Query 047753
Match_columns 441
No_of_seqs 229 out of 431
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 04:14:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047753.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047753hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ga8a_ c.68.1.4 (A:) Galactos 97.2 0.00089 6.5E-08 61.4 10.7 56 162-217 50-111 (282)
2 d1ll2a_ c.68.1.14 (A:) Glycoge 96.6 0.0013 9.5E-08 59.6 6.7 95 185-309 78-172 (263)
3 d1o7qa_ c.68.1.9 (A:) alpha-1, 40.8 26 0.0019 32.2 7.0 79 130-217 45-152 (287)
4 d1omza_ c.68.1.15 (A:) Alpha-1 23.7 15 0.0011 29.0 1.9 19 199-217 79-97 (265)
5 d1tjya_ c.93.1.1 (A:) AI-2 rec 23.6 74 0.0054 26.4 6.6 68 129-219 2-70 (316)
6 d2fzva1 c.23.5.4 (A:1-233) Put 22.9 1.2E+02 0.0091 26.0 8.2 58 109-173 13-70 (233)
7 d1lzia_ c.68.1.9 (A:) Glycosyl 17.3 20 0.0015 32.9 1.4 78 130-217 51-157 (283)
8 d1zl0a2 c.23.16.7 (A:3-169) LD 14.3 3E+02 0.022 22.4 9.2 68 130-208 13-83 (167)
9 d1r57a_ d.108.1.1 (A:) Hypothe 12.7 1.2E+02 0.0091 22.4 4.8 40 149-202 49-88 (102)
10 d2vk9a1 c.68.1.22 (A:2-541) Al 10.8 73 0.0053 31.5 3.4 28 189-216 113-140 (540)
No 1
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=97.19 E-value=0.00089 Score=61.41 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=33.6
Q ss_pred HHHHHhCCcEEE-ec--cccC--ccccCccchHHHHHHHHhc-CCCccEEEEEeCCcceecc
Q 047753 162 DYCRIHGIEIFY-NM--ALLD--AEMAGFWAKLPLIRKLLLS-HPEVEFLWWMDSDAMFTDM 217 (441)
Q Consensus 162 dYAr~HGY~~~~-n~--~~ld--~~~~~~WaKip~LR~aM~a-~P~aEWvwWLDsDAlImN~ 217 (441)
.+...++..+.+ .. ..+. +.....|++..+.|=.+-. .|+++-+.|||+|++|...
T Consensus 50 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~d 111 (282)
T d1ga8a_ 50 ANLRGGGGNIRFIDVNPEDFAGFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDS 111 (282)
T ss_dssp HTSGGGTTTEEEEECCGGGGTTSCCCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSC
T ss_pred HHHHHcCCeEEEEECCchHhccccccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecc
Confidence 344567777764 22 1121 2233445555544433322 4889999999999999874
No 2
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=96.65 E-value=0.0013 Score=59.63 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=57.2
Q ss_pred ccchHHHHHHHHhcCCCccEEEEEeCCcceeccCCCCCccccCCCCeeecCcccccccCCCCcccccccceeeccHHHHH
Q 047753 185 FWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKDHNLVMHGWKEMVYDEKNWIGLNTGSFLLRNCQWALD 264 (441)
Q Consensus 185 ~WaKip~LR~aM~a~P~aEWvwWLDsDAlImN~~~~Lple~~~d~nlVI~g~~dlIltq~dw~GLNtGsFLIRNs~WS~~ 264 (441)
.|.+..+.|=.+-..++.|=|.|||+|++|...=-+ .+. .+.. ..+........+|+|++++..+.|...
T Consensus 78 ~~~~~ty~Kl~i~~l~~ydkvlYLDaD~lv~~~id~----Lf~-~~~~-----~a~~~~~~~~~~nsGv~l~~p~~~~~~ 147 (263)
T d1ll2a_ 78 PELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDD----LFE-REEL-----SAAPDPGWPDCFNSGVFVYQPSVETYN 147 (263)
T ss_dssp GGGHHHHHHGGGGGCTTCSEEEEECTTEEECSCCGG----GGG-SCSS-----EEEECSSSTTSEEEEEEEECCCHHHHH
T ss_pred ccchhhhHHHHHhhhcccceEEEeCCCEEEecCHHH----Hhc-CCcc-----ceeccCCCcccccCCcEEECccHHHHH
Confidence 344444444444445788999999999999984111 111 1110 011112224689999999999999877
Q ss_pred HHHHhccCCCCCccccccchhhhhhhcCCCCCCCCchHHHHHHHH
Q 047753 265 LLDAWAPMGPKGKIRDDAGKILTRELKGRPVFEADDQSAMVYLLI 309 (441)
Q Consensus 265 fLd~Wa~m~P~~pv~~~~g~~l~~~~~~~~~~e~~DQsAL~~LL~ 309 (441)
-+...... .......||..+...+.
