Query 047754
Match_columns 330
No_of_seqs 153 out of 486
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:48:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05770 Ins134_P3_kin: Inosit 100.0 9E-84 2E-88 607.7 24.6 300 7-307 5-307 (307)
2 PLN02941 inositol-tetrakisphos 100.0 3.4E-77 7.3E-82 569.6 33.9 312 1-313 13-328 (328)
3 PRK10446 ribosomal protein S6 100.0 1.6E-29 3.5E-34 240.0 27.3 252 26-314 15-295 (300)
4 COG0189 RimK Glutathione synth 100.0 1.4E-29 3E-34 242.2 23.8 246 28-310 21-316 (318)
5 TIGR02144 LysX_arch Lysine bio 100.0 1.4E-28 3E-33 230.2 26.6 243 27-309 13-279 (280)
6 TIGR00768 rimK_fam alpha-L-glu 100.0 2.4E-27 5.2E-32 220.5 25.8 233 25-295 12-262 (277)
7 PF08443 RimK: RimK-like ATP-g 99.9 6E-27 1.3E-31 208.6 17.6 167 94-296 2-176 (190)
8 PRK01372 ddl D-alanine--D-alan 99.9 8.8E-24 1.9E-28 200.3 27.1 251 11-294 6-275 (304)
9 TIGR01380 glut_syn glutathione 99.9 9.5E-24 2.1E-28 201.8 23.6 248 11-306 2-309 (312)
10 PRK05246 glutathione synthetas 99.9 4.2E-23 9.1E-28 197.6 24.2 252 11-309 3-313 (316)
11 PRK12458 glutathione synthetas 99.9 8E-23 1.7E-27 197.5 23.9 246 22-311 9-327 (338)
12 TIGR01205 D_ala_D_alaTIGR D-al 99.9 3.7E-22 8E-27 189.9 26.3 240 26-295 20-291 (315)
13 TIGR03103 trio_acet_GNAT GNAT- 99.9 4E-22 8.7E-27 203.6 26.4 243 24-304 240-539 (547)
14 PRK14571 D-alanyl-alanine synt 99.9 1.6E-21 3.4E-26 185.0 26.0 245 27-310 22-296 (299)
15 PRK14569 D-alanyl-alanine synt 99.9 8.5E-21 1.8E-25 180.1 26.0 230 29-296 27-272 (296)
16 PRK14570 D-alanyl-alanine synt 99.9 3.9E-21 8.4E-26 187.5 23.8 236 54-313 87-350 (364)
17 PRK01966 ddl D-alanyl-alanine 99.9 8.2E-21 1.8E-25 183.0 23.8 239 29-295 27-307 (333)
18 PRK14572 D-alanyl-alanine synt 99.9 2.1E-20 4.7E-25 181.1 24.2 211 70-308 105-344 (347)
19 PRK02471 bifunctional glutamat 99.9 2.8E-20 6E-25 195.7 26.4 236 22-294 430-731 (752)
20 PRK14568 vanB D-alanine--D-lac 99.9 3.5E-20 7.7E-25 179.3 24.5 236 29-295 27-316 (343)
21 PRK14016 cyanophycin synthetas 99.9 3.4E-20 7.4E-25 195.1 23.3 231 27-294 163-452 (727)
22 PF07478 Dala_Dala_lig_C: D-al 99.8 1E-19 2.2E-24 164.0 16.3 166 113-297 5-183 (203)
23 TIGR02068 cya_phycin_syn cyano 99.8 3.2E-19 6.9E-24 191.0 22.7 231 25-294 160-451 (864)
24 TIGR01435 glu_cys_lig_rel glut 99.8 3.1E-18 6.8E-23 178.5 25.2 237 22-294 418-717 (737)
25 TIGR02291 rimK_rel_E_lig alpha 99.8 1E-18 2.2E-23 166.5 18.7 194 83-292 25-273 (317)
26 PRK14573 bifunctional D-alanyl 99.8 4.2E-17 9E-22 174.1 25.8 262 29-312 475-789 (809)
27 COG1181 DdlA D-alanine-D-alani 99.7 2.8E-16 6.2E-21 150.3 22.5 247 27-296 24-293 (317)
28 TIGR01142 purT phosphoribosylg 99.7 4.7E-16 1E-20 151.8 24.1 227 27-296 12-279 (380)
29 TIGR01161 purK phosphoribosyla 99.7 1.4E-15 3.1E-20 147.4 26.2 228 27-294 12-270 (352)
30 PRK06019 phosphoribosylaminoim 99.7 9.8E-16 2.1E-20 149.9 23.4 226 27-294 15-272 (372)
31 PF13535 ATP-grasp_4: ATP-gras 99.7 6.9E-16 1.5E-20 134.4 16.7 164 92-290 1-180 (184)
32 PLN02948 phosphoribosylaminoim 99.7 7.7E-15 1.7E-19 151.0 26.2 243 6-294 19-295 (577)
33 PRK06849 hypothetical protein; 99.7 8.9E-15 1.9E-19 143.7 23.5 220 28-290 19-277 (389)
34 PRK12767 carbamoyl phosphate s 99.7 7.1E-15 1.5E-19 140.4 21.7 167 80-289 95-270 (326)
35 PRK07206 hypothetical protein; 99.7 1.3E-14 2.9E-19 143.3 23.9 230 27-296 15-295 (416)
36 PRK09288 purT phosphoribosylgl 99.7 2E-14 4.3E-19 141.1 23.8 229 26-296 24-292 (395)
37 PRK05294 carB carbamoyl phosph 99.6 2.6E-14 5.6E-19 156.6 24.3 227 25-290 576-842 (1066)
38 TIGR01369 CPSaseII_lrg carbamo 99.6 6.6E-14 1.4E-18 153.1 26.1 224 26-290 577-842 (1050)
39 PRK08462 biotin carboxylase; V 99.6 5.2E-14 1.1E-18 140.6 23.2 226 26-291 16-297 (445)
40 PRK12833 acetyl-CoA carboxylas 99.6 9.3E-14 2E-18 139.9 24.0 174 80-291 102-298 (467)
41 PRK05586 biotin carboxylase; V 99.6 9.6E-14 2.1E-18 139.0 23.4 177 79-292 98-296 (447)
42 PLN02735 carbamoyl-phosphate s 99.6 1.4E-13 3E-18 150.7 24.8 235 24-296 44-326 (1102)
43 PRK13790 phosphoribosylamine-- 99.6 1.8E-13 4E-18 134.3 22.9 234 27-311 17-276 (379)
44 TIGR00514 accC acetyl-CoA carb 99.6 3.3E-13 7.2E-18 135.1 24.4 227 26-292 14-296 (449)
45 PRK07178 pyruvate carboxylase 99.6 3.4E-13 7.5E-18 135.9 24.0 224 27-291 15-294 (472)
46 PLN02735 carbamoyl-phosphate s 99.6 2.2E-13 4.7E-18 149.2 23.9 226 28-290 599-877 (1102)
47 PRK08591 acetyl-CoA carboxylas 99.6 4.4E-13 9.6E-18 134.1 24.0 227 27-292 15-296 (451)
48 PRK08463 acetyl-CoA carboxylas 99.6 6.2E-13 1.3E-17 134.3 24.9 226 26-292 14-296 (478)
49 PRK08654 pyruvate carboxylase 99.6 3.4E-13 7.5E-18 136.8 22.6 223 27-292 15-295 (499)
50 PRK02186 argininosuccinate lya 99.6 4.9E-13 1.1E-17 144.2 24.3 224 27-291 17-279 (887)
51 PLN02257 phosphoribosylamine-- 99.6 8.2E-13 1.8E-17 131.9 24.0 235 27-311 52-316 (434)
52 PRK12815 carB carbamoyl phosph 99.6 1.3E-12 2.7E-17 143.3 26.5 222 28-290 580-840 (1068)
53 PRK05294 carB carbamoyl phosph 99.5 3.7E-13 8.1E-18 147.5 21.4 228 27-290 31-305 (1066)
54 TIGR01369 CPSaseII_lrg carbamo 99.5 6.1E-13 1.3E-17 145.5 22.5 231 24-290 27-303 (1050)
55 TIGR01235 pyruv_carbox pyruvat 99.5 8.6E-13 1.9E-17 144.3 23.2 223 27-291 12-295 (1143)
56 PF02655 ATP-grasp_3: ATP-gras 99.5 4.1E-14 8.9E-19 122.8 10.3 150 93-288 1-157 (161)
57 PRK00885 phosphoribosylamine-- 99.5 1.2E-12 2.5E-17 130.0 21.7 206 70-311 77-314 (420)
58 PRK12815 carB carbamoyl phosph 99.5 1.8E-12 3.9E-17 142.1 23.5 235 24-296 28-308 (1068)
59 PRK13789 phosphoribosylamine-- 99.5 4.4E-12 9.6E-17 126.4 23.7 234 27-311 58-321 (426)
60 PRK06524 biotin carboxylase-li 99.5 1.9E-12 4.2E-17 129.6 21.0 191 69-290 116-324 (493)
61 PRK06111 acetyl-CoA carboxylas 99.5 7E-12 1.5E-16 125.2 24.7 225 27-291 15-295 (450)
62 TIGR00877 purD phosphoribosyla 99.5 5.5E-12 1.2E-16 125.1 22.3 206 71-311 80-316 (423)
63 PRK12999 pyruvate carboxylase; 99.4 1.4E-11 2.9E-16 135.4 23.4 224 26-291 17-299 (1146)
64 KOG1057 Arp2/3 complex-interac 99.4 5.8E-12 1.3E-16 128.5 16.5 266 4-306 35-340 (1018)
65 PF15632 ATPgrasp_Ter: ATP-gra 99.4 2.9E-11 6.4E-16 116.2 20.6 185 54-290 66-282 (329)
66 TIGR02712 urea_carbox urea car 99.4 6.1E-11 1.3E-15 130.9 25.2 173 80-290 98-293 (1201)
67 COG0439 AccC Biotin carboxylas 99.3 1.1E-10 2.3E-15 116.4 20.7 179 70-288 90-292 (449)
68 COG0458 CarB Carbamoylphosphat 99.3 1.1E-10 2.3E-15 113.5 19.7 228 30-290 22-291 (400)
69 PRK06395 phosphoribosylamine-- 99.3 6.6E-10 1.4E-14 111.1 23.3 202 80-311 89-319 (435)
70 PF02786 CPSase_L_D2: Carbamoy 99.2 2.7E-10 5.9E-15 103.4 13.9 158 95-290 1-181 (211)
71 PF02750 Synapsin_C: Synapsin, 99.2 8.8E-10 1.9E-14 97.3 16.4 169 85-288 1-177 (203)
72 PF02955 GSH-S_ATP: Prokaryoti 99.2 3E-10 6.5E-15 99.9 13.0 138 116-288 11-161 (173)
73 COG1821 Predicted ATP-utilizin 99.1 2.3E-09 5E-14 98.1 16.3 166 86-306 105-276 (307)
74 COG0027 PurT Formate-dependent 99.1 1.2E-08 2.6E-13 95.9 21.0 226 27-294 25-290 (394)
75 PRK05784 phosphoribosylamine-- 99.1 1.5E-08 3.3E-13 102.6 23.3 134 27-196 59-217 (486)
76 COG0026 PurK Phosphoribosylami 99.1 1.4E-08 2.9E-13 97.9 21.3 227 29-294 16-272 (375)
77 PF02222 ATP-grasp: ATP-grasp 99.1 1.6E-09 3.4E-14 95.3 12.8 150 113-290 4-162 (172)
78 PF14398 ATPgrasp_YheCD: YheC/ 99.1 1.4E-08 3E-13 95.1 18.8 189 75-297 3-241 (262)
79 COG2232 Predicted ATP-dependen 99.0 2.5E-08 5.3E-13 94.4 16.8 223 24-294 19-277 (389)
80 PF14397 ATPgrasp_ST: Sugar-tr 98.9 3.9E-07 8.4E-12 86.4 20.8 195 85-294 16-265 (285)
81 KOG0238 3-Methylcrotonyl-CoA c 98.9 1.2E-07 2.5E-12 94.1 16.8 177 79-287 94-287 (670)
82 COG3919 Predicted ATP-grasp en 98.7 7.8E-08 1.7E-12 89.9 10.5 170 83-290 102-289 (415)
83 PRK13278 purP 5-formaminoimida 98.7 8.6E-07 1.9E-11 86.5 17.9 142 27-194 30-211 (358)
84 PRK13277 5-formaminoimidazole- 98.7 5.2E-07 1.1E-11 87.5 15.6 160 94-287 125-317 (366)
85 COG4770 Acetyl/propionyl-CoA c 98.7 1E-06 2.2E-11 88.6 17.3 172 79-287 98-291 (645)
86 KOG3895 Synaptic vesicle prote 98.6 4.5E-07 9.8E-12 86.3 11.5 218 55-309 156-390 (488)
87 PF03133 TTL: Tubulin-tyrosine 98.5 2.8E-06 6.1E-11 80.4 14.0 100 92-196 18-127 (292)
88 COG1038 PycA Pyruvate carboxyl 98.4 1.4E-05 3.1E-10 83.2 18.6 220 29-287 22-297 (1149)
89 COG0151 PurD Phosphoribosylami 98.4 4.6E-05 1E-09 74.9 20.3 233 27-312 53-316 (428)
90 PF01071 GARS_A: Phosphoribosy 98.2 7.9E-05 1.7E-09 66.7 16.4 89 95-199 2-106 (194)
91 KOG0369 Pyruvate carboxylase [ 98.2 0.00013 2.9E-09 74.9 17.8 170 79-288 130-324 (1176)
92 KOG0370 Multifunctional pyrimi 97.9 4.9E-05 1.1E-09 80.4 9.4 176 80-294 1017-1215(1435)
93 TIGR01016 sucCoAbeta succinyl- 97.5 0.00039 8.4E-09 68.6 9.0 90 97-198 6-117 (386)
94 PRK00696 sucC succinyl-CoA syn 97.4 0.00066 1.4E-08 67.0 8.5 93 95-199 4-118 (388)
95 KOG2156 Tubulin-tyrosine ligas 97.3 0.0014 3E-08 65.9 9.1 64 263-328 476-545 (662)
96 PF14305 ATPgrasp_TupA: TupA-l 97.1 0.051 1.1E-06 50.3 17.5 182 85-294 10-223 (239)
97 KOG0368 Acetyl-CoA carboxylase 97.0 0.011 2.5E-07 65.6 13.3 211 51-287 134-375 (2196)
98 PF14403 CP_ATPgrasp_2: Circul 96.5 0.018 3.9E-07 57.8 9.9 148 27-184 203-385 (445)
99 PF13549 ATP-grasp_5: ATP-gras 96.2 0.0063 1.4E-07 55.8 4.8 93 94-198 10-122 (222)
100 PF14243 DUF4343: Domain of un 96.1 0.24 5.2E-06 41.5 13.2 109 143-290 3-117 (130)
101 PRK14046 malate--CoA ligase su 94.4 0.19 4.2E-06 49.9 8.8 88 98-197 7-116 (392)
102 KOG0237 Glycinamide ribonucleo 94.4 1.4 3E-05 45.6 14.8 137 27-197 58-208 (788)
103 PF08442 ATP-grasp_2: ATP-gras 94.0 0.42 9.2E-06 43.1 9.4 86 98-194 6-113 (202)
104 KOG2157 Predicted tubulin-tyro 91.6 0.2 4.2E-06 51.2 4.0 56 139-197 197-270 (497)
105 PF07065 D123: D123; InterPro 90.8 1.3 2.8E-05 42.5 8.5 94 173-294 149-244 (299)
106 COG0045 SucC Succinyl-CoA synt 90.7 1.4 3E-05 43.4 8.8 73 113-189 15-106 (387)
107 KOG0370 Multifunctional pyrimi 90.4 0.17 3.6E-06 54.7 2.3 230 27-289 401-671 (1435)
108 COG1759 5-formaminoimidazole-4 87.6 0.94 2E-05 43.6 5.0 66 95-183 124-203 (361)
109 PLN00124 succinyl-CoA ligase [ 83.7 1.8 3.8E-05 43.6 5.1 63 97-171 33-106 (422)
110 PF02951 GSH-S_N: Prokaryotic 81.6 4.6 0.0001 33.4 6.0 80 11-91 2-119 (119)
111 KOG2158 Tubulin-tyrosine ligas 80.5 1.6 3.5E-05 43.9 3.4 54 140-197 225-285 (565)
112 PLN02235 ATP citrate (pro-S)-l 78.8 14 0.00031 37.1 9.4 72 113-186 23-115 (423)
113 KOG2155 Tubulin-tyrosine ligas 78.0 2.2 4.7E-05 42.8 3.4 45 138-185 409-455 (631)
114 PF02729 OTCace_N: Aspartate/o 69.8 25 0.00053 29.8 7.5 73 6-85 36-121 (142)
115 PHA02117 glutathionylspermidin 64.5 26 0.00055 35.0 7.5 165 26-206 193-380 (397)
116 COG0078 ArgF Ornithine carbamo 58.2 1.5E+02 0.0031 28.7 11.0 126 8-146 43-182 (310)
117 PRK12562 ornithine carbamoyltr 52.7 57 0.0012 31.8 7.5 71 8-85 44-127 (334)
118 TIGR02049 gshA_ferroox glutama 52.4 1.4E+02 0.0031 29.6 10.1 56 144-202 260-337 (403)
119 KOG2983 Uncharacterized conser 50.7 67 0.0015 30.4 7.2 85 176-292 165-255 (334)
120 PF08532 Glyco_hydro_42M: Beta 48.5 23 0.00051 31.6 3.9 66 29-98 35-103 (207)
121 PRK03515 ornithine carbamoyltr 45.0 79 0.0017 30.8 7.2 71 8-85 44-127 (336)
122 PRK01713 ornithine carbamoyltr 43.3 80 0.0017 30.7 7.0 71 8-85 45-128 (334)
123 PRK02102 ornithine carbamoyltr 42.8 82 0.0018 30.7 6.9 71 8-85 45-128 (331)
124 PRK00779 ornithine carbamoyltr 41.8 97 0.0021 29.7 7.2 72 7-85 41-125 (304)
125 PRK04284 ornithine carbamoyltr 40.4 1.1E+02 0.0023 29.9 7.3 71 8-85 44-127 (332)
126 KOG2157 Predicted tubulin-tyro 39.1 48 0.001 34.1 4.9 41 263-305 377-417 (497)
127 PF04556 DpnII: DpnII restrict 38.7 54 0.0012 31.3 4.8 34 255-290 179-218 (286)
128 PRK14805 ornithine carbamoyltr 38.6 1.2E+02 0.0026 29.0 7.3 73 8-87 37-122 (302)
129 PF04174 CP_ATPgrasp_1: A circ 36.9 41 0.00089 32.7 3.8 26 262-289 67-92 (330)
130 TIGR00670 asp_carb_tr aspartat 36.4 1.6E+02 0.0035 28.1 7.8 74 8-88 38-125 (301)
131 COG0754 Gsp Glutathionylspermi 34.6 24 0.00052 34.7 1.8 150 27-196 189-354 (387)
132 TIGR00658 orni_carb_tr ornithi 34.1 1.8E+02 0.0039 27.8 7.7 71 8-85 38-121 (304)
133 PLN02342 ornithine carbamoyltr 33.8 1.4E+02 0.0031 29.3 7.0 71 8-85 84-167 (348)
134 PF02310 B12-binding: B12 bind 33.1 1.6E+02 0.0035 23.1 6.3 32 16-47 7-38 (121)
135 PRK02255 putrescine carbamoylt 31.9 1.8E+02 0.0039 28.4 7.4 71 8-85 41-124 (338)
136 cd03143 A4_beta-galactosidase_ 30.6 1.8E+02 0.0038 24.2 6.4 57 27-87 29-88 (154)
137 COG1181 DdlA D-alanine-D-alani 30.0 4.1 8.8E-05 39.4 -4.3 110 79-204 35-158 (317)
138 PRK10507 bifunctional glutathi 29.9 1.6E+02 0.0034 31.3 7.0 107 79-205 482-600 (619)
139 PF08886 GshA: Glutamate-cyste 29.7 1.2E+02 0.0025 30.3 5.6 56 144-202 263-340 (404)
140 PLN02527 aspartate carbamoyltr 27.5 2.2E+02 0.0048 27.2 7.1 74 7-87 37-125 (306)
141 PF08886 GshA: Glutamate-cyste 27.5 1.1E+02 0.0024 30.5 5.0 57 252-311 14-72 (404)
142 PRK00856 pyrB aspartate carbam 27.3 2.7E+02 0.006 26.6 7.7 74 8-88 44-131 (305)
143 TIGR00853 pts-lac PTS system, 27.2 83 0.0018 24.6 3.5 65 24-88 18-85 (95)
144 PF12058 DUF3539: Protein of u 24.8 47 0.001 25.9 1.5 20 179-198 3-24 (88)
145 PRK11891 aspartate carbamoyltr 23.6 2.8E+02 0.006 28.1 7.2 74 7-87 124-211 (429)
146 TIGR02307 RNA_lig_RNL2 RNA lig 23.3 5E+02 0.011 25.3 8.6 31 173-205 24-55 (325)
147 cd02065 B12-binding_like B12 b 23.0 2.5E+02 0.0055 22.0 5.8 22 27-48 17-38 (125)
148 PF00764 Arginosuc_synth: Argi 22.0 2.1E+02 0.0045 28.6 5.9 59 54-121 105-165 (388)
149 cd06353 PBP1_BmpA_Med_like Per 21.5 4.1E+02 0.0089 24.3 7.5 35 12-46 2-40 (258)
150 PRK05370 argininosuccinate syn 20.8 2.7E+02 0.006 28.3 6.5 83 14-120 99-186 (447)
151 PRK07200 aspartate/ornithine c 20.7 4.5E+02 0.0097 26.3 8.0 73 11-86 62-158 (395)
No 1
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=100.00 E-value=9e-84 Score=607.72 Aligned_cols=300 Identities=45% Similarity=0.825 Sum_probs=244.7
Q ss_pred CCceEEEEEeccCCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCCCccEEEEccCChhHHHHHHHHHHhCCCceecCh
Q 047754 7 QPYCKIGYVFAPNKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDP 86 (330)
Q Consensus 7 ~~~~~vg~~~~~~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp 86 (330)
+++++|||||++||+++|+|++|+.+|+++|+++++||+++|+++|||||+||||+|+..|++.+++|+++||+++||||
T Consensus 5 ~~~~~VGy~l~~kK~~~~~~~~~~~~~~~~gi~~v~id~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v~viDp 84 (307)
T PF05770_consen 5 RKRFRVGYALSPKKQKSFIQPSFIDLARSRGIDFVPIDLSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEVVVIDP 84 (307)
T ss_dssp GTT-EEEEE--HHHHHHHCCCHHCCCCCCCTTEEEEEECCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTSEEET-
T ss_pred ccceEEEEEECHHHHHHhhHHHHHHHHHhcCCEEEEcCCCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCeEEEcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeCh
Q 047754 87 PESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDN 166 (330)
Q Consensus 87 ~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~ 166 (330)
+++|+.++||..|+++|.+++......+|++|+++++.+. .......+.+++|+||+||||++||||+.||.|+||+++
T Consensus 85 ~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~-~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~ 163 (307)
T PF05770_consen 85 PDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSD-AESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFNE 163 (307)
T ss_dssp HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSS-HCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SG
T ss_pred HHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCC-HHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEECH
Confidence 9999999999999999999887778889999999999964 222234677899999999999999999999999999999
Q ss_pred hhhhcCCCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCcc-ccc--cccCC
Q 047754 167 EGLEVLEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADE-EVD--LEKTE 243 (330)
Q Consensus 167 ~~L~~l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~-~~~--~~~~~ 243 (330)
++|+++++||++||||||+|++|||||||++++++.|+|+||++.++.....++|+|+++|+.++.+.. ..+ +...+
T Consensus 164 ~gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~ 243 (307)
T PF05770_consen 164 EGLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVE 243 (307)
T ss_dssp GGGTT--SSEEEEE----TTEEEEEEEETTEEEEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTT
T ss_pred HHHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCCCCCcccccccccceeccccCCccccCchhhcccCccccc
Confidence 999999999999999999999999999999999999999999988877666789999999999887652 112 34456
Q ss_pred CCchHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeeEEEEeeCCCCCCCCCCcHHHHHHHHHH
Q 047754 244 MPREGFVVELSRALREALGLNLFNFDLIRDAGERDGYLVIDINYLPGYAKLPGYETLLMDFFLN 307 (330)
Q Consensus 244 ~~~~~~~~~lA~~~~~~LGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~~~~l~~~i~~ 307 (330)
.|+.+.++++|..+|++|||+|||||+|++++|+++||||||||||||+|+|+|++.|+++|++
T Consensus 244 ~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp~f~~~l~~~~~~ 307 (307)
T PF05770_consen 244 MPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDINYFPGYKKVPDFESVLTDFILD 307 (307)
T ss_dssp S--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEEEES--TTTSCTHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEeccCCCccCCCChHHHHHHHhhC
Confidence 6778999999999999999999999999999994468999999999999999999999999974
No 2
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=100.00 E-value=3.4e-77 Score=569.64 Aligned_cols=312 Identities=52% Similarity=0.928 Sum_probs=283.0
Q ss_pred CCCCCCCCceEEEEEeccCCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCCCccEEEEccCChhHHHHHHHHHHhCCC
Q 047754 1 MSNHEGQPYCKIGYVFAPNKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRNPD 80 (330)
Q Consensus 1 ~~~~~~~~~~~vg~~~~~~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~~DvilhK~~~~~~~~~l~~~~~~~p~ 80 (330)
|++...+++++|||||++||.++|.|+.|+++|+++|+++++||+++|+.+|||||+||||++++.|++.+++|+.+|||
T Consensus 13 ~~~~~~~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pg 92 (328)
T PLN02941 13 LSSSSQQKRFVVGYALTPKKVKSFLQPSLEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHPD 92 (328)
T ss_pred ccccccCCceEEEEEECHHHHHHHhhHHHHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCCC
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcce
Q 047754 81 VRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQM 160 (330)
Q Consensus 81 v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m 160 (330)
++||||+++|++|+||+.|+++|+++..+.+..+|++|+|+++.+.+.... .....++++||+|+||+.||||++||+|
T Consensus 93 v~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~-~~~~~~~l~~P~V~KPl~g~Gss~gh~m 171 (328)
T PLN02941 93 VTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIP-DAVALAGLKFPLVAKPLVADGSAKSHKM 171 (328)
T ss_pred cEEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHH-HHHHHhcCCCCEEEeecccCCCccccce
Confidence 999999999999999999999999877666677799999999999766332 1244589999999999999999999999
Q ss_pred EEEeChhhhhcCCCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccc----
Q 047754 161 YLIFDNEGLEVLEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEE---- 236 (330)
Q Consensus 161 ~iv~~~~~L~~l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~---- 236 (330)
++|+++++|..++.|+|+||||||+|+|||||||||++.++.|+|+|||..++..+..|.++|+++||+++++...
T Consensus 172 ~lv~~~~~L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~ 251 (328)
T PLN02941 172 SLAYDQEGLSKLEPPLVLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGG 251 (328)
T ss_pred EEecCHHHHHhcCCcEEEEEecCCCCEEEEEEEECCEEEEEEecCCcccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999988999999999865444556899999999999876522
Q ss_pred cccccCCCCchHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeeEEEEeeCCCCCCCCCCcHHHHHHHHHHHHHhcc
Q 047754 237 VDLEKTEMPREGFVVELSRALREALGLNLFNFDLIRDAGERDGYLVIDINYLPGYAKLPGYETLLMDFFLNVAKSKA 313 (330)
Q Consensus 237 ~~~~~~~~~~~~~~~~lA~~~~~~LGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~~~~l~~~i~~~~~~~~ 313 (330)
.++...++|+++++++||.+++++||++|||||+|++.+++++|+||||||||||+|+|+|++.|++++++++++++
T Consensus 252 ~~~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p~~~~~l~~~~~~~~~~~~ 328 (328)
T PLN02941 252 LDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPGYAKMPGYETVLTDFLLSLVQKKY 328 (328)
T ss_pred cccccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEEEEecCCCccccCCchHHHHHHHHHHHHhcCC
Confidence 12334556678899999999999999999999999997666679999999999999999999999999999998764
No 3
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.97 E-value=1.6e-29 Score=239.96 Aligned_cols=252 Identities=15% Similarity=0.227 Sum_probs=188.0
Q ss_pred chHHHHHHHHCCCeEEEeCCCCC---CC-----------cCCCccEEEEccCCh--hHHHHHHHHHHhCCCceecChHHH
Q 047754 26 QPSLITKATEQGIGLIRIDPDKP---LT-----------EQGPFDCIMHKLYGP--DWTQQLQQFSSRNPDVRIIDPPES 89 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~---l~-----------~q~~~DvilhK~~~~--~~~~~l~~~~~~~p~v~viDp~~a 89 (330)
.+++.++++++|+++..+|++.. +. ...++|+++.++..+ .......+.++. .|++++|++.+
T Consensus 15 ~~~~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~le~-~g~~v~n~~~a 93 (300)
T PRK10446 15 CKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEM-LGSYPLNESVA 93 (300)
T ss_pred HHHHHHHHHHcCCeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHHHHHH-CCCceecCHHH
Confidence 37799999999999999998852 11 123789999988763 222222334433 47899999999
Q ss_pred HHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhh
Q 047754 90 IERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGL 169 (330)
Q Consensus 90 i~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L 169 (330)
+..++||+.+.+.|.+ .|||+|+|.++.+.+.... .+ +.-.+||+|+||..++ +|.++.++.+.+++
T Consensus 94 ~~~~~dK~~~~~~l~~-------~gip~P~t~~~~~~~~~~~--~~-~~~~~~P~VvKP~~g~---~g~GV~~v~~~~~~ 160 (300)
T PRK10446 94 IARARDKLRSMQLLAR-------QGIDLPVTGIAHSPDDTSD--LI-DMVGGAPLVVKLVEGT---QGIGVVLAETRQAA 160 (300)
T ss_pred HHhhhcHHHHHHHHHH-------cCCCCCCEEEeCCHHHHHH--HH-HHhCCCCEEEEECCCC---CcccEEEEcCHHHH
Confidence 9999999999999986 8999999998876554332 22 2223799999999953 57899999998776
Q ss_pred hc-------CCCCeEEEecccC-CCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCcccccccc
Q 047754 170 EV-------LEAPILLQEFVNH-GGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEK 241 (330)
Q Consensus 170 ~~-------l~~p~vvQefI~h-~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~ 241 (330)
.. ++.++++||||++ .|++++|+|+|++++.+.++..+. ++|++ |+..|+. ..+
T Consensus 161 ~~~~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~~---~~~~~-----------n~~~g~~----~~~ 222 (300)
T PRK10446 161 ESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKE---GDFRS-----------NLHRGGA----ASV 222 (300)
T ss_pred HHHHHHHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecCC---Cchhh-----------eeccCCe----ecc
Confidence 54 3568999999987 599999999999987665542211 12332 5554421 122
Q ss_pred CCCCchHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeeEEEEeeCCCCCCCCCC-----cHHHHHHHHHHHHHhccc
Q 047754 242 TEMPREGFVVELSRALREALGLNLFNFDLIRDAGERDGYLVIDINYLPGYAKLPG-----YETLLMDFFLNVAKSKAV 314 (330)
Q Consensus 242 ~~~~~~~~~~~lA~~~~~~LGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~-----~~~~l~~~i~~~~~~~~~ 314 (330)
.+ ..++++++|.++.++||+.++|||++.+. +| +||+|||..|||+++.. +.+.+.++|.+.++.+|+
T Consensus 223 ~~--l~~~~~~~a~~a~~alg~~~~gvD~~~~~-~g--~~vlEvN~~pg~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 295 (300)
T PRK10446 223 AS--ITPQEREIAIKAARTMALDVAGVDILRAN-RG--PLVMEVNASPGLEGIEKTTGIDIAGKMIRWIERHATTEYC 295 (300)
T ss_pred CC--CCHHHHHHHHHHHHHhCCCEEEEEEEEcC-CC--cEEEEEECCCChhhhHHHHCcCHHHHHHHHHHHhcccccC
Confidence 22 35668999999999999999999999874 34 58999999999998854 568888888877766665
No 4
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.4e-29 Score=242.16 Aligned_cols=246 Identities=21% Similarity=0.307 Sum_probs=181.6
Q ss_pred HHHHHHHHCCCeEEEeCCCCCCC-------------------------------cCCCccEEEEccCChhHH-HHHHHHH
Q 047754 28 SLITKATEQGIGLIRIDPDKPLT-------------------------------EQGPFDCIMHKLYGPDWT-QQLQQFS 75 (330)
Q Consensus 28 ~l~~~~~~~Gi~~~~id~~~~l~-------------------------------~q~~~DvilhK~~~~~~~-~~l~~~~ 75 (330)
++.+++.++|+++..+++..... .-.++|+++.|....... -.+.+.+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~~~~~~~~~ 100 (318)
T COG0189 21 ALMEAAQKRGHELAILDDGDLSLRKGEIKALARLVEVGEVIGLHYELIEEEDLSLLDELDVIIMRKDPPFDFATRFLRLA 100 (318)
T ss_pred HHHHHHHhhCceEEEEcccccccccchhHHHHHhhhhhhccccccccccccccchhccCCEEEEecCCchhhHHHHHHHH
Confidence 35666777888888887763210 112689999998775432 1222222
Q ss_pred HhCCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCC
Q 047754 76 SRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSD 155 (330)
Q Consensus 76 ~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~ 155 (330)
+.-|++||||++++..|.||+.++++|+. .++|+|+|+++.+.++.. ...+..++||+|+||+.| |
T Consensus 101 -E~~G~~viN~p~~i~~~~nK~~~~~~l~~-------~~ipvP~T~i~~~~~~~~---~~~~~~~g~pvVlKp~~G--s- 166 (318)
T COG0189 101 -ERKGVPVINDPQSIRRCRNKLYTTQLLAK-------AGIPVPPTLITRDPDEAA---EFVAEHLGFPVVLKPLDG--S- 166 (318)
T ss_pred -HHcCCeEECCHHHHHhhhhHHHHHHHHHh-------cCCCCCCEEEEcCHHHHH---HHHHHhcCCCEEEeeCCC--C-
Confidence 33599999999999999999999999986 899999999999974433 344678999999999994 5
Q ss_pred CCcceEEEeChh-hhhcC--------CCCeEEEecccCCCeEEEEEEECCeEEEEE---eecCCCcchhhhhccCccccc
Q 047754 156 KSHQMYLIFDNE-GLEVL--------EAPILLQEFVNHGGIIFKVYVAGSSVKCVK---RKSLPDISEEKMKSLKGFLPF 223 (330)
Q Consensus 156 ~sh~m~iv~~~~-~L~~l--------~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~---R~S~~~~~~~~~~~~~g~~~f 223 (330)
++.++.++.+.+ +|..+ ..++++||||+..++++|.+++||...+++ ++-.. .++|++
T Consensus 167 ~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y~~~R~~~---~~~~R~------- 236 (318)
T COG0189 167 GGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALARIPA---SGDFRS------- 236 (318)
T ss_pred CccceEEecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEeeeccccC---CCCcee-------
Confidence 889999999998 77653 236999999999988887777777666443 33111 134554
Q ss_pred CCcccCCCCCccccccccCCCCchHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeeEEEEeeCCCCCCCC----CC--c
Q 047754 224 SQISSNSVDADEEVDLEKTEMPREGFVVELSRALREALGLNLFNFDLIRDAGERDGYLVIDINYLPGYAKL----PG--Y 297 (330)
Q Consensus 224 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~----~~--~ 297 (330)
|++.| +.+++.++ +++++++|.+++++||+.++|||+++++ . ++||+|||.+|++++. ++ .
T Consensus 237 ----N~a~G----g~~e~~~l--~~e~~elA~kaa~~lGl~~~GVDiie~~-~--g~~V~EVN~sP~~~~~i~~~~g~~~ 303 (318)
T COG0189 237 ----NLARG----GRAEPCEL--TEEEEELAVKAAPALGLGLVGVDIIEDK-D--GLYVTEVNVSPTGKGEIERVTGVNI 303 (318)
T ss_pred ----ecccc----ccccccCC--CHHHHHHHHHHHHHhCCeEEEEEEEecC-C--CcEEEEEeCCCccccchhhhcCCch
Confidence 88887 34455544 5678999999999999999999999883 3 4799999999987773 33 4
Q ss_pred HHHHHHHHHHHHH
Q 047754 298 ETLLMDFFLNVAK 310 (330)
Q Consensus 298 ~~~l~~~i~~~~~ 310 (330)
...+.+++...++
T Consensus 304 ~~~~~~~ie~~~~ 316 (318)
T COG0189 304 AGLIIDAIEKFVR 316 (318)
T ss_pred HHHHHHHHHHHHh
Confidence 5666666655543
No 5
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.97 E-value=1.4e-28 Score=230.23 Aligned_cols=243 Identities=19% Similarity=0.249 Sum_probs=181.4
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCC-------cCCCccEEEEccCChhHHHHHHHHHHhCCCceecChHHHHHHhcCHHHH
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLT-------EQGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDPPESIERLHNRDSM 99 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~-------~q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~~ 99 (330)
+.|+++++++|+++..+++..... +-.++|+++.|.........+...++ .-|++++||+++++.+.||..+
T Consensus 13 ~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le-~~g~~~~n~~~~~~~~~dK~~~ 91 (280)
T TIGR02144 13 KMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLE-ALGVPVINSSHVIEACGDKIFT 91 (280)
T ss_pred HHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHH-HCCCcEECcHHHHHHHhhHHHH
Confidence 668999999999999998875311 12468999998544332222333333 3489999999999999999999
Q ss_pred HHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC-------
Q 047754 100 LEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL------- 172 (330)
Q Consensus 100 ~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------- 172 (330)
+++|++ .|||+|+|..+.+.+.... .. ..++||+|+||..++ +++++.++.+.+++.++
T Consensus 92 ~~~l~~-------~gip~P~t~~~~~~~~~~~--~~--~~~~~P~vvKP~~g~---~g~gv~~v~~~~~l~~~~~~~~~~ 157 (280)
T TIGR02144 92 YLKLAK-------AGVPTPRTYLAFDREAALK--LA--EALGYPVVLKPVIGS---WGRLVALIRDKDELESLLEHKEVL 157 (280)
T ss_pred HHHHHH-------CCcCCCCeEeeCCHHHHHH--HH--HHcCCCEEEEECcCC---CcCCEEEECCHHHHHHHHHHHHhh
Confidence 999986 7999999999876554432 22 568999999999853 56899999999877541
Q ss_pred ----CCCeEEEecccCCCeEEEEEEECCeEEEEE-eecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCch
Q 047754 173 ----EAPILLQEFVNHGGIIFKVYVAGSSVKCVK-RKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPRE 247 (330)
Q Consensus 173 ----~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~-R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~ 247 (330)
+.++++||||++.|++++++|+|+++.+.. |.+ .++.. +...+ +...+.. ..
T Consensus 158 ~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~-~~~~~----------------~~~~g----~~~~~~~--~~ 214 (280)
T TIGR02144 158 GGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS-NHWRT----------------NTARG----GKAEPCP--LD 214 (280)
T ss_pred cCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC-Cchhh----------------hhhcC----CceeccC--CC
Confidence 257999999998799999999999987544 443 22221 22222 1112222 24
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeeEEEEeeCCCCCCCCC-----CcHHHHHHHHHHHH
Q 047754 248 GFVVELSRALREALGLNLFNFDLIRDAGERDGYLVIDINYLPGYAKLP-----GYETLLMDFFLNVA 309 (330)
Q Consensus 248 ~~~~~lA~~~~~~LGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~-----~~~~~l~~~i~~~~ 309 (330)
++++++|.++.+++|+.++|||++.+. +|. ++|+|||..|||.++. ++.+.+++++.+++
T Consensus 215 ~~~~~~a~~~~~~lg~~~~~vD~~~~~-~g~-~~v~EvN~~p~~~~~~~~~g~~~~~~~~~~~~~~~ 279 (280)
T TIGR02144 215 EEVEELAVKAAEAVGGGVVAIDIFESK-ERG-LLVNEVNHVPEFKNSVRVTGVNVAGEILEYAVSLV 279 (280)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEEEcC-CCC-EEEEEEeCCcchhhhhHhhCCCHHHHHHHHHHHhh
Confidence 568899999999999999999999875 343 7999999999999873 47788888887765
No 6
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.96 E-value=2.4e-27 Score=220.47 Aligned_cols=233 Identities=18% Similarity=0.294 Sum_probs=175.3
Q ss_pred cchHHHHHHHHCCCeEEEeCCCCC---CCc----CCCccEEEEccCChhHHHHHHHHHHhCCCceecChHHHHHHhcCHH
Q 047754 25 IQPSLITKATEQGIGLIRIDPDKP---LTE----QGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDPPESIERLHNRD 97 (330)
Q Consensus 25 ~~~~l~~~~~~~Gi~~~~id~~~~---l~~----q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~ 97 (330)
..+.|+++++++|+++..++++.. +.. ...+|+++.|.........+.+.+++ -|++++|+++++..+.||+
T Consensus 12 ~~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~dK~ 90 (277)
T TIGR00768 12 DEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLES-LGVPVINSSDAILNAGDKF 90 (277)
T ss_pred HHHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHH-CCCeeeCCHHHHHHHhhHH
Confidence 348899999999999999998743 221 34689999998432222344455544 3799999999999999999
Q ss_pred HHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC-----
Q 047754 98 SMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL----- 172 (330)
Q Consensus 98 ~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l----- 172 (330)
.+++.|.+ .|+++|+|..+.+.++... .+ ..++||+|+||..++ +|.++.++.+.+++..+
T Consensus 91 ~~~~~l~~-------~gi~~P~t~~~~~~~~~~~--~~--~~~~~p~vvKP~~g~---~g~gv~~i~~~~~l~~~~~~~~ 156 (277)
T TIGR00768 91 LTSQLLAK-------AGLPQPRTGLAGSPEEALK--LI--EEIGFPVVLKPVFGS---WGRLVSLARDKQAAETLLEHFE 156 (277)
T ss_pred HHHHHHHH-------CCCCCCCEEEeCCHHHHHH--HH--HhcCCCEEEEECcCC---CCCceEEEcCHHHHHHHHHHHH
Confidence 99999986 7999999999987665442 23 567899999999864 46899999999887542
Q ss_pred --C---CCeEEEecccCC-CeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCc
Q 047754 173 --E---APILLQEFVNHG-GIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR 246 (330)
Q Consensus 173 --~---~p~vvQefI~h~-g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~ 246 (330)
. .++++||||++. |.+++++++|++++.+.++..++ +|.+ +...++ ...+..+
T Consensus 157 ~~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~~~----~~~~-----------n~~~g~----~~~~~~l-- 215 (277)
T TIGR00768 157 QLNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRITSG----HWRT-----------NLARGG----KAEPCPL-- 215 (277)
T ss_pred HhcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcCCC----chhh-----------hhhcCC----eeeecCC--
Confidence 2 379999999976 48999999999998665543221 2221 322221 1122222
Q ss_pred hHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeeEEEEeeCCCCCCCCC
Q 047754 247 EGFVVELSRALREALGLNLFNFDLIRDAGERDGYLVIDINYLPGYAKLP 295 (330)
Q Consensus 247 ~~~~~~lA~~~~~~LGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~ 295 (330)
.++++++|.++.++||+.++|||++++. +|+ ++|+|||..|||.++.
T Consensus 216 ~~~~~~~a~~~~~~l~~~~~~vD~~~~~-~g~-~~viEiN~~p~~~~~~ 262 (277)
T TIGR00768 216 TEEIEELAIKAAKALGLDVVGIDLLESE-DRG-LLVNEVNPNPEFKNSV 262 (277)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEEEcC-CCC-eEEEEEcCCcchhhhH
Confidence 4568999999999999999999999985 453 7999999999998874
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.95 E-value=6e-27 Score=208.58 Aligned_cols=167 Identities=30% Similarity=0.514 Sum_probs=100.0
Q ss_pred cCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC-
Q 047754 94 HNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL- 172 (330)
Q Consensus 94 ~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l- 172 (330)
.||+.++++|++ +|||+|+|.++.+.++... .+.+.+ +||+|+||..+ + .+.+|.++.+.+++..+
T Consensus 2 ~dK~~~~~~l~~-------~gipvP~t~~~~~~~~~~~--~~~~~~-~~p~ViKp~~g--~-~G~gV~~i~~~~~~~~~l 68 (190)
T PF08443_consen 2 EDKLLTLQLLAK-------AGIPVPETRVTNSPEEAKE--FIEELG-GFPVVIKPLRG--S-SGRGVFLINSPDELESLL 68 (190)
T ss_dssp HBHHHHHHHHHH-------TT-----EEEESSHHHHHH--HHHHH---SSEEEE-SB----------EEEESHCHHHHHH
T ss_pred CCHHHHHHHHHH-------CCcCCCCEEEECCHHHHHH--HHHHhc-CCCEEEeeCCC--C-CCCEEEEecCHHHHHHHH
Confidence 599999999997 8999999999998877654 343333 89999999884 3 57899999999877653
Q ss_pred ------CCCeEEEecccCCC-eEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCC
Q 047754 173 ------EAPILLQEFVNHGG-IIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMP 245 (330)
Q Consensus 173 ------~~p~vvQefI~h~g-~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~ 245 (330)
+.++++|+||++.+ +|+||+|||++++.+++++.++ ++|++ |++.|+ ...+..+
T Consensus 69 ~~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~~---~d~r~-----------n~~~g~----~~~~~~l- 129 (190)
T PF08443_consen 69 DAFKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSPE---GDFRT-----------NLSRGG----KVEPYDL- 129 (190)
T ss_dssp H-----TTT-EEEE----SS---EEEEEETTEEEEEEE------------------------------------EE----
T ss_pred HHHHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecCc---ccchh-----------hhccCc----eEEEecC-
Confidence 67999999999875 9999999999999877765443 24544 555442 2233333
Q ss_pred chHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeeEEEEeeCCCCCCCCCC
Q 047754 246 REGFVVELSRALREALGLNLFNFDLIRDAGERDGYLVIDINYLPGYAKLPG 296 (330)
Q Consensus 246 ~~~~~~~lA~~~~~~LGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~ 296 (330)
.+++.++|.++.++||++++|||++..+ + ++||+|||.+|||+++..
T Consensus 130 -~~e~~~~a~~~~~~lgl~~~giDi~~~~--~-~~~v~EvN~~~~~~~~~~ 176 (190)
T PF08443_consen 130 -PEEIKELALKAARALGLDFAGIDILDTN--D-GPYVLEVNPNPGFRGIEE 176 (190)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEEEEEEET--T-EEEEEEEETT---TTHHH
T ss_pred -CHHHHHHHHHHHHHhCCCEEEEEEEecC--C-CeEEEEecCCchHhHHHH
Confidence 4568899999999999999999977553 2 489999999999999954
No 8
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.93 E-value=8.8e-24 Score=200.27 Aligned_cols=251 Identities=18% Similarity=0.253 Sum_probs=180.3
Q ss_pred EEEEEe-ccCCcccC---cchHHHHHHHHCCCeEEEeCCCCCCCc---CCCccEEEEccCChhH-HHHHHHHHHhCCCce
Q 047754 11 KIGYVF-APNKEQTV---IQPSLITKATEQGIGLIRIDPDKPLTE---QGPFDCIMHKLYGPDW-TQQLQQFSSRNPDVR 82 (330)
Q Consensus 11 ~vg~~~-~~~k~~~~---~~~~l~~~~~~~Gi~~~~id~~~~l~~---q~~~DvilhK~~~~~~-~~~l~~~~~~~p~v~ 82 (330)
+|+..+ .++..... ....+.++++++|+++..|+.+.++.. ...+|+++....+... ...++.+++.. |++
T Consensus 6 ~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~-gi~ 84 (304)
T PRK01372 6 KVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHGRGGEDGTIQGLLELL-GIP 84 (304)
T ss_pred EEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCCCCCCccHHHHHHHHc-CCC
Confidence 455555 23333333 346689999999999999998866543 3478999998654211 13455666554 899
Q ss_pred ecCh-HHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceE
Q 047754 83 IIDP-PESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMY 161 (330)
Q Consensus 83 viDp-~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~ 161 (330)
++.+ +.++..+.||..+.++|.+ .|||+|++..+.+.++... .. ..++||+|+||..++ +|.|+.
