Query 047753
Match_columns 441
No_of_seqs 229 out of 431
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:14:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6w_A VP54, putative glycosyl 100.0 8.8E-42 3E-46 317.7 12.3 185 129-365 4-201 (213)
2 1g9r_A Glycosyl transferase; a 95.7 0.028 9.7E-07 54.7 8.7 151 200-383 94-269 (311)
3 1ll2_A Glycogenin-1; protein-s 94.8 0.03 1E-06 55.7 5.7 87 191-309 84-172 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 94.3 0.042 1.4E-06 53.2 5.2 90 183-309 82-173 (263)
5 3tzt_A Glycosyl transferase fa 94.2 0.19 6.7E-06 48.3 9.7 125 163-309 56-202 (276)
6 2c0n_A A197; thermophil protei 48.4 15 0.00053 34.5 4.2 48 161-213 18-65 (203)
7 2fy7_A Beta-1,4-galactosyltran 38.9 1.1E+02 0.0037 29.3 8.7 78 130-218 64-146 (287)
8 3g1w_A Sugar ABC transporter; 22.9 1.9E+02 0.0064 26.1 7.0 36 130-173 4-39 (305)
9 3uug_A Multiple sugar-binding 22.8 1.9E+02 0.0066 26.4 7.2 67 129-218 2-68 (330)
10 2lju_A Putative oxidoreductase 21.8 65 0.0022 27.4 3.3 17 158-174 70-86 (108)
No 1
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*
Probab=100.00 E-value=8.8e-42 Score=317.66 Aligned_cols=185 Identities=24% Similarity=0.474 Sum_probs=149.2
Q ss_pred CCCcEEEEEccCCCCCCCCCchHHHHHHHHHHHHHHHHhCCcEEEecccc-Cc-cccCccchHHHHHHHHhcCCCccEEE
Q 047753 129 NKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRIHGIEIFYNMALL-DA-EMAGFWAKLPLIRKLLLSHPEVEFLW 206 (441)
Q Consensus 129 ~~prIvIVT~sd~~~c~~~~gd~yl~ksikNk~dYAr~HGY~~~~n~~~l-d~-~~~~~WaKip~LR~aM~a~P~aEWvw 206 (441)
.+|||+||||++|++| +|++++++||++||++|||+++|+...+ +. ++.+.|.|.++||++|.+||++||||
T Consensus 4 ~~p~IllvtGs~p~ew------~yl~ksiKNK~DYArrHGYelfy~d~~l~k~~e~a~eW~ksW~IR~AM~khPeAEWfW 77 (213)
T 2p6w_A 4 TTPCITILSGHFPKET------IYARKTKELVEEYCSIHGYNFYYEESEPLETEEHALHFRRSWIIQQAAEKFPSTEWFL 77 (213)
T ss_dssp --CCEEEEEECSCTTC------HHHHHHHHHHHHHHHHHTCEEEEECSCCSCCSHHHHHHTHHHHHHHHHHHCTTCSEEE
T ss_pred CCceEEEEeCCCCCCc------HHHHHHHHHHHHHHHHcCCeEEEeecccccchhhcccchhhHHHHHHHHHCCCceEEE
Confidence 4799999999999987 8999999999999999999999975544 33 37788999999999999999999999
Q ss_pred EEeCCcceeccCCCCCcccc---CCCCeeecCcccccccCCCCcccccccce-------eeccHHHHHHHHHhccCCCCC
Q 047753 207 WMDSDAMFTDMAFEVPWERY---KDHNLVMHGWKEMVYDEKNWIGLNTGSFL-------LRNCQWALDLLDAWAPMGPKG 276 (441)
Q Consensus 207 WLDsDAlImN~~~~Lple~~---~d~nlVI~g~~dlIltq~dw~GLNtGsFL-------IRNs~WS~~fLd~Wa~m~P~~ 276 (441)
|||+||+||||++++|++++ +++|+|+|||.+.++++ .|||||||| |||||||++|||+|++| |
T Consensus 78 WLDsDAlIMDmnf~lPLe~yldl~~~NlvvHGw~e~~~~~---~~lNtGvfL~~~~~~~irncqWSld~~~~w~~~-~-- 151 (213)
