Query 047753
Match_columns 441
No_of_seqs 229 out of 431
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 02:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03182 xyloglucan 6-xylosylt 100.0 5E-139 1E-143 1058.8 30.9 415 1-432 1-428 (429)
2 PLN03181 glycosyltransferase; 100.0 2E-109 4E-114 842.9 27.6 301 108-411 97-445 (453)
3 KOG4748 Subunit of Golgi manno 100.0 3.3E-69 7.1E-74 543.3 11.3 333 18-402 1-364 (364)
4 PF05637 Glyco_transf_34: gala 100.0 2.8E-54 6E-59 417.1 4.1 211 130-367 2-236 (239)
5 PF03314 DUF273: Protein of un 99.4 1.4E-13 3.1E-18 131.4 6.3 121 161-310 2-127 (222)
6 KOG4748 Subunit of Golgi manno 99.1 3.8E-11 8.1E-16 122.8 3.0 101 243-348 214-315 (364)
7 PF03407 Nucleotid_trans: Nucl 98.4 7.4E-07 1.6E-11 83.6 8.8 172 161-364 16-203 (212)
8 PF01501 Glyco_transf_8: Glyco 97.0 0.00077 1.7E-08 62.9 4.8 111 182-309 78-203 (250)
9 cd06914 GT8_GNT1 GNT1 is a fun 96.8 0.047 1E-06 55.0 15.5 155 128-325 28-187 (278)
10 cd04194 GT8_A4GalT_like A4GalT 96.7 0.0068 1.5E-07 58.2 8.2 110 182-309 75-197 (248)
11 cd02537 GT8_Glycogenin Glycoge 96.6 0.0079 1.7E-07 58.3 8.3 82 200-311 88-170 (240)
12 PLN00176 galactinol synthase 95.9 0.097 2.1E-06 54.1 12.2 42 247-309 182-224 (333)
13 cd00505 Glyco_transf_8 Members 94.6 0.051 1.1E-06 52.5 5.1 108 184-311 77-200 (246)
14 cd06429 GT8_like_1 GT8_like_1 94.5 0.089 1.9E-06 52.3 6.6 153 182-379 93-253 (257)
15 PRK15171 lipopolysaccharide 1, 93.6 0.32 7E-06 50.0 8.7 103 162-264 75-194 (334)
16 cd06430 GT8_like_2 GT8_like_2 93.0 0.42 9.1E-06 49.0 8.4 152 162-324 54-224 (304)
17 cd06431 GT8_LARGE_C LARGE cata 92.2 0.31 6.7E-06 49.0 6.2 115 184-312 77-209 (280)
18 PLN02829 Probable galacturonos 91.3 0.84 1.8E-05 50.8 8.7 162 182-382 436-625 (639)
19 PLN02769 Probable galacturonos 89.5 2.6 5.6E-05 47.1 10.7 173 182-396 431-626 (629)
20 COG1442 RfaJ Lipopolysaccharid 86.5 2.9 6.2E-05 43.3 8.2 111 183-310 78-201 (325)
21 PLN02718 Probable galacturonos 84.0 4.1 9E-05 45.4 8.4 175 183-398 398-601 (603)
22 PLN02910 polygalacturonate 4-a 83.9 4.9 0.00011 45.0 8.9 169 187-398 459-655 (657)
23 PLN02742 Probable galacturonos 83.4 3.3 7.2E-05 45.5 7.3 162 183-381 333-520 (534)
24 PF03452 Anp1: Anp1; InterPro 77.6 1.3 2.7E-05 44.9 1.7 20 200-219 141-160 (269)
25 PLN02523 galacturonosyltransfe 70.4 15 0.00033 40.7 7.8 34 184-217 358-392 (559)
26 cd06432 GT8_HUGT1_C_like The C 62.8 15 0.00032 36.3 5.4 18 200-217 93-111 (248)
27 PLN02867 Probable galacturonos 56.3 44 0.00095 37.1 8.1 34 183-216 325-359 (535)
28 TIGR01606 holin_BlyA holin, Bl 50.1 7.1 0.00015 31.3 0.7 27 14-40 9-35 (63)
29 PF13704 Glyco_tranf_2_4: Glyc 43.1 33 0.00071 27.9 3.7 29 191-219 61-89 (97)
30 cd02520 Glucosylceramide_synth 40.8 1.5E+02 0.0032 27.0 8.0 34 184-219 70-103 (196)
31 cd04190 Chitin_synth_C C-termi 36.9 1E+02 0.0022 29.4 6.5 76 134-216 1-88 (244)
32 PF05102 Holin_BlyA: holin, Bl 35.8 16 0.00035 29.3 0.7 26 14-39 9-34 (61)
33 cd04191 Glucan_BSP_ModH Glucan 35.2 2.5E+02 0.0054 27.7 9.1 28 188-215 81-109 (254)
34 PF13712 Glyco_tranf_2_5: Glyc 34.9 54 0.0012 31.6 4.3 72 133-219 1-72 (217)
35 PF11201 DUF2982: Protein of u 34.8 70 0.0015 30.0 4.8 42 153-197 109-151 (152)
36 PF01539 HCV_env: Hepatitis C 30.9 16 0.00036 35.2 0.0 29 356-386 27-55 (190)
37 cd06435 CESA_NdvC_like NdvC_li 30.5 2.9E+02 0.0063 25.4 8.3 31 188-219 70-101 (236)
38 cd04192 GT_2_like_e Subfamily 30.1 1.5E+02 0.0032 26.8 6.1 34 184-219 66-99 (229)
39 PF13641 Glyco_tranf_2_3: Glyc 29.0 41 0.00088 30.9 2.3 34 184-219 70-103 (228)
40 cd06437 CESA_CaSu_A2 Cellulose 28.9 2.4E+02 0.0052 26.1 7.5 30 188-219 75-104 (232)
41 cd02515 Glyco_transf_6 Glycosy 28.8 2.7E+02 0.0059 28.5 8.2 78 130-217 33-139 (271)
42 PF13506 Glyco_transf_21: Glyc 28.4 61 0.0013 30.0 3.4 33 186-219 16-48 (175)
43 COG3085 Uncharacterized protei 27.1 17 0.00036 32.0 -0.6 37 379-415 19-57 (112)
44 cd04186 GT_2_like_c Subfamily 24.0 92 0.002 26.3 3.5 32 185-218 59-90 (166)
45 cd04860 AE_Prim_S AE_Prim_S: p 22.5 1E+02 0.0022 30.5 3.9 41 358-400 87-128 (232)
46 PLN03153 hypothetical protein; 21.8 75 0.0016 35.3 3.0 17 199-215 208-224 (537)
47 COG5540 RING-finger-containing 20.0 14 0.0003 38.4 -2.8 60 304-364 187-252 (374)
No 1
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=100.00 E-value=4.6e-139 Score=1058.77 Aligned_cols=415 Identities=72% Similarity=1.313 Sum_probs=393.7
Q ss_pred CccccccchHHHHHHHhhhcceehhhhhHHHHhhhhccccCCCCCCCCCchHHHHHHhhhhccccCccchhhhhhccccC
Q 047753 1 MLERCVGTLRARQIQRVIRHGKITLLCLFMTVIVLRGTIGAGKFGTPEQDIDDIRQHFYAHRKRVEPHRVLEEVQTTDAA 80 (441)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~t~~c~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (441)
+.+++++.+|+|++||++||+||||||||||||||||| |+|+||++++|+.++++++.+.+.+++++|+|+|++.+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~k~t~lc~~~tilvlrgt-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (429)
T PLN03182 1 MLQRCLGTPRGRQLQRTLNNLKITILCGFVTILVLRGT-IAGKFGTPEQDFVELRAHFLSARRIEEPSRVLAEIRFDDD- 78 (429)
T ss_pred CccccccchhhhhHHHHHhccchhhhhhhheeeEeccc-cccccCCCCcchhhhhhhhccccccccccccchhccccCc-
Confidence 46789999999999999999999999999999999999 9999999999999999999999999999999999884333
Q ss_pred CCCCCCCcccccccccccccCccCCCC--CC-CCCCc----------ccccCCCCCCCCCCCCCcEEEEEccCCCCCCCC
Q 047753 81 KTEDPNNYEKFDMNKLFVDEGEDEKRD--PN-KHDPS----------GSKRNPTLPNFLRPNKPRVLLVTGSSPKPCENP 147 (441)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~l~~~----------wl~~hp~~~~~~~~~~prIvIVT~sd~~~c~~~ 147 (441)
.. ..++.+++.++ .| +|||+ ||.+||+|+.+.. |+|+|+|||++++++|+|+
T Consensus 79 -~~-------------~~~~~~~~~~~~~~~y~lg~~i~~wd~~R~~wl~~~p~~~~~~~-g~prVviVT~sdp~~c~n~ 143 (429)
T PLN03182 79 -LT-------------DLDEVEEERWDPNTPYTLGPKISDWDEQRRRWLRKNPGFPSFVN-GKPRVLLVTGSQPKPCENP 143 (429)
T ss_pred -cc-------------cccccchhhcCCCCCcccCCCCCCHHHHHHHHHHhCCCCCCccC-CCCCEEEEeCCCCCcCCCc
Confidence 11 11233333333 66 99999 9999999998665 8899999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHhCCcEEEeccccCccccCccchHHHHHHHHhcCCCccEEEEEeCCcceeccCCCCCccccC
Q 047753 148 VGDHYLLKSIKNKIDYCRIHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYK 227 (441)
Q Consensus 148 ~gd~yl~ksikNk~dYAr~HGY~~~~n~~~ld~~~~~~WaKip~LR~aM~a~P~aEWvwWLDsDAlImN~~~~Lple~~~ 227 (441)
+|++||+++++||++||++|||+++|+++.++++++++|+|+|+||++|.+||++|||||||+||+||||+++||+++|+
T Consensus 144 ~gd~yLlks~kNK~dYAr~HGY~~fyn~~~ld~~~p~~WaKlpaLR~aM~~~PeaEWiWWLDsDALImNmsfelPlery~ 223 (429)
T PLN03182 144 VGDHYLLKSLKNKIDYCRLHGIEIFYNMAHLDAEMAGFWAKLPLLRKLMLAHPEVEWIWWMDSDALFTDMTFEIPLEKYE 223 (429)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCEEEeehhhcCcCCCcchhHHHHHHHHHHHCCCceEEEEecCCceeecCCCCCCHhHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeecCcccccccCCCCcccccccceeeccHHHHHHHHHhccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHH
Q 047753 228 DHNLVMHGWKEMVYDEKNWIGLNTGSFLLRNCQWALDLLDAWAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYL 307 (441)
Q Consensus 228 d~nlVI~g~~dlIltq~dw~GLNtGsFLIRNs~WS~~fLd~Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~L 307 (441)
++|+|||||.++++.++||+|||+|||||||||||++|||+|++|||++|+|++|||+|+++|+++|.||++|||||+||
T Consensus 224 ~~NlVihg~~~~l~~~kdW~GLNtGsFLIRNcqWSldlLDaWa~mgp~~~~~~~~g~~l~~~l~~rp~~eaDDQSAlvyL 303 (429)
T PLN03182 224 GYNLVIHGWDELVYDQKSWIGLNTGSFLIRNCQWSLDLLDAWAPMGPKGPIRDEAGKILTAELKGRPAFEADDQSALVYL 303 (429)
T ss_pred CcCeeeccchhhheeccccCccceeeEEEEcCHHHHHHHHHHHhcCCCCchhhhHHHHHHHhhcCCCCCCcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCcccccceeEEecchhcccchhhhhhhhhhhhhccCCCCCCCCcCeEEEccCCccCCCCCCCcHHHHHHHhHhhhcC
Q 047753 308 LITQRDKWGEKVYLESAYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNF 387 (441)
Q Consensus 308 L~~~~~~w~~kv~l~~~y~~ngYw~~iv~~ye~~~~~y~~g~GD~r~pFVvHFaGC~~cg~~~~y~~~~C~~~m~ra~nf 387 (441)
|.+++++|++||++|++|||||||.+||++||+++++||+|.||+||||||||+|||||+++++|++++|+++|+|||||
T Consensus 304 l~~~~~~w~~kv~le~~y~l~Gyw~~iv~~yee~~~~~~~g~gd~rwPfvtHF~GckpC~~~~~y~~~~C~~~m~ra~nF 383 (429)
T PLN03182 304 LLTQRERWGDKVYLENSYYLHGYWVGLVDRYEEMMEKYHPGLGDDRWPFVTHFVGCKPCGGYGDYPVERCLKQMERAFNF 383 (429)
T ss_pred HHhcchhhccceEEeecceeccccHHHHHHHHHHHHhcCCCCCCcccceeEeeccceecCCCCCcCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhcCccccCCCcccccccccccCCcccchhhcCCCCccc
Q 047753 388 GDNQVLNMYGFEHRTLASKKVKRIRNETSTPLEVKDELGIRHPAF 432 (441)
Q Consensus 388 adnqvl~~yg~~h~~l~~~~v~~~~~~~~~pl~~~~~~~~~~~~~ 432 (441)
||||||++|||+|++|+|.+|+||||+|++||++++++++.++.+
T Consensus 384 aDnQvL~~yGf~H~~l~~~~v~~~~~~~~~pl~~~~~~~~~~~~~ 428 (429)
T PLN03182 384 ADNQVLELYGFRHKSLASAEVKRVRNDTSNPLEAKDELGLRHPAF 428 (429)
T ss_pred chHHHHHHhCccccccCccceeehhccCCCcchhhhhhcccCCCC
Confidence 999999999999999999999999999999999999998877654
No 2
>PLN03181 glycosyltransferase; Provisional
Probab=100.00 E-value=1.9e-109 Score=842.90 Aligned_cols=301 Identities=50% Similarity=1.028 Sum_probs=291.4
Q ss_pred CC-CCCCc----------ccccCCCCCCCCCCCCCcEEEEEccCCCCCCCCCchHHHHHHHHHHHHHHHHhCCcEEEecc
Q 047753 108 PN-KHDPS----------GSKRNPTLPNFLRPNKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRIHGIEIFYNMA 176 (441)
Q Consensus 108 ~~-~l~~~----------wl~~hp~~~~~~~~~~prIvIVT~sd~~~c~~~~gd~yl~ksikNk~dYAr~HGY~~~~n~~ 176 (441)
.+ +|||+ ||++||+|+. +++|+|+|||+++|++|++++||+||+++++||++||++|||+++|++.
