Query 047751
Match_columns 580
No_of_seqs 232 out of 1642
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 04:13:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047751.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047751hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vv5a3 f.34.1.1 (A:27-112) Me 18.3 1.6E+02 0.012 21.1 7.1 20 346-365 13-32 (86)
2 d1l7va_ f.22.1.1 (A:) ABC tran 9.0 6.1E+02 0.044 22.7 13.2 48 175-222 52-108 (324)
3 d1ecib_ a.33.1.1 (B:) Ectatomi 5.7 85 0.0062 18.5 0.7 15 48-62 17-31 (34)
4 d1wxma1 d.15.1.5 (A:8-80) A-Ra 4.9 1.5E+02 0.011 21.3 1.9 18 48-66 17-34 (73)
5 d1c1yb_ d.15.1.5 (B:) c-Raf1 R 4.6 2E+02 0.014 20.8 2.3 18 48-66 18-35 (77)
6 d2nwwa1 f.49.1.1 (A:12-416) Pr 4.5 8.6E+02 0.062 22.1 8.1 88 211-300 194-291 (405)
7 d1rlma_ c.108.1.10 (A:) Sugar 4.2 2E+02 0.015 24.3 2.7 21 48-68 247-267 (269)
8 d2hiya1 d.356.1.1 (A:1-180) Hy 4.1 1.3E+02 0.0092 25.4 1.0 28 40-68 42-69 (180)
9 d2eiaa1 a.28.3.1 (A:148-222) E 3.0 3.1E+02 0.023 19.3 2.2 20 49-69 9-31 (75)
10 d1a8oa_ a.28.3.1 (A:) HIV caps 3.0 3.2E+02 0.023 19.0 2.2 14 49-63 6-19 (70)
No 1
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=18.33 E-value=1.6e+02 Score=21.08 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=9.8
Q ss_pred HHHHHHHHhHHHHHHHHHHh
Q 047751 346 AILTILSRTCVPWCLKLMIS 365 (580)
Q Consensus 346 lv~~~v~r~~~~~l~~~~~~ 365 (580)
.+.+++.|++.+.+.|.+++
T Consensus 13 ~i~~~i~~~i~~~~~~~~~~ 32 (86)
T d2vv5a3 13 IVGLIIARMISNAVNRLMIS 32 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455566554444444443
No 2
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=9.02 E-value=6.1e+02 Score=22.72 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=30.2
Q ss_pred HHhcCCcHHHHHHHHHHhhCcCCC-------CCCCch--HHHHHHHHHHHHHHHHHH
Q 047751 175 FACAGQPVITGYLLAGSVIGPGGF-------SFVSEM--VQVETVAQFGVIFLLFAL 222 (580)
Q Consensus 175 ~~rl~lP~ivg~IlaGilLGPs~L-------g~i~~~--~~le~la~lGli~llF~~ 222 (580)
...+|+|+++.-+++|..+|-++. |.+-++ --+..-+.+|.+...+..
T Consensus 52 i~~iRlPR~l~a~l~Ga~La~sG~~lQ~~~rNpLA~P~ilGissGA~l~~v~~~~~~ 108 (324)
T d1l7va_ 52 VWQIRLPRTLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLIAAVLLG 108 (324)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTTTTTHHHHHHHHHHHHHHTS
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchHHHhhhHHHHHHHHHHHhc
Confidence 355799999999999999985542 111111 124555667766655543
No 3
>d1ecib_ a.33.1.1 (B:) Ectatomin subunit B, EB {Ant (Ectatomma tuberculatum), venom [TaxId: 39300]}
Probab=5.72 E-value=85 Score=18.54 Aligned_cols=15 Identities=33% Similarity=0.384 Sum_probs=11.2
Q ss_pred CCCCcccHHHHHHHH
Q 047751 48 TGSKEDSFADMIDRA 62 (580)
Q Consensus 48 ~~~~~~~~~~~~~~~ 62 (580)
.+.-|+|||.|+.+-
T Consensus 17 akkcegsiatmikkk 31 (34)
T d1ecib_ 17 AKKCEGSIATMIKKK 31 (34)
T ss_dssp HTTBSTTHHHHHHHH
T ss_pred HHHccchHHHHHHHh
Confidence 345688999998764
No 4
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.88 E-value=1.5e+02 Score=21.26 Aligned_cols=18 Identities=28% Similarity=0.304 Sum_probs=14.8
Q ss_pred CCCCcccHHHHHHHHHHhh
Q 047751 48 TGSKEDSFADMIDRALEKE 66 (580)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~ 66 (580)
..+++ |+.|++.+++||.
T Consensus 17 vrpG~-tir~~L~k~l~kR 34 (73)
T d1wxma1 17 VRDGM-SVYDSLDKALKVR 34 (73)
T ss_dssp CCSSC-BSHHHHHHHHHTT
T ss_pred ecCCC-CHHHHHHHHHHHc
Confidence 45565 9999999999984
No 5
>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.55 E-value=2e+02 Score=20.82 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=14.8
Q ss_pred CCCCcccHHHHHHHHHHhh
Q 047751 48 TGSKEDSFADMIDRALEKE 66 (580)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~ 66 (580)
..+++ |+.|++.+++||.