T Consensus 148 ~i~~~~~~--------------------~~~~~~~dq~~ln~~~~ 172 (263)
T d1ll2a_ 148 QLLHVASE--------------------QGSFDGGDQGLLNTFFN 172 (263)
T ss_dssp HHHHHHHH--------------------TCCTTSSHHHHHHHHTT
T ss_pred HHHHHHHh--------------------hCCCChhhhhHHHHHHH
Confidence 66554311 11223579999887764
No 3
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=40.77 E-value=26 Score=32.16 Aligned_cols=79 Identities=23% Similarity=0.406 Sum_probs=49.4
Q ss_pred CCcEEEEEccCCCCCCCCCchHHHHHHHHHHHHHHHHh---CCcEEE-e-cc---c-----cCc---------cccCccc
Q 047753 130 KPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRIH---GIEIFY-N-MA---L-----LDA---------EMAGFWA 187 (441)
Q Consensus 130 ~prIvIVT~sd~~~c~~~~gd~yl~ksikNk~dYAr~H---GY~~~~-n-~~---~-----ld~---------~~~~~Wa 187 (441)
+-.|+|++...++ |+...++.-..=|++| |+++.| - +. . +.+ ....-|.
T Consensus 45 ~~tIgl~vfAtgk---------Y~~~Fl~~FleSaEk~Fm~g~~v~yyVFTD~~~~~P~i~l~~~r~~~v~~v~~~~~Wp 115 (287)
T d1o7qa_ 45 KITVGLTVFAVGR---------YIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSRMPLIELGPLRSFKVFKIKPEKRWQ 115 (287)
T ss_dssp TCCEEEEEEECTT---------HHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGGGCCCCCCCTTEEEEEEECCCCSSHH
T ss_pred CceEEEEEEEeCh---------hHHHHHHHHHHHHHHhcCCCCeEEEEEEECCcccCCccccCCccceEEEEccccCCCc
Confidence 4478988887764 3334555555667777 777764 1 11 1 111 1123587
Q ss_pred hHHHHHHHHh-----c--CCCccEEEEEeCCcceecc
Q 047753 188 KLPLIRKLLL-----S--HPEVEFLWWMDSDAMFTDM 217 (441)
Q Consensus 188 Kip~LR~aM~-----a--~P~aEWvwWLDsDAlImN~ 217 (441)
-+-+.|--|. + ..+++|+++||+|+.|.++
T Consensus 116 ~iTL~Rm~~i~~~i~~~~~~e~Dylf~~DaDm~f~~~ 152 (287)
T d1o7qa_ 116 DISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDK 152 (287)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSC
T ss_pred hhHHHHHHHHHHHHHHhhhccCCeEEEEeCCceEecc
Confidence 7766664332 2 2588999999999999995
No 4
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.68 E-value=15 Score=29.03 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=15.2
Q ss_pred CCCccEEEEEeCCcceecc
Q 047753 199 HPEVEFLWWMDSDAMFTDM 217 (441)
Q Consensus 199 ~P~aEWvwWLDsDAlImN~ 217 (441)
.-..|||++||+|.++..-
T Consensus 79 ~a~ge~i~~lD~D~~~~~~ 97 (265)
T d1omza_ 79 EVETNAVLMVDDDTLISAQ 97 (265)
T ss_dssp TCCSSEEEEECTTEEECHH
T ss_pred hCCcCEEEEeCcccCCCHH
Confidence 3467999999999887543
No 5
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=23.63 E-value=74 Score=26.37 Aligned_cols=68 Identities=10% Similarity=0.162 Sum_probs=43.7
Q ss_pred CCCcEEEEEccCCCCCCCCCchHHHHHHHHHHHHHHHHhCCcEEEe-ccccCccccCccchHHHHHHHHhcCCCccEEEE
Q 047753 129 NKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRIHGIEIFYN-MALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWW 207 (441)
Q Consensus 129 ~~prIvIVT~sd~~~c~~~~gd~yl~ksikNk~dYAr~HGY~~~~n-~~~ld~~~~~~WaKip~LR~aM~a~P~aEWvwW 207 (441)
...+|++|...-. ..|.....+--++.|+.+||++.+. ....| .-.-...|+.++.+-