T Consensus 97 ~~ytl~~~i~~wD~kR~~Wl~~~p~~~~---~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a 173 (453)
T PLN03181 97 LSYSIEKPIKNWDEKRAEWLKLHPSFAP---GAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNA 173 (453)
T ss_pred CceecCCCcCCHHHHHHHHHHhCCCCCC---CCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEecc
Confidence 55 99998 9999999976 7899999999999999999999999999999999999999999999988
Q ss_pred ccCccccCccchHHHHHHHHhcCCCccEEEEEeCCcceeccCCCCCccccCCCCeeecCcccccccCCCCccccccccee
Q 047753 177 LLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKDHNLVMHGWKEMVYDEKNWIGLNTGSFLL 256 (441)
Q Consensus 177 ~ld~~~~~~WaKip~LR~aM~a~P~aEWvwWLDsDAlImN~~~~Lple~~~d~nlVI~g~~dlIltq~dw~GLNtGsFLI 256 (441)
.++++++++|+|+++||++|.+||++|||||||+||+||||+++||+++|+++|+|+||+++++++++||+|||+|||||
T Consensus 174 ~Ld~~~p~~WaKipalRaAM~a~PeAEWfWWLDsDALIMNp~~sLPl~ry~~~NLvvhg~p~~vy~~qdw~GlN~GsFLI 253 (453)
T PLN03181 174 LLHPKMNSYWAKLPVVRAAMLAHPEAEWIWWVDSDAVFTDMDFKLPLHRYRDHNLVVHGWPKLIYEKRSWTALNAGVFLI 253 (453)
T ss_pred ccCccCchhhhHHHHHHHHHHHCCCceEEEEecCCceeecCCCCCCHhhcCCccccccCCcccccccccccccceeeeEE
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccHHHHHHHHHhccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHHHHhCcccccceeEEecchhcccchhhhhh
Q 047753 257 RNCQWALDLLDAWAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYLLITQRDKWGEKVYLESAYYLHGYWGILVD 336 (441)
Q Consensus 257 RNs~WS~~fLd~Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~~~~~~w~~kv~l~~~y~~ngYw~~iv~ 336 (441)
||||||++|||+|++|||++|+|++|||+|+++|++++.+|+||||||+|||.+++++|++||+||++|||||||.+||+
T Consensus 254 RNcqWSl~LLDaWa~Mgp~~p~~~~~G~~l~~~l~~r~~~eaDDQsaLvyll~~~~~~w~~k~ylE~~yy~~GyW~~iv~ 333 (453)
T PLN03181 254 RNCQWSLDFMDAWASMGPASPEYAKWGKILRSTFKDKLFPESDDQSALVYLLYKHKEKWGDKIYLEGEYYFEGYWAEIVG 333 (453)
T ss_pred ecCHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCCCCCCccchHHHHHHHHhccchhccceeeecceeeeeeHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccC----------------------------------CCCCCCCcCeEEEccCCccCCCCC--CCcHHHHHHH
Q 047753 337 RYEEMIENYH----------------------------------PGLGDHRWPLVTHFVGCKPCGKFG--DYPVERCLKQ 380 (441)
Q Consensus 337 ~ye~~~~~y~----------------------------------~g~GD~r~pFVvHFaGC~~cg~~~--~y~~~~C~~~ 380 (441)
+||+++++|+ +|.||+||||||||+|||||++++ +|++++||++
T Consensus 334 ~~e~~~~~y~~~er~~~~lrrrhae~~~~~y~~~re~~~~~~~~~G~g~~R~PfvTHF~GC~pC~g~~n~~Y~~~~C~~~ 413 (453)
T PLN03181 334 RLDNITERYLEMEREDATLRRRHAEKVSERYAAFREEALKGPAGGGKGSWRRPFVTHFTGCQPCSGDHNKMYSGDSCWNG 413 (453)
T ss_pred HHHHHHHHHHHhhhcchhhhhhhhhhhhhhhhhhhhhhhccCCCCCCCCccCcccccccCccccCCCCCCCCCHHHHHHH
Confidence 9999999998 678999999999999999998866 8999999999
Q ss_pred hHhhhcCCchhhhhhcCccccCCC-ccccccc
Q 047753 381 MDRAFNFGDNQVLNMYGFEHRTLA-SKKVKRI 411 (441)
Q Consensus 381 m~ra~nfadnqvl~~yg~~h~~l~-~~~v~~~ 411 (441)
|+||||||||||||+|||+|++|+ +..|.++
T Consensus 414 m~ra~nFaDnQvl~~yGf~h~~l~~~~~v~p~ 445 (453)
T PLN03181 414 MRRALNFADNQVLRAYGFVHADLLDSSTVQPL 445 (453)
T ss_pred HHHHhccchHHHHHHhCcccccccCCCccccC
Confidence 999999999999999999999999 4477765
No 3
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=3.3e-69 Score=543.34 Aligned_cols=333 Identities=35% Similarity=0.617 Sum_probs=262.4
Q ss_pred hhcceehhhhhHHHHhhhhccccCCCCCCCCCchHHHHHHhhhhccccCccchhhhhhccccCCCCCCCCcccccccccc
Q 047753 18 IRHGKITLLCLFMTVIVLRGTIGAGKFGTPEQDIDDIRQHFYAHRKRVEPHRVLEEVQTTDAAKTEDPNNYEKFDMNKLF 97 (441)
Q Consensus 18 ~~~~~~t~~c~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (441)
|+++|.+|+|+++|+|+|+||||.+.||++.++.....-. + +|+|.+ ...+.++...+.+......+.+.
T Consensus 1 m~~~~~~i~~~~~~~iil~~~~~~~~f~~~~~~~~~~~~~--------~-~~~l~~-~~~~~~t~~~~~p~~~~~~~~~~ 70 (364)
T KOG4748|consen 1 MRFVKYKILCVIFTLIILAGTIGLAFFGFRLYFIVKIALS--------K-HRSLLD-SIASSSTDVYEEPSHVSVPELTY 70 (364)
T ss_pred CCccceecccceeeeeehhhHHHhhhcccccccccchhhh--------h-chhhhh-ccccccccccCCCccccccccce
Confidence 5789999999999999999999999999988866544332 1 666666 43333111111111101111111
Q ss_pred cccCccCCCCCC-CCCCcccccCCCCCCCCCCCCCcEEEEEccCCCCCCCCCchHHHHHHHHHHHHHHHHhCCcEEEecc
Q 047753 98 VDEGEDEKRDPN-KHDPSGSKRNPTLPNFLRPNKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRIHGIEIFYNMA 176 (441)
Q Consensus 98 ~~~~~~~~~~~~-~l~~~wl~~hp~~~~~~~~~~prIvIVT~sd~~~c~~~~gd~yl~ksikNk~dYAr~HGY~~~~n~~ 176 (441)
.+. ..-.+. +...+|+..||.++.+.++++++|+|||+|++++|+++.+++|+++++|||++||++|||+++|+++
T Consensus 71 ~~~---~~i~~~~~~~s~~~~~~~~~~~~~~p~~~~IvlL~~S~~~~~~n~~~~~~~~~~ikNridYA~rHgy~~~~~~~ 147 (364)
T KOG4748|consen 71 LDG---PLITTWTTQRSVTLNVHPLFTSFPNPDSDRIVLLTGSDGGPCDNSPGNHYLLKSIKNRIDYARRHGYEFEYKNA 147 (364)
T ss_pred ecc---ceeccccccceeEeecCccccccCCCCCCEEEEEEccCCCCCCCCcccHHHHHHHHhHHHHHHHhCCeEEEEec
Confidence 111 000122 5555699999999988888999999999999999999999999999999999999999999999988
Q ss_pred ccCc---cccCccchHHHHHHHHhcCCCccEEEEEeCCcceeccCCCCCccccCCCCeeecCcc----------------
Q 047753 177 LLDA---EMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKDHNLVMHGWK---------------- 237 (441)
Q Consensus 177 ~ld~---~~~~~WaKip~LR~aM~a~P~aEWvwWLDsDAlImN~~~~Lple~~~d~nlVI~g~~---------------- 237 (441)
..+. +++++|+|+|+||++|++||+||||||||+||+||||+++||+++++..+|+.|+..
T Consensus 148 ~~~~~~~e~~~~W~KiP~Ir~tM~kyP~AeWIWWlD~DAlimn~~lsL~~~ilk~~~L~~~l~~nd~~~~~~~n~~~~~~ 227 (364)
T KOG4748|consen 148 TLDKRYHELPGVWAKLPAIRQTMLKYPDAEWIWWLDQDALIMNPDLSLQDHILKPENLVTHLLRNDQKSINPLNIFRLRP 227 (364)
T ss_pred ccccccccccchhHHhHHHHHHHHHCCCCcEEEEecccchhhCcccchhHHhcCHHHHHHhhccccccccccCCcccccc
Confidence 8766 899999999999999999999999999999999999999999888777666543321
Q ss_pred -----------cccccCCCCcccccccceeeccHHHHHHHHHhccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHH
Q 047753 238 -----------EMVYDEKNWIGLNTGSFLLRNCQWALDLLDAWAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVY 306 (441)
Q Consensus 238 -----------dlIltq~dw~GLNtGsFLIRNs~WS~~fLd~Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~ 306 (441)
.+|++| |++|+|+|||||||++|++.|||+|. +|. + ....+...||.|+.|
T Consensus 228 ~~~~~d~~~~~~~ii~q-D~nG~naGSfLirns~~~~~llD~w~--dp~---l------------~~~~~~~~Eq~al~~ 289 (364)
T KOG4748|consen 228 RTPSLDDLEDIAFIIPQ-DCNGINAGSFLIRNSEWGRLLLDAWN--DPL---L------------YELLWGQKEQDALGH 289 (364)
T ss_pred ccccccchhhhceeccc-CCCCccccceEEecCccchhHHHhcc--CHH---H------------HhhccchHHHHHHHH
Confidence 255555 68999999999999999999999997 342 2 225677899999999
Q ss_pred HHHhCcccccceeEEecchhcccchhhhhhhhhhhhhccCCCCCCCCcCeEEEccCCccCCCCCCCcHHHHHHHhHhhhc
Q 047753 307 LLITQRDKWGEKVYLESAYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFN 386 (441)
Q Consensus 307 LL~~~~~~w~~kv~l~~~y~~ngYw~~iv~~ye~~~~~y~~g~GD~r~pFVvHFaGC~~cg~~~~y~~~~C~~~m~ra~n 386 (441)
++++|+. ..++|.+++++++|+| +.++++.|+++|||||||+|| |..++|+++|+++++
T Consensus 290 ~~e~h~~-l~~~vgilp~r~ins~------------~~~~~~~g~~egdlvvhFaGC--------~~~~~C~~~~~~y~~ 348 (364)
T KOG4748|consen 290 FLENHPQ-LHSHVGILPLRYINSY------------PNGAPGYGYEEGDLVVHFAGC--------YVRNRCLEEMEKYFN 348 (364)
T ss_pred HHhhchh-hhhheeeccHHHHhcC------------CCCCCCCccccCCeEEEeccc--------ccHhHHHHHHHHHHH
Confidence 9988773 5556666666555555 667788889999999999999 457899999999999
Q ss_pred CCchhhhhhcCccccC
Q 047753 387 FGDNQVLNMYGFEHRT 402 (441)
Q Consensus 387 fadnqvl~~yg~~h~~ 402 (441)
|+|||++..|||.|+.