T Consensus 85 ~~g~~~~~~~~~~dK~~~k~~l~~-------~gIp~p~~~~~~~~~~~~~--~~--~~~~~P~ivKP~~g~---~s~Gv~ 150 (304)
T PRK01372 85 YTGSGVLASALAMDKLRTKLVWQA-------AGLPTPPWIVLTREEDLLA--AI--DKLGLPLVVKPAREG---SSVGVS 150 (304)
T ss_pred ccCCCHHHHHHHhCHHHHHHHHHH-------CCCCCCCEEEEeCcchHHH--HH--hhcCCCEEEeeCCCC---CCCCEE
Confidence 9976 7999999999999999986 8999999999988765432 22 678999999999964 458999
Q ss_pred EEeChhhhhc-------CCCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCc
Q 047754 162 LIFDNEGLEV-------LEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDAD 234 (330)
Q Consensus 162 iv~~~~~L~~-------l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~ 234 (330)
++.+.+++.+ ...++++||||+ |++|.|.|+|+++....+...++ +.++|.. ++..+..
T Consensus 151 ~v~~~~el~~~~~~~~~~~~~~lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~~----------~~~~~~~--~~~~g~~ 216 (304)
T PRK01372 151 KVKEEDELQAALELAFKYDDEVLVEKYIK--GRELTVAVLGGKALPVIEIVPAG----------EFYDYEA--KYLAGGT 216 (304)
T ss_pred EeCCHHHHHHHHHHHHhcCCcEEEEcccC--CEEEEEEEECCCccceEEEEecC----------CEEeeec--cccCCCe
Confidence 9999988864 256899999995 89999999999876443322111 2223332 3333211
Q ss_pred cccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 235 EEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 235 ~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
. ...+..++. .+.++++|.++.++||+. +++||++++. +|+ +||+|||..||+.+.
T Consensus 217 ~--~~~p~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~-~g~-~~viEvN~~p~~~~~ 275 (304)
T PRK01372 217 Q--YICPAGLPAEIEAELQELALKAYRALGCRGWGRVDFMLDE-DGK-PYLLEVNTQPGMTSH 275 (304)
T ss_pred E--EEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcC-CCC-EEEEEecCCCCCCcc
Confidence 0 011112222 456889999999999996 6679999985 454 799999999999874
No 9
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.92 E-value=9.5e-24 Score=201.83 Aligned_cols=248 Identities=14% Similarity=0.226 Sum_probs=172.3
Q ss_pred EEEEEecc---CCcccCcchHHHHHHHHCCCeEEEeCCCCCC----------------C------c--------CCCccE
Q 047754 11 KIGYVFAP---NKEQTVIQPSLITKATEQGIGLIRIDPDKPL----------------T------E--------QGPFDC 57 (330)
Q Consensus 11 ~vg~~~~~---~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l----------------~------~--------q~~~Dv 57 (330)
+||+.|.| -|.+...+.+|..+|.++|+++..++++... . . -..||+
T Consensus 2 ~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~ 81 (312)
T TIGR01380 2 KVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPNKQDWYTLGEKVRLSLGELDA 81 (312)
T ss_pred eEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccCCcceeecCcccccccccCCE
Confidence 47777765 3555666778999999999999999998421 0 0 036899
Q ss_pred EEEccCChh-----HHHHHHHHHHhCCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhh
Q 047754 58 IMHKLYGPD-----WTQQLQQFSSRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRD 132 (330)
Q Consensus 58 ilhK~~~~~-----~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~ 132 (330)
++.|-.... ....+.++++. -|++|+||+++++.+.||..+++++. ++|+|.+..+.+....
T Consensus 82 v~~R~~~~~~~~~~~~~~~l~~le~-~g~~viN~p~~i~~~~dK~~~~~~~~-----------~vP~T~v~~~~~~~~~- 148 (312)
T TIGR01380 82 VLMRKDPPFDMEYIYATYLLELADP-TGTLVINSPQGLRDANEKLFTLQFPK-----------VIPPTLVTRDKAEIRA- 148 (312)
T ss_pred EEEeCCCCCChhhhHHHHHHHHHHh-CCCeEEeCHHHHHhhhhHHHHhhCcC-----------CCCCEEEeCCHHHHHH-
Confidence 999964321 11234444433 48999999999999999998876541 6999998877665543
Q ss_pred HHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeCh-hhh-------hcC-CCCeEEEecccC-CCeEEEEEEECCeEEE-E
Q 047754 133 MAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDN-EGL-------EVL-EAPILLQEFVNH-GGIIFKVYVAGSSVKC-V 201 (330)
Q Consensus 133 ~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~-~~L-------~~l-~~p~vvQefI~h-~g~~~Kv~ViG~~v~~-~ 201 (330)
.+ ...+ |+|+||+.| + +++++..+... ..+ ..+ ..|+++|+||+. .+.|+||+|+|++++. +
T Consensus 149 -~~--~~~g-~vVvKPl~G--~-~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~vv~~a 221 (312)
T TIGR01380 149 -FL--AEHG-DIVLKPLDG--M-GGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLIDGEPIGAA 221 (312)
T ss_pred -HH--HHcC-CEEEEECCC--C-CCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEECCeEEEEE
Confidence 23 2334 999999995 3 67889888652 222 222 469999999986 4689999999999875 6
Q ss_pred Eee-cCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCchHHHHHHHHHHH---HHhCCcEEEEEEEEeCCCC
Q 047754 202 KRK-SLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRALR---EALGLNLFNFDLIRDAGER 277 (330)
Q Consensus 202 ~R~-S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~---~~LGl~l~GvDvi~~~~~g 277 (330)
+|+ +.+ ++|++ |.+.|+ ...+.++ .++..++|.++. +++|+.++|||++ |
T Consensus 222 i~R~~~~----gd~r~-----------N~~~Gg----~~~~~~l--~~e~~~ia~~~~~~~~~~gl~~agVDii-----g 275 (312)
T TIGR01380 222 VARIPAG----GEFRG-----------NLAVGG----RGEATEL--SERDREICADVAPELKRRGLLFVGIDVI-----G 275 (312)
T ss_pred EEecCCC----CCccc-----------cccCCc----eeeccCC--CHHHHHHHHHHHHHHHhcCCcEEEEEEe-----C
Confidence 655 332 23443 666552 2333433 445678999887 6779999999999 2
Q ss_pred CeeEEEEeeCC--CCCCCCCC-----cHHHHHHHHH
Q 047754 278 DGYLVIDINYL--PGYAKLPG-----YETLLMDFFL 306 (330)
Q Consensus 278 ~~~~ViEVN~f--Pg~~g~~~-----~~~~l~~~i~ 306 (330)
.+|+|||.. +||.++.. +...+++++.
T Consensus 276 --~~v~EvN~~~p~~~~~~~~~~g~~ia~~i~d~l~ 309 (312)
T TIGR01380 276 --GYLTEVNVTSPTGIREIDRQKGVNIAGMLWDAIE 309 (312)
T ss_pred --CEEEEEecCCcchHHHHHhhhCCCHHHHHHHHHH
Confidence 269999975 59988854 4455555444
No 10
>PRK05246 glutathione synthetase; Provisional
Probab=99.92 E-value=4.2e-23 Score=197.63 Aligned_cols=252 Identities=16% Similarity=0.231 Sum_probs=176.4
Q ss_pred EEEEEecc---CCcccCcchHHHHHHHHCCCeEEEeCCCCCCC---------------c------C---------CCccE
Q 047754 11 KIGYVFAP---NKEQTVIQPSLITKATEQGIGLIRIDPDKPLT---------------E------Q---------GPFDC 57 (330)
Q Consensus 11 ~vg~~~~~---~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~---------------~------q---------~~~Dv 57 (330)
+||+.|.| .|.....+.+|.++|+++|+++..+++..-.. . + ..||+
T Consensus 3 ~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~D~ 82 (316)
T PRK05246 3 KVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGDWYELGEEQRLPLADFDV 82 (316)
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCccceeccccccCccccCCE
Confidence 57777775 35555667789999999999999999884210 0 0 13899
Q ss_pred EEEccCCh-----hHHHHHHHHHHhCCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhh
Q 047754 58 IMHKLYGP-----DWTQQLQQFSSRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRD 132 (330)
Q Consensus 58 ilhK~~~~-----~~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~ 132 (330)
++.|.... .....+.+.++.. |++++|++++++.+.||+.+++++. ++|+|.+..+.+....
T Consensus 83 v~~R~~~~~~~~~~~~~~~l~~le~~-g~~v~N~p~~l~~~~dK~~~~~l~~-----------~vP~T~~~~~~~~~~~- 149 (316)
T PRK05246 83 ILMRKDPPFDMEYIYATYLLERAERP-GTLVVNKPQSLRDANEKLFTLWFPE-----------LMPPTLVTRDKAEIRA- 149 (316)
T ss_pred EEEcCCCCCChHHHHHHHHHHHHHhC-CCeEECCHHHHHhCccHHHHHhhhc-----------cCCCEEEeCCHHHHHH-
Confidence 99885432 1122344444433 8999999999999999999877542 6999998887665542
Q ss_pred HHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeC-hhhh-------hcC-CCCeEEEecccCC-CeEEEEEEECCeEEE-E
Q 047754 133 MAIEELKLRFPLIAKPLEANGSDKSHQMYLIFD-NEGL-------EVL-EAPILLQEFVNHG-GIIFKVYVAGSSVKC-V 201 (330)
Q Consensus 133 ~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~-~~~L-------~~l-~~p~vvQefI~h~-g~~~Kv~ViG~~v~~-~ 201 (330)
.+ ...+ |+|+||+.| + ++.++..+.. ..++ ... ..++++|+||+.. +.|+||+|+|+++++ +
T Consensus 150 -~~--~~~~-~vVlKP~~G--~-~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv~g~vv~~a 222 (316)
T PRK05246 150 -FR--AEHG-DIILKPLDG--M-GGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLVDGEPVGYA 222 (316)
T ss_pred -HH--HHCC-CEEEEECCC--C-CccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEECCEEhhhe
Confidence 33 2233 999999995 4 6688888854 2222 222 4699999999864 679999999999887 6
Q ss_pred EeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCchHHHHHHHHHHH---HHhCCcEEEEEEEEeCCCCC
Q 047754 202 KRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRALR---EALGLNLFNFDLIRDAGERD 278 (330)
Q Consensus 202 ~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~---~~LGl~l~GvDvi~~~~~g~ 278 (330)
++|..+. ++|++ |++.|+ ...+.++ .++..++|.++. +.+|+.++|||++ +
T Consensus 223 ~~R~~~~---~~~rt-----------N~~~Gg----~~~~~~l--~~~~~~ia~~~~~~l~~~gl~~~GVDli---~--- 276 (316)
T PRK05246 223 LARIPAG---GETRG-----------NLAAGG----RGEATPL--TERDREICAAIGPELKERGLIFVGIDVI---G--- 276 (316)
T ss_pred eEecCCC---CCccc-----------CccCCc----eEeccCC--CHHHHHHHHHHHHHHHHhCCCEEEEEEe---C---
Confidence 6553221 23433 777663 3344443 455678998888 5779999999999 2
Q ss_pred eeEEEEeeCC-C-CCCCCCC-----cHHHHHHHHHHHH
Q 047754 279 GYLVIDINYL-P-GYAKLPG-----YETLLMDFFLNVA 309 (330)
Q Consensus 279 ~~~ViEVN~f-P-g~~g~~~-----~~~~l~~~i~~~~ 309 (330)
. ||+|||.+ | ||.++.. ....+++++.+.+
T Consensus 277 ~-~l~EvN~~~p~~~~~~~~~tg~~ia~~i~~~~~~~~ 313 (316)
T PRK05246 277 D-YLTEINVTSPTGIREIERLTGVDIAGMLWDAIEAKL 313 (316)
T ss_pred C-EEEEEeCCCchHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2 59999986 6 8999855 4566666666554
No 11
>PRK12458 glutathione synthetase; Provisional
Probab=99.91 E-value=8e-23 Score=197.48 Aligned_cols=246 Identities=16% Similarity=0.250 Sum_probs=173.4
Q ss_pred ccCcchHHHHHHHHCCCeEEEeCCCCCCCc--------------------------------------CCCccEEEEccC
Q 047754 22 QTVIQPSLITKATEQGIGLIRIDPDKPLTE--------------------------------------QGPFDCIMHKLY 63 (330)
Q Consensus 22 ~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~--------------------------------------q~~~DvilhK~~ 63 (330)
....+.+|+.+|.++|+++..+++...... ...||+|++|-.
T Consensus 9 ~~~st~~l~~~a~~rgh~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~V~~R~~ 88 (338)
T PRK12458 9 ETDTTLRLAHEAVNRGHEVAYTTPGDLTIRDDEALAFCAVTKKGKKYKKPENFLSFLKKAEFKKERLPLAGFDVIFLRAN 88 (338)
T ss_pred CCchHHHHHHHHHHcCCEEEEEecCcEEEECCEEEEEEEEEEecCcccCccchhhHhhccccccccCchhhCCEEEEeCC
Confidence 455667899999999999998888742100 124899999964
Q ss_pred Ch---hHHHHHHH------HHHhCCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHH
Q 047754 64 GP---DWTQQLQQ------FSSRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMA 134 (330)
Q Consensus 64 ~~---~~~~~l~~------~~~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~ 134 (330)
.. .+...+.. ...+..|++++|++++++.+.||+.++. |. . +++|+|++..+.+.... .
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~-l~--------~-~~vP~T~v~~~~~~~~~--~ 156 (338)
T PRK12458 89 PPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQS-FP--------E-EVRPTTHISRNKEYIRE--F 156 (338)
T ss_pred CCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHh-hc--------c-CCCCCEEEeCCHHHHHH--H
Confidence 32 22333332 2233458999999999999999998754 32 1 57999998887655432 2
Q ss_pred HHHhcCCC-cEEEeeCCCCCCCCCcceEEEeChhh--hhc----C--CCCeEEEecccC-CCeEEEEEEECCeEE-----
Q 047754 135 IEELKLRF-PLIAKPLEANGSDKSHQMYLIFDNEG--LEV----L--EAPILLQEFVNH-GGIIFKVYVAGSSVK----- 199 (330)
Q Consensus 135 l~~~~l~f-P~VvKp~~a~Gs~~sh~m~iv~~~~~--L~~----l--~~p~vvQefI~h-~g~~~Kv~ViG~~v~----- 199 (330)
+ ...++ |+|+||+.|+ +++++.++.+.+. +.. + ..++++|+||+. .+.++|++|+|++++
T Consensus 157 ~--~~~~~~pvVvKPl~G~---gG~gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~~gDiRv~vv~g~~v~~~g~ 231 (338)
T PRK12458 157 L--EESPGDKMILKPLQGS---GGQGVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILLLNGEPLERDGH 231 (338)
T ss_pred H--HHcCCCeEEEEECCCC---CccCeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCCCCCCEEEEEECCEEEeeccc
Confidence 3 34544 5999999953 6689999986543 322 1 458999999986 467999999999999
Q ss_pred -EEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCchHHHHHHHHHHHHHh---CCcEEEEEEEEeCC
Q 047754 200 -CVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRALREAL---GLNLFNFDLIRDAG 275 (330)
Q Consensus 200 -~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~L---Gl~l~GvDvi~~~~ 275 (330)
+++++.... ++|++ |++.|+ ...+.++ .+..+++|.++..+| ||.+.|||++ +
T Consensus 232 ~~a~~R~~~~---~d~Rs-----------N~~~Gg----~~~~~~l--~~~~~~ia~~~~~~l~~~GL~~~gVDli---~ 288 (338)
T PRK12458 232 YAAMRRVPAG---GDVRS-----------NVHAGG----SVVKHTL--TKEELELCEAIRPKLVRDGLFFVGLDIV---G 288 (338)
T ss_pred eeEEEEecCC---CCeee-----------cccCCC----cccCcCC--CHHHHHHHHHHHHHHhhcCCeEEeEEEE---C
Confidence 777654221 23433 565552 2333333 566789999999988 9999999999 2
Q ss_pred CCCeeEEEEeeC-CC-CCCCC-----CCcHHHHHHHHHHHHHh
Q 047754 276 ERDGYLVIDINY-LP-GYAKL-----PGYETLLMDFFLNVAKS 311 (330)
Q Consensus 276 ~g~~~~ViEVN~-fP-g~~g~-----~~~~~~l~~~i~~~~~~ 311 (330)
+ +|+|||. +| |+.++ .++...++++|.+.++.
T Consensus 289 -~---~l~EIN~~sp~g~~~~~~~~g~d~a~~i~~~i~~~~~~ 327 (338)
T PRK12458 289 -D---KLVEVNVFSPGGLTRINKLNKIDFVEDIIEALERKVQR 327 (338)
T ss_pred -C---EEEEEeCCCcchHHHHHHHhCCCHHHHHHHHHHHHHhH
Confidence 1 5899998 79 66664 45778888888887744
No 12
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.91 E-value=3.7e-22 Score=189.93 Aligned_cols=240 Identities=17% Similarity=0.213 Sum_probs=166.8
Q ss_pred chHHHHHHHHCCCeEEEeCCCCC-------CCc--------CCCccEEEEccCChhH-HHHHHHHHHhCCCceecCh-HH
Q 047754 26 QPSLITKATEQGIGLIRIDPDKP-------LTE--------QGPFDCIMHKLYGPDW-TQQLQQFSSRNPDVRIIDP-PE 88 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~-------l~~--------q~~~DvilhK~~~~~~-~~~l~~~~~~~p~v~viDp-~~ 88 (330)
...++++++++|++++.|+.+.. +.+ ...+|+++.-+.+... ...++..++. -|++++.+ +.
T Consensus 20 ~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~-~gip~~g~~~~ 98 (315)
T TIGR01205 20 AAAVLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGEDGTIQGLLEL-MGIPYTGSGVL 98 (315)
T ss_pred HHHHHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCCcHHHHHHHH-cCCCccCCCHH
Confidence 35578999999999999999862 111 1468999986543211 1234454544 48999986 89
Q ss_pred HHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEec-Cchhhhhh--HHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeC
Q 047754 89 SIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVS-ETELVTRD--MAIEELKLRFPLIAKPLEANGSDKSHQMYLIFD 165 (330)
Q Consensus 89 ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~-~~~~~~~~--~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~ 165 (330)
++..+.||..+.+.|.+ .|||+|++..+. +.++...+ ..+ ...++||+|+||..++ +|.|+.++.|
T Consensus 99 ~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~~~~~~~~~~~~~-~~~~~~P~vvKP~~~~---~s~Gv~~v~~ 167 (315)
T TIGR01205 99 ASALSMDKLLTKLLWKA-------LGLPTPDYIVLTQNRASADELECEQV-AEPLGFPVIVKPAREG---SSVGVSKVKS 167 (315)
T ss_pred HHHHHHCHHHHHHHHHH-------CCCCCCCEEEEecccccchhhhHHHH-HHhcCCCEEEEeCCCC---CccCEEEECC
Confidence 99999999999999986 899999999987 54332211 011 2568999999999864 3589999999
Q ss_pred hhhhhcC-------CCCeEEEecccCCCeEEEEEEEC-CeEEEEE-eecCCCcchhhhhccCcccccCCcccCCCCCccc
Q 047754 166 NEGLEVL-------EAPILLQEFVNHGGIIFKVYVAG-SSVKCVK-RKSLPDISEEKMKSLKGFLPFSQISSNSVDADEE 236 (330)
Q Consensus 166 ~~~L~~l-------~~p~vvQefI~h~g~~~Kv~ViG-~~v~~~~-R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~ 236 (330)
.++|... ..++++|||| .|++|.|.|+| ++..... +.... ..+++|.. ++..+..
T Consensus 168 ~~el~~~~~~~~~~~~~~lvEe~i--~G~e~~v~vi~~~~~~~~~~~~~~~----------~~~~~~~~--~~~~~~~-- 231 (315)
T TIGR01205 168 EEELQAALDEAFEYDEEVLVEQFI--KGRELEVSILGNEEALPIIEIVPEI----------EGFYDYEA--KYLDGST-- 231 (315)
T ss_pred HHHHHHHHHHHHhcCCcEEEEcCC--CCEEEEEEEECCCCccceEEecCCC----------CCeeCccc--ccCCCCe--
Confidence 9888642 5689999999 49999999999 5432221 11100 00223332 3322211
Q ss_pred cccccCCCCc--hHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeeEEEEeeCCCCCCCCC
Q 047754 237 VDLEKTEMPR--EGFVVELSRALREALGL-NLFNFDLIRDAGERDGYLVIDINYLPGYAKLP 295 (330)
Q Consensus 237 ~~~~~~~~~~--~~~~~~lA~~~~~~LGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~ 295 (330)
....+..+++ .++++++|.++.++||+ ++++||++++. +| .++|+|||..||+....
T Consensus 232 ~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~viEvN~~pg~~~~s 291 (315)
T TIGR01205 232 EYVIPAPLDEELEEKIKELALKAYKALGCRGLARVDFFLDE-EG-EIYLNEINTIPGMTAIS 291 (315)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeC-CC-CEEEEEeeCCCCCCCcc
Confidence 1111222222 45789999999999999 58899999985 34 37999999999998753
No 13
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.90 E-value=4e-22 Score=203.62 Aligned_cols=243 Identities=15% Similarity=0.241 Sum_probs=165.9
Q ss_pred Ccc--hHHHHHHHHCCCeEEEeCCCCCCCcCC-CccEEEEccCChhHHHHHHHHHHhCCCceecChHHHHHHhcCHHHHH
Q 047754 24 VIQ--PSLITKATEQGIGLIRIDPDKPLTEQG-PFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDPPESIERLHNRDSML 100 (330)
Q Consensus 24 ~~~--~~l~~~~~~~Gi~~~~id~~~~l~~q~-~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~~~ 100 (330)
++. +.++++|+++|++++.+|.+..+-.-+ .-+.++.+ + ....++++.++..|.||..+.
T Consensus 240 l~~y~~~Ii~~a~~~Gi~~~~~~se~~~~~L~~g~~~~~~~---------------~--s~~~~~s~~ai~~~~DK~~tk 302 (547)
T TIGR03103 240 LNPYARIIVDEARRRGIEVEVLDAEGGLFRLSLGGRSIRCR---------------E--SLSELTSAVAMSLCDDKRLTR 302 (547)
T ss_pred cCHHHHHHHHHHHHcCCcEEEECCCCCEEEecCCceEEEEE---------------e--ccCCCCCHHHHHHhcCHHHHH
Confidence 544 779999999999999988653221100 11121111 1 233677999999999999999
Q ss_pred HHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEE-EeChhhhhc-------C
Q 047754 101 EVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYL-IFDNEGLEV-------L 172 (330)
Q Consensus 101 ~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i-v~~~~~L~~-------l 172 (330)
++|++ .|||+|++..+.+.+.... .+ ..++ |+|+||..| + ++.||.+ +.++++|.+ .
T Consensus 303 ~lL~~-------aGIpVP~~~~~~~~~~~~~--~~--~~~G-~vVVKP~~G--~-~G~Gv~v~v~~~~eL~~a~~~a~~~ 367 (547)
T TIGR03103 303 RLVSE-------AGLQVPEQQLAGNGEAVEA--FL--AEHG-AVVVKPVRG--E-QGKGISVDVRTPDDLEAAIAKARQF 367 (547)
T ss_pred HHHHH-------cCcCCCCEEEECCHHHHHH--HH--HHhC-CEEEEECCC--C-CCcCeEEecCCHHHHHHHHHHHHhc
Confidence 99986 8999999999887655432 23 3455 799999885 3 6789997 899988864 2
Q ss_pred CCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhh------h---h---cc--Cc------------------c
Q 047754 173 EAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEK------M---K---SL--KG------------------F 220 (330)
Q Consensus 173 ~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~------~---~---~~--~g------------------~ 220 (330)
...+++|+|| .|.+||++|||+++++++++-.+.+-.+. + + +. .+ -
T Consensus 368 ~~~vlvEe~i--~G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g 445 (547)
T TIGR03103 368 CDRVLLERYV--PGEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAG 445 (547)
T ss_pred CCcEEEEEec--cCCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcC
Confidence 4589999999 59999999999999987755434321100 0 0 00 00 0
Q ss_pred cccCC------------cccCCCCCccccccccCCCCchHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeeEEEEeeCC
Q 047754 221 LPFSQ------------ISSNSVDADEEVDLEKTEMPREGFVVELSRALREALGLNLFNFDLIRDAGERDGYLVIDINYL 288 (330)
Q Consensus 221 ~~f~~------------~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LGl~l~GvDvi~~~~~g~~~~ViEVN~f 288 (330)
+++++ -+|++.|+. .....-...+.+.++|.++++++||.+.|||++.++.++..|+|||||..
T Consensus 446 ~~~~~V~~~G~~v~l~~~~Nl~tGg~----~~dvtd~~~~~~~~~A~~aa~~~gl~~~GvD~i~~~~~~p~~~iiEvN~~ 521 (547)
T TIGR03103 446 LDLDDVLPEGQRLRVRRTANLHTGGT----IHDVTEQLHPDLREAAERAARALDIPVVGIDFLVPDVTGPDYVIIEANER 521 (547)
T ss_pred CCccccCCCCCEEEEecCCcccCCCe----eEecccccCHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCeEEEEecCC
Confidence 11111 125555532 22221123567889999999999999999999997644445899999999
Q ss_pred CCCCCCCC--cHHHHHHH
Q 047754 289 PGYAKLPG--YETLLMDF 304 (330)
Q Consensus 289 Pg~~g~~~--~~~~l~~~ 304 (330)
||+.+... ..+.++|+
T Consensus 522 Pgl~~h~~~~~~~~~~d~ 539 (547)
T TIGR03103 522 PGLANHEPQPTAERFIDL 539 (547)
T ss_pred ccccccCCCchHHHHHHH
Confidence 99998832 44444443
No 14
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.90 E-value=1.6e-21 Score=184.98 Aligned_cols=245 Identities=17% Similarity=0.219 Sum_probs=170.0
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCC----cCCCccEEEEccCChhH-HHHHHHHHHhCCCceecCh-HHHHHHhcCHHHHH
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLT----EQGPFDCIMHKLYGPDW-TQQLQQFSSRNPDVRIIDP-PESIERLHNRDSML 100 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~----~q~~~DvilhK~~~~~~-~~~l~~~~~~~p~v~viDp-~~ai~~~~dR~~~~ 100 (330)
..+.++.++.|++++.++....+. ....+|+++..+.+... ...++.+++.+ |++++.+ +.++..|+||..+.
T Consensus 22 ~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~~-gip~~G~~~~a~~i~~DK~~~k 100 (299)
T PRK14571 22 ERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDFL-GIRYTGSDAFSSMICFDKLLTY 100 (299)
T ss_pred HHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHHc-CCCccCCCHHHHHHHcCHHHHH
Confidence 336788899999999999876432 23578999998866421 13566666554 8999965 89999999999999
Q ss_pred HHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC-------C
Q 047754 101 EVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL-------E 173 (330)
Q Consensus 101 ~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------~ 173 (330)
++|+ .+|++|++..+.+.. ....++||+|+||..++ +|.|+.++.+.++|.+. .
T Consensus 101 ~~l~--------~~ip~p~~~~~~~~~--------~~~~l~~P~vvKP~~g~---~s~Gv~~v~~~~el~~~~~~~~~~~ 161 (299)
T PRK14571 101 RFLK--------GTVEIPDFVEIKEFM--------KTSPLGYPCVVKPRREG---SSIGVFICESDEEFQHALKEDLPRY 161 (299)
T ss_pred HHHh--------cCCCCCCEEEEechh--------hhhhcCCCEEEecCCCC---CcCCEEEECCHHHHHHHHHHHHhhC
Confidence 8886 369999999885421 12568999999999864 35899999999888642 3
Q ss_pred CCeEEEecccCCCeEEEEEEECCe----EEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCc--h
Q 047754 174 APILLQEFVNHGGIIFKVYVAGSS----VKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--E 247 (330)
Q Consensus 174 ~p~vvQefI~h~g~~~Kv~ViG~~----v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~ 247 (330)
.++++||||+ |+++.|.|+|+. +....... + ...+++|.. ++..+... ...+..+++ .
T Consensus 162 ~~vlVEeyI~--G~E~sv~vl~~~~~~~vl~~~e~~-~---------~~~~~~~~~--k~~~g~~~--~~~p~~l~~~~~ 225 (299)
T PRK14571 162 GSVIVQEYIP--GREMTVSILETEKGFEVLPILELR-P---------KRRFYDYVA--KYTKGETE--FILPAPLNPEEE 225 (299)
T ss_pred CcEEEEcccc--ceEEEEEEEcCCCCeeeeceEEEe-c---------CCCcccccc--ccCCCCee--EEeCCCCCHHHH
Confidence 5799999994 899999999863 22111110 0 112333332 33222110 011222322 4
Q ss_pred HHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeeEEEEeeCCCCCCCCCCc----------HHHHHHHHHHHHH
Q 047754 248 GFVVELSRALREALGL-NLFNFDLIRDAGERDGYLVIDINYLPGYAKLPGY----------ETLLMDFFLNVAK 310 (330)
Q Consensus 248 ~~~~~lA~~~~~~LGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~----------~~~l~~~i~~~~~ 310 (330)
+.++++|.++.++||+ ++++||+++++ + .+||+|||..||+++...+ +..|++.|++...
T Consensus 226 ~~i~~~a~~~~~~lg~~g~~rvD~~~~~--~-~~~viEiN~~Pg~~~~s~~~~~~~~~G~~~~~li~~ii~~a~ 296 (299)
T PRK14571 226 RLVKETALKAFVEAGCRGFGRVDGIFSD--G-RFYFLEINTVPGLTELSDLPASAKAGGIEFEELVDIIIKSAF 296 (299)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEEEEC--C-cEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5688999999999997 58889999873 3 3799999999999987542 3555555555443
No 15
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.89 E-value=8.5e-21 Score=180.11 Aligned_cols=230 Identities=17% Similarity=0.232 Sum_probs=161.9
Q ss_pred HHHHHHHCCCeEEEeCCCC-CCCc---CCCccEEEEccCChhH-HHHHHHHHHhCCCceecC-hHHHHHHhcCHHHHHHH
Q 047754 29 LITKATEQGIGLIRIDPDK-PLTE---QGPFDCIMHKLYGPDW-TQQLQQFSSRNPDVRIID-PPESIERLHNRDSMLEV 102 (330)
Q Consensus 29 l~~~~~~~Gi~~~~id~~~-~l~~---q~~~DvilhK~~~~~~-~~~l~~~~~~~p~v~viD-p~~ai~~~~dR~~~~~~ 102 (330)
..++.++.|++++.+|.+. .+.. ..++|+++.=+.+... ...++..++.+ |++++- ++.++..|+||+.+.++
T Consensus 27 v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~~-gip~~Gs~~~a~~l~~DK~~~k~~ 105 (296)
T PRK14569 27 VLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALHGEDGENGRVSALLEML-EIKHTSSSMKSSVITMDKMISKEI 105 (296)
T ss_pred HHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEEeCCCCCCCChHHHHHHHHc-CCCeeCCCHHHHHHHHCHHHHHHH
Confidence 5777788999999999873 2211 3468888876544321 24566666554 788775 67999999999999999
Q ss_pred HHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC------CCCe
Q 047754 103 VSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL------EAPI 176 (330)
Q Consensus 103 L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------~~p~ 176 (330)
|.+ +|||+|++..+.+... . ...++||+|+||..++ | |.|+.++.++++|... ..++
T Consensus 106 l~~-------~gIptp~~~~~~~~~~-----~--~~~~~~P~vVKP~~gg-s--s~Gv~~v~~~~eL~~a~~~~~~~~~~ 168 (296)
T PRK14569 106 LMH-------HRMPTPMAKFLTDKLV-----A--EDEISFPVAVKPSSGG-S--SIATFKVKSIQELKHAYEEASKYGEV 168 (296)
T ss_pred HHH-------CCCCCCCeEEEchhhh-----h--HhhcCCCEEEEeCCCC-C--CcCeEEcCCHHHHHHHHHHHHhcCCE
Confidence 986 8999999988764211 1 2568999999999853 3 6899999999998742 2489
Q ss_pred EEEecccCCCeEEEEEEECCeEEE-EEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHH
Q 047754 177 LLQEFVNHGGIIFKVYVAGSSVKC-VKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVEL 253 (330)
Q Consensus 177 vvQefI~h~g~~~Kv~ViG~~v~~-~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~l 253 (330)
++|||| .|++|.|.|+|+.... ....+.. .+++|.. ++...+ ....+..+++ .++++++
T Consensus 169 lvEefI--~G~E~tv~vl~~~~~~~~~i~~~~-----------~~~~~~~--k~~~~~---~~~~P~~l~~~~~~~i~~~ 230 (296)
T PRK14569 169 MIEQWV--TGKEITVAIVNDEVYSSVWIEPQN-----------EFYDYES--KYSGKS---IYHSPSGLCEQKELEVRQL 230 (296)
T ss_pred EEEccc--ccEEEEEEEECCcCcceEEEecCC-----------CcCChhh--ccCCCc---EEEeCCCCCHHHHHHHHHH
Confidence 999999 5899999999987532 2221111 1233322 221110 0011222222 4678999
Q ss_pred HHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCCCC
Q 047754 254 SRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKLPG 296 (330)
Q Consensus 254 A~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~ 296 (330)
|.++.++||+. +++||++++. +|+ +||+|||..||+++...
T Consensus 231 a~~~~~~Lg~~G~~rvD~~~~~-~g~-~~vlEIN~~Pg~t~~s~ 272 (296)
T PRK14569 231 AKKAYDLLGCSGHARVDFIYDD-RGN-FYIMEINSSPGMTDNSL 272 (296)
T ss_pred HHHHHHHhCCceEEEEEEEEcC-CCC-EEEEEeeCCCCCCCcCH
Confidence 99999999986 6679999974 454 79999999999987643
No 16
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.88 E-value=3.9e-21 Score=187.46 Aligned_cols=236 Identities=14% Similarity=0.133 Sum_probs=162.1
Q ss_pred CccEEEEccCChhHH-HHHHHHHHhCCCceecChH-HHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCch---h
Q 047754 54 PFDCIMHKLYGPDWT-QQLQQFSSRNPDVRIIDPP-ESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETE---L 128 (330)
Q Consensus 54 ~~DvilhK~~~~~~~-~~l~~~~~~~p~v~viDp~-~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~---~ 128 (330)
++|+++.-+.+.... ..+|.+++. -|++.+.+. .+...++||..+.++|++ +|||||++..+...+ +
T Consensus 87 ~~D~vf~~lhG~~GEdg~iqglle~-~giPy~Gs~~~asal~~DK~~tK~~l~~-------~GIpt~p~~~~~~~~~~~~ 158 (364)
T PRK14570 87 EIDVVFPIVHGRTGEDGAIQGFLKV-MDIPCVGAGILGSAISINKYFCKLLLKS-------FNIPLVPFIGFRKYDYFLD 158 (364)
T ss_pred CCCEEEEcCCCCCCCcCHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHH-------cCCCCCCEEEEeccccccc
Confidence 589999877654221 366677655 489999977 699999999999999986 899999998876532 1
Q ss_pred hhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhc-------CCCCeEEEecccCCCeEEEEEEECCeEEEE
Q 047754 129 VTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEV-------LEAPILLQEFVNHGGIIFKVYVAGSSVKCV 201 (330)
Q Consensus 129 ~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~ 201 (330)
...........++||+|+||..+ || |.|+.++.+.++|.. ++..+++||||. |+++.|.|+|+....+
T Consensus 159 ~~~~~~~~~~~lg~PviVKP~~~-Gs--S~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~--GrEi~v~Vlg~~~~~v 233 (364)
T PRK14570 159 KEGIKKDIKEVLGYPVIVKPAVL-GS--SIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE--AREIECSVIGNEQIKI 233 (364)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCC-CC--CCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC--CEEEEEEEECCCCceE
Confidence 11111112356899999999885 44 579999999988875 256899999995 9999999999853111
Q ss_pred EeecCCCcchhhhhcc-CcccccCCcccCCC--CCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCC
Q 047754 202 KRKSLPDISEEKMKSL-KGFLPFSQISSNSV--DADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAG 275 (330)
Q Consensus 202 ~R~S~~~~~~~~~~~~-~g~~~f~~~s~~~~--~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~ 275 (330)
+|. ++.... .++|+|+. |+.. +... ....++.+++ .++++++|.++.++||+. ++.||++++..
T Consensus 234 ----~~~---~Ei~~~~~~f~dy~~--Ky~~~~~~~~-~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~ 303 (364)
T PRK14570 234 ----FTP---GEIVVQDFIFYDYDA--KYSTIPGNSI-VFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARIDFLIEKD 303 (364)
T ss_pred ----eee---EEEEeCCCCccCHHH--hcCCCCCCce-EEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEECC
Confidence 111 111111 24566654 4431 1110 0112333433 468999999999999996 55699999853
Q ss_pred CCCeeEEEEeeCCCCCCCCCC----------cHHHHHHHHHHHHHhcc
Q 047754 276 ERDGYLVIDINYLPGYAKLPG----------YETLLMDFFLNVAKSKA 313 (330)
Q Consensus 276 ~g~~~~ViEVN~fPg~~g~~~----------~~~~l~~~i~~~~~~~~ 313 (330)
+|+ +||+|||..||++.... -+..|++.|++...+++
T Consensus 304 ~g~-~yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a~~r~ 350 (364)
T PRK14570 304 TGL-IYLNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNLIDLAFQSY 350 (364)
T ss_pred CCc-EEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 354 79999999999998743 24666677766554433
No 17
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.88 E-value=8.2e-21 Score=183.03 Aligned_cols=239 Identities=16% Similarity=0.229 Sum_probs=167.7
Q ss_pred HHHHHHHCCCeEEEeCCCCC------------CC---------------cCC--CccEEEEccCChhH-HHHHHHHHHhC
Q 047754 29 LITKATEQGIGLIRIDPDKP------------LT---------------EQG--PFDCIMHKLYGPDW-TQQLQQFSSRN 78 (330)
Q Consensus 29 l~~~~~~~Gi~~~~id~~~~------------l~---------------~q~--~~DvilhK~~~~~~-~~~l~~~~~~~ 78 (330)
..++.++.|+++.+||++++ +. ... .+|+++.=+.+... ...++.+++.
T Consensus 27 v~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gedg~iq~lle~- 105 (333)
T PRK01966 27 VLKALDKEKYEVVPIGITKDGRWYLIDADNMELADDDNDKEDLSLLILPSGGSEEVDVVFPVLHGPPGEDGTIQGLLEL- 105 (333)
T ss_pred HHHHhcccCCEEEEEEECCCCCEeeccchhhhcccccccccccchhccccccCccCCEEEEccCCCCCCCcHHHHHHHH-
Confidence 56667788999999988864 00 011 58999877654311 1346666655
Q ss_pred CCceecCh-HHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhh-hhhHHHHHhcCCCcEEEeeCCCCCCCC
Q 047754 79 PDVRIIDP-PESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELV-TRDMAIEELKLRFPLIAKPLEANGSDK 156 (330)
Q Consensus 79 p~v~viDp-~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~-~~~~~l~~~~l~fP~VvKp~~a~Gs~~ 156 (330)
-|++.+-+ ..+...++||..+.++|.+ .|||+|++..+.+.+.. ..+..+ ...++||+|+||..++ |
T Consensus 106 ~gipy~G~~~~a~~l~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~~~~~~-~~~~~~P~vVKP~~~g-s-- 174 (333)
T PRK01966 106 LGIPYVGCGVLASALSMDKILTKRLLAA-------AGIPVAPYVVLTRGDWEEASLAEI-EAKLGLPVFVKPANLG-S-- 174 (333)
T ss_pred cCCCccCCCHHHHHHHhCHHHHHHHHHH-------cCCCCCCEEEEeccccchhhHHHH-HHhcCCCEEEEeCCCC-C--
Confidence 48998864 7899999999999999986 79999999998765442 111122 3578999999999864 3
Q ss_pred CcceEEEeChhhhhc-------CCCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccC
Q 047754 157 SHQMYLIFDNEGLEV-------LEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSN 229 (330)
Q Consensus 157 sh~m~iv~~~~~L~~-------l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~ 229 (330)
|.|+.++.+.++|.. .+..+++|+||+ |+++.|.|+|+... . ++. +++....++|+|+. ++
T Consensus 175 S~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~--G~E~~v~vl~~~~~----~-~~~---~ei~~~~~~~d~~~--ky 242 (333)
T PRK01966 175 SVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK--GREIECAVLGNDPK----A-SVP---GEIVKPDDFYDYEA--KY 242 (333)
T ss_pred ccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC--CEEEEEEEECCCCe----E-ccc---EEEecCCceEcHHH--cc
Confidence 589999999988865 357899999995 89999999996311 0 111 11211123555554 55
Q ss_pred CCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCCC
Q 047754 230 SVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKLP 295 (330)
Q Consensus 230 ~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~ 295 (330)
..+.. ....+..+++ .+.++++|.++.++||+. ++.+|++++. +|+ +||+|||..||++...
T Consensus 243 ~~~~~--~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-~g~-~~vlEiNt~Pg~t~~s 307 (333)
T PRK01966 243 LDGSA--ELIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTE-DGE-IYLNEINTMPGFTPIS 307 (333)
T ss_pred CCCCc--eEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcC-CCC-EEEEEeeCCCCCCccc
Confidence 33321 1112333333 567899999999999995 6679999975 454 7999999999998864
No 18
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.87 E-value=2.1e-20 Score=181.12 Aligned_cols=211 Identities=18% Similarity=0.230 Sum_probs=145.9
Q ss_pred HHHHHHHhCCCceecC-hHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchh---h-hhhHHHHHhcCCCcE
Q 047754 70 QLQQFSSRNPDVRIID-PPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETEL---V-TRDMAIEELKLRFPL 144 (330)
Q Consensus 70 ~l~~~~~~~p~v~viD-p~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~---~-~~~~~l~~~~l~fP~ 144 (330)
.++.+++. -|++++- ++.++..|+||+.|.++|.+ +||++|++..+.+.+. . .....+ ..++||+
T Consensus 105 ~iq~~le~-~gipy~Gs~~~a~~i~~DK~~~k~~l~~-------~GI~~p~~~~~~~~~~~~~~~~~~~~~--~~l~~Pv 174 (347)
T PRK14572 105 RIQGFLDT-LGIPYTGSGVLASALAMDKTRANQIFLQ-------SGQKVAPFFELEKLKYLNSPRKTLLKL--ESLGFPQ 174 (347)
T ss_pred HHHHHHHH-cCcCcCCCCHHHHHHHhCHHHHHHHHHH-------cCCCCCCEEEEEccccccChHHHHHHH--HhcCCCE
Confidence 46666654 4899885 58899999999999999986 8999999998865321 1 111112 4689999
Q ss_pred EEeeCCCCCCCCCcceEEEeChhhhhcC-------CCCeEEEecccCCCeEEEEEEECC----eEEEEEeecCCCcchhh
Q 047754 145 IAKPLEANGSDKSHQMYLIFDNEGLEVL-------EAPILLQEFVNHGGIIFKVYVAGS----SVKCVKRKSLPDISEEK 213 (330)
Q Consensus 145 VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~vvQefI~h~g~~~Kv~ViG~----~v~~~~R~S~~~~~~~~ 213 (330)
|+||..+ |+ |.|+.++.+.++|... +.++++|||| .|++|.|.|+|+ ++... .+|-. +
T Consensus 175 vVKP~~g-gs--S~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI--~G~E~sv~vi~~~~~g~~~~~---~l~~~---e 243 (347)
T PRK14572 175 FLKPVEG-GS--SVSTYKITNAEQLMTLLALIFESDSKVMSQSFL--SGTEVSCGVLERYRGGKRNPI---ALPAT---E 243 (347)
T ss_pred EEecCCC-CC--CCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCc--ccEEEEEEEEeCccCCCCCce---ecccE---E
Confidence 9999985 33 5899999999988652 4689999999 589999999973 32100 01110 1
Q ss_pred hhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 214 MKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 214 ~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
.....++|+|.+ |+..++.. ...++.+++ .++++++|.++.++||+. +.++|+++++ + .+||+|||..||
T Consensus 244 i~~~~~~~d~~~--ky~~~~~~--~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~--~-~~~vlEiNt~PG 316 (347)
T PRK14572 244 IVPGGEFFDFES--KYKQGGSE--EITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIVD--G-EPHILETNTLPG 316 (347)
T ss_pred EecCCCccCHHH--ccCCCCeE--EEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEEC--C-cEEEEeeeCCCC
Confidence 111124556655 66544221 112333332 457899999999999998 6679999973 3 378999999999
Q ss_pred CCCCCCc----------HHHHHHHHHHH
Q 047754 291 YAKLPGY----------ETLLMDFFLNV 308 (330)
Q Consensus 291 ~~g~~~~----------~~~l~~~i~~~ 308 (330)
+++..-+ +..|++.|++.
T Consensus 317 ~t~~S~~p~~~~~~G~~~~~l~~~ii~~ 344 (347)
T PRK14572 317 MTETSLIPQQAKAAGINMEEVFTDLIEI 344 (347)
T ss_pred CCcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9987432 35555555544
No 19
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.87 E-value=2.8e-20 Score=195.72 Aligned_cols=236 Identities=16% Similarity=0.202 Sum_probs=160.9
Q ss_pred ccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC---CccEEEEccCChhHHHHHHHHHHhCCCceecChHHHHHHhcCHHH
Q 047754 22 QTVIQPSLITKATEQGIGLIRIDPDKPLTEQG---PFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDPPESIERLHNRDS 98 (330)
Q Consensus 22 ~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~---~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~ 98 (330)
-.+.+..++++|+++|+++..+|.+..+...+ ..+.++. ......|+..+...+.||..
T Consensus 430 ~~~sT~~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~------------------~~~t~~~s~~s~~~~~DK~~ 491 (752)
T PRK02471 430 MELSTQILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKN------------------GNMTSKDNYISPLIMENKVV 491 (752)
T ss_pred CChhHHHHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEe------------------ccccCCCHHHHHHHhhCHHH
Confidence 34556789999999999999999875433211 1222111 13567888899999999999
Q ss_pred HHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeC---hhhhhc----
Q 047754 99 MLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFD---NEGLEV---- 171 (330)
Q Consensus 99 ~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~---~~~L~~---- 171 (330)
|.++|++ +|||+|++.++.+.+.... .+ ..-.+||+|+||..++ +|.|+.++.+ .+++.+
T Consensus 492 tk~lL~~-------~GIpvP~~~~~~~~e~a~~--~~-~~~~g~PvVVKP~~g~---~G~GV~~~~~~~~~eel~~A~~~ 558 (752)
T PRK02471 492 TKKILAE-------AGFPVPAGDEFTSLEEALA--DY-SLFADKAIVVKPKSTN---FGLGISIFKEPASLEDYEKALEI 558 (752)
T ss_pred HHHHHHH-------CCcCCCCEEEEcCHHHHHH--HH-HHhcCCCEEEEECCCC---CcCCeEEecCcCCHHHHHHHHHH
Confidence 9999986 8999999999987655432 22 2224899999999853 5689988654 555543
Q ss_pred ---CCCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhc---------c-----Ccc--------------
Q 047754 172 ---LEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKS---------L-----KGF-------------- 220 (330)
Q Consensus 172 ---l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~---------~-----~g~-------------- 220 (330)
.+..+++|||| .|++|+|+|+|++++++.++..+++..++..+ . .+.