T Consensus 18 vrpG~-tird~L~k~l~kR 35 (77)
T d1c1yb_ 18 VRNGM-SLHDCLMKALKVR 35 (77)
T ss_dssp CCTTC-BHHHHHHHHHHTT
T ss_pred ecCCC-CHHHHHHHHHHHc
Confidence 45565 9999999999984
No 6
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.47 E-value=8.6e+02 Score=22.06 Aligned_cols=88 Identities=17% Similarity=0.119 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHhcCCCh-------HHHHH--HHHHHhhccHH
Q 047751 211 AQFGVIFLLFALGLEFSTAKLRVVRAVAILGGLLQIFLFMCLC-GIIASLCGGKP-------SEGVF--VGVLLSMSSTA 280 (580)
Q Consensus 211 a~lGli~llF~~GLeld~~~l~~~~~~av~ia~~~~ll~~~l~-~~~~~~lg~~~-------~~al~--ig~~ls~TS~~ 280 (580)
+=+|+..++...-.+.+.+.+...++-.... .....+-.+.. .......+.++ .++.. ++..-|....|
T Consensus 194 aPigvf~l~a~~~~~~g~~~l~~l~~~~~~~-~~~~~l~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~Af~T~SS~atlP 272 (405)
T d2nwwa1 194 APIGVFALIAYVMAEQGVHVVGELAKVTAAV-YVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLP 272 (405)
T ss_dssp HHHHHHHHHHHHHHHTGGGCCTHHHHHHHHH-HHHHHHHHHHTHHHHHHTTTCCHHHHHHHHHHHHHHHHHHCCTGGGHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCChHHHhhhccchhheeeeccccccccH
Confidence 4456666666555555666555544432222 12222211111 22233445543 23333 33333334458
Q ss_pred HHHHHHhhhcccCcchHHHH
Q 047751 281 VVLKFLMERNSISALHGQVT 300 (580)
Q Consensus 281 Vv~~iL~e~~~~~s~~g~l~ 300 (580)
+..+..++.+. +.+..+..
T Consensus 273 ~~~~~~~~~gv-~~~i~~fv 291 (405)
T d2nwwa1 273 VTMRVAKEMGI-SEGIYSFT 291 (405)
T ss_dssp HHHHHHHTTTC-CTTTHHHH
T ss_pred HHHHHHHHcCC-Ccccccee
Confidence 88888776664 55554444
No 7
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}
Probab=4.17 E-value=2e+02 Score=24.32 Aligned_cols=21 Identities=10% Similarity=0.344 Sum_probs=17.2
Q ss_pred CCCCcccHHHHHHHHHHhhcc
Q 047751 48 TGSKEDSFADMIDRALEKEFN 68 (580)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~ 68 (580)
+...|+.+|+.+++.|++|++
T Consensus 247 ~~~~~~Gva~~i~~~l~~~~~ 267 (269)
T d1rlma_ 247 DDNNHEGALNVIQAVLDNTYP 267 (269)
T ss_dssp CCGGGTHHHHHHHHHHHTCTT
T ss_pred CCCCccHHHHHHHHHHhcCCC
Confidence 345666799999999999985
No 8
>d2hiya1 d.356.1.1 (A:1-180) Hypothetical protein SP0830 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=4.08 E-value=1.3e+02 Score=25.44 Aligned_cols=28 Identities=7% Similarity=0.186 Sum_probs=22.1
Q ss_pred cccccccCCCCCcccHHHHHHHHHHhhcc
Q 047751 40 ATTTELNNTGSKEDSFADMIDRALEKEFN 68 (580)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (580)
+||++..++.+. +.+++.+.++++++|.
T Consensus 42 SGNvvF~s~~~~-~~l~~~ie~~i~~~fG 69 (180)
T d2hiya1 42 SGNIFFTSIDSK-AQLVEKLETFFAVHYP 69 (180)
T ss_dssp TTEEEEEECSCH-HHHHHHHHHHHHHHCT
T ss_pred cCcEEEecCCCH-HHHHHHHHHHHHHHcC
Confidence 577777766544 4799999999999995
No 9
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=2.98 E-value=3.1e+02 Score=19.35 Aligned_cols=20 Identities=35% Similarity=0.672 Sum_probs=13.0
Q ss_pred CCCcccHHHHHHHHH---Hhhccc
Q 047751 49 GSKEDSFADMIDRAL---EKEFNE 69 (580)
Q Consensus 49 ~~~~~~~~~~~~~~~---~~~~~~ 69 (580)
+++| ++.|.+||.+ |+|...
T Consensus 9 GpkE-pf~dfVdRl~~a~~~~~~~ 31 (75)
T d2eiaa1 9 GAKE-PYPEFVDRLLSQIKSEGHP 31 (75)
T ss_dssp CTTC-CHHHHHHHHHHHHHHTTCC
T ss_pred CCCC-CHHHHHHHHHHHHHhhcCc
Confidence 4555 8999988865 445443
No 10
>d1a8oa_ a.28.3.1 (A:) HIV capsid protein, dimerisation domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=2.96 E-value=3.2e+02 Score=18.97 Aligned_cols=14 Identities=50% Similarity=0.840 Sum_probs=10.0
Q ss_pred CCCcccHHHHHHHHH
Q 047751 49 GSKEDSFADMIDRAL 63 (580)
Q Consensus 49 ~~~~~~~~~~~~~~~ 63 (580)
+++| ++.|++||.+
T Consensus 6 gpkE-pf~dfV~Rl~ 19 (70)
T d1a8oa_ 6 GPKE-PFRDYVDRFY 19 (70)
T ss_dssp CTTS-CHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHH
Confidence 4555 8899988854
Done!