T Consensus 349 ~~~~~~~~~~~~~~~~ 364 (364)
T KOG4748|consen 349 LIDNKQGKLYGFPHEK 364 (364)
T ss_pred HHHHhhhhhhccccCC
Confidence 9999999999999973
No 4
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=100.00 E-value=2.8e-54 Score=417.13 Aligned_cols=211 Identities=39% Similarity=0.725 Sum_probs=44.4
Q ss_pred CCcEEEEEccCCCCCCCCCchH-HHHHHHHHHHHHHHHhCCcEEEec-ccc-CccccCccchHHHHHHHHhcCCCccEEE
Q 047753 130 KPRVLLVTGSSPKPCENPVGDH-YLLKSIKNKIDYCRIHGIEIFYNM-ALL-DAEMAGFWAKLPLIRKLLLSHPEVEFLW 206 (441)
Q Consensus 130 ~prIvIVT~sd~~~c~~~~gd~-yl~ksikNk~dYAr~HGY~~~~n~-~~l-d~~~~~~WaKip~LR~aM~a~P~aEWvw 206 (441)
+|+|||||++++++|.++.+++ |+.++++||++||++|||+++|.. ..+ +++.+++|+|+++||++|++||++||||
T Consensus 2 ~~~vvivt~~d~~~~~~~~~~~~~~~~~~~Nr~~Ya~~HgY~~~~~~~~~~~~~~~~~~W~K~~~lr~~m~~~P~~~wv~ 81 (239)
T PF05637_consen 2 SPKVVIVTASDFESCDKPSGDWSYLKKSIQNRVDYARRHGYDLYYRNIQEYDDPERPGSWAKIPALRAAMKKYPEAEWVW 81 (239)
T ss_dssp -------------------------------HHHHHHHHT-EEEEE-S--S--SHHHHHHTHHHHHHHHHHH-TT-SEEE
T ss_pred cccccccccccccccccccccccccchhHHHHHHHHHhcCCEEEEEChHHcCCCCCChhhHHHHHHHHHHHhCCCCCEEE
Confidence 6899999999999999888876 899999999999999999999843 333 4578899999999999999999999999
Q ss_pred EEeCCcceeccCCCCCccc----------cCCCCee-----------ecCcccccccCCCCcccccccceeeccHHHHHH
Q 047753 207 WMDSDAMFTDMAFEVPWER----------YKDHNLV-----------MHGWKEMVYDEKNWIGLNTGSFLLRNCQWALDL 265 (441)
Q Consensus 207 WLDsDAlImN~~~~Lple~----------~~d~nlV-----------I~g~~dlIltq~dw~GLNtGsFLIRNs~WS~~f 265 (441)
|||+||+||||+++|+... +++.+++ +++....++.++||+|||+||||||||+||++|
T Consensus 82 ~lD~Dali~n~~~~L~~~il~p~~L~~~~~r~~~~~p~~~~~~~~~~~~~~~~~li~t~d~~gLNtGsFliRns~ws~~f 161 (239)
T PF05637_consen 82 WLDSDALIMNPDFSLEEHILSPSRLDSLLLRDVPIVPPDSIIKTYSVIDGNDIHLIITQDWNGLNTGSFLIRNSPWSRDF 161 (239)
T ss_dssp EE-TTEEE------------------------------------------------------------------------
T ss_pred EEcCCeEEEecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999975322 2333332 233333344455799999999999999999999
Q ss_pred HHHhccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHHHHhCcccccceeEEecchhcccchhhhhhhhhhhhhcc
Q 047753 266 LDAWAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYLLITQRDKWGEKVYLESAYYLHGYWGILVDRYEEMIENY 345 (441)
Q Consensus 266 Ld~Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~~~~~~w~~kv~l~~~y~~ngYw~~iv~~ye~~~~~y 345 (441)
||+|+. |. |.. .....++++||+||+|||++|+. ..++++++|+++||+|...... +
T Consensus 162 Ld~w~~--~~---~~~---------~~~~~~~~~EQsAl~~ll~~~~~-~~~~~~~vpq~~~nsy~~~~~~--------~ 218 (239)
T PF05637_consen 162 LDAWAD--PL---YRN---------YDWDQLEFDEQSALEHLLQWHPE-ILSKVALVPQRWFNSYPEDECN--------Y 218 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc--cc---ccc---------ccccccccccccccccccccccc-cccccccccccccccccccccc--------c
Confidence 999973 43 210 12222358999999999999985 7889999999999999776533 4
Q ss_pred CCCCCCCCcCeEEEccCCccCC
Q 047753 346 HPGLGDHRWPLVTHFVGCKPCG 367 (441)
Q Consensus 346 ~~g~GD~r~pFVvHFaGC~~cg 367 (441)
.+..|| |||||+||+.|+
T Consensus 219 ~~~~GD----fvvhfaGC~~~~ 236 (239)
T PF05637_consen 219 QYKEGD----FVVHFAGCKVCG 236 (239)
T ss_dssp ----------------------
T ss_pred cccccc----cccccccccccc
Confidence 555668 999999999986
No 5
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=99.43 E-value=1.4e-13 Score=131.40 Aligned_cols=121 Identities=21% Similarity=0.423 Sum_probs=86.7
Q ss_pred HHHHHHhCCcEEEecc-c--cCccccCccchHHHHHHHHhcC--CCccEEEEEeCCcceeccCCCCCccccCCCCeeecC
Q 047753 161 IDYCRIHGIEIFYNMA-L--LDAEMAGFWAKLPLIRKLLLSH--PEVEFLWWMDSDAMFTDMAFEVPWERYKDHNLVMHG 235 (441)
Q Consensus 161 ~dYAr~HGY~~~~n~~-~--ld~~~~~~WaKip~LR~aM~a~--P~aEWvwWLDsDAlImN~~~~Lple~~~d~nlVI~g 235 (441)
++||+.|||+++.... . +++ .. ..+-|++..++ |+++||+|+|+|..|+||+..|+.-.-.+.+++
T Consensus 2 ~CY~~~~~Y~~~l~~d~~~~C~~-kd-----~fFrRHCvva~~L~~~~~vlflDaDigVvNp~~~iEefid~~~Di~--- 72 (222)
T PF03314_consen 2 RCYCKIHGYPFILAHDTDFKCDQ-KD-----KFFRRHCVVAKILPEYDWVLFLDADIGVVNPNRRIEEFIDEGYDII--- 72 (222)
T ss_pred eEEeeccCCeEEEEecCCCCCcc-hh-----HHHHHHHHHHHHhccCCEEEEEcCCceeecCcccHHHhcCCCCcEE---
Confidence 4799999999996221 1 222 12 35566665553 899999999999999999998873322233332
Q ss_pred cccccccCCCCcccccccceeeccHHHHHHHHHhccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHHHHh
Q 047753 236 WKEMVYDEKNWIGLNTGSFLLRNCQWALDLLDAWAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYLLIT 310 (441)
Q Consensus 236 ~~dlIltq~dw~GLNtGsFLIRNs~WS~~fLd~Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~~ 310 (441)
+.|.++ +| .+.+||||+||++||++||..|++|..+ ....|-..|..||+-+|+.
T Consensus 73 fydR~~---n~-Ei~agsYlvkNT~~~~~fl~~~a~~E~~----------------lP~sfhGtDNGAlH~~L~e 127 (222)
T PF03314_consen 73 FYDRFF---NW-EIAAGSYLVKNTEYSRDFLKEWADYEFK----------------LPNSFHGTDNGALHIFLAE 127 (222)
T ss_pred EEeccc---ch-hhhhccceeeCCHHHHHHHHHHhhhCcc----------------CCCccccCccHHHHHHHHH
Confidence 223332 24 7999999999999999999999987543 1124668999999988874
No 6
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=99.09 E-value=3.8e-11 Score=122.84 Aligned_cols=101 Identities=33% Similarity=0.359 Sum_probs=93.2
Q ss_pred CCCCcccccccceeeccHHHHHHHHHhccCCCCCccccccchhhhhhhc-CCCCCCCCchHHHHHHHHhCcccccceeEE
Q 047753 243 EKNWIGLNTGSFLLRNCQWALDLLDAWAPMGPKGKIRDDAGKILTRELK-GRPVFEADDQSAMVYLLITQRDKWGEKVYL 321 (441)
Q Consensus 243 q~dw~GLNtGsFLIRNs~WS~~fLd~Wa~m~P~~pv~~~~g~~l~~~~~-~~~~~e~~DQsAL~~LL~~~~~~w~~kv~l 321 (441)
+..|+++| +|++|+++|+++.+|+|..|.|++.....+|++|.+... .++.++..+|.+|.+++..|+++|+-++++
T Consensus 214 ~~~~~~~n--~~~~~~~~~~~d~~~~~~~ii~qD~nG~naGSfLirns~~~~~llD~w~dp~l~~~~~~~~Eq~al~~~~ 291 (364)
T KOG4748|consen 214 QKSINPLN--IFRLRPRTPSLDDLEDIAFIIPQDCNGINAGSFLIRNSEWGRLLLDAWNDPLLYELLWGQKEQDALGHFL 291 (364)
T ss_pred ccccccCC--ccccccccccccchhhhceecccCCCCccccceEEecCccchhHHHhccCHHHHhhccchHHHHHHHHHH
Confidence 56799999 999999999999999999999999999999999987666 677788999999999999999999999999
Q ss_pred ecchhcccchhhhhhhhhhhhhccCCC
Q 047753 322 ESAYYLHGYWGILVDRYEEMIENYHPG 348 (441)
Q Consensus 322 ~~~y~~ngYw~~iv~~ye~~~~~y~~g 348 (441)
++.++++|+|..++.|| .+.|++|
T Consensus 292 e~h~~l~~~vgilp~r~---ins~~~~ 315 (364)
T KOG4748|consen 292 ENHPQLHSHVGILPLRY---INSYPNG 315 (364)
T ss_pred hhchhhhhheeeccHHH---HhcCCCC
Confidence 99999999999999985 5888876
No 7
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=98.44 E-value=7.4e-07 Score=83.57 Aligned_cols=172 Identities=20% Similarity=0.234 Sum_probs=102.7
Q ss_pred HHHHHHhCCcEEE-ecc---ccC-------c-cccCccchHHHHHHHHhcCCCccEEEEEeCCcceeccCCCCCccccCC
Q 047753 161 IDYCRIHGIEIFY-NMA---LLD-------A-EMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKD 228 (441)
Q Consensus 161 ~dYAr~HGY~~~~-n~~---~ld-------~-~~~~~WaKip~LR~aM~a~P~aEWvwWLDsDAlImN~~~~Lple~~~d 228 (441)
.++|++.|+..++ ... ..+ + -..-.|.|+.+++.++..-- =||++|+|+++...-+ |.-...+
T Consensus 16 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G~---~vl~~D~Dvv~~~dp~--~~~~~~~ 90 (212)
T PF03407_consen 16 YDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELGY---DVLFSDADVVWLRDPL--PYFENPD 90 (212)
T ss_pred HHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCC---ceEEecCCEEEecCcH--HhhccCC
Confidence 3678889999765 222 110 0 12347899999999997642 2899999999876433 2111234
Q ss_pred CCeeecC--cccccccCCCCcccccccceeeccHHHHHHHHHhccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHH
Q 047753 229 HNLVMHG--WKEMVYDEKNWIGLNTGSFLLRNCQWALDLLDAWAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVY 306 (441)
Q Consensus 229 ~nlVI~g--~~dlIltq~dw~GLNtGsFLIRNs~WS~~fLd~Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~ 306 (441)
.++++-. ...... ......+|+|.|++|+++.+..|++.|...- ...+ ...||.||..
T Consensus 91 ~Di~~~~d~~~~~~~-~~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~-----------------~~~~--~~~DQ~~~n~ 150 (212)
T PF03407_consen 91 ADILFSSDGWDGTNS-DRNGNLVNTGFYYFRPTPRTIAFLEDWLERM-----------------AESP--GCWDQQAFNE 150 (212)
T ss_pred CceEEecCCCcccch-hhcCCccccceEEEecCHHHHHHHHHHHHHH-----------------HhCC--CcchHHHHHH
Confidence 4443311 000100 1112346999999999999999999997421 1111 1249999999
Q ss_pred HHHhCccc-ccceeEEecchhcccchhhhhh-hhhhhhhccCCCCCCCCcCeEEEccCCc
Q 047753 307 LLITQRDK-WGEKVYLESAYYLHGYWGILVD-RYEEMIENYHPGLGDHRWPLVTHFVGCK 364 (441)
Q Consensus 307 LL~~~~~~-w~~kv~l~~~y~~ngYw~~iv~-~ye~~~~~y~~g~GD~r~pFVvHFaGC~ 364 (441)
++...... -.-++.+.|...|.+-+...+. +.. ....+ ..-|+++|+.+|.
T Consensus 151 ~l~~~~~~~~~~~~~~L~~~~f~~g~~~f~~~~~~------~~~~~-~~~p~~vH~n~~~ 203 (212)
T PF03407_consen 151 LLREQAARYGGLRVRFLPPSLFPNGHGYFCQSRDW------AWVPT-KNKPYIVHANCCD 203 (212)
T ss_pred HHHhcccCCcCcEEEEeCHHHeeccccceeecchh------hhhcc-ccccceEEEcCCC
Confidence 99865422 3457888888766221122211 111 11111 3468999999998
No 8
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=97.04 E-value=0.00077 Score=62.86 Aligned_cols=111 Identities=13% Similarity=0.119 Sum_probs=59.9
Q ss_pred ccCccchHHHHHHHHhcC-CCccEEEEEeCCcceeccCCCCCccccCCCCee-ecC-----------c-ccccccCCCCc
Q 047753 182 MAGFWAKLPLIRKLLLSH-PEVEFLWWMDSDAMFTDMAFEVPWERYKDHNLV-MHG-----------W-KEMVYDEKNWI 247 (441)
Q Consensus 182 ~~~~WaKip~LR~aM~a~-P~aEWvwWLDsDAlImN~~~~Lple~~~d~nlV-I~g-----------~-~dlIltq~dw~ 247 (441)
....|.+..+.|-.+... |++|.++|||+|++|+..--+|=.....+..+. ... . ..... ...-.
T Consensus 78 ~~~~~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (250)
T PF01501_consen 78 SKRHFSPATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDNFPNKRFPFSERKQ-PGNKP 156 (250)
T ss_dssp CCTCGGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----HHHHTSTTSSEEECE-STTTT
T ss_pred ccccccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhhhhhhcccchhhccc-Ccccc
Confidence 445565555555444444 899999999999999885211100001111110 000 0 01111 12236
Q ss_pred ccccccceeeccHHHHHHHHH-hccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHHHH
Q 047753 248 GLNTGSFLLRNCQWALDLLDA-WAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYLLI 309 (441)
Q Consensus 248 GLNtGsFLIRNs~WS~~fLd~-Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~ 309 (441)
++|+|++++....|..+-+.. +..+. ..........||+.|-+++.
T Consensus 157 ~fNsGv~l~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~DQ~~ln~~~~ 203 (250)
T PF01501_consen 157 YFNSGVMLFNPSKWRKENILQKLIEWL----------------EQNGMKLGFPDQDILNIVFY 203 (250)
T ss_dssp SEEEEEEEEEHHHHHHHHHHHHHHHHH----------------HHTTTT-SSCHHHHHHHHHT
T ss_pred cccCcEEEEeechhhhhhhhhhhhhhh----------------hhcccccCcCchHHHhhhcc
Confidence 899999999999998764433 32210 01111345689999998885
No 9
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=96.80 E-value=0.047 Score=55.05 Aligned_cols=155 Identities=13% Similarity=0.141 Sum_probs=87.4
Q ss_pred CCCCcEEEEEccCCCCCCCCCchHHHHHHHHHHHHHHHHhCCcEEEeccccCccccCccchHHHHHHHHhcCCCccEEEE
Q 047753 128 PNKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRIHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWW 207 (441)
Q Consensus 128 ~~~prIvIVT~sd~~~c~~~~gd~yl~ksikNk~dYAr~HGY~~~~n~~~ld~~~~~~WaKip~LR~aM~a~P~aEWvwW 207 (441)
+..++|+|||..-... .. .....+..-..+.||.+.--.....+.....|... +.|-.+-+.+++|=|++
T Consensus 28 s~~dlVvLvt~~~~~~----~~-----~~~~~~~~~l~~~~~~v~~v~~~~~~~~~~~~~~~-~tKl~~~~l~~y~kvly 97 (278)
T cd06914 28 SKAKLVLLVPETLLDR----NL-----DDFVRRDLLLARDKVIVKLIPVIIASGGDAYWAKS-LTKLRAFNQTEYDRIIY 97 (278)
T ss_pred CCCCEEEEECCCCChh----hh-----hhHHHHHHHhhccCcEEEEcCcccCCCCCccHHHH-HHHHHhccccceeeEEE
Confidence 4678999999765432 01 11111111124556655421111112234567654 66666666688999999
Q ss_pred EeCCcceecc---CCCCCccccCCCCeeecCcccccccC-CCCcccccccceeeccHHHHHHH-HHhccCCCCCcccccc
Q 047753 208 MDSDAMFTDM---AFEVPWERYKDHNLVMHGWKEMVYDE-KNWIGLNTGSFLLRNCQWALDLL-DAWAPMGPKGKIRDDA 282 (441)
Q Consensus 208 LDsDAlImN~---~~~Lple~~~d~nlVI~g~~dlIltq-~dw~GLNtGsFLIRNs~WS~~fL-d~Wa~m~P~~pv~~~~ 282 (441)
||+|+++.+. -|.+|. ...+ -.. ..| .+|+|+|+|.-+.|...=| +...++.
T Consensus 98 LDaD~l~~~~ideLf~~~~----~~~~---------Aap~~~~-~FNSGvmvi~ps~~~~~~l~~~~~~~~--------- 154 (278)
T cd06914 98 FDSDSIIRHPMDELFFLPN----YIKF---------AAPRAYW-KFASHLMVIKPSKEAFKELMTEILPAY--------- 154 (278)
T ss_pred ecCChhhhcChHHHhcCCc----ccce---------eeecCcc-eecceeEEEeCCHHHHHHHHHHHHHhc---------
Confidence 9999999884 111110 0001 011 124 8999999999999995544 4443221
Q ss_pred chhhhhhhcCCCCCCCCchHHHHHHHHhCcccccceeEEecch
Q 047753 283 GKILTRELKGRPVFEADDQSAMVYLLITQRDKWGEKVYLESAY 325 (441)
Q Consensus 283 g~~l~~~~~~~~~~e~~DQsAL~~LL~~~~~~w~~kv~l~~~y 325 (441)
..+ ....||++|..++......+...+.+.|..
T Consensus 155 --------~~~--~~~~DQdiLN~~~~~~~~~~~~~~~~Lp~~ 187 (278)
T cd06914 155 --------LNK--KNEYDMDLINEEFYNSKQLFKPSVLVLPHR 187 (278)
T ss_pred --------ccC--CCCCChHHHHHHHhCCccccCcceEEcCcc
Confidence 111 145799999999976644455556666653
No 10
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=96.68 E-value=0.0068 Score=58.25 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=60.9
Q ss_pred ccCccchHHHHHHHHhc-CCCccEEEEEeCCcceeccCCCCCccccCCCCee--ecCccc--------ccccCCCCcccc
Q 047753 182 MAGFWAKLPLIRKLLLS-HPEVEFLWWMDSDAMFTDMAFEVPWERYKDHNLV--MHGWKE--------MVYDEKNWIGLN 250 (441)
Q Consensus 182 ~~~~WaKip~LR~aM~a-~P~aEWvwWLDsDAlImN~~~~Lple~~~d~nlV--I~g~~d--------lIltq~dw~GLN 250 (441)
....|.+..+.|=.+-. .|+++.+.|||+|++|...=-+|=...+.+..+. .+.... ..... +-..+|
T Consensus 75 ~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~-~~~yfN 153 (248)
T cd04194 75 TTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQEKKRKRRLGGYD-DGSYFN 153 (248)
T ss_pred ccccccHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHHHHHHHhhcCCCc-ccceee
Confidence 34667777776666544 4789999999999999884111100011222221 111110 01111 235899
Q ss_pred cccceeeccHHHHH-HHHHhccCCCCCccccccchhhhhhhcCC-CCCCCCchHHHHHHHH
Q 047753 251 TGSFLLRNCQWALD-LLDAWAPMGPKGKIRDDAGKILTRELKGR-PVFEADDQSAMVYLLI 309 (441)
Q Consensus 251 tGsFLIRNs~WS~~-fLd~Wa~m~P~~pv~~~~g~~l~~~~~~~-~~~e~~DQsAL~~LL~ 309 (441)
+|+|++.-+.|-.. +.+.+.++ ...+ ......||++|-.++.
T Consensus 154 sGv~l~nl~~~r~~~~~~~~~~~-----------------~~~~~~~~~~~DQd~LN~~~~ 197 (248)
T cd04194 154 SGVLLINLKKWREENITEKLLEL-----------------IKEYGGRLIYPDQDILNAVLK 197 (248)
T ss_pred ecchheeHHHHHHhhhHHHHHHH-----------------HHhCCCceeeCChHHHHHHHh
Confidence 99999988877542 22322111 0111 1234689999998885
No 11
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=96.61 E-value=0.0079 Score=58.31 Aligned_cols=82 Identities=21% Similarity=0.323 Sum_probs=47.7
Q ss_pred CCccEEEEEeCCcceeccCCCCCccccCCCCeeecCcccccccCCCCcccccccceeeccHHHH-HHHHHhccCCCCCcc
Q 047753 200 PEVEFLWWMDSDAMFTDMAFEVPWERYKDHNLVMHGWKEMVYDEKNWIGLNTGSFLLRNCQWAL-DLLDAWAPMGPKGKI 278 (441)
Q Consensus 200 P~aEWvwWLDsDAlImN~~~~Lple~~~d~nlVI~g~~dlIltq~dw~GLNtGsFLIRNs~WS~-~fLd~Wa~m~P~~pv 278 (441)
+.+|-|.|||+|++|...=-+| .+ . +..+.. -.|... -..+|+|+|+++.+.... .+++....
T Consensus 88 ~~~drvlylD~D~~v~~~i~~L-f~-~-~~~~~a--~~d~~~----~~~fNsGv~l~~~~~~~~~~~~~~~~~------- 151 (240)
T cd02537 88 TEYDKVVFLDADTLVLRNIDEL-FD-L-PGEFAA--APDCGW----PDLFNSGVFVLKPSEETFNDLLDALQD------- 151 (240)
T ss_pred cccceEEEEeCCeeEccCHHHH-hC-C-CCceee--ecccCc----cccccceEEEEcCCHHHHHHHHHHHhc-------
Confidence 5689999999999999741111 00 1 111110 011100 147999999999976433 33444321
Q ss_pred ccccchhhhhhhcCCCCCCCCchHHHHHHHHhC
Q 047753 279 RDDAGKILTRELKGRPVFEADDQSAMVYLLITQ 311 (441)
Q Consensus 279 ~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~~~ 311 (441)
...+...||+.|.++++.+
T Consensus 152 --------------~~~~~~~DQdiLN~~~~~~ 170 (240)
T cd02537 152 --------------TPSFDGGDQGLLNSYFSDR 170 (240)
T ss_pred --------------cCCCCCCCHHHHHHHHcCC
Confidence 1113457999999999643
No 12
>PLN00176 galactinol synthase
Probab=95.92 E-value=0.097 Score=54.15 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=30.6
Q ss_pred cccccccceeeccHHH-HHHHHHhccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHHHH
Q 047753 247 IGLNTGSFLLRNCQWA-LDLLDAWAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYLLI 309 (441)
Q Consensus 247 ~GLNtGsFLIRNs~WS-~~fLd~Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~ 309 (441)
..+|+|+|++..+.|. .++++.... .+.....||+.|..++.
T Consensus 182 ~yFNSGVlvinps~~~~~~ll~~l~~---------------------~~~~~f~DQD~LN~~F~ 224 (333)
T PLN00176 182 LYFNAGMFVFEPSLSTYEDLLETLKI---------------------TPPTPFAEQDFLNMFFR 224 (333)
T ss_pred CeEEeEEEEEEcCHHHHHHHHHHHHh---------------------cCCCCCCCHHHHHHHHc
Confidence 4799999999999999 455554321 11223589999999986
No 13
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=94.61 E-value=0.051 Score=52.48 Aligned_cols=108 Identities=14% Similarity=0.090 Sum_probs=59.0
Q ss_pred CccchHHHHHHHHhc-CCCccEEEEEeCCcceeccCC---CCCccccCCCCee-ec-Cc---------ccccccCCCCcc
Q 047753 184 GFWAKLPLIRKLLLS-HPEVEFLWWMDSDAMFTDMAF---EVPWERYKDHNLV-MH-GW---------KEMVYDEKNWIG 248 (441)
Q Consensus 184 ~~WaKip~LR~aM~a-~P~aEWvwWLDsDAlImN~~~---~Lple~~~d~nlV-I~-g~---------~dlIltq~dw~G 248 (441)
..|++..+.|=.+-. .|.++=|+|||+|.+|...=- .+++ .+..+. +. .. ...-... +-.+
T Consensus 77 ~~~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l---~~~~~aav~d~~~~~~~~~~~~~~~~~~-~~~y 152 (246)
T cd00505 77 RPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPL---GGQELAAAPDPGDRREGKYYRQKRSHLA-GPDY 152 (246)
T ss_pred CccccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccC---CCCeEEEccCchhhhccchhhcccCCCC-CCCc
Confidence 345454444443322 377899999999999987411 1111 111111 00 00 0011112 2258
Q ss_pred cccccceeeccHHH-HHHHHHhccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHHHHhC
Q 047753 249 LNTGSFLLRNCQWA-LDLLDAWAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYLLITQ 311 (441)
Q Consensus 249 LNtGsFLIRNs~WS-~~fLd~Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~~~ 311 (441)
+|+|++++....|- .++++..... ...........||++|-.++...
T Consensus 153 fNsGVmlinl~~~r~~~~~~~~~~~----------------~~~~~~~~~~~DQd~LN~~~~~~ 200 (246)
T cd00505 153 FNSGVFVVNLSKERRNQLLKVALEK----------------WLQSLSSLSGGDQDLLNTFFKQV 200 (246)
T ss_pred eeeeeEEEechHHHHHHHHHHHHHH----------------HHhhcccCccCCcHHHHHHHhcC
Confidence 99999999999994 6666553210 00111123468999999998654
No 14
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=94.48 E-value=0.089 Score=52.26 Aligned_cols=153 Identities=16% Similarity=0.207 Sum_probs=82.5
Q ss_pred ccCccchHHHHHHHHhc-CCCccEEEEEeCCcceeccCCCCCcc-ccCCCCeeecCcccccccCCCCcccccccceeecc
Q 047753 182 MAGFWAKLPLIRKLLLS-HPEVEFLWWMDSDAMFTDMAFEVPWE-RYKDHNLVMHGWKEMVYDEKNWIGLNTGSFLLRNC 259 (441)
Q Consensus 182 ~~~~WaKip~LR~aM~a-~P~aEWvwWLDsDAlImN~~~~Lple-~~~d~nlVI~g~~dlIltq~dw~GLNtGsFLIRNs 259 (441)
.+..|++..+.|=.+-. .|+.+=+++||+|+++..-=-+| ++ .+.+.-+- . .. | ++|+|+++|-..
T Consensus 93 ~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL-~~~dl~~~~~a-------a-v~-d--yfNsGV~linl~ 160 (257)
T cd06429 93 KPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTEL-WNTDLGGGVAG-------A-VE-T--SWNPGVNVVNLT 160 (257)
T ss_pred CccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHH-hhCCCCCCEEE-------E-Eh-h--hcccceEEEeHH
Confidence 45689999888887754 37789999999999998731111 01 12221110 0 12 2 799999999888
Q ss_pred HHHHH-----HHHHhccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHHHHhCcccccceeEEecchhcccchhhh
Q 047753 260 QWALD-----LLDAWAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYLLITQRDKWGEKVYLESAYYLHGYWGIL 334 (441)
Q Consensus 260 ~WS~~-----fLd~Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~~~~~~w~~kv~l~~~y~~ngYw~~i 334 (441)
.|-+. +++ |...... .....+..+||++|--++. .++...+..| |.. .+
T Consensus 161 ~wr~~~i~~~~~~-~~~~~~~---------------~~~~~~~~~dqd~ln~~~~-------~~~~~L~~~w-N~~--~l 214 (257)
T cd06429 161 EWRRQNVTETYEK-WMELNQE---------------EEVTLWKLITLPPGLIVFY-------GLTSPLDPSW-HVR--GL 214 (257)
T ss_pred HHHhccHHHHHHH-HHHHhhh---------------cccchhhcCCccHHHHHcc-------CeeEECChHH-ccc--CC
Confidence 77654 333 3211000 0012245679999976653 3344444321 110 01
Q ss_pred hhhhhhhhhccCCCCCCCCcCeEEEccC-CccCCCCCCCcHHHHHH
Q 047753 335 VDRYEEMIENYHPGLGDHRWPLVTHFVG-CKPCGKFGDYPVERCLK 379 (441)
Q Consensus 335 v~~ye~~~~~y~~g~GD~r~pFVvHFaG-C~~cg~~~~y~~~~C~~ 379 (441)
.|+.... ......|-|+||+| -||......++-++.|.
T Consensus 215 --~~~~~~~-----~~~~~~~~IIHy~G~~KPW~~~~~~~~~~~w~ 253 (257)
T cd06429 215 --GYNYGIR-----PQDIKAAAVLHFNGNMKPWLRTAIPSYKELWE 253 (257)
T ss_pred --ccccccc-----ccccCCcEEEEECCCCCCcCCCCCChHHHHHH
Confidence 0110000 01223589999999 46665544555455443
No 15
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=93.57 E-value=0.32 Score=49.95 Aligned_cols=103 Identities=15% Similarity=0.185 Sum_probs=55.7
Q ss_pred HHHHHhCCcEEE---eccccCc-cccCccchHHHHHHHHhc-CC-CccEEEEEeCCcceeccCCCCCccccCCCCe--ee
Q 047753 162 DYCRIHGIEIFY---NMALLDA-EMAGFWAKLPLIRKLLLS-HP-EVEFLWWMDSDAMFTDMAFEVPWERYKDHNL--VM 233 (441)
Q Consensus 162 dYAr~HGY~~~~---n~~~ld~-~~~~~WaKip~LR~aM~a-~P-~aEWvwWLDsDAlImN~~~~Lple~~~d~nl--VI 233 (441)
..++.+|..+.+ +...+.. .....|++..+.|=.+-. .| +++-|++||+|.++...=-+|=.-.+.+..+ |+
T Consensus 75 ~l~~~~~~~i~~~~id~~~~~~~~~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav~ 154 (334)
T PRK15171 75 ALAKQYNTRINIYLINCERLKSLPSTKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAVV 154 (334)
T ss_pred HHHHhcCCeEEEEEeCHHHHhCCcccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEEE
Confidence 456666655442 2222211 124579998888865544 26 6999999999999988411110001221112 11
Q ss_pred -cCcc--------cccccCCCCcccccccceeeccHHHHH
Q 047753 234 -HGWK--------EMVYDEKNWIGLNTGSFLLRNCQWALD 264 (441)
Q Consensus 234 -~g~~--------dlIltq~dw~GLNtGsFLIRNs~WS~~ 264 (441)
.+.. .+......-..+|+||+||-...|-..
T Consensus 155 ~d~~~~~~~~~~~~l~~~~~~~~YFNsGVlliNl~~wRe~ 194 (334)
T PRK15171 155 AEGDAEWWSKRAQSLQTPGLASGYFNSGFLLINIPAWAQE 194 (334)
T ss_pred eccchhHHHHHHHhcCCccccccceecceEEEcHHHHHHh
Confidence 1110 111111112479999999999888754
No 16
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=93.00 E-value=0.42 Score=48.96 Aligned_cols=152 Identities=19% Similarity=0.250 Sum_probs=73.2
Q ss_pred HHHHHhCCcEEEeccccCccccCccch----HHHHHHHHhc-CCCccEEEEEeCCcceeccCCCC-C-ccccCCCCee--
Q 047753 162 DYCRIHGIEIFYNMALLDAEMAGFWAK----LPLIRKLLLS-HPEVEFLWWMDSDAMFTDMAFEV-P-WERYKDHNLV-- 232 (441)
Q Consensus 162 dYAr~HGY~~~~n~~~ld~~~~~~WaK----ip~LR~aM~a-~P~aEWvwWLDsDAlImN~~~~L-p-le~~~d~nlV-- 232 (441)
.|..+.+|.++-- .+.......|.+ ..+.|=.+-. .|+.+=+++||+|.+|.++=-+| . ...+.+..+.
T Consensus 54 ~~~~~i~~~i~~I--~~P~~~~~~ws~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~ 131 (304)
T cd06430 54 LIDRKFNYTLHPI--TFPSGNAAEWKKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAM 131 (304)
T ss_pred hccceeeeEEEEE--ecCccchhhhhhcccHHHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHHhhcCCCeEEEE
Confidence 4455556666521 121111235655 4444433322 27889999999999999862221 0 0112232221
Q ss_pred ec-------Ccccccc--cCCCCcccccccceeeccHHHHHHHHHhccCCCCCccccccchhhhhhhcCC-CCCCCCchH
Q 047753 233 MH-------GWKEMVY--DEKNWIGLNTGSFLLRNCQWALDLLDAWAPMGPKGKIRDDAGKILTRELKGR-PVFEADDQS 302 (441)
Q Consensus 233 I~-------g~~dlIl--tq~dw~GLNtGsFLIRNs~WS~~fLd~Wa~m~P~~pv~~~~g~~l~~~~~~~-~~~e~~DQs 302 (441)
+. +|..... ......|+|+||+|+-...|-..-+.. +|.| +...|.+.+...+.+. -.....||+
T Consensus 132 v~e~~~~~~~~~~~~~~~~~~~~~gFNSGVmLmNL~~wR~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~l~~~DQD 206 (304)
T cd06430 132 APEHEEPNIGWYNRFARHPYYGKTGVNSGVMLMNLTRMRRKYFKN--DMTP---VGLRWEEILMPLYKKYKLKITWGDQD 206 (304)
T ss_pred EecccccchhhhhhhcccCcccccccccceeeeeHHHHHhhhccc--ccch---hhhhHHHHHHHHHHhcccCCCCCCHH
Confidence 10 1211000 011125799999999988887632200 0000 0000111111111111 224468999
Q ss_pred HHHHHHHhCcccccceeEEecc
Q 047753 303 AMVYLLITQRDKWGEKVYLESA 324 (441)
Q Consensus 303 AL~~LL~~~~~~w~~kv~l~~~ 324 (441)
+|--++..+++ +++..|.
T Consensus 207 iLN~v~~~~p~----~~~~Lp~ 224 (304)
T cd06430 207 LINIIFHHNPE----MLYVFPC 224 (304)
T ss_pred HHHHHHcCCCC----eEEEcCc
Confidence 99999986653 4555554
No 17
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=92.23 E-value=0.31 Score=48.99 Aligned_cols=115 Identities=18% Similarity=0.303 Sum_probs=60.0
Q ss_pred CccchH-HHHHHHHhc-CC-CccEEEEEeCCcceeccCCCCCcc---ccCCCCee--ecCcc----ccccc-CCC----C
Q 047753 184 GFWAKL-PLIRKLLLS-HP-EVEFLWWMDSDAMFTDMAFEVPWE---RYKDHNLV--MHGWK----EMVYD-EKN----W 246 (441)
Q Consensus 184 ~~WaKi-p~LR~aM~a-~P-~aEWvwWLDsDAlImN~~~~Lple---~~~d~nlV--I~g~~----dlIlt-q~d----w 246 (441)
..|+.. .+.|=.+-. .| +++=+++||+|.+|.+.=-+| ++ .+.+..++ +.... ..+.. ... -
T Consensus 77 ~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL-~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 155 (280)
T cd06431 77 KHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAEL-WKIFHKFTGQQVLGLVENQSDWYLGNLWKNHRPWPALG 155 (280)
T ss_pred cchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHH-HHHhhhcCCCcEEEEeccchhhhhhhhhhccCCCcccc
Confidence 356554 334444433 37 689999999999999863221 11 12232221 11000 00000 001 1
Q ss_pred cccccccceeeccHHHHH-HHHHhccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHHHHhCc
Q 047753 247 IGLNTGSFLLRNCQWALD-LLDAWAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYLLITQR 312 (441)
Q Consensus 247 ~GLNtGsFLIRNs~WS~~-fLd~Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~~~~ 312 (441)
.++|+|++++-...|-.. +.+.|..+ ..+.+.........||++|--++..++
T Consensus 156 ~yFNsGVmlinL~~wR~~~~~~~~~~~-------------~~~~~~~~~~~~~~DQDiLN~v~~~~~ 209 (280)
T cd06431 156 RGFNTGVILLDLDKLRKMKWESMWRLT-------------AERELMSMLSTSLADQDIFNAVIKQNP 209 (280)
T ss_pred cceeeeeeeeeHHHHHhhCHHHHHHHH-------------HHHHHhhcCCCCcCcHHHHHHHHcCCc
Confidence 389999999988877654 22333211 001111122345689999999997543
No 18
>PLN02829 Probable galacturonosyltransferase
Probab=91.31 E-value=0.84 Score=50.83 Aligned_cols=162 Identities=16% Similarity=0.236 Sum_probs=89.1
Q ss_pred ccCccchHHHHHHHHhc-CCCccEEEEEeCCcceeccCC---CCCccccCCCCe-eec-------------Ccc----cc
Q 047753 182 MAGFWAKLPLIRKLLLS-HPEVEFLWWMDSDAMFTDMAF---EVPWERYKDHNL-VMH-------------GWK----EM 239 (441)
Q Consensus 182 ~~~~WaKip~LR~aM~a-~P~aEWvwWLDsDAlImN~~~---~Lple~~~d~nl-VI~-------------g~~----dl 239 (441)
.+.+|+.+.+.|=.|-. +|+++=|++||+|.|+.+-=- .+++ .+.-+ .+. .+. ..
T Consensus 436 ~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL---~gkviAAVedc~~~f~r~~~~l~fs~p~i~~ 512 (639)
T PLN02829 436 NPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWSIDL---KGNVNGAVETCGESFHRFDRYLNFSNPLISK 512 (639)
T ss_pred CcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHhCCC---CCceEEEeccchhhhhhhhhhhhccchHhhh
Confidence 47889999988887654 488999999999999988411 1121 11100 010 000 01
Q ss_pred cccCCCCcccccccceeeccHHHHHHHH----HhccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHHHHhCcccc
Q 047753 240 VYDEKNWIGLNTGSFLLRNCQWALDLLD----AWAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYLLITQRDKW 315 (441)
Q Consensus 240 Iltq~dw~GLNtGsFLIRNs~WS~~fLd----~Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~~~~~~w 315 (441)
.+..+.| ++|+|+++|=...|-..=+. .|.... .++. ..+|++|--+|.. +
T Consensus 513 ~Fn~~~C-yFNSGVmVINL~~WRe~nITe~y~~wm~~n-----------------~~r~---L~dlgaLPp~Ll~----F 567 (639)
T PLN02829 513 NFDPHAC-GWAYGMNVFDLDEWKRQNITEVYHSWQKLN-----------------HDRQ---LWKLGTLPPGLIT----F 567 (639)
T ss_pred ccCCccc-ceecceEEEeHHHHHHhChHHHHHHHHHHc-----------------cCCc---cccccCCChHHHH----h
Confidence 2233444 79999999998888765432 353211 1111 2467777654432 3
Q ss_pred cceeEEec-chhcccchhhhhhhhhhhhhccCCCCCCCCcCeEEEccCC-ccCCCCCCCcHHHHHHHhH
Q 047753 316 GEKVYLES-AYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGC-KPCGKFGDYPVERCLKQMD 382 (441)
Q Consensus 316 ~~kv~l~~-~y~~ngYw~~iv~~ye~~~~~y~~g~GD~r~pFVvHFaGC-~~cg~~~~y~~~~C~~~m~ 382 (441)
..++...+ .|-+.|+. |+ +.....+.+.|-|+||.|- ||=...+..+.+.+|..+.
T Consensus 568 ~g~i~~LD~rWNv~GLG------y~-----~~v~~~~i~~aaIIHynG~~KPWle~~i~~yr~lW~kYl 625 (639)
T PLN02829 568 WKRTYPLDRSWHVLGLG------YN-----PNVNQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYV 625 (639)
T ss_pred cCceEecChhheecCCC------CC-----cccchhcccCCeEEEECCCCCccccCCcccchHHHHHHH
Confidence 44555444 43344431 11 1011124566799999993 5543333344457776553
No 19
>PLN02769 Probable galacturonosyltransferase
Probab=89.52 E-value=2.6 Score=47.14 Aligned_cols=173 Identities=15% Similarity=0.167 Sum_probs=89.8
Q ss_pred ccCccchHHHHHHHHhc-CCCccEEEEEeCCcceeccCCCCCcc-ccCCCCe-eec--C-----c----ccccccCCCCc
Q 047753 182 MAGFWAKLPLIRKLLLS-HPEVEFLWWMDSDAMFTDMAFEVPWE-RYKDHNL-VMH--G-----W----KEMVYDEKNWI 247 (441)
Q Consensus 182 ~~~~WaKip~LR~aM~a-~P~aEWvwWLDsDAlImN~~~~Lple-~~~d~nl-VI~--g-----~----~dlIltq~dw~ 247 (441)
.+.+++-+-++|=.+-. +|+.+=|++||+|.||..-=-+| ++ .+.+.-+ .+. + . .+.-+..+.|
T Consensus 431 ~~eyiS~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseL-w~iDL~gkviAAVedc~~rl~~~~~yl~~~~F~~~~C- 508 (629)
T PLN02769 431 RTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFL-WNLDMGGKVNGAVQFCGVRLGQLKNYLGDTNFDTNSC- 508 (629)
T ss_pred CcccccHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHH-hcCCCCCCeEEEehhhhhhhhhhhhhhcccCCCcccc-
Confidence 45667776666655533 48899999999999998741111 01 0112100 110 0 0 0112233333
Q ss_pred ccccccceeeccHHHHHHHHH----hccCCCCCccccccchhhhhhhc-CCCCCCCCchHHHHHHHHhCcccccceeEEe
Q 047753 248 GLNTGSFLLRNCQWALDLLDA----WAPMGPKGKIRDDAGKILTRELK-GRPVFEADDQSAMVYLLITQRDKWGEKVYLE 322 (441)
Q Consensus 248 GLNtGsFLIRNs~WS~~fLd~----Wa~m~P~~pv~~~~g~~l~~~~~-~~~~~e~~DQsAL~~LL~~~~~~w~~kv~l~ 322 (441)
++|+|+++|=...|-++-+.. |... ... +...+..++|.++--++ ..++...
T Consensus 509 yFNSGVLLINL~~WRk~nITe~~~~~~~~----------------~~~~~~~~~~~~~Lp~lnlvF-------~g~v~~L 565 (629)
T PLN02769 509 AWMSGLNVIDLDKWRELDVTETYLKLLQK----------------FSKDGEESLRAAALPASLLTF-------QDLIYPL 565 (629)
T ss_pred ccccCeeEeeHHHHHHhCHHHHHHHHHHH----------------hhhcccccccccCcCHHHHHh-------cCeEEEC
Confidence 689999999988888764432 3210 001 12234556677654333 2445555
Q ss_pred cchh-ccc--chhhhhhhhhhhhhccCCCCCCCCcCeEEEccC-CccCCCCCCCcHHHHHHHhHhhhcCCchhhhhhc
Q 047753 323 SAYY-LHG--YWGILVDRYEEMIENYHPGLGDHRWPLVTHFVG-CKPCGKFGDYPVERCLKQMDRAFNFGDNQVLNMY 396 (441)
Q Consensus 323 ~~y~-~ng--Yw~~iv~~ye~~~~~y~~g~GD~r~pFVvHFaG-C~~cg~~~~y~~~~C~~~m~ra~nfadnqvl~~y 396 (441)
+..| +.| |...+ ...+...|-|+||.| -||+...+.++.++.|. +++++ |+..|+.-
T Consensus 566 D~rWNv~gLG~~~~i-------------~~~~i~~paIIHYnG~~KPW~e~~i~~yr~~W~---kYl~~-~~~fl~~C 626 (629)
T PLN02769 566 DDRWVLSGLGHDYGI-------------DEQAIKKAAVLHYNGNMKPWLELGIPKYKKYWK---RFLNR-DDRFMDEC 626 (629)
T ss_pred CHHHccccccccccc-------------cccccCCcEEEEECCCCCCccCCCCChHHHHHH---HHhcc-CChHHhhC
Confidence 4433 111 21111 112345689999999 57776555555555555 44553 44445443
No 20
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=86.49 E-value=2.9 Score=43.34 Aligned_cols=111 Identities=16% Similarity=0.219 Sum_probs=65.3
Q ss_pred cCccchHHHHHHHHhc-CCCccEEEEEeCCcceecc---CCCCCccccCCCCeeecCcc--------cccccCCCCcccc
Q 047753 183 AGFWAKLPLIRKLLLS-HPEVEFLWWMDSDAMFTDM---AFEVPWERYKDHNLVMHGWK--------EMVYDEKNWIGLN 250 (441)
Q Consensus 183 ~~~WaKip~LR~aM~a-~P~aEWvwWLDsDAlImN~---~~~Lple~~~d~nlVI~g~~--------dlIltq~dw~GLN 250 (441)
..-|++..+.|=.+-. +|+.+=+.|+|+|+++.+- .|.++++.+- .-.|..... ..-.....-+++|
T Consensus 78 ~~~~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~-~aaV~D~~~~~~~~~~~~~~~~~~~~~yFN 156 (325)
T COG1442 78 TKRFSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYY-LAAVRDVFSHYMKEGALRLEKGDLEGSYFN 156 (325)
T ss_pred ccchHHHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCCcce-EEEEeehhhhhhhhhhhHhhhcccccccCc
Confidence 4668877777766655 4888999999999999984 2223322100 000111110 0000111225699
Q ss_pred cccceeeccHHHHHHHHHhc-cCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHHHHh
Q 047753 251 TGSFLLRNCQWALDLLDAWA-PMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYLLIT 310 (441)
Q Consensus 251 tGsFLIRNs~WS~~fLd~Wa-~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~~ 310 (441)
+|+.++=+..|-.+-+..=+ .+- . ...-.....||++|..+++.
T Consensus 157 aG~llinl~~W~~~~i~~k~i~~~-------------~---~~~~~~~~~DQdiLN~i~~~ 201 (325)
T COG1442 157 AGVLLINLKLWREENIFEKLIELL-------------K---DKENDLLYPDQDILNMIFED 201 (325)
T ss_pred cceeeehHHHHHHhhhHHHHHHHH-------------h---ccccccCCccccHHHHHHHh
Confidence 99999999999887776522 110 0 00113457899999999974
No 21
>PLN02718 Probable galacturonosyltransferase
Probab=84.00 E-value=4.1 Score=45.40 Aligned_cols=175 Identities=17% Similarity=0.218 Sum_probs=93.5
Q ss_pred cCccchHHHHHHHHhc-CCCccEEEEEeCCcceeccCCCCCcc-ccCCCCe-eec----------------Cccc----c
Q 047753 183 AGFWAKLPLIRKLLLS-HPEVEFLWWMDSDAMFTDMAFEVPWE-RYKDHNL-VMH----------------GWKE----M 239 (441)
Q Consensus 183 ~~~WaKip~LR~aM~a-~P~aEWvwWLDsDAlImN~~~~Lple-~~~d~nl-VI~----------------g~~d----l 239 (441)
+.+|+...+.|=.+-. +|..+=|++||+|.++..-=-+| ++ .+.+.-+ ++. ++.+ .
T Consensus 398 ~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL-~~iDl~~~v~aaVedC~~~~~~~~~~~~~lnfs~p~i~~ 476 (603)
T PLN02718 398 PRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRL-WSLDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPWVAK 476 (603)
T ss_pred cccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHH-hcCCCCCcEEEEeccccccccchhhhhhhhhccchhhhc
Confidence 4689988888877654 58899999999999998741111 00 0111100 010 0111 0
Q ss_pred cccCCCCcccccccceeeccHHHHHHHHH----hccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHHHHhCcccc
Q 047753 240 VYDEKNWIGLNTGSFLLRNCQWALDLLDA----WAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYLLITQRDKW 315 (441)
Q Consensus 240 Iltq~dw~GLNtGsFLIRNs~WS~~fLd~----Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~~~~~~w 315 (441)
-+.++.| ++|+|+++|=...|-..-+.. |.... .++ ...||++|-=++.. +
T Consensus 477 ~fn~~~C-yfNsGVlLIDLk~WReenITe~~~~~l~~n-----------------~~~---~l~dqdaLpp~Llv----F 531 (603)
T PLN02718 477 KFDPKAC-TWAFGMNLFDLEEWRRQKLTSVYHKYLQLG-----------------VKR---PLWKAGSLPIGWLT----F 531 (603)
T ss_pred ccCCCcc-ccccceEEEeHHHHHhcChHHHHHHHHHhc-----------------cCc---cccCcccccHHHHH----h
Confidence 1333444 789999999998888865543 42211 111 23468887422211 3
Q ss_pred cceeEEec-chhcccchhhhhhhhhhhhhccCCCCCCCCcCeEEEccC-CccCCCCCCCcHHHHHHHhHhhhcCCchhhh
Q 047753 316 GEKVYLES-AYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVG-CKPCGKFGDYPVERCLKQMDRAFNFGDNQVL 393 (441)
Q Consensus 316 ~~kv~l~~-~y~~ngYw~~iv~~ye~~~~~y~~g~GD~r~pFVvHFaG-C~~cg~~~~y~~~~C~~~m~ra~nfadnqvl 393 (441)
..++...+ .|-+.|+ .|+.. .+..+.+.|-|+||.| -||+...+.-..+.+|.... |+ |+..|
T Consensus 532 ~gri~~LD~rWNv~gL------G~~~~-----i~~~~i~~aaIIHYnG~~KPWle~~i~~yr~~W~k~v---~~-~~~~l 596 (603)
T PLN02718 532 YNQTVALDKRWHVLGL------GHESG-----VGASDIEQAAVIHYDGVMKPWLDIGIGKYKRYWNIHV---PY-HHPYL 596 (603)
T ss_pred cCceeecChHHhccCc------ccccc-----ccccccCCCEEEEECCCCCccccCChhhHHHHHHhhc---CC-CChHH
Confidence 34444443 3322322 11110 0112445689999999 58886554433458887543 54 34445
Q ss_pred hhcCc
Q 047753 394 NMYGF 398 (441)
Q Consensus 394 ~~yg~ 398 (441)
+.-++
T Consensus 597 ~~Cn~ 601 (603)
T PLN02718 597 QQCNI 601 (603)
T ss_pred HhcCC
Confidence 54443
No 22
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=83.86 E-value=4.9 Score=45.04 Aligned_cols=169 Identities=15% Similarity=0.211 Sum_probs=85.2
Q ss_pred chHHHHHHHHhc-CCCccEEEEEeCCcceeccCCC---CCccccCCCCe-eec-------------Ccc----cccccCC
Q 047753 187 AKLPLIRKLLLS-HPEVEFLWWMDSDAMFTDMAFE---VPWERYKDHNL-VMH-------------GWK----EMVYDEK 244 (441)
Q Consensus 187 aKip~LR~aM~a-~P~aEWvwWLDsDAlImN~~~~---Lple~~~d~nl-VI~-------------g~~----dlIltq~ 244 (441)
+-+-+.|=.+-. +|+++=|++||+|.|+.+.=-+ +++ .+.-+ ++. ++. .--+..+
T Consensus 459 S~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw~iDL---~g~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~ 535 (657)
T PLN02910 459 SMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSIDM---QGMVNGAVETCKESFHRFDKYLNFSNPKISENFDPN 535 (657)
T ss_pred hHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHHhCCc---CCceEEEecccchhhhhhhhhhccCChhhhhccCCC
Confidence 444455544432 3788999999999999875111 111 11100 010 000 1123343
Q ss_pred CCcccccccceeeccHHHH----HHHHHhccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHHHHhCcccccceeE
Q 047753 245 NWIGLNTGSFLLRNCQWAL----DLLDAWAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYLLITQRDKWGEKVY 320 (441)
Q Consensus 245 dw~GLNtGsFLIRNs~WS~----~fLd~Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~~~~~~w~~kv~ 320 (441)
.| ++|+|+++|=-..|-. +.++.|-.+. .+ -...||++|-=.|.. +..+++
T Consensus 536 aC-yfNsGVmVIDL~~WRe~nITe~ye~w~eln-----------------~~---~~L~dqgsLPpgLLv----F~g~i~ 590 (657)
T PLN02910 536 AC-GWAFGMNMFDLKEWRKRNITGIYHYWQDLN-----------------ED---RTLWKLGSLPPGLIT----FYNLTY 590 (657)
T ss_pred Cc-eeecccEEEeHHHHHHhhHHHHHHHHHHhc-----------------cc---ccccccCCCChHHHH----HhCcee
Confidence 44 7889999999999984 3556674331 01 123567777632221 334444
Q ss_pred E-ecchhcccchhhhhhhhhhhhhccCCCCCCCCcCeEEEccCC-ccCCCCCCCcHHHHHHHhHhhhcCCchhhhhhcCc
Q 047753 321 L-ESAYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGC-KPCGKFGDYPVERCLKQMDRAFNFGDNQVLNMYGF 398 (441)
Q Consensus 321 l-~~~y~~ngYw~~iv~~ye~~~~~y~~g~GD~r~pFVvHFaGC-~~cg~~~~y~~~~C~~~m~ra~nfadnqvl~~yg~ 398 (441)
- .+.|-..|+. |+.. .+ ..+.+.|-|+||.|- ||=...+..+.+++|.. +++ -|+..|+.-++
T Consensus 591 pLD~rWNv~GLG------yd~~--v~---~~~i~~AAVLHynG~~KPWl~l~i~~Yr~~W~k---Yl~-~d~~fl~~Cni 655 (657)
T PLN02910 591 PLDRSWHVLGLG------YDPA--LN---QTEIENAAVVHYNGNYKPWLDLAIAKYKPYWSR---YVQ-YDNPYLQLCNI 655 (657)
T ss_pred ecCchheecCCC------CCcc--cc---cccccCcEEEEeCCCCCcccccCcccchHHHHH---Hcc-CCChHHHhCCC
Confidence 3 3344344431 1111 11 124456899999995 33222222333455554 455 35555555443
No 23
>PLN02742 Probable galacturonosyltransferase
Probab=83.40 E-value=3.3 Score=45.51 Aligned_cols=162 Identities=15% Similarity=0.149 Sum_probs=86.1
Q ss_pred cCccchHHHHHHHHhc-CCCccEEEEEeCCcceeccCCCCCcc-ccCCCCe-ee-----------------cCccccccc
Q 047753 183 AGFWAKLPLIRKLLLS-HPEVEFLWWMDSDAMFTDMAFEVPWE-RYKDHNL-VM-----------------HGWKEMVYD 242 (441)
Q Consensus 183 ~~~WaKip~LR~aM~a-~P~aEWvwWLDsDAlImN~~~~Lple-~~~d~nl-VI-----------------~g~~dlIlt 242 (441)
+.+|+-+.++|=.+-. +|..+=|++||+|.++..-=-+| ++ .+.+.-+ .+ +......+.
T Consensus 333 p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL-~~~DL~~~viaAVedC~~~f~ry~~yLnfS~p~i~~~f~ 411 (534)
T PLN02742 333 PKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPL-FSIDLHGNVNGAVETCLETFHRYHKYLNFSHPLISSHFD 411 (534)
T ss_pred cccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHH-hcCCCCCCEEEEeCchhhhhhhhhhhhcccchhhhccCC
Confidence 6778888888877654 58899999999999998741111 00 0111100 00 011122334
Q ss_pred CCCCcccccccceeeccHHHHHHH----HHhccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHHHHhCcccccce
Q 047753 243 EKNWIGLNTGSFLLRNCQWALDLL----DAWAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYLLITQRDKWGEK 318 (441)
Q Consensus 243 q~dw~GLNtGsFLIRNs~WS~~fL----d~Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~~~~~~w~~k 318 (441)
.+.| ++|+|+++|=-..|-+.-+ +.|..... .-...||++|--+|.. +.++
T Consensus 412 ~~aC-~fNsGV~ViDL~~WRe~nITe~~~~w~e~n~--------------------~~~l~d~gaLpp~LLa----F~g~ 466 (534)
T PLN02742 412 PDAC-GWAFGMNVFDLVAWRKANVTAIYHYWQEQNV--------------------DRTLWKLGTLPPGLLT----FYGL 466 (534)
T ss_pred CCcc-ccccCcEEEeHHHHHhhcHHHHHHHHHHhcc--------------------ccccccccccchHHHH----HcCc
Confidence 5555 7899999999999986544 34533211 1123466676544332 2334
Q ss_pred eEEec-chhcccchhhhhhhhhhhhhccCCCCCCCCcCeEEEccCC-ccCCCCCCCcHHHHHHHh
Q 047753 319 VYLES-AYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGC-KPCGKFGDYPVERCLKQM 381 (441)
Q Consensus 319 v~l~~-~y~~ngYw~~iv~~ye~~~~~y~~g~GD~r~pFVvHFaGC-~~cg~~~~y~~~~C~~~m 381 (441)
+...+ .+-..|+ .|+. .+. ..+.+.|-|+||.|- ||+...+..+....|...
T Consensus 467 ~~~LD~rWNv~gL------G~~~---~v~--~~~i~~aaILHynG~~KPWl~~~i~~yr~~W~kY 520 (534)
T PLN02742 467 TEPLDRRWHVLGL------GYDT---NID--PRLIESAAVLHFNGNMKPWLKLAIERYKPLWERY 520 (534)
T ss_pred ceecChhheeccc------cccc---ccc--hhhccCCeEEEECCCCCcccccCCcccchHHHHH
Confidence 44333 3323221 1110 011 114456799999997 777654432333555543
No 24
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=77.57 E-value=1.3 Score=44.88 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=17.7
Q ss_pred CCccEEEEEeCCcceeccCC
Q 047753 200 PEVEFLWWMDSDAMFTDMAF 219 (441)
Q Consensus 200 P~aEWvwWLDsDAlImN~~~ 219 (441)
|..+||+|+|+|.+.+.+++
T Consensus 141 p~~swVlWlDaDIv~~P~~l 160 (269)
T PF03452_consen 141 PWHSWVLWLDADIVETPPTL 160 (269)
T ss_pred CcccEEEEEecCcccCChHH
Confidence 89999999999999777765
No 25
>PLN02523 galacturonosyltransferase
Probab=70.44 E-value=15 Score=40.68 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=26.0
Q ss_pred CccchHHHHHHHHhc-CCCccEEEEEeCCcceecc
Q 047753 184 GFWAKLPLIRKLLLS-HPEVEFLWWMDSDAMFTDM 217 (441)
Q Consensus 184 ~~WaKip~LR~aM~a-~P~aEWvwWLDsDAlImN~ 217 (441)
.+++..-+.|=.+-. +|+.+=|++||+|.|+..-
T Consensus 358 ~ylS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~D 392 (559)
T PLN02523 358 KYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKD 392 (559)
T ss_pred chhhHHHHHHHHHHHHhcccCeEEEEeCCEEecCC
Confidence 456666677766544 3889999999999999774
No 26
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=62.77 E-value=15 Score=36.29 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=16.3
Q ss_pred C-CccEEEEEeCCcceecc
Q 047753 200 P-EVEFLWWMDSDAMFTDM 217 (441)
Q Consensus 200 P-~aEWvwWLDsDAlImN~ 217 (441)
| +++=+++||+|+++.+.
T Consensus 93 P~~vdkvLYLD~Dilv~~d 111 (248)
T cd06432 93 PLNVDKVIFVDADQIVRTD 111 (248)
T ss_pred hhccCEEEEEcCCceeccc
Confidence 6 58999999999999986
No 27
>PLN02867 Probable galacturonosyltransferase
Probab=56.35 E-value=44 Score=37.13 Aligned_cols=34 Identities=15% Similarity=0.333 Sum_probs=26.1
Q ss_pred cCccchHHHHHHHHhc-CCCccEEEEEeCCcceec
Q 047753 183 AGFWAKLPLIRKLLLS-HPEVEFLWWMDSDAMFTD 216 (441)
Q Consensus 183 ~~~WaKip~LR~aM~a-~P~aEWvwWLDsDAlImN 216 (441)
|.+=+.+.++|=++-. +|+++=|++||+|.|+..
T Consensus 325 pkylS~lnYlRflIPeLLP~LdKVLYLD~DVVVqg 359 (535)
T PLN02867 325 PSCLSLLNHLRIYIPELFPDLNKIVFLDDDVVVQH 359 (535)
T ss_pred hhhhhHHHHHHHHHHHHhhccCeEEEecCCEEEcC
Confidence 4455666677766644 488999999999999987
No 28
>TIGR01606 holin_BlyA holin, BlyA family. This family represents a BlyA, a small holin found in Borrelia circular plasmids that prove to be temperate phage. This protein was previously proposed to be an hemolysin. BlyA is small (67 residues) and contains two largely hydrophobic helices and a highly charged C-terminus.
Probab=50.15 E-value=7.1 Score=31.32 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=22.7
Q ss_pred HHHhhhcceehhhhhHHHHhhhhcccc
Q 047753 14 IQRVIRHGKITLLCLFMTVIVLRGTIG 40 (441)
Q Consensus 14 ~~~~~~~~~~t~~c~~~t~~~l~~~~~ 40 (441)
+--+++|.|...+.+|+|++||.+-+-
T Consensus 9 fL~~l~niklI~lmifi~~~IL~~~l~ 35 (63)
T TIGR01606 9 FLLQLINIKLIKLMIFISIFILSLGLI 35 (63)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999999987543
No 29
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=43.12 E-value=33 Score=27.89 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=21.8
Q ss_pred HHHHHHhcCCCccEEEEEeCCcceeccCC
Q 047753 191 LIRKLLLSHPEVEFLWWMDSDAMFTDMAF 219 (441)
Q Consensus 191 ~LR~aM~a~P~aEWvwWLDsDAlImN~~~ 219 (441)
++.++...+.+++|++++|+|=++..+.-
T Consensus 61 ~~~~~~~~~~~~dWvl~~D~DEfl~~~~~ 89 (97)
T PF13704_consen 61 WRNALIERAFDADWVLFLDADEFLVPPPG 89 (97)
T ss_pred HHHHHHHhCCCCCEEEEEeeeEEEecCCC
Confidence 44444444568899999999999998764
No 30
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=40.76 E-value=1.5e+02 Score=26.96 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=23.3
Q ss_pred CccchHHHHHHHHhcCCCccEEEEEeCCcceeccCC
Q 047753 184 GFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAF 219 (441)
Q Consensus 184 ~~WaKip~LR~aM~a~P~aEWvwWLDsDAlImN~~~ 219 (441)
+.-.|...+..++. +...|||+++|+|..+ +|+.
T Consensus 70 g~~~~~~~~n~g~~-~a~~d~i~~~D~D~~~-~~~~ 103 (196)
T cd02520 70 GINPKVNNLIKGYE-EARYDILVISDSDISV-PPDY 103 (196)
T ss_pred CCCHhHHHHHHHHH-hCCCCEEEEECCCceE-ChhH
Confidence 33356666655554 4678999999999865 5554
No 31
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=36.88 E-value=1e+02 Score=29.42 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=40.4
Q ss_pred EEEEccCCCCCCCCCchHHHHHHHHH--HHHHHH-------HhCCcEEEecccc-CccccCccchHHHHHHHHh--cCCC
Q 047753 134 LLVTGSSPKPCENPVGDHYLLKSIKN--KIDYCR-------IHGIEIFYNMALL-DAEMAGFWAKLPLIRKLLL--SHPE 201 (441)
Q Consensus 134 vIVT~sd~~~c~~~~gd~yl~ksikN--k~dYAr-------~HGY~~~~n~~~l-d~~~~~~WaKip~LR~aM~--a~P~ 201 (441)
+||++.++. +.++.+.+++ +++|-. .+.|++++-.... |......++...+++.+.. +...
T Consensus 1 v~ip~yNE~-------~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d~~~gk~~~~~~~~~~~~~~~~~a~ 73 (244)
T cd04190 1 VCVTMYNED-------EEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIKKNRGKRDSQLWFFNYFCRVLFPDD 73 (244)
T ss_pred CEEeeecCC-------HHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCcccccCcchHHHHHHHHHHHHHhhcCC
Confidence 466666653 2456666663 455653 4567777522221 2222222222223333322 2357
Q ss_pred ccEEEEEeCCcceec
Q 047753 202 VEFLWWMDSDAMFTD 216 (441)
Q Consensus 202 aEWvwWLDsDAlImN 216 (441)
.|||+.+|+|+++-.
T Consensus 74 ~e~i~~~DaD~~~~~ 88 (244)
T cd04190 74 PEFILLVDADTKFDP 88 (244)
T ss_pred CCEEEEECCCCcCCH
Confidence 899999999999843
No 32
>PF05102 Holin_BlyA: holin, BlyA family; InterPro: IPR006493 This family is represented by BlyA, a small holin found in Borrelia circular plasmids that prove to be temperate phage []. This protein was previously proposed to be a haemolysin. BlyA is small (67 residues) and contains two largely hydrophobic helices and a highly charged C terminus.
Probab=35.77 E-value=16 Score=29.30 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=21.9
Q ss_pred HHHhhhcceehhhhhHHHHhhhhccc
Q 047753 14 IQRVIRHGKITLLCLFMTVIVLRGTI 39 (441)
Q Consensus 14 ~~~~~~~~~~t~~c~~~t~~~l~~~~ 39 (441)
+--+++|.|+..+.+|+|+++|.+-+
T Consensus 9 fl~~l~~iklI~~~ifI~v~IL~~ii 34 (61)
T PF05102_consen 9 FLSNLNNIKLIILMIFITVLILPLII 34 (61)
T ss_pred HHHhcccchhhHHHHHHHHHHHHHHH
Confidence 45578999999999999999996544
No 33
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=35.23 E-value=2.5e+02 Score=27.65 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=23.4
Q ss_pred hHHHHHHHHhcC-CCccEEEEEeCCccee
Q 047753 188 KLPLIRKLLLSH-PEVEFLWWMDSDAMFT 215 (441)
Q Consensus 188 Kip~LR~aM~a~-P~aEWvwWLDsDAlIm 215 (441)
|...|..++.+. .+.|+|..||+|.++.
T Consensus 81 Kag~l~~~~~~~~~~~~~i~~~DaD~~~~ 109 (254)
T cd04191 81 KAGNIADFCRRWGSRYDYMVVLDADSLMS 109 (254)
T ss_pred cHHHHHHHHHHhCCCCCEEEEEeCCCCCC
Confidence 888999988753 5779999999998764
No 34
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=34.90 E-value=54 Score=31.64 Aligned_cols=72 Identities=7% Similarity=0.119 Sum_probs=39.4
Q ss_pred EEEEEccCCCCCCCCCchHHHHHHHHHHHHHHHHhCCcEEEeccccCccccCccchHHHHHHHHhcCCCccEEEEEeCCc
Q 047753 133 VLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRIHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDA 212 (441)
Q Consensus 133 IvIVT~sd~~~c~~~~gd~yl~ksikNk~dYAr~HGY~~~~n~~~ld~~~~~~WaKip~LR~aM~a~P~aEWvwWLDsDA 212 (441)
|.||+.++.. .++.+.+++=...----|+.+.+ + ...+.++--.+..++|.+ ..++|++||.+|.
T Consensus 1 isiI~c~n~~--------~~~~~~~~~i~~~~~~~~~~i~i-----~-~~~~~~s~~~~yN~a~~~-a~~~ylvflHqDv 65 (217)
T PF13712_consen 1 ISIIICVNDE--------ELYEECLRSIKRLIGPPGELIEI-----D-NVRNAKSMAAAYNEAMEK-AKAKYLVFLHQDV 65 (217)
T ss_dssp EEEEEEES-H--------HHHHHHHHHHHHTT--TEEEEEE-----E--SSS-S-TTTHHHHHGGG---SSEEEEEETTE
T ss_pred CEEEEEECCH--------HHHHHHHHHHHhhCCCCceEEEE-----e-ccCCCcCHHHHHHHHHHh-CCCCEEEEEeCCe
Confidence 6778877652 23455555433332222333222 1 122334455678888877 7889999999999
Q ss_pred ceeccCC
Q 047753 213 MFTDMAF 219 (441)
Q Consensus 213 lImN~~~ 219 (441)
.|.+.++
T Consensus 66 ~i~~~~~ 72 (217)
T PF13712_consen 66 FIINENW 72 (217)
T ss_dssp E-SSHHH
T ss_pred EEcchhH
Confidence 9999765
No 35
>PF11201 DUF2982: Protein of unknown function (DUF2982); InterPro: IPR021367 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=34.79 E-value=70 Score=30.03 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHH-hCCcEEEeccccCccccCccchHHHHHHHHh
Q 047753 153 LLKSIKNKIDYCRI-HGIEIFYNMALLDAEMAGFWAKLPLIRKLLL 197 (441)
Q Consensus 153 l~ksikNk~dYAr~-HGY~~~~n~~~ld~~~~~~WaKip~LR~aM~ 197 (441)
+...+.||..|-+. .||++|+....+|.+ .|.=+.++|+.+.
T Consensus 109 l~AMfanRm~~lr~~lGYdlfi~~~~LDR~---~~eFv~Llr~~~a 151 (152)
T PF11201_consen 109 LIAMFANRMQYLRQLLGYDLFIPASDLDRD---PEEFVGLLRRYQA 151 (152)
T ss_pred HHHHHHHHHHHHHHhcCceEEeEhhhccCC---HHHHHHHHHHHHh
Confidence 67888999999887 599999977777643 3334567776653
No 36
>PF01539 HCV_env: Hepatitis C virus envelope glycoprotein E1; InterPro: IPR002519 Poliovirus infection leads to drastic alterations in membrane permeability late during infection. Proteins 2B and 2BC enhance membrane permeability [, ].; GO: 0019031 viral envelope; PDB: 2KNU_A.
Probab=30.86 E-value=16 Score=35.16 Aligned_cols=29 Identities=28% Similarity=0.709 Sum_probs=0.0
Q ss_pred eEEEccCCccCCCCCCCcHHHHHHHhHhhhc
Q 047753 356 LVTHFVGCKPCGKFGDYPVERCLKQMDRAFN 386 (441)
Q Consensus 356 FVvHFaGC~~cg~~~~y~~~~C~~~m~ra~n 386 (441)
.|.|-.||-||-+.++-+ +||-.....+.
T Consensus 27 ~iLH~PGCVPCvr~~N~s--rCW~pvtPtlA 55 (190)
T PF01539_consen 27 AILHLPGCVPCVREGNTS--RCWVPVTPTLA 55 (190)
T ss_dssp -------------------------------
T ss_pred eEeecCCceeEEeeCCce--eeEEecCccee
Confidence 999999999998766655 99998876544
No 37
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=30.53 E-value=2.9e+02 Score=25.39 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=20.7
Q ss_pred hHHHHHHHHhcC-CCccEEEEEeCCcceeccCC
Q 047753 188 KLPLIRKLLLSH-PEVEFLWWMDSDAMFTDMAF 219 (441)
Q Consensus 188 Kip~LR~aM~a~-P~aEWvwWLDsDAlImN~~~ 219 (441)
|..++..++... ...|||+++|+|.++ .|+.
T Consensus 70 ~~~a~n~g~~~a~~~~d~i~~lD~D~~~-~~~~ 101 (236)
T cd06435 70 KAGALNYALERTAPDAEIIAVIDADYQV-EPDW 101 (236)
T ss_pred chHHHHHHHHhcCCCCCEEEEEcCCCCc-CHHH
Confidence 445566665543 357999999999764 5544
No 38
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=30.05 E-value=1.5e+02 Score=26.80 Aligned_cols=34 Identities=9% Similarity=0.142 Sum_probs=23.8
Q ss_pred CccchHHHHHHHHhcCCCccEEEEEeCCcceeccCC
Q 047753 184 GFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAF 219 (441)
Q Consensus 184 ~~WaKip~LR~aM~a~P~aEWvwWLDsDAlImN~~~ 219 (441)
....|...+..++. ....|||+++|+|+++. ++.
T Consensus 66 ~~~g~~~a~n~g~~-~~~~d~i~~~D~D~~~~-~~~ 99 (229)
T cd04192 66 SISGKKNALTTAIK-AAKGDWIVTTDADCVVP-SNW 99 (229)
T ss_pred ccchhHHHHHHHHH-HhcCCEEEEECCCcccC-HHH
Confidence 44556666666664 45789999999999774 443
No 39
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=28.99 E-value=41 Score=30.87 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=23.0
Q ss_pred CccchHHHHHHHHhcCCCccEEEEEeCCcceeccCC
Q 047753 184 GFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAF 219 (441)
Q Consensus 184 ~~WaKip~LR~aM~a~P~aEWvwWLDsDAlImN~~~ 219 (441)
+...|..++..++..- +.|||+++|+|+++ +|++
T Consensus 70 g~~~k~~a~n~~~~~~-~~d~i~~lD~D~~~-~p~~ 103 (228)
T PF13641_consen 70 GPGGKARALNEALAAA-RGDYILFLDDDTVL-DPDW 103 (228)
T ss_dssp HHHHHHHHHHHHHHH----SEEEEE-SSEEE--CHH
T ss_pred CcchHHHHHHHHHHhc-CCCEEEEECCCcEE-CHHH
Confidence 3346778888888764 58999999999998 7765
No 40
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=28.89 E-value=2.4e+02 Score=26.06 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=22.3
Q ss_pred hHHHHHHHHhcCCCccEEEEEeCCcceeccCC
Q 047753 188 KLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAF 219 (441)
Q Consensus 188 Kip~LR~aM~a~P~aEWvwWLDsDAlImN~~~ 219 (441)
|..++...+. ..+.+||+++|+|+++ +|+.
T Consensus 75 k~~a~n~g~~-~a~~~~i~~~DaD~~~-~~~~ 104 (232)
T cd06437 75 KAGALAEGMK-VAKGEYVAIFDADFVP-PPDF 104 (232)
T ss_pred chHHHHHHHH-hCCCCEEEEEcCCCCC-ChHH
Confidence 5566666664 3578999999999986 5554
No 41
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=28.81 E-value=2.7e+02 Score=28.50 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=48.4
Q ss_pred CCcEEEEEccCCCCCCCCCchHHHHHHHHHHHHHHHHh---CCcEEE-e----ccccCc--------------cccCccc
Q 047753 130 KPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRIH---GIEIFY-N----MALLDA--------------EMAGFWA 187 (441)
Q Consensus 130 ~prIvIVT~sd~~~c~~~~gd~yl~ksikNk~dYAr~H---GY~~~~-n----~~~ld~--------------~~~~~Wa 187 (441)
+-+|+|.....++ +. ..++.-..=|++| ||.++| - ...+.. .....|.
T Consensus 33 n~tIgl~vfatGk-----Y~-----~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~~p~v~lg~~r~~~V~~v~~~~~W~ 102 (271)
T cd02515 33 NITIGLTVFAVGK-----YT-----EFLERFLESAEKHFMVGYRVIYYIFTDKPAAVPEVELGPGRRLTVLKIAEESRWQ 102 (271)
T ss_pred CCEEEEEEEEecc-----HH-----HHHHHHHHHHHHhccCCCeeEEEEEeCCcccCcccccCCCceeEEEEeccccCCc
Confidence 3467776666553 22 2445555557776 777654 1 111111 1235787
Q ss_pred hHHHHHHHHh-----cC--CCccEEEEEeCCcceecc
Q 047753 188 KLPLIRKLLL-----SH--PEVEFLWWMDSDAMFTDM 217 (441)
Q Consensus 188 Kip~LR~aM~-----a~--P~aEWvwWLDsDAlImN~ 217 (441)
-+.++|--|. ++ -+++|++++|+|++|.++
T Consensus 103 ~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ 139 (271)
T cd02515 103 DISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGP 139 (271)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeec
Confidence 7777776555 22 389999999999999996
No 42
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=28.42 E-value=61 Score=30.04 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=24.7
Q ss_pred cchHHHHHHHHhcCCCccEEEEEeCCcceeccCC
Q 047753 186 WAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAF 219 (441)
Q Consensus 186 WaKip~LR~aM~a~P~aEWvwWLDsDAlImN~~~ 219 (441)
=.|+--|..++.+..++++|++.|+|+.+ +|+.
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v-~p~~ 48 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRV-PPDY 48 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeE-CHHH
Confidence 35777777776654688999999999976 4554
No 43
>COG3085 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.14 E-value=17 Score=32.02 Aligned_cols=37 Identities=24% Similarity=0.513 Sum_probs=29.2
Q ss_pred HHhHh--hhcCCchhhhhhcCccccCCCccccccccccc
Q 047753 379 KQMDR--AFNFGDNQVLNMYGFEHRTLASKKVKRIRNET 415 (441)
Q Consensus 379 ~~m~r--a~nfadnqvl~~yg~~h~~l~~~~v~~~~~~~ 415 (441)
+++.| .|..+.-|||..||+.-..|.|.+..++-++-
T Consensus 19 RGFsrhGDfTikE~q~LeryG~af~~LdsGereP~t~eE 57 (112)
T COG3085 19 RGFSRHGDFTIKEAQLLERYGYAFNELDSGEREPVTEEE 57 (112)
T ss_pred CcccccCCeehhHHHHHHHHHHHHHhhhccccCCCchHH
Confidence 45555 35677889999999999999999988875443
No 44
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=24.03 E-value=92 Score=26.31 Aligned_cols=32 Identities=3% Similarity=-0.039 Sum_probs=22.8
Q ss_pred ccchHHHHHHHHhcCCCccEEEEEeCCcceeccC
Q 047753 185 FWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMA 218 (441)
Q Consensus 185 ~WaKip~LR~aM~a~P~aEWvwWLDsDAlImN~~ 218 (441)
...+..++..++..- ..+|++++|+|..+. ++
T Consensus 59 ~~g~~~a~n~~~~~~-~~~~i~~~D~D~~~~-~~ 90 (166)
T cd04186 59 NLGFGAGNNQGIREA-KGDYVLLLNPDTVVE-PG 90 (166)
T ss_pred CcChHHHhhHHHhhC-CCCEEEEECCCcEEC-cc
Confidence 344556666666543 789999999998864 44
No 45
>cd04860 AE_Prim_S AE_Prim_S: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/E) DNA primases. Primases are DNA-dependent RNA polymerases which synthesis the short RNA primers required for DNA replication. In addition to its catalytic role in replication, DNA primase may play a role in coupling replication to DNA damage repair and in checkpoint control during S phase. In eukaryotes, this small catalytically active primase subunit (p50) and a larger primase subunit (p60), referred to jointly as the core primase, associate with the B subunit and the DNA polymerase alpha subunit in a complex, called Pol alpha-pri. The function of the larger primase subunit is unclear. Included in this group are Pfu41 and Pfu46, these two proteins comprise the primase complex of the archaea Pyrococcus furiosus; Pfu41 and Pfu46 have sequence identity to the eukaryotic p50 and p60 primase proteins respectively. Pfu41 preferentially uses dNTPs as substrate. Pfu46 regulat
Probab=22.52 E-value=1e+02 Score=30.48 Aligned_cols=41 Identities=22% Similarity=0.427 Sum_probs=29.4
Q ss_pred EEccCCccCC-CCCCCcHHHHHHHhHhhhcCCchhhhhhcCccc
Q 047753 358 THFVGCKPCG-KFGDYPVERCLKQMDRAFNFGDNQVLNMYGFEH 400 (441)
Q Consensus 358 vHFaGC~~cg-~~~~y~~~~C~~~m~ra~nfadnqvl~~yg~~h 400 (441)
+|..+|..|. +...+ ..||+.|..|.---+..+-+-+||.|
T Consensus 87 ~d~d~~r~cc~~~~ic--~kCw~~~~~a~~~l~~~L~~dFGf~~ 128 (232)
T cd04860 87 DDYDDVRTCCSGATIC--EKCWKFAKEAVKILDDILREDFGFKH 128 (232)
T ss_pred CcCCCcccccccccHH--HHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 5778877763 33334 48999999987777665555599998
No 46
>PLN03153 hypothetical protein; Provisional
Probab=21.84 E-value=75 Score=35.33 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=16.1
Q ss_pred CCCccEEEEEeCCccee
Q 047753 199 HPEVEFLWWMDSDAMFT 215 (441)
Q Consensus 199 ~P~aEWvwWLDsDAlIm 215 (441)
.|+++|+.++|.|++|.
T Consensus 208 ~pd~kWfVf~DDDTyf~ 224 (537)
T PLN03153 208 LPDVRWFVLGDDDTIFN 224 (537)
T ss_pred CCCCCEEEEecCCcccc
Confidence 59999999999999996
No 47
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.02 E-value=14 Score=38.38 Aligned_cols=60 Identities=20% Similarity=0.388 Sum_probs=42.5
Q ss_pred HHHHHHhCcccccceeEEecch----hcccchhhhhhhhhhhhhcc--CCCCCCCCcCeEEEccCCc
Q 047753 304 MVYLLITQRDKWGEKVYLESAY----YLHGYWGILVDRYEEMIENY--HPGLGDHRWPLVTHFVGCK 364 (441)
Q Consensus 304 L~~LL~~~~~~w~~kv~l~~~y----~~ngYw~~iv~~ye~~~~~y--~~g~GD~r~pFVvHFaGC~ 364 (441)
|.|++...+. |-+++.++..| -+|.||.++..+|......| ....||..|||+-.|+|--
T Consensus 187 lhymvapdkv-dpr~~~v~~~~~lt~s~n~~w~~l~~~y~~Ps~~~~a~~e~GdmfwP~l~~fv~s~ 252 (374)
T COG5540 187 LHYMVAPDKV-DPRSEGVEDPVTLTTSINVTWDGLGNTYQAPSQSAEAQDETGDMFWPRLSRFVGSR 252 (374)
T ss_pred EEEEeccCCC-CchhcCCccceEEEEEEeeeeccccccccCchhhhhchhhhcccccchheeecCce
Confidence 6777776654 77777666554 46999999877765443334 2346899999999999864
Done!