 157 LISDLVVVIVSATCGGIAFACA---GQPVITGYLLAGSVIGPGG---FSFVSEMVQVETVAQFGVI-------FLLFALG 223 (580)
Q Consensus 157 li~~l~lil~~a~l~~~l~~rl---~lP~ivg~IlaGilLGPs~---Lg~i~~~~~le~la~lGli-------~llF~~G 223 (580)
++..+.++=+..++..++.||+ |++.----|+.|+++.-.+ -|--+....+..++-+|+. |-.-.-.
T Consensus 14 Li~aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~gG~~TgG~kGlaDi~lfsGiglmGGaMlRDfAIvaTA 93 (254)
T TIGR00808 14 LITAFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVGGVYTGGEKGLADIAIFGGFGLMGGAMLRDLAIVATA 93 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHcccccCCccccchhhhhcchhhhhhHHHHHHHHHHHh
Confidence 4566666666777777888876 5777777788888886432 1111222334444444332 1233456
Q ss_pred hcCChhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 047751 224 LEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCGGK 263 (580)
Q Consensus 224 Leld~~~l~~~~~~av~ia~~~~ll~~~l~~~~~~~lg~~ 263 (580)
.|.|.+++||.+..-+.--+.+.++||+++..+++.+|++
T Consensus 94 f~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~ 133 (254)
T TIGR00808 94 FEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYR 133 (254)
T ss_pred hcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7899999999998887777888899999999999998874
No 84
>PRK03818 putative transporter; Validated
Probab=87.33 E-value=3.5 Score=46.82 Aligned_cols=101 Identities=19% Similarity=0.183 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhCcCCCC-C---CCchHHHHHHHHHHHHHHHHHHhhcCChhHHHH----hhhHHHHHHHHHHHHHHHHHH
Q 047751 183 ITGYLLAGSVIGPGGFS-F---VSEMVQVETVAQFGVIFLLFALGLEFSTAKLRV----VRAVAILGGLLQIFLFMCLCG 254 (580)
Q Consensus 183 ivg~IlaGilLGPs~Lg-~---i~~~~~le~la~lGli~llF~~GLeld~~~l~~----~~~~av~ia~~~~ll~~~l~~ 254 (580)
.-|.+++|+++|-..-. . .-+......+.++|+.+++..+|++--.+-+.. .+......+.+..++|.+++.
T Consensus 403 ~~G~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~ 482 (552)
T PRK03818 403 AGGPLIVALILGRIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVG 482 (552)
T ss_pred chHHHHHHHHHHhccCCCCceeecCHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 46899999999964321 1 123456888999999999999999987765443 456666777777777887777
Q ss_pred HHH-HhcCCChHHHHHHHHH-HhhccHHHHHHH
Q 047751 255 IIA-SLCGGKPSEGVFVGVL-LSMSSTAVVLKF 285 (580)
Q Consensus 255 ~~~-~~lg~~~~~al~ig~~-ls~TS~~Vv~~i 285 (580)
+++ ++++.++. ..+|.+ =+.|++|...-.
T Consensus 483 ~~~~~~~~~~~~--~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 483 ILARMLAKMNYL--TLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHcCCHH--HHHHHHhccCCCcHHHHHH
Confidence 775 66777654 455544 566888877554
No 85
>COG2431 Predicted membrane protein [Function unknown]
Probab=87.30 E-value=3.2 Score=42.43 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCC---hhHHH-HhhhHHHHHHHHHHHHHHHHHHHHH
Q 047751 182 VITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFS---TAKLR-VVRAVAILGGLLQIFLFMCLCGIIA 257 (580)
Q Consensus 182 ~ivg~IlaGilLGPs~Lg~i~~~~~le~la~lGli~llF~~GLeld---~~~l~-~~~~~av~ia~~~~ll~~~l~~~~~ 257 (580)
.+.++.+.|+++|-..-... ...+...+..+.+++|.+|.++. ....+ ...|+.+..++..++...+.+.+.+
T Consensus 108 k~~~~vl~g~~~G~l~~~~~---~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~ilssliGG~iaa 184 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFL---NFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLLSSLIGGLIAA 184 (297)
T ss_pred HHHHHHHHHHHHHHHhcccc---cCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 45667777777775432222 23677888999999999999987 22111 2235666666666555544444556
Q ss_pred HhcCCChHHHHHHHHHH
Q 047751 258 SLCGGKPSEGVFVGVLL 274 (580)
Q Consensus 258 ~~lg~~~~~al~ig~~l 274 (580)
++++.+..+++.++.-.
T Consensus 185 ~~l~lpl~~~lAmasG~ 201 (297)
T COG2431 185 FLLDLPLTTGLAMASGF 201 (297)
T ss_pred HHHhccHHHHHHHHhcc
Confidence 77788887776665543
No 86
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=86.77 E-value=25 Score=38.00 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-hHHHHHHHHHHH---hHHHHHHHHH
Q 047751 423 IRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYS-NKTSLLVGMSLA---QIGEFAFVLL 498 (580)
Q Consensus 423 i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~~~~~-~r~a~~lgl~L~---~rG~~~lvla 498 (580)
+++.++|+=-...=++.|++.++....-.+...++..++-.+++.+....++.. ..|.+.+.-.+. .-|..-++-.
T Consensus 56 v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av 135 (378)
T PF05684_consen 56 VWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAV 135 (378)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCchhHHHHH
Confidence 456666766666667889998876655555555555556666666555555433 234443332222 1244444443
Q ss_pred HHHHhCCCChHHHHHHHHHH-HHHHHHHHHHHH
Q 047751 499 SRASNLHLVEGKLYLLLLGT-TALSLVTTPLLF 530 (580)
Q Consensus 499 ~~a~~~gii~~~~~~~lv~~-vllS~l~~Pll~ 530 (580)
..+ .+ .+++.+...+.+ .+++.+--.++.
T Consensus 136 ~~a--l~-~~~~~~~a~~aaDnv~~~~~~~~l~ 165 (378)
T PF05684_consen 136 AEA--LG-VSDSLFAAALAADNVVMALWFAFLL 165 (378)
T ss_pred HHH--HC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 44 356776666543 344444333333
No 87
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=85.82 E-value=28 Score=38.33 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC---CchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHH
Q 047751 379 VAFCLLVAWCSDKLGLSLELGSFAAGVMISTT---DLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAV 455 (580)
Q Consensus 379 l~l~l~~~~lae~lGls~~lGaFvaGl~l~~~---~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~v 455 (580)
+.+......+.+.+..+...-..+.|+..... ....+....-|.+..+++|+-...-|+++|.+.+++++..+..+.
T Consensus 15 l~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La 94 (429)
T COG0025 15 LLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLA 94 (429)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHH
Confidence 34444445555555555555555555544421 111111112222337788888888999999999988777655554
Q ss_pred HHHHHHHHHHHHHHHhhc--CCChHHHHHHHHHHHhHHHHH
Q 047751 456 LLVIVVKTVVVATVIKGF--RYSNKTSLLVGMSLAQIGEFA 494 (580)
Q Consensus 456 l~~~~~K~l~~~l~~~~~--~~~~r~a~~lgl~L~~rG~~~ 494 (580)
....+...++.....++. ++|+..++.+|..+++-.-+.
T Consensus 95 ~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~ 135 (429)
T COG0025 95 LPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVA 135 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchh
Confidence 444444555554444444 788888888888777766443
No 88
>PRK09903 putative transporter YfdV; Provisional
Probab=83.59 E-value=38 Score=35.41 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=65.5
Q ss_pred cCCcHHHHHHHHHHhhCcCCCCCCCc-hHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHH-HHHHHHHHH
Q 047751 178 AGQPVITGYLLAGSVIGPGGFSFVSE-MVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQI-FLFMCLCGI 255 (580)
Q Consensus 178 l~lP~ivg~IlaGilLGPs~Lg~i~~-~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~~-ll~~~l~~~ 255 (580)
++-|.+.+. ++|+++.-.++..-+. .+.++.+++...-+-||..|+.++....+..+ +.+...+.-. +.|.++ ..
T Consensus 171 ~~nP~iia~-~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~-~~~~~~~~Kli~~P~i~-~~ 247 (314)
T PRK09903 171 AKEPVVWAP-VLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSA-EIAYNTFLKLILMPLAL-LL 247 (314)
T ss_pred HhchHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccH-HHHHHHHHHHHHHHHHH-HH
Confidence 556888876 4555555433332211 45788999999999999999988766554333 3333333333 345433 33
Q ss_pred HHHhcCCChHHHHHHHHHHhhccHHHHHHHHhhhc
Q 047751 256 IASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERN 290 (580)
Q Consensus 256 ~~~~lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~~ 290 (580)
..++++.+. ...-+..+.+..-+++...++.++-
T Consensus 248 ~~~~~~l~~-~~~~v~vl~aa~P~a~~~~i~A~~y 281 (314)
T PRK09903 248 VGMACHLNS-EHLQMMVLAGALPPAFSGIIIASRF 281 (314)
T ss_pred HHHHcCCCc-HHHHHHHHHHcccHHHHHHHHHHHH
Confidence 445567653 3334556666666777777777754
No 89
>PRK09903 putative transporter YfdV; Provisional
Probab=81.40 E-value=73 Score=33.26 Aligned_cols=134 Identities=10% Similarity=0.034 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHhcC--CCchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047751 395 SLELGSFAAGVMIST--TDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKG 472 (580)
Q Consensus 395 s~~lGaFvaGl~l~~--~~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~ 472 (580)
++.+-+.++|+++.- -+..+-+.+-++.+.+...|+-...+|+.+........+. .....+...+.-++..+.....
T Consensus 173 nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~~-~~~~~~~Kli~~P~i~~~~~~~ 251 (314)
T PRK09903 173 EPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAE-IAYNTFLKLILMPLALLLVGMA 251 (314)
T ss_pred chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554442 2444567778888899999999999999987654422221 1222233444445556666666
Q ss_pred cCCChHHHH-HHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 047751 473 FRYSNKTSL-LVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLL-GTTALSLVTTPLLFKLI 533 (580)
Q Consensus 473 ~~~~~r~a~-~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv-~~vllS~l~~Pll~~l~ 533 (580)
++.+..+.. .+=....|-+....++ +.+.|. |++..+..+ .++++|.++-|++..+.
T Consensus 252 ~~l~~~~~~v~vl~aa~P~a~~~~i~---A~~y~~-~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 252 CHLNSEHLQMMVLAGALPPAFSGIII---ASRFNV-YTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred cCCCcHHHHHHHHHHcccHHHHHHHH---HHHHcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677643321 1111123545444444 445564 445554444 57888999999987763
No 90
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=80.58 E-value=24 Score=32.74 Aligned_cols=98 Identities=14% Similarity=0.145 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCcHH---HHHHHHHHhhCcCCCCCCCchHHHHH-----HHHHHHHHHHHHHhhc
Q 047751 154 DLRLISDLVVVIVSATCGGIAFACAGQPVI---TGYLLAGSVIGPGGFSFVSEMVQVET-----VAQFGVIFLLFALGLE 225 (580)
Q Consensus 154 d~~li~~l~lil~~a~l~~~l~~rl~lP~i---vg~IlaGilLGPs~Lg~i~~~~~le~-----la~lGli~llF~~GLe 225 (580)
.++++.|+++++.+..++..+.+-+++|-. +|.++-=+.+ .++.++. ++++. +.++++.|+==.+|+=
T Consensus 6 ~~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L---~~~~vk~-~~v~~~a~~LL~~m~LfFVPagVGim 81 (141)
T PRK04125 6 VYSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLL---CTKVVKL-EQVESLGTALTNNIGFLFVPSGISVI 81 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH---HhCCcCH-HHHHHHHHHHHHHHHHHHhhhHhHHH
Confidence 456789999999999999888888876643 3333221111 1233322 22332 3445555554456666
Q ss_pred CChhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 047751 226 FSTAKLRVVRAVAILGGLLQIFLFMCLCGI 255 (580)
Q Consensus 226 ld~~~l~~~~~~av~ia~~~~ll~~~l~~~ 255 (580)
...+.+++.+...+...++++++.+++++.