T Consensus 2 ~~~kI~~i~~~~~--------npf~~~~~~g~~~~a~~~G~~v~~~~~~~~d-----~~~q~~~i~~~i~~~-------- 60 (316)
T d1tjya_ 2 SAERIAFIPKLVG--------VGFFTSGGNGAQEAGKALGIDVTYDGPTEPS-----VSGQVQLVNNFVNQG-------- 60 (316)
T ss_dssp CCCEEEEECSSSS--------SHHHHHHHHHHHHHHHHHTCEEEECCCSSCC-----HHHHHHHHHHHHHTT--------
T ss_pred CCCEEEEEeCCCC--------CHHHHHHHHHHHHHHHHcCCEEEEEECCCCC-----HHHHHHHHHHHHhcC--------
Confidence 3468998865443 3456778888889999999998651 12111 122356778777653
Q ss_pred EeCCcceeccCC
Q 047753 208 MDSDAMFTDMAF 219 (441)
Q Consensus 208 LDsDAlImN~~~ 219 (441)
.|+||+.+.-
T Consensus 61 --~dgIIi~~~~ 70 (316)
T d1tjya_ 61 --YDAIIVSAVS 70 (316)
T ss_dssp --CSEEEECCSS
T ss_pred --CCeeeecccc
Confidence 6777776643
No 6
>d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]}
Probab=22.91 E-value=1.2e+02 Score=25.96 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=39.9
Q ss_pred CCCCCcccccCCCCCCCCCCCCCcEEEEEccCCCCCCCCCchHHHHHHHHHHHHHHHHhCCcEEE
Q 047753 109 NKHDPSGSKRNPTLPNFLRPNKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRIHGIEIFY 173 (441)
Q Consensus 109 ~~l~~~wl~~hp~~~~~~~~~~prIvIVT~sd~~~c~~~~gd~yl~ksikNk~dYAr~HGY~~~~ 173 (441)
|.|-+.|+..-|-+........+||++|.||.-.. + +-.+..+--.++++..|.++.+
T Consensus 13 ~~~~~~~~~~~p~~~~~~~~~~~KIl~I~GS~R~~-----s--~s~~la~~~~~~l~~~G~ev~~ 70 (233)
T d2fzva1 13 PALDKSFAIERPALGLAPDAPPVRILLLYGSLRAR-----S--FSRLAVEEAARLLQFFGAETRI 70 (233)
T ss_dssp TTSCTTTCCSCTTTTTSCCCSCCEEEEEESCCSSS-----C--HHHHHHHHHHHHHHHTTCEEEE
T ss_pred CccChhhccCCccccCCCCCCCCeEEEEeCCCCCC-----C--HHHHHHHHHHHHhhhcCeEEEE
Confidence 46778888888877754445567999999997542 2 1234444445688889998865
No 7
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.31 E-value=20 Score=32.90 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=37.3
Q ss_pred CCcEEEEEccCCCCCCCCCchHHHHHHHHHHHHHHHHh---CCcEEE--ecc---c-----cCcc---------ccCccc
Q 047753 130 KPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRIH---GIEIFY--NMA---L-----LDAE---------MAGFWA 187 (441)
Q Consensus 130 ~prIvIVT~sd~~~c~~~~gd~yl~ksikNk~dYAr~H---GY~~~~--n~~---~-----ld~~---------~~~~Wa 187 (441)
+-.|+|++...++ +- .|+.+.+++ |++| ||++.| =+. . +.+. ...-|.
T Consensus 51 ~~tIgl~vfATGk-----Y~-~Fl~~f~eS----aek~Fmpg~~v~yyvFTD~~~~vP~i~l~~~~~v~v~~i~~~~~Wp 120 (283)
T d1lzia_ 51 NTTIGLTVFAIKK-----YV-AFLKLFLET----AEKHFMVGHRVHYYVFTDQPAAVPRVTLGTGRQLSVLEVRAYKRWQ 120 (283)
T ss_dssp TCEEEEEEEECGG-----GG-GGHHHHHHH----HHHHBSTTSEEEEEEEESCGGGSCCCCCCTTEEEEEEECC------
T ss_pred CceEEEEEEEeCh-----HH-HHHHHHHHH----HHHhcCCCCeeEEEEEECCCccCCccccccCCceEEEeccCCCCCc
Confidence 4578888876654 33 244444444 5555 777653 111 1 1111 134586
Q ss_pred hHHHHHHHHhc-------CCCccEEEEEeCCcceecc
Q 047753 188 KLPLIRKLLLS-------HPEVEFLWWMDSDAMFTDM 217 (441)
Q Consensus 188 Kip~LR~aM~a-------~P~aEWvwWLDsDAlImN~ 217 (441)
-+-+.|--+.. .-+++|+++||+|+.|.+.