T 2p6w_A 78 WLDSDVYVNPKNKNKPITSFIDLSDPNILYHTFHEAPWGS---YPINTGVKFVHKDALEIEKIVWSLRNEAPWNTF-P-- 151 (213)
T ss_dssp EECTTEEECGGGTTSCGGGTCCCCCTTCCEEEECCTTTSS---SSCCTTEEEEEGGGHHHHHHHHHTTTSTTTTST-T--
T ss_pred EecCCceeecCCCCCcHHHccccccCceeecccccccccc---ccccceeeeecccchhhhhceeehhhhhcccCC-C--
Confidence 99999999999999999998 99999999998887765 499999999 99999999999999987 3
Q ss_pred ccccccchhhhhhhcCCCCCCCCchHH-HHHHHHhCcccccceeEEecchhcccchhhhhhhhhhhhhccCCCCCCCCcC
Q 047753 277 KIRDDAGKILTRELKGRPVFEADDQSA-MVYLLITQRDKWGEKVYLESAYYLHGYWGILVDRYEEMIENYHPGLGDHRWP 355 (441)
Q Consensus 277 pv~~~~g~~l~~~~~~~~~~e~~DQsA-L~~LL~~~~~~w~~kv~l~~~y~~ngYw~~iv~~ye~~~~~y~~g~GD~r~p 355 (441)
.||.. .+|+.-.-+ .+..+-..|.+|+. |..|.+... | .
T Consensus 152 ----------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~-------~---~ 191 (213)
T 2p6w_A 152 ----------------------YEQKTVYEYVFPRIP----GRYIVHDPYTLNCI----VKAYPEHVK-------D---A 191 (213)
T ss_dssp ----------------------THHHHHHHTHHHHST----TSEEEECCTTTSEE----TTTCTTTGG-------G---C
T ss_pred ----------------------cccceeeeeeccCCC----cceEecCcceeeee----hhhchhhhh-------h---h
Confidence 24443 455554333 34445567888764 333332211 1 2
Q ss_pred eEEEccCCcc
Q 047753 356 LVTHFVGCKP 365 (441)
Q Consensus 356 FVvHFaGC~~ 365 (441)
+.||++|..-
T Consensus 192 ~~~~~~~~~~ 201 (213)
T 2p6w_A 192 LFVHMCGTSR 201 (213)
T ss_dssp SEEECTTCCH
T ss_pred hhhhhccCcc
Confidence 8899988763
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=95.73 E-value=0.028 Score=54.72 Aligned_cols=151 Identities=15% Similarity=0.145 Sum_probs=73.7
Q ss_pred CCccEEEEEeCCcceeccCCCCCccccCCCCee-e-cCcc------ccccc-CCCCcccccccceeeccHHH-----HHH
Q 047753 200 PEVEFLWWMDSDAMFTDMAFEVPWERYKDHNLV-M-HGWK------EMVYD-EKNWIGLNTGSFLLRNCQWA-----LDL 265 (441)
Q Consensus 200 P~aEWvwWLDsDAlImN~~~~Lple~~~d~nlV-I-~g~~------dlIlt-q~dw~GLNtGsFLIRNs~WS-----~~f 265 (441)
|+++.|.+||+|.+|...=-+|=...+.+..+. + +.+. ...+. ...-.++|+|++++..+.|- ..+
T Consensus 94 ~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~yfNsGv~linl~~~r~~~~~~~~ 173 (311)
T 1g9r_A 94 ADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMS 173 (311)
T ss_dssp CSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEEEEEEEECHHHHTTSCHHHHH
T ss_pred hhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhcCCCCCCceEeeeeeeeeHHHHHhcchHHHH
Confidence 889999999999999875111100011222221 1 1000 00011 11224899999999987763 344
Q ss_pred HHHhccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHHHHhCcccccceeEEecchhcccchhhhhhhhhhhhhcc
Q 047753 266 LDAWAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYLLITQRDKWGEKVYLESAYYLHGYWGILVDRYEEMIENY 345 (441)