T Consensus 82 ~~~~ll~~~~~~Il~~ivvSTllvl~vtg~ 111 (141)
T PRK04125 82 NSLGVMSQYPVQIIGVIIVATILLLACTGL 111 (141)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665555555555554444443
No 91
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=79.50 E-value=45 Score=35.61 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhc-CCcHHHHHHHHHHhhCcCCCCCCCch-----HHHH-HHHHHHHHHHHHHHhhc-CChhHHHHhh-hH
Q 047751 167 SATCGGIAFACA-GQPVITGYLLAGSVIGPGGFSFVSEM-----VQVE-TVAQFGVIFLLFALGLE-FSTAKLRVVR-AV 237 (580)
Q Consensus 167 ~a~l~~~l~~rl-~lP~ivg~IlaGilLGPs~Lg~i~~~-----~~le-~la~lGli~llF~~GLe-ld~~~l~~~~-~~ 237 (580)
.-+.++.+++.+ ++|..+-.++.|+++-- +|++++. .+.. .+..--...+++-+|+. .|++++-+.. ..
T Consensus 190 ~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~ 267 (347)
T TIGR00783 190 ALFMAGGLLKSFPGIPAYAFMILIAAALKA--FGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ 267 (347)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh
Confidence 334444455554 68999999999999874 5666542 2233 22222233345557886 8999998877 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH-HHHh
Q 047751 238 AILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVG-VLLS 275 (580)
Q Consensus 238 av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig-~~ls 275 (580)
.+.+.+..++...+.+++++.++|.-+.|+-..+ .|.+
T Consensus 268 ~vviiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~ 306 (347)
T TIGR00783 268 FVVICLSVVVAMILGGAFLGKLMGMYPVESAITAGLCNS 306 (347)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhcc
Confidence 4444444444444445567888998776655443 3544
No 92
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=79.37 E-value=47 Score=35.18 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHH
Q 047751 424 RNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSR 500 (580)
Q Consensus 424 ~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~ 500 (580)
.+++-|+-|.-+|..+|+..+..++...+.. ..+= .-+..++..+...|++.+|+-.+|..=+.-|-.++.+.+.
T Consensus 68 ~~l~P~LIF~GIGAmtDFgpllanP~~~llG-aaAQ-~Gif~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~ 142 (360)
T PF03977_consen 68 NGLFPPLIFMGIGAMTDFGPLLANPKTLLLG-AAAQ-FGIFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSK 142 (360)
T ss_pred cchhhHHHHHHHhHHHhhHHHHhCHHHHHHH-HHHH-HhHHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHh
Confidence 4688899999999999999887655442221 1121 1234556666777999999999998767777777777664
No 93
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=79.16 E-value=31 Score=36.85 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCC-CchhhHHHhHHhH-HHHHHHHH-HHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 047751 398 LGSFAAGVMISTT-DLAQHTLEQVEPI-RNFFAALF-LASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFR 474 (580)
Q Consensus 398 lGaFvaGl~l~~~-~~~~~l~~~l~~i-~~~f~plF-Fv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~~~ 474 (580)
+....+|....+. -+.++-.+.+..+ ..+++|.+ |..++-..+...+.+.|.. .....+..+.-++..++..+.++
T Consensus 10 ~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 88 (385)
T PF03547_consen 10 FLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFI-PVFAFIIFILGLLLGFLLSRLFR 88 (385)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344455555543 3445556677776 57999987 5555554545544443332 22222333333556666677777
Q ss_pred CChHHHH--HHHHHHHhHHHHHHHHHHHHH
Q 047751 475 YSNKTSL--LVGMSLAQIGEFAFVLLSRAS 502 (580)
Q Consensus 475 ~~~r~a~--~lgl~L~~rG~~~lvla~~a~ 502 (580)
.+.+++. ..+...+.-|-+.+-+...-.
T Consensus 89 ~~~~~~~~~~~~~~~~N~~~lglpi~~~l~ 118 (385)
T PF03547_consen 89 LPKEWRGVFVLAASFGNTGFLGLPILQALF 118 (385)
T ss_pred CCcccceEEEecccCCcchhhHHHHHHHHh
Confidence 7765543 333334555666665554433
No 94
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=78.87 E-value=36 Score=36.34 Aligned_cols=105 Identities=18% Similarity=0.203 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCcHH--HHHHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHH
Q 047751 161 LVVVIVSATCGGIAFACAGQPVI--TGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVA 238 (580)
Q Consensus 161 l~lil~~a~l~~~l~~rl~lP~i--vg~IlaGilLGPs~Lg~i~~~~~le~la~lGli~llF~~GLeld~~~l~~~~~~a 238 (580)
+.+.+..+.+.+.+.+++|+|.. .+-++.|.++--.+ ..+.+.-+.+..++-.++--.+|.++|-..++...|..
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~---~~~~~lP~wl~~va~~~iG~~IG~~f~~~~l~~~~r~~ 266 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGG---GITIQLPAWLLAVAQALIGALIGSRFDRSILREAKRLL 266 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhccc---ceeeeCCHHHHHHHHHHHHHHHcccccHHHHHHhHhhc
Confidence 55666677788888998888764 44445554443222 11222223333566667777999999999988776644
Q ss_pred HHHHHHH---HHHHHHHHHHHHHhcCCChHHHH
Q 047751 239 ILGGLLQ---IFLFMCLCGIIASLCGGKPSEGV 268 (580)
Q Consensus 239 v~ia~~~---~ll~~~l~~~~~~~lg~~~~~al 268 (580)
..+.+.. ++....+++++.++.+.++.++.
T Consensus 267 ~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~ 299 (352)
T COG3180 267 PAILVSIIALMAIAAGMAGLLSWLTGIDLNTAY 299 (352)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3332222 22222333344556677765443
No 95
>COG0679 Predicted permeases [General function prediction only]
Probab=78.02 E-value=83 Score=32.93 Aligned_cols=110 Identities=26% Similarity=0.234 Sum_probs=69.9
Q ss_pred hcCCcHHHHHHHHHHhhCcCCCCCCCc-hHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHH--HHHHHHHHH
Q 047751 177 CAGQPVITGYLLAGSVIGPGGFSFVSE-MVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLL--QIFLFMCLC 253 (580)
Q Consensus 177 rl~lP~ivg~IlaGilLGPs~Lg~i~~-~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~~--~~ll~~~l~ 253 (580)
-++.|.+.+. +.|+++...++..-+. ...++.+++-..-+.++..|+.++....++...+....+.. -++.| ++.
T Consensus 165 ~~~nP~i~a~-i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~P-l~~ 242 (311)
T COG0679 165 LLTNPLIIAL-ILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAP-LVA 242 (311)
T ss_pred HHhCcHHHHH-HHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHH-HHH
Confidence 3667888876 5677776544433222 35689999999999999999999997777776666666655 33445 344
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhccHHHHHHHHhhh
Q 047751 254 GIIASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMER 289 (580)
Q Consensus 254 ~~~~~~lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~ 289 (580)
..+.+.+|.+..+. -+....+..-+++..-++.+.
T Consensus 243 ~~~~~~~~l~~~~~-~v~vl~~a~P~A~~~~v~a~~ 277 (311)
T COG0679 243 LLVAKLLGLSGLAL-QVLVLLSAMPTAVNAYVLARQ 277 (311)
T ss_pred HHHHHHcCCChHHH-HHHHHHhhCcHHhHHHHHHHH
Confidence 45677788765443 333333333344444444443
No 96
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=77.88 E-value=80 Score=31.67 Aligned_cols=108 Identities=21% Similarity=0.212 Sum_probs=78.3
Q ss_pred hHHHhHHhH-HHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHH
Q 047751 415 HTLEQVEPI-RNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEF 493 (580)
Q Consensus 415 ~l~~~l~~i-~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~ 493 (580)
.+..-++|- -.+-.|+| =+.+.+..+|..++..+++..+.-++..++.++.+|.+.. +-.++.||+..
T Consensus 63 ~i~~lLgPAtVAlAvPLY-------kq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~----~~~Sl~PkSvT 131 (230)
T COG1346 63 WINFLLGPATVALAVPLY-------KQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE----LILSLLPKSVT 131 (230)
T ss_pred HHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHhcccccc
Confidence 344444553 24555653 3456667788877777777777888899999999998854 23347899999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047751 494 AFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI 533 (580)
Q Consensus 494 ~lvla~~a~~~gii~~~~~~~lv~~vllS~l~~Pll~~l~ 533 (580)
.-+-.....+.|-+.+-+...++.+-++..+++|.+.|+.
T Consensus 132 TpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 132 TPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred cHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888889999988886666556667777888888887776
No 97
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=77.79 E-value=1e+02 Score=32.78 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCC-CCC------chHHHHHHHHHHH------HHHHHHHhhcC
Q 047751 160 DLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFS-FVS------EMVQVETVAQFGV------IFLLFALGLEF 226 (580)
Q Consensus 160 ~l~lil~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg-~i~------~~~~le~la~lGl------i~llF~~GLel 226 (580)
++..+.+...+...-.+|---|.+.-.|-.|+++.+..+. ..+ ....++.+-+.|+ .++.+-+|.-.