T Consensus 121 ~iTL~R~~~i~k~i~~~~~~e~DyLf~~DaDm~f~~~ 157 (283)
T d1lzia_ 121 DVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDH 157 (283)
T ss_dssp -------------CHHHHHHHCSEEEEECSSEEECSC
T ss_pred hHHHHHHHHHHHHHHHHhhhcCCEEEEeecceEEecc
Confidence 66555544332 2378999999999999885
No 8
>d1zl0a2 c.23.16.7 (A:3-169) LD-carboxypeptidase A, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=14.33 E-value=3e+02 Score=22.36 Aligned_cols=68 Identities=16% Similarity=0.354 Sum_probs=38.8
Q ss_pred CCcEEEEEccCCCCCCCCCchHHHHHHHHHHHHHHHHhCCcEEEeccccCcc--ccC-ccchHHHHHHHHhcCCCccEEE
Q 047753 130 KPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRIHGIEIFYNMALLDAE--MAG-FWAKLPLIRKLLLSHPEVEFLW 206 (441)
Q Consensus 130 ~prIvIVT~sd~~~c~~~~gd~yl~ksikNk~dYAr~HGY~~~~n~~~ld~~--~~~-~WaKip~LR~aM~a~P~aEWvw 206 (441)
..+|+||.-+.+-. ...++--+.+.+.+||.+.+....+... ..+ --.+..-|.+++ +.|+++-||
T Consensus 13 Gd~I~iiAPS~~~~----------~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~-~dp~i~aI~ 81 (167)
T d1zl0a2 13 DGRVALIAPASAIA----------TDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAF-DMPDITAVW 81 (167)
T ss_dssp CSEEEEECCSBCCC----------HHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHH-HSTTEEEEE
T ss_pred CCEEEEEeCCCcCC----------HHHHHHHHHHHHHCCCEEEECcccccccCcccCCHHHHHHHHHHhc-cCcCCCEEE
Confidence 45899999887632 2345666777888999998743333211 111 123344454444 346655555
Q ss_pred EE
Q 047753 207 WM 208 (441)
Q Consensus 207 WL 208 (441)
.+
T Consensus 82 ~~ 83 (167)
T d1zl0a2 82 CL 83 (167)
T ss_dssp ES
T ss_pred EC
Confidence 43
No 9
>d1r57a_ d.108.1.1 (A:) Hypothetical protein SA2309 {Staphylococcus aureus [TaxId: 1280]}
Probab=12.66 E-value=1.2e+02 Score=22.41 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHHHHHhCCcEEEeccccCccccCccchHHHHHHHHhcCCCc
Q 047753 149 GDHYLLKSIKNKIDYCRIHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEV 202 (441)
Q Consensus 149 gd~yl~ksikNk~dYAr~HGY~~~~n~~~ld~~~~~~WaKip~LR~aM~a~P~a 202 (441)
|..+-.+.++--.+||+..|+.+.- .| ++++..+.+||++
T Consensus 49 G~Gig~~Lv~~~l~~Ar~~g~kvvp---~c-----------~y~~~~~~k~pey 88 (102)
T d1r57a_ 49 GQGVGKKLLKAVVEHARENNLKIIA---SC-----------SFAKHMLEKEDSY 88 (102)
T ss_dssp TTCTHHHHHHHHHHHHHHHTCEEEE---SS-----------HHHHHHHHHCGGG
T ss_pred CccHHHHHHHHHHHHHHHCCCEEEE---ec-----------HhHHHHHHhCccH
Confidence 3334467778889999999999763 22 4778888888865
No 10
>d2vk9a1 c.68.1.22 (A:2-541) Alpha-toxin {Clostridium novyi [TaxId: 1542]}
Probab=10.77 E-value=73 Score=31.51 Aligned_cols=28 Identities=7% Similarity=0.223 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCccEEEEEeCCcceec
Q 047753 189 LPLIRKLLLSHPEVEFLWWMDSDAMFTD 216 (441)
Q Consensus 189 ip~LR~aM~a~P~aEWvwWLDsDAlImN 216 (441)
..+|..-+..+|++++.+|+|++|+..+
T Consensus 113 ~~YIk~wl~ty~dy~~~lW~D~nAflAa 140 (540)
T d2vk9a1 113 LEYYNMWKMFNKDYNIRLFYDKNSLLVN 140 (540)
T ss_dssp HHHHHHHHHHCTTSEEEEEECTTCCCHH
T ss_pred HHHHHHHHHhCCCCeEEEEECchHHHHH
Confidence 5778888888999999999999997665
Done!