Q Consensus 266 Ld~Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~~~~~~w~~kv~l~~~y~~ngYw~~iv~~ye~~~~~y 345 (441)
++..... ...+...||+.|..++. .++...+..| ......+... ..+
T Consensus 174 ~~~~~~~--------------------~~~~~~~DQd~lN~~f~-------~~~~~Lp~~w-----N~~~~~~~~~-~~~ 220 (311)
T 1g9r_A 174 SEWVEQY--------------------KDVMQYQDQDILNGLFK-------GGVCYANSRF-----NFMPTNYAFM-ANW 220 (311)
T ss_dssp HHHHHHH--------------------TTTCSSHHHHHHHHHHT-------TSEEEECGGG-----SBCHHHHHTC-C--
T ss_pred HHHHHhc--------------------cCcCccCCcCHHHHHHc-------CCEEEcChhh-----ccCcchhhHH-hhh
Confidence 4332210 11234689999987764 2233344321 1111111000 001
Q ss_pred CCCC----------CCCCcCeEEEccC-CccCCCCCCCcHHHHHHHhHh
Q 047753 346 HPGL----------GDHRWPLVTHFVG-CKPCGKFGDYPVERCLKQMDR 383 (441)
Q Consensus 346 ~~g~----------GD~r~pFVvHFaG-C~~cg~~~~y~~~~C~~~m~r 383 (441)
+.+. ....-+-|+||+| .||......++...-++.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~~~~~~ 269 (311)
T 1g9r_A 221 FASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAG 269 (311)
T ss_dssp --CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTHHHHHHHH
T ss_pred cccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccHHHHHHHHH
Confidence 1000 0012357999999 678755555665566655554
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=94.82 E-value=0.03 Score=55.71 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=49.6
Q ss_pred HHHHHHhcCCCccEEEEEeCCcceeccCCCCCccccCCCCeeecCcccccccCCCC-cccccccceeeccHHH-HHHHHH
Q 047753 191 LIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKDHNLVMHGWKEMVYDEKNW-IGLNTGSFLLRNCQWA-LDLLDA 268 (441)
Q Consensus 191 ~LR~aM~a~P~aEWvwWLDsDAlImN~~~~Lple~~~d~nlVI~g~~dlIltq~dw-~GLNtGsFLIRNs~WS-~~fLd~ 268 (441)
+.|-.+-..+++|.|+|||+|++|...=-+| -... .+. .-.|. .| ..+|+|+|+++.+.-. ..+++.
T Consensus 84 ~~Kl~i~~l~~ydrvlYLDaD~lv~~di~eL--f~~~--~~a--Av~d~-----~~~~~fNsGvmlin~~~~~~~~l~~~ 152 (333)
T 1ll2_A 84 LTKLHCWSLTQYSKCVFMDADTLVLANIDDL--FERE--ELS--AAPDP-----GWPDCFNSGVFVYQPSVETYNQLLHV 152 (333)
T ss_dssp HHHGGGGGCTTCSEEEEECTTEEECSCCGGG--GGSC--SSE--EEECS-----SSTTSEEEEEEEECCCHHHHHHHHHH
T ss_pred HHHHHHhHhcCCCeEEEEeCCEEeccCHHHH--hCCC--cee--EEecC-----CCCcceeeeEEEEeCCHHHHHHHHHH
Confidence 3333333457899999999999998842111 1111 111 00111 12 4899999999876322 223332
Q ss_pred hccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHHHH
Q 047753 269 WAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYLLI 309 (441)
Q Consensus 269 Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~ 309 (441)
... ...+...||+.|..++.