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIGAmt 83 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMDQPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIGAMT 83 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhcccccccCCCChHHHHHHHhhhcchhhHHHHHHHhHHH
Confidence 3444555555555555666788889999999999865432 111 1123444444433 34666789999
Q ss_pred ChhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhccH
Q 047751 227 STAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSST 279 (580)
Q Consensus 227 d~~~l~~~~~~av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~TS~ 279 (580)
|..-+-.+.|..+..+..++-+. .....+.++|++..++..+|++-..=.|
T Consensus 84 DFgpllanP~~~llGaaAQ~Gif--~t~~~A~~lGf~~~eAAsIgIIGgADGP 134 (360)
T PF03977_consen 84 DFGPLLANPKTLLLGAAAQFGIF--ATFLGAILLGFTPKEAASIGIIGGADGP 134 (360)
T ss_pred hhHHHHhCHHHHHHHHHHHHhHH--HHHHHHHHhCCCHHHhhHhhhcccCCCc
Confidence 99999988888877777775442 3344566779999999888887765443
No 98
>PRK01658 holin-like protein; Validated
Probab=75.80 E-value=44 Score=30.17 Aligned_cols=98 Identities=18% Similarity=0.253 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcHH---HHHHHHHHhhCcCCCCCCCchHHHHH-----HHHHHHHHHHHHHhhcC
Q 047751 155 LRLISDLVVVIVSATCGGIAFACAGQPVI---TGYLLAGSVIGPGGFSFVSEMVQVET-----VAQFGVIFLLFALGLEF 226 (580)
Q Consensus 155 ~~li~~l~lil~~a~l~~~l~~rl~lP~i---vg~IlaGilLGPs~Lg~i~~~~~le~-----la~lGli~llF~~GLel 226 (580)
++.+.|+.+++.+..++..+.+.+++|-. +|.++-=+.+ ..+.++. ++++. +.++++.|+==.+|+=-
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L---~~~~ik~-~~v~~~a~~Ll~~m~llFVPa~VGi~~ 79 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLL---SFKILKL-KWIELGAETLLAELPLFFIPSAVGVMN 79 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---HhCCcCH-HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 45678999888888888888887776643 3333211111 1233332 23333 34555555555577766
Q ss_pred ChhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 047751 227 STAKLRVVRAVAILGGLLQIFLFMCLCGII 256 (580)
Q Consensus 227 d~~~l~~~~~~av~ia~~~~ll~~~l~~~~ 256 (580)
..+.+++.+...+...+.++++.+++++.+
T Consensus 80 ~~~ll~~~~~~il~~ivvsT~l~l~vtg~~ 109 (122)
T PRK01658 80 YGDFLSSKGISLFLVVVISTFVVMIVTGYL 109 (122)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666666666655555555443
No 99
>PRK01821 hypothetical protein; Provisional
Probab=74.35 E-value=47 Score=30.49 Aligned_cols=99 Identities=10% Similarity=0.178 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCcHH---HHHHHHHHhhCcCCCCCCCchHHHHH-----HHHHHHHHHHHHHhhc
Q 047751 154 DLRLISDLVVVIVSATCGGIAFACAGQPVI---TGYLLAGSVIGPGGFSFVSEMVQVET-----VAQFGVIFLLFALGLE 225 (580)
Q Consensus 154 d~~li~~l~lil~~a~l~~~l~~rl~lP~i---vg~IlaGilLGPs~Lg~i~~~~~le~-----la~lGli~llF~~GLe 225 (580)
-++.+.++.+++.+..++..+.+-+++|-. +|.++-=+.+ ..+.++. ++++. +.++++.|+==.+|+=
T Consensus 8 ~~~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L---~~~~vk~-~~v~~~a~~LL~~m~LfFVPa~VGim 83 (133)
T PRK01821 8 IWQYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLL---ALQILPA-KWVKPGCSLLIRYMALLFVPIGVGVM 83 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH---HhCCcCH-HHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 356788999999999998888888876533 3332211111 1233332 23333 3455555555557776
Q ss_pred CChhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 047751 226 FSTAKLRVVRAVAILGGLLQIFLFMCLCGII 256 (580)
Q Consensus 226 ld~~~l~~~~~~av~ia~~~~ll~~~l~~~~ 256 (580)
-..+.+++.+...+...+.++++.+++++.+
T Consensus 84 ~~~~ll~~~~~~il~~ivvST~lvl~vtg~~ 114 (133)
T PRK01821 84 QYYDLLRAQFGPIVVSCIVSTLVVLLVVGWS 114 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777666665555655555554443
No 100
>PRK10711 hypothetical protein; Provisional
Probab=74.26 E-value=59 Score=32.77 Aligned_cols=90 Identities=10% Similarity=0.065 Sum_probs=64.2
Q ss_pred hHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 047751 440 HVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTT 519 (580)
Q Consensus 440 d~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~v 519 (580)
+.+.+.++|..++..+.+..+.-++.+++.++.+|.+.. +-.+|.+|+...=+-..+..+.|-+..-.-...+.+-
T Consensus 80 q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~----~~~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitG 155 (231)
T PRK10711 80 QLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPE----IAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVG 155 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 345566666666666666677778888889999998754 3344799999888888888888776544444444555
Q ss_pred HHHHHHHHHHHHhh
Q 047751 520 ALSLVTTPLLFKLI 533 (580)
Q Consensus 520 llS~l~~Pll~~l~ 533 (580)
++..+++|.+.|+.
T Consensus 156 i~Ga~~g~~llk~~ 169 (231)
T PRK10711 156 ILGAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHHHHHc
Confidence 66778888887775
No 101
>COG0679 Predicted permeases [General function prediction only]
Probab=73.79 E-value=1.2e+02 Score=31.70 Aligned_cols=137 Identities=23% Similarity=0.185 Sum_probs=91.1
Q ss_pred chHHHHHHHHHHHhcCC--CchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 047751 394 LSLELGSFAAGVMISTT--DLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVD-ILLAAVLLVIVVKTVVVATVI 470 (580)
Q Consensus 394 ls~~lGaFvaGl~l~~~--~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~-~~l~~vl~~~~~K~l~~~l~~ 470 (580)
.+|.+=+.+.|+.+... +..+.+.+-++.+.+.-.|+=.+..|+.++......... ........-.+..++..+...
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~ 246 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVA 246 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 47777778888888742 444566777888899999999999999999854433322 233333335677788888889
Q ss_pred hhcCCChHHHH-HHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047751 471 KGFRYSNKTSL-LVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI 533 (580)
Q Consensus 471 ~~~~~~~r~a~-~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~vllS~l~~Pll~~l~ 533 (580)
+.++.+.-+.. .+=....|.+....+ .+.+.+.-.+.....+..++.++.++.|.+....
T Consensus 247 ~~~~l~~~~~~v~vl~~a~P~A~~~~v---~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 247 KLLGLSGLALQVLVLLSAMPTAVNAYV---LARQYGGDPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred HHcCCChHHHHHHHHHhhCcHHhHHHH---HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998755441 111213455544444 4445665555666666678899999998877654
No 102
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=73.73 E-value=24 Score=37.15 Aligned_cols=94 Identities=23% Similarity=0.265 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHHHhhcC--ChhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 047751 183 ITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEF--STAKLRVVRAVAILGGLLQIFLFMCLCGIIASLC 260 (580)
Q Consensus 183 ivg~IlaGilLGPs~Lg~i~~~~~le~la~lGli~llF~~GLel--d~~~l~~~~~~av~ia~~~~ll~~~l~~~~~~~l 260 (580)
++|-++.|.+-||.+...+++ ..+.+=.--+.+++...|++- +++.+|+.++..+..++..-++--.++..+++++
T Consensus 183 LlGgliIG~~~g~~g~~~i~p--f~~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~~Pli~a~ig~~lg~~~ 260 (327)
T PF05982_consen 183 LLGGLIIGFLAGPEGVESIKP--FFVDLFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGILMPLINALIGIGLGWLL 260 (327)
T ss_pred HHHHHHHhheeCccchhhccc--hhhccHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777778876654443 233333445667788888864 3345555555555444433333333444566788
Q ss_pred CCChHHHHHHHHHHhhcc
Q 047751 261 GGKPSEGVFVGVLLSMSS 278 (580)
Q Consensus 261 g~~~~~al~ig~~ls~TS 278 (580)
|.+...+.+++...+..|
T Consensus 261 gls~Gg~~llavLaASAS 278 (327)
T PF05982_consen 261 GLSPGGAVLLAVLAASAS 278 (327)
T ss_pred CCCCccHHHHHHHHhhHh
Confidence 988876666655554433
No 103
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=73.54 E-value=42 Score=39.81 Aligned_cols=243 Identities=18% Similarity=0.072 Sum_probs=128.1
Q ss_pred CCCCcccHHHHHHHHHHhhccccccccCCCCCCcccccccc----------------cceeeeeeeee---ccccccccc
Q 047751 48 TGSKEDSFADMIDRALEKEFNESEQNEAADPGSFNNSVAGQ----------------QAVLETVARVK---NKKNETKEE 108 (580)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~---~~~~~~~~~ 108 (580)
....+++.++..++.++++|.........+-.+|+..+... .+.++.++.+. -+.+.++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~ 213 (769)
T KOG1650|consen 134 AFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSEL 213 (769)
T ss_pred hhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccC
Confidence 55667789999999999999777666777889999888776 46677776663 111222211
Q ss_pred c------c--cccccccccCCCCCCCCCCeeeecCCCeeeecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 047751 109 K------S--FQFHDVFNLDNENGAEDTPTLIDRKDNVFIISNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAG- 179 (580)
Q Consensus 109 ~------~--~~~~~~~~~~~~~~~~~~~~lid~~~~~~~~~~p~~~~p~l~~d~~li~~l~lil~~a~l~~~l~~rl~- 179 (580)
+ . +.....|.+..+..-......++++ +- -.+|.... .+...++.......+..-++
T Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr-~p--e~~~~~~~-----------~~~~~l~~vl~~~~~~~~~~~ 279 (769)
T KOG1650|consen 214 KLSPLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKR-TP--EGKPVSDA-----------YICVTLLGVLASAFLTDLIGG 279 (769)
T ss_pred CCcchHHHHHHHHHHHHHHheeeehhhhHHHHhhc-CC--CCCccccc-----------eehhhHHHHHHHHHHHHHhcc
Confidence 1 1 2233333333333211122222221 10 01111110 01111112222233444444
Q ss_pred CcHHHHHHHHHHhhC---cCCCCCCCchHHHHHH-HHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 047751 180 QPVITGYLLAGSVIG---PGGFSFVSEMVQVETV-AQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGI 255 (580)
Q Consensus 180 lP~ivg~IlaGilLG---Ps~Lg~i~~~~~le~l-a~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~~ll~~~l~~~ 255 (580)
+++++|..+.|+.+- |.+-.+ .+-+|.+ .++-+-++....|++.|+..+.+ +.............-++.+..
T Consensus 280 i~~~~Gaf~~Gl~iP~~~p~g~~L---~ekle~~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~ 355 (769)
T KOG1650|consen 280 IHSIFGAFILGLAIPHGPPLGSAL---IEKLEDLVSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLG 355 (769)
T ss_pred ccccchhheEEEecCCCCchhHHH---HHHHHHHHHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666552 211111 1223333 35566667778899999999988 332222222223334444455
Q ss_pred HHHhcCCChHHHHHHHHHHhhccH--HHHHHHHhhhcccCcchHHHHHHHHHHHH
Q 047751 256 IASLCGGKPSEGVFVGVLLSMSST--AVVLKFLMERNSISALHGQVTIGTLILQD 308 (580)
Q Consensus 256 ~~~~lg~~~~~al~ig~~ls~TS~--~Vv~~iL~e~~~~~s~~g~l~ls~avl~D 308 (580)
.+.+++.++.+++.+|.+++.=.. -++...-.|.+..+.+.-.+..=.++++-
T Consensus 356 ~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~t 410 (769)
T KOG1650|consen 356 TSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVST 410 (769)
T ss_pred HHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHHHHHHHH
Confidence 566789999999999999886443 23444555666655554434333333333
No 104
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=68.92 E-value=1.3e+02 Score=30.23 Aligned_cols=90 Identities=12% Similarity=0.090 Sum_probs=66.9
Q ss_pred hHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 047751 440 HVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTT 519 (580)
Q Consensus 440 d~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~v 519 (580)
+.+.+.++|..++..+.+..+.-++.++..++.+|.+.. +-.+|.+|+...=+-..++.+.|-+..-.....+.+-
T Consensus 85 q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKSVTtPIAm~is~~iGG~psLtA~~ViitG 160 (232)
T PRK04288 85 KRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQAATTAIALPVSAGIGGIKEITSFAVIFNA 160 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 455566677767666677777788888889999998853 3345799999988888888888876655544455566
Q ss_pred HHHHHHHHHHHHhh
Q 047751 520 ALSLVTTPLLFKLI 533 (580)
Q Consensus 520 llS~l~~Pll~~l~ 533 (580)
++..+++|.+.|+.
