BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047753
         (441 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3I75|B Chain B, Antibody Structure
          Length = 225

 Score = 32.7 bits (73), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 280 DDAGKILTRELKGRPVFEADDQSAMVYL---LITQRD-------KWGEKVYLESAYYLHG 329
           +  G    +  KGR    AD  S+  Y+    +T  D       +WG+K Y     Y   
Sbjct: 54  ETGGTAYNQNFKGRATLTADKSSSTAYMELRSLTSEDSAVYYCTRWGKKFYYYGTSYAMD 113

Query: 330 YWG 332
           YWG
Sbjct: 114 YWG 116


>pdb|1JN6|B Chain B, Crystal Structure Of Fab-Estradiol Complexes
 pdb|1JNH|B Chain B, Crystal Structure Of Fab-Estradiol Complexes
 pdb|1JNH|D Chain D, Crystal Structure Of Fab-Estradiol Complexes
 pdb|1JNH|F Chain F, Crystal Structure Of Fab-Estradiol Complexes
 pdb|1JNH|H Chain H, Crystal Structure Of Fab-Estradiol Complexes
          Length = 218

 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 287 TRELKGRPVFEADDQSAMVYLLITQRDKWGEKVYL----ESAYYLHGYWG 332
           T++ KG+    AD  S++VYL +         VY      S YY   YWG
Sbjct: 61  TQKFKGKATLTADRSSSIVYLQLNSLTSEDSAVYSCSRGRSLYYTMDYWG 110


>pdb|3NHM|A Chain A, Crystal Structure Of A Response Regulator From Myxococcus
           Xanthus
 pdb|3NHM|B Chain B, Crystal Structure Of A Response Regulator From Myxococcus
           Xanthus
          Length = 133

 Score = 30.4 bits (67), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 133 VLLVTGSSPK---PCENPVGDHYLLKSIKNKIDYCRIHGI 169
           V+ V+G +P+   P + PV D YL+K +K  +   ++H +
Sbjct: 80  VIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHAL 119


>pdb|2P6W|A Chain A, Crystal Structure Of A Glycosyltransferase Involved In The
           Glycosylation Of The Major Capsid Of Pbcv-1
 pdb|2P73|A Chain A, Crystal Structure Of A Glycosyltransferase Involved In The
           Glycosylation Of The Major Capsid Of Pbcv-1
 pdb|2P72|A Chain A, Crystal Structure Of A Glycosyltransferase Involved In The
           Glycosylation Of The Major Capsid Of Pbcv-1
 pdb|2P72|B Chain B, Crystal Structure Of A Glycosyltransferase Involved In The
           Glycosylation Of The Major Capsid Of Pbcv-1
          Length = 213

 Score = 28.5 bits (62), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 11/112 (9%)

Query: 138 GSSPKPCENPVGDHYLLKSIKNKI------DYCRIHGIEIFYNMALLDAEM--AGFWAKL 189
            S   PC   +  H+  ++I  +       +YC IHG   +Y  +        A  + + 
Sbjct: 1   ASMTTPCITILSGHFPKETIYARKTKELVEEYCSIHGYNFYYEESEPLETEEHALHFRRS 60

Query: 190 PLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERY---KDHNLVMHGWKE 238
            +I++     P  E+  W+DSD          P   +    D N++ H + E
Sbjct: 61  WIIQQAAEKFPSTEWFLWLDSDVYVNPKNKNKPITSFIDLSDPNILYHTFHE 112


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.140    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,437,510
Number of Sequences: 62578
Number of extensions: 659007
Number of successful extensions: 1358
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1357
Number of HSP's gapped (non-prelim): 6
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)