T Consensus 559 a~~~~~~vlVEEfI--~G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~ 636 (752)
T PRK02471 559 AFREDSSVLVEEFI--VGTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIER 636 (752)
T ss_pred HHhcCCcEEEEecc--cCCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHH
Confidence 25689999999 59999999999999987766545543222110 0 000
Q ss_pred -------cccCC------------cccCCCCCccccccccCCCCchHHHHHHHHHHHHHhCCcEEEEEEEEeCCCC----
Q 047754 221 -------LPFSQ------------ISSNSVDADEEVDLEKTEMPREGFVVELSRALREALGLNLFNFDLIRDAGER---- 277 (330)
Q Consensus 221 -------~~f~~------------~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LGl~l~GvDvi~~~~~g---- 277 (330)
+.+++ -+|+..| |+.....-...+...++|.++++++|+.++|||++.++-+.
T Consensus 637 ~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstG----g~~~dvtd~ih~~~~~lA~~aa~~igl~~~GvDii~~di~~p~~~ 712 (752)
T PRK02471 637 LMLKQQGLTPDSIPKKGEIVYLRENSNISTG----GDSIDMTDDMDDSYKQIAVKAAKALGAKICGVDLIIPDLTQPASP 712 (752)
T ss_pred HHHHHcCCCccccCCCCCEEEecCCCccCCC----CeeEecccccCHHHHHHHHHHHHhcCCCEEEEEEEeCCCcccccc
Confidence 11111 1122222 22111111135678899999999999999999999985211
Q ss_pred C--eeEEEEeeCCCCCCCC
Q 047754 278 D--GYLVIDINYLPGYAKL 294 (330)
Q Consensus 278 ~--~~~ViEVN~fPg~~g~ 294 (330)
. .+.|||||..||+...
T Consensus 713 ~~~~~~IiEvN~~P~l~mH 731 (752)
T PRK02471 713 EHPNYGIIELNFNPAMYMH 731 (752)
T ss_pred cCCCeEEEEecCCCchhhc
Confidence 1 4789999999997655
No 20
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.87 E-value=3.5e-20 Score=179.30 Aligned_cols=236 Identities=18% Similarity=0.254 Sum_probs=164.3
Q ss_pred HHHHHHHCCCeEEEeCCCCC------------C--------------------C------cCCCccEEEEccCChhH-HH
Q 047754 29 LITKATEQGIGLIRIDPDKP------------L--------------------T------EQGPFDCIMHKLYGPDW-TQ 69 (330)
Q Consensus 29 l~~~~~~~Gi~~~~id~~~~------------l--------------------~------~q~~~DvilhK~~~~~~-~~ 69 (330)
..++.++.|+++.+||+++. + . ....+|+++.-+.+... ..
T Consensus 27 v~~~l~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~lhG~~gedg 106 (343)
T PRK14568 27 VARNLDTEKYEPFYIGITKSGVWKLCDGPCAEWENGSCRPAVLSPDRKVHGLLVLEQGEYETIRLDVVFPVLHGKLGEDG 106 (343)
T ss_pred HHHhhcccCCeEEEEEECCCCcEEeCCccccccccccccceeeccccccccccccCccccccccCCEEEEcCCCCCCCch
Confidence 56667778999999987763 0 0 01247888877765321 24
Q ss_pred HHHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEee
Q 047754 70 QLQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKP 148 (330)
Q Consensus 70 ~l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp 148 (330)
.++.+++. .|++.+ .++.+...|+||..+.++|++ .||++|++..+.+.+... ...++||+|+||
T Consensus 107 ~iq~lle~-~gipy~G~~~~asai~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~------~~~l~~P~iVKP 172 (343)
T PRK14568 107 AIQGLLEL-SGIPYVGCDIQSSALCMDKSLAYIVAKN-------AGIATPAFWTVTADERPD------AATLTYPVFVKP 172 (343)
T ss_pred HHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-------cCcCcCCEEEEECCchhh------hhhcCCCEEEEe
Confidence 56777755 488888 468899999999999999986 799999999987654321 246899999999
Q ss_pred CCCCCCCCCcceEEEeChhhhhc-------CCCCeEEEecccCCCeEEEEEEECCeE--EEEEeecCCCcchhhhhccCc
Q 047754 149 LEANGSDKSHQMYLIFDNEGLEV-------LEAPILLQEFVNHGGIIFKVYVAGSSV--KCVKRKSLPDISEEKMKSLKG 219 (330)
Q Consensus 149 ~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQefI~h~g~~~Kv~ViG~~v--~~~~R~S~~~~~~~~~~~~~g 219 (330)
..+ || |.|+.++.+.++|.. ++..+++|||| .|+++.|.|+|+.- .+... .++....+
T Consensus 173 ~~~-gs--S~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I--~G~E~sv~vl~~~~~~~~~~~--------~~i~~~~~ 239 (343)
T PRK14568 173 ARS-GS--SFGVSKVNSADELDYAIESARQYDSKVLIEEAV--VGSEVGCAVLGNGADLVVGEV--------DQIRLSHG 239 (343)
T ss_pred CCC-CC--CCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCc--CCEEEEEEEEcCCCCcceecc--------eEEecCCC
Confidence 986 34 689999999999864 35689999999 48999999998742 11100 01111124
Q ss_pred ccccCCcccCCC--CCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 220 FLPFSQISSNSV--DADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 220 ~~~f~~~s~~~~--~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
+|+++. ++.. +........++.+++ .++++++|.++.++||+. ++.+|++++. +|. +||+|||..||++..
T Consensus 240 ~~~~~~--k~~~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~-~g~-~~llEINt~Pg~t~~ 315 (343)
T PRK14568 240 FFRIHQ--ENEPEKGSENSTIIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFLQE-DGT-VVLNEVNTLPGFTSY 315 (343)
T ss_pred ccchhh--hhccccCCCCeeEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeC-CCC-EEEEEeeCCCCCCcc
Confidence 455443 2211 100001123344443 467899999999999995 7779999985 454 799999999999876
Q ss_pred C
Q 047754 295 P 295 (330)
Q Consensus 295 ~ 295 (330)
.
T Consensus 316 S 316 (343)
T PRK14568 316 S 316 (343)
T ss_pred C
Confidence 4
No 21
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.86 E-value=3.4e-20 Score=195.09 Aligned_cols=231 Identities=17% Similarity=0.301 Sum_probs=158.1
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCCcCCCccEEEEccCChhHHHHHHHHHHhCCCceecChHHHHHHhcCHHHHHHHHHhh
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDPPESIERLHNRDSMLEVVSRL 106 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~~q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~ 106 (330)
..++++|.++|+.+..++-. .+ +|=-.+.. ..+++.. ...-++..++..+.||..+.++|++
T Consensus 163 ~~I~~~A~~~gi~~~~l~~~-~~---------v~lgyG~~-~~~i~~~------~~~~~s~~a~~i~~DK~~tk~lL~~- 224 (727)
T PRK14016 163 AAIVDAAEARGIPYIRLGDG-SL---------VQLGYGKY-QRRIQAA------ETDQTSAIAVDIACDKELTKRLLAA- 224 (727)
T ss_pred HHHHHHHHHcCCCEEEeCCC-Ce---------EecCCcHH-HHHHHHh------cCCCCcHHHHHHhCCHHHHHHHHHH-
Confidence 46889999999999887643 11 11111111 1122211 2237788999999999999999986
Q ss_pred hhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEE-EeChhhhhcC-------CCCeEE
Q 047754 107 KIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYL-IFDNEGLEVL-------EAPILL 178 (330)
Q Consensus 107 ~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i-v~~~~~L~~l-------~~p~vv 178 (330)
.|||+|++..+.+.++... .. ..++||+|+||..+ + ++.||.+ +.++++|.+. ..++++
T Consensus 225 ------~GIPvP~~~~v~s~~~a~~--~a--~~iG~PvVVKP~~G--~-~G~GV~~~v~~~~el~~a~~~a~~~~~~viV 291 (727)
T PRK14016 225 ------AGVPVPEGRVVTSAEDAWE--AA--EEIGYPVVVKPLDG--N-HGRGVTVNITTREEIEAAYAVASKESSDVIV 291 (727)
T ss_pred ------CCcCCCCeeEeCCHHHHHH--HH--HHcCCCEEEEECCC--C-CCCceEEecCCHHHHHHHHHHHHHhCCeEEE
Confidence 8999999999888766532 23 56899999999884 3 5789998 8999888642 468999
Q ss_pred EecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhh------------c------------------------------
Q 047754 179 QEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMK------------S------------------------------ 216 (330)
Q Consensus 179 QefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~------------~------------------------------ 216 (330)
|+||+ |++|||+|+|++++++.|+..+.+..++.. +
T Consensus 292 Ee~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~ 369 (727)
T PRK14016 292 ERYIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTL 369 (727)
T ss_pred EEecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCc
Confidence 99995 899999999999998888755543111000 0
Q ss_pred ----cCcc-cccCCcccCCCCCccccccccCCCCchHHHHHHHHHHHHHhCCcEEEEEEEEeCC----CCCeeEEEEeeC
Q 047754 217 ----LKGF-LPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRALREALGLNLFNFDLIRDAG----ERDGYLVIDINY 287 (330)
Q Consensus 217 ----~~g~-~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LGl~l~GvDvi~~~~----~g~~~~ViEVN~ 287 (330)
..|. +.+..-.|+..|+. .....-...+...++|.++++++|++++|||++.++- .+..+.|||||.
T Consensus 370 ~sV~~~G~~v~l~~~~N~s~Gg~----~~d~td~i~~~~~~~a~~aa~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~ 445 (727)
T PRK14016 370 DSVPPKGEKVYLRRNANLSTGGT----AIDVTDEVHPENAAIAERAAKIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNA 445 (727)
T ss_pred cccCCCCCEEEEeccccccCCCe----eEecccccCHHHHHHHHHHHHhcCCCEEEEEEEecCcccccccCCcEEEEEcC
Confidence 0011 11111124444422 1111101256678999999999999999999999741 012368999999
Q ss_pred CCCCCCC
Q 047754 288 LPGYAKL 294 (330)
Q Consensus 288 fPg~~g~ 294 (330)
.||+...
T Consensus 446 sPgi~~~ 452 (727)
T PRK14016 446 APGLRMH 452 (727)
T ss_pred Ccchhhc
Confidence 9999864
No 22
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.83 E-value=1e-19 Score=164.04 Aligned_cols=166 Identities=22% Similarity=0.322 Sum_probs=113.7
Q ss_pred CCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhc-------CCCCeEEEecccCC
Q 047754 113 EKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEV-------LEAPILLQEFVNHG 185 (330)
Q Consensus 113 ~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQefI~h~ 185 (330)
.||+||+++++...+.......-....++||+|+||..+ || |.|+.+|++.++|.. ++.++++|||| +
T Consensus 5 ~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~-Gs--S~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI--~ 79 (203)
T PF07478_consen 5 AGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASE-GS--SIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI--S 79 (203)
T ss_dssp TT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESST-ST--TTTEEEESSHHHHHHHHHHHTTTHSEEEEEE----S
T ss_pred cCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCC-Cc--cEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee--c
Confidence 799999999999876654311112478999999999985 55 789999999998875 36799999999 7
Q ss_pred CeEEEEEEECC---eEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHH
Q 047754 186 GIIFKVYVAGS---SVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREA 260 (330)
Q Consensus 186 g~~~Kv~ViG~---~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~ 260 (330)
|++|.|.|+|+ ++.-... +....++|+|+. |+...........++.+++ .+.++++|.++.++
T Consensus 80 G~E~tv~vl~~~~~~~~~~~e----------i~~~~~~~d~~~--Ky~~~~~~~~~~~pa~l~~~~~~~i~~~a~~a~~~ 147 (203)
T PF07478_consen 80 GREFTVGVLGNGEPRVLPPVE----------IVFPSEFYDYEA--KYQPADSETEYIIPADLSEELQEKIKEIAKKAFKA 147 (203)
T ss_dssp SEEEEEEEEESSSTEEEEEEE----------EEESSSEEEHHH--HHSGCCSCEEEESS-SS-HHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEecCCcccCceEE----------EEcCCCceehhh--eeccCCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999994 4432222 222235667765 5532101001122333333 57899999999999
Q ss_pred hCCcEEE-EEEEEeCCCCCeeEEEEeeCCCCCCCCCCc
Q 047754 261 LGLNLFN-FDLIRDAGERDGYLVIDINYLPGYAKLPGY 297 (330)
Q Consensus 261 LGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg~~g~~~~ 297 (330)
||+.-++ ||+++++ +| .+|++|||..||+.....+
T Consensus 148 lg~~~~~RiD~rv~~-~g-~~~~lEiNt~PGlt~~S~~ 183 (203)
T PF07478_consen 148 LGCRGYARIDFRVDE-DG-KPYFLEINTIPGLTPTSLF 183 (203)
T ss_dssp TTTCSEEEEEEEEET-TT-EEEEEEEESS-G-STTSHH
T ss_pred HcCCCceeEEEEecc-CC-ceEEEeccCcccccCCCHH
Confidence 9998777 9999985 45 4799999999999987554
No 23
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.83 E-value=3.2e-19 Score=190.97 Aligned_cols=231 Identities=16% Similarity=0.277 Sum_probs=158.5
Q ss_pred cchHHHHHHHHCCCeEEEeCCCCCCCc--CCCccEEEEccCChhHHHHHHHHHHhCCCceecChHHHHHHhcCHHHHHHH
Q 047754 25 IQPSLITKATEQGIGLIRIDPDKPLTE--QGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDPPESIERLHNRDSMLEV 102 (330)
Q Consensus 25 ~~~~l~~~~~~~Gi~~~~id~~~~l~~--q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~~~~~ 102 (330)
.+..++++|.++||.+..+|-. .+.. .|..- +++. ....-.|+..++..+.||..+.++
T Consensus 160 st~~i~~~a~~rgip~~~l~~~-~~~qlg~g~~~---~~~~---------------~~~t~~~s~ia~~ia~DK~~tk~l 220 (864)
T TIGR02068 160 STAAIVDEAEKRGIPYMRLSAG-SLVQLGYGSRQ---KRIQ---------------ATETDRTSAIAVEIACDKDLTKEI 220 (864)
T ss_pred cHHHHHHHHHHCCCCEEEECCC-CEEEecCCCEE---EEEE---------------eecCCCCcHHHHHHHcCHHHHHHH
Confidence 4566899999999999999743 2221 11110 0110 012334667899999999999999
Q ss_pred HHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEE-EeChhhhhcC-------CC
Q 047754 103 VSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYL-IFDNEGLEVL-------EA 174 (330)
Q Consensus 103 L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i-v~~~~~L~~l-------~~ 174 (330)
|++ +|||+|++.++.+.++... .. ..++||+|+||..+ + .+.|+.+ +.++++|.+. ..
T Consensus 221 L~~-------~GIpvP~~~~~~s~~ea~~--~~--~~ig~PvVVKP~~g--~-~G~GV~l~v~s~~el~~a~~~a~~~~~ 286 (864)
T TIGR02068 221 LSD-------AGVPVPEGTVVQSAEDAWE--AA--QDLGYPVVIKPYDG--N-HGRGVTINILTRDEIESAYEAAVEESS 286 (864)
T ss_pred HHH-------cCcCCCCEEEECCHHHHHH--HH--HHcCCCEEEEECCC--C-CccCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 986 8999999999988766542 23 56899999999985 3 4689998 8999888652 46
Q ss_pred CeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhh------hhc--------------------------------
Q 047754 175 PILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEK------MKS-------------------------------- 216 (330)
Q Consensus 175 p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~------~~~-------------------------------- 216 (330)
++++|+|| .|++||++|+|++++++.++-.+++..++ +..
T Consensus 287 ~vlVEefI--~G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~ 364 (864)
T TIGR02068 287 GVIVERFI--TGRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQ 364 (864)
T ss_pred cEEEEEec--cCCEEEEEEECCEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHc
Confidence 89999999 48999999999999988766555432211 000
Q ss_pred --------cCcc-cccCCcccCCCCCccccccccCCCCchHHHHHHHHHHHHHhCCcEEEEEEEEeCCC----CCeeEEE
Q 047754 217 --------LKGF-LPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRALREALGLNLFNFDLIRDAGE----RDGYLVI 283 (330)
Q Consensus 217 --------~~g~-~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LGl~l~GvDvi~~~~~----g~~~~Vi 283 (330)
..|. +.+..-+|+..|+. .....-...+...++|.++++++||+++|||++.++-+ +..+.||
T Consensus 365 g~~~~sV~~~g~~v~l~~~~Nls~Gg~----~~d~td~i~~~~~~~a~~aa~~~gl~i~gvD~i~~di~~~~~~~~~~ii 440 (864)
T TIGR02068 365 GLTLDSVPAKGRIVYLRATANLSTGGV----AIDRTDEIHPENAATAVRAAKIIGLDIAGVDIVTEDISRPLRDTDGAIV 440 (864)
T ss_pred CCCccccCCCCCEEEEeccccccCCCc----eEecccccCHHHHHHHHHHHHHhCCCeEEEEEEecCCCCCccccCcEEE
Confidence 0011 11211224544432 11111112556789999999999999999999987411 1235899
Q ss_pred EeeCCCCCCCC
Q 047754 284 DINYLPGYAKL 294 (330)
Q Consensus 284 EVN~fPg~~g~ 294 (330)
|||..||+...
T Consensus 441 EvN~~p~~~~h 451 (864)
T TIGR02068 441 EVNAAPGLRMH 451 (864)
T ss_pred EEcCCcchhhc
Confidence 99999998755
No 24
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.82 E-value=3.1e-18 Score=178.45 Aligned_cols=237 Identities=15% Similarity=0.188 Sum_probs=159.4
Q ss_pred ccCcchHHHHHHHHCCCeEEEeCCCCCCCcCCCccEEEEccCChhHHHHHHHHHHhCCCceecChHHHHHHhcCHHHHHH
Q 047754 22 QTVIQPSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDPPESIERLHNRDSMLE 101 (330)
Q Consensus 22 ~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~~~~ 101 (330)
-.+.++.|+..|-++| .+..+|....+.. ++.-. -++|+++ ..+.-.|+..+...+.||..|-+
T Consensus 418 ~~~stQ~Li~~Ai~rG-~v~vlD~~~~~~~----------L~~g~----~~~~v~~-~s~ts~tS~ia~~i~~DK~~TK~ 481 (737)
T TIGR01435 418 MELSTQWKLFDVIQKG-KVEILDEAEQFLR----------LQKGD----HIEYVKN-ANMTSKDNYVSPLIMENKVVTKK 481 (737)
T ss_pred ccHhHHHHHHHHHHCC-CEEEeCCCCCeeE----------eecCC----cceEEec-ceecCCccHHHHHHhcCHHHHHH
Confidence 3556788999999999 9999988743322 21100 0012211 23566788899999999999999
Q ss_pred HHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcC-CCcEEEeeCCCCCCCCCcceEEEeC---hhhhhc------
Q 047754 102 VVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKL-RFPLIAKPLEANGSDKSHQMYLIFD---NEGLEV------ 171 (330)
Q Consensus 102 ~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l-~fP~VvKp~~a~Gs~~sh~m~iv~~---~~~L~~------ 171 (330)
+|++ +|||||++.++.+.+.... .. ..+ +||+||||..++ .|.|+.++.+ .+++.+
T Consensus 482 iL~~-------aGIPVP~g~~~~~~~~a~~--~~--~~~~g~PVVVKP~~g~---~G~GVsi~~~~~~~eel~~Al~~A~ 547 (737)
T TIGR01435 482 VLAE-------AGFRVPFGDEFSSQALALE--AF--SLFENKAIVVKPKSTN---YGLGITIFKNGFTLEDFQEALNIAF 547 (737)
T ss_pred HHHH-------cCcCCCCEEEECCHHHHHH--HH--HHhcCCCEEEeeCCCC---CcCCeEEecCcCCHHHHHHHHHHHH
Confidence 9986 8999999999987654432 22 234 799999999853 4689999877 455543
Q ss_pred -CCCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhc--------------cCcc----------------
Q 047754 172 -LEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKS--------------LKGF---------------- 220 (330)
Q Consensus 172 -l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~--------------~~g~---------------- 220 (330)
.+..+++|+|| .|++|||+|||++++++.++..+++..++..| ..+.
T Consensus 548 ~~~~~VLVEefI--~G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L 625 (737)
T TIGR01435 548 SEDSSVIIEEFL--PGTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKITGPEETLML 625 (737)
T ss_pred hcCCeEEEEecc--cCCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCcccccchHHHHHH
Confidence 24579999999 59999999999999987766556543332110 0000
Q ss_pred ----cccCC------------cccCCCCCccccccccCCCCchHHHHHHHHHHHHHhCCcEEEEEEEEeCCCC------C
Q 047754 221 ----LPFSQ------------ISSNSVDADEEVDLEKTEMPREGFVVELSRALREALGLNLFNFDLIRDAGER------D 278 (330)
Q Consensus 221 ----~~f~~------------~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LGl~l~GvDvi~~~~~g------~ 278 (330)
+.+++ -+|+..| |+.....-...+..+++|.++++++|+.+.|||+|.++-+. .
T Consensus 626 ~~qg~tldsVp~~Ge~V~Lr~~aNlstG----G~~iDvTd~ihp~~~~lA~~aa~algl~i~GVDii~~di~~p~~~~~~ 701 (737)
T TIGR01435 626 KEQGLTIDSIPKKEQIVYLRENSNVSTG----GDSIDMTDEMDDSYKQIAIRIATAVGAAICGVDLIIPDETIPDTDKHA 701 (737)
T ss_pred HHcCCCccccCCCCCEEEEcCCCcccCC----CceEecccccCHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCcccccc
Confidence 01111 1122222 22111110125667899999999999999999999875221 2
Q ss_pred eeEEEEeeCCCCCCCC
Q 047754 279 GYLVIDINYLPGYAKL 294 (330)
Q Consensus 279 ~~~ViEVN~fPg~~g~ 294 (330)
.+.|||||..||+...
T Consensus 702 ~~~iiEvN~~P~l~mH 717 (737)
T TIGR01435 702 IWGVIEANFNPAMHMH 717 (737)
T ss_pred ceEEEEEcCCcchhhh
Confidence 2689999999997655
No 25
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.81 E-value=1e-18 Score=166.52 Aligned_cols=194 Identities=16% Similarity=0.169 Sum_probs=124.5
Q ss_pred ecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCC-cEEEeeCCCCCCCCCcceE
Q 047754 83 IIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRF-PLIAKPLEANGSDKSHQMY 161 (330)
Q Consensus 83 viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~f-P~VvKp~~a~Gs~~sh~m~ 161 (330)
-.|+-+....|.||+.+..+|++ ++||+|+|.++.+.+.... .+.+.--++ |+|+||+.| | +++|+.
T Consensus 25 ~~N~r~~~~~~~DK~~t~~lL~~-------aglpvP~T~~~~s~~~~~~--~l~~~~~~~~~VVVKPl~G--s-~GrGI~ 92 (317)
T TIGR02291 25 RYNKRSLYPLVDDKLKTKIIAQA-------AGITVPELYGVIHNQAEVK--TIHNIVKDHPDFVIKPAQG--S-GGKGIL 92 (317)
T ss_pred hcCCchhccccccHHHHHHHHHH-------cCCCCCCEEEecCchhhHH--HHHHHHccCCCEEEEECCC--C-CccCeE
Confidence 45788899999999999999986 8999999998888764322 232222256 699999994 5 889999
Q ss_pred EEeChhhhh--------------------------cCCC--CeEEEecccCC-----------CeEEEEEEECCeEEEEE
Q 047754 162 LIFDNEGLE--------------------------VLEA--PILLQEFVNHG-----------GIIFKVYVAGSSVKCVK 202 (330)
Q Consensus 162 iv~~~~~L~--------------------------~l~~--p~vvQefI~h~-----------g~~~Kv~ViG~~v~~~~ 202 (330)
++.+.++.. .+.. ..++|||+..+ ..++||+|+|+++.+++
T Consensus 93 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~~vaa~ 172 (317)
T TIGR02291 93 VITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGYPVMAM 172 (317)
T ss_pred EEEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCEEEEEE
Confidence 997653311 1121 25666776322 37999999999999777
Q ss_pred ee-cCC--Ccchh----hhhc----cCcccccCCc--ccC--CCCCccccccccCCCCchHHHHHHHHHHHHHhCCcEEE
Q 047754 203 RK-SLP--DISEE----KMKS----LKGFLPFSQI--SSN--SVDADEEVDLEKTEMPREGFVVELSRALREALGLNLFN 267 (330)
Q Consensus 203 R~-S~~--~~~~~----~~~~----~~g~~~f~~~--s~~--~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LGl~l~G 267 (330)
++ +.. +|.+| .... .+|.+...-. +.+ +..+ ...-....+|..+++.++|.++.+++|+.++|
T Consensus 173 ~R~~~~~~~~~tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t--~~~~~g~~ip~~~el~~la~~A~~~~g~~~~G 250 (317)
T TIGR02291 173 MRLPTRASDGKANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDT--GKDLSGLQVPHWERLLELAASCWELTGLGYMG 250 (317)
T ss_pred EEccCccCCcccccccCCceeeeecCCCccccccccCCccccCCCc--ccccccCCChhHHHHHHHHHHHHHhcCCCeEE
Confidence 55 321 33322 1100 0111100000 000 0000 00001122344578899999999999999999
Q ss_pred EEEEEeCCCCCeeEEEEeeCCCCCC
Q 047754 268 FDLIRDAGERDGYLVIDINYLPGYA 292 (330)
Q Consensus 268 vDvi~~~~~g~~~~ViEVN~fPg~~ 292 (330)
+|++++.. + +++|+|||..|||+
T Consensus 251 vDii~~~~-~-g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 251 VDMVLDKE-E-GPLVLELNARPGLA 273 (317)
T ss_pred EEEEEeCC-C-CEEEEEeCCCCCCC
Confidence 99999753 3 37999999999998
No 26
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.78 E-value=4.2e-17 Score=174.06 Aligned_cols=262 Identities=13% Similarity=0.123 Sum_probs=178.3
Q ss_pred HHHHHHHCCCeEEEeCCCCCC----C---------------------c-CCCccEEEEccCChhH-HHHHHHHHHhCCCc
Q 047754 29 LITKATEQGIGLIRIDPDKPL----T---------------------E-QGPFDCIMHKLYGPDW-TQQLQQFSSRNPDV 81 (330)
Q Consensus 29 l~~~~~~~Gi~~~~id~~~~l----~---------------------~-q~~~DvilhK~~~~~~-~~~l~~~~~~~p~v 81 (330)
..++.++.|+++++||++++- . . ...+|+++.=+.+... -..+|.+++.. |+
T Consensus 475 v~~al~~~~~~v~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~lhG~~gedg~iq~~le~~-gi 553 (809)
T PRK14573 475 IAKYLSPEFYDVSYFLINRQGLWETVSSLETAIEEDSGKSVLSSEIAQALAKVDVVLPILHGPFGEDGTMQGFLEII-GK 553 (809)
T ss_pred HHHhhcccCcEEEEEEECCCCeEEecccccccccccccccccchhhhhccccCCEEEEcCCCCCCCChHHHHHHHHc-CC
Confidence 566677889999999887630 0 0 0247888876655321 14677777554 78
Q ss_pred eecC-hHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCch---hh-hhhHHHHHhcCCCcEEEeeCCCCCCCC
Q 047754 82 RIID-PPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETE---LV-TRDMAIEELKLRFPLIAKPLEANGSDK 156 (330)
Q Consensus 82 ~viD-p~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~---~~-~~~~~l~~~~l~fP~VvKp~~a~Gs~~ 156 (330)
+.+- +..+...++||..+-+++++ .|||+|++..+...+ .. ..+... ...++||+|+||..+ ||
T Consensus 554 py~Gs~~~asal~~DK~~~K~~l~~-------~GIpt~~~~~~~~~~~~~~~~~~~~~~-~~~lg~P~iVKP~~~-Gs-- 622 (809)
T PRK14573 554 PYTGPSLAFSAIAMDKVLTKRFASD-------VGVPVVPYQPLTLAGWKREPELCLAHI-VEAFSFPMFVKTAHL-GS-- 622 (809)
T ss_pred CeeCCCHHHHHHHcCHHHHHHHHHH-------CCCCCCCEEEEechhcccChHHHHHHH-HHhcCCCEEEeeCCC-CC--
Confidence 8775 78889999999999999986 799999999886422 11 111111 257999999999996 44
Q ss_pred CcceEEEeChhhhhc-------CCCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccC
Q 047754 157 SHQMYLIFDNEGLEV-------LEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSN 229 (330)
Q Consensus 157 sh~m~iv~~~~~L~~-------l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~ 229 (330)
|.|+.+|.++++|.. .+.++++||||. +|+++.|.|+|+.--... .+ +. .+.....++|+|.+ |+
T Consensus 623 S~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~-~grEi~v~vl~~~~~~~~-~~-~~---~e~~~~~~f~dy~~--Ky 694 (809)
T PRK14573 623 SIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL-GSREIEVSCLGDGSSAYV-IA-GP---HERRGSGGFIDYQE--KY 694 (809)
T ss_pred CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC-CCEEEEEEEEeCCCCceE-ec-cc---eEEccCCCeeCchh--cc
Confidence 589999999998865 357899999985 579999999998531100 01 11 11112235667765 66
Q ss_pred CCCCc-cccccccCCCCc--hHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEeeCCCCCCCCCC---------
Q 047754 230 SVDAD-EEVDLEKTEMPR--EGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDINYLPGYAKLPG--------- 296 (330)
Q Consensus 230 ~~~~~-~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg~~g~~~--------- 296 (330)
...+. ......++.+++ .++++++|.++.++||+.-++ ||++++. +|+ +||+|||..||++...-
T Consensus 695 ~~~g~~~~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~-~g~-~yv~EiNt~PG~t~~s~~p~~~~~~G 772 (809)
T PRK14573 695 GLSGKSSAQIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDFFLDE-EGN-FWLSEMNPIPGMTEASPFLTAFVRKG 772 (809)
T ss_pred cCCCCCceEEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcC-CCC-EEEEEeeCCCCCCcccHHHHHHHHcC
Confidence 32111 000112333333 578999999999999998665 9999985 354 79999999999988633
Q ss_pred -cHHHHHHHHHHHHHhc
Q 047754 297 -YETLLMDFFLNVAKSK 312 (330)
Q Consensus 297 -~~~~l~~~i~~~~~~~ 312 (330)
-+..|++.|++...++
T Consensus 773 ~~~~~li~~ii~~a~~r 789 (809)
T PRK14573 773 WTYEQIVHQLIIDGLHK 789 (809)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 2466777776655443
No 27
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=2.8e-16 Score=150.34 Aligned_cols=247 Identities=17% Similarity=0.184 Sum_probs=177.6
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCC---cC-------CCccEEEEccCChhH-HHHHHHHHHhCCCceecChHHHHHHhcC
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLT---EQ-------GPFDCIMHKLYGPDW-TQQLQQFSSRNPDVRIIDPPESIERLHN 95 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~---~q-------~~~DvilhK~~~~~~-~~~l~~~~~~~p~v~viDp~~ai~~~~d 95 (330)
..++++.+..|.+...+|...... .+ ..+|+++..+++... -..+|.|++..-=-+|.-|..+-..++|
T Consensus 24 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~md 103 (317)
T COG1181 24 KAVLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMD 103 (317)
T ss_pred HHHHHHHhhcCceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhccc
Confidence 456777777999999999997432 12 478999988776421 1356666655433567789999999999
Q ss_pred HHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhc----
Q 047754 96 RDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEV---- 171 (330)
Q Consensus 96 R~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~---- 171 (330)
|..+-.++.. .+++++.++.+...+.......-...+++||++|||... || |-|+..+++.+++..
T Consensus 104 k~~~K~~~~~-------~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~-gS--Svg~~~v~~~~d~~~~~e~ 173 (317)
T COG1181 104 KIVTKRLFKA-------EGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPARE-GS--SVGRSPVNVEGDLQSALEL 173 (317)
T ss_pred HHHHHHHHHH-------CCCCccceeeeecccchhHHHHHhhcccCCCEEEEcCCc-cc--eeeEEEeeeccchHHHHHH
Confidence 9999877775 799999999998643111111223478999999999985 66 789999999888764
Q ss_pred ---CCCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhcc-CcccccCCcccCCC-CCccccccccCCCCc
Q 047754 172 ---LEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSL-KGFLPFSQISSNSV-DADEEVDLEKTEMPR 246 (330)
Q Consensus 172 ---l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~-~g~~~f~~~s~~~~-~~~~~~~~~~~~~~~ 246 (330)
.+..+++|+|++ |+.+.|-++|+.. .... ++ .+++... ..+|+|.+ ++.+ ++.. ...++.+++
T Consensus 174 a~~~d~~vl~e~~~~--~rei~v~vl~~~~-~~~~--l~---~~eI~~~~~~fydye~--Ky~~~gg~~--~~~pa~lt~ 241 (317)
T COG1181 174 AFKYDRDVLREQGIT--GREIEVGVLGNDY-EEQA--LP---LGEIPPKGEEFYDYEA--KYLSTGGAQ--YDIPAGLTD 241 (317)
T ss_pred HHHhCCceeeccCCC--cceEEEEecCCcc-ccee--cC---ceEEecCCCeEEeeec--cccCCCCce--eeCCCCCCH
Confidence 378999999997 9999999999966 1111 11 1123222 46778876 5544 3211 112233333
Q ss_pred --hHHHHHHHHHHHHHhC-CcEEEEEEEEeCCCCCeeEEEEeeCCCCCCCCCC
Q 047754 247 --EGFVVELSRALREALG-LNLFNFDLIRDAGERDGYLVIDINYLPGYAKLPG 296 (330)
Q Consensus 247 --~~~~~~lA~~~~~~LG-l~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~ 296 (330)
.+.++++|.++.++|| ..+.++|++++..+|+ +|++|||..|||..+.-
T Consensus 242 ~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~-~~l~EvNt~PG~t~~sl 293 (317)
T COG1181 242 EIHEEIKELALRAYKALGCLGLARVDFFVDDDEGE-FVLLEVNTNPGMTAMSL 293 (317)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCC-EEEEEEeCCCCCccccc
Confidence 6789999999999999 8899999999974554 79999999999988844
No 28
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.74 E-value=4.7e-16 Score=151.78 Aligned_cols=227 Identities=13% Similarity=0.215 Sum_probs=152.2
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCCc-----------------------CCCccEEEEccCChhHHHHHHHHHHhCCCcee
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLTE-----------------------QGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRI 83 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~~-----------------------q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~v 83 (330)
..++.+|+++|+++..+|.+..-.. +..+|+|+.-..+. ....+..+ .+ .|+++
T Consensus 12 ~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~v-~~~~~~~l-~~-~g~~~ 88 (380)
T TIGR01142 12 KEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPEIEAI-ATDALFEL-EK-EGYFV 88 (380)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEeccCcc-CHHHHHHH-Hh-cCCee
Confidence 4578889999999999999742110 11355555422221 12223333 23 36778
Q ss_pred cChHHHHHHhcCHHHHHHHH-HhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEE
Q 047754 84 IDPPESIERLHNRDSMLEVV-SRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYL 162 (330)
Q Consensus 84 iDp~~ai~~~~dR~~~~~~L-~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i 162 (330)
..++++++.++||..+.+++ .+ .|||+|++..+.+.++... .. ..++||+|+||..+. +|.|+.+
T Consensus 89 ~~~~~~~~~~~dK~~~~~~~~~~-------~gip~p~~~~~~~~~~~~~--~~--~~~g~P~VvKP~~g~---~s~gv~~ 154 (380)
T TIGR01142 89 VPNARATKLTMNREGIRRLAAEE-------LGLPTSRYMFADSLDELRE--AV--EKIGYPCVVKPVMSS---SGKGQSV 154 (380)
T ss_pred CCCHHHHHHhhCHHHHHHHHHHH-------CCCCCCCceEeCCHHHHHH--HH--HHcCCCEEEEECCCc---CCCCeEE
Confidence 88999999999999998875 54 7999999999988665432 22 578999999998753 5689999
Q ss_pred EeChhhhhcC-----------CCCeEEEecccCCCeEEEEEEE---CCeEEEEEeecCCCcchhhhhccCcccccCCccc
Q 047754 163 IFDNEGLEVL-----------EAPILLQEFVNHGGIIFKVYVA---GSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISS 228 (330)
Q Consensus 163 v~~~~~L~~l-----------~~p~vvQefI~h~g~~~Kv~Vi---G~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~ 228 (330)
+.++++|... +.++++||||+ ++.++.+.++ ++++... ....+.. ..+.+.
T Consensus 155 v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~-~~~E~sv~~~~~~~g~~~~~--~~~~~~~------~~~~~~------ 219 (380)
T TIGR01142 155 VRGPEDIEKAWEYAQEGARGGAGRVIVEEFID-FDYEITLLTVRHVDGNTTFC--APIGHRQ------IDGDYH------ 219 (380)
T ss_pred ECCHHHHHHHHHHHHhhccCCCCCEEEEEecC-CCEEEEEEEEEcCCCCEEEe--cCcceEE------eCCeeE------
Confidence 9999988642 35799999996 4678888877 3333221 1111110 001110
Q ss_pred CCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeeEEEEeeCCCCCCCCCC
Q 047754 229 NSVDADEEVDLEKTEMPR--EGFVVELSRALREALGL-NLFNFDLIRDAGERDGYLVIDINYLPGYAKLPG 296 (330)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~ 296 (330)
....+..++. .++++++|.++.++||. .++++|++++++ .+||+|||.-||-.+.+.
T Consensus 220 --------~~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~---~~~viEinpR~~~~~~~~ 279 (380)
T TIGR01142 220 --------ESWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGD---EVIFSEVSPRPHDTGMVT 279 (380)
T ss_pred --------EEECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECC---cEEEEEeecCCCCCceEE
Confidence 0011122222 46688999999999998 477899999742 379999999999776644
No 29
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.74 E-value=1.4e-15 Score=147.39 Aligned_cols=228 Identities=19% Similarity=0.314 Sum_probs=151.5
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCCcCCCcc-EEEEccCCh-----------------hH--HHHHHHHHHhCCCceecCh
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLTEQGPFD-CIMHKLYGP-----------------DW--TQQLQQFSSRNPDVRIIDP 86 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~~q~~~D-vilhK~~~~-----------------~~--~~~l~~~~~~~p~v~viDp 86 (330)
..|..+|+++|++++.+|.+..-....-.| .++....+. .. ...+.. +++. |+++..+
T Consensus 12 ~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e~e~i~~~~l~~-l~~~-g~~~~p~ 89 (352)
T TIGR01161 12 RMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFEFEHVDVEALEK-LEAR-GVKLFPS 89 (352)
T ss_pred HHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeCcCcCCHHHHHH-HHhC-CCeECCC
Confidence 568889999999999999874211100001 111122221 11 122333 3332 5788899
Q ss_pred HHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeCh
Q 047754 87 PESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDN 166 (330)
Q Consensus 87 ~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~ 166 (330)
+++++.++||..+.++|.+ .|||+|++..+.+.++... .. ..++||+|+||..+ |+ +|.|+.++.+.
T Consensus 90 ~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~--~~--~~~g~P~vvKp~~~-g~-~g~Gv~~v~~~ 156 (352)
T TIGR01161 90 PDALAIIQDRLTQKQFLQK-------LGLPVPPFLVIKDEEELDA--AL--QELGFPVVLKARTG-GY-DGRGQYRIRNE 156 (352)
T ss_pred HHHHHHhcCHHHHHHHHHH-------cCCCCCCccEeCCHHHHHH--HH--HHcCCCEEEEeCCC-CC-CCCCEEEECCH
Confidence 9999999999999999986 7999999999988665432 22 56899999999884 33 57899999999
Q ss_pred hhhhcC-----CCCeEEEecccCCCeEEEEEEEC---CeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccc
Q 047754 167 EGLEVL-----EAPILLQEFVNHGGIIFKVYVAG---SSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVD 238 (330)
Q Consensus 167 ~~L~~l-----~~p~vvQefI~h~g~~~Kv~ViG---~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~ 238 (330)
++|... +.++++||||+ +++++.|.++. +++.+. +...+.. ..+....+
T Consensus 157 ~el~~a~~~~~~~~~lvEe~I~-~~~E~sv~~~~~~~G~~~~~--~~~~~~~------~~g~~~~~-------------- 213 (352)
T TIGR01161 157 ADLPQAAKELGDRECIVEEFVP-FERELSVIVARSADGETAFY--PVVENIH------QDGILRYV-------------- 213 (352)
T ss_pred HHHHHHHHhcCCCcEEEEecCC-CCeEEEEEEEEcCCCCEEEE--CCcccEE------eCCEEEEE--------------
Confidence 988653 34899999996 47888887763 333321 1011110 01111110
Q ss_pred cccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 239 LEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 239 ~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
..+..+++ .++++++|.++.++||+. ++++|++++. +|+ +||+|||.=||=.|.
T Consensus 214 ~~p~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~-dg~-~~v~EinpR~~~sg~ 270 (352)
T TIGR01161 214 VAPAAVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLP-DGR-LLINELAPRVHNSGH 270 (352)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC-CCc-EEEEEecCCCCCcCc
Confidence 11222222 467889999999999985 7789999985 453 799999999985553
No 30
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.72 E-value=9.8e-16 Score=149.90 Aligned_cols=226 Identities=20% Similarity=0.254 Sum_probs=154.2
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCCcC---------------------CCccEEEEccCChhHHHHHHHHHHhCCCceecC
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLTEQ---------------------GPFDCIMHKLYGPDWTQQLQQFSSRNPDVRIID 85 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~~q---------------------~~~DvilhK~~~~~~~~~l~~~~~~~p~v~viD 85 (330)
..|..+|+++|+++..+|++..-... ...|+|..-.. .+-....++++++ ..+..
T Consensus 15 ~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e~e--~i~~~~l~~l~~~--~~~~p 90 (372)
T PRK06019 15 RMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYEFE--NVPAEALDALAAR--VPVPP 90 (372)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeCcC--CCCHHHHHHHhcC--CeeCc
Confidence 45788899999999999997422110 02333321111 1112223344454 56789
Q ss_pred hHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeC
Q 047754 86 PPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFD 165 (330)
Q Consensus 86 p~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~ 165 (330)
+++++..+.||..+-+.|++ .|||+|++..+.+.++... .. ..++||+|+||..+ |+ +|+|+.++.+
T Consensus 91 ~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~v~s~~~l~~--~~--~~~g~P~vlKp~~~-g~-~g~Gv~~v~~ 157 (372)
T PRK06019 91 GPDALAIAQDRLTEKQFLDK-------LGIPVAPFAVVDSAEDLEA--AL--ADLGLPAVLKTRRG-GY-DGKGQWVIRS 157 (372)
T ss_pred CHHHHHHhcCHHHHHHHHHH-------CCCCCCCceEeCCHHHHHH--HH--HHcCCcEEEEeCCC-Cc-CCCCeEEECC
Confidence 99999999999999999986 7999999999988765432 22 56899999999874 44 6799999999
Q ss_pred hhhhhcC-----CCCeEEEecccCCCeEEEEEEECC---eEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCcccc
Q 047754 166 NEGLEVL-----EAPILLQEFVNHGGIIFKVYVAGS---SVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEV 237 (330)
Q Consensus 166 ~~~L~~l-----~~p~vvQefI~h~g~~~Kv~ViG~---~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~ 237 (330)
.++|... ..++++||||+ .++++.|.++++ ++.++ +...+... .|.+.++
T Consensus 158 ~~el~~a~~~~~~~~~ivEe~I~-~~~E~sv~~~~~~~G~~~~~--p~~e~~~~------~gi~~~~------------- 215 (372)
T PRK06019 158 AEDLEAAWALLGSVPCILEEFVP-FEREVSVIVARGRDGEVVFY--PLVENVHR------NGILRTS------------- 215 (372)
T ss_pred HHHHHHHHHhcCCCCEEEEecCC-CCeEEEEEEEECCCCCEEEe--CCcccEEe------CCEEEEE-------------
Confidence 9998753 45899999996 478898887754 33221 11111111 1222111
Q ss_pred ccccCCCC--chHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 238 DLEKTEMP--REGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 238 ~~~~~~~~--~~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
..+..++ ..++++++|.++.++||+. ++++|++++. +| .+||+|||.=|+-.|.
T Consensus 216 -~~pa~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~-dg-~~~v~EinpR~~~sg~ 272 (372)
T PRK06019 216 -IAPARISAELQAQAEEIASRIAEELDYVGVLAVEFFVTG-DG-ELLVNEIAPRPHNSGH 272 (372)
T ss_pred -ECCCCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcC-CC-eEEEEEecCCccCccc
Confidence 0112222 2567899999999999986 7789999974 45 3799999999986655
No 31
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.70 E-value=6.9e-16 Score=134.42 Aligned_cols=164 Identities=25% Similarity=0.386 Sum_probs=103.9
Q ss_pred HhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhc
Q 047754 92 RLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEV 171 (330)
Q Consensus 92 ~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~ 171 (330)
+|.||..|.+++.+ .+|++|++..+.+.++... .. ..++||+|+||..+. +|.++.++.++++|.+
T Consensus 1 ~~~dK~~~~~~~~~-------~gv~~P~~~~~~~~~~~~~--~~--~~~~~p~vvKp~~g~---gs~gv~~~~~~~~l~~ 66 (184)
T PF13535_consen 1 RCNDKYRMRELLKK-------AGVPVPKTRIVDSEEELRA--FA--EDLGFPFVVKPVDGS---GSRGVFIVHSPEELEA 66 (184)
T ss_dssp -TCCHHHHHHHHHH-------HTS----EEEECSHHHHHH--HH--HHSSSSEEEEESS-S---TTTT-EEESSHHHHHH
T ss_pred CCCCHHHHHHHHHH-------cCcCCCCEEEECCHHHHHH--HH--HHcCCCEEEEcCccc---cCCCEEEeCCHHHHHH
Confidence 57899999999986 6999999999998776543 22 557799999999964 4589999999999976
Q ss_pred C-----------CCCeEEEecccCCCeEE--EEEEECCeEEEEE-eecCCCcchhhhhccCcccccCCcccCCCCCcccc
Q 047754 172 L-----------EAPILLQEFVNHGGIIF--KVYVAGSSVKCVK-RKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEV 237 (330)
Q Consensus 172 l-----------~~p~vvQefI~h~g~~~--Kv~ViG~~v~~~~-R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~ 237 (330)
. ..++++||||+ |.++ .+++.++++++.. ....... . ..+.. .... +
T Consensus 67 ~~~~~~~~~~~~~~~~ivqe~i~--g~e~~~~~~~~~G~~~~~~~~~~~~~~-~---------~~~~~--~~~~-----~ 127 (184)
T PF13535_consen 67 ALAEIREDSPLGNGPVIVQEYIP--GDEYSVDGVVDDGEVVFAGISRYVRQS-P---------GHFSG--GVPT-----G 127 (184)
T ss_dssp HHHHHHHHHS-HSSSEEEEE-----SEEEEEEEEEETTEEEEEEEEEEEEEE-T---------CCCSS--SEEE-----E
T ss_pred HHHHHHHhcccCCccEEEEEeee--eeeEEEEEEEEcceEEEEEEEEEeccc-c---------ccccc--ceee-----e
Confidence 4 24799999997 5555 6677788875422 2111100 0 00000 0000 1
Q ss_pred ccccCCCCchHHHHHHHHHHHHHhCC--cEEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 238 DLEKTEMPREGFVVELSRALREALGL--NLFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 238 ~~~~~~~~~~~~~~~lA~~~~~~LGl--~l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
...+...+..+.+++++.++.+++|+ ..+++|++.+.. | .+++||||.=||
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~-g-~~~~iEiN~R~~ 180 (184)
T PF13535_consen 128 YSVPSEPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPD-G-ELYFIEINPRFG 180 (184)
T ss_dssp EEES--CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETC-C-EEEEEEEESS--
T ss_pred eecccccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCC-C-CEEEEEECccCC
Confidence 11111112247889999999999998 688899999974 6 489999998665
No 32
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.69 E-value=7.7e-15 Score=150.98 Aligned_cols=243 Identities=15% Similarity=0.190 Sum_probs=162.4
Q ss_pred CCCceEEEEEeccCCcccCcchHHHHHHHHCCCeEEEeCCCCCCCc-C-------C-------------CccEEEEccCC
Q 047754 6 GQPYCKIGYVFAPNKEQTVIQPSLITKATEQGIGLIRIDPDKPLTE-Q-------G-------------PFDCIMHKLYG 64 (330)
Q Consensus 6 ~~~~~~vg~~~~~~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~-q-------~-------------~~DvilhK~~~ 64 (330)
+....+||....- .....+..+|+++|++++.+|.+.+-.. + + ..|++..-...