T Consensus 161 i~Gai~g~~llk~~ 174 (232)
T PRK04288 161 VIIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHHHHc
Confidence 77788888887775
No 105
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=68.91 E-value=77 Score=33.78 Aligned_cols=132 Identities=14% Similarity=0.079 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHhcCCCc------hhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhH--HHHHHHHHHHHHHHHHHHHH
Q 047751 395 SLELGSFAAGVMISTTDL------AQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWN--HVDILLAAVLLVIVVKTVVV 466 (580)
Q Consensus 395 s~~lGaFvaGl~l~~~~~------~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~--~~~~~l~~vl~~~~~K~l~~ 466 (580)
++.+=+.++|+++.-.+. .+-+.+-++.+.+...|+=.+.+|..+....... .+......++..++.-++.+
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~ 323 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIG 323 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 555555666666654321 1456667788889999999999999987543321 12222333556666667777
Q ss_pred HHHHhhcCCChHHHHHHHH-HHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 047751 467 ATVIKGFRYSNKTSLLVGM-SLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLL 529 (580)
Q Consensus 467 ~l~~~~~~~~~r~a~~lgl-~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~vllS~l~~Pll 529 (580)
+...+.++.+......+-+ .-.|-+.. ...++..++.-+++.-..+..+.+++.++.|++
T Consensus 324 ~~~~~~~~l~~~~~~~~~~~~~~P~a~~---~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 384 (385)
T PF03547_consen 324 IGIVFLLGLDGDMARVLILQAAMPTAIN---SFVIASLYGLDEEEASSIVFWSTLLSIPTLPLW 384 (385)
T ss_pred HHHHHHHCCCHHHHHHHHHhccCCchHH---HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766443221111 12344433 333444556555566556666777788877764
No 106
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=67.84 E-value=55 Score=29.90 Aligned_cols=97 Identities=13% Similarity=0.200 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcHH---HHHHHHHHhhCcCCCCCCCchHHHH-----HHHHHHHHHHHHHHhhcC
Q 047751 155 LRLISDLVVVIVSATCGGIAFACAGQPVI---TGYLLAGSVIGPGGFSFVSEMVQVE-----TVAQFGVIFLLFALGLEF 226 (580)
Q Consensus 155 ~~li~~l~lil~~a~l~~~l~~rl~lP~i---vg~IlaGilLGPs~Lg~i~~~~~le-----~la~lGli~llF~~GLel 226 (580)
.+++.|+.+++.+.+++.++.+-+++|-. +|.++-=.++ ..+.++ .+.+| .+++.++.|+==.+|.=-
T Consensus 5 ~~~~~q~~ii~~~~~~G~~i~~~l~lplPGsIiGmvLLfllL---~~~iv~-l~wv~~~a~~Ll~~m~llFVPa~VgVm~ 80 (128)
T COG1380 5 MQILRQLAIILGFLFLGEWIASLLHLPLPGSIIGMVLLFLLL---ALKIVK-LEWVERGATFLLRNMALLFVPAGVGVMN 80 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHH---HhCCcc-HHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 45788999999999999999998877743 2332211111 123332 22232 334444444433455544
Q ss_pred ChhHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 047751 227 STAKLRVVRAVAILGGLLQIFLFMCLCGI 255 (580)
Q Consensus 227 d~~~l~~~~~~av~ia~~~~ll~~~l~~~ 255 (580)
..+.+++.+.+.+...+.++++.+.+++.
T Consensus 81 y~~~l~~~~~~Il~~~iiST~lv~~vtg~ 109 (128)
T COG1380 81 YFDLLAADGLPILVVIIISTLLVLLVTGW 109 (128)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 55556666655555555555554444443
No 107
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=67.18 E-value=1.7e+02 Score=31.62 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHH
Q 047751 425 NFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSR 500 (580)
Q Consensus 425 ~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~ 500 (580)
+++-|+-|.-+|..+|+..+..++...+..-..+=++ +..+++.+...|++.+|+-.+|..=+.-|-.++.+.+.
T Consensus 105 gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~G-iF~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~k 179 (399)
T TIGR03136 105 SLVACILFFGIGAMSDISFILARPWASITVALFAEMG-TFATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASLI 179 (399)
T ss_pred ccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhh-HHHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHHh
Confidence 5888899999999999998876554333211122222 23445556677999999999998767777777776664
No 108
>COG3329 Predicted permease [General function prediction only]
Probab=64.37 E-value=1e+02 Score=32.35 Aligned_cols=137 Identities=15% Similarity=0.090 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHHhcCCCchhhHHHhHHhHHHHHHHHHHHHHhh----hhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047751 394 LSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGM----LIHVHFLWNHVDILLAAVLLVIVVKTVVVATV 469 (580)
Q Consensus 394 ls~~lGaFvaGl~l~~~~~~~~l~~~l~~i~~~f~plFFv~iGl----~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~ 469 (580)
+++.+.-|+.|++++.....-++- +.+...+.-.....+|. .+..+.+..........+.+.++.-++..++.
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP---~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l 92 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIP---EAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLL 92 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCc---hHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888887532111111 12222222222334444 34444443333333344445556667778888
Q ss_pred HhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH--HHHHHHHHHHHHhh
Q 047751 470 IKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTT--ALSLVTTPLLFKLI 533 (580)
Q Consensus 470 ~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~v--llS~l~~Pll~~l~ 533 (580)
.++.+++..|+..++-.-+..+...+..+..-.+.--+.-+-|...+... .=..+++-++...|
T Consensus 93 ~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~lalMeiPallval~l~~~y 158 (372)
T COG3329 93 RKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLALMEIPALLVALVLANIY 158 (372)
T ss_pred HHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 88889999999998877777777777777666655445556555443321 11334444455555
No 109
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=63.34 E-value=2.2e+02 Score=30.71 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHhhCcCCCCC----------CC-------------chHHHHHHHHHHH
Q 047751 159 SDLVVVIVSATCGGIAFACAGQPVITGYLLAGSVIGPGGFSF----------VS-------------EMVQVETVAQFGV 215 (580)
Q Consensus 159 ~~l~lil~~a~l~~~l~~rl~lP~ivg~IlaGilLGPs~Lg~----------i~-------------~~~~le~la~lGl 215 (580)
-++..+++...+...-.+|=--|.+.-.|-.|+++.+..+.+ ++ +...++.+-++|+
T Consensus 23 ~~~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~~gi 102 (399)
T TIGR03136 23 TRLALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYNFTF 102 (399)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHHHHH
Confidence 345555555555544455666788888888999888654310 01 0122333333333
Q ss_pred ------HHHHHHHhhcCChhHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhhccH
Q 047751 216 ------IFLLFALGLEFSTAKLRVVRAVAIL-GGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSMSST 279 (580)
Q Consensus 216 ------i~llF~~GLeld~~~l~~~~~~av~-ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~TS~ 279 (580)
.++.+-+|.-.|..-+-.+.|..+. .+..++-+. .....+.++|++..++..+|++-..-.|
T Consensus 103 ~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF--~t~~~A~~lGF~~~eAAsIgIIGgADGP 171 (399)
T TIGR03136 103 SNSLVACILFFGIGAMSDISFILARPWASITVALFAEMGTF--ATLVIGYYCGLTPGEAAAVGTIGGADGP 171 (399)
T ss_pred hcccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHH--HHHHHHHHcCCCHHHhhHHhhcccCCcc
Confidence 3355568888999999888888877 456664432 2334456679999998888887765443
No 110
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=62.47 E-value=1.5e+02 Score=33.94 Aligned_cols=74 Identities=9% Similarity=0.207 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHH-HHHHHHHh--------hcCCChHHHHHHHHHHHhHHHH
Q 047751 423 IRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKT-VVVATVIK--------GFRYSNKTSLLVGMSLAQIGEF 493 (580)
Q Consensus 423 i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~-l~~~l~~~--------~~~~~~r~a~~lgl~L~~rG~~ 493 (580)
+-.+++|.-..-.|..++...+..++..++.+.+..++.-. +.++.... ..+.++.+++.+|..+++-.-+
T Consensus 68 f~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPV 147 (559)
T TIGR00840 68 FFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPV 147 (559)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchH
Confidence 34578888888999999999888776544333322222222 22221111 1256899999999999988866
Q ss_pred HHH
Q 047751 494 AFV 496 (580)
Q Consensus 494 ~lv 496 (580)
+..
T Consensus 148 AVl 150 (559)
T TIGR00840 148 AVL 150 (559)
T ss_pred HHH
Confidence 554
No 111
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=53.01 E-value=1.9e+02 Score=26.82 Aligned_cols=43 Identities=14% Similarity=0.296 Sum_probs=23.1
Q ss_pred HHhHHhHHHHH---HHHHH--HHHhhhhhHHhHhHHHHHHHHHHHHHH
Q 047751 417 LEQVEPIRNFF---AALFL--ASIGMLIHVHFLWNHVDILLAAVLLVI 459 (580)
Q Consensus 417 ~~~l~~i~~~f---~plFF--v~iGl~id~~~l~~~~~~~l~~vl~~~ 459 (580)
.+.+++-.+++ +|+|| +.+|..-..+.+..+++.+++.+++..
T Consensus 55 ~~~v~~~a~~LL~~m~LfFVPagVGim~~~~ll~~~~~~Il~~ivvST 102 (141)
T PRK04125 55 LEQVESLGTALTNNIGFLFVPSGISVINSLGVMSQYPVQIIGVIIVAT 102 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455554433 56777 456665666666666654444443333
No 112
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=51.90 E-value=1.1e+02 Score=32.23 Aligned_cols=72 Identities=19% Similarity=0.115 Sum_probs=50.1
Q ss_pred HHHHHHHHhhCcCCCCCCCc--hHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 047751 184 TGYLLAGSVIGPGGFSFVSE--MVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLC 260 (580)
Q Consensus 184 vg~IlaGilLGPs~Lg~i~~--~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~~ll~~~l~~~~~~~l 260 (580)
+-.++.|+++|+. ++ .+.+..-...-..|+-|..|-.+|++.+.+.+-.-+.+++...+++....++...++
T Consensus 175 ilPlliG~ilGNL-----D~~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~~~dr~~ 248 (314)
T TIGR00793 175 VLPFLVGFALGNL-----DPELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLILADKFI 248 (314)
T ss_pred HHHHHHHHHHhcC-----CHHHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHh
Confidence 3456789999962 22 233444445667788999999999999998888777777766666655555555555
No 113
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=49.89 E-value=76 Score=29.85 Aligned_cols=85 Identities=20% Similarity=0.178 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHhcCCC----chhhHHHh-HHhHHHHHHHHHHHHHhhhhhHHhHh---HHH--HHHHHHHHHHHHHHHH
Q 047751 395 SLELGSFAAGVMISTTD----LAQHTLEQ-VEPIRNFFAALFLASIGMLIHVHFLW---NHV--DILLAAVLLVIVVKTV 464 (580)
Q Consensus 395 s~~lGaFvaGl~l~~~~----~~~~l~~~-l~~i~~~f~plFFv~iGl~id~~~l~---~~~--~~~l~~vl~~~~~K~l 464 (580)
...-|++++|+++++-. ..-++-.. .+.++++.+.+|...+|++.-.+++. +.. .+.....++.++.-.+
T Consensus 22 G~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~ 101 (154)
T TIGR01625 22 GNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLL 101 (154)
T ss_pred cccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 33457888888887642 22223222 34468899999999999999876653 222 2222223333344455
Q ss_pred HHHHHHhhcCCChHH
Q 047751 465 VVATVIKGFRYSNKT 479 (580)
Q Consensus 465 ~~~l~~~~~~~~~r~ 479 (580)
..++..+.+|+|.-.
T Consensus 102 ~~~~~~~~~~~~~~~ 116 (154)
T TIGR01625 102 VAVALIKLLRINYAL 116 (154)
T ss_pred HHHHHHHHhCCCHHH
Confidence 666666788988653
No 114
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=49.28 E-value=1.5e+02 Score=31.52 Aligned_cols=74 Identities=16% Similarity=0.105 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------ChHHHHHHHHHHHhHHHHHHHH
Q 047751 424 RNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRY------SNKTSLLVGMSLAQIGEFAFVL 497 (580)
Q Consensus 424 ~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~~~~------~~r~a~~lgl~L~~rG~~~lvl 497 (580)
.+++-|+-|.-+|..+|+..+..++...+.. ..+=+ -+..+++.+...|+ +.+|+-.+|..=+.-|-.++.+
T Consensus 62 ~~l~P~LIFlGIGAmtDFgpllanP~~~llG-aaAQ~-GiF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~ 139 (354)
T TIGR01109 62 SGIAPLLIFMGIGALTDFGPLLANPRTLLLG-AAAQF-GIFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTAIYL 139 (354)
T ss_pred cchHHHHHHHhccHHhhhHHHHhChHHHHHH-HHHHh-hHHHHHHHHHHhCCCcccccChhhceeeeeeccCCCchhhhh
Confidence 3688899999999999999887555322111 11111 12334455555666 6788888887656666666665
Q ss_pred HH
Q 047751 498 LS 499 (580)
Q Consensus 498 a~ 499 (580)
.+
T Consensus 140 s~ 141 (354)
T TIGR01109 140 SG 141 (354)
T ss_pred Hh
Confidence 55
No 115
>COG3329 Predicted permease [General function prediction only]
Probab=48.82 E-value=3.2e+02 Score=28.78 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhCcCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047751 182 VITGYLLAGSVIGPGGFSFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASLCG 261 (580)
Q Consensus 182 ~ivg~IlaGilLGPs~Lg~i~~~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~~ll~~~l~~~~~~~lg 261 (580)
+.+...+.|++..-..-.+.-+...-+.++-.-+.-+=|..|.|++.+.+...-........++++++++.-+.+.-+.+
T Consensus 18 P~llFf~~Gmlia~~ksdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l~kl~~ 97 (372)
T COG3329 18 PTLLFFILGMLIAAFKSDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLLRKLPK 97 (372)
T ss_pred chHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34555677777654322222233333333333333333445556666666544444444444455555444444433445
Q ss_pred CChHHHHHHHHHHhhcc---HHHHHHHHhhhcccCcchHHHHHHHHHHHHH
Q 047751 262 GKPSEGVFVGVLLSMSS---TAVVLKFLMERNSISALHGQVTIGTLILQDC 309 (580)
Q Consensus 262 ~~~~~al~ig~~ls~TS---~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv 309 (580)
.+...+...+..-...| ++.....|.|.|. .+.-..-+...+-|+
T Consensus 98 vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~gi---ayeaym~A~lalMei 145 (372)
T COG3329 98 VDTVDAAATAGTYGSVSAVTFAAAVTFLEESGI---AYEAYMPAMLALMEI 145 (372)
T ss_pred cchHHHHHHHhhccchhHHHHHHHHHHHHHcCc---cHHHHHHHHHHHhhc
Confidence 56666666666554443 4555667777664 343444444445554
No 116
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=48.12 E-value=1.8e+02 Score=31.61 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHhHh
Q 047751 423 IRNFFAALFLASIGMLIHVHFLW 445 (580)
Q Consensus 423 i~~~f~plFFv~iGl~id~~~l~ 445 (580)
++|-++.+||..+|+.+.-+...
T Consensus 60 iNDgLMaiFFf~vGLEiKrE~~~ 82 (383)
T PRK14854 60 INDGLMAIYFLYIGLEIKREIIV 82 (383)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999976653
No 117
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=47.49 E-value=4.3e+02 Score=29.16 Aligned_cols=37 Identities=16% Similarity=0.043 Sum_probs=27.5
Q ss_pred cHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHH
Q 047751 278 STAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLL 314 (580)
Q Consensus 278 S~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~ll 314 (580)
=+|++....+..|..+.+.--.+++++.+.|..+.++
T Consensus 116 lTPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~L 152 (423)
T PF02040_consen 116 LTPIVLALARRLGLNPKPPLPFLFACAFIANTASLLL 152 (423)
T ss_pred hHHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccc
Confidence 3678888888887655444457889999999887764
No 118
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=44.87 E-value=2.8e+02 Score=28.56 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhhhHHhHhHHH---HHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH---HHhHHHHHHHHHHHH
Q 047751 428 AALFLASIGMLIHVHFLWNHV---DILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMS---LAQIGEFAFVLLSRA 501 (580)
Q Consensus 428 ~plFFv~iGl~id~~~l~~~~---~~~l~~vl~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~---L~~rG~~~lvla~~a 501 (580)
+.+-+...|+.++.+.+.... ......++.-++.-++.++...+.++.+... ..|+. ..|-|..+.+.+...
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~--~~glvL~~~~P~~~~s~v~t~~~ 91 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPEL--AVGVLIVGCCPGGTASNVFTYLL 91 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHHheeeCCCchHHHHHHHHh
Confidence 334456677777777665432 2333333444556666667666666665332 22222 234454544443332
Q ss_pred HhCCCChHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 047751 502 SNLHLVEGKLYL-LLLGTTALSLVTTPLLFKLI 533 (580)
Q Consensus 502 ~~~gii~~~~~~-~lv~~vllS~l~~Pll~~l~ 533 (580)
|- |.+.-. ....+++++.++.|++..++
T Consensus 92 ---~g-n~~la~~~~~~stlls~vt~Pl~l~~~ 120 (286)
T TIGR00841 92 ---KG-DMALSISMTTCSTLLALGMMPLLLYIY 120 (286)
T ss_pred ---CC-CHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 21 112222 22345666777777766665
No 119
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=42.04 E-value=4.6e+02 Score=28.96 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHhH
Q 047751 423 IRNFFAALFLASIGMLIHVHFL 444 (580)
Q Consensus 423 i~~~f~plFFv~iGl~id~~~l 444 (580)
++|-++.+||..+|+.+.-+.+
T Consensus 66 iNDgLMaiFFf~vGLEiKrE~~ 87 (423)
T PRK14853 66 AADGLLAIFFFVVGLELKREFV 87 (423)
T ss_pred HHHhhHHHHHHHHHHHHhHHHh
Confidence 4789999999999999976554
No 120
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=41.96 E-value=5.1e+02 Score=28.49 Aligned_cols=143 Identities=18% Similarity=0.193 Sum_probs=76.0
Q ss_pred HhCchHHHHHHHHHHHhcCCCchhhHHHhHHhH------HHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHH
Q 047751 391 KLGLSLELGSFAAGVMISTTDLAQHTLEQVEPI------RNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTV 464 (580)
Q Consensus 391 ~lGls~~lGaFvaGl~l~~~~~~~~l~~~l~~i------~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l 464 (580)
++|...++.-|....++-.+-..+...+.++.+ -+++....-+-+=+.+|-..+.+...-....++...++-.+
T Consensus 57 yiGGg~il~~f~ps~Lv~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~ 136 (414)
T PF03390_consen 57 YIGGGAILCIFVPSALVYFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFL 136 (414)
T ss_pred cCChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666554445555555554 24555544444444455555555443334444455566677
Q ss_pred HHHHHHhhcCCChHHHHH-HHHH-HH-hHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHH----HHHHHHHHHHhh
Q 047751 465 VVATVIKGFRYSNKTSLL-VGMS-LA-QIGEFAFVLLS-RASNLHLVEGKLYLLLLGTTAL----SLVTTPLLFKLI 533 (580)
Q Consensus 465 ~~~l~~~~~~~~~r~a~~-lgl~-L~-~rG~~~lvla~-~a~~~gii~~~~~~~lv~~vll----S~l~~Pll~~l~ 533 (580)
.+.++...+|++.+|+++ +.+= |+ -.|+-++=+.. .+.-.|.-.++.|+.++-++.+ ..+.+-++.|+-
T Consensus 137 ~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg 213 (414)
T PF03390_consen 137 LGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLG 213 (414)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777888889999999864 2221 11 11221121211 2222354455666666655444 445566666664
No 121
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=40.62 E-value=4.5e+02 Score=27.53 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCCchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhH
Q 047751 397 ELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWN 446 (580)
Q Consensus 397 ~lGaFvaGl~l~~~~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~ 446 (580)
++.+.+.|...|....... .-+.|....+...+-|...|++++.+.+..
T Consensus 7 l~~ai~la~~~P~~g~~~~-~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~ 55 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGG-VIKPEYVIKYGVALIFFISGLSLPTEELKA 55 (313)
T ss_pred HHHHHHHHHHcCcccccCC-ccchhhhHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4556667777776422111 111233444446666777899998887753
No 122
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=39.70 E-value=3.1e+02 Score=30.54 Aligned_cols=106 Identities=16% Similarity=0.132 Sum_probs=60.0
Q ss_pred HHHHHHHhCchHHHHHHHHHHHhcCCCchh-hHH-HhHHh-HHHHHHHHHHHHHhhhhhHHhHhHHHHH-HHHHHHHHHH
Q 047751 385 VAWCSDKLGLSLELGSFAAGVMISTTDLAQ-HTL-EQVEP-IRNFFAALFLASIGMLIHVHFLWNHVDI-LLAAVLLVIV 460 (580)
Q Consensus 385 ~~~lae~lGls~~lGaFvaGl~l~~~~~~~-~l~-~~l~~-i~~~f~plFFv~iGl~id~~~l~~~~~~-~l~~vl~~~~ 460 (580)
++-++..+|....+=-...|++......+. +.. ..+.. ++.+.+.+-..--|++++.+.+....+. +...++.+.+
T Consensus 22 ~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~ 101 (574)
T COG3263 22 SSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLI 101 (574)
T ss_pred HHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHH
Confidence 344445555555555555666665533221 110 11222 2445555555667888887777544332 3333444445
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHhH
Q 047751 461 VKTVVVATVIKGFRYSNKTSLLVGMSLAQI 490 (580)
Q Consensus 461 ~K~l~~~l~~~~~~~~~r~a~~lgl~L~~r 490 (580)
.-.+....+.+.++.+|-|++.+|...+.-
T Consensus 102 Ts~Ltg~aA~~ll~l~wle~~LiGAiVgST 131 (574)
T COG3263 102 TSGLTGVAAAYLLNLDWLEGLLIGAIVGST 131 (574)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhhccc
Confidence 555556666778899999999999866544
No 123
>COG2985 Predicted permease [General function prediction only]
Probab=39.48 E-value=1.2e+02 Score=33.76 Aligned_cols=104 Identities=15% Similarity=0.174 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhCcCCCCCCC------chHHHHHHHHHHHHHHHHHHhhcCChhH---HHHhhhHHHHHHHHHHHHHHHH
Q 047751 182 VITGYLLAGSVIGPGGFSFVS------EMVQVETVAQFGVIFLLFALGLEFSTAK---LRVVRAVAILGGLLQIFLFMCL 252 (580)
Q Consensus 182 ~ivg~IlaGilLGPs~Lg~i~------~~~~le~la~lGli~llF~~GLeld~~~---l~~~~~~av~ia~~~~ll~~~l 252 (580)
..-|.+++|+++|- +|.+. +......+.++|+.++|=-+|++---+. +-..+-.....+.+-.++|.+.
T Consensus 397 ~aGGpLivaLiLG~--ig~iGpl~w~mP~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~ 474 (544)
T COG2985 397 NAGGPLIVALILGF--IGAIGPLTWFMPPGALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVII 474 (544)
T ss_pred ccccHHHHHHHHHH--hcccCceEEEcChhHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHHHHHHH
Confidence 34578888888884 33332 4567889999999887777777643332 2233344445555556677777
Q ss_pred HHHHH-HhcCCChHHHHHHHHHH-hhccHHHHHHHHhhhc
Q 047751 253 CGIIA-SLCGGKPSEGVFVGVLL-SMSSTAVVLKFLMERN 290 (580)
Q Consensus 253 ~~~~~-~~lg~~~~~al~ig~~l-s~TS~~Vv~~iL~e~~ 290 (580)
+++++ |++..++ ....|.+. ++|++|.. ....|..
T Consensus 475 ~~llg~~v~kmn~--~~l~G~laGs~T~ppaL-a~and~~ 511 (544)
T COG2985 475 VFLLGRYVLKMNW--LLLCGALAGSMTDPPAL-AFANDAA 511 (544)
T ss_pred HHHHHHHHHhccH--HHHhhHHhcCCCChHHH-HHHhhcc
Confidence 77766 4555554 34455544 66887765 4445543
No 124
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=38.87 E-value=4.2e+02 Score=26.63 Aligned_cols=90 Identities=9% Similarity=0.068 Sum_probs=62.0
Q ss_pred hHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 047751 440 HVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTT 519 (580)
Q Consensus 440 d~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~v 519 (580)
+.+.+.++|..++..+.+..+.-+..++..++.+|.+.. .. .++.+|+...-+-..+..+.|-...-.-...+.+-
T Consensus 79 ~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~--i~--~Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitG 154 (226)
T TIGR00659 79 QLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPE--II--ASLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTG 154 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 345566666666666666666677888888999998733 22 35799999888888888888775543333344455
Q ss_pred HHHHHHHHHHHHhh
Q 047751 520 ALSLVTTPLLFKLI 533 (580)
Q Consensus 520 llS~l~~Pll~~l~ 533 (580)
++..+++|.+.|+.
T Consensus 155 i~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 155 LLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHHHHc
Confidence 66777788877765
No 125
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=37.53 E-value=2.2e+02 Score=31.36 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHhHh
Q 047751 423 IRNFFAALFLASIGMLIHVHFLW 445 (580)
Q Consensus 423 i~~~f~plFFv~iGl~id~~~l~ 445 (580)
++|-++.+||..+|+.+.-+.+.
T Consensus 67 INDgLMaiFFf~VGLEIKrE~l~ 89 (423)
T PRK14855 67 VNDGLMAVFFLLVGLEIKRELLI 89 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 46899999999999999977663
No 126
>PRK01821 hypothetical protein; Provisional
Probab=37.10 E-value=3.3e+02 Score=24.97 Aligned_cols=42 Identities=14% Similarity=0.313 Sum_probs=22.5
Q ss_pred HhHHhHHHHH---HHHHH--HHHhhhhhHHhHhHHHHHHHHHHHHHH
Q 047751 418 EQVEPIRNFF---AALFL--ASIGMLIHVHFLWNHVDILLAAVLLVI 459 (580)
Q Consensus 418 ~~l~~i~~~f---~plFF--v~iGl~id~~~l~~~~~~~l~~vl~~~ 459 (580)
+.+++-.+++ +|+|| +.+|..-..+.+.+++..+++.+++..
T Consensus 58 ~~v~~~a~~LL~~m~LfFVPa~VGim~~~~ll~~~~~~il~~ivvST 104 (133)
T PRK01821 58 KWVKPGCSLLIRYMALLFVPIGVGVMQYYDLLRAQFGPIVVSCIVST 104 (133)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554433 56677 455665556666666655444444333
No 127
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=36.81 E-value=4.4e+02 Score=26.25 Aligned_cols=89 Identities=18% Similarity=0.151 Sum_probs=62.3
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 047751 441 VHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTA 520 (580)
Q Consensus 441 ~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~vl 520 (580)
.+.+..+|..++..+.+..+.-+..++..++.+|.+.. +..++.+|+...-+-..+..+.|-...-.-...+.+-+
T Consensus 70 ~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~----~~~Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi 145 (215)
T PF04172_consen 70 RRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE----IILSLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGI 145 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 45566677666666666777778888888999998753 33447899998888888888888765444444444556
Q ss_pred HHHHHHHHHHHhh
Q 047751 521 LSLVTTPLLFKLI 533 (580)
Q Consensus 521 lS~l~~Pll~~l~ 533 (580)
+..+++|.+.++.
T Consensus 146 ~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 146 LGAVLGPPLLKLL 158 (215)
T ss_pred HHHHhHHHHHhHc
Confidence 6677777777764
No 128
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=35.44 E-value=5.8e+02 Score=27.22 Aligned_cols=105 Identities=13% Similarity=0.102 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhhCcCC---CCCCCchHHHHHHHHHHH------HHHHHHHhhcCChhHHHHhhhHHHH
Q 047751 170 CGGIAFACAGQPVITGYLLAGSVIGPGG---FSFVSEMVQVETVAQFGV------IFLLFALGLEFSTAKLRVVRAVAIL 240 (580)
Q Consensus 170 l~~~l~~rl~lP~ivg~IlaGilLGPs~---Lg~i~~~~~le~la~lGl------i~llF~~GLeld~~~l~~~~~~av~ 240 (580)
+...-.+|---|.+.-.|-.|+++.+.- +|.+.+...++.+-++|+ .++.+-+|.-.|..-+-.+.+..+.
T Consensus 12 LiYLai~k~~EPlLLiPigfG~il~NiP~~~~g~~~~gg~l~~~~~~gi~~~l~P~LIFlGIGAmtDFgpllanP~~~ll 91 (354)
T TIGR01109 12 LLYLAIAKKFEPLLLIPIGFGGILSNIPEAGLGLTAEGGILALFYKVGIGSGIAPLLIFMGIGALTDFGPLLANPRTLLL 91 (354)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHhcCCccccccccCCchHHHHHHHHHhcchHHHHHHHhccHHhhhHHHHhChHHHHH
Confidence 3333344555788888888888887642 233232233443333333 3455668889999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHhh
Q 047751 241 GGLLQIFLFMCLCGIIASLCGG------KPSEGVFVGVLLSM 276 (580)
Q Consensus 241 ia~~~~ll~~~l~~~~~~~lg~------~~~~al~ig~~ls~ 276 (580)
.+..++-+.. ....+.++|+ +..++..+|++-..
T Consensus 92 GaaAQ~GiF~--t~~~A~~lGf~~~~~~~~~eAAsIgIIGgA 131 (354)
T TIGR01109 92 GAAAQFGIFA--TVFGALTLNFFGIISFSLPQAAAIGIIGGA 131 (354)
T ss_pred HHHHHhhHHH--HHHHHHHhCCCcccccChhhceeeeeeccC
Confidence 7777654432 2333445566 45666666555444
No 129
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=32.54 E-value=6.9e+02 Score=27.25 Aligned_cols=106 Identities=12% Similarity=0.114 Sum_probs=59.7
Q ss_pred HHHHHHHH-hcCCcHHHHH-HHHHHhhCcCCCCCCCch------HHHHHHHHHHHHHHHHHHhhc-CChhHHHHhhhHHH
Q 047751 169 TCGGIAFA-CAGQPVITGY-LLAGSVIGPGGFSFVSEM------VQVETVAQFGVIFLLFALGLE-FSTAKLRVVRAVAI 239 (580)
Q Consensus 169 ~l~~~l~~-rl~lP~ivg~-IlaGilLGPs~Lg~i~~~------~~le~la~lGli~llF~~GLe-ld~~~l~~~~~~av 239 (580)
+.++.++. .+++|.-+.+ |+.=.++-- .|.+++. ..-+.++.=-.--+|+-+|+- +|++++-+...-.-
T Consensus 277 f~~g~il~kf~~~P~~va~MIil~a~lk~--~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~ 354 (438)
T COG3493 277 FMAGGILGKFIGLPGPVAFMIILVAILKA--ANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQN 354 (438)
T ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhH
Confidence 34444554 4678966633 333333332 3444321 233444444445578899997 89999887655444
Q ss_pred HHHHHHHHHHHHHH-HHHHHhcCCChHHHHHHH-HHHhh
Q 047751 240 LGGLLQIFLFMCLC-GIIASLCGGKPSEGVFVG-VLLSM 276 (580)
Q Consensus 240 ~ia~~~~ll~~~l~-~~~~~~lg~~~~~al~ig-~~ls~ 276 (580)
.+-+.++++.+..+ ++.++++|..+.|+-..+ .|.+.
T Consensus 355 vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~ 393 (438)
T COG3493 355 VIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMAN 393 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcC
Confidence 44444445544444 456788998776654444 65543
No 130
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=32.07 E-value=3.2e+02 Score=27.63 Aligned_cols=130 Identities=22% Similarity=0.309 Sum_probs=69.5
Q ss_pred HHHHHHhhCcCCC----CCCCc--hHHHHHHHHHHHHHHHHHHhhcCCh--hHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 047751 186 YLLAGSVIGPGGF----SFVSE--MVQVETVAQFGVIFLLFALGLEFST--AKLRVVRAVAILGGLLQIFLFMCLCGIIA 257 (580)
Q Consensus 186 ~IlaGilLGPs~L----g~i~~--~~~le~la~lGli~llF~~GLeld~--~~l~~~~~~av~ia~~~~ll~~~l~~~~~ 257 (580)
-++.|++++|..+ .++++ ...-..+-.+++..++=-.|...-+ +++.+.+...+.--+ +-+.+.+++.-++
T Consensus 27 A~iig~~~~~~~~~~~~k~~~~~~~~~a~~~~~~~ll~l~ak~g~~vGp~i~~i~~aGpALilQE~-GnlGTillaLPiA 105 (241)
T PF11299_consen 27 ALIIGMALGPQKLKPLKKIISEKEMKFAGKLVGIALLPLIAKLGTTVGPNIPKILSAGPALILQEF-GNLGTILLALPIA 105 (241)
T ss_pred HHHHHHHhcchhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHhhHHHHHHHh-cchhhHHHHhHHH
Confidence 3567888888776 33433 2344555555555555555665543 355555553332222 2224444444455
Q ss_pred HhcCCChHHHHHHHHHHhhccHHHHHHHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 047751 258 SLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTIGTLILQDCAVGLLFALLPV 320 (580)
Q Consensus 258 ~~lg~~~~~al~ig~~ls~TS~~Vv~~iL~e~~~~~s~~g~l~ls~avl~Dv~~~lllal~~~ 320 (580)
.++|..-. .+|++.|..==|-+ .+..|+==.+++.||=.++.=++.-+++-++++++..
T Consensus 106 llLGlkRE---aIGat~SI~REp~l-aiI~ekYGldSpEgrGVl~~Yi~GTvfGtiffsllas 164 (241)
T PF11299_consen 106 LLLGLKRE---AIGATFSIGREPNL-AIISEKYGLDSPEGRGVLGVYIIGTVFGTIFFSLLAS 164 (241)
T ss_pred HHhcccHH---hhcceeecccCcce-eeeehhcCCCCccccceEEEeeehhhHHHHHHHHHHH
Confidence 66665421 45666665322222 1234443357888887777766666666666666543
No 131
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=31.93 E-value=42 Score=33.72 Aligned_cols=129 Identities=21% Similarity=0.170 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHhhCcCCC--CCCCchHHHHHHHHHHHHHHHHHHhhcCChhHH
Q 047751 160 DLVVVIVSATCGGIAFACAGQPV------ITGYLLAGSVIGPGGF--SFVSEMVQVETVAQFGVIFLLFALGLEFSTAKL 231 (580)
Q Consensus 160 ~l~lil~~a~l~~~l~~rl~lP~------ivg~IlaGilLGPs~L--g~i~~~~~le~la~lGli~llF~~GLeld~~~l 231 (580)
-+.++...+...+.+.+..+.|. ..|++++|.++=.... +.+....+..-+..+....+.-..|++++.+..
T Consensus 101 ~~iV~~~lA~~g~~lle~A~~P~~i~l~~aigel~a~fLiiNI~~~~~~~~~~iv~s~l~t~a~~I~~ik~gLgt~~r~~ 180 (252)
T KOG3826|consen 101 GLIVIWGLATDGGFLLELARVPVTIGLPTAIGELLAGFLIINISFVNGAVCAPIVVSPLRTVALTIIKIKAGLGTLPRAP 180 (252)
T ss_pred eeehhhhHhhchHhhHhhccccccccccchHHHHHHHHHheecchhhhceeeeeeehhhhhccchHHHHHhhhcccccch
Confidence 34555667777788887766665 8999999976643321 111222345556677788888899999999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHhhccHHHHHHHHhh
Q 047751 232 RVVRAVAILGGLLQIFLFMCLCGIIAS-LCGGKPSEGVFVGVLLSMSSTAVVLKFLME 288 (580)
Q Consensus 232 ~~~~~~av~ia~~~~ll~~~l~~~~~~-~lg~~~~~al~ig~~ls~TS~~Vv~~iL~e 288 (580)
+++.......++.......-....... .+..++.+++..|.+...-+.....+-...
T Consensus 181 ~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l~~~ii~~~l~g~v~~~i~~~~~r~~~~h 238 (252)
T KOG3826|consen 181 ENVLAVCCVLMVLPSIIEASAPAVTSHFLLAGPIIWAFLLGIVIGSILWRFPRPDYQH 238 (252)
T ss_pred hhhhHHHhhhhhhhhhhccccHHHHHHHHhccchHHHhccccceeeeecCCccccchh
Confidence 888765555433332222222223333 345677888888887776665555444433
No 132
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=31.28 E-value=3e+02 Score=30.46 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHhHh
Q 047751 423 IRNFFAALFLASIGMLIHVHFLW 445 (580)
Q Consensus 423 i~~~f~plFFv~iGl~id~~~l~ 445 (580)
++|.++.+||..+|+.+.-+.+.
T Consensus 72 INDgLMaiFFf~VGLEIKrE~~~ 94 (438)
T PRK14856 72 IDDVLMALFFLMIGLEIKRELLF 94 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999977654
No 133
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=30.40 E-value=1e+03 Score=29.27 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhh
Q 047751 234 VRAVAILGGLLQIFLFMCLCGIIASLCGGKPSEGVFVGVLLSM 276 (580)
Q Consensus 234 ~~~~av~ia~~~~ll~~~l~~~~~~~lg~~~~~al~ig~~ls~ 276 (580)
.+|.++.. .+++.++++.+.++.+++|.+...--+.|.+++.
T Consensus 354 ~~r~~liv-~~~IPisi~~t~~~m~~~g~slN~~SL~gl~lai 395 (1021)
T PF00873_consen 354 NWRSALIV-ALSIPISILGTFIFMYLFGISLNIMSLAGLILAI 395 (1021)
T ss_dssp SHHHHHHH-HHHHHHHHHHHHHHHHHTTTTBEHHHHHHHHHHH
T ss_pred chHHHHHH-HHHHHHHHHHHHHHHHHcCCCchHHHHHhHHHhc
Confidence 34544443 3445566666667788999987655555555544
No 134
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=28.08 E-value=6.4e+02 Score=25.43 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC----cHHHHHHHHHHhhCcCCCCC---CCchHHHHHHHHHHHHHHHHHHhhcCChhHH
Q 047751 159 SDLVVVIVSATCGGIAFACAGQ----PVITGYLLAGSVIGPGGFSF---VSEMVQVETVAQFGVIFLLFALGLEFSTAKL 231 (580)
Q Consensus 159 ~~l~lil~~a~l~~~l~~rl~l----P~ivg~IlaGilLGPs~Lg~---i~~~~~le~la~lGli~llF~~GLeld~~~l 231 (580)
+.+.+-++.=.+..++.+|.|- |-+++-++...++-...... ....+.++.+-+ =.-..|..=+=-..+.+
T Consensus 9 f~l~lTl~~y~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~~~i~Y~~Y~~g~~~i~~lLg--PAtVAlAvPLYkq~~~i 86 (230)
T COG1346 9 FGLLLTLLAYFAAKRLYKRTKSPFLNPLLVATVLLIAFLLLFGISYEDYMKGGQWINFLLG--PATVALAVPLYKQRHLI 86 (230)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHcCCCHHHHhcccHHHHHHHH--HHHHHHhhHHHHHHHHH
Confidence 3344444444555667788774 44444444333332211110 112334444422 23334444554578889
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 047751 232 RVVRAVAILGGLLQIFLFMCLCGIIASLCGGKP 264 (580)
Q Consensus 232 ~~~~~~av~ia~~~~ll~~~l~~~~~~~lg~~~ 264 (580)
||+|+..+...+.+.+..+..+..++.++|.+.
T Consensus 87 k~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~ 119 (230)
T COG1346 87 KRHWKPILAGVLVGSVVAIISGVLLAKLFGLSP 119 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 999999988888888877777777888888764
No 135
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=27.85 E-value=4.4e+02 Score=28.67 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHhHh
Q 047751 423 IRNFFAALFLASIGMLIHVHFLW 445 (580)
Q Consensus 423 i~~~f~plFFv~iGl~id~~~l~ 445 (580)
++|.++.+||..+|+.+.-+.+.
T Consensus 63 iNDgLMaiFFf~vGLEiKrE~~~ 85 (388)
T PRK09561 63 INDGLMAVFFLLIGLEVKRELLE 85 (388)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHc
Confidence 46899999999999999977663
No 136
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=27.66 E-value=1.5e+02 Score=32.07 Aligned_cols=126 Identities=10% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCChHHHHHHHHHHHhHHHHHHHHH
Q 047751 424 RNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKG-----FRYSNKTSLLVGMSLAQIGEFAFVLL 498 (580)
Q Consensus 424 ~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~-----~~~~~r~a~~lgl~L~~rG~~~lvla 498 (580)
.+++-|+-|.-+|..+|+..+..++ ..+.+-..+=++-+.....+..+ .|++.+|+-.+|..=+.-|-.++.+.
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLlanP-~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvs 211 (433)
T PRK15477 133 SGVAPLVIFMGVGAMTDFGPLLANP-RTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLS 211 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhhCH-HHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhH
Q ss_pred HHHHhC--CCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCccc
Q 047751 499 SRASNL--HLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVNLGVLLRWFSPDSPIEI 554 (580)
Q Consensus 499 ~~a~~~--gii~~~~~~~lv~~vllS~l~~Pll~~l~p~~~~~~~~~~~~~~~~~~~~ 554 (580)
+.-... |.+.-.-|+-|-++=+ +-|.+.|+...++.++..+...++-+..|.
T Consensus 212 skLAP~Llg~IaVAAYSYMaLVPi----IQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15477 212 GKLAPELLGAIAVAAYSYMALVPL----IQPPIMKALTTEKERKIRMVQLRTVSKREK 265 (433)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHhc----ccchHHHhccCHHHhCccCCCCCCCCccch
No 137
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=27.62 E-value=1.5e+02 Score=32.06 Aligned_cols=126 Identities=10% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCChHHHHHHHHHHHhHHHHHHHHH
Q 047751 424 RNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKG-----FRYSNKTSLLVGMSLAQIGEFAFVLL 498 (580)
Q Consensus 424 ~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~-----~~~~~r~a~~lgl~L~~rG~~~lvla 498 (580)
.+++-|+-|.-+|..+|+..+..++ ..+.+-..+=++-+.....+..+ .|++.+|+-.+|..=+.-|-.++.+.
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLlanP-~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvs 211 (433)
T PRK15476 133 SGVAPLVIFMGVGAMTDFGPLLANP-RTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLS 211 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhhCH-HHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhH
Q ss_pred HHHHhC--CCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCccc
Q 047751 499 SRASNL--HLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVNLGVLLRWFSPDSPIEI 554 (580)
Q Consensus 499 ~~a~~~--gii~~~~~~~lv~~vllS~l~~Pll~~l~p~~~~~~~~~~~~~~~~~~~~ 554 (580)
+.-... |.+.-.-|+-|-++=+ +-|.+.|+...++.++..+...++-+..|.
T Consensus 212 skLAP~Llg~IaVAAYSYMaLVPi----IQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15476 212 GKLAPELLGAIAVAAYSYMALVPL----IQPPIMKALTTEKERKIRMVQLRTVSKREK 265 (433)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHhc----ccchHHHhccCHHHhCccCCCCCCCCccch
No 138
>PRK10263 DNA translocase FtsK; Provisional
Probab=27.54 E-value=1.1e+03 Score=29.92 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=18.1
Q ss_pred CchHHHHHHHHHHHhcCCCchhhHHHhHHhHHHHHHHHHHHHHhhhh
Q 047751 393 GLSLELGSFAAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLI 439 (580)
Q Consensus 393 Gls~~lGaFvaGl~l~~~~~~~~l~~~l~~i~~~f~plFFv~iGl~i 439 (580)
+.-+.+|++++.+++.- -.+..+++|+++++.+..+
T Consensus 62 Nl~GiVGA~LAD~L~~L-----------FGl~AYLLP~LL~~~a~~l 97 (1355)
T PRK10263 62 NLGGMPGAWLADTLFFI-----------FGVMAYTIPVIIVGGCWFA 97 (1355)
T ss_pred cccchHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHH
Confidence 34456666666555421 1133456666555555443
No 139
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=27.48 E-value=4.2e+02 Score=28.87 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHhHh
Q 047751 423 IRNFFAALFLASIGMLIHVHFLW 445 (580)
Q Consensus 423 i~~~f~plFFv~iGl~id~~~l~ 445 (580)
++|.++.+||..+|+.+.-+.+.
T Consensus 63 iNDgLMaiFFf~vGLEiKrE~~~ 85 (389)
T PRK09560 63 INDGLMAVFFLLVGLEIKRELLE 85 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999977653
No 140
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=27.36 E-value=1.5e+02 Score=31.98 Aligned_cols=126 Identities=10% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCChHHHHHHHHHHHhHHHHHHHHH
Q 047751 424 RNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKG-----FRYSNKTSLLVGMSLAQIGEFAFVLL 498 (580)
Q Consensus 424 ~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~-----~~~~~r~a~~lgl~L~~rG~~~lvla 498 (580)
.+++-|+-|.-+|..+|+..+..++ ..+.+-..+=++-+.....+..+ .|++.+|+-.+|..=+.-|-.++.+.
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLlanP-~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvs 211 (433)
T PRK15475 133 SGVAPLVIFMGVGAMTDFGPLLANP-RTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLS 211 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhhCH-HHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhH
Q ss_pred HHHHhC--CCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCccc
Q 047751 499 SRASNL--HLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVNLGVLLRWFSPDSPIEI 554 (580)
Q Consensus 499 ~~a~~~--gii~~~~~~~lv~~vllS~l~~Pll~~l~p~~~~~~~~~~~~~~~~~~~~ 554 (580)
+.-... |.+.-.-|+-|-++=+ +-|.+.|+...++.++..+...++-+..|.
T Consensus 212 skLAP~Llg~IaVAAYSYMaLVPi----IQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15475 212 GKLAPELLGAIAVAAYSYMALVPL----IQPPIMKALTTETERKIRMVQLRTVSKREK 265 (433)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHhc----ccchHHHhccCHHHhCccCCCCCCCCccch
No 141
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=25.33 E-value=2.6e+02 Score=29.54 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=48.8
Q ss_pred HHHHHHHHhhCcCCCCCCCc-hHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 047751 184 TGYLLAGSVIGPGGFSFVSE-MVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLCGIIASL 259 (580)
Q Consensus 184 vg~IlaGilLGPs~Lg~i~~-~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~~ll~~~l~~~~~~~ 259 (580)
+-.++.|+++|+. .++ .+.+..-...-+.|+-|..|-.+|+..+.+.+-.-+.+++..++++.........+
T Consensus 175 llP~iiG~iLGNL----D~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~~dr~ 247 (314)
T PF03812_consen 175 LLPIIIGMILGNL----DPDFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLYLADRL 247 (314)
T ss_pred HHHHHHHHHHhcC----CHHHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHH
Confidence 3456889999963 111 22344444566778899999999999999998888888777665554444444444
No 142
>PRK09371 gas vesicle synthesis protein GvpA; Provisional
Probab=25.09 E-value=46 Score=26.70 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=14.2
Q ss_pred CCcccHHHHHHHHHHhhc
Q 047751 50 SKEDSFADMIDRALEKEF 67 (580)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~ 67 (580)
++..++||.+||.|+|--
T Consensus 4 ~~s~sLadvldriLDKGi 21 (68)
T PRK09371 4 PDSSSLAEVIDRILDKGI 21 (68)
T ss_pred CCcccHHHHHHHHccCCe
Confidence 345699999999998744
No 143
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=24.56 E-value=8.3e+02 Score=25.89 Aligned_cols=107 Identities=20% Similarity=0.202 Sum_probs=61.9
Q ss_pred HHhHHHHHHHHHHHHHhhhhhHHhHh---HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH---HhHHHH
Q 047751 420 VEPIRNFFAALFLASIGMLIHVHFLW---NHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSLLVGMSL---AQIGEF 493 (580)
Q Consensus 420 l~~i~~~f~plFFv~iGl~id~~~l~---~~~~~~l~~vl~~~~~K~l~~~l~~~~~~~~~r~a~~lgl~L---~~rG~~ 493 (580)
+++....+..+.|...|+.+..+.+. .+|...+..++.-++.=++.++..++.+..|. .+.+|+.+ .|-|..
T Consensus 36 ~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~--~l~~Gl~ll~~~Pggv~ 113 (319)
T COG0385 36 LGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPP--ELAVGLLLLGCCPGGVA 113 (319)
T ss_pred hhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCH--HHHHhHHheeeCCCchh
Confidence 34444566666777888888877664 44545555555556666777888888777554 34455443 455666
Q ss_pred HHHHHHHHHhCCCChHHHHHHHH--HHHHHHHHHHHHHHHhh
Q 047751 494 AFVLLSRASNLHLVEGKLYLLLL--GTTALSLVTTPLLFKLI 533 (580)
Q Consensus 494 ~lvla~~a~~~gii~~~~~~~lv--~~vllS~l~~Pll~~l~ 533 (580)
+.++...+. | +--+++.. ...+++.+++|++..++
T Consensus 114 S~~~t~lAk--G---nValsV~~tsvStll~~f~tPllv~l~ 150 (319)
T COG0385 114 SNAMTYLAK--G---NVALSVCSTSVSTLLGPFLTPLLVGLL 150 (319)
T ss_pred HHHHHHHhc--C---cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655554443 2 11222222 24556667777777664
No 144
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=24.42 E-value=8.7e+02 Score=25.77 Aligned_cols=117 Identities=16% Similarity=0.155 Sum_probs=66.5
Q ss_pred HHHHHhcCCCchhhHHHhHHhHHHHHHHHHHHHHhhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHH
Q 047751 402 AAGVMISTTDLAQHTLEQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVLLVIVVKTVVVATVIKGFRYSNKTSL 481 (580)
Q Consensus 402 vaGl~l~~~~~~~~l~~~l~~i~~~f~plFFv~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l~~~l~~~~~~~~~r~a~ 481 (580)
+.|+++.-.|+++ ....+.+..+.+=.|++.++..-|++.+...+.+ ++..+...+...+..+...+.++.+..+-.
T Consensus 255 i~gLi~aLtPf~~--lpgs~elgtv~lY~~v~vias~Ad~~~i~taP~~-i~~gf~il~~h~~v~f~~~KlF~~dL~~i~ 331 (384)
T COG5505 255 ITGLIIALTPFER--LPGSQELGTVLLYLFVVVIASPADLRLIVTAPLI-ILFGFIILISHLAVSFAAGKLFRVDLEEIL 331 (384)
T ss_pred HHHHHHHhCcccc--CCchhhhhHHHHHHHHHHhccchhHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3455554444321 1233455567777789999999999888764433 333344556677788888899988876644
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Q 047751 482 LVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTP 527 (580)
Q Consensus 482 ~lgl~L~~rG~~~lvla~~a~~~gii~~~~~~~lv~~vllS~l~~P 527 (580)
..++ -+.-|-.+--....+.++ +.....+++-++...++.
T Consensus 332 ~Asl-AniGG~~sAp~~A~A~nr-----~lv~~gvlmg~lG~~iGn 371 (384)
T COG5505 332 LASL-ANIGGPTSAPAMAIAKNR-----ELVAPGVLMGTLGYLIGN 371 (384)
T ss_pred HHHH-hccCCccchhHHHhhcCc-----hhcchHHHHHHHHHHHHh
Confidence 4333 244444554454555543 333344444444444433
No 145
>PRK01658 holin-like protein; Validated
Probab=23.03 E-value=5.6e+02 Score=23.07 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=24.0
Q ss_pred HhHHhHHHHH---HHHHHH--HHhhhhhHHhHhHHHHHHHHHHHHHHHHHHH
Q 047751 418 EQVEPIRNFF---AALFLA--SIGMLIHVHFLWNHVDILLAAVLLVIVVKTV 464 (580)
Q Consensus 418 ~~l~~i~~~f---~plFFv--~iGl~id~~~l~~~~~~~l~~vl~~~~~K~l 464 (580)
+.+++-.+++ +++||+ .+|..-..+.+..++..++..+++..+.-++
T Consensus 53 ~~v~~~a~~Ll~~m~llFVPa~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~ 104 (122)
T PRK01658 53 KWIELGAETLLAELPLFFIPSAVGVMNYGDFLSSKGISLFLVVVISTFVVMI 104 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554433 566774 5555555666666655444444443333333
No 146
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=21.97 E-value=6.6e+02 Score=27.22 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHhHh
Q 047751 423 IRNFFAALFLASIGMLIHVHFLW 445 (580)
Q Consensus 423 i~~~f~plFFv~iGl~id~~~l~ 445 (580)
++|.++.+||..+|+.+.-+.+.
T Consensus 56 iNDgLMaiFFf~vGlEiKrE~~~ 78 (373)
T TIGR00773 56 INDGLMAVFFLLIGLEVKRELLE 78 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999977653
No 147
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=20.50 E-value=9.9e+02 Score=24.96 Aligned_cols=105 Identities=14% Similarity=0.216 Sum_probs=55.1
Q ss_pred HHHHhcCCcHHHHHHHHHHhhCcCCC-------CCCCc--hHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHH
Q 047751 173 IAFACAGQPVITGYLLAGSVIGPGGF-------SFVSE--MVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAILGGL 243 (580)
Q Consensus 173 ~l~~rl~lP~ivg~IlaGilLGPs~L-------g~i~~--~~~le~la~lGli~llF~~GLeld~~~l~~~~~~av~ia~ 243 (580)
.+...+|+|+++.-+++|..+|-++. |.+-+ .--++.-+.+|..+.++.. ..... ......++
T Consensus 36 ~ii~~~RlPR~l~a~l~G~~La~sG~~lQ~~~rNpLA~P~iLGissgA~lg~~~~~~~~----~~~~~----~~~~~~a~ 107 (311)
T PF01032_consen 36 FIIWDLRLPRILAAILVGAALALSGALLQTLTRNPLADPSILGISSGASLGAVLAILLF----PSLSF----YGLPLFAF 107 (311)
T ss_dssp HHHCCTCHHHHHHHHHHHHHHHHHHHHHHHHTT-TT--TTTTTHHHHHHHHHHHHHHCC----TTS-H----HHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCccccccchHhHHHHHHHHHHHHHh----hhhhh----hhHHHHHH
Confidence 45667899999999999999985542 11111 1236677777777766654 10111 11122233
Q ss_pred HHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHhhccHHHHHHH
Q 047751 244 LQIFLFMCLCGIIA-SLCGGKPSEGVFVGVLLSMSSTAVVLKF 285 (580)
Q Consensus 244 ~~~ll~~~l~~~~~-~~lg~~~~~al~ig~~ls~TS~~Vv~~i 285 (580)
.+.++...+...++ .-.+.+...-++.|.+++....++..-+
T Consensus 108 iGal~~~~lv~~l~~~~~~~~~~~liL~Gi~i~~~~~al~~~l 150 (311)
T PF01032_consen 108 IGALLALLLVYLLSKRRGGFSPLRLILAGIAISALFSALTSFL 150 (311)
T ss_dssp HHHHHHHHHHHHCHT-TTT--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 33222222222222 2224456667788888877655554443
No 148
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=20.42 E-value=2.5e+02 Score=26.16 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 047751 337 SLVTLITFLAILTILSRTCVPWCLKLMISLS 367 (580)
Q Consensus 337 ~ll~~v~filv~~~v~r~~~~~l~~~~~~~~ 367 (580)
+++.++.|+++.+++.+++.+++.+.+..+.
T Consensus 25 ~~~~~inFliL~~lL~k~l~~Pi~~~l~~R~ 55 (156)
T CHL00118 25 LPLMALQFLLLMVLLNIILYKPLLKVLDERK 55 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888888888888888888776653
Done!