T Consensus 153 ~~~---------------------~~~~~~~DQ~~LN~~f~ 172 (333)
T 1ll2_A 153 ASE---------------------QGSFDGGDQGLLNTFFN 172 (333)
T ss_dssp HHH---------------------TCCTTSSHHHHHHHHTT
T ss_pred HHh---------------------cCCCCCCCHHHHHHHHH
Confidence 221 12334589999999885
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=94.29 E-value=0.042 Score=53.19 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=52.4
Q ss_pred cCccchHHHHHHHHhcCCCccEEEEEeCCcceeccCCCCCccccCCCCeeecCcccccccCCCC-cccccccceeeccHH
Q 047753 183 AGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKDHNLVMHGWKEMVYDEKNW-IGLNTGSFLLRNCQW 261 (441)
Q Consensus 183 ~~~WaKip~LR~aM~a~P~aEWvwWLDsDAlImN~~~~Lple~~~d~nlVI~g~~dlIltq~dw-~GLNtGsFLIRNs~W 261 (441)
...|.|+.+-+ ..++|=|.|||+|+++...=-+| -... .+. .-.|. .| ..+|+|+|+|..+..
T Consensus 82 ~~~~~kl~~~~-----l~~~~~vlylD~D~~v~~~~~~L--f~~~--~~a--A~~d~-----~~~~~fNsGv~li~p~~~ 145 (263)
T 3u2u_A 82 GVTLTKLHCWS-----LTQYSKCVFMDADTLVLANIDDL--FDRE--ELS--AAPDP-----GWPDCFNSGVFVYQPSVE 145 (263)
T ss_dssp GGGGGGGGGGG-----CTTCSEEEEECTTEEECSCCGGG--GGSC--SSE--EEECT-----TSTTSEEEEEEEECCCHH
T ss_pred hHHhHHHHhcc-----ccCcceEEEEcCCEeeccCHHHH--hCCC--cce--EeccC-----CCCccccCeEEEEcccHH
Confidence 45678865554 23578999999999998842111 1111 111 00111 12 479999999998742
Q ss_pred HH-HHHHHhccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHHHH
Q 047753 262 AL-DLLDAWAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYLLI 309 (441)
Q Consensus 262 S~-~fLd~Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~ 309 (441)
.. .+++... ....+...||+.|..++.
T Consensus 146 ~~~~l~~~~~---------------------~~~~~~~~DQd~LN~~f~ 173 (263)
T 3u2u_A 146 TYNQLLHLAS---------------------EQGSFDGGDQGILNTFFS 173 (263)
T ss_dssp HHHHHHHHHH---------------------HHCCTTSSHHHHHHHHTT
T ss_pred HHHHHHHHHH---------------------hcCCCCcccHHHHHHHhc
Confidence 22 2222221 112345689999999995
No 5
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=94.20 E-value=0.19 Score=48.29 Aligned_cols=125 Identities=13% Similarity=0.110 Sum_probs=56.2
Q ss_pred HHHHhCCcEEE-ecc--ccCc-cccCccchHHHHHHHHhc-CC-CccEEEEEeCCcceeccCCCC-CccccCCCCee--e
Q 047753 163 YCRIHGIEIFY-NMA--LLDA-EMAGFWAKLPLIRKLLLS-HP-EVEFLWWMDSDAMFTDMAFEV-PWERYKDHNLV--M 233 (441)
Q Consensus 163 YAr~HGY~~~~-n~~--~ld~-~~~~~WaKip~LR~aM~a-~P-~aEWvwWLDsDAlImN~~~~L-ple~~~d~nlV--I 233 (441)
.++..|..+.+ ... .+.. .....|+...+.|=.+-. .| +++.++|||+|+++...=-+| .. .+.+..+- -
T Consensus 56 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~-dl~~~~~aav~ 134 (276)
T 3tzt_A 56 DLKKFSYTLYPIRATDDLFSFAKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRT-DISDYILAAAS 134 (276)
T ss_dssp HHHTTTCEEEEEECC-------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTC-CCTTSSEEEEE
T ss_pred HHHHcCCEEEEEEeCHHHHhcCccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhc-CCCCCeEEEEE
Confidence 45556776653 221 1211 112346665555554433 47 699999999999998631111 00 12222221 0
Q ss_pred c-C-------cccccccCCCCcccccccceeeccHHHH-----HHHHHhccCCCCCccccccchhhhhhhcCCCCCCCCc
Q 047753 234 H-G-------WKEMVYDEKNWIGLNTGSFLLRNCQWAL-----DLLDAWAPMGPKGKIRDDAGKILTRELKGRPVFEADD 300 (441)
Q Consensus 234 ~-g-------~~dlIltq~dw~GLNtGsFLIRNs~WS~-----~fLd~Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~D 300 (441)
+ + ....-+...+ .++|+|++++-...|-. .+++.... ........|
T Consensus 135 d~~~~~~~~~~~~~~l~~~~-~yfNsGV~linl~~~R~~~~~~~~~~~~~~--------------------~~~~~~~~D 193 (276)
T 3tzt_A 135 HTGKTDMANNVNRIRLGTDT-DYYNSGLLLINLKRAREEIDPDEIFSFVED--------------------NHMNLLLPD 193 (276)
T ss_dssp C---------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHH--------------------C--------
T ss_pred ecccchHHHHHHHhcCCCCC-CeEEeeEEEEEHHHHHhhhHHHHHHHHHHh--------------------ccccccCCC
Confidence 0 0 0011122212 68999999998887754 33332221 111234589
Q ss_pred hHHHHHHHH
Q 047753 301 QSAMVYLLI 309 (441)
Q Consensus 301 QsAL~~LL~ 309 (441)
|++|-.++.
T Consensus 194 Qd~LN~~f~ 202 (276)
T 3tzt_A 194 QDILNAMYG 202 (276)
T ss_dssp CHHHHHHHG
T ss_pred hhHHHHHHh
Confidence 999987774
No 6
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=48.44 E-value=15 Score=34.48 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=28.2
Q ss_pred HHHHHHhCCcEEEeccccCccccCccchHHHHHHHHhcCCCccEEEEEeCCcc
Q 047753 161 IDYCRIHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAM 213 (441)
Q Consensus 161 ~dYAr~HGY~~~~n~~~ld~~~~~~WaKip~LR~aM~a~P~aEWvwWLDsDAl 213 (441)
+.-|.++|+++..... ++-.+..=++ ++-. ..+.+++++++|||+|.+
T Consensus 18 ~~~l~~~gi~~~l~~~--~SlI~raRN~--lv~~-Fl~~~~~dhllfIDAD~~ 65 (203)
T 2c0n_A 18 IDFLVKNDIEYVILSR--RNHVAVQREI--ALDM-FLEMKDYDTLAFLDEDVV 65 (203)
T ss_dssp HHHHHHTTCCEEEECC--CSCHHHHHHH--HHHH-HHHCTTCCEEEEECTTEE
T ss_pred HHHHHhCCCeEEEEcc--ccchHHHHHH--HHHH-HHhcCCCCEEEEEeCCCC
Confidence 4567889999986333 2221111111 1111 234578999999999944
No 7
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=38.90 E-value=1.1e+02 Score=29.27 Aligned_cols=78 Identities=8% Similarity=0.044 Sum_probs=43.8
Q ss_pred CCcEEEEEccCCCCCCCCCchHHHHHHHHHHHHHHHHh--CCcEEEeccccCccccCccchHHHHHHHHh---cCCCccE
Q 047753 130 KPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRIH--GIEIFYNMALLDAEMAGFWAKLPLIRKLLL---SHPEVEF 204 (441)
Q Consensus 130 ~prIvIVT~sd~~~c~~~~gd~yl~ksikNk~dYAr~H--GY~~~~n~~~ld~~~~~~WaKip~LR~aM~---a~P~aEW 204 (441)
.|+|.||...... ..+|.+++..-..+.+.. .|++++ .|......+++-.++-..+. +.-..||
T Consensus 64 ~~~VSIIIP~yN~-------~~~L~~~L~sl~~~l~q~~~~~EIiV----Vdds~d~~f~~a~a~N~G~~~al~~A~gd~ 132 (287)
T 2fy7_A 64 PHKVAIIIPFRNR-------QEHLKYWLYYLHPVLQRQQLDYGIYV----INQAGDTIFNRAKLLNVGFQEALKDYDYTC 132 (287)
T ss_dssp SCEEEEEEEESSC-------HHHHHHHHHHHHHHHHHTTCEEEEEE----EEECSSSCCCHHHHHHHHHHHHHHHSCCCE
T ss_pred CCcEEEEEeeCCC-------HHHHHHHHHHHHHHHHHhcCCceEEE----EEeCCCCccchhhhhhhHHHHHHHhCCCCE
Confidence 4678777766542 345666666554443443 344443 11122234455444444330 2246799
Q ss_pred EEEEeCCcceeccC
Q 047753 205 LWWMDSDAMFTDMA 218 (441)
Q Consensus 205 vwWLDsDAlImN~~ 218 (441)
|+++|+|.++.+-.
T Consensus 133 i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 133 FVFSDVDLIPMNDH 146 (287)
T ss_dssp EEEECTTEEESBTT
T ss_pred EEEECCCcccCCCc
Confidence 99999999887653
No 8
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=22.85 E-value=1.9e+02 Score=26.15 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=26.9
Q ss_pred CCcEEEEEccCCCCCCCCCchHHHHHHHHHHHHHHHHhCCcEEE
Q 047753 130 KPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRIHGIEIFY 173 (441)
Q Consensus 130 ~prIvIVT~sd~~~c~~~~gd~yl~ksikNk~dYAr~HGY~~~~ 173 (441)
+.+|++|+..... .|....++--..+|+.+||.+.+
T Consensus 4 ~~~I~~i~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~ 39 (305)
T 3g1w_A 4 NETYMMITFQSGM--------DYWKRCLKGFEDAAQALNVTVEY 39 (305)
T ss_dssp -CEEEEEESSTTS--------THHHHHHHHHHHHHHHHTCEEEE
T ss_pred CceEEEEEccCCC--------hHHHHHHHHHHHHHHHcCCEEEE
Confidence 4578888865432 24567778888999999999986
No 9
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=22.79 E-value=1.9e+02 Score=26.37 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=40.5
Q ss_pred CCCcEEEEEccCCCCCCCCCchHHHHHHHHHHHHHHHHhCCcEEEeccccCccccCccchHHHHHHHHhcCCCccEEEEE
Q 047753 129 NKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRIHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWM 208 (441)
Q Consensus 129 ~~prIvIVT~sd~~~c~~~~gd~yl~ksikNk~dYAr~HGY~~~~n~~~ld~~~~~~WaKip~LR~aM~a~P~aEWvwWL 208 (441)
.+.+|++|...... .|....++--..+|+.+||.+.+.....++. .....++.++...
T Consensus 2 ~~~~Igvi~~~~~~--------~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~-----~~~~~i~~~~~~~--------- 59 (330)
T 3uug_A 2 DKGSVGIAMPTKSS--------ARWIDDGNNIVKQLQEAGYKTDLQYADDDIP-----NQLSQIENMVTKG--------- 59 (330)
T ss_dssp CCCEEEEEECCSSS--------THHHHHHHHHHHHHHHTTCEEEEEECTTCHH-----HHHHHHHHHHHHT---------
T ss_pred CCcEEEEEeCCCcc--------hHHHHHHHHHHHHHHHcCCEEEEeeCCCCHH-----HHHHHHHHHHHcC---------
Confidence 34578888765432 2446777888899999999987633222221 1234566666543
Q ss_pred eCCcceeccC
Q 047753 209 DSDAMFTDMA 218 (441)
Q Consensus 209 DsDAlImN~~ 218 (441)
.|++|+.+.
T Consensus 60 -vdgiIi~~~ 68 (330)
T 3uug_A 60 -VKVLVIASI 68 (330)
T ss_dssp -CSEEEECCS
T ss_pred -CCEEEEEcC
Confidence 466666553
No 10
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=21.83 E-value=65 Score=27.36 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=14.1
Q ss_pred HHHHHHHHHhCCcEEEe
Q 047753 158 KNKIDYCRIHGIEIFYN 174 (441)
Q Consensus 158 kNk~dYAr~HGY~~~~n 174 (441)
+-=+.||++||+++++.
T Consensus 70 E~AiayAek~G~~y~V~ 86 (108)
T 2lju_A 70 ELAIAYAVAHKIDYTVL 86 (108)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEe
Confidence 44578999999999974
Done!