T Consensus 19 ~~~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~ 93 (577)
T PLN02948 19 GVSETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEH 93 (577)
T ss_pred CCCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCC
Confidence 3566678877766 2235578899999999999999743110 0 0 12332211110
Q ss_pred hhHHHHHHHHHHhCCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcE
Q 047754 65 PDWTQQLQQFSSRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPL 144 (330)
Q Consensus 65 ~~~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~ 144 (330)
.. ...+ +.++++ |+++..+++++..++||+.+-+.|.+ .+||+|++..+.+.++... .. ..++||+
T Consensus 94 v~-~~~l-~~le~~-gi~v~ps~~al~i~~DK~~~K~~l~~-------~GIptp~~~~v~~~~el~~--~~--~~ig~P~ 159 (577)
T PLN02948 94 VD-VDTL-EALEKQ-GVDVQPKSSTIRIIQDKYAQKVHFSK-------HGIPLPEFMEIDDLESAEK--AG--DLFGYPL 159 (577)
T ss_pred CC-HHHH-HHHHhc-CCccCCCHHHHHHhcCHHHHHHHHHH-------CCcCCCCeEEeCCHHHHHH--HH--HhcCCcE
Confidence 01 1223 333333 67778999999999999999999986 7999999999987655432 22 5789999
Q ss_pred EEeeCCCCCCCCCcceEEEeChhhhhcC-------CCCeEEEecccCCCeEEEEEEECC---eEEEEEeecCCCcchhhh
Q 047754 145 IAKPLEANGSDKSHQMYLIFDNEGLEVL-------EAPILLQEFVNHGGIIFKVYVAGS---SVKCVKRKSLPDISEEKM 214 (330)
Q Consensus 145 VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~vvQefI~h~g~~~Kv~ViG~---~v~~~~R~S~~~~~~~~~ 214 (330)
|+||..+ |+ +|.|+.++.++++|... +.++++|+||+ +.+.+-|.|+++ ++.+. |.. +.
T Consensus 160 VvKP~~g-gs-~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~-~~~EisV~v~r~~~G~i~~~-----p~~---E~ 228 (577)
T PLN02948 160 MLKSRRL-AY-DGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAP-FVKELAVMVARSRDGSTRCY-----PVV---ET 228 (577)
T ss_pred EEEeCCC-CC-CCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCC-CCeEEEEEEEECCCCCEEEe-----cCc---cc
Confidence 9999884 33 57899999999888642 46899999995 358999988853 33321 211 00
Q ss_pred hccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCC
Q 047754 215 KSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGY 291 (330)
Q Consensus 215 ~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~ 291 (330)
....+.+.+. ..++.+++ .++++++|.++.++||.. ++.+|++++. +|. +||+|||.-||.
T Consensus 229 ~~~~~~~~~~--------------~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~-dG~-v~v~EInpRpg~ 292 (577)
T PLN02948 229 IHKDNICHVV--------------EAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLK-DGQ-ILLNEVAPRPHN 292 (577)
T ss_pred EEECCeeEEE--------------EECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcC-CCc-EEEEEEeCCCCC
Confidence 0000111110 01222222 568899999999999976 5679999985 453 799999999997
Q ss_pred CCC
Q 047754 292 AKL 294 (330)
Q Consensus 292 ~g~ 294 (330)
.|.
T Consensus 293 sGh 295 (577)
T PLN02948 293 SGH 295 (577)
T ss_pred CCc
Confidence 664
No 33
>PRK06849 hypothetical protein; Provisional
Probab=99.68 E-value=8.9e-15 Score=143.68 Aligned_cols=220 Identities=18% Similarity=0.211 Sum_probs=143.4
Q ss_pred HHHHHHHHCCCeEEEeCCCCC-CC------------------------------cCCCccEEEEccCChhHHHHHHHHHH
Q 047754 28 SLITKATEQGIGLIRIDPDKP-LT------------------------------EQGPFDCIMHKLYGPDWTQQLQQFSS 76 (330)
Q Consensus 28 ~l~~~~~~~Gi~~~~id~~~~-l~------------------------------~q~~~DvilhK~~~~~~~~~l~~~~~ 76 (330)
.+.+.+.+.|++++.+|.... +. .+..+|++|.=..+....+...+.++
T Consensus 19 ~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vIP~~e~~~~~a~~~~~l~ 98 (389)
T PRK06849 19 ELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLIPTCEEVFYLSHAKEELS 98 (389)
T ss_pred HHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEEECChHHHhHHhhhhhhc
Confidence 466777888999988888731 10 01234555543322211222222232
Q ss_pred hCCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCC
Q 047754 77 RNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDK 156 (330)
Q Consensus 77 ~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~ 156 (330)
.+ ..+...++++++.++||..+++.+.+ .||++|+|..+.+.++... +.....+||+|+||..++|
T Consensus 99 ~~-~~v~~~~~~~~~~~~DK~~~~~~~~~-------~GipvP~t~~v~~~~~l~~---~~~~~~~~P~vlKP~~~~~--- 164 (389)
T PRK06849 99 AY-CEVLHFDFELLLLLHNKWEFAEQARS-------LGLSVPKTYLITDPEAIRN---FMFKTPHTPYVLKPIYSRF--- 164 (389)
T ss_pred CC-cEEEcCCHHHHHHhhCHHHHHHHHHH-------cCCCCCCEEEeCCHHHHHH---HhhcCCCCcEEEEeCcccC---
Confidence 22 23456889999999999999999986 7999999999988776542 2222248999999998654
Q ss_pred CcceEEEeChhhhhcC----CCCeEEEecccCCCeEE--EEEEECCeEEEEE-eecCCCcchhhhhccCcccccCCcccC
Q 047754 157 SHQMYLIFDNEGLEVL----EAPILLQEFVNHGGIIF--KVYVAGSSVKCVK-RKSLPDISEEKMKSLKGFLPFSQISSN 229 (330)
Q Consensus 157 sh~m~iv~~~~~L~~l----~~p~vvQefI~h~g~~~--Kv~ViG~~v~~~~-R~S~~~~~~~~~~~~~g~~~f~~~s~~ 229 (330)
++++.++.+.+.+..+ ..|+++||||+ |..+ -.++.++++.+.. ++ +....+
T Consensus 165 ~~~v~~~~~~~~l~~~~~~~~~~~ivQe~I~--G~e~~~~~~~~~G~v~~~~~~~--~~~~~~----------------- 223 (389)
T PRK06849 165 VRRVDLLPKEAALKELPISKDNPWVMQEFIQ--GKEYCSYSIVRSGELRAHSCYK--PEYCAG----------------- 223 (389)
T ss_pred CCeEEEecCHHHhcccccCCCCCeEEEEEec--CCeEEEEEEEECCEEEEEEEee--ccccCC-----------------
Confidence 5788888898877765 34899999996 5554 5566777765432 11 110000
Q ss_pred CCCCccccccccCCCCchHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 230 SVDADEEVDLEKTEMPREGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
.+.. ...... ..+.+++++.++.++||++ .++||++.+. +|+ +|+||||.=++
T Consensus 224 -~~~~--~~~~~~---~~~~l~~~~~~~~~~l~~~G~~~~df~~~~-~g~-~~~iEiNpR~~ 277 (389)
T PRK06849 224 -SGAQ--IAFQPI---NHPRIEEFVTHFVKELNYTGQISFDFIETE-NGD-AYPIECNPRTT 277 (389)
T ss_pred -CCce--eEeEEC---CcHHHHHHHHHHHHhcCceeEEEEEEEECC-CCC-EEEEEecCCCC
Confidence 0000 000111 2467889999999999998 7789999873 564 89999996554
No 34
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.67 E-value=7.1e-15 Score=140.43 Aligned_cols=167 Identities=25% Similarity=0.334 Sum_probs=119.6
Q ss_pred Cc-eecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCc
Q 047754 80 DV-RIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSH 158 (330)
Q Consensus 80 ~v-~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 158 (330)
|+ ++.++++++..+.||..+.+.|.+ .|+++|++..+++.++... .+....++||+|+||..+. +|.
T Consensus 95 g~~~~~~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~~~~~~--~~~~~~~~~P~viKP~~g~---~s~ 162 (326)
T PRK12767 95 GVKVLVSSKEVIEICNDKWLTYEFLKE-------NGIPTPKSYLPESLEDFKA--ALAKGELQFPLFVKPRDGS---ASI 162 (326)
T ss_pred CcEEEeCCHHHHHHHhcHHHHHHHHHH-------cCCCCCCEEcccCHHHHHh--hhhcccCCCCEEEEeCCCC---Ccc
Confidence 44 567999999999999999999986 7999999998887655432 1123578999999997754 468
Q ss_pred ceEEEeChhhhhcC---CCCeEEEecccCCCeEEEEEEE---CCeEEE-EEeecCCCcchhhhhccCcccccCCcccCCC
Q 047754 159 QMYLIFDNEGLEVL---EAPILLQEFVNHGGIIFKVYVA---GSSVKC-VKRKSLPDISEEKMKSLKGFLPFSQISSNSV 231 (330)
Q Consensus 159 ~m~iv~~~~~L~~l---~~p~vvQefI~h~g~~~Kv~Vi---G~~v~~-~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~ 231 (330)
++.++.+.+++... ..++++|||| .|..+.+-++ ++++++ ..+..+.. .. | .
T Consensus 163 gv~~v~~~~el~~~~~~~~~~lvqeyi--~G~e~~v~~~~~~~G~~~~~~~~~~~~~-~~-------g--------~--- 221 (326)
T PRK12767 163 GVFKVNDKEELEFLLEYVPNLIIQEFI--EGQEYTVDVLCDLNGEVISIVPRKRIEV-RA-------G--------E--- 221 (326)
T ss_pred CeEEeCCHHHHHHHHHhCCCeEEEecc--CCceEEEEEEEcCCCCEEEEEEeeeeee-cC-------C--------c---
Confidence 99999999998753 3599999999 5777765444 455543 22322110 00 0 0
Q ss_pred CCccccccccCCCCchHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCC
Q 047754 232 DADEEVDLEKTEMPREGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLP 289 (330)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fP 289 (330)
.......+.+++.+++.++.++||++ +++||+++++ | .+++||||.-+
T Consensus 222 -------~~~~~~~~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~--g-~~~viEiNpR~ 270 (326)
T PRK12767 222 -------TSKGVTVKDPELFKLAERLAEALGARGPLNIQCFVTD--G-EPYLFEINPRF 270 (326)
T ss_pred -------eeEEEEcCCHHHHHHHHHHHHhcCCeeeEEEEEEEEC--C-eEEEEEEeCCC
Confidence 00000012467889999999999995 7889999985 3 48999999744
No 35
>PRK07206 hypothetical protein; Provisional
Probab=99.67 E-value=1.3e-14 Score=143.32 Aligned_cols=230 Identities=15% Similarity=0.175 Sum_probs=151.1
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCC----------c------------------CCCccEEEEccCChhHHHHHHHHHHhC
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLT----------E------------------QGPFDCIMHKLYGPDWTQQLQQFSSRN 78 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~----------~------------------q~~~DvilhK~~~~~~~~~l~~~~~~~ 78 (330)
..+.++++++|++++.++.+.... . .-.+|+++. . .+... .+.+.++++
T Consensus 15 ~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~d~vi~-~-~e~~~-~~~a~l~~~ 91 (416)
T PRK07206 15 KFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVIINGDIDDLVEFLRKLGPEAIIA-G-AESGV-ELADRLAEI 91 (416)
T ss_pred HHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhcCCCHHHHHHHHHHcCCCEEEE-C-CCccH-HHHHHHHHh
Confidence 457888999999999988553110 0 123455554 1 22222 223334455
Q ss_pred CCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCC---cEEEeeCCCCCCC
Q 047754 79 PDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRF---PLIAKPLEANGSD 155 (330)
Q Consensus 79 p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~f---P~VvKp~~a~Gs~ 155 (330)
-+.+.-++++++..++||+.|.+.|.+ .||++|++..+.+.++... .+ ..++| |+|+||..+.
T Consensus 92 l~l~~~~~~~~~~~~~dK~~~r~~l~~-------~gi~~p~~~~~~~~~e~~~--~~--~~~g~~~~P~VvKP~~g~--- 157 (416)
T PRK07206 92 LTPQYSNDPALSSARRNKAEMINALAE-------AGLPAARQINTADWEEAEA--WL--RENGLIDRPVVIKPLESA--- 157 (416)
T ss_pred cCCCcCCChhhHHHhhCHHHHHHHHHH-------cCCCcccEEecCCHHHHHH--HH--HhcCCCCCCEEEeCCCCC---
Confidence 577778999999999999999999986 7999999999887665542 23 45666 9999998864
Q ss_pred CCcceEEEeChhhhhcC--------------CCCeEEEecccCCCeEEEE--EEECCeEEE--EEeecCCCcchhhhhcc
Q 047754 156 KSHQMYLIFDNEGLEVL--------------EAPILLQEFVNHGGIIFKV--YVAGSSVKC--VKRKSLPDISEEKMKSL 217 (330)
Q Consensus 156 ~sh~m~iv~~~~~L~~l--------------~~p~vvQefI~h~g~~~Kv--~ViG~~v~~--~~R~S~~~~~~~~~~~~ 217 (330)
+|.++.++.+.++|.+. +.++++||||. |..|-| ++.++++.+ ..+..-....
T Consensus 158 gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~E~sv~~~~~~G~~~~~~~~~~~~~~~~------- 228 (416)
T PRK07206 158 GSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI--GTEYVVNFVSLDGNHLVTEIVRYHKTSLN------- 228 (416)
T ss_pred CCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc--cEEEEEEEEEECCEEEEEEeEEeeecccC-------
Confidence 45899999999888642 24799999995 777765 444666543 2222111100
Q ss_pred CcccccCCcccCCCCCccccccccCCCCchHHHHHHHHHHHHHhCC--cEEEEEEEEeCCCCCeeEEEEeeCCCCCCCCC
Q 047754 218 KGFLPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRALREALGL--NLFNFDLIRDAGERDGYLVIDINYLPGYAKLP 295 (330)
Q Consensus 218 ~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LGl--~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~ 295 (330)
.+.+.++. ....+...+..+++.+++.++.++||+ ..+.+|++++. +| +++||||.=||=...+
T Consensus 229 ~~~~~~~~-----------~~~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~-~g--~~liEin~R~~G~~~~ 294 (416)
T PRK07206 229 SGSTVYDY-----------DEFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTA-DG--PRLIEIGARLDGGLHP 294 (416)
T ss_pred CCCceecc-----------cccCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcC-CC--CEEEEECCccCCCCcc
Confidence 01111110 000011111256788999999999999 47789999875 33 5799999998855555
Q ss_pred C
Q 047754 296 G 296 (330)
Q Consensus 296 ~ 296 (330)
.
T Consensus 295 ~ 295 (416)
T PRK07206 295 D 295 (416)
T ss_pred c
Confidence 4
No 36
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.66 E-value=2e-14 Score=141.07 Aligned_cols=229 Identities=14% Similarity=0.213 Sum_probs=152.0
Q ss_pred chHHHHHHHHCCCeEEEeCCCCCCC--------------c---------CCCccEEEEccCChhHHHHHHHHHHhCCCce
Q 047754 26 QPSLITKATEQGIGLIRIDPDKPLT--------------E---------QGPFDCIMHKLYGPDWTQQLQQFSSRNPDVR 82 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~l~--------------~---------q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~ 82 (330)
...++.+++++|+++..+|.+.... + ...+|+|+.-..+.. ...+.++ .+. |++
T Consensus 24 ~~~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~~-~~~~~~l-~~~-g~~ 100 (395)
T PRK09288 24 GKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIVPEIEAIA-TDALVEL-EKE-GFN 100 (395)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEEEeeCcCC-HHHHHHH-Hhc-CCe
Confidence 3557788999999999999873210 0 114566665332211 2223333 333 787
Q ss_pred ecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEE
Q 047754 83 IIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYL 162 (330)
Q Consensus 83 viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i 162 (330)
+..++++++.++||..+.+++.+ ..+||+|++..+++.++... .. ..++||+|+||..+ + +|.|+.+
T Consensus 101 ~~~~~~a~~~~~dK~~~k~~l~~------~~gip~p~~~~~~s~~~l~~--~~--~~~g~P~VvKP~~g--~-~s~Gv~~ 167 (395)
T PRK09288 101 VVPTARATRLTMNREGIRRLAAE------ELGLPTSPYRFADSLEELRA--AV--EEIGYPCVVKPVMS--S-SGKGQSV 167 (395)
T ss_pred eCCCHHHHHHHhCHHHHHHHHHH------hCCCCCCCceEECCHHHHHH--HH--HhcCCCEEEEeCCC--c-CCCCeEE
Confidence 78889999999999999998842 26999999999998766532 22 56899999999864 3 5689999
Q ss_pred EeChhhhhcC-----------CCCeEEEecccCCCeEEEEEEECCe---EEEEEeecCCCcchhhhhccCcccccCCccc
Q 047754 163 IFDNEGLEVL-----------EAPILLQEFVNHGGIIFKVYVAGSS---VKCVKRKSLPDISEEKMKSLKGFLPFSQISS 228 (330)
Q Consensus 163 v~~~~~L~~l-----------~~p~vvQefI~h~g~~~Kv~ViG~~---v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~ 228 (330)
+.++++|.+. +.++++||||+ .+..+.+.++.+. .... ....++. ..+.+.. .
T Consensus 168 v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~-~~~E~sv~~~~~~~~~~~~~--~~~~~~~------~~~~~~~----~ 234 (395)
T PRK09288 168 VRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID-FDYEITLLTVRAVDGGTHFC--APIGHRQ------EDGDYRE----S 234 (395)
T ss_pred ECCHHHHHHHHHHHHhhccccCCCEEEEEecC-CCEEEEEEEEEcCCCCEEEe--cCcccEE------ECCEEEE----E
Confidence 9999888642 25899999996 4778888877432 2221 1111110 0011100 0
Q ss_pred CCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCCCC
Q 047754 229 NSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKLPG 296 (330)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~ 296 (330)
..+..+++ .++++++|.++.++||.. .+.+|++++++ .+||||+|.=||-.+...
T Consensus 235 ----------~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~---~~~viEinpR~~~~~~~~ 292 (395)
T PRK09288 235 ----------WQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGD---EVYFSEVSPRPHDTGMVT 292 (395)
T ss_pred ----------ECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---eEEEEEecCCCCCCccee
Confidence 01112211 456789999999999964 56799999753 379999999998766544
No 37
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.64 E-value=2.6e-14 Score=156.57 Aligned_cols=227 Identities=15% Similarity=0.237 Sum_probs=150.5
Q ss_pred cchHHHHHHHHCCCeEEEeCCCCCC-C------c-----------------CCCccEEEEccCChhHHHHHHHHHHhCCC
Q 047754 25 IQPSLITKATEQGIGLIRIDPDKPL-T------E-----------------QGPFDCIMHKLYGPDWTQQLQQFSSRNPD 80 (330)
Q Consensus 25 ~~~~l~~~~~~~Gi~~~~id~~~~l-~------~-----------------q~~~DvilhK~~~~~~~~~l~~~~~~~p~ 80 (330)
....++++++++|++++.+|.+-.. . + ....|.++.-..++... .+...+.+ -|
T Consensus 576 ~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~~i~~~e~~dgVi~~~g~~~~~-~la~~le~-~G 653 (1066)
T PRK05294 576 CCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKGVIVQFGGQTPL-KLAKALEA-AG 653 (1066)
T ss_pred hHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeecCCCHHHHHHHHHHcCCCEEEEEeCchhHH-HHHHHHHH-CC
Confidence 3455789999999999999977321 1 0 12356666655554432 33344444 37
Q ss_pred ceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcc
Q 047754 81 VRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQ 159 (330)
Q Consensus 81 v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 159 (330)
++++ .++++++.+.||..+.++|.+ .|||+|++..+.+.++... .. ..++||+|+||..+. +|.+
T Consensus 654 i~ilg~s~~ai~~~~DK~~~~~~L~~-------~GIp~P~~~~~~s~ee~~~--~~--~~igyPvvVKP~~~~---Gg~G 719 (1066)
T PRK05294 654 VPILGTSPDAIDLAEDRERFSKLLEK-------LGIPQPPNGTATSVEEALE--VA--EEIGYPVLVRPSYVL---GGRA 719 (1066)
T ss_pred CceeCCCHHHHHHhCCHHHHHHHHHH-------cCcCCCCeEEECCHHHHHH--HH--HhcCCCeEEEeCCCC---CCCc
Confidence 8766 689999999999999999986 7999999999988765532 22 578999999998753 5689
Q ss_pred eEEEeChhhhhcC---------CCCeEEEecccCC-CeEEEEEEECCeEEE--EEeecCCCcchhhhhccCcccccCCcc
Q 047754 160 MYLIFDNEGLEVL---------EAPILLQEFVNHG-GIIFKVYVAGSSVKC--VKRKSLPDISEEKMKSLKGFLPFSQIS 227 (330)
Q Consensus 160 m~iv~~~~~L~~l---------~~p~vvQefI~h~-g~~~Kv~ViG~~v~~--~~R~S~~~~~~~~~~~~~g~~~f~~~s 227 (330)
|.++.|+++|..+ +.|+++||||... ...+-+++-|+.+.+ .++.--+.
T Consensus 720 v~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg~~v~i~~i~e~i~~~------------------- 780 (1066)
T PRK05294 720 MEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGEDVLIGGIMEHIEEA------------------- 780 (1066)
T ss_pred EEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecCCeEEEeeeEEeeeec-------------------
Confidence 9999999998752 4689999999633 223344443443432 11110000
Q ss_pred cCCCCCccccccccCCCC--chHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 228 SNSVDADEEVDLEKTEMP--REGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~--~~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
..++|..... ..+..++ ..+.++++|.++.++||+. ++++|+++++ + .+||||||.-|+
T Consensus 781 gv~~Gds~~~-~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~--~-~~yViEiNpR~s 842 (1066)
T PRK05294 781 GVHSGDSACS-LPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKD--D-EVYVIEVNPRAS 842 (1066)
T ss_pred cccCCCCcEE-ecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEEC--C-eEEEEEEecCCC
Confidence 0111100000 0011222 1457889999999999995 6679999974 3 479999998876
No 38
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.63 E-value=6.6e-14 Score=153.08 Aligned_cols=224 Identities=15% Similarity=0.245 Sum_probs=151.7
Q ss_pred chHHHHHHHHCCCeEEEeCCCCCCC-------c-----------------CCCccEEEEccCChhHHHHHHHHHHhCCCc
Q 047754 26 QPSLITKATEQGIGLIRIDPDKPLT-------E-----------------QGPFDCIMHKLYGPDWTQQLQQFSSRNPDV 81 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~l~-------~-----------------q~~~DvilhK~~~~~~~~~l~~~~~~~p~v 81 (330)
.-.++++++++|++++.+|.+-... + ...+|.|+.-..++.. ..+.+.+.+ .|+
T Consensus 577 ~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e~idgVI~~~gg~~~-~~la~~le~-~Gi 654 (1050)
T TIGR01369 577 CVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEGVIVQFGGQTP-LNLAKALEE-AGV 654 (1050)
T ss_pred HHHHHHHHHhCCCEEEEEecCCccccccccccceEEEecCCHHHHHHHHhhcCCCEEEEccCcHhH-HHHHHHHHH-CCC
Confidence 3456899999999999998863210 0 1134555544444331 233344444 377
Q ss_pred eec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcce
Q 047754 82 RII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQM 160 (330)
Q Consensus 82 ~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m 160 (330)
+++ .+++++..+.||..+.++|.+ .||++|++..+.+.++... .. ..++||+|+||..+. +|.+|
T Consensus 655 ~i~G~s~~~i~~~~DK~~f~~lL~~-------~GIp~P~~~~v~s~ee~~~--~~--~~igyPvIVKP~~~~---Gg~gv 720 (1050)
T TIGR01369 655 PILGTSPESIDRAEDREKFSELLDE-------LGIPQPKWKTATSVEEAVE--FA--SEIGYPVLVRPSYVL---GGRAM 720 (1050)
T ss_pred cEECCCHHHHHHHCCHHHHHHHHHH-------CCcCCCCeEEECCHHHHHH--HH--HhcCCCEEEEECCCC---CCCCe
Confidence 765 789999999999999999986 7999999999998766543 22 578999999998854 45899
Q ss_pred EEEeChhhhhcC---------CCCeEEEecccCCCeEE--EEEEECCeEEEE--EeecCCCcchhhhhccCcccccCCcc
Q 047754 161 YLIFDNEGLEVL---------EAPILLQEFVNHGGIIF--KVYVAGSSVKCV--KRKSLPDISEEKMKSLKGFLPFSQIS 227 (330)
Q Consensus 161 ~iv~~~~~L~~l---------~~p~vvQefI~h~g~~~--Kv~ViG~~v~~~--~R~S~~~~~~~~~~~~~g~~~f~~~s 227 (330)
.++.|+++|..+ +.|+++||||+. |..+ -+++-|+++++. +..-...
T Consensus 721 ~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~-G~E~~Vd~l~d~g~v~i~~i~e~~~~~------------------- 780 (1050)
T TIGR01369 721 EIVYNEEELRRYLEEAVEVSPEHPVLIDKYLED-AVEVDVDAVSDGEEVLIPGIMEHIEEA------------------- 780 (1050)
T ss_pred EEECCHHHHHHHHHHHHHhCCCCCEEEeecCCC-CeEEEEEEEEeCCEEEEEEEEEeeccc-------------------
Confidence 999999998752 468999999963 6555 456666666542 1110000
Q ss_pred cCCCCCccccccccC-CCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 228 SNSVDADEEVDLEKT-EMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 228 ~~~~~~~~~~~~~~~-~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
..+++.. ....+. .+++ .+.++++|.++.++||+. ++++|+++++ + .+||||||.-++
T Consensus 781 gv~sGds--~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~--~-~~yvIEvNpR~s 842 (1050)
T TIGR01369 781 GVHSGDS--TCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKD--G-EVYVIEVNPRAS 842 (1050)
T ss_pred CCcCCCc--eEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEEC--C-eEEEEEEeCCCC
Confidence 0111100 000111 1221 357889999999999986 5569999974 3 489999999886
No 39
>PRK08462 biotin carboxylase; Validated
Probab=99.63 E-value=5.2e-14 Score=140.62 Aligned_cols=226 Identities=17% Similarity=0.192 Sum_probs=144.7
Q ss_pred chHHHHHHHHCCCeEEEeCCCCCC--C--c----------------------------CCCccEEEEccCChhHHHHHHH
Q 047754 26 QPSLITKATEQGIGLIRIDPDKPL--T--E----------------------------QGPFDCIMHKLYGPDWTQQLQQ 73 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~l--~--~----------------------------q~~~DvilhK~~~~~~~~~l~~ 73 (330)
.-+++++|+++|++.+.++-..+- . . ...+|+|+.=.....-...+.+
T Consensus 16 ~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~lse~~~~a~ 95 (445)
T PRK08462 16 ALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPGYGFLSENQNFVE 95 (445)
T ss_pred HHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEECCCccccCHHHHH
Confidence 456899999999999998433211 0 0 1134555543321000122333
Q ss_pred HHHhCCCcee-cChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE--EecCchhhhhhHHHHHhcCCCcEEEeeCC
Q 047754 74 FSSRNPDVRI-IDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQA--VVSETELVTRDMAIEELKLRFPLIAKPLE 150 (330)
Q Consensus 74 ~~~~~p~v~v-iDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~l~~~~l~fP~VvKp~~ 150 (330)
..++ -|+++ -.+++++..++||..+.+.|.+ .|||+|++. .+.+.++... .. ..++||+|+||..
T Consensus 96 ~~e~-~Gi~~~g~~~~~~~~~~dK~~~r~~l~~-------~gIp~pp~~~~~~~~~~~~~~--~~--~~~g~PvvvKP~~ 163 (445)
T PRK08462 96 ICSH-HNIKFIGPSVEVMALMSDKSKAKEVMKR-------AGVPVIPGSDGALKSYEEAKK--IA--KEIGYPVILKAAA 163 (445)
T ss_pred HHHH-CCCeEECcCHHHHHHhCCHHHHHHHHHH-------CCCCCCCCcccccCCHHHHHH--HH--HHcCCCEEEEeCC
Confidence 3434 37764 5888999999999999999986 799998864 4555444332 22 5689999999988
Q ss_pred CCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCe---EEEE-Eee-cCCCcchh
Q 047754 151 ANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSS---VKCV-KRK-SLPDISEE 212 (330)
Q Consensus 151 a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~---v~~~-~R~-S~~~~~~~ 212 (330)
++ +|+||.++.++++|... +.++++||||+ +++.+.+.++|+. ++.. .|. +...
T Consensus 164 g~---gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~~~~g~~~~~g~~~~~~~~---- 235 (445)
T PRK08462 164 GG---GGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFIN-NPRHIEVQILGDKHGNVIHVGERDCSLQR---- 235 (445)
T ss_pred CC---CCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCC-CCeEEEEEEEECCCCCEEEEEecccccee----
Confidence 64 46899999999988642 24699999996 3677888888652 2221 111 1100
Q ss_pred hhhccCcccccCCcccCCCCCccccccccCCCC--chHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEeeCCC
Q 047754 213 KMKSLKGFLPFSQISSNSVDADEEVDLEKTEMP--REGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDINYLP 289 (330)
Q Consensus 213 ~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEVN~fP 289 (330)
..+ +.-. ..|.. .++ ..+.+.++|.++.++||+.-++ ||++++.+ | .+||+|||.=+
T Consensus 236 -----------~~~-~~~~-----~~p~~-~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~-g-~~~viEiNpR~ 295 (445)
T PRK08462 236 -----------RHQ-KLIE-----ESPAV-VLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSN-L-DFYFMEMNTRL 295 (445)
T ss_pred -----------ccc-ceEE-----EcCCC-CCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCC-C-CEEEEEEECCc
Confidence 000 0000 00110 111 1467889999999999998555 99999853 3 37999999988
Q ss_pred CC
Q 047754 290 GY 291 (330)
Q Consensus 290 g~ 291 (330)
|-
T Consensus 296 ~~ 297 (445)
T PRK08462 296 QV 297 (445)
T ss_pred Cc
Confidence 64
No 40
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.62 E-value=9.3e-14 Score=139.88 Aligned_cols=174 Identities=13% Similarity=0.197 Sum_probs=121.8
Q ss_pred Cce-ecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE--EecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCC
Q 047754 80 DVR-IIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQA--VVSETELVTRDMAIEELKLRFPLIAKPLEANGSDK 156 (330)
Q Consensus 80 ~v~-viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~ 156 (330)
|++ +-.++++++.+.||..+.+++.+ .|||+|++. .+.+.++... .. ..++||+|+||..++ +
T Consensus 102 gi~~igps~~ai~~~~DK~~~r~~l~~-------~GIp~~p~~~~~v~~~~e~~~--~~--~~igyPvvvKp~~gg---g 167 (467)
T PRK12833 102 GLIFVGPDAQTIRTMGDKARARRTARR-------AGVPTVPGSDGVVASLDAALE--VA--ARIGYPLMIKAAAGG---G 167 (467)
T ss_pred CCCccCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCCcCcCcCCHHHHHH--HH--HHhCCCEEEEECCCC---C
Confidence 665 45578999999999999999986 799998875 5666554432 22 568999999998854 4
Q ss_pred CcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCe--EE-EEEee-cCCCcchhhhhccCc
Q 047754 157 SHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSS--VK-CVKRK-SLPDISEEKMKSLKG 219 (330)
Q Consensus 157 sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~--v~-~~~R~-S~~~~~~~~~~~~~g 219 (330)
|.||.++.++++|... +..+++|+||+. |+.+-|-|+||. ++ ...|. +... .
T Consensus 168 g~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~-~~ei~v~v~~dg~~~~~~~~~~~~~~r-----~----- 236 (467)
T PRK12833 168 GRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIAR-ARHIEVQILGDGERVVHLFERECSLQR-----R----- 236 (467)
T ss_pred CCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-CEEEEEEEEeCCCcEEEEEEeeccccc-----C-----
Confidence 6899999999888641 457999999974 789999888874 22 22221 1100 0
Q ss_pred ccccCCcccCCCCCccccccccCCCC--chHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEeeCCCCC
Q 047754 220 FLPFSQISSNSVDADEEVDLEKTEMP--REGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDINYLPGY 291 (330)
Q Consensus 220 ~~~f~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg~ 291 (330)
. + ++-. ..|.+ .++ ..+.+.++|.++.++||+.-.+ +|++++..+|. +||||||.=++-
T Consensus 237 ---~--~-ki~e-----~~p~~-~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g~-~~~iEvNpR~~~ 298 (467)
T PRK12833 237 ---R--Q-KILE-----EAPSP-SLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGE-FYFIEMNTRIQV 298 (467)
T ss_pred ---C--c-cEEE-----ECCCC-CCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCCC-EEEEEEECCCCc
Confidence 0 0 0000 00111 111 2567889999999999999554 99999854553 799999987764
No 41
>PRK05586 biotin carboxylase; Validated
Probab=99.62 E-value=9.6e-14 Score=138.96 Aligned_cols=177 Identities=12% Similarity=0.186 Sum_probs=121.4
Q ss_pred CCce-ecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE--EecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCC
Q 047754 79 PDVR-IIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQA--VVSETELVTRDMAIEELKLRFPLIAKPLEANGSD 155 (330)
Q Consensus 79 p~v~-viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~ 155 (330)
-|++ +-.+++++..++||..+.+++.+ .|||+|++. .+.+.++... .. ..++||+|+||..++
T Consensus 98 ~gi~~~g~s~~~~~~~~DK~~~k~~l~~-------~GIpvp~~~~~~~~~~~e~~~--~~--~~igyPvvvKP~~gg--- 163 (447)
T PRK05586 98 CNIVFIGPDSETIELMGNKSNAREIMIK-------AGVPVVPGSEGEIENEEEALE--IA--KEIGYPVMVKASAGG--- 163 (447)
T ss_pred CCCcEECcCHHHHHhhCCHHHHHHHHHH-------CCCCCCCCcccccCCHHHHHH--HH--HHcCCCEEEEECCCC---
Confidence 3664 56789999999999999999986 799999873 4565544321 22 578999999998854
Q ss_pred CCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCe---EEEEEeecCCCcchhhhhccCc
Q 047754 156 KSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSS---VKCVKRKSLPDISEEKMKSLKG 219 (330)
Q Consensus 156 ~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~---v~~~~R~S~~~~~~~~~~~~~g 219 (330)
+|+|+.++.++++|.+. +.++++||||+ +++.+.+.|+++. +.....+...
T Consensus 164 gg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~-g~~ei~v~v~~d~~G~~~~~~~~~~~------------ 230 (447)
T PRK05586 164 GGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIE-NPKHIEFQILGDNYGNVVHLGERDCS------------ 230 (447)
T ss_pred CCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCC-CCeEEEEEEEECCCCCEEEEeceecc------------
Confidence 56999999999988542 35799999996 3578998888753 3322111000
Q ss_pred ccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEeeCCCCCC
Q 047754 220 FLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDINYLPGYA 292 (330)
Q Consensus 220 ~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg~~ 292 (330)
+.-+++ +.-. ..|.+ .++. .+.++++|.++.++||+.-.+ +|++++. +|+ +||+|||.=||..
T Consensus 231 -~~~~~~-~~~~-----~~p~~-~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g~-~~~iEvNpR~~~~ 296 (447)
T PRK05586 231 -LQRRNQ-KVLE-----EAPSP-VMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DGN-FYFMEMNTRIQVE 296 (447)
T ss_pred -eEeccc-ceEE-----EcCCC-CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcC-CCC-EEEEEEECCCCCC
Confidence 000000 0000 00111 1221 457889999999999999666 9999984 453 8999999888644
No 42
>PLN02735 carbamoyl-phosphate synthase
Probab=99.60 E-value=1.4e-13 Score=150.70 Aligned_cols=235 Identities=13% Similarity=0.224 Sum_probs=155.5
Q ss_pred CcchHHHHHHHHCCCeEEEeCCCCCC------------------------CcCCCccEEEEccCChhH---HHHHH--HH
Q 047754 24 VIQPSLITKATEQGIGLIRIDPDKPL------------------------TEQGPFDCIMHKLYGPDW---TQQLQ--QF 74 (330)
Q Consensus 24 ~~~~~l~~~~~~~Gi~~~~id~~~~l------------------------~~q~~~DvilhK~~~~~~---~~~l~--~~ 74 (330)
+.-..+++++++.|++++.+|.+-.. ..+..+|+|+.=+.++.. ...+. ..
T Consensus 44 ~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~ 123 (1102)
T PLN02735 44 YSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGI 123 (1102)
T ss_pred chHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCH
Confidence 34456789999999999999987321 012357888876654421 11222 22
Q ss_pred HHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCC-CcEEEeeCCCC
Q 047754 75 SSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLR-FPLIAKPLEAN 152 (330)
Q Consensus 75 ~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a~ 152 (330)
+++ -|++++ .+++++..++||..+.++|.+ .|||+|++..+++.+.... .. ..++ ||+|+||..+.
T Consensus 124 Le~-~GI~~~G~~~~ai~~~~DK~~~k~~l~~-------~GIpvp~~~~v~s~eea~~--~~--~~iG~yPvVVKP~~~~ 191 (1102)
T PLN02735 124 LEK-YGVELIGAKLDAIKKAEDRELFKQAMEK-------IGLKTPPSGIATTLDECFE--IA--EDIGEFPLIIRPAFTL 191 (1102)
T ss_pred HHH-CCCEEECCCHHHHHHhcCHHHHHHHHHH-------CCCCCCCeeEeCCHHHHHH--HH--HHhCCCCEEEEeCCCC
Confidence 333 366554 589999999999999999986 7999999999987654432 22 5677 99999998854
Q ss_pred CCCCCcceEEEeChhhhhcC---------CCCeEEEecccCCCeEEEEEEECC---eEEEEEeecCCCcchhhhhccCcc
Q 047754 153 GSDKSHQMYLIFDNEGLEVL---------EAPILLQEFVNHGGIIFKVYVAGS---SVKCVKRKSLPDISEEKMKSLKGF 220 (330)
Q Consensus 153 Gs~~sh~m~iv~~~~~L~~l---------~~p~vvQefI~h~g~~~Kv~ViG~---~v~~~~R~S~~~~~~~~~~~~~g~ 220 (330)
++.++.++.|+++|... ..++++||||. +.+.|-|-|++| .+..+ .+..++...
T Consensus 192 ---GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~-G~kE~ev~Vl~D~~g~~i~v--~~ie~~dp~-------- 257 (1102)
T PLN02735 192 ---GGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLL-GWKEYELEVMRDLADNVVII--CSIENIDPM-------- 257 (1102)
T ss_pred ---CCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecC-CCeEEEEEEEEcCCCCEEEE--eeEEEEcCC--------
Confidence 44689999999998752 35799999995 347899999976 22211 111111000
Q ss_pred cccCCcccCCCCCccccccccC-CCCc--hHHHHHHHHHHHHHhCC--cEEEEEEEEeCCCCCeeEEEEeeCCCCCCCCC
Q 047754 221 LPFSQISSNSVDADEEVDLEKT-EMPR--EGFVVELSRALREALGL--NLFNFDLIRDAGERDGYLVIDINYLPGYAKLP 295 (330)
Q Consensus 221 ~~f~~~s~~~~~~~~~~~~~~~-~~~~--~~~~~~lA~~~~~~LGl--~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~ 295 (330)
.++.+.. ....|. .+++ .+.++++|.++.++||+ ..+.+|++++..+| .+|||||| |.+.+..
T Consensus 258 -------gvh~G~s--~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g-~~~ViEVN--PR~s~ss 325 (1102)
T PLN02735 258 -------GVHTGDS--ITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDG-EVMIIEMN--PRVSRSS 325 (1102)
T ss_pred -------ccccCCE--EEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCC-cEEEEEec--CCCCCcc
Confidence 0111100 001111 1222 46789999999999998 47789999985345 48999999 5554543
Q ss_pred C
Q 047754 296 G 296 (330)
Q Consensus 296 ~ 296 (330)
.
T Consensus 326 ~ 326 (1102)
T PLN02735 326 A 326 (1102)
T ss_pred h
Confidence 3
No 43
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.60 E-value=1.8e-13 Score=134.30 Aligned_cols=234 Identities=12% Similarity=0.196 Sum_probs=147.6
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCCcCCCccEEEEccCChhHHHHHHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHh
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSR 105 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~~q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~ 105 (330)
+++++.|++.+++.+.+.++.++ ...+.+.+.+ -|++++ .++++++.+.||..+.++|++
T Consensus 17 ~~l~~~~~~~~id~vi~g~E~~l------------------~~~~~d~l~~-~Gi~~~g~s~~a~~l~~dK~~~k~~l~~ 77 (379)
T PRK13790 17 QAILDFAKQQNVDWVVIGPEQPL------------------IDGLADILRA-NGFKVFGPNKQAAQIEGSKLFAKKIMEK 77 (379)
T ss_pred HHHHHHHHHhCCCEEEECCcHHH------------------HHHHHHHHHh-CCCcEECCCHHHHHHhCCHHHHHHHHHH
Confidence 66888899999988887775222 2334444444 378777 566999999999999999986
Q ss_pred hhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC---------CCCe
Q 047754 106 LKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL---------EAPI 176 (330)
Q Consensus 106 ~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~ 176 (330)
++||+|++..+.+.++... .+ ..++||+|+||..+ + +|.|+.++.+.+++... ..++
T Consensus 78 -------~gIptp~~~~~~~~~ea~~--~~--~~~g~PvVvKp~~~--~-~gkGV~iv~~~~el~~a~~~~~~~~~~~~v 143 (379)
T PRK13790 78 -------YNIPTADYKEVERKKDALT--YI--ENCELPVVVKKDGL--A-AGKGVIIADTIEAARSAIEIMYGDEEEGTV 143 (379)
T ss_pred -------CCCCCCCEEEECCHHHHHH--HH--HhcCCCEEEEeCCC--C-CCCCEEEECCHHHHHHHHHHHHhcCCCCeE
Confidence 8999999998887654432 23 46899999999864 3 57899999999888641 3479
Q ss_pred EEEecccCCCeEEEEEEE--CCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccC-CCCc---hHHH
Q 047754 177 LLQEFVNHGGIIFKVYVA--GSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKT-EMPR---EGFV 250 (330)
Q Consensus 177 vvQefI~h~g~~~Kv~Vi--G~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~-~~~~---~~~~ 250 (330)
++||||. |..+-|.++ |+.++.. ... .. +.+ ..|..+. +...++. +...+. .+++ ++..
T Consensus 144 lvEe~i~--G~E~sv~~~~~g~~~~~~--~~~---~~-~~k---r~~~~d~--g~~tgg~--~~~~p~~~l~~~~~~~~~ 208 (379)
T PRK13790 144 VFETFLE--GEEFSLMTFVNGDLAVPF--DCI---AQ-DHK---RAFDHDE--GPNTGGM--GAYCPVPHISDDVLKLTN 208 (379)
T ss_pred EEEEccc--CceEEEEEEeeCCEEEec--ccc---cc-ccc---ccccCCC--CCcCCCC--ceEeeCCCCCHHHHHHHH
Confidence 9999995 677766655 4433211 000 00 000 0111111 1111111 111111 1111 1223
Q ss_pred HHHHHHHHHHh---CCcEEE---EEEEEeCCCCCeeEEEEeeCCCCCCCC----CCcHHHHHHHHHHHHHh
Q 047754 251 VELSRALREAL---GLNLFN---FDLIRDAGERDGYLVIDINYLPGYAKL----PGYETLLMDFFLNVAKS 311 (330)
Q Consensus 251 ~~lA~~~~~~L---Gl~l~G---vDvi~~~~~g~~~~ViEVN~fPg~~g~----~~~~~~l~~~i~~~~~~ 311 (330)
++++.++.++| |+.++| +|++++. +| ++|+|+|.=||--.. +.....|.+.+.+....
T Consensus 209 ~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~-~g--~~viEiN~R~G~pe~~~~~~~~~~Dl~~~~~~~~~g 276 (379)
T PRK13790 209 ETIAQPIAKAMLNEGYQFFGVLYIGAILTK-DG--PKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEG 276 (379)
T ss_pred HHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--eEEEEEEcccCCCcceeeecccCCCHHHHHHHHHcC
Confidence 78888888888 667666 5999874 33 689999998764332 22345666777666644
No 44
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.59 E-value=3.3e-13 Score=135.11 Aligned_cols=227 Identities=12% Similarity=0.174 Sum_probs=145.0
Q ss_pred chHHHHHHHHCCCeEEEeCCCC--C-----CCc-------------------------CCCccEEEEccC--ChhHHHHH
Q 047754 26 QPSLITKATEQGIGLIRIDPDK--P-----LTE-------------------------QGPFDCIMHKLY--GPDWTQQL 71 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~--~-----l~~-------------------------q~~~DvilhK~~--~~~~~~~l 71 (330)
..+++++|+++|++++.+|.+. + +.+ ...+|+|+.-.. .+. ..+
T Consensus 14 ~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~--~~~ 91 (449)
T TIGR00514 14 ALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSEN--ANF 91 (449)
T ss_pred HHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEeCCCccccC--HHH
Confidence 4568899999999999997631 1 010 013556555331 111 123
Q ss_pred HHHHHhCCCcee-cChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE--EecCchhhhhhHHHHHhcCCCcEEEee
Q 047754 72 QQFSSRNPDVRI-IDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQA--VVSETELVTRDMAIEELKLRFPLIAKP 148 (330)
Q Consensus 72 ~~~~~~~p~v~v-iDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~l~~~~l~fP~VvKp 148 (330)
.+.+++. |+++ -.+++++..++||..+.++|.+ .|||+|++. .+.+.++... .. ..++||+|+||
T Consensus 92 a~~~e~~-Gi~~~g~~~~~~~~~~DK~~~r~~l~~-------~gip~pp~~~~~~~~~~e~~~--~~--~~ig~PvvvKP 159 (449)
T TIGR00514 92 AEQCERS-GFTFIGPSAESIRLMGDKVSAIETMKK-------AGVPCVPGSDGLVEDEEENVR--IA--KRIGYPVIIKA 159 (449)
T ss_pred HHHHHHC-CCcEECcCHHHHHHhCCHHHHHHHHHH-------CCCCCCCCcccCcCCHHHHHH--HH--HHhCCCEEEEe
Confidence 3334443 6764 4789999999999999999986 799998864 4555444321 22 56899999999
Q ss_pred CCCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECC---eEEEEEeecCCCcchh
Q 047754 149 LEANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGS---SVKCVKRKSLPDISEE 212 (330)
Q Consensus 149 ~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~---~v~~~~R~S~~~~~~~ 212 (330)
..++ +|+|+.++.+.++|... ..++++||||+ +++.+-+-++++ ++.....+ +.
T Consensus 160 ~~g~---gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~---~~--- 229 (449)
T TIGR00514 160 TAGG---GGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIE-NPRHVEIQVLADKYGNAIYLGER---DC--- 229 (449)
T ss_pred CCCC---CCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCC-CCeEEEEEEEEcCCCCEEEEecc---cc---
Confidence 8864 46899999999888642 34799999996 467787777764 33322110 00
Q ss_pred hhhccCcccccCCcccCCCCCccccccccCCCC--chHHHHHHHHHHHHHhCCcEE-EEEEEEeCCCCCeeEEEEeeCCC
Q 047754 213 KMKSLKGFLPFSQISSNSVDADEEVDLEKTEMP--REGFVVELSRALREALGLNLF-NFDLIRDAGERDGYLVIDINYLP 289 (330)
Q Consensus 213 ~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~lA~~~~~~LGl~l~-GvDvi~~~~~g~~~~ViEVN~fP 289 (330)
.+..... ++- ...+. ..++ ..+.++++|.++.++||+.-. .+|++++. +|. +||+|||.=+
T Consensus 230 -------~~~~~~~-~~~-----~~~p~-~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~-~g~-~~viEiNpR~ 293 (449)
T TIGR00514 230 -------SIQRRHQ-KLL-----EEAPS-PALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDK-NGE-FYFMEMNTRI 293 (449)
T ss_pred -------Cceeccc-ceE-----EECCC-CCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeC-CCC-EEEEEEECCC
Confidence 0000000 000 00011 1122 146788999999999999844 49999984 343 7999999877
Q ss_pred CCC
Q 047754 290 GYA 292 (330)
Q Consensus 290 g~~ 292 (330)
|-.
T Consensus 294 ~~~ 296 (449)
T TIGR00514 294 QVE 296 (449)
T ss_pred CCC
Confidence 643
No 45
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.59 E-value=3.4e-13 Score=135.95 Aligned_cols=224 Identities=14% Similarity=0.228 Sum_probs=144.2
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCC-------cC------------------------CCccEEEEcc--CChhHHHHHHH
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLT-------EQ------------------------GPFDCIMHKL--YGPDWTQQLQQ 73 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~-------~q------------------------~~~DvilhK~--~~~~~~~~l~~ 73 (330)
.+++++|+++|++++.++.+.+-. ++ ...|+|+.=. ..+. ..+.+
T Consensus 15 ~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g~lse~--~~~a~ 92 (472)
T PRK07178 15 VRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYGFLSEN--AELAE 92 (472)
T ss_pred HHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCCCcccC--HHHHH
Confidence 468899999999999987663210 00 1345555421 0111 12334
Q ss_pred HHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEE--ecCchhhhhhHHHHHhcCCCcEEEeeCC
Q 047754 74 FSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAV--VSETELVTRDMAIEELKLRFPLIAKPLE 150 (330)
Q Consensus 74 ~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~~ 150 (330)
.+++. |++++ .++++++.+.||..+.+++.+ .|||+|++.. +.+.++... . ...++||+|+||..
T Consensus 93 ~~e~~-Gi~~igps~~~i~~~~DK~~~r~~l~~-------~GIp~pp~~~~~~~~~~e~~~--~--~~~igyPvvvKp~~ 160 (472)
T PRK07178 93 ICAER-GIKFIGPSAEVIRRMGDKTEARRAMIK-------AGVPVTPGSEGNLADLDEALA--E--AERIGYPVMLKATS 160 (472)
T ss_pred HHHHc-CCCccCCCHHHHHHhcCHHHHHHHHHH-------CCCCCCCCcCcCCCCHHHHHH--H--HHHcCCcEEEEeCC
Confidence 44443 77755 678999999999999999986 7999988753 444443321 2 26789999999988
Q ss_pred CCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCe---EEE-EEeecCCCcchhh
Q 047754 151 ANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSS---VKC-VKRKSLPDISEEK 213 (330)
Q Consensus 151 a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~---v~~-~~R~S~~~~~~~~ 213 (330)
++ +|+||.++.++++|.+. +.++++|+||. +++.+-|-|+++. ++. ..|.- .+
T Consensus 161 gg---Gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~-~~~eiev~v~~d~~G~~v~~~er~~--s~---- 230 (472)
T PRK07178 161 GG---GGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIV-NPKHIEVQILADSHGNVVHLFERDC--SI---- 230 (472)
T ss_pred CC---CCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCeEEEEEEEEECCCCEEEEEcccc--ce----
Confidence 54 46999999999998641 34799999996 4777877777642 322 21210 00
Q ss_pred hhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEeeCCCC
Q 047754 214 MKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 214 ~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg 290 (330)
.-.++ ++. +..|. ..+++ .+.++++|.++.++||+.-.| +|++++. +| .+||+|||.=++
T Consensus 231 --------~~~~~-~~~-----e~~P~-~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~-~g-~~y~iEiNpRl~ 293 (472)
T PRK07178 231 --------QRRNQ-KLI-----EIAPS-PQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDA-DG-EVYFMEMNTRVQ 293 (472)
T ss_pred --------EecCc-ceE-----EECCC-CCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeC-CC-CEEEEEEeCCcC
Confidence 00000 000 00011 12222 456889999999999997655 9999974 34 379999998775
Q ss_pred C
Q 047754 291 Y 291 (330)
Q Consensus 291 ~ 291 (330)
-
T Consensus 294 ~ 294 (472)
T PRK07178 294 V 294 (472)
T ss_pred C
Confidence 4
No 46
>PLN02735 carbamoyl-phosphate synthase
Probab=99.58 E-value=2.2e-13 Score=149.19 Aligned_cols=226 Identities=14% Similarity=0.243 Sum_probs=154.8
Q ss_pred HHHHHHHHCCCeEEEeCCCCCCCc------------------------CCCccEEEEccCChh---HHHHHHHHHHhCC-
Q 047754 28 SLITKATEQGIGLIRIDPDKPLTE------------------------QGPFDCIMHKLYGPD---WTQQLQQFSSRNP- 79 (330)
Q Consensus 28 ~l~~~~~~~Gi~~~~id~~~~l~~------------------------q~~~DvilhK~~~~~---~~~~l~~~~~~~p- 79 (330)
..+.+++++|++.+.+|-+-.... ....|+|+.-..++. ....+.+++.+++
T Consensus 599 ~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~ 678 (1102)
T PLN02735 599 HASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPP 678 (1102)
T ss_pred HHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccc
Confidence 367889999999999988742210 124577776555432 2345556655443
Q ss_pred -------Cc-eecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCC
Q 047754 80 -------DV-RIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEA 151 (330)
Q Consensus 80 -------~v-~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a 151 (330)
|+ ++-.++++++.+.||..+.++|.+ .|||+|++..+.+.++... . ...++||+|+||..+
T Consensus 679 fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~-------~GIp~p~~~~v~s~eea~~--~--a~~iGyPvvVKP~~g 747 (1102)
T PLN02735 679 PSASGNGNVKIWGTSPDSIDAAEDRERFNAILNE-------LKIEQPKGGIARSEADALA--I--AKRIGYPVVVRPSYV 747 (1102)
T ss_pred hhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCeeEeCCHHHHHH--H--HHhcCCCeEEEeCCC
Confidence 43 456789999999999999999986 7999999998887654432 2 267999999999885
Q ss_pred CCCCCCcceEEEeChhhhhcC---------CCCeEEEecccCCCeEEEEEEECC---eEEE-EEeecCCCcchhhhhccC
Q 047754 152 NGSDKSHQMYLIFDNEGLEVL---------EAPILLQEFVNHGGIIFKVYVAGS---SVKC-VKRKSLPDISEEKMKSLK 218 (330)
Q Consensus 152 ~Gs~~sh~m~iv~~~~~L~~l---------~~p~vvQefI~h~g~~~Kv~ViG~---~v~~-~~R~S~~~~~~~~~~~~~ 218 (330)
. +|.||.++.+.++|..+ +.|+++|+||+ +|+.+-|-+++| ++.+ ..+..... .
T Consensus 748 ~---gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~-~g~Ei~V~vl~D~~G~vv~~~i~e~~~~---------~ 814 (1102)
T PLN02735 748 L---GGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLS-DATEIDVDALADSEGNVVIGGIMEHIEQ---------A 814 (1102)
T ss_pred C---CCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecC-CcEEEEEEEEECCCCCEEEecceEeeec---------c
Confidence 3 45899999999998752 35899999996 489999999975 3321 11110000 0
Q ss_pred cccccCCcccCCCCCccccccccC-CCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 219 GFLPFSQISSNSVDADEEVDLEKT-EMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 219 g~~~f~~~s~~~~~~~~~~~~~~~-~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
.++++... ...+. .+++ .++++++|.++.++||+. ++.+|++++. +| .+||+|||.-||
T Consensus 815 ---------gvhsGds~--~~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~-dg-~~yviEiNpR~s 877 (1102)
T PLN02735 815 ---------GVHSGDSA--CSLPTQTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAITP-SG-EVYIIEANPRAS 877 (1102)
T ss_pred ---------CccCCCcc--EEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeeEEEEEcC-CC-cEEEEEEeCCCC
Confidence 11111100 00111 2221 467889999999999988 5569999963 34 379999999998
No 47
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.58 E-value=4.4e-13 Score=134.06 Aligned_cols=227 Identities=11% Similarity=0.139 Sum_probs=143.5
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCC-------Cc-------------------------CCCccEEEEccCCh-hHHHHHHH
Q 047754 27 PSLITKATEQGIGLIRIDPDKPL-------TE-------------------------QGPFDCIMHKLYGP-DWTQQLQQ 73 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l-------~~-------------------------q~~~DvilhK~~~~-~~~~~l~~ 73 (330)
..++++|+++|++++.++.+.+- .+ ...+|+|+.-.... .. ..+.+
T Consensus 15 ~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p~~~~~~e~-~~~~~ 93 (451)
T PRK08591 15 LRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPGYGFLSEN-ADFAE 93 (451)
T ss_pred HHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEECCCccccC-HHHHH
Confidence 45788999999999998554211 00 01245555432110 11 12333
Q ss_pred HHHhCCCcee-cChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcE--EEecCchhhhhhHHHHHhcCCCcEEEeeCC
Q 047754 74 FSSRNPDVRI-IDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQ--AVVSETELVTRDMAIEELKLRFPLIAKPLE 150 (330)
Q Consensus 74 ~~~~~p~v~v-iDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~--~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~ 150 (330)
.+++ -|+++ -.+++++..++||..+.+++.+ .|||+|++ ..+.+.++... . ...++||+|+||..
T Consensus 94 ~~e~-~gi~~~g~~~~~~~~~~DK~~~r~~l~~-------~gIp~pp~~~~~v~~~~~~~~---~-~~~~g~PvvvKP~~ 161 (451)
T PRK08591 94 ICED-SGFTFIGPSAETIRLMGDKVTAKATMKK-------AGVPVVPGSDGPVDDEEEALA---I-AKEIGYPVIIKATA 161 (451)
T ss_pred HHHH-CCCceECcCHHHHHHhcCHHHHHHHHHH-------cCCCCCCCcccccCCHHHHHH---H-HHHcCCCEEEEECC
Confidence 3333 36765 4789999999999999999986 79999886 35555544332 2 25789999999988
Q ss_pred CCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECC---eEEEEEeecCCCcchhhh
Q 047754 151 ANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGS---SVKCVKRKSLPDISEEKM 214 (330)
Q Consensus 151 a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~---~v~~~~R~S~~~~~~~~~ 214 (330)
++ +|.|+.++.++++|.+. +..+++||||+ +++.+-+-+++| ++....-+.. .+
T Consensus 162 g~---gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~-~~----- 231 (451)
T PRK08591 162 GG---GGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLE-NPRHIEIQVLADGHGNAIHLGERDC-SL----- 231 (451)
T ss_pred CC---CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC-CCcEEEEEEEEcCCCCEEEEecccc-cc-----
Confidence 64 46899999999988642 35699999996 366788777764 3332211000 00
Q ss_pred hccCcccccCCcccCCCCCccccccccCCCC--chHHHHHHHHHHHHHhCCcEE-EEEEEEeCCCCCeeEEEEeeCCCCC
Q 047754 215 KSLKGFLPFSQISSNSVDADEEVDLEKTEMP--REGFVVELSRALREALGLNLF-NFDLIRDAGERDGYLVIDINYLPGY 291 (330)
Q Consensus 215 ~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~lA~~~~~~LGl~l~-GvDvi~~~~~g~~~~ViEVN~fPg~ 291 (330)
. ..+. ++.. ..+.. .++ ..+.+.++|.++.++||+.-. .||++++. +| .+||+|||.=++-
T Consensus 232 ~------~~~~--~~~~-----~~p~~-~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g-~~~viEINpR~~~ 295 (451)
T PRK08591 232 Q------RRHQ--KVLE-----EAPSP-AITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NG-EFYFIEMNTRIQV 295 (451)
T ss_pred e------ecce--eEEE-----ECCCC-CCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcC-CC-CEEEEEEECCCCc
Confidence 0 0000 0000 00110 111 256788999999999999844 49999984 44 3799999987764
Q ss_pred C
Q 047754 292 A 292 (330)
Q Consensus 292 ~ 292 (330)
.
T Consensus 296 ~ 296 (451)
T PRK08591 296 E 296 (451)
T ss_pred c
Confidence 3
No 48
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.58 E-value=6.2e-13 Score=134.29 Aligned_cols=226 Identities=12% Similarity=0.159 Sum_probs=143.4
Q ss_pred chHHHHHHHHCCCeEEEeCCCCCC-------Cc------------------------CCCccEEEEccCCh-hHHHHHHH
Q 047754 26 QPSLITKATEQGIGLIRIDPDKPL-------TE------------------------QGPFDCIMHKLYGP-DWTQQLQQ 73 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~l-------~~------------------------q~~~DvilhK~~~~-~~~~~l~~ 73 (330)
.-+++++|+++|++++.++.+.+. .+ ...+|+|+.=.... .. ..+.+
T Consensus 14 a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~~~~y~d~~~i~~~a~~~~iDaI~pg~g~lsE~-~~~a~ 92 (478)
T PRK08463 14 AVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPIKGYLDVKRIVEIAKACGADAIHPGYGFLSEN-YEFAK 92 (478)
T ss_pred HHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCchhcccCHHHHHHHHHHhCCCEEEECCCccccC-HHHHH
Confidence 356889999999998888765211 00 11245555421110 11 12333
Q ss_pred HHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcE-EEec--CchhhhhhHHHHHhcCCCcEEEeeC
Q 047754 74 FSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQ-AVVS--ETELVTRDMAIEELKLRFPLIAKPL 149 (330)
Q Consensus 74 ~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~-~~~~--~~~~~~~~~~l~~~~l~fP~VvKp~ 149 (330)
.+.+ -|++++ .++++++.++||..+.+++.+ .|||+|+. .... +.++.. .. ...++||+|+||.
T Consensus 93 ~~e~-~Gi~~iGps~~~i~~~~DK~~~k~~l~~-------~gIpvpp~~~~~~~~~~~~~~---~~-~~~igyPvvvKP~ 160 (478)
T PRK08463 93 AVED-AGIIFIGPKSEVIRKMGNKNIARYLMKK-------NGIPIVPGTEKLNSESMEEIK---IF-ARKIGYPVILKAS 160 (478)
T ss_pred HHHH-CCCceecCCHHHHHhhCcHHHHHHHHHH-------cCCCCCCCccccCCCCHHHHH---HH-HHHhCCCEEEEeC
Confidence 3334 377776 569999999999999999986 79999774 3332 222222 22 2578999999998
Q ss_pred CCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCe---EEE-EEee-cCCCcch
Q 047754 150 EANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSS---VKC-VKRK-SLPDISE 211 (330)
Q Consensus 150 ~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~---v~~-~~R~-S~~~~~~ 211 (330)
.++ +|.||.++.++++|... +.++++|+||+ +++.+-+-|+|+. +.. ..|- +.
T Consensus 161 ~gg---Gg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~-~~~~iev~v~~d~~g~v~~~~er~~s~----- 231 (478)
T PRK08463 161 GGG---GGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVV-NPRHIEFQILGDNYGNIIHLCERDCSI----- 231 (478)
T ss_pred CCC---CCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC-CCeEEEEEEEEcCCCCEEEEeccCCcc-----
Confidence 854 46899999999988541 35799999997 3677777777663 322 2221 11
Q ss_pred hhhhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEeeCC
Q 047754 212 EKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDINYL 288 (330)
Q Consensus 212 ~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEVN~f 288 (330)
...++ ++- ...|.+ .+++ .+.++++|.++.++||+.-+| +|++++. ++ .+||+|||.=
T Consensus 232 ----------~~~~~-~~i-----e~~P~~-~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~-~~y~iEiN~R 292 (478)
T PRK08463 232 ----------QRRHQ-KVI-----EIAPCP-SISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YN-RFYFMEMNTR 292 (478)
T ss_pred ----------ccccC-ceE-----EECCCC-CCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CC-CEEEEEEECC
Confidence 00000 000 000111 1211 456789999999999998766 9999985 34 3899999977
Q ss_pred CCCC
Q 047754 289 PGYA 292 (330)
Q Consensus 289 Pg~~ 292 (330)
++-.
T Consensus 293 ~~~~ 296 (478)
T PRK08463 293 IQVE 296 (478)
T ss_pred cCCC
Confidence 7644
No 49
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.57 E-value=3.4e-13 Score=136.75 Aligned_cols=223 Identities=12% Similarity=0.189 Sum_probs=145.1
Q ss_pred hHHHHHHHHCCCeEEEeCCCCC---C----Cc-------------------------CCCccEEEEccC--ChhHHHHHH
Q 047754 27 PSLITKATEQGIGLIRIDPDKP---L----TE-------------------------QGPFDCIMHKLY--GPDWTQQLQ 72 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~---l----~~-------------------------q~~~DvilhK~~--~~~~~~~l~ 72 (330)
-+++++|+++|++++.++.+.+ + .+ +..+|+|+.-.. .+. ..+.
T Consensus 15 ~~iiraar~lGi~~V~v~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~--~~~a 92 (499)
T PRK08654 15 IRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHPGYGFLAEN--PEFA 92 (499)
T ss_pred HHHHHHHHHcCCeEEEEeccccccccchhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEECCCccccC--HHHH
Confidence 4578999999999888854421 1 10 012344443211 111 1233
Q ss_pred HHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEE--ecCchhhhhhHHHHHhcCCCcEEEeeC
Q 047754 73 QFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAV--VSETELVTRDMAIEELKLRFPLIAKPL 149 (330)
Q Consensus 73 ~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~ 149 (330)
+.+++ -|++++ .++++++.+.||..+.+++.+ .|||+|++.. +.+.++... .. ..++||+|+||.
T Consensus 93 ~~~e~-~gi~~iGps~~~i~~~~DK~~~k~~l~~-------~GVpv~p~~~~~v~~~~e~~~--~a--~~igyPvvIKp~ 160 (499)
T PRK08654 93 KACEK-AGIVFIGPSSDVIEAMGSKINAKKLMKK-------AGVPVLPGTEEGIEDIEEAKE--IA--EEIGYPVIIKAS 160 (499)
T ss_pred HHHHH-CCCcEECCCHHHHHHhCCHHHHHHHHHH-------cCcCCCCCcCcCCCCHHHHHH--HH--HHhCCCEEEEeC
Confidence 33333 377766 568999999999999999986 7999988764 444443322 22 678999999998
Q ss_pred CCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCe---EE-EEEee-cCCCcch
Q 047754 150 EANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSS---VK-CVKRK-SLPDISE 211 (330)
Q Consensus 150 ~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~---v~-~~~R~-S~~~~~~ 211 (330)
.++ +|.||.++.++++|.+. +.++++|+||. +++.+.|-|+||. ++ ...|. |..
T Consensus 161 ~Gg---GG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~-~~r~ieVqvl~d~~G~vv~l~~recsiq---- 232 (499)
T PRK08654 161 AGG---GGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLE-KPRHIEIQILADKHGNVIHLGDRECSIQ---- 232 (499)
T ss_pred CCC---CCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeeeccccc----
Confidence 864 46899999999988642 35799999997 4678888888764 32 22232 110
Q ss_pred hhhhccCcccccCCcccCCCCCccccccccCCCC--chHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEeeCC
Q 047754 212 EKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMP--REGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDINYL 288 (330)
Q Consensus 212 ~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEVN~f 288 (330)
..++ ++- +..|.+ .++ ..+.+.++|.++.++||+.-.| ||+++++ + .+|++|||.=
T Consensus 233 -----------rr~q-k~i-----e~~Pa~-~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~~--g-~~yflEiNpR 291 (499)
T PRK08654 233 -----------RRHQ-KLI-----EEAPSP-IMTPELRERMGEAAVKAAKAINYENAGTVEFLYSN--G-NFYFLEMNTR 291 (499)
T ss_pred -----------cCcc-ceE-----EECCCC-CCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEEC--C-cEEEEEEECC
Confidence 0000 110 001111 111 2567889999999999999777 9999863 3 4899999988
Q ss_pred CCCC
Q 047754 289 PGYA 292 (330)
Q Consensus 289 Pg~~ 292 (330)
++..
T Consensus 292 lqve 295 (499)
T PRK08654 292 LQVE 295 (499)
T ss_pred CCCC
Confidence 8644
No 50
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.57 E-value=4.9e-13 Score=144.21 Aligned_cols=224 Identities=15% Similarity=0.171 Sum_probs=143.6
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCC-Cc-CCCccE-EEEccCCh--------------------hHHHHHHHHHHhCCCcee
Q 047754 27 PSLITKATEQGIGLIRIDPDKPL-TE-QGPFDC-IMHKLYGP--------------------DWTQQLQQFSSRNPDVRI 83 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l-~~-q~~~Dv-ilhK~~~~--------------------~~~~~l~~~~~~~p~v~v 83 (330)
..|+.+|+++|++++.++.+.+. .. +.-.|. +.+...+. ...-.+...+.++-|++.
T Consensus 17 ~~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~~~i~~V~~~se~~v~~aa~lae~lglpg 96 (887)
T PRK02186 17 ELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISADTSDPDRIHRFVSSLDGVAGIMSSSEYFIEVASEVARRLGLPA 96 (887)
T ss_pred HHHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEcCCCCHHHHHHHHHhcCCCCEEEeCchhhHHHHHHHHHHhCcCC
Confidence 44788999999999999865321 10 101111 11221110 111122233334346664
Q ss_pred cChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEE
Q 047754 84 IDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLI 163 (330)
Q Consensus 84 iDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv 163 (330)
++++++..++||..|.+.|.+ .||++|++..+.+.++... .. ..++||+|+||..+. +|.|+.++
T Consensus 97 -~~~ea~~~~~dK~~~r~~L~~-------~GIp~P~~~~v~~~~e~~~--~~--~~~~~PvVVKP~~g~---gS~GV~~v 161 (887)
T PRK02186 97 -ANTEAIRTCRDKKRLARTLRD-------HGIDVPRTHALALRAVALD--AL--DGLTYPVVVKPRMGS---GSVGVRLC 161 (887)
T ss_pred -CCHHHHHHhcCHHHHHHHHHH-------cCCCCCCEEEeCCHHHHHH--HH--HhCCCCEEEEeCCCC---CCCCeEEE
Confidence 567999999999999999986 7999999999988655432 22 568999999999864 45899999
Q ss_pred eChhhhhcC--------CCCeEEEecccCCCeEEEE--EEECCeEE--EEEeecCCCcchhhhhccCcccccCCcccCCC
Q 047754 164 FDNEGLEVL--------EAPILLQEFVNHGGIIFKV--YVAGSSVK--CVKRKSLPDISEEKMKSLKGFLPFSQISSNSV 231 (330)
Q Consensus 164 ~~~~~L~~l--------~~p~vvQefI~h~g~~~Kv--~ViG~~v~--~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~ 231 (330)
.|.++|.+. +.++++||||+ |..|-| ++.++.+. ...++.... .+ .|-. .
T Consensus 162 ~~~~el~~a~~~~~~~~~~~~lvEEfI~--G~E~sVe~i~~~g~~~i~~i~~k~~~~----------~~-~~ve-----~ 223 (887)
T PRK02186 162 ASVAEAAAHCAALRRAGTRAALVQAYVE--GDEYSVETLTVARGHQVLGITRKHLGP----------PP-HFVE-----I 223 (887)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEeeccc--CCcEEEEEEEECCcEEEEEEEeeecCC----------CC-CeEE-----e
Confidence 999888652 46899999995 667755 44444433 333432210 00 0100 0
Q ss_pred CCccccccccCCCC--chHHHHHHHHHHHHHhCC--cEEEEEEEEeCCCCCeeEEEEeeCCCCC
Q 047754 232 DADEEVDLEKTEMP--REGFVVELSRALREALGL--NLFNFDLIRDAGERDGYLVIDINYLPGY 291 (330)
Q Consensus 232 ~~~~~~~~~~~~~~--~~~~~~~lA~~~~~~LGl--~l~GvDvi~~~~~g~~~~ViEVN~fPg~ 291 (330)
+...+..++ ..+.+.+++.++.++||+ ..+++|+++++ +| ++|||||.=+|=
T Consensus 224 -----g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~-~g--~~liEIn~R~~G 279 (887)
T PRK02186 224 -----GHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRG-DT--VVIIEINPRLAG 279 (887)
T ss_pred -----ccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEEC-CC--EEEEEECCCCCC
Confidence 001111111 246788999999999999 46889999974 33 799999986653
No 51
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.56 E-value=8.2e-13 Score=131.87 Aligned_cols=235 Identities=12% Similarity=0.114 Sum_probs=145.9
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCCcCCCccEEEEccCChhHHHHHHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHh
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSR 105 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~~q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~ 105 (330)
+.+++.|++.+++++.+.++.+ . ...+.+.+.++ |++++ -+.++++.+.||..+-++|.+
T Consensus 52 ~~l~~~a~~~~id~vvvg~E~~-----------------l-v~~~~d~l~~~-Gi~~~Gps~~aa~l~~dK~~~K~~l~~ 112 (434)
T PLN02257 52 AAVISFCRKWGVGLVVVGPEAP-----------------L-VAGLADDLVKA-GIPTFGPSAEAAALEGSKNFMKDLCDK 112 (434)
T ss_pred HHHHHHHHHcCCCEEEECCchH-----------------H-HHHHHHHHHHC-CCCEECChHHHHHHHcCHHHHHHHHHH
Confidence 4466666666666655544311 1 23444444443 78766 677899999999999999986
Q ss_pred hhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC-------------
Q 047754 106 LKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL------------- 172 (330)
Q Consensus 106 ~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------------- 172 (330)
++||+|++..+.+.++... .+ ..++||+|+||..+ + +|.|+.++.+.+++.+.
T Consensus 113 -------~GIptp~~~~~~~~~e~~~--~~--~~~g~PvVVKp~~~--~-~GkGV~iv~~~~el~~a~~~~~~~~~fg~~ 178 (434)
T PLN02257 113 -------YKIPTAKYETFTDPAAAKK--YI--KEQGAPIVVKADGL--A-AGKGVVVAMTLEEAYEAVDSMLVKGAFGSA 178 (434)
T ss_pred -------cCCCCCCeEEeCCHHHHHH--HH--HHcCCCEEEEcCCC--C-CCCCEEEECCHHHHHHHHHHHHhhhhccCC
Confidence 8999999999887665432 23 56899999999853 3 57899999999877531
Q ss_pred CCCeEEEecccCCCeEEEEEEECC-e-EEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccC-CCCc--h
Q 047754 173 EAPILLQEFVNHGGIIFKVYVAGS-S-VKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKT-EMPR--E 247 (330)
Q Consensus 173 ~~p~vvQefI~h~g~~~Kv~ViG~-~-v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~-~~~~--~ 247 (330)
..++++|||| .|..+-|.++.| + ++.. ..+. ....+|+++. +...+.- +...+. .+++ .
T Consensus 179 ~~~vlIEefi--~G~E~Sv~~~~dG~~~~pl----~~~~------dhkr~~d~d~--g~ntggm--g~~sp~p~l~~~~~ 242 (434)
T PLN02257 179 GSEVVVEEFL--DGEEASFFALVDGENAIPL----ESAQ------DHKRVGDGDT--GPNTGGM--GAYSPAPVLTPELE 242 (434)
T ss_pred CCeEEEEECC--CCCEEEEEEEECCCcEEEE----Eeee------ecccccCCCC--CCCCCCC--eeEecCCCCCHHHH
Confidence 2579999999 478998866543 2 2211 1110 0112333333 2222211 111221 1221 1
Q ss_pred HH-HHHHHH---HHHHHhCCcEEE---EEEEEeCCCCCeeEEEEeeCCCCCCCC----CCcHHHHHHHHHHHHHh
Q 047754 248 GF-VVELSR---ALREALGLNLFN---FDLIRDAGERDGYLVIDINYLPGYAKL----PGYETLLMDFFLNVAKS 311 (330)
Q Consensus 248 ~~-~~~lA~---~~~~~LGl~l~G---vDvi~~~~~g~~~~ViEVN~fPg~~g~----~~~~~~l~~~i~~~~~~ 311 (330)
++ .++++. ++.++.|+.+.| +|++++..+|+ ++|+|+|.-||.... +.....|++.+...+..
T Consensus 243 ~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g~-p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g 316 (434)
T PLN02257 243 SKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSGL-PKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKG 316 (434)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCCC-EEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcC
Confidence 11 233333 334578887666 89998722343 689999999997533 34567788877777654
No 52
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.55 E-value=1.3e-12 Score=143.28 Aligned_cols=222 Identities=15% Similarity=0.277 Sum_probs=149.4
Q ss_pred HHHHHHHHCCCeEEEeCCCCCCC-------c-----------------CCCccEEEEccCChhHHHHHHHHHHhCCCcee
Q 047754 28 SLITKATEQGIGLIRIDPDKPLT-------E-----------------QGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRI 83 (330)
Q Consensus 28 ~l~~~~~~~Gi~~~~id~~~~l~-------~-----------------q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~v 83 (330)
..++++++.|++++.+|.+-... + ...+|.|+.-..++. ...+..-+.+ .|+.+
T Consensus 580 ~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~ep~~~e~vl~I~~~e~~dgVI~~~g~~~-~~~la~~le~-~Gi~i 657 (1068)
T PRK12815 580 HAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIKGVIVQFGGQT-AINLAKGLEE-AGLTI 657 (1068)
T ss_pred HHHHHHHHcCCEEEEEeCCccccccccccCceEEEccCCHHHHHHHHhhcCCCEEEEecCcHH-HHHHHHHHHH-CCCeE
Confidence 35788999999999999883210 0 123555555444433 2333333333 36766
Q ss_pred c-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEE
Q 047754 84 I-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYL 162 (330)
Q Consensus 84 i-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i 162 (330)
+ .+++++..+.||..+.++|.+ .||++|++..+.+.++... . ...++||+|+||..+. +|.+|.+
T Consensus 658 lG~s~e~i~~~~DK~~f~~ll~~-------~GIp~P~~~~~~s~ee~~~--~--~~~igyPvVVKP~~~~---Gg~gv~i 723 (1068)
T PRK12815 658 LGTSPDTIDRLEDRDRFYQLLDE-------LGLPHVPGLTATDEEEAFA--F--AKRIGYPVLIRPSYVI---GGQGMAV 723 (1068)
T ss_pred ECCcHHHHHHHcCHHHHHHHHHH-------cCcCCCCeEEeCCHHHHHH--H--HHhcCCCEEEEeCCCC---CCCCEEE
Confidence 5 679999999999999999986 7999999999988766542 2 2678999999998854 5689999
Q ss_pred EeChhhhhcC-------CCCeEEEecccCCCeEEEEEEECC--eEEEE--EeecCCCcchhhhhccCcccccCCcccCCC
Q 047754 163 IFDNEGLEVL-------EAPILLQEFVNHGGIIFKVYVAGS--SVKCV--KRKSLPDISEEKMKSLKGFLPFSQISSNSV 231 (330)
Q Consensus 163 v~~~~~L~~l-------~~p~vvQefI~h~g~~~Kv~ViG~--~v~~~--~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~ 231 (330)
+.++++|..+ ..|+++|||| .|..+-|-++.| .+.+. +...-+ .| .++
T Consensus 724 v~~~eeL~~~l~~~~s~~~~vlIeefI--~G~E~~Vd~i~dg~~v~i~~i~e~~e~----------~g---------v~s 782 (1068)
T PRK12815 724 VYDEPALEAYLAENASQLYPILIDQFI--DGKEYEVDAISDGEDVTIPGIIEHIEQ----------AG---------VHS 782 (1068)
T ss_pred ECCHHHHHHHHHHhhcCCCCEEEEEee--cCceEEEEEEEcCCceEEeeEEEEeec----------cC---------CcC
Confidence 9999988752 5689999999 466776666644 33221 110000 00 011
Q ss_pred CCccccccccCCCC--chHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 232 DADEEVDLEKTEMP--REGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 232 ~~~~~~~~~~~~~~--~~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
+... .-..+..++ ..+.+++++.++.++||+. +++||+++++ + .+||||||.-+|
T Consensus 783 Gds~-~v~pp~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~--~-~~yviEiNpR~s 840 (1068)
T PRK12815 783 GDSI-AVLPPQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLAN--D-EIYVLEVNPRAS 840 (1068)
T ss_pred CCee-EEECCCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEEC--C-cEEEEEEeCCCC
Confidence 1000 000111222 2567899999999999987 6779999974 2 379999999887
No 53
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.54 E-value=3.7e-13 Score=147.53 Aligned_cols=228 Identities=16% Similarity=0.257 Sum_probs=152.3
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCC------------------------CcCCCccEEEEccCChhHH---HHHH--HHHHh
Q 047754 27 PSLITKATEQGIGLIRIDPDKPL------------------------TEQGPFDCIMHKLYGPDWT---QQLQ--QFSSR 77 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l------------------------~~q~~~DvilhK~~~~~~~---~~l~--~~~~~ 77 (330)
...++++++.|++++.+|.+-.. ..+..+|+|+.-+.++... ..+. ..+++
T Consensus 31 ~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~ 110 (1066)
T PRK05294 31 TQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEK 110 (1066)
T ss_pred HHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHH
Confidence 45788899999999999986311 0123578888766544221 1222 12333
Q ss_pred CCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCC
Q 047754 78 NPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDK 156 (330)
Q Consensus 78 ~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~ 156 (330)
+ |+.++ -+++++..+.||..+.++|.+ .|+|+|++..+.+.++... .. ..++||+|+||..+ . +
T Consensus 111 ~-Gv~~~g~~~~~i~~~~DK~~~k~~l~~-------~Gipvp~~~~v~s~~e~~~--~~--~~ig~PvVVKP~~g--~-g 175 (1066)
T PRK05294 111 Y-GVELIGAKLEAIDKAEDRELFKEAMKK-------IGLPVPRSGIAHSMEEALE--VA--EEIGYPVIIRPSFT--L-G 175 (1066)
T ss_pred C-CCEEECCCHHHHHHhcCHHHHHHHHHH-------CCcCCCCeeeeCCHHHHHH--HH--HHcCCCeEEEcCCC--C-C
Confidence 3 67766 579999999999999999986 7999999999988765532 22 67899999999864 3 5
Q ss_pred CcceEEEeChhhhhcC---------CCCeEEEecccCCCeEEEEEEECC---eEEEEEeecCCCcchhhhhccCcccccC
Q 047754 157 SHQMYLIFDNEGLEVL---------EAPILLQEFVNHGGIIFKVYVAGS---SVKCVKRKSLPDISEEKMKSLKGFLPFS 224 (330)
Q Consensus 157 sh~m~iv~~~~~L~~l---------~~p~vvQefI~h~g~~~Kv~ViG~---~v~~~~R~S~~~~~~~~~~~~~g~~~f~ 224 (330)
|+|+.++.++++|... ..++++||||+ +.+.+-+-|+.| ++..+. +..++.. .
T Consensus 176 g~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~-G~~Eisv~v~rd~~g~~~~~~--~~e~~dp---------~--- 240 (1066)
T PRK05294 176 GTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLL-GWKEYEYEVMRDKNDNCIIVC--SIENIDP---------M--- 240 (1066)
T ss_pred CCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEccc-CceEEEEEEEEcCCCCEEEEe--eeeeccc---------c---
Confidence 6899999999998652 24799999995 336787777754 232221 1111100 0
Q ss_pred CcccCCCCCccccccccC-CCC--chHHHHHHHHHHHHHhCCc--EEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 225 QISSNSVDADEEVDLEKT-EMP--REGFVVELSRALREALGLN--LFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 225 ~~s~~~~~~~~~~~~~~~-~~~--~~~~~~~lA~~~~~~LGl~--l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
..+.+.. ....+. .++ ..+.++++|.++.++||+. .+.||+.++..+| .+||+|||.=|+
T Consensus 241 ---gih~g~~--~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g-~~~viEiNPR~~ 305 (1066)
T PRK05294 241 ---GVHTGDS--ITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDG-RYIVIEMNPRVS 305 (1066)
T ss_pred ---ceecCCe--EEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCC-cEEEEEeecCCC
Confidence 0111100 001111 122 2457889999999999998 6779999985455 489999995544
No 54
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.54 E-value=6.1e-13 Score=145.54 Aligned_cols=231 Identities=15% Similarity=0.226 Sum_probs=154.2
Q ss_pred CcchHHHHHHHHCCCeEEEeCCCCCCC------------------------cCCCccEEEEccCChhHH--H-HH--HHH
Q 047754 24 VIQPSLITKATEQGIGLIRIDPDKPLT------------------------EQGPFDCIMHKLYGPDWT--Q-QL--QQF 74 (330)
Q Consensus 24 ~~~~~l~~~~~~~Gi~~~~id~~~~l~------------------------~q~~~DvilhK~~~~~~~--~-~l--~~~ 74 (330)
+.-...++++++.|++++.+|.+-... .+..+|+|+.-+.++... . .+ ...
T Consensus 27 ~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~ 106 (1050)
T TIGR01369 27 YSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGV 106 (1050)
T ss_pred chHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhH
Confidence 334467899999999999999984210 123578888755443211 1 11 223
Q ss_pred HHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCC
Q 047754 75 SSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANG 153 (330)
Q Consensus 75 ~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~G 153 (330)
+++ -|+.++ .+++++..+.||..+.+.|.+ .|+|+|++..+.+.++... .. ..++||+|+||..+.
T Consensus 107 le~-~Gv~~~G~~~~ai~~~~DK~~~k~~l~~-------~Gipvp~~~~v~s~~e~~~--~~--~~igyPvIVKP~~g~- 173 (1050)
T TIGR01369 107 LEK-YGVEVLGTPVEAIKKAEDRELFREAMKE-------IGEPVPESEIAHSVEEALA--AA--KEIGYPVIVRPAFTL- 173 (1050)
T ss_pred HHH-CCCEEECCCHHHHHHhCCHHHHHHHHHH-------CCCCCCCeeecCCHHHHHH--HH--HHhCCCeEEECCCCC-
Confidence 333 377766 789999999999999999986 7999999999988665432 22 578999999998743
Q ss_pred CCCCcceEEEeChhhhhcC-----C----CCeEEEecccCCCeEEEEEEECC---eEEEEEeecCCCcchhhhhccCccc
Q 047754 154 SDKSHQMYLIFDNEGLEVL-----E----APILLQEFVNHGGIIFKVYVAGS---SVKCVKRKSLPDISEEKMKSLKGFL 221 (330)
Q Consensus 154 s~~sh~m~iv~~~~~L~~l-----~----~p~vvQefI~h~g~~~Kv~ViG~---~v~~~~R~S~~~~~~~~~~~~~g~~ 221 (330)
+|.|+.++.|+++|... . .++++||||+ +.+.+-+-|++| .+..+ .+..++.+.
T Consensus 174 --gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~-G~~Eiev~v~rd~~g~~~~~--~~~e~~~p~--------- 239 (1050)
T TIGR01369 174 --GGTGGGIAYNREELKEIAERALSASPINQVLVEKSLA-GWKEIEYEVMRDSNDNCITV--CNMENFDPM--------- 239 (1050)
T ss_pred --CCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEccc-CceEEEEEEEEeCCCCEEEE--eeceeccCc---------
Confidence 56899999999998653 1 5899999996 336787777754 22221 111121100
Q ss_pred ccCCcccCCCCCccccccccCC-CCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 222 PFSQISSNSVDADEEVDLEKTE-MPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 222 ~f~~~s~~~~~~~~~~~~~~~~-~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
..+.+.. ....+.. ++. .+.++++|.++.++||+. .+.||++++..+| .+||+|||.-++
T Consensus 240 ------gvh~g~~--i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g-~~~viEiNPR~~ 303 (1050)
T TIGR01369 240 ------GVHTGDS--IVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSG-RYYVIEVNPRVS 303 (1050)
T ss_pred ------ceecCce--EEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCC-cEEEEEeecCcC
Confidence 0011100 0011111 221 456889999999999998 4569999985445 489999996665
No 55
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.54 E-value=8.6e-13 Score=144.29 Aligned_cols=223 Identities=14% Similarity=0.181 Sum_probs=146.5
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCCc-----------------------------------CCCccEEEEcc--CChhHHH
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLTE-----------------------------------QGPFDCIMHKL--YGPDWTQ 69 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~~-----------------------------------q~~~DvilhK~--~~~~~~~ 69 (330)
-+++++|+++|++.+.++.+.+... ...+|+|++=. .++. .
T Consensus 12 ~ri~ra~~elGi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~PGyGflsE~--~ 89 (1143)
T TIGR01235 12 IRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHPGYGFLSEN--S 89 (1143)
T ss_pred HHHHHHHHHcCCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEECCCccccC--H
Confidence 3578999999999999987643210 01235554321 1111 1
Q ss_pred HHHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE--EecCchhhhhhHHHHHhcCCCcEEE
Q 047754 70 QLQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQA--VVSETELVTRDMAIEELKLRFPLIA 146 (330)
Q Consensus 70 ~l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~l~~~~l~fP~Vv 146 (330)
.+.+..++ .|+.++ .++++++.+.||+.+.+++.+ .|||+|++. .+.+.++... . ...++||+|+
T Consensus 90 ~~a~~le~-~Gi~fiGps~e~i~~~~DK~~ar~la~~-------~GVPvpp~t~~~v~~~eea~~---~-ae~iGyPvIV 157 (1143)
T TIGR01235 90 EFADACNK-AGIIFIGPKAEVMDQLGDKVAARNLAIK-------AGVPVVPGTDGPPETMEEVLD---F-AAAIGYPVII 157 (1143)
T ss_pred HHHHHHHH-cCCcccCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCCcccCcCCHHHHHH---H-HHHcCCCEEE
Confidence 22233333 367766 568999999999999999986 799999865 3444444322 2 2578999999
Q ss_pred eeCCCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCe---EE-EEEee-cCCC
Q 047754 147 KPLEANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSS---VK-CVKRK-SLPD 208 (330)
Q Consensus 147 Kp~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~---v~-~~~R~-S~~~ 208 (330)
||..++ +|+||.++.++++|... +.++++|+||+ +++.+.|-|+||. ++ ...|- |...
T Consensus 158 KP~~GG---GGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~-g~reIeVqVlgD~~G~vv~l~eRdcsvqr 233 (1143)
T TIGR01235 158 KASWGG---GGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIE-RPRHIEVQLLGDKHGNVVHLFERDCSVQR 233 (1143)
T ss_pred EECCCC---CCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCC-CCeEEEEEEEEeCCCCEEEEEeccccccc
Confidence 998854 46899999999888642 35799999996 4688999999775 22 23332 1110
Q ss_pred cchhhhhccCcccccCCcccCCCCCccccccccCCCC--chHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEe
Q 047754 209 ISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMP--REGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDI 285 (330)
Q Consensus 209 ~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEV 285 (330)
.++ +.. +..|.+ .++ ..+.+.++|.++.++||+.-+| ||++++. +| .+|+|||
T Consensus 234 --------------r~q--k~i-----e~aPa~-~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~-dg-~~yfIEV 289 (1143)
T TIGR01235 234 --------------RHQ--KVV-----EVAPAP-YLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDN-DG-KFYFIEV 289 (1143)
T ss_pred --------------cCc--eEE-----EEeCCC-CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeC-CC-cEEEEEe
Confidence 000 000 000111 111 1467889999999999988666 9999985 34 3799999
Q ss_pred eCCCCC
Q 047754 286 NYLPGY 291 (330)
Q Consensus 286 N~fPg~ 291 (330)
|.=++.
T Consensus 290 NPRiqv 295 (1143)
T TIGR01235 290 NPRIQV 295 (1143)
T ss_pred ecCCCc
Confidence 988864
No 56
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.53 E-value=4.1e-14 Score=122.84 Aligned_cols=150 Identities=23% Similarity=0.345 Sum_probs=79.1
Q ss_pred hcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC
Q 047754 93 LHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL 172 (330)
Q Consensus 93 ~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l 172 (330)
|.||+.+++.|.+ .+|++|.+...... ....+|+|+||..|+ +|.++.++.+.+++...
T Consensus 1 ~~dK~~~~~~L~~-------~gi~~P~~~~~~~~-----------~~~~~~~viKp~~G~---Gg~~i~~~~~~~~~~~~ 59 (161)
T PF02655_consen 1 CSDKLKTYKFLKE-------LGIPVPTTLRDSEP-----------EPIDGPWVIKPRDGA---GGEGIRIVDSEDELEEF 59 (161)
T ss_dssp -TSHHHHHHHHTT-------T-S--------EES-----------S--SSSEEEEESS----------B--SS--TTE--
T ss_pred CCCHHHHHHHHHc-------cCCCCCCccccccc-----------cccCCcEEEEeCCCC---CCCCeEEECCchhhccc
Confidence 6899999999986 69999944422221 224789999999965 45899999999888754
Q ss_pred -CCCeEEEecccCCCeEEEEEEECCe----EEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCch
Q 047754 173 -EAPILLQEFVNHGGIIFKVYVAGSS----VKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPRE 247 (330)
Q Consensus 173 -~~p~vvQefI~h~g~~~Kv~ViG~~----v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~ 247 (330)
....++|||| .|..+.+.++.+. +..+-|..+..- ...|.|. |...+...+..
T Consensus 60 ~~~~~i~Qe~i--~G~~~Sv~~l~~~~~~~~l~~~rq~i~~~--------~~~~~~~------------G~~~~~~~~~~ 117 (161)
T PF02655_consen 60 LNKLRIVQEFI--EGEPYSVSFLASGGGARLLGVNRQLIGND--------DGRFRYC------------GGIVPADTPLK 117 (161)
T ss_dssp -----EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET------------TEEE------------EEEES----HH
T ss_pred cccceEEeeee--CCEEeEEEEEEeCCceEEEEechHhhccc--------cceeeec------------ccccccCCchH
Confidence 3344999999 5888888877653 334445433210 0012111 12222333347
Q ss_pred HHHHHHHHHHHHHh-CCc-EEEEEEEEeCCCCCeeEEEEeeCC
Q 047754 248 GFVVELSRALREAL-GLN-LFNFDLIRDAGERDGYLVIDINYL 288 (330)
Q Consensus 248 ~~~~~lA~~~~~~L-Gl~-l~GvDvi~~~~~g~~~~ViEVN~f 288 (330)
+++.++|.+++++| ||. ++|||+|+++ + .+||||||.=
T Consensus 118 ~~~~~~~~~i~~~l~gl~G~~giD~I~~~--~-~~~viEINPR 157 (161)
T PF02655_consen 118 EEIIELARRIAEALPGLRGYVGIDFILDD--G-GPYVIEINPR 157 (161)
T ss_dssp HHHHHHHHHHHTTSTT--EEEEEEEEESS----SEEEEEEESS
T ss_pred HHHHHHHHHHHHHcCCCeeeEeEEEEEeC--C-cEEEEEEcCC
Confidence 88999999999999 988 7799999985 2 3799999953
No 57
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.53 E-value=1.2e-12 Score=130.03 Aligned_cols=206 Identities=12% Similarity=0.135 Sum_probs=127.3
Q ss_pred HHHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEee
Q 047754 70 QLQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKP 148 (330)
Q Consensus 70 ~l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp 148 (330)
.+.+.+++ .|++++ .++++++.+.||..+.++|++ .+||+|++..+.+.++... .+ ..++||+|+||
T Consensus 77 ~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~--~~--~~~~~P~VvKP 144 (420)
T PRK00885 77 GIVDAFRA-AGLPIFGPTKAAAQLEGSKAFAKDFMAR-------YGIPTAAYETFTDAEEALA--YL--DEKGAPIVVKA 144 (420)
T ss_pred HHHHHHHH-CCCcEECcCHHHHHHHcCHHHHHHHHHH-------cCCCCCCeEEeCCHHHHHH--HH--HHcCCCEEEEe
Confidence 33444444 378776 577899999999999999986 7999999999988765542 23 56899999999
Q ss_pred CCCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCe--EEEEE--eecCCCcch
Q 047754 149 LEANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSS--VKCVK--RKSLPDISE 211 (330)
Q Consensus 149 ~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~--v~~~~--R~S~~~~~~ 211 (330)
..+. +|.|+.++.+++++.+. ..++++||||+ |..|-|.++.+. +.... |.-.. +.
T Consensus 145 ~~~~---gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~--G~E~sv~~~~~g~~~~~~~~~~~~~~-~~- 217 (420)
T PRK00885 145 DGLA---AGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD--GEEASFFAFVDGENVLPLPTAQDHKR-AG- 217 (420)
T ss_pred CCCC---CCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC--CcEEEEEEEECCCceEeceeeEeeee-cc-
Confidence 8643 56899999999887541 24799999995 789988877543 32211 10000 00
Q ss_pred hhhhccCcccccCCcccCCCCCccccccccCC-CCc--hHHHH-HHHHHHHHHh---CCc---EEEEEEEEeCCCCCeeE
Q 047754 212 EKMKSLKGFLPFSQISSNSVDADEEVDLEKTE-MPR--EGFVV-ELSRALREAL---GLN---LFNFDLIRDAGERDGYL 281 (330)
Q Consensus 212 ~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~-~~~--~~~~~-~lA~~~~~~L---Gl~---l~GvDvi~~~~~g~~~~ 281 (330)
++.+ ....+.. +...+.. +++ .+.+. +++.++.++| |+. .+.+|+++++ +| ++
T Consensus 218 ------~~~~------~~~~g~~--~~~~p~~~l~~~~~~~~~~~i~~~~~~al~~~gl~~~G~~~ve~~~t~-~g--~~ 280 (420)
T PRK00885 218 ------DGDT------GPNTGGM--GAYSPAPVVTEEVVERVMEEIIKPTVKGMAAEGIPYTGVLYAGLMITK-DG--PK 280 (420)
T ss_pred ------cCCC------CCCCCCC--ceeccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEeEEEEEEEEEC-CC--cE
Confidence 0000 0001100 1111111 221 12233 3666666654 454 4569999985 34 58
Q ss_pred EEEeeCCCCCCCC----CCcHHHHHHHHHHHHHh
Q 047754 282 VIDINYLPGYAKL----PGYETLLMDFFLNVAKS 311 (330)
Q Consensus 282 ViEVN~fPg~~g~----~~~~~~l~~~i~~~~~~ 311 (330)
|+|+|.=||-.+. +.....+.+++...+..
T Consensus 281 viEin~R~g~~~~~~~~~~~~~d~~~~~~~~~~g 314 (420)
T PRK00885 281 VIEFNARFGDPETQVVLPRLKSDLVELLLAAADG 314 (420)
T ss_pred EEEEecccCCccHHhhhhhccCCHHHHHHHHHcC
Confidence 9999998874333 22344566666655543
No 58
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.51 E-value=1.8e-12 Score=142.08 Aligned_cols=235 Identities=17% Similarity=0.227 Sum_probs=155.8
Q ss_pred CcchHHHHHHHHCCCeEEEeCCCCCC-------C-----------------cCCCccEEEEccCChhHH---HHHH-H-H
Q 047754 24 VIQPSLITKATEQGIGLIRIDPDKPL-------T-----------------EQGPFDCIMHKLYGPDWT---QQLQ-Q-F 74 (330)
Q Consensus 24 ~~~~~l~~~~~~~Gi~~~~id~~~~l-------~-----------------~q~~~DvilhK~~~~~~~---~~l~-~-~ 74 (330)
+.-.+.++++++.|++++.+|.+-.. . .+..+|+|+.=+.++... ..+. + .
T Consensus 28 ~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~ 107 (1068)
T PRK12815 28 YSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGI 107 (1068)
T ss_pred hHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCH
Confidence 33456889999999999999987321 0 123578888755443221 2222 1 3
Q ss_pred HHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCC
Q 047754 75 SSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANG 153 (330)
Q Consensus 75 ~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~G 153 (330)
++++ |+.++ -+++++..+.||..+.++|.+ .|||+|++..+.+.++... .. ..++||+|+||..+.
T Consensus 108 Le~~-gv~l~g~~~~~i~~~~DK~~~k~~l~~-------~GIpvp~~~~v~s~ee~~~--~~--~~igyPvVVKP~~g~- 174 (1068)
T PRK12815 108 LEQY-GVELLGTNIEAIQKGEDRERFRALMKE-------LGEPVPESEIVTSVEEALA--FA--EKIGFPIIVRPAYTL- 174 (1068)
T ss_pred HHHC-CCEEECCCHHHHHHhcCHHHHHHHHHH-------cCcCCCCceeeCCHHHHHH--HH--HHcCCCEEEEECcCC-
Confidence 3443 77775 588999999999999999986 7999999999988765532 22 568999999998743
Q ss_pred CCCCcceEEEeChhhhhcC---------CCCeEEEecccCCCeEEEEEEECCe---EEEEEeecCCCcchhhhhccCccc
Q 047754 154 SDKSHQMYLIFDNEGLEVL---------EAPILLQEFVNHGGIIFKVYVAGSS---VKCVKRKSLPDISEEKMKSLKGFL 221 (330)
Q Consensus 154 s~~sh~m~iv~~~~~L~~l---------~~p~vvQefI~h~g~~~Kv~ViG~~---v~~~~R~S~~~~~~~~~~~~~g~~ 221 (330)
++.|+.++.|+++|.+. ..++++||||+ +...+-+-|++|. +..+. +..++....
T Consensus 175 --gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~-G~~E~sv~v~rD~~g~~~~~~--~~e~~~p~g-------- 241 (1068)
T PRK12815 175 --GGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIA-GWKEIEYEVMRDRNGNCITVC--NMENIDPVG-------- 241 (1068)
T ss_pred --CCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccC-CCeEEEEEEEEcCCCCEEEEE--eceeccccc--------
Confidence 46889999999998652 24799999995 3368888888652 32211 111211100
Q ss_pred ccCCcccCCCCCccccccccC-CCC--chHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCCCC
Q 047754 222 PFSQISSNSVDADEEVDLEKT-EMP--REGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKLPG 296 (330)
Q Consensus 222 ~f~~~s~~~~~~~~~~~~~~~-~~~--~~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~ 296 (330)
...|.. ....+. .++ ..+.++++|.++.++||+. .++||+.++..+| .++|+||| |.+.+...
T Consensus 242 -------i~tG~s--~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g-~~~ViEIN--PR~~~s~~ 308 (1068)
T PRK12815 242 -------IHTGDS--IVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSK-QYYLIEVN--PRVSRSSA 308 (1068)
T ss_pred -------ccCCce--EEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCC-cEEEEEEe--cCcccchh
Confidence 011100 000111 111 1356889999999999996 5569999986445 48999999 55555443
No 59
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.51 E-value=4.4e-12 Score=126.36 Aligned_cols=234 Identities=11% Similarity=0.133 Sum_probs=141.1
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCCcCCCccEEEEccCChhHHHHHHHHHHhCCCceecChH-HHHHHhcCHHHHHHHHHh
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDPP-ESIERLHNRDSMLEVVSR 105 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~~q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp~-~ai~~~~dR~~~~~~L~~ 105 (330)
+.+++.|++.+++++.+.++. .. .+-+.+.+++ -|++++-|. .+.+.+.||..+-++|.+
T Consensus 58 ~~l~~~a~~~~iD~Vv~g~E~-----------------~l-~~glad~~~~-~Gip~~Gp~~~aa~le~dK~~~K~~l~~ 118 (426)
T PRK13789 58 SSVQSFLKSNPFDLIVVGPED-----------------PL-VAGFADWAAE-LGIPCFGPDSYCAQVEGSKHFAKSLMKE 118 (426)
T ss_pred HHHHHHHHHcCCCEEEECCch-----------------HH-HHHHHHHHHH-cCCCcCCCHHHHHHHHcCHHHHHHHHHH
Confidence 456666666666666554431 11 2333333333 378887554 577889999999999986
Q ss_pred hhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC-------------
Q 047754 106 LKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL------------- 172 (330)
Q Consensus 106 ~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------------- 172 (330)
++||+|++..+.+.++... .+ ..++||+|+||..+ + +|.|+.++.+.+++...
T Consensus 119 -------~gIpt~~~~~~~~~~ea~~--~~--~~~~~PvVVKp~~~--~-~gkGV~vv~~~eel~~a~~~~~~~~~~g~~ 184 (426)
T PRK13789 119 -------AKIPTASYKTFTEYSSSLS--YL--ESEMLPIVIKADGL--A-AGKGVTVATEKKMAKRALKEIFKDKKFGQS 184 (426)
T ss_pred -------cCCCCCCeEeeCCHHHHHH--HH--HhcCCCEEEEeCCC--C-CCCcEEEECCHHHHHHHHHHHHhhccccCC
Confidence 8999999998887665432 23 46899999999753 2 57999999999887541
Q ss_pred CCCeEEEecccCCCeEEEEEEECCe--EEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCC-CCc--h
Q 047754 173 EAPILLQEFVNHGGIIFKVYVAGSS--VKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTE-MPR--E 247 (330)
Q Consensus 173 ~~p~vvQefI~h~g~~~Kv~ViG~~--v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~-~~~--~ 247 (330)
...+++|||| .|+.+-|.++.+. +++ +|-.. +.+ ..++.+. ....+.- +...+.. ++. .
T Consensus 185 ~~~vlIEEfl--~G~E~Sv~~~~dg~~~~~-----lp~~~--d~k---~~~d~d~--g~~tggm--g~~~P~p~~~~~~~ 248 (426)
T PRK13789 185 GNQVVIEEFM--EGQEASIFAISDGDSYFL-----LPAAQ--DHK---RAFDGDQ--GPNTGGM--GAYCPAPVITEAIL 248 (426)
T ss_pred CCeEEEEECc--CCeEEEEEEEECCCEEEE-----ccceE--ecc---cccCCCC--CCCCCCc--eEEeeCCCCCHHHH
Confidence 1269999999 5799999888653 221 12110 000 1111111 1111111 1112221 111 2
Q ss_pred HHH-HHHHHHHHHH---hCCc---EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC----CCcHHHHHHHHHHHHHh
Q 047754 248 GFV-VELSRALREA---LGLN---LFNFDLIRDAGERDGYLVIDINYLPGYAKL----PGYETLLMDFFLNVAKS 311 (330)
Q Consensus 248 ~~~-~~lA~~~~~~---LGl~---l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~----~~~~~~l~~~i~~~~~~ 311 (330)
+++ ++++..+.++ +|+. ++.+|++++. +|+ ++|+|+|.-||-... |.....|.+.+...+..
T Consensus 249 ~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~-~g~-~~vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~~~~~g 321 (426)
T PRK13789 249 QKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISP-EGE-PKVVEFNCRFGDPETQCVLAMLDGDLLELLYAASTG 321 (426)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcC-CCC-EEEEEEecCCCCcHhhhhhccCCCCHHHHHHHHHcC
Confidence 223 2355555544 4644 4568999974 454 689999999995222 33446777777666644
No 60
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.50 E-value=1.9e-12 Score=129.62 Aligned_cols=191 Identities=12% Similarity=0.146 Sum_probs=122.4
Q ss_pred HHHHHHHHhCCCcee-cChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEe
Q 047754 69 QQLQQFSSRNPDVRI-IDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAK 147 (330)
Q Consensus 69 ~~l~~~~~~~p~v~v-iDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvK 147 (330)
..+|..++.. |+++ .-+..++..|+||..+.+++.+ .|||+|++..+...+.........+..++||+|+|
T Consensus 116 G~iQ~lLE~l-GIpy~gP~a~asai~mDK~~tK~l~~~-------aGIPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVK 187 (493)
T PRK06524 116 EETEALARQA-GLEVMHPPAELRHRLDSKIVTTRLANE-------AGVPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQ 187 (493)
T ss_pred HHHHHHHHHC-CCeEECcCHHHHHHhCCHHHHHHHHHH-------cCCCCCCcccccCCCHHHHHHHHHhccCCCcEEEE
Confidence 3456666553 6777 7788999999999999999975 79999999875322111111122122499999999
Q ss_pred eCCCCCCCCCcceEEEeChhhhhcC------CCCeEEEecccCCCeEEEE--EEECCe-EEEE-EeecCCCcchhhhhc-
Q 047754 148 PLEANGSDKSHQMYLIFDNEGLEVL------EAPILLQEFVNHGGIIFKV--YVAGSS-VKCV-KRKSLPDISEEKMKS- 216 (330)
Q Consensus 148 p~~a~Gs~~sh~m~iv~~~~~L~~l------~~p~vvQefI~h~g~~~Kv--~ViG~~-v~~~-~R~S~~~~~~~~~~~- 216 (330)
|..+ | .|+|+.+|.++++|..+ ...+++|+||+ |+.+-| ++.++. +... .+..++-. +...
T Consensus 188 P~~G-G--SS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~~e~vg~~---Ei~~y 259 (493)
T PRK06524 188 TPYG-D--SGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAMTSLVGYP---ELTPY 259 (493)
T ss_pred ECCC-C--CCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC--cEEEEEEEEEeCCCCEEeccccccccce---EEEEc
Confidence 9963 3 47999999999998763 24689999995 777765 554442 3221 11111110 0000
Q ss_pred cCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHh---CCc-EEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 217 LKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREAL---GLN-LFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 217 ~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~L---Gl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
..|.+. ....++.+++ .++++++|.++.++| |+. +++||++++..+| .+|++|||.=||
T Consensus 260 r~G~~~--------------~~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddg-evYfnEINPR~~ 324 (493)
T PRK06524 260 RGGWCG--------------NDIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDAD-ELYLGEVNPRLS 324 (493)
T ss_pred cCCeEE--------------EEEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCC-eEEEEEEeCCcc
Confidence 000000 0012222322 467899999999999 444 6679999985345 489999997665
No 61
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.50 E-value=7e-12 Score=125.25 Aligned_cols=225 Identities=9% Similarity=0.141 Sum_probs=139.2
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCCc--------------------------------CCCccEEEEccC--ChhHHHHHH
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLTE--------------------------------QGPFDCIMHKLY--GPDWTQQLQ 72 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~~--------------------------------q~~~DvilhK~~--~~~~~~~l~ 72 (330)
..++++|+++|+.++.+|.+..... ....|+|+.=.. .+. ..+.
T Consensus 15 ~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~I~p~~~~~~e~--~~~~ 92 (450)
T PRK06111 15 VRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHPGYGLLSEN--ASFA 92 (450)
T ss_pred HHHHHHHHHcCCeEEEEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEeCCCccccC--HHHH
Confidence 4577889999999998875431100 012355543211 111 1122
Q ss_pred HHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcE--EEecCchhhhhhHHHHHhcCCCcEEEeeC
Q 047754 73 QFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQ--AVVSETELVTRDMAIEELKLRFPLIAKPL 149 (330)
Q Consensus 73 ~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~--~~~~~~~~~~~~~~l~~~~l~fP~VvKp~ 149 (330)
..++. -|++++ .++++++.++||..+.++|.+ .+||+|++ ..+.+.++... .. ..++||+|+||.
T Consensus 93 ~~~~~-~g~~~~g~~~~~~~~~~dK~~~k~~l~~-------~gIp~p~~~~~~~~~~~e~~~--~~--~~~~~P~VvKP~ 160 (450)
T PRK06111 93 ERCKE-EGIVFIGPSADIIAKMGSKIEARRAMQA-------AGVPVVPGITTNLEDAEEAIA--IA--RQIGYPVMLKAS 160 (450)
T ss_pred HHHHH-CCCeEECCCHHHHHHhCCHHHHHHHHHH-------CCCCCCCCcCcCcCCHHHHHH--HH--HHhCCCEEEEeC
Confidence 33333 367655 668999999999999999986 79999986 33444333321 22 568999999998
Q ss_pred CCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECC---eEEEEEeecCCCcchhh
Q 047754 150 EANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGS---SVKCVKRKSLPDISEEK 213 (330)
Q Consensus 150 ~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~---~v~~~~R~S~~~~~~~~ 213 (330)
.++ +|+|+.++.+.++|.+. +.++++||||+ +++.+.+.++++ ++.....+..+ +..
T Consensus 161 ~g~---gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~g~~~~~~~~~~~-~~~-- 233 (450)
T PRK06111 161 AGG---GGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIE-DPRHIEIQLLADTHGNTVYLWERECS-VQR-- 233 (450)
T ss_pred CCC---CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccC-CCcEEEEEEEEcCCCCEEEEEeeccc-ccc--
Confidence 854 56899999999888641 34799999996 345666655543 23322211000 000
Q ss_pred hhccCcccccCCcccCCCCCccccccccCCCC--chHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 214 MKSLKGFLPFSQISSNSVDADEEVDLEKTEMP--REGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 214 ~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
.+. +.-. ..+.+. ++ ..+.++++|.++.++||+. ++.+|++++. +|+ +||+|||.=|+
T Consensus 234 ---------~~~--~~~~-----~~p~~~-~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~g~-~~viEiN~R~~ 294 (450)
T PRK06111 234 ---------RHQ--KVIE-----EAPSPF-LDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDE-QKN-FYFLEMNTRLQ 294 (450)
T ss_pred ---------ccc--ceEE-----ecCCCC-CCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CCC-EEEEEEECCcC
Confidence 000 0000 001110 11 2467889999999999996 5569999985 343 79999998876
Q ss_pred C
Q 047754 291 Y 291 (330)
Q Consensus 291 ~ 291 (330)
-
T Consensus 295 ~ 295 (450)
T PRK06111 295 V 295 (450)
T ss_pred C
Confidence 3
No 62
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.48 E-value=5.5e-12 Score=125.10 Aligned_cols=206 Identities=12% Similarity=0.128 Sum_probs=127.0
Q ss_pred HHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCc-EEEee
Q 047754 71 LQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFP-LIAKP 148 (330)
Q Consensus 71 l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP-~VvKp 148 (330)
+.+.++++ |++++ .++++++.++||+.+.++|.+ .+||+|++..+.+.++... .+ ..++|| +|+||
T Consensus 80 ~~~~l~~~-gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gIp~p~~~~~~~~~~~~~--~~--~~~g~P~~VvKp 147 (423)
T TIGR00877 80 LVDALEEA-GIPVFGPTKEAAQLEGSKAFAKDFMKR-------YGIPTAEYEVFTDPEEALS--YI--QEKGAPAIVVKA 147 (423)
T ss_pred HHHHHHHC-CCeEECCCHHHHHHHCCHHHHHHHHHH-------CCCCCCCeEEECCHHHHHH--HH--HhcCCCeEEEEE
Confidence 34444443 67765 678899999999999999986 7999999999988765432 23 568999 99999
Q ss_pred CCCCCCCCCcceEEEeChhhhhcC------------CCCeEEEecccCCCeEEEEEEE--CCeEEEEE-eecCCCcchhh
Q 047754 149 LEANGSDKSHQMYLIFDNEGLEVL------------EAPILLQEFVNHGGIIFKVYVA--GSSVKCVK-RKSLPDISEEK 213 (330)
Q Consensus 149 ~~a~Gs~~sh~m~iv~~~~~L~~l------------~~p~vvQefI~h~g~~~Kv~Vi--G~~v~~~~-R~S~~~~~~~~ 213 (330)
..+. +|.|+.++.+.+++... ..++++||||+ |..|-|.++ |+.+.... .+....
T Consensus 148 ~~~~---gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dg~~~~~~~~~~~~~~----- 217 (423)
T TIGR00877 148 DGLA---AGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLD--GEEVSLLAFVDGKTVIPMPPAQDHKR----- 217 (423)
T ss_pred CCCC---CCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECcc--CceEEEEEEEcCCeEEeceeeeeeee-----
Confidence 7643 56899999999887541 24799999995 688887776 44333211 000000
Q ss_pred hhccCcccccCCcccCCCCCccccccccC-CCCc---hHHHHHHHHHHHHHhC---C---cEEEEEEEEeCCCCCeeEEE
Q 047754 214 MKSLKGFLPFSQISSNSVDADEEVDLEKT-EMPR---EGFVVELSRALREALG---L---NLFNFDLIRDAGERDGYLVI 283 (330)
Q Consensus 214 ~~~~~g~~~f~~~s~~~~~~~~~~~~~~~-~~~~---~~~~~~lA~~~~~~LG---l---~l~GvDvi~~~~~g~~~~Vi 283 (330)
.+..+. ....+.. +...+. .++. .+..++++.++.++|+ + .++.+|++++. +| ++|+
T Consensus 218 ------~~~~~~--~~~~g~~--~~~~p~~~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~-~g--~~vi 284 (423)
T TIGR00877 218 ------ALEGDK--GPNTGGM--GAYSPAPVFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTK-EG--PKVL 284 (423)
T ss_pred ------cccCCC--CCCCCCC--ceecCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEEC-CC--cEEE
Confidence 000000 0000100 001111 1221 1223456666666663 2 46679999985 34 6899
Q ss_pred EeeCCCCCCCC----CCcHHHHHHHHHHHHHh
Q 047754 284 DINYLPGYAKL----PGYETLLMDFFLNVAKS 311 (330)
Q Consensus 284 EVN~fPg~~g~----~~~~~~l~~~i~~~~~~ 311 (330)
|||.=||-.+. +.+...|.+++......
T Consensus 285 Ein~R~g~~~~~~~~~~~~~dl~~~~~~~~~g 316 (423)
T TIGR00877 285 EFNCRFGDPETQAVLPLLKSDLLEVCLAAVEG 316 (423)
T ss_pred EEEccCCCccceeEecccCCCHHHHHHHHHcC
Confidence 99999984433 22334555655555533
No 63
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.44 E-value=1.4e-11 Score=135.38 Aligned_cols=224 Identities=16% Similarity=0.214 Sum_probs=143.5
Q ss_pred chHHHHHHHHCCCeEEEeCCCCCCC-------c--------------------------CCCccEEEEccC--ChhHHHH
Q 047754 26 QPSLITKATEQGIGLIRIDPDKPLT-------E--------------------------QGPFDCIMHKLY--GPDWTQQ 70 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~l~-------~--------------------------q~~~DvilhK~~--~~~~~~~ 70 (330)
.-+++++|+++|++++.++.+.+.. + .-.+|+|+.-.. .+. ..
T Consensus 17 avri~raa~elGi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI~PgyGflsE~--~~ 94 (1146)
T PRK12999 17 AIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAIHPGYGFLSEN--PE 94 (1146)
T ss_pred HHHHHHHHHHcCCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEEEeCCCccccC--HH
Confidence 3568899999999999885542210 0 113455554311 111 12
Q ss_pred HHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE--EecCchhhhhhHHHHHhcCCCcEEEe
Q 047754 71 LQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQA--VVSETELVTRDMAIEELKLRFPLIAK 147 (330)
Q Consensus 71 l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~l~~~~l~fP~VvK 147 (330)
+.+..++ -|++++ .++++++.+.||..+.+++.+ .|||+|++. .+.+.++... .. ..++||+|+|
T Consensus 95 ~a~~~e~-~Gi~fiGps~eai~~~~DK~~~r~~l~~-------~GVPv~P~~~~~v~s~eea~~--~a--~~iGyPvVVK 162 (1146)
T PRK12999 95 FARACAE-AGITFIGPTAEVLRLLGDKVAARNAAIK-------AGVPVIPGSEGPIDDIEEALE--FA--EEIGYPIMLK 162 (1146)
T ss_pred HHHHHHH-cCCcccCCCHHHHHHhCCHHHHHHHHHH-------CCCCCCCCcccCCCCHHHHHH--HH--HHhCCCEEEE
Confidence 2233333 367655 579999999999999999986 799997755 3555544432 22 6789999999
Q ss_pred eCCCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCe---EEEE-Eee-cCCCc
Q 047754 148 PLEANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSS---VKCV-KRK-SLPDI 209 (330)
Q Consensus 148 p~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~---v~~~-~R~-S~~~~ 209 (330)
|..++ +|+||.++.++++|... +.++++|+||+ +++.+.|-++||. ++.. .|- |.
T Consensus 163 P~~Gg---GGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~-g~~~ieVqvl~D~~G~vv~l~erdcsv--- 235 (1146)
T PRK12999 163 ASAGG---GGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVE-NPRHIEVQILGDKHGNVVHLYERDCSV--- 235 (1146)
T ss_pred ECCCC---CCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCC-CCeEEEEEEEEECCCCEEEEEccccce---
Confidence 98864 46999999999888642 35799999997 4566777777642 2221 221 10
Q ss_pred chhhhhccCcccccCCcccCCCCCccccccccCCCC--chHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEee
Q 047754 210 SEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMP--REGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDIN 286 (330)
Q Consensus 210 ~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEVN 286 (330)
...++ +.-. ..|.. .++ ..+.+.++|.++.+++|+.-.| +|++++.+ | .+|+||||
T Consensus 236 ------------qrr~q-k~ie-----~aP~~-~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~d-g-~~yfIEIN 294 (1146)
T PRK12999 236 ------------QRRHQ-KVVE-----IAPAP-GLSEELRERICEAAVKLARAVGYVNAGTVEFLVDAD-G-NFYFIEVN 294 (1146)
T ss_pred ------------eecCc-cEEE-----EcCCC-CCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECC-C-CEEEEEEE
Confidence 00000 0000 00110 111 1467889999999999998666 99999853 4 37999999
Q ss_pred CCCCC
Q 047754 287 YLPGY 291 (330)
Q Consensus 287 ~fPg~ 291 (330)
.=++.
T Consensus 295 pRlqv 299 (1146)
T PRK12999 295 PRIQV 299 (1146)
T ss_pred CCCCC
Confidence 87763
No 64
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=99.41 E-value=5.8e-12 Score=128.46 Aligned_cols=266 Identities=16% Similarity=0.257 Sum_probs=171.0
Q ss_pred CCCCCceEEEEEeccCCcccCcchHHHH-HHHHCCCeEEEeCCC----CCCCcCCC-ccEEEEccCChhHHHHHHHHHHh
Q 047754 4 HEGQPYCKIGYVFAPNKEQTVIQPSLIT-KATEQGIGLIRIDPD----KPLTEQGP-FDCIMHKLYGPDWTQQLQQFSSR 77 (330)
Q Consensus 4 ~~~~~~~~vg~~~~~~k~~~~~~~~l~~-~~~~~Gi~~~~id~~----~~l~~q~~-~DvilhK~~~~~~~~~l~~~~~~ 77 (330)
+|.....+||.+.-.+|.++=--+...+ ...-.=++++..--+ .|.+ ..| -|++|-=-+..-=.....+|++-
T Consensus 35 ~p~~r~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVE-NWP~CdcLIsFhSsGFPLdKAiaY~kL 113 (1018)
T KOG1057|consen 35 SPPERQIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVE-NWPLCDCLISFHSKGFPLDKAVAYAKL 113 (1018)
T ss_pred CCCccceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccc-cCcccceEEEeccCCCChHHHHHHHHh
Confidence 3455567999999998866521112211 111112333322211 1222 223 35555332222224566788755
Q ss_pred CCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHH---------HHhcCCCcEEEee
Q 047754 78 NPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAI---------EELKLRFPLIAKP 148 (330)
Q Consensus 78 ~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l---------~~~~l~fP~VvKp 148 (330)
+ .-.|||.+.-...++||-..|++|+. .||++|+..++.+.-....+..+ .-.-+.=|+|=||
T Consensus 114 R-nPFviNdL~mQyll~DRR~Vy~iLe~-------~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKP 185 (1018)
T KOG1057|consen 114 R-NPFVINDLDMQYLLQDRREVYSILEA-------EGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKP 185 (1018)
T ss_pred c-CCeeeccccHHHHHHHHHHHHHHHHH-------cCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCC
Confidence 4 46899999999999999999999986 89999999988764221111111 1123456999999
Q ss_pred CCCCCCCCCcceEEEeCh-------hhhhcC---------------CCCeEEEecccCCCeEEEEEEECCeEEEEE-eec
Q 047754 149 LEANGSDKSHQMYLIFDN-------EGLEVL---------------EAPILLQEFVNHGGIIFKVYVAGSSVKCVK-RKS 205 (330)
Q Consensus 149 ~~a~Gs~~sh~m~iv~~~-------~~L~~l---------------~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~-R~S 205 (330)
+.| +-|.++|-+-- +=++.+ .-.++.+||++.+|.|.|||.||..+..+. |+|
T Consensus 186 Vs~----EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKS 261 (1018)
T KOG1057|consen 186 VSA----EDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKS 261 (1018)
T ss_pred CCc----ccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchhhhhhccC
Confidence 996 57999998764 112221 126999999999999999999999987665 777
Q ss_pred CCCcchhhhhccCcccccCCcccCCCCCccccc-c-ccCCCCchHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeeEEE
Q 047754 206 LPDISEEKMKSLKGFLPFSQISSNSVDADEEVD-L-EKTEMPREGFVVELSRALREALGLNLFNFDLIRDAGERDGYLVI 283 (330)
Q Consensus 206 ~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~-~-~~~~~~~~~~~~~lA~~~~~~LGl~l~GvDvi~~~~~g~~~~Vi 283 (330)
|-+. |... ..+. |+ . -+..+ .+.-+.+|.+++-+++-.+.|||+++.+ |. -||+
T Consensus 262 -PvvD-GkV~---------------Rns~--GKEvRYpv~L--s~~EK~iA~KVciAF~Q~VCGFDLLRa~--G~-SYVc 317 (1018)
T KOG1057|consen 262 -PVVD-GKVE---------------RNSD--GKEVRYPVIL--NSSEKQIARKVCIAFKQTVCGFDLLRAN--GK-SYVC 317 (1018)
T ss_pred -cccc-ceee---------------ecCC--Cceeeceeec--ChhhHHHHhHHHhhccccccchHHhhcC--Cc-eEEE
Confidence 4321 1111 1000 11 0 11122 3334789999999999999999999875 33 5899
Q ss_pred EeeCCCCCCCCCCcHHHHHHHHH
Q 047754 284 DINYLPGYAKLPGYETLLMDFFL 306 (330)
Q Consensus 284 EVN~fPg~~g~~~~~~~l~~~i~ 306 (330)
|||.|-=.+..-.+|..-+..+.
T Consensus 318 DVNGfSFVKns~kYYDd~AkIL~ 340 (1018)
T KOG1057|consen 318 DVNGFSFVKNSNKYYDDCAKILG 340 (1018)
T ss_pred eccceeeeecchhhhHHHHHHHh
Confidence 99999988888888876665555
No 65
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.41 E-value=2.9e-11 Score=116.17 Aligned_cols=185 Identities=24% Similarity=0.384 Sum_probs=135.8
Q ss_pred CccEEEEccCChhHHHHHHHHHHhCCCceec--ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhh
Q 047754 54 PFDCIMHKLYGPDWTQQLQQFSSRNPDVRII--DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTR 131 (330)
Q Consensus 54 ~~DvilhK~~~~~~~~~l~~~~~~~p~v~vi--Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~ 131 (330)
.+|+++.+-..+...++-.+|.+. |+.++ -+.+++..+.||+.+++.+++ .+|++|++..+++.++...
T Consensus 66 ~Idv~~P~~~~~~l~~~r~~F~a~--Gv~l~~~~~~~~l~~~~dK~~~y~~~~~-------~~ipvp~~~~v~t~~el~~ 136 (329)
T PF15632_consen 66 GIDVFVPGRNRELLAAHRDEFEAL--GVKLLTASSAETLELADDKAAFYEFMEA-------NGIPVPPYWRVRTADELKA 136 (329)
T ss_pred CCeEEEcCccHHHHHHHHHHHHHh--CCEEEecCCHHHHHHHhhHHHHHHHHHh-------CCCCCCCEEEeCCHHHHHH
Confidence 457777776665556677778765 55444 468999999999999999986 7999999999999877653
Q ss_pred hHHHHHhcCCCc---EEEeeCCCCCCCCCcceEEEe-ChhhhhcC----------------------CCCeEEEecccCC
Q 047754 132 DMAIEELKLRFP---LIAKPLEANGSDKSHQMYLIF-DNEGLEVL----------------------EAPILLQEFVNHG 185 (330)
Q Consensus 132 ~~~l~~~~l~fP---~VvKp~~a~Gs~~sh~m~iv~-~~~~L~~l----------------------~~p~vvQefI~h~ 185 (330)
+. +.+++| +.+||..|. ++.|..++. +.++++.+ -+|++++||+ +
T Consensus 137 --a~--~~l~~~~~~~CvKP~~g~---gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL--~ 207 (329)
T PF15632_consen 137 --AY--EELRFPGQPLCVKPAVGI---GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYL--P 207 (329)
T ss_pred --HH--HhcCCCCceEEEecccCC---CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCC--C
Confidence 33 556666 999999965 558999998 44554432 2489999999 5
Q ss_pred CeEEEEEEEC--CeEE-EEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCchHHHHHHHHHHHHHhC
Q 047754 186 GIIFKVYVAG--SSVK-CVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRALREALG 262 (330)
Q Consensus 186 g~~~Kv~ViG--~~v~-~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LG 262 (330)
|.+|.|=|+. +++. ++-|+-.. .. ...+ .++.+.++|.++++.+|
T Consensus 208 G~EySVD~l~~~G~viaaV~R~K~G------~~------------------------q~l~--~~~~l~e~a~~l~~~~~ 255 (329)
T PF15632_consen 208 GPEYSVDCLADEGRVIAAVPRRKLG------RR------------------------QVLE--NDEELIELARRLAEAFG 255 (329)
T ss_pred CCeEEEEEEecCCEEEEEEEEEecC------ce------------------------eEEE--ECHHHHHHHHHHHHHhC
Confidence 8888766554 4666 44465431 00 0011 24567799999999999
Q ss_pred Cc-EEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 263 LN-LFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 263 l~-l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
|+ +++|++..+. +|. ++++|||.=|+
T Consensus 256 l~g~~NiQ~r~d~-~g~-p~LLEINpR~s 282 (329)
T PF15632_consen 256 LDGLFNIQFRYDE-DGN-PKLLEINPRPS 282 (329)
T ss_pred CCceEEEEEEEcC-CCC-EEEEEeCCCCc
Confidence 99 8899999974 454 68999998775
No 66
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.40 E-value=6.1e-11 Score=130.92 Aligned_cols=173 Identities=16% Similarity=0.239 Sum_probs=119.2
Q ss_pred Cceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCc-EEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCC
Q 047754 80 DVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPN-QAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKS 157 (330)
Q Consensus 80 ~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~-~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 157 (330)
|+.++ .++++++.+.||..+.+++.+ .+||+|+ +.++.+.++... .. ..++||+|+||..++ +|
T Consensus 98 Gi~~iGps~ea~~~~~DK~~ar~ll~~-------~GVPt~p~~~lv~s~dea~~--~a--~~igyPvVVKP~~gg---GG 163 (1201)
T TIGR02712 98 GIVFVGPTPEQIRKFGLKHTARELAEA-------AGVPLLPGTGLLSSLDEALE--AA--KEIGYPVMLKSTAGG---GG 163 (1201)
T ss_pred CCcEECCCHHHHHHhcCHHHHHHHHHH-------CCCCCCCceeecCCHHHHHH--HH--HhcCCeEEEEECCCC---CC
Confidence 66544 578999999999999999986 7999855 666676555432 22 678999999998854 46
Q ss_pred cceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECC---eEEEEE-ee-cCCCcchhhhhccCc
Q 047754 158 HQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGS---SVKCVK-RK-SLPDISEEKMKSLKG 219 (330)
Q Consensus 158 h~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~---~v~~~~-R~-S~~~~~~~~~~~~~g 219 (330)
.||.++.++++|... +.++++||||+ +++.+-|.+++| ++.... |- +...
T Consensus 164 ~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~-g~~eveV~v~~Dg~g~vv~lg~rd~s~qr----------- 231 (1201)
T TIGR02712 164 IGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVE-NARHVEVQIFGDGKGKVVALGERDCSLQR----------- 231 (1201)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC-CCEEEEEEEEECCCCeEEEeeEEEeeeEe-----------
Confidence 899999999888631 34799999997 468898888875 333221 21 1100
Q ss_pred ccccCCcccCCCCCccccccccCCCC--chHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEeeCCCC
Q 047754 220 FLPFSQISSNSVDADEEVDLEKTEMP--REGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 220 ~~~f~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg 290 (330)
. ++ +.-. ..|.+ .++ ..+++.++|.++.++||+.-++ +|++++..++. +||+|||.=++
T Consensus 232 ---~-~~-k~ve-----e~Pap-~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g~-~y~lEVNpRlq 293 (1201)
T TIGR02712 232 ---R-NQ-KVVE-----ETPAP-NLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARDE-FYFLEVNTRLQ 293 (1201)
T ss_pred ---c-Cc-cEEE-----EcCCC-CCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCCC-EEEEEEECCcC
Confidence 0 00 0000 00110 111 2467889999999999998555 99999864453 79999998775
No 67
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.34 E-value=1.1e-10 Score=116.40 Aligned_cols=179 Identities=16% Similarity=0.233 Sum_probs=120.6
Q ss_pred HHHHHHHhCCCceecC-hHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEE--ecCchhhhhhHHHHHhcCCCcEEE
Q 047754 70 QLQQFSSRNPDVRIID-PPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAV--VSETELVTRDMAIEELKLRFPLIA 146 (330)
Q Consensus 70 ~l~~~~~~~p~v~viD-p~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~--~~~~~~~~~~~~l~~~~l~fP~Vv 146 (330)
.+.+..+++ |+..+- ++++++++.||+.+-+++.+ .|||+|+... +.+.++.. . ....++||||+
T Consensus 90 ~fae~~~~~-gl~fiGP~~~~i~~mgdK~~ar~~~~~-------aGVP~vpgs~~~~~~~ee~~---~-~a~~iGyPViv 157 (449)
T COG0439 90 AFAEACAEA-GLTFIGPSAEAIRRMGDKITARRLMAK-------AGVPVVPGSDGAVADNEEAL---A-IAEEIGYPVIV 157 (449)
T ss_pred HHHHHHHHc-CCeeeCcCHHHHHHhhhHHHHHHHHHH-------cCCCcCCCCCCCcCCHHHHH---H-HHHHcCCCEEE
Confidence 444545554 688887 46788889999999999986 8999999872 12222221 1 23678899999
Q ss_pred eeCCCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCeE---E-EEEee-cCCC
Q 047754 147 KPLEANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSSV---K-CVKRK-SLPD 208 (330)
Q Consensus 147 Kp~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~v---~-~~~R~-S~~~ 208 (330)
||..|+ +|.||.+|.+.++|.+. ++-+++|+||+. .+-+=+-|+||.. + ...|- |+.-
T Consensus 158 Ka~~Gg---Gg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~-~rhievqv~gD~~g~~i~l~eRdcsiqr 233 (449)
T COG0439 158 KAAAGG---GGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEG-PRHIEVQVLGDGHGNVIHLGERDCSIQR 233 (449)
T ss_pred EECCCC---CcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccC-CceEEEEEEEcCcccEEEEEeccCCCcC
Confidence 998865 45899999999999752 334999999974 4456788888865 1 23333 3321
Q ss_pred cchhhhhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEe
Q 047754 209 ISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDI 285 (330)
Q Consensus 209 ~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEV 285 (330)
.++ |+-- ..|.+. +++ .+.+.+.|.++.+.+|..-+| +.++.+. +++ +|++|+
T Consensus 234 ---------------r~q-kvie-----eapsp~-~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~~-~yfiEm 289 (449)
T COG0439 234 ---------------RHQ-KVIE-----EAPSPL-LTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDS-NGE-FYFIEM 289 (449)
T ss_pred ---------------Ccc-ceee-----ecCCCC-CCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeC-CCC-EEEEEE
Confidence 111 1110 011111 111 456678889999999999888 9999996 454 799999
Q ss_pred eCC
Q 047754 286 NYL 288 (330)
Q Consensus 286 N~f 288 (330)
|.=
T Consensus 290 N~R 292 (449)
T COG0439 290 NTR 292 (449)
T ss_pred ecc
Confidence 953
No 68
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.34 E-value=1.1e-10 Score=113.47 Aligned_cols=228 Identities=18% Similarity=0.250 Sum_probs=143.5
Q ss_pred HHHHHHCCCeEEEeCCCCCC-C-----------------------cCCCccEEEEccCChh---HHHHHHH-HH-HhCCC
Q 047754 30 ITKATEQGIGLIRIDPDKPL-T-----------------------EQGPFDCIMHKLYGPD---WTQQLQQ-FS-SRNPD 80 (330)
Q Consensus 30 ~~~~~~~Gi~~~~id~~~~l-~-----------------------~q~~~DvilhK~~~~~---~~~~l~~-~~-~~~p~ 80 (330)
..+.++.|+.++.||.+-.. . .+...|+++.=+..+. ....+.+ .+ .++ |
T Consensus 22 c~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~-g 100 (400)
T COG0458 22 CKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKY-G 100 (400)
T ss_pred HHHHHhcCCeEEEEcCCCccccCCchhcceeeeecCcHHHHHHHHHhcCcceeecccCCcchhhHHHHHHHhcchhhc-C
Confidence 45568899999999998311 0 1235688887776653 1122222 11 222 5
Q ss_pred ce-ecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcc
Q 047754 81 VR-IIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQ 159 (330)
Q Consensus 81 v~-viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 159 (330)
+. +..++++|+++.||+.+.+.+.+ .++++| +.+.+..+.... . ...++||+|+||..+- ++.|
T Consensus 101 V~vvgs~~eaI~iaeDr~~fke~m~e-------igi~~P-~~~~~~~~e~~~--~--~~~ig~PvIVrP~~~l---GG~G 165 (400)
T COG0458 101 VEVVGSDPEAIEIAEDKKLFKEAMRE-------IGIPVP-SRIAHSVEEADE--I--ADEIGYPVIVKPSFGL---GGSG 165 (400)
T ss_pred CEEEecCHHHhhhhhhHHHHHHHHHH-------cCCCCC-ccccccHHHHhh--h--HhhcCCCEEEecCcCC---CCCc
Confidence 55 55799999999999999999997 699999 445555444432 2 3678999999998854 4568
Q ss_pred eEEEeChhhhhcC---------CCCeEEEecccCCCeEEEEEEECCeEE-EEEeecCCCcchhhhhccCcccccCCcccC
Q 047754 160 MYLIFDNEGLEVL---------EAPILLQEFVNHGGIIFKVYVAGSSVK-CVKRKSLPDISEEKMKSLKGFLPFSQISSN 229 (330)
Q Consensus 160 m~iv~~~~~L~~l---------~~p~vvQefI~h~g~~~Kv~ViG~~v~-~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~ 229 (330)
..++.|+++|..+ ..+++++|+|. ++..|.+-|+-|.-. +..--++.|+.+. .+
T Consensus 166 ~~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~-G~ke~e~ev~rd~~~n~ivvc~men~dp~---------------gv 229 (400)
T COG0458 166 GGIAYNEEELEEIIEEGLRASPVEEVLIEESII-GWKEFEYEVVRDGKDNCIVVCNMENLDPM---------------GV 229 (400)
T ss_pred eeEEeCHHHHHHHHHhccccCccccceeeeeec-CceEEEEEEEEeCCCCEEEEEeCCccccc---------------cc
Confidence 8999999999863 24799999996 566776666654321 1111122222111 11
Q ss_pred CCCCccccccccCCC-CchHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 230 SVDADEEVDLEKTEM-PREGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 230 ~~~~~~~~~~~~~~~-~~~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
+.+...-..|...-. .....++..+.++.+.||.. =..|++.+++.++ +|||||||.=+|
T Consensus 230 htgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~-~~~viEvNpRvS 291 (400)
T COG0458 230 HTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGG-ELYVIEINPRVS 291 (400)
T ss_pred cccceeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCc-eEEEEEecCCcC
Confidence 111000011111100 01345667899999999998 1229999987666 599999995443
No 69
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.29 E-value=6.6e-10 Score=111.14 Aligned_cols=202 Identities=9% Similarity=0.082 Sum_probs=121.0
Q ss_pred Cceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE-EecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCC
Q 047754 80 DVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQA-VVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKS 157 (330)
Q Consensus 80 ~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~-~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 157 (330)
|++++ .+.++++.+.||..|.++|.+ ++||+|++. ...+.+.... .. ..++||+|+||..+. +|
T Consensus 89 Gi~v~gps~~~a~~e~dK~~~k~~l~~-------~gIptp~~~~~~~~~~e~~~--~~--~~~~~PvVVKP~~~s---gg 154 (435)
T PRK06395 89 GIKVASPTMEAAMIETSKMFMRYLMER-------HNIPGNINFNACFSEKDAAR--DY--ITSMKDVAVKPIGLT---GG 154 (435)
T ss_pred CCcEECCCHHHHHHhhCHHHHHHHHHH-------CCcCCCcccceeCChHHHHH--HH--HhhCCCEEEEeCCCC---CC
Confidence 78876 889999999999999999986 899998543 5544433321 22 456999999997743 56
Q ss_pred cceEEEeC----hhh-hhc------CCCCeEEEecccCCCeEEE--EEEECCeEEEEEeecCCCcchhhhhc-cCccccc
Q 047754 158 HQMYLIFD----NEG-LEV------LEAPILLQEFVNHGGIIFK--VYVAGSSVKCVKRKSLPDISEEKMKS-LKGFLPF 223 (330)
Q Consensus 158 h~m~iv~~----~~~-L~~------l~~p~vvQefI~h~g~~~K--v~ViG~~v~~~~R~S~~~~~~~~~~~-~~g~~~f 223 (330)
.||.++.+ .++ +.. ...++++||||. |..|- +|+=|+.++.. +-.. +.+. .++.+--
T Consensus 155 kGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~--G~E~Svd~~~dg~~~~~l-----~~~~--d~~r~~~~d~gp 225 (435)
T PRK06395 155 KGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMT--GEEFSLQAFSDGKHLSFM-----PIVQ--DYKRAYEGDHGP 225 (435)
T ss_pred CCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecC--CceEEEEEEEcCCeEEEe-----cccc--eeeecccCCCCC
Confidence 89999953 222 221 135799999994 66775 45546665421 1000 0000 0000000
Q ss_pred CCcccCCCCCccc-cccccCCCCc--hHHHHHHHHHHHHHhCC------cEEEEEEEEeCCCCCeeEEEEeeCCCCCC--
Q 047754 224 SQISSNSVDADEE-VDLEKTEMPR--EGFVVELSRALREALGL------NLFNFDLIRDAGERDGYLVIDINYLPGYA-- 292 (330)
Q Consensus 224 ~~~s~~~~~~~~~-~~~~~~~~~~--~~~~~~lA~~~~~~LGl------~l~GvDvi~~~~~g~~~~ViEVN~fPg~~-- 292 (330)
+ +-.-|+... ..+.+ .++. .+.+++++.++.++||. .+..+++++++ +| .+|||+|.=+|=-
T Consensus 226 ~---tGgmG~~s~~~~~~p-~l~~~~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~-~g--p~ViE~n~R~gdpe~ 298 (435)
T PRK06395 226 N---TGGMGSISDRDFSLP-FLSKDAPERAKHILNDIIRAMKDENNPFKGIMYGQFMDTP-NG--VKVIEINARFADPEG 298 (435)
T ss_pred c---cCCCccccCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeC-CC--cEEEEEeCCCCCccH
Confidence 0 000000000 00111 1211 45668999999999994 35569999974 33 5899999877722
Q ss_pred -C-CCCcHHHHHHHHHHHHHh
Q 047754 293 -K-LPGYETLLMDFFLNVAKS 311 (330)
Q Consensus 293 -g-~~~~~~~l~~~i~~~~~~ 311 (330)
- +|.....|.+++...+..
T Consensus 299 ~~il~~l~~d~~~~~~~~~~g 319 (435)
T PRK06395 299 INVLYLLKSDFVETLHQIYSG 319 (435)
T ss_pred HhhhhhcccCHHHHHHHHhcC
Confidence 1 155667777777766655
No 70
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.21 E-value=2.7e-10 Score=103.36 Aligned_cols=158 Identities=18% Similarity=0.267 Sum_probs=102.6
Q ss_pred CHHHHHHHHHhhhhhhcCCCccCCcEEEe--cCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC
Q 047754 95 NRDSMLEVVSRLKIELNKEKVSVPNQAVV--SETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL 172 (330)
Q Consensus 95 dR~~~~~~L~~~~~~~~~~~i~~P~~~~~--~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l 172 (330)
||....+++.+ .++|+|+.... ++.+.+.. . ..+++||+++||..+. ++++|.++++.++|.+.
T Consensus 1 Dk~~~~~~~~~-------~gvp~~pg~~~~~~~~eea~~--~--a~~iGyPVliKas~gg---GG~gm~iv~~~~eL~~~ 66 (211)
T PF02786_consen 1 DKIRFRKLAKK-------LGVPVPPGSTVPISSVEEALE--F--AEEIGYPVLIKASAGG---GGRGMRIVHNEEELEEA 66 (211)
T ss_dssp SHHHHHHHHHH-------TT-BBSSBESSSBSSHHHHHH--H--HHHH-SSEEEEETTSS---TTTSEEEESSHHHHHHH
T ss_pred CHHHHHHHHHH-------CCCCcCCCCCCCCCCHHHHHH--H--HHhcCCceEEeecccc---cccccccccchhhhhhh
Confidence 78888888886 69999998876 55555432 2 3678999999998864 46899999999999752
Q ss_pred -------------CCCeEEEecccCCCeEEEEEEECCe---EE-EEEeec-CCCcchhhhhccCcccccCCcccCCCCCc
Q 047754 173 -------------EAPILLQEFVNHGGIIFKVYVAGSS---VK-CVKRKS-LPDISEEKMKSLKGFLPFSQISSNSVDAD 234 (330)
Q Consensus 173 -------------~~p~vvQefI~h~g~~~Kv~ViG~~---v~-~~~R~S-~~~~~~~~~~~~~g~~~f~~~s~~~~~~~ 234 (330)
+.++++++|+. +.+.+-|=|++|. +. ...|-. .+- ++++.+
T Consensus 67 ~~~~~~~s~~~fg~~~v~iek~i~-~~reiEvqvi~D~~gn~~~~~~~e~~~~~---------------hs~dsi----- 125 (211)
T PF02786_consen 67 FERAQRESPAAFGDGPVLIEKFIE-GAREIEVQVIRDGKGNVVHLGERECSEQR---------------HSQDSI----- 125 (211)
T ss_dssp HHHHHHHHHHHHSTS-EEEEE--S-SEEEEEEEEEEETTSEEEEEEEEEEEEEE---------------TTEEEE-----
T ss_pred hhhccccCccccccceEEEeeehh-hhhhhhhhhhhccccceeeeeeecccccc---------------ccccce-----
Confidence 57999999997 4567777777762 22 233331 110 111000
Q ss_pred cccccccCCCCc--hHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEeeCCCC
Q 047754 235 EEVDLEKTEMPR--EGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 235 ~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEVN~fPg 290 (330)
.-.|. ..+++ .+.++++|.++++.||+.-.| |=++++..++ .+||+|||..-+
T Consensus 126 -~~~P~-~~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~-~~y~lEvNpR~~ 181 (211)
T PF02786_consen 126 -EEAPA-QTLSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDG-EFYFLEVNPRLQ 181 (211)
T ss_dssp -EEES--SSS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTT-EEEEEEEESS--
T ss_pred -eEeec-cccchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCcc-ceeeecccCCCC
Confidence 00011 11222 467889999999999999666 9999996445 599999996544
No 71
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=99.20 E-value=8.8e-10 Score=97.28 Aligned_cols=169 Identities=14% Similarity=0.208 Sum_probs=104.4
Q ss_pred ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEe
Q 047754 85 DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIF 164 (330)
Q Consensus 85 Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~ 164 (330)
|++.|+..+.||=-...-|.++....+...+|.=.+....+.... + ..-.||+|+| .|++- .+-|-..+.
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh~em-----~--s~~~fPvVvK--vG~~h-~G~GKvkv~ 70 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNHREM-----L--SAPRFPVVVK--VGHAH-AGMGKVKVD 70 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESSGGGG-----C--S-SSSSEEEE--ESS-S-TTTTEEEE-
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCChhhh-----c--cCCCCCEEEE--Ecccc-CceeEEEEc
Confidence 688999999999433333333433334445554333333332221 2 3358999999 55544 456777999
Q ss_pred ChhhhhcC-------CCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCcccc
Q 047754 165 DNEGLEVL-------EAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEV 237 (330)
Q Consensus 165 ~~~~L~~l-------~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~ 237 (330)
|...+.++ +.=+-++-||+ ...|++|--||+++-+++|+|+.. .|++ |. |
T Consensus 71 n~~~~qDi~sll~~~~~Y~T~EPfId-~kyDirvqkIG~~ykA~~R~sis~----nWK~-----------N~--g----- 127 (203)
T PF02750_consen 71 NQQDFQDIASLLAITKDYATTEPFID-AKYDIRVQKIGNNYKAYMRTSISG----NWKA-----------NT--G----- 127 (203)
T ss_dssp SHHHHHHHHHHHHHHTS-EEEEE----EEEEEEEEEETTEEEEEEEEESSS----TSST-----------TS--S-----
T ss_pred cHHHHHHHHHHHHhcCceEEeecccc-ceeEEEEEEEcCeEEEEEEccccc----cccc-----------cc--c-----
Confidence 99888764 56678889996 478999999999999999999742 3543 22 1
Q ss_pred ccccCCCCchHHHHHHHHHHHHHh-CCcEEEEEEEEeCCCCCeeEEEEeeCC
Q 047754 238 DLEKTEMPREGFVVELSRALREAL-GLNLFNFDLIRDAGERDGYLVIDINYL 288 (330)
Q Consensus 238 ~~~~~~~~~~~~~~~lA~~~~~~L-Gl~l~GvDvi~~~~~g~~~~ViEVN~f 288 (330)
......++..++.+.-+.++++.+ ||+++++|+|... +|+ .||+|||..
T Consensus 128 sa~lEqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~k-dGk-e~Iievnds 177 (203)
T PF02750_consen 128 SAMLEQIAMTERYKLWVDECSELFGGLDICAVDAIHGK-DGK-EYIIEVNDS 177 (203)
T ss_dssp SEEEEEE---HHHHHHHHHHGGGGG--SEEEEEEEEET-TS--EEEEEEE-T
T ss_pred chheeecCCChHHHHHHHHHHHHcCCccEEEEEEEEcC-CCC-EEEEEecCC
Confidence 112222334677788889999999 9999999999985 676 589999975
No 72
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=99.19 E-value=3e-10 Score=99.90 Aligned_cols=138 Identities=21% Similarity=0.297 Sum_probs=76.5
Q ss_pred cCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeCh-hhhhc--------CCCCeEEEecccC-C
Q 047754 116 SVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDN-EGLEV--------LEAPILLQEFVNH-G 185 (330)
Q Consensus 116 ~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~-~~L~~--------l~~p~vvQefI~h-~ 185 (330)
.+|+|++..+...... .+.+.+ . +|+||+.+. ++.++..+... ..+.. ...|+++|+|++. .
T Consensus 11 ~~P~T~vs~~~~~i~~--f~~~~~--~-~VlKPl~g~---gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~ 82 (173)
T PF02955_consen 11 LIPPTLVSRDKEEIRA--FIEEHG--D-IVLKPLDGM---GGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEIK 82 (173)
T ss_dssp CS--EEEES-HHHHHH--HHHHHS--S-EEEEESS-----TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGG
T ss_pred cCcCEEEECCHHHHHH--HHHHCC--C-EEEEECCCC---CCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEecccccc
Confidence 4699999988766543 343333 3 999999965 35788888773 22221 2468999999985 2
Q ss_pred CeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCchHHHHHHHHHHHHHh---C
Q 047754 186 GIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRALREAL---G 262 (330)
Q Consensus 186 g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~L---G 262 (330)
.-|.|+++++++...+.||-.. .++++. |++.|+. ....++ .+...++|.++...| |
T Consensus 83 ~GDkRii~~nG~~~~av~R~P~---~gd~R~-----------N~~~Gg~----~~~~~l--t~~e~~i~~~i~~~L~~~G 142 (173)
T PF02955_consen 83 EGDKRIILFNGEPSHAVRRIPA---KGDFRS-----------NLAAGGS----AEPAEL--TEREREICEQIGPKLREDG 142 (173)
T ss_dssp G-EEEEEEETTEE-SEEEEE-----SS-S--------------GGGTSC----EEEEE----HHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCEEhHHeecCCC---CCCcee-----------eeccCCc----eeecCC--CHHHHHHHHHHHHHHhhcC
Confidence 2389999999998866655321 123332 6666632 233332 344457777777666 8
Q ss_pred CcEEEEEEEEeCCCCCeeEEEEeeCC
Q 047754 263 LNLFNFDLIRDAGERDGYLVIDINYL 288 (330)
Q Consensus 263 l~l~GvDvi~~~~~g~~~~ViEVN~f 288 (330)
+-++|+|+| + + ++.|||.+
T Consensus 143 l~f~GiDvi---g--~--~l~EiNvt 161 (173)
T PF02955_consen 143 LLFVGIDVI---G--D--KLTEINVT 161 (173)
T ss_dssp --EEEEEEE---T--T--EEEEEE-S
T ss_pred cEEEEEecc---c--c--ceEEEecc
Confidence 899999999 2 2 58999965
No 73
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.14 E-value=2.3e-09 Score=98.07 Aligned_cols=166 Identities=20% Similarity=0.217 Sum_probs=100.6
Q ss_pred hHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeC
Q 047754 86 PPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFD 165 (330)
Q Consensus 86 p~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~ 165 (330)
+++||+.|.||+.++..|.+ .+++|+|..+.. ..--.|+||..|||+ .++....+
T Consensus 105 S~~Ai~v~aDK~lty~aLr~--------aV~~p~t~e~~~--------------~~~k~ViKp~dgCgg---e~i~~~~~ 159 (307)
T COG1821 105 SPRAIRVAADKRLTYKALRD--------AVKQPPTREWAE--------------EPKKYVIKPADGCGG---EGILFGRD 159 (307)
T ss_pred CHHHHhHhhhHHHHHHHHhh--------hccCCCcccccc--------------CCceEEecccccCCc---ceeeccCC
Confidence 68999999999999999984 499999874322 222489999999877 34444333
Q ss_pred hhhhhcCCCCeEEEecccCCCeEEEE-EEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCC
Q 047754 166 NEGLEVLEAPILLQEFVNHGGIIFKV-YVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEM 244 (330)
Q Consensus 166 ~~~L~~l~~p~vvQefI~h~g~~~Kv-~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~ 244 (330)
... .+++||||+ |.-+.| ..+|+++. |. +.|+ + +.-|. .|.+.-. +...+.+-
T Consensus 160 ~pd------~~i~qEfIe--G~~lSVSL~~GEkv~-------pL-svNr---Q--fi~~~-~~~~~y~----gg~~pi~h 213 (307)
T COG1821 160 FPD------IEIAQEFIE--GEHLSVSLSVGEKVL-------PL-SVNR---Q--FIIFA-GSELVYN----GGRTPIDH 213 (307)
T ss_pred Ccc------hhhHHHhcC--CcceEEEEecCCccc-------cc-eech---h--hhhhc-cceeeec----cCcCCCCc
Confidence 322 399999996 443433 55677763 31 1110 0 00010 0011110 11222222
Q ss_pred CchHHHHHHHHHHHHHhC-Cc-EEEEEEEEeCCCCCeeEEEEeeCCCC--CCCCCC-cHHHHHHHHH
Q 047754 245 PREGFVVELSRALREALG-LN-LFNFDLIRDAGERDGYLVIDINYLPG--YAKLPG-YETLLMDFFL 306 (330)
Q Consensus 245 ~~~~~~~~lA~~~~~~LG-l~-l~GvDvi~~~~~g~~~~ViEVN~fPg--~~g~~~-~~~~l~~~i~ 306 (330)
+..+.+-+.|.++.+.++ |+ ++|||++..+ ..||||||.=|- +-|+.. ..+.+.+.++
T Consensus 214 e~k~~~~~~Ai~aVeci~Gl~GYVGVDlVlsD----~pYvIEINpR~TTp~vg~sr~~~~sv~~LLl 276 (307)
T COG1821 214 ELKREAFEEAIRAVECIPGLNGYVGVDLVLSD----EPYVIEINPRPTTPTVGLSRVTPESVAELLL 276 (307)
T ss_pred HHHHHHHHHHHHHHHhhccccceeeEEEEecC----CcEEEEecCCCCcceeeeeccccHHHHHHHh
Confidence 235667788999999887 65 8899999873 258999998875 333333 2344444443
No 74
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.13 E-value=1.2e-08 Score=95.91 Aligned_cols=226 Identities=15% Similarity=0.222 Sum_probs=149.2
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCC-----------------------cCCCccEEEEccCChhHHHHHHHHHHhCCCcee
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLT-----------------------EQGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRI 83 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~-----------------------~q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~v 83 (330)
+++.-.|-++|++++.+|-=..-. ++...|.|+.-+-.- ....|.++.++ |..|
T Consensus 25 KEvaIe~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEAI-~td~L~elE~~--G~~V 101 (394)
T COG0027 25 KEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAI-ATDALVELEEE--GYTV 101 (394)
T ss_pred hHHHHHHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhhh-hHHHHHHHHhC--CceE
Confidence 456666889999999998643211 123455555543322 24556666554 8889
Q ss_pred cChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEE
Q 047754 84 IDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLI 163 (330)
Q Consensus 84 iDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv 163 (330)
|-...+.+.++||...-++.++ .-|+||-++....+.+.... ....++||+||||+.+ +.+||=+++
T Consensus 102 VP~ArAt~ltMnRegiRrlAAe------eLglpTs~Y~fa~s~~e~~~----a~~~iGfPcvvKPvMS---SSGkGqsvv 168 (394)
T COG0027 102 VPNARATKLTMNREGIRRLAAE------ELGLPTSKYRFADSLEELRA----AVEKIGFPCVVKPVMS---SSGKGQSVV 168 (394)
T ss_pred ccchHHHHhhhcHHHHHHHHHH------HhCCCCccccccccHHHHHH----HHHHcCCCeecccccc---cCCCCceee
Confidence 9999999999999877666654 35899999988887766543 2378999999999993 368999999
Q ss_pred eChhhhhcC-----------CCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCC--cch-hhhhccCcccccCCcccC
Q 047754 164 FDNEGLEVL-----------EAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPD--ISE-EKMKSLKGFLPFSQISSN 229 (330)
Q Consensus 164 ~~~~~L~~l-----------~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~--~~~-~~~~~~~g~~~f~~~s~~ 229 (330)
.+++++... +.-+++++||+ .||-+-.+ +.|.--++ |.. =+-++.+|.|.= |
T Consensus 169 ~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~---fd~EiTlL------tvr~~~~~~~Fc~PIGHrq~dgdY~E-S---- 234 (394)
T COG0027 169 RSPEDVEKAWEYAQQGGRGGSGRVIVEEFVK---FDFEITLL------TVRAVDGTGSFCAPIGHRQEDGDYRE-S---- 234 (394)
T ss_pred cCHHHHHHHHHHHHhcCCCCCCcEEEEEEec---ceEEEEEE------EEEEecCCCCcCCCcccccCCCChhc-c----
Confidence 999999753 45799999996 34543332 11211111 100 011111222200 0
Q ss_pred CCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 230 SVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 230 ~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
. .|..+.. .+..+.+|+++.++||.. +|||.+++. |++.++-||-.=|-=+|+
T Consensus 235 -------W--QP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~---gDeV~FsEVSPRPHDTGm 290 (394)
T COG0027 235 -------W--QPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVK---GDEVIFSEVSPRPHDTGM 290 (394)
T ss_pred -------c--CccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEe---CCEEEEeecCCCCCCCce
Confidence 1 1112221 356689999999999865 999999976 346899999999977776
No 75
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.12 E-value=1.5e-08 Score=102.59 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=91.2
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCCcCCCccEEEEccCChhHHHHHHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHh
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSR 105 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~~q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~ 105 (330)
+.+++.|++.+++++.+.++. .. .+.+...+.+ -|++++ .+.++.+.++||..|-++|.+
T Consensus 59 ~~l~~~a~~~~id~Vi~g~E~-----------------~l-~~glad~l~~-~Gi~v~Gps~~aa~le~dK~~~K~~l~~ 119 (486)
T PRK05784 59 EEVKKVAKEVNPDLVVIGPEE-----------------PL-FAGVADVLRE-EGFPVFGASSKCARIEKSKVWARELMWK 119 (486)
T ss_pred HHHHHHHHHhCCCEEEECCch-----------------HH-HHHHHHHHHh-CCCCEECCcHHHHHHhcCHHHHHHHHHH
Confidence 456667777666666554331 11 2334344433 378765 788999999999999999986
Q ss_pred hhhhhcCCCccCC-cEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhh---------h----hc
Q 047754 106 LKIELNKEKVSVP-NQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEG---------L----EV 171 (330)
Q Consensus 106 ~~~~~~~~~i~~P-~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~---------L----~~ 171 (330)
++||+| .+..+.+.+.+.. .+ ... +|+|+||..+. +|.||.++.+.++ + .+
T Consensus 120 -------~gIpt~~~~~~~~~~~ea~~--~~--~~~-~PvVVKP~~~a---ggkGV~iv~~~~e~~~~~~~ea~~~a~~~ 184 (486)
T PRK05784 120 -------YSIPGRLRYKVFYDVEEAAK--FI--EYG-GSVAIKPARQA---GGKGVKVIADLQAYLSQEKREALTKSVND 184 (486)
T ss_pred -------cCcCCCccceEeCCHHHHHH--HH--hhc-CCEEEeeCCCC---CCCCEEEECChhHhcchhHHHHHHHHHHH
Confidence 899997 6777776555432 22 223 69999997643 5789999999652 1 11
Q ss_pred ----------CCCCeEEEecccCCCeEEEEEEECC
Q 047754 172 ----------LEAPILLQEFVNHGGIIFKVYVAGS 196 (330)
Q Consensus 172 ----------l~~p~vvQefI~h~g~~~Kv~ViG~ 196 (330)
.+..+++||||. |..|-|.++.|
T Consensus 185 ~~~~~~~~g~~~~~VlIEEfL~--G~E~SV~al~d 217 (486)
T PRK05784 185 IKEGSAYYKDVEPKILVEEKVD--GVEYTLQVLTD 217 (486)
T ss_pred HHHhHhhccCCCCeEEEEEccC--CeEEEEEEEEC
Confidence 135799999994 88898877754
No 76
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.11 E-value=1.4e-08 Score=97.95 Aligned_cols=227 Identities=19% Similarity=0.272 Sum_probs=149.0
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCc-CCCccEEEEccCCh------------------hHHHHHHHHHHhCCCceecChHHH
Q 047754 29 LITKATEQGIGLIRIDPDKPLTE-QGPFDCIMHKLYGP------------------DWTQQLQQFSSRNPDVRIIDPPES 89 (330)
Q Consensus 29 l~~~~~~~Gi~~~~id~~~~l~~-q~~~DvilhK~~~~------------------~~~~~l~~~~~~~p~v~viDp~~a 89 (330)
+..+|..+|+.+..+|++.+-.. |---+.+.....|. .+-...-+++..+ +.+--++++
T Consensus 16 m~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~aL~~l~~~--~~v~p~~~~ 93 (375)
T COG0026 16 MALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAEALEKLAAS--VKVFPSPDA 93 (375)
T ss_pred HHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCHHHHHHHHhh--cCcCCCHHH
Confidence 56778999999999999853221 21112333322221 1112223344443 778889999
Q ss_pred HHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhh
Q 047754 90 IERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGL 169 (330)
Q Consensus 90 i~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L 169 (330)
++...||+..-+.|.+ .|+++|++.++++.++... .+ ..++||.|+|...+ |= .++|-.++.+.+++
T Consensus 94 l~~~qdR~~eK~~l~~-------~Gi~va~~~~v~~~~el~~--~~--~~~g~p~VlKtr~g-GY-DGkGQ~~i~~~~~~ 160 (375)
T COG0026 94 LRIAQDRLVEKQFLDK-------AGLPVAPFQVVDSAEELDA--AA--ADLGFPAVLKTRRG-GY-DGKGQWRIRSDADL 160 (375)
T ss_pred HHHHhhHHHHHHHHHH-------cCCCCCCeEEeCCHHHHHH--HH--HHcCCceEEEeccc-cc-cCCCeEEeeCcccc
Confidence 9999999999999986 7999999999999876543 34 67889999999884 45 78999999988776
Q ss_pred hcC-------CCCeEEEecccCCCeEEEEEEECCeE-EEEEeecCCCcchhhhhccCcccccCCcccCCCCCcccccccc
Q 047754 170 EVL-------EAPILLQEFVNHGGIIFKVYVAGSSV-KCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEK 241 (330)
Q Consensus 170 ~~l-------~~p~vvQefI~h~g~~~Kv~ViG~~v-~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~ 241 (330)
... ..| ++++||+- .+++.|.++.+.- .++..|-.-|+..+ |.+.. ...|
T Consensus 161 ~~~~~~~~~~~~~-vlE~fV~F-~~EiSvi~aR~~~G~~~~yP~~eN~h~~------gIl~~--------------siaP 218 (375)
T COG0026 161 ELRAAGLAEGGVP-VLEEFVPF-EREISVIVARSNDGEVAFYPVAENVHRN------GILRT--------------SIAP 218 (375)
T ss_pred hhhHhhhhccCce-eEEeeccc-ceEEEEEEEEcCCCCEEEecccceeeec------CEEEE--------------EEec
Confidence 641 334 99999974 5667777662211 01111211222111 11111 1123
Q ss_pred CCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 242 TEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 242 ~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
+.++. .+..+++|.++.+.|+.- ++|+-+.+.. +| .++|.|+=-=|=-.|.
T Consensus 219 a~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~-dg-~llvNEiAPRvHNSGH 272 (375)
T COG0026 219 ARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTP-DG-ELLVNEIAPRVHNSGH 272 (375)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEEC-CC-cEEEeeccCCCCCccc
Confidence 33332 467789999999999987 8899999885 45 3899998766655554
No 77
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.09 E-value=1.6e-09 Score=95.32 Aligned_cols=150 Identities=21% Similarity=0.291 Sum_probs=95.8
Q ss_pred CCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC-----CCCeEEEecccCCCe
Q 047754 113 EKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL-----EAPILLQEFVNHGGI 187 (330)
Q Consensus 113 ~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~vvQefI~h~g~ 187 (330)
.+||+|++..+.+.++... .+ ..++||+|+|+..+ |. .++|..++.+.+++... ..++++|+||+. .+
T Consensus 4 ~gip~~~~~~i~~~~~l~~--a~--~~iG~P~vlK~~~~-GY-DGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f-~~ 76 (172)
T PF02222_consen 4 LGIPTAPYATIDSLEDLEE--AA--ESIGFPAVLKTRRG-GY-DGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPF-DR 76 (172)
T ss_dssp TT--B-EEEEESSHHHHHH--HH--HHHTSSEEEEESSS-SC-TTTTEEEESSGGGHHHHHHHTTTSCEEEEE---E-SE
T ss_pred cCCCCCCeEEECCHHHHHH--HH--HHcCCCEEEEccCc-Cc-CCCccEEECCHHHHHHHHHhcCCCcEEEEeccCC-cE
Confidence 6999999999999887653 33 67999999998885 44 68999999999998763 679999999984 66
Q ss_pred EEEEEEECCeE-EEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc
Q 047754 188 IFKVYVAGSSV-KCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN 264 (330)
Q Consensus 188 ~~Kv~ViG~~v-~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~ 264 (330)
++-|.++.+.- .+...+..-|...+ +.+.. ...|+.++. .++++++|.++.+.|+.-
T Consensus 77 EiSvivaR~~~G~~~~yp~~en~~~~------~il~~--------------s~~Pa~i~~~~~~~a~~ia~~i~~~l~~v 136 (172)
T PF02222_consen 77 EISVIVARDQDGEIRFYPPVENVHRD------GILHE--------------SIAPARISDEVEEEAKEIARKIAEALDYV 136 (172)
T ss_dssp EEEEEEEEETTSEEEEEEEEEEEEET------TEEEE--------------EEESCSS-HHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEEEEEEcCCCCEEEEcCceEEEEC------CEEEE--------------EECCCCCCHHHHHHHHHHHHHHHHHcCcE
Confidence 77777664321 01111111111110 11111 012233322 567889999999999876
Q ss_pred -EEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 265 -LFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 265 -l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
+|+|.+.+.. +|+.+||.||-.=|-
T Consensus 137 Gv~~VE~Fv~~-~g~~v~vNEiaPRpH 162 (172)
T PF02222_consen 137 GVLAVEFFVTK-DGDEVLVNEIAPRPH 162 (172)
T ss_dssp EEEEEEEEEET-TSTEEEEEEEESS--
T ss_pred EEEEEEEEEec-CCCEEEEEeccCCcc
Confidence 8899999985 554589999975553
No 78
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.06 E-value=1.4e-08 Score=95.11 Aligned_cols=189 Identities=18% Similarity=0.251 Sum_probs=117.7
Q ss_pred HHhCCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCC
Q 047754 75 SSRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGS 154 (330)
Q Consensus 75 ~~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs 154 (330)
++++++++++|| ...|||.+++.|.+-. .-.=..|.|..+.+.++... .|..-+ -+++||..| |
T Consensus 3 ~k~~~~i~~~n~-----~~~~Kw~v~~~L~~~~----~l~~~LP~T~~~~~~~~l~~--~L~~y~---~vylKP~~G--s 66 (262)
T PF14398_consen 3 LKKQKGIPFFNP-----GFFDKWEVYKALSRDP----ELRPYLPETELLTSFEDLRE--MLNKYK---SVYLKPDNG--S 66 (262)
T ss_pred hHhcCCCEEeCC-----CCCCHHHHHHHHHcCC----cchhhCCCceEcCCHHHHHH--HHHHCC---EEEEEeCCC--C
Confidence 456789999998 4699999999998521 11234899999988766653 343332 689999885 4
Q ss_pred CCCcceEEEeChh----------------------hhhc-----C-CCCeEEEecccC---C--CeEEEEEEECC---eE
Q 047754 155 DKSHQMYLIFDNE----------------------GLEV-----L-EAPILLQEFVNH---G--GIIFKVYVAGS---SV 198 (330)
Q Consensus 155 ~~sh~m~iv~~~~----------------------~L~~-----l-~~p~vvQefI~h---~--g~~~Kv~ViG~---~v 198 (330)
.+.|+..+.-.. +|.. + +.++++||.|+- + -.|+||.|--+ .|
T Consensus 67 -~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W 145 (262)
T PF14398_consen 67 -KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKW 145 (262)
T ss_pred -CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCE
Confidence 455655554421 1111 1 348999999984 3 46889999843 45
Q ss_pred EE---EEeecCCCcchhhhhccCcccccCCcccCCCCCccc-cc---cccCC-CCchHHH----HHHHHHHHHHhCC--c
Q 047754 199 KC---VKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEE-VD---LEKTE-MPREGFV----VELSRALREALGL--N 264 (330)
Q Consensus 199 ~~---~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~-~~---~~~~~-~~~~~~~----~~lA~~~~~~LGl--~ 264 (330)
.+ +.|...++ .+.| |++.|+... .. ....+ ....+.+ ..+|..+.+.+|. .
T Consensus 146 ~vtg~~~Rva~~~----~ivT-----------N~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~g 210 (262)
T PF14398_consen 146 QVTGIVARVAKPG----SIVT-----------NLSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLG 210 (262)
T ss_pred EEEEEEEEEcCCC----Ccee-----------ccCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 53 44665543 1111 555554310 00 00000 0012333 4555666666774 5
Q ss_pred EEEEEEEEeCCCCCeeEEEEeeCCCCCCCCCCc
Q 047754 265 LFNFDLIRDAGERDGYLVIDINYLPGYAKLPGY 297 (330)
Q Consensus 265 l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~ 297 (330)
-+|+|+.+|. +|+ +++||||.-||-..+...
T Consensus 211 ElGiDl~iD~-~g~-iWliEvN~kP~~~~~~~~ 241 (262)
T PF14398_consen 211 ELGIDLGIDK-NGK-IWLIEVNSKPGKFDFRDI 241 (262)
T ss_pred EEEEEEEEcC-CCC-EEEEEEeCCCCcchhhcc
Confidence 6799999995 564 899999999997777663
No 79
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=98.99 E-value=2.5e-08 Score=94.37 Aligned_cols=223 Identities=15% Similarity=0.176 Sum_probs=135.6
Q ss_pred CcchHHHHHHHHCCCeEEEeCCCCCCCcCCCccEEEE--------c--cCChhHH-HHHHHHHHhC-------C------
Q 047754 24 VIQPSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMH--------K--LYGPDWT-QQLQQFSSRN-------P------ 79 (330)
Q Consensus 24 ~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~~Dvilh--------K--~~~~~~~-~~l~~~~~~~-------p------ 79 (330)
++++.+.+-|.+.|+++--++.=.|..-++..+.++- | -.+++|. ..+.++..+. .
T Consensus 19 vntR~vveSA~klGf~V~sv~~y~~~Dl~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~~ii~~sg~e~l~ 98 (389)
T COG2232 19 VNTRPVVESASKLGFEVYSVQYYDPADLPGDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDAPIIPFSGFEALR 98 (389)
T ss_pred ecchHhHHHHHhcCeEEEEeEeecccccccccceEEEecChhhcCcccCCCHHHHHHHHHhhhhhcceeeeecccccccc
Confidence 3667899999999999888876655444444444441 1 1123442 2233332211 0
Q ss_pred -------CceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCC
Q 047754 80 -------DVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEAN 152 (330)
Q Consensus 80 -------~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~ 152 (330)
++.=.+|-..+..+-||..++..|.. -+++.|.+.-++ .+ ..-..|+|.||+.|.
T Consensus 99 ~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~-------lgmp~p~~~~~e---------~~--~~gekt~IlKPv~Ga 160 (389)
T COG2232 99 TSGELGCEVAGNEPEVKVVEASNKLKFYRKLEV-------LGMPEPSEKKIE---------PL--EEGEKTLILKPVSGA 160 (389)
T ss_pred ccCccccccccCCcHHHHHHHHHHHhhhhhhhh-------cCCCCChhhhhh---------hh--hhcceeeEEeeccCC
Confidence 12222566699999999999999986 477777653221 12 223468999999975
Q ss_pred CCCCCcceEEEeChhhhhcCCCCeEEEecccCCCeEEEEEEECC----eEEEEEeecCCCcchhhhhccCcccccCCccc
Q 047754 153 GSDKSHQMYLIFDNEGLEVLEAPILLQEFVNHGGIIFKVYVAGS----SVKCVKRKSLPDISEEKMKSLKGFLPFSQISS 228 (330)
Q Consensus 153 Gs~~sh~m~iv~~~~~L~~l~~p~vvQefI~h~g~~~Kv~ViG~----~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~ 228 (330)
|. + .-++.-.++.. -.++++|||| .|+-..|-+|++ ...++-+.-+ ++ .....+.|.|.- |
T Consensus 161 GG--~--~el~~~~Ee~~--~~~~i~Qefi--~G~p~Svs~is~g~~a~~la~N~QiI-~~----~~~~~~~f~Y~G--N 225 (389)
T COG2232 161 GG--L--VELVKFDEEDP--PPGFIFQEFI--EGRPVSVSFISNGSDALTLAVNDQII-DG----LRGEYSQFVYKG--N 225 (389)
T ss_pred Cc--e--eeecccccccC--Ccceehhhhc--CCceeEEEEEecCcceEEEEEeeeee-cc----cccccccceecc--C
Confidence 44 2 33333223332 3789999999 699999999988 3433433322 11 011112233322 2
Q ss_pred CCCCCccccccccCCCCchHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 229 NSVDADEEVDLEKTEMPREGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
+ ++....+.++++++|..+...|||- .-|||+++.+ .| +|||||| |=+.|.
T Consensus 226 l----------TP~~~~~~ee~e~la~elV~~lgL~GsnGVDfvl~d-~g--pyViEVN--PR~qGt 277 (389)
T COG2232 226 L----------TPFPYEEVEEAERLAEELVEELGLVGSNGVDFVLND-KG--PYVIEVN--PRIQGT 277 (389)
T ss_pred c----------CCCcchhhHHHHHHHHHHHHHhccccccccceEeec-CC--cEEEEec--Ccccch
Confidence 2 2222123467899999999999997 5589999985 34 5899999 555555
No 80
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.87 E-value=3.9e-07 Score=86.39 Aligned_cols=195 Identities=16% Similarity=0.200 Sum_probs=116.9
Q ss_pred ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecC--------chhhhhhHHHHHhcCCCcEEEeeCCCCCCCC
Q 047754 85 DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSE--------TELVTRDMAIEELKLRFPLIAKPLEANGSDK 156 (330)
Q Consensus 85 Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~--------~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~ 156 (330)
||......+.||..+.+++.+ .+|++|+.+.... ..+.+.+..+.......++|+||.. || +
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~-------~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~--G~-~ 85 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRD-------YGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPAN--GS-G 85 (285)
T ss_pred CchhhccccCCHHHHHHHHHH-------hcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCC--CC-C
Confidence 899999999999999999986 7999999432111 1122223233333335899999987 45 5
Q ss_pred CcceEEEeChhh---------hhc----C-CCCeEEEecccC----------CCeEEEEEEECC----eEE-EEEeecCC
Q 047754 157 SHQMYLIFDNEG---------LEV----L-EAPILLQEFVNH----------GGIIFKVYVAGS----SVK-CVKRKSLP 207 (330)
Q Consensus 157 sh~m~iv~~~~~---------L~~----l-~~p~vvQefI~h----------~g~~~Kv~ViG~----~v~-~~~R~S~~ 207 (330)
++|+.++...++ +.+ . +..+++||+|.- .=..+||.++=+ ++. +++|-+..
T Consensus 86 G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~lRlg~~ 165 (285)
T PF14397_consen 86 GKGILVIDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAMLRLGRG 165 (285)
T ss_pred ccCEEEEEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEEEeCCC
Confidence 788888877652 111 1 127999999973 334789887722 333 45565421
Q ss_pred -----Ccchhhh----hccCccccc---CC-cccC--CCCCccccccccCCCCchHHHHHHHHHHHHHh-CCcEEEEEEE
Q 047754 208 -----DISEEKM----KSLKGFLPF---SQ-ISSN--SVDADEEVDLEKTEMPREGFVVELSRALREAL-GLNLFNFDLI 271 (330)
Q Consensus 208 -----~~~~~~~----~~~~g~~~f---~~-~s~~--~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~L-Gl~l~GvDvi 271 (330)
|+..|.+ +-.+|.-.+ +. ...+ +.. +...-....+|.=+++.++|.++++.+ ++.+.|.||+
T Consensus 166 ~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPd--Tg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDva 243 (285)
T PF14397_consen 166 GSGVDNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPD--TGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVA 243 (285)
T ss_pred CCcccccCCCCEEEEEecCCCccccccccCCCCEeeeCCC--CCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEE
Confidence 2333221 111120000 00 0000 000 000011124454567789999988665 7999999999
Q ss_pred EeCCCCCeeEEEEeeCC--CCCCCC
Q 047754 272 RDAGERDGYLVIDINYL--PGYAKL 294 (330)
Q Consensus 272 ~~~~~g~~~~ViEVN~f--Pg~~g~ 294 (330)
++. +| .++||.|+. ||+.-.
T Consensus 244 it~-~G--p~llE~N~~~~pgl~~~ 265 (285)
T PF14397_consen 244 ITE-DG--PVLLEGNARWDPGLMIQ 265 (285)
T ss_pred EcC-CC--cEEEEeeCCCCCCcHhh
Confidence 996 45 589999999 998744
No 81
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.85 E-value=1.2e-07 Score=94.09 Aligned_cols=177 Identities=13% Similarity=0.197 Sum_probs=116.9
Q ss_pred CCceecC-hHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCC
Q 047754 79 PDVRIID-PPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKS 157 (330)
Q Consensus 79 p~v~viD-p~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 157 (330)
.|+..|- |+.+|+-..||..+-+++.. +++|+=+-.--...++.+ +.+ ...+++||+++|+..|+ ++
T Consensus 94 ~Gi~FiGP~~~aIrdMG~K~~sk~im~~-------AgVp~vpG~~g~~qs~e~-~~~-~a~eIgyPvMiKa~~GG---GG 161 (670)
T KOG0238|consen 94 AGITFIGPPPSAIRDMGDKSTSKQIMKA-------AGVPLVPGYHGEDQSDEE-AKK-VAREIGYPVMIKATAGG---GG 161 (670)
T ss_pred cCCeEECCCHHHHHHhcchHHHHHHHHh-------cCCccccCcccccccHHH-HHH-HHHhcCCcEEEEeccCC---CC
Confidence 4888887 56789999999998888875 778764443222222222 112 34889999999998864 46
Q ss_pred cceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccC
Q 047754 158 HQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFS 224 (330)
Q Consensus 158 h~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~ 224 (330)
.||.++.+++++.+. +..++++.||. +.|-+-|=|.||+.-=+ +..++.+ ....=.
T Consensus 162 kGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~-npRHiEvQv~gD~hGna-------v~l~ERd---CSvQRR 230 (670)
T KOG0238|consen 162 KGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFID-NPRHIEVQVFGDKHGNA-------VHLGERD---CSVQRR 230 (670)
T ss_pred cceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhcc-CCceEEEEEEecCCCcE-------EEecccc---cchhhh
Confidence 899999999887642 46899999998 46667888888875211 0000100 000000
Q ss_pred CcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEeeC
Q 047754 225 QISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDINY 287 (330)
Q Consensus 225 ~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEVN~ 287 (330)
+| |+-. ..|.+ .++. ...+.+.|.++++++|..-+| |.+|+|+ .+ .+|++|+|.
T Consensus 231 nQ-KiiE-----EaPap-~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~-~~-~FyFmEmNT 287 (670)
T KOG0238|consen 231 NQ-KIIE-----EAPAP-NLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDS-KD-NFYFMEMNT 287 (670)
T ss_pred hh-hhhh-----cCCCC-CCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcC-CC-cEEEEEeec
Confidence 11 2111 11222 2222 456789999999999999999 9999997 34 489999995
No 82
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=98.73 E-value=7.8e-08 Score=89.90 Aligned_cols=170 Identities=18% Similarity=0.202 Sum_probs=106.9
Q ss_pred ecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCc---c
Q 047754 83 IIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSH---Q 159 (330)
Q Consensus 83 viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh---~ 159 (330)
++-+...++-+.+|=..|....+ .++++|+|+.+.+..+.. ..++.||+|+||-.+. |.-.. .
T Consensus 102 ~lp~w~~l~wlceKPllY~ra~e-------lgl~~P~Ty~v~S~~d~~------~~el~FPvILKP~mgg-~~~~~araK 167 (415)
T COG3919 102 PLPDWALLRWLCEKPLLYNRAEE-------LGLPYPKTYLVNSEIDTL------VDELTFPVILKPGMGG-SVHFEARAK 167 (415)
T ss_pred CCCcHHHHHHHhhCcHHHHHHHH-------hCCCCcceEEecchhhhh------hhheeeeEEecCCCCC-cceeehhhh
Confidence 34456777888888888888776 599999999999765543 2679999999999864 31222 2
Q ss_pred eEEEeChhhhhcC---------CCCeEEEecccCCCeEEE---EEEECCeEE--EEEeecCCCcchhhhhccCcccccCC
Q 047754 160 MYLIFDNEGLEVL---------EAPILLQEFVNHGGIIFK---VYVAGSSVK--CVKRKSLPDISEEKMKSLKGFLPFSQ 225 (330)
Q Consensus 160 m~iv~~~~~L~~l---------~~p~vvQefI~h~g~~~K---v~ViG~~v~--~~~R~S~~~~~~~~~~~~~g~~~f~~ 225 (330)
...+.+.++++.. ...+++||||+.+|---. .++--++-+ +..|+.. +-+.+|
T Consensus 168 a~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~r-----------qyPvdf-- 234 (415)
T COG3919 168 AFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLR-----------QYPVDF-- 234 (415)
T ss_pred eeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhh-----------cCCccc--
Confidence 4445555777642 357999999997654222 222222222 1222221 011111
Q ss_pred cccCCCCCccccccccCCCCchHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 226 ISSNSVDADEEVDLEKTEMPREGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 226 ~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
.+ + ....+++.+..+-+.|+++-+..+-+ +..||+..|.++|. |.++|||.=|+
T Consensus 235 --gy--t------st~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDGs-~KlldvNpRpw 289 (415)
T COG3919 235 --GY--T------STVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGS-YKLLDVNPRPW 289 (415)
T ss_pred --cc--c------cEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCCc-eeEEeecCCCc
Confidence 11 1 01223333444446677777777766 55699999988884 99999999986
No 83
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.71 E-value=8.6e-07 Score=86.54 Aligned_cols=142 Identities=14% Similarity=0.209 Sum_probs=92.8
Q ss_pred hHHHHHHHHCCCeEEEeCCCCC---CCcCCCcc-EEEEc-c---CChh-----------------HH-HHHHHHHHhCCC
Q 047754 27 PSLITKATEQGIGLIRIDPDKP---LTEQGPFD-CIMHK-L---YGPD-----------------WT-QQLQQFSSRNPD 80 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~---l~~q~~~D-vilhK-~---~~~~-----------------~~-~~l~~~~~~~p~ 80 (330)
=.+++.|++.|+..+.+..... +....-.| .+++. . .+.. .. -...+++.. -+
T Consensus 30 L~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~~~di~~~~~~~~l~~~~~iiIp~gs~v~y~~~d~l~~-~~ 108 (358)
T PRK13278 30 LQILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDDFSDILNEAVQEKLREMNAILIPHGSFVAYLGLENVEK-FK 108 (358)
T ss_pred HHHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcchhhhcCHHHHHHHhhcCcEEEeCCCcceeecHHHHHH-CC
Confidence 4578999999999999988753 11111112 22222 1 1110 00 011233332 34
Q ss_pred ceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcce
Q 047754 81 VRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQM 160 (330)
Q Consensus 81 v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m 160 (330)
+++.-..++++...||..+.+.|.+ +||++|+++ .+. ..+.||+|+||.. |+ +++|+
T Consensus 109 ~p~~gn~~~l~~e~dK~~~k~~L~~-------aGIp~p~~~--~~~-----------~~i~~PvIVKp~~--g~-ggkGv 165 (358)
T PRK13278 109 VPMFGNREILRWEADRDKERKLLEE-------AGIRIPRKY--ESP-----------EDIDRPVIVKLPG--AK-GGRGY 165 (358)
T ss_pred CCcCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCEe--CCH-----------HHcCCCEEEEeCC--CC-CCCCe
Confidence 6666677899999999999999986 899999973 221 2357999999954 34 67999
Q ss_pred EEEeChhhhhcC------------CCCeEEEecccCCCeEE--EEEEE
Q 047754 161 YLIFDNEGLEVL------------EAPILLQEFVNHGGIIF--KVYVA 194 (330)
Q Consensus 161 ~iv~~~~~L~~l------------~~p~vvQefI~h~g~~~--Kv~Vi 194 (330)
.++.+++++.+. ...+++||||. |..| -+|+.
T Consensus 166 ~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~--G~e~sv~~f~s 211 (358)
T PRK13278 166 FIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV--GVPYYFHYFYS 211 (358)
T ss_pred EEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC--CcEEEEEEEEe
Confidence 999999887541 46899999995 6655 45553
No 84
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=98.70 E-value=5.2e-07 Score=87.52 Aligned_cols=160 Identities=16% Similarity=0.225 Sum_probs=95.2
Q ss_pred cCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC-
Q 047754 94 HNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL- 172 (330)
Q Consensus 94 ~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l- 172 (330)
+||..++.+|.+ +||++|++.. ++ .++.||+||||..|.|. -|.|..++.|.++|...
T Consensus 125 ~dKk~~yk~L~~-------aGI~~Pk~~~--~p-----------~eId~PVIVKp~~asG~-~srG~f~a~s~eEl~~~a 183 (366)
T PRK13277 125 TGEKNYYWLLEK-------AGIPYPKLFK--DP-----------EEIDRPVIVKLPEAKRR-LERGFFTASSYEDFYEKS 183 (366)
T ss_pred cCHHHHHHHHHH-------cCCCCceeec--Cc-----------cccCccEEEEECCCCCc-cccCeEeeCCHHHHHHHH
Confidence 566777787775 8999999875 11 35789999999987652 37999999999988742
Q ss_pred ----C---------CCeEEEecccCCCeEE--EEEEE--CCeE--EEEEeecCCCcchhhhhccCcccccCCcccCCCCC
Q 047754 173 ----E---------APILLQEFVNHGGIIF--KVYVA--GSSV--KCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDA 233 (330)
Q Consensus 173 ----~---------~p~vvQefI~h~g~~~--Kv~Vi--G~~v--~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~ 233 (330)
+ ...++||||. |..| -+|+- -+++ ....||--.|+ +|......-..+..+.
T Consensus 184 ~~l~~~g~I~~~~~~~~iIQEyI~--G~ey~~d~F~s~l~g~ve~l~id~R~esn~--------dg~~r~pa~~ql~~~~ 253 (366)
T PRK13277 184 EELIKAGVIDREDLKNARIEEYVI--GAHFNFNYFYSPIRDRLELLGIDRRIQSNL--------DGFVRLPAPQQLKLNE 253 (366)
T ss_pred HhhhhcCcccccccccceeEeccC--CCEEEEEEEEeccCCcEEEEEEeecccccc--------ccccccChhhhhhccc
Confidence 1 2347999996 5544 56654 4533 23333311221 1222111000000000
Q ss_pred ----ccccc-ccc-CCCCchHHHHHHHHHHHHHhC-------CcEEEEEEEEeCCCCCeeEEEEeeC
Q 047754 234 ----DEEVD-LEK-TEMPREGFVVELSRALREALG-------LNLFNFDLIRDAGERDGYLVIDINY 287 (330)
Q Consensus 234 ----~~~~~-~~~-~~~~~~~~~~~lA~~~~~~LG-------l~l~GvDvi~~~~~g~~~~ViEVN~ 287 (330)
...|. +.. .+. ..+.+.+++.++.++++ ..-|.+|.++++ +++ ++|+|||.
T Consensus 254 ~p~~vv~G~~p~t~rEs-lle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~-d~~-~~V~EInp 317 (366)
T PRK13277 254 EPRYIEVGHEPATIRES-LLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTP-DLD-FVVYDVAP 317 (366)
T ss_pred CCceEEEcCccccchHH-HHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcC-CCc-EEEEEEcC
Confidence 00011 111 111 25667788888888877 456779999874 454 79999984
No 85
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.67 E-value=1e-06 Score=88.65 Aligned_cols=172 Identities=11% Similarity=0.131 Sum_probs=116.1
Q ss_pred CCceecC-hHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCC
Q 047754 79 PDVRIID-PPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKS 157 (330)
Q Consensus 79 p~v~viD-p~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 157 (330)
.|++.|= |+.+|+.+.||...-.+... .++|+=+-..=...+... + .-...+++||+.+|...|+ ++
T Consensus 98 aGlvfIGP~~~aI~aMGdK~~AK~l~~~-------AgVp~VPG~~g~~qd~~~-~-~~~A~eiGyPVlIKAsaGG---GG 165 (645)
T COG4770 98 AGLVFIGPSAGAIRAMGDKIAAKKLAAE-------AGVPTVPGYHGPIQDAAE-L-VAIAEEIGYPVLIKASAGG---GG 165 (645)
T ss_pred CCcEEECCCHHHHHHhccHHHHHHHHHH-------cCCCccCCCCCcccCHHH-H-HHHHHhcCCcEEEEeccCC---CC
Confidence 5888887 56889999999988877775 677654433222222222 2 2234789999999987754 46
Q ss_pred cceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCeE----EEEEee-cCCCcchhhhhccCc
Q 047754 158 HQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSSV----KCVKRK-SLPDISEEKMKSLKG 219 (330)
Q Consensus 158 h~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~v----~~~~R~-S~~~~~~~~~~~~~g 219 (330)
.||-++.+.+++.+. +.-++++.|+.. .|-+-+=|+||+. +.-.|- |+
T Consensus 166 KGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~-PRHIEiQV~aD~HGNvv~LgERdCSl------------- 231 (645)
T COG4770 166 KGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDK-PRHIEIQVFADQHGNVVHLGERDCSL------------- 231 (645)
T ss_pred CceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCC-CceEEEEEEecCCCCEEEeeccccch-------------
Confidence 899999999887642 568999999985 4557777888864 222221 21
Q ss_pred ccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEeeC
Q 047754 220 FLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDINY 287 (330)
Q Consensus 220 ~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEVN~ 287 (330)
+=.+| |+-- ..|+|. +++ .+.|-+-|++++++.|..-+| |-+|++.+ ++ +|++|+|.
T Consensus 232 --QRRhQ-KVIE-----EAPaP~-l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~-~~-f~FlEMNT 291 (645)
T COG4770 232 --QRRHQ-KVIE-----EAPAPF-LTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDAD-GN-FYFLEMNT 291 (645)
T ss_pred --hhhcc-hhhh-----cCCCCC-CCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCC-Cc-EEEEEeec
Confidence 10111 2211 112222 111 457789999999999999999 99999964 43 89999994
No 86
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=4.5e-07 Score=86.33 Aligned_cols=218 Identities=10% Similarity=0.181 Sum_probs=134.1
Q ss_pred ccEEEEccCC------hhHHHHHHHHHHhCCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchh
Q 047754 55 FDCIMHKLYG------PDWTQQLQQFSSRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETEL 128 (330)
Q Consensus 55 ~DvilhK~~~------~~~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~ 128 (330)
.|+||.|-.. +.+...+..+.. .|++.||++.++...+||--...-|.++-.+++...+|.=..... +.-
T Consensus 156 PdfVlirqhA~~mA~~~d~rslvig~qy--agiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~y--PnH 231 (488)
T KOG3895|consen 156 PDFVLIRQHAFSMALNEDYRSLVIGLQY--AGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFY--PNH 231 (488)
T ss_pred CCEEEEcccchhhccccchHHHHHHHHh--cCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeec--CCc
Confidence 4777777543 233444555543 489999999999999999655555555555555555654333322 221
Q ss_pred hhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC-------CCCeEEEecccCCCeEEEEEEECCeEEEE
Q 047754 129 VTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL-------EAPILLQEFVNHGGIIFKVYVAGSSVKCV 201 (330)
Q Consensus 129 ~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~vvQefI~h~g~~~Kv~ViG~~v~~~ 201 (330)
.. .+ ..-.||+|||- ++|- .+-|-..|.|.++|.++ +.-.-+|-||+ .-.|+||=-||..+.++
T Consensus 232 K~---m~--s~~tyPvVVkv--ghah-sGmGKiKV~Nh~dfqDi~svval~~Tyat~epFiD-aKYDiriQKIG~nYKay 302 (488)
T KOG3895|consen 232 KE---ML--SQPTYPVVVKV--GHAH-SGMGKIKVENHEDFQDIASVVALTKTYATAEPFID-AKYDIRIQKIGHNYKAY 302 (488)
T ss_pred hh---hc--cCCCCcEEEEe--cccc-cccceeeecchhhhHhHHHHHHHHhhhhhcccccc-ccceeehhhhhhhHHHH
Confidence 11 12 33469999994 4433 23456677888888764 55677899997 35689999999999999
Q ss_pred EeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCchHHHHHHHHHHHHHhC-CcEEEEEEEEeCCCCCee
Q 047754 202 KRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRALREALG-LNLFNFDLIRDAGERDGY 280 (330)
Q Consensus 202 ~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LG-l~l~GvDvi~~~~~g~~~ 280 (330)
+|.|+- +.|++ |..+. ....+--.++-+.....+.+.+| |++..||.+... +|+.
T Consensus 303 mRtsIs----gnWKt-----------NtGSa-------mLEQIamseRyklwvdtcse~fGgldICav~alhsK-dGrd- 358 (488)
T KOG3895|consen 303 MRTSIS----GNWKT-----------NTGSA-------MLEQIAMSERYKLWVDTCSEMFGGLDICAVKALHSK-DGRD- 358 (488)
T ss_pred hhhhhc----cCccc-----------CchHH-------HHHHHHHHHHHHHHHHHHHHhcCCcceEEeeeeecc-cchh-
Confidence 999974 23554 22111 11000012334455566667664 789999999875 5765
Q ss_pred EEEEeeC--CCCCCCCCC-cHHHHHHHHHHHH
Q 047754 281 LVIDINY--LPGYAKLPG-YETLLMDFFLNVA 309 (330)
Q Consensus 281 ~ViEVN~--fPg~~g~~~-~~~~l~~~i~~~~ 309 (330)
||+|||. .|=+..... -...+.+.+..+.
T Consensus 359 ~i~eV~d~smpliGeh~eeDrql~~~Lvvskm 390 (488)
T KOG3895|consen 359 YIIEVMDSSMPLIGEHQEEDRQLISELVVSKM 390 (488)
T ss_pred heeeeccccccccccchhHHHHHHHHHHHHHh
Confidence 7999997 454544433 2333444444333
No 87
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=98.48 E-value=2.8e-06 Score=80.35 Aligned_cols=100 Identities=19% Similarity=0.268 Sum_probs=36.4
Q ss_pred HhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhc
Q 047754 92 RLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEV 171 (330)
Q Consensus 92 ~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~ 171 (330)
.+..|..+++.+.+........--.+|.|..+..... .........-.--+|+||..+ + .+.|+.++.+.+++.+
T Consensus 18 ~l~~K~~l~~~l~~~~~~~~~~~~~~p~t~~l~~~~~--~~~~~~~~~~~~~wI~KP~~~--~-rG~GI~l~~~~~~i~~ 92 (292)
T PF03133_consen 18 ELTRKDLLAKNLQRYRKKFPKEFDFYPETFILPQDYK--EFLKYFEKNPKNLWIVKPSNG--S-RGRGIKLFNNLEQILR 92 (292)
T ss_dssp EE-----------------------------HHHHHH--HHHHHHHTTS---EEEEES----------EEEES-HHHHHC
T ss_pred hhhhhHHHHHHHHHHHhhcCCcccCCcceEecHHHHH--HHHHHHhcCCCCEEEEecccc--C-CCCCceecCCHHHHHH
Confidence 3455555555554321110001124678777753221 111111122123599999874 4 6789999999999986
Q ss_pred ----CCCCeEEEecccC----CC--eEEEEEEECC
Q 047754 172 ----LEAPILLQEFVNH----GG--IIFKVYVAGS 196 (330)
Q Consensus 172 ----l~~p~vvQefI~h----~g--~~~Kv~ViG~ 196 (330)
...++|||+||+. +| .|+|+||+=-
T Consensus 93 ~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvt 127 (292)
T PF03133_consen 93 FSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVT 127 (292)
T ss_dssp CHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-
T ss_pred HhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEe
Confidence 4679999999985 34 4789888733
No 88
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.44 E-value=1.4e-05 Score=83.22 Aligned_cols=220 Identities=15% Similarity=0.275 Sum_probs=137.9
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCc---------------CCCccEEEE--------ccCCh-------hHH---HHHHHHH
Q 047754 29 LITKATEQGIGLIRIDPDKPLTE---------------QGPFDCIMH--------KLYGP-------DWT---QQLQQFS 75 (330)
Q Consensus 29 l~~~~~~~Gi~~~~id~~~~l~~---------------q~~~Dvilh--------K~~~~-------~~~---~~l~~~~ 75 (330)
.-++|.+.|+.-+.|....+-.. .+|.++.|- |..+. -+. ..+.+-.
T Consensus 22 vFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaIhPGYGfLSEn~efA~~c 101 (1149)
T COG1038 22 VFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAIHPGYGFLSENPEFARAC 101 (1149)
T ss_pred HHHHHHhcCceEEEEeeccccchhhhccccceeeecCCCCchHHhccHHHHHHHHHHcCCCeecCCcccccCCHHHHHHH
Confidence 44789999999999998864221 134444331 00000 001 1222333
Q ss_pred HhCCCceecCh-HHHHHHhcCHHHHHHHHHhhhhhhcCCCccC-CcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCC
Q 047754 76 SRNPDVRIIDP-PESIERLHNRDSMLEVVSRLKIELNKEKVSV-PNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANG 153 (330)
Q Consensus 76 ~~~p~v~viDp-~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~-P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~G 153 (330)
.+ .|+..|-| ++.++.+.||...-.+-.+ .++|+ |.+--. .++.+....+ ..+.+||+++|-.+|+
T Consensus 102 ~e-aGI~FIGP~~e~ld~~GdKv~Ar~~A~~-------agvPvipgt~~~--~~~~ee~~~f-a~~~gyPvmiKA~~GG- 169 (1149)
T COG1038 102 AE-AGITFIGPKPEVLDMLGDKVKARNAAIK-------AGVPVIPGTDGP--IETIEEALEF-AEEYGYPVMIKAAAGG- 169 (1149)
T ss_pred HH-cCCEEeCCCHHHHHHhccHHHHHHHHHH-------cCCCccCCCCCC--cccHHHHHHH-HHhcCCcEEEEEccCC-
Confidence 33 48888875 7889999999987665544 56664 222111 1222222223 3778999999987764
Q ss_pred CCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCeE----EEEEee-cCCCcchhhhh
Q 047754 154 SDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSSV----KCVKRK-SLPDISEEKMK 215 (330)
Q Consensus 154 s~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~v----~~~~R~-S~~~~~~~~~~ 215 (330)
+++||-+|.++++|.+. +..++++.||. +.+-+-|=++||+. +.+.|- |.-
T Consensus 170 --GGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve-~pkHIEVQiLgD~~GnvvHLfERDCSvQ-------- 238 (1149)
T COG1038 170 --GGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVE-NPKHIEVQILGDTHGNVVHLFERDCSVQ-------- 238 (1149)
T ss_pred --CccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhc-CcceeEEEEeecCCCCEEEEeecccchh--------
Confidence 46999999999888652 56899999998 45668899999863 334442 210
Q ss_pred ccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEeeC
Q 047754 216 SLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDINY 287 (330)
Q Consensus 216 ~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEVN~ 287 (330)
=.+| |+- +..|.+ .+.+ ..++.+-|.++++..|.--+| +.++++.+ |+ +|+||||.
T Consensus 239 -------RRhQ-KVV-----E~APa~-~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~-~~-fyFIEvNP 297 (1149)
T COG1038 239 -------RRHQ-KVV-----EVAPAP-YLSPELRDEICDDAVKLARNIGYINAGTVEFLVDED-GK-FYFIEVNP 297 (1149)
T ss_pred -------hccc-eeE-----EecCCC-CCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCC-Cc-EEEEEecC
Confidence 0011 110 011111 1222 456779999999999999999 99999974 44 68999993
No 89
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=98.40 E-value=4.6e-05 Score=74.89 Aligned_cols=233 Identities=17% Similarity=0.293 Sum_probs=146.0
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCCcCCCccEEEEccCChhHHHHHHHHHHhCCCceecChHHHHHH-hcCHHHHHHHHHh
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDPPESIER-LHNRDSMLEVVSR 105 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~~q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp~~ai~~-~~dR~~~~~~L~~ 105 (330)
+.+++.|++.+++++.|-|+.||.. -....|.+ .|+++.=|.....+ =.+|..+-.++.+
T Consensus 53 ~~lv~fA~~~~idl~vVGPE~pL~~-----------------GvvD~l~~--~Gi~vFGPsk~AA~lE~SK~faK~fm~k 113 (428)
T COG0151 53 EALVAFAKEKNVDLVVVGPEAPLVA-----------------GVVDALRA--AGIPVFGPTKAAAQLEGSKAFAKDFMKK 113 (428)
T ss_pred HHHHHHHHHcCCCEEEECCcHHHhh-----------------hhHHHHHH--CCCceeCcCHHHHHHHhhHHHHHHHHHH
Confidence 6789999999999999999877663 22223333 38999998765544 4688888888886
Q ss_pred hhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC-------------
Q 047754 106 LKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL------------- 172 (330)
Q Consensus 106 ~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------------- 172 (330)
++||++.+-++++.+.+.. .+ ...+.|+|+|| +|-..+-|+.|+.+.++..+.
T Consensus 114 -------~~IPta~y~~f~~~e~a~a--yi--~~~g~piVVKa---dGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~ 179 (428)
T COG0151 114 -------YGIPTAEYEVFTDPEEAKA--YI--DEKGAPIVVKA---DGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSA 179 (428)
T ss_pred -------cCCCcccccccCCHHHHHH--HH--HHcCCCEEEec---ccccCCCCeEEcCCHHHHHHHHHHHHhhccccCC
Confidence 8999999999997766653 45 67899999995 455567899999998665431
Q ss_pred CCCeEEEecccCCCeEEE--EEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCC-Cc---
Q 047754 173 EAPILLQEFVNHGGIIFK--VYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEM-PR--- 246 (330)
Q Consensus 173 ~~p~vvQefI~h~g~~~K--v~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~-~~--- 246 (330)
...+|++||+. |..+. ++|=|+++.- +|-.+ +.++ -|+.=.-...|+= |.-++... ++
T Consensus 180 g~~VVIEEfL~--GeE~S~~a~~DG~~v~p-----~p~aQ--DhKr-----a~dgD~GPNTGGM--Gaysp~P~~t~e~~ 243 (428)
T COG0151 180 GARVVIEEFLD--GEEFSLQAFVDGKTVIP-----MPTAQ--DHKR-----AYDGDTGPNTGGM--GAYSPAPFITDEVV 243 (428)
T ss_pred CCcEEEEeccc--ceEEEEEEEEcCCeEEE-----Ccccc--cccc-----ccCCCCCCCCCCC--CCCCCCCCCCHHHH
Confidence 14599999995 66664 5566777731 22110 1111 0100000111100 11122111 11
Q ss_pred ----hHHHHHHHHHHHHHhCCcEEEE---EEEEeCCCCCeeEEEEeeCCCCCCCC----CCcHHHHHHHHHHHHHhc
Q 047754 247 ----EGFVVELSRALREALGLNLFNF---DLIRDAGERDGYLVIDINYLPGYAKL----PGYETLLMDFFLNVAKSK 312 (330)
Q Consensus 247 ----~~~~~~lA~~~~~~LGl~l~Gv---Dvi~~~~~g~~~~ViEVN~fPg~~g~----~~~~~~l~~~i~~~~~~~ 312 (330)
++.++..+..+++. |..+-|| =++++. +| ++|||.|.=.|==.. |...+.|.+.+...+..+
T Consensus 244 ~~~~~~Iv~ptv~gm~~E-G~~f~GvLy~glMlt~-~G--PkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~~g~ 316 (428)
T COG0151 244 ERAVEEIVEPTVEGMAKE-GYPFRGVLYAGLMLTA-DG--PKVIEFNARFGDPETQVVLPLLESDLVELLLAAVDGK 316 (428)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCceEEEEeEEEEcC-CC--cEEEEEecccCChhHHHHHHhccccHHHHHHHHHhCC
Confidence 23445556666666 7777773 345553 34 589999987772222 446677888777776553
No 90
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=98.24 E-value=7.9e-05 Score=66.74 Aligned_cols=89 Identities=15% Similarity=0.266 Sum_probs=61.1
Q ss_pred CHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcE-EEeeCCCCCCCCCcceEEEeChhhhhc--
Q 047754 95 NRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPL-IAKPLEANGSDKSHQMYLIFDNEGLEV-- 171 (330)
Q Consensus 95 dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~-VvKp~~a~Gs~~sh~m~iv~~~~~L~~-- 171 (330)
+|..+-+++.+ ++||++++.++.+.+.+.. .+ ....+|+ |+|+ +|...+.|+.|+.+.++..+
T Consensus 2 SK~faK~fm~~-------~~IPTa~~~~f~~~~~A~~--~l--~~~~~p~~ViKa---dGla~GKGV~i~~~~~eA~~~l 67 (194)
T PF01071_consen 2 SKSFAKEFMKR-------YGIPTAKYKVFTDYEEALE--YL--EEQGYPYVVIKA---DGLAAGKGVVIADDREEALEAL 67 (194)
T ss_dssp BHHHHHHHHHH-------TT-SB--EEEESSHHHHHH--HH--HHHSSSEEEEEE---SSSCTTTSEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHH-------cCCCCCCeeEECCHHHHHH--HH--HhcCCCceEEcc---CCCCCCCEEEEeCCHHHHHHHH
Confidence 57777778876 8999999999998877654 45 4567888 9995 45557789999999854432
Q ss_pred --C---------CCCeEEEecccCCCeEEEEEEE--CCeEE
Q 047754 172 --L---------EAPILLQEFVNHGGIIFKVYVA--GSSVK 199 (330)
Q Consensus 172 --l---------~~p~vvQefI~h~g~~~Kv~Vi--G~~v~ 199 (330)
+ ..++++|||+ .|..+.++++ |+++.
T Consensus 68 ~~~~~~~~fg~~~~~vvIEE~l--~G~E~S~~a~~dG~~~~ 106 (194)
T PF01071_consen 68 REIFVDRKFGDAGSKVVIEEFL--EGEEVSLFALTDGKNFV 106 (194)
T ss_dssp HHHHTSSTTCCCGSSEEEEE-----SEEEEEEEEEESSEEE
T ss_pred HHhccccccCCCCCcEEEEecc--CCeEEEEEEEEcCCeEE
Confidence 1 3589999999 6888876554 66554
No 91
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.15 E-value=0.00013 Score=74.86 Aligned_cols=170 Identities=15% Similarity=0.254 Sum_probs=110.9
Q ss_pred CCceecC-hHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE--EecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCC
Q 047754 79 PDVRIID-PPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQA--VVSETELVTRDMAIEELKLRFPLIAKPLEANGSD 155 (330)
Q Consensus 79 p~v~viD-p~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~ 155 (330)
.|+..|- |++.++.+.||...-.+--+ +|+|+-+.. .++..+.+. .. ....+||+|.|-..|+
T Consensus 130 AGi~fiGPspeVi~~mGDKv~AR~~Ai~-------agVpvVPGTpgPitt~~EA~---eF-~k~yG~PvI~KAAyGG--- 195 (1176)
T KOG0369|consen 130 AGIRFIGPSPEVIDSMGDKVAARAIAIE-------AGVPVVPGTPGPITTVEEAL---EF-VKEYGLPVIIKAAYGG--- 195 (1176)
T ss_pred cCceEeCCCHHHHHHhhhHHHHHHHHHH-------cCCCccCCCCCCcccHHHHH---HH-HHhcCCcEEEeecccC---
Confidence 4888887 57889999999887665544 566542211 112222221 12 2678999999976643
Q ss_pred CCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCeE----EEEEee-cCCCcchhhhhcc
Q 047754 156 KSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSSV----KCVKRK-SLPDISEEKMKSL 217 (330)
Q Consensus 156 ~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~v----~~~~R~-S~~~~~~~~~~~~ 217 (330)
+++||.+|..-+++++. +--+.++.|++. .+-+-|-.+||+. +.+.|- |.-
T Consensus 196 GGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ek-PrHIEvQllgD~~GNvvHLyERDCSvQ---------- 264 (1176)
T KOG0369|consen 196 GGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEK-PRHIEVQLLGDKHGNVVHLYERDCSVQ---------- 264 (1176)
T ss_pred CCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcC-cceeEEEEecccCCCEEEEeecccchh----------
Confidence 57999999998777641 457999999986 4558888888864 334332 110
Q ss_pred CcccccCCcccCCCCCccccccccC-CCCc--hHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEeeCC
Q 047754 218 KGFLPFSQISSNSVDADEEVDLEKT-EMPR--EGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDINYL 288 (330)
Q Consensus 218 ~g~~~f~~~s~~~~~~~~~~~~~~~-~~~~--~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEVN~f 288 (330)
=.++ |+ -...++ .+|+ .+.+-.-|.++++..|..-+| +.++++. .|+ +|+||||.=
T Consensus 265 -----RRHQ-KV-------VEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~-~g~-hYFIEvN~R 324 (1176)
T KOG0369|consen 265 -----RRHQ-KV-------VEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQ-KGR-HYFIEVNPR 324 (1176)
T ss_pred -----hhhc-ce-------eEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEcc-CCC-EEEEEecCc
Confidence 0001 11 001121 2333 456668899999999999999 9999996 565 589999953
No 92
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=97.90 E-value=4.9e-05 Score=80.35 Aligned_cols=176 Identities=19% Similarity=0.346 Sum_probs=119.7
Q ss_pred CceecC-hHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCC-CCCCCC
Q 047754 80 DVRIID-PPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEA-NGSDKS 157 (330)
Q Consensus 80 ~v~viD-p~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a-~Gs~~s 157 (330)
++.++- +|+.|+..-||+...+.|.+ .+|..|.+-.+++-+.+.. . ...++||+++.|.-- +|+
T Consensus 1017 ~~kilGTsP~~ID~AEnR~kFS~~Ld~-------i~v~Qp~Wkelt~~~eA~~---F-~~~VgYP~lvRPSYVLSGa--- 1082 (1435)
T KOG0370|consen 1017 GVKILGTSPEMIDSAENRFKFSRMLDS-------IGVDQPAWKELTSLEEAKK---F-AEKVGYPVLVRPSYVLSGA--- 1082 (1435)
T ss_pred CCeEecCChHhhhhhhhHHHHHHHHHH-------cCCCchhhhhhccHHHHHH---H-HHhcCCceEecccceecch---
Confidence 566664 78999999999999999997 6999999998888766643 2 377999999999743 233
Q ss_pred cceEEEeChhhhhcC---------CCCeEEEecccCCCeEEEEEEEC--CeEEEEEeecC--CCcchhhhhccCcccccC
Q 047754 158 HQMYLIFDNEGLEVL---------EAPILLQEFVNHGGIIFKVYVAG--SSVKCVKRKSL--PDISEEKMKSLKGFLPFS 224 (330)
Q Consensus 158 h~m~iv~~~~~L~~l---------~~p~vvQefI~h~g~~~Kv~ViG--~~v~~~~R~S~--~~~~~~~~~~~~g~~~f~ 224 (330)
.|-+++++++|+.+ +.|+++-.||+ +++.+-+=.++ +++.+ +-.|- .|.
T Consensus 1083 -AMnv~~~~~dl~~~L~~A~~vs~dhPVVisKfie-~AkEidvDAVa~~G~~~~-haiSEHvEnA--------------- 1144 (1435)
T KOG0370|consen 1083 -AMNVVYSESDLKSYLEQASAVSPDHPVVISKFIE-GAKEIDVDAVASDGKVLV-HAISEHVENA--------------- 1144 (1435)
T ss_pred -hhhhhhcHHHHHHHHHHHhhcCCCCCEEhHHhhc-ccceechhhhccCCeEEE-Eehhhhhhcc---------------
Confidence 89999999999863 57999999998 46666443332 22221 11111 110
Q ss_pred CcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeC-----CCCCCCC
Q 047754 225 QISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINY-----LPGYAKL 294 (330)
Q Consensus 225 ~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~-----fPg~~g~ 294 (330)
-+++|..... ..+..+.+ -+.+++++.+++++|..+ =|++-+|..+ +.+.|||.|. ||=..+.
T Consensus 1145 ---GVHSGDAtlv-~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k~---n~lkVIECN~RaSRSFPFvSKt 1215 (1435)
T KOG0370|consen 1145 ---GVHSGDATLV-LPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAKD---NELKVIECNVRASRSFPFVSKT 1215 (1435)
T ss_pred ---cccCCceeEe-CCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEecC---CeEEEEEeeeeeeccccceehh
Confidence 1223211000 01111211 467899999999999998 6789999763 3589999994 6654444
No 93
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=97.52 E-value=0.00039 Score=68.62 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=64.9
Q ss_pred HHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCC-CcEEEeeCCCC-CCCCCcceEEEeChhhhhcC--
Q 047754 97 DSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLR-FPLIAKPLEAN-GSDKSHQMYLIFDNEGLEVL-- 172 (330)
Q Consensus 97 ~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a~-Gs~~sh~m~iv~~~~~L~~l-- 172 (330)
+.+.++|++ +|||+|++.++.+.++... .. ..++ ||+|+||..-. |...+.|+.++.+.+++.+.
T Consensus 6 ~~aK~ll~~-------~GIpvp~~~~~~~~~ea~~--~~--~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~ 74 (386)
T TIGR01016 6 YQAKQIFAK-------YGIPVPRGYVATSVEEAEE--IA--AKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAE 74 (386)
T ss_pred HHHHHHHHH-------cCCCCCCceeeCCHHHHHH--HH--HHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHH
Confidence 445566765 8999999999987665432 22 5688 99999998321 33345689999998776541
Q ss_pred ---C---------------CCeEEEecccCCCeEEEEEEECCeE
Q 047754 173 ---E---------------APILLQEFVNHGGIIFKVYVAGSSV 198 (330)
Q Consensus 173 ---~---------------~p~vvQefI~h~g~~~Kv~ViG~~v 198 (330)
. ..+++|+|+++ |+.+-+.+++|+.
T Consensus 75 ~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~-g~E~~v~i~~d~~ 117 (386)
T TIGR01016 75 KLLGKELVTNQTDPLGQPVNKILIEEATDI-DKEYYLSIVIDRS 117 (386)
T ss_pred HHhccceeecccCCCCCEeeEEEEEECccC-CceEEEEEEEcCC
Confidence 1 25999999964 8899888988863
No 94
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=97.37 E-value=0.00066 Score=67.04 Aligned_cols=93 Identities=16% Similarity=0.120 Sum_probs=67.9
Q ss_pred CHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcC-CCcEEEeeCCC-CCCCCCcceEEEeChhhhhcC
Q 047754 95 NRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKL-RFPLIAKPLEA-NGSDKSHQMYLIFDNEGLEVL 172 (330)
Q Consensus 95 dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l-~fP~VvKp~~a-~Gs~~sh~m~iv~~~~~L~~l 172 (330)
+.+.+.++|.. +|||+|++.++.+.++... .. ..+ +||+|+||... .|.+.+.++.+..+++++.+.
T Consensus 4 ~e~~ak~lL~~-------~gIpvp~~~~~~~~~ea~~--~a--~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a 72 (388)
T PRK00696 4 HEYQAKELFAK-------YGVPVPRGIVATTPEEAVE--AA--EELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREF 72 (388)
T ss_pred CHHHHHHHHHH-------cCCCCCCCeeeCCHHHHHH--HH--HHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHH
Confidence 44566677775 8999999999998876543 22 457 99999999742 234466799999888777541
Q ss_pred ------C---------C-----CeEEEecccCCCeEEEEEEECCeEE
Q 047754 173 ------E---------A-----PILLQEFVNHGGIIFKVYVAGSSVK 199 (330)
Q Consensus 173 ------~---------~-----p~vvQefI~h~g~~~Kv~ViG~~v~ 199 (330)
+ . .+++|+|+++ |..+-+.+..|..+
T Consensus 73 ~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~-~~E~~vg~~~D~~f 118 (388)
T PRK00696 73 AKQILGMTLVTHQTGPKGQPVNKVLVEEGADI-AKEYYLSIVLDRAT 118 (388)
T ss_pred HHHhhccceeeeccCCCCCEEeEEEEEeccCC-CceEEEEEEEcCCC
Confidence 1 1 3899999964 78888888877643
No 95
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0014 Score=65.87 Aligned_cols=64 Identities=28% Similarity=0.328 Sum_probs=43.3
Q ss_pred CcEEEEEEEEeCCCCCeeEEEEeeCCCCCCCC-CC---cHHHHHHHHHHHHHhccc--cccCCccccccccc
Q 047754 263 LNLFNFDLIRDAGERDGYLVIDINYLPGYAKL-PG---YETLLMDFFLNVAKSKAV--EEVTSGDELNESVC 328 (330)
Q Consensus 263 l~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~-~~---~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~ 328 (330)
-.|||||+++|+.- + .+++|||-.|+...- |- ....|+..+.++..=+.- .+.-++.++++|-|
T Consensus 476 fELfgFDiilDedL-k-pwLlEVNISPSLhS~tpld~~vk~~li~~vlNlagi~~p~~~s~~~~a~~~~st~ 545 (662)
T KOG2156|consen 476 FELFGFDIILDEDL-K-PWLLEVNISPSLHSETPLDCSVKAPLIQDVLNLAGIKVPPKPSTDSLAELSLSTK 545 (662)
T ss_pred hhhhcceEEecCcc-c-eeeEEEecccccccCCCccchhhhHHHHHHHHhcceecCCCccchhhhhhCCCcc
Confidence 57899999999743 3 699999999997554 32 445566666655533333 34445677777765
No 96
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.10 E-value=0.051 Score=50.31 Aligned_cols=182 Identities=16% Similarity=0.191 Sum_probs=101.1
Q ss_pred ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCc-hhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEE
Q 047754 85 DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSET-ELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLI 163 (330)
Q Consensus 85 Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~-~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv 163 (330)
|.-.-...|.||+..-+-+++. ......|+..-+.+. ++.. -..|.-++|+||..|||+ ..++.-
T Consensus 10 ~~~~~~~~~~DK~~VR~yv~~~-----~g~~~l~pll~v~~~~~~i~------~~~Lp~~fViK~nhgsg~---~~i~~d 75 (239)
T PF14305_consen 10 DRNPLFTKLADKYAVREYVEEK-----IGEEYLPPLLGVYDNPDDID------FDSLPDKFVIKPNHGSGS---NIIVRD 75 (239)
T ss_pred CCCccceecchHHHHHHHHHHh-----CCCceECceeecCCChhhhh------hhcCCCCEEEEEecCCCc---EEEEeC
Confidence 4445566788999888888752 123355555544433 3322 255778999999886543 333332
Q ss_pred eCh---hh----hhc-----------------CCCCeEEEecccCC-C---eEEEEEEECCeEEEEEeecC--CCcchhh
Q 047754 164 FDN---EG----LEV-----------------LEAPILLQEFVNHG-G---IIFKVYVAGSSVKCVKRKSL--PDISEEK 213 (330)
Q Consensus 164 ~~~---~~----L~~-----------------l~~p~vvQefI~h~-g---~~~Kv~ViG~~v~~~~R~S~--~~~~~~~ 213 (330)
.+. +. +.. +.+-+++++|+... | .|||+||.++++....--+- ++-..+-
T Consensus 76 k~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~~~~~~~~ 155 (239)
T PF14305_consen 76 KSKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRFGNHKRNF 155 (239)
T ss_pred CcccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCCCCeEEEE
Confidence 221 11 111 13469999999985 3 69999999997654332211 1100000
Q ss_pred hhccCcccccCCcccCCCCCccccccccCCCCc-hHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeeEEEEeeCCCCCC
Q 047754 214 MKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR-EGFVVELSRALREALGLNLFNFDLIRDAGERDGYLVIDINYLPGYA 292 (330)
Q Consensus 214 ~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~lA~~~~~~LGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~ 292 (330)
+...-....|.. +.+. ....+.|. -++|-++|.++++- ..+.-||+-..+ + .+|+=|+=.+||=.
T Consensus 156 yd~dw~~l~~~~--~~~~-------~~~~~kP~~l~emi~iA~~Ls~~--f~fvRVDlY~~~--~-~iyFGElTf~p~~G 221 (239)
T PF14305_consen 156 YDRDWNRLPFRS--DYPP-------DEDIPKPKNLEEMIEIAEKLSKG--FPFVRVDLYNVD--G-KIYFGELTFTPGAG 221 (239)
T ss_pred ECcccCCCcccc--CCCC-------CCCCCCChhHHHHHHHHHHHccC--CCEEEEEEEEeC--C-cEEEEeeecCCCCc
Confidence 000000011211 1211 01111121 35677888888886 557789999764 3 48999999999855
Q ss_pred CC
Q 047754 293 KL 294 (330)
Q Consensus 293 g~ 294 (330)
-.
T Consensus 222 ~~ 223 (239)
T PF14305_consen 222 FE 223 (239)
T ss_pred CC
Confidence 33
No 97
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=96.96 E-value=0.011 Score=65.57 Aligned_cols=211 Identities=15% Similarity=0.149 Sum_probs=122.8
Q ss_pred cCCCccEEEEccCChhHHHHHHHHHHhCCCceecChH-HHHHHhcCHHHHHHHHHhhhhhh---cCCCccCCcEEE----
Q 047754 51 EQGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDPP-ESIERLHNRDSMLEVVSRLKIEL---NKEKVSVPNQAV---- 122 (330)
Q Consensus 51 ~q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp~-~ai~~~~dR~~~~~~L~~~~~~~---~~~~i~~P~~~~---- 122 (330)
++-++|++.--.....---.|-+.+..+ +++.|-|| .++..+.||..+.-+-+.+..+. .+.+|.++...-
T Consensus 134 e~~~VdAVWaGWGHASENP~LPe~L~~~-~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~ 212 (2196)
T KOG0368|consen 134 ERTDVDAVWAGWGHASENPELPERLSAN-GIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNL 212 (2196)
T ss_pred HhcccceEeecccccccCcchHHHHHhc-CcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecccCCe
Confidence 3455666664433210001233445454 68999866 46778899988765554433221 223344443320
Q ss_pred ecCchh----------hhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC---------CCCeEEEeccc
Q 047754 123 VSETEL----------VTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL---------EAPILLQEFVN 183 (330)
Q Consensus 123 ~~~~~~----------~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~vvQefI~ 183 (330)
+.-+++ .+-+.+. ..+|||+.+|-..|+ ++.|+-.+.+.++++.+ ..|+.+-.-..
T Consensus 213 v~Vpedly~Kacv~~~eegLeaa--e~IGfPvMIKASEGG---GGKGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~ 287 (2196)
T KOG0368|consen 213 VSVPEDLYEKACVRNVEEGLEAA--EKIGFPVMIKASEGG---GGKGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLAD 287 (2196)
T ss_pred EecCHHHhhhhhcCCHHHHHHHH--HhcCCceEEEeccCC---CCcceeeccchHHHHHHHHHHHhhCCCCceeeeeccc
Confidence 111111 1112223 569999999988765 45799999999999875 45888777775
Q ss_pred CCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCc---hHHHHHHHHHHHHH
Q 047754 184 HGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR---EGFVVELSRALREA 260 (330)
Q Consensus 184 h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~lA~~~~~~ 260 (330)
++|-+-|=.++|++--+.--...+-+ ..=..| |+-. ..|+.+-+ -+.|++-|.++++.
T Consensus 288 -~ARHlEVQlLaDqYGn~IsLfgRDCS----------iQRRhQ-KIIE-------EAPatIap~etf~~Me~~AvrLak~ 348 (2196)
T KOG0368|consen 288 -QARHLEVQLLADQYGNVISLFGRDCS----------IQRRHQ-KIIE-------EAPATIAPPETFKKMEQAAVRLAKL 348 (2196)
T ss_pred -CcceeeeehhhhhcCCEeEeecccch----------HHHHHH-HHHh-------hCCcccCCHHHHHHHHHHHHHHHHh
Confidence 46777787888776211100011100 000001 1110 11222112 46789999999999
Q ss_pred hCCcEEE-EEEEEeCCCCCeeEEEEeeC
Q 047754 261 LGLNLFN-FDLIRDAGERDGYLVIDINY 287 (330)
Q Consensus 261 LGl~l~G-vDvi~~~~~g~~~~ViEVN~ 287 (330)
.|--=+| |..+....+| +||++|.|.
T Consensus 349 VGYvSAGTVEYLYsp~d~-~fyFLELNP 375 (2196)
T KOG0368|consen 349 VGYVSAGTVEYLYSPDDG-EYYFLELNP 375 (2196)
T ss_pred hcceecceEEEEEecCCC-cEEEEecCc
Confidence 9999999 9999886666 599999994
No 98
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=96.47 E-value=0.018 Score=57.84 Aligned_cols=148 Identities=20% Similarity=0.276 Sum_probs=92.3
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCCcC--------CCccEEEEccCChhHH-------HHHHHHHHhCCCceecChHHHHH
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLTEQ--------GPFDCIMHKLYGPDWT-------QQLQQFSSRNPDVRIIDPPESIE 91 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~~q--------~~~DvilhK~~~~~~~-------~~l~~~~~~~p~v~viDp~~ai~ 91 (330)
+.|.+..+++|++.+..|++ .+..+ .+.|+|.=|+.+...+ ..++.|... .+++++|+ +..
T Consensus 203 ~~f~~~f~~~G~~~vI~d~~-~L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~~~--av~~vgsf-rs~ 278 (445)
T PF14403_consen 203 EVFQRLFEEHGYDCVICDPR-DLEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYRDG--AVCMVGSF-RSQ 278 (445)
T ss_pred HHHHHHHHHcCCceEecChH-HceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHhcC--CeEEecch-hhh
Confidence 67899999999999999999 44332 2789999887654322 234455443 69999998 567
Q ss_pred HhcCHHHHHHHHHhhhh---h-hcC--CCccCCcEEEecCc------hhhhhhH-HHHHhcCCCcEEEeeCCCCCCCCCc
Q 047754 92 RLHNRDSMLEVVSRLKI---E-LNK--EKVSVPNQAVVSET------ELVTRDM-AIEELKLRFPLIAKPLEANGSDKSH 158 (330)
Q Consensus 92 ~~~dR~~~~~~L~~~~~---~-~~~--~~i~~P~~~~~~~~------~~~~~~~-~l~~~~l~fP~VvKp~~a~Gs~~sh 158 (330)
.++||..+.-+-..... + +.+ -.=.+|-|..++.. +...... .+.+.. -+|+||..+- +||
T Consensus 279 l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a~r~---~lVLKP~D~Y---gg~ 352 (445)
T PF14403_consen 279 LLHNKIIFAILHDERTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVDLVEFAIANRD---RLVLKPNDEY---GGK 352 (445)
T ss_pred hhhhhHHHHHhcChhhcccCCHHHHHHHHHhCCceEEEcCccccccccchhHHHHHHhchh---cEEecccccc---CCC
Confidence 88999665432221110 0 000 12347889888872 1111111 222222 4999998865 458
Q ss_pred ceEEEeC--h----hhhhc-CCCCeEEEecccC
Q 047754 159 QMYLIFD--N----EGLEV-LEAPILLQEFVNH 184 (330)
Q Consensus 159 ~m~iv~~--~----~~L~~-l~~p~vvQefI~h 184 (330)
|+++=-. . +.|.+ ++.|+|+|||+.-
T Consensus 353 GV~~G~e~~~eeW~~~l~~a~~~~yilQe~v~~ 385 (445)
T PF14403_consen 353 GVYIGWETSPEEWEAALEEAAREPYILQEYVRP 385 (445)
T ss_pred CeEECCcCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 8877444 2 33333 4779999999975
No 99
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=96.24 E-value=0.0063 Score=55.75 Aligned_cols=93 Identities=20% Similarity=0.252 Sum_probs=51.6
Q ss_pred cCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCC---CCCCCcceEE-EeChhhh
Q 047754 94 HNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEAN---GSDKSHQMYL-IFDNEGL 169 (330)
Q Consensus 94 ~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~---Gs~~sh~m~i-v~~~~~L 169 (330)
++-..+.++|+. +||++|++.++.+.++... . ...++||+++|-..++ =| ...++.+ +.+++++
T Consensus 10 L~e~e~~~lL~~-------yGI~~~~~~~~~~~~ea~~--~--a~~ig~PvvlKi~sp~i~HKs-d~GgV~L~l~~~~~v 77 (222)
T PF13549_consen 10 LTEAEAKELLAA-------YGIPVPPTRLVTSAEEAVA--A--AEEIGFPVVLKIVSPDIAHKS-DVGGVRLNLNSPEEV 77 (222)
T ss_dssp E-HHHHHHHHHT-------TT------EEESSHHHHHH--H--HHHH-SSEEEEEE-TT---HH-HHT-EEEEE-SHHHH
T ss_pred cCHHHHHHHHHH-------cCcCCCCeeEeCCHHHHHH--H--HHHhCCCEEEEEecCCCCcCC-CCCcEEECCCCHHHH
Confidence 445567778875 8999999999999877653 2 2678999999977543 22 2345666 6677766
Q ss_pred hcC----------------CCCeEEEecccCCCeEEEEEEECCeE
Q 047754 170 EVL----------------EAPILLQEFVNHGGIIFKVYVAGSSV 198 (330)
Q Consensus 170 ~~l----------------~~p~vvQefI~h~g~~~Kv~ViG~~v 198 (330)
+.. -..+++|+.++++|..+-|.+.-|-.
T Consensus 78 ~~a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~ 122 (222)
T PF13549_consen 78 REAFERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQ 122 (222)
T ss_dssp HHHHHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEECCC
Confidence 541 12599999998778888777766643
No 100
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=96.06 E-value=0.24 Score=41.53 Aligned_cols=109 Identities=18% Similarity=0.200 Sum_probs=66.4
Q ss_pred cEEEeeCCCCCCCCCcceEEEeChhhhhcC-----CCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhcc
Q 047754 143 PLIAKPLEANGSDKSHQMYLIFDNEGLEVL-----EAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSL 217 (330)
Q Consensus 143 P~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~ 217 (330)
|+-+||.... ..-.=.++...+.|... +.++++.|.++ =..+||+||+.++++..-+-.- + .
T Consensus 3 ~~FiKP~~~~---K~F~g~V~~~~~dl~~~~~~~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~s~Y~~-~-----~--- 69 (130)
T PF14243_consen 3 PVFIKPPDDD---KSFTGRVFRSGEDLIGFGSLDPDTPVLVSEVVE-IESEWRCFIVDGEVVTGSPYRG-D-----W--- 69 (130)
T ss_pred CeEeCCCCCC---CcceeEEEcchhhccccCCCCCCceEEEeceEe-eeeeEEEEEECCEEEEEeecCC-C-----c---
Confidence 7889988732 22222233435555432 57999999997 4779999999999986543310 0 0
Q ss_pred CcccccCCcccCCCCCccccccccCCCCchHHHHHHHHHHHH-HhCCcEEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 218 KGFLPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRALRE-ALGLNLFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 218 ~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~-~LGl~l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
. .. +..+.+......+.+ .-.-.-|.+||-+.. +|. .+|||+|.+=+
T Consensus 70 ----------------------~-~~-~~~~~~~~~~~~~~~~~~~p~~~vlDvg~~~-~G~-~~lVE~N~~~~ 117 (130)
T PF14243_consen 70 ----------------------D-LE-PDPDVVAFAIQALAAAWTLPPAYVLDVGVTD-DGG-WALVEANDGWS 117 (130)
T ss_pred ----------------------c-cC-CCHHHHHHHHHHHHhcccCCCeEEEEEEEeC-CCC-EEEEEecCccc
Confidence 0 00 112333333333332 445668889999885 553 79999997654
No 101
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=94.43 E-value=0.19 Score=49.88 Aligned_cols=88 Identities=11% Similarity=-0.015 Sum_probs=61.2
Q ss_pred HHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCc-EEEeeCC-CCCCCCCcceEEEeChhhhhcC---
Q 047754 98 SMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFP-LIAKPLE-ANGSDKSHQMYLIFDNEGLEVL--- 172 (330)
Q Consensus 98 ~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP-~VvKp~~-a~Gs~~sh~m~iv~~~~~L~~l--- 172 (330)
...++|+. +|||+|++.++.+.++... .. ..++|| +|+|... ..|-..+.++.+..+.+++...
T Consensus 7 eak~lL~~-------yGIpvp~~~~~~~~~ea~~--~a--~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ 75 (392)
T PRK14046 7 QAKELLAS-------FGVAVPRGALAYSPEQAVY--RA--RELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAED 75 (392)
T ss_pred HHHHHHHH-------cCCCCCCceEECCHHHHHH--HH--HHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHH
Confidence 34466664 8999999999998877653 33 568995 5999754 2344567789988888777542
Q ss_pred --C---------------CCeEEEecccCCCeEEEEEEECCe
Q 047754 173 --E---------------APILLQEFVNHGGIIFKVYVAGSS 197 (330)
Q Consensus 173 --~---------------~p~vvQefI~h~g~~~Kv~ViG~~ 197 (330)
. .-+++|+++++ ++.|-+-+.-|.
T Consensus 76 ll~~~~~~~~~~~~g~~v~~vlVe~~~~~-~~E~ylgi~~D~ 116 (392)
T PRK14046 76 LLGKKLVTHQTGPEGKPVQRVYVETADPI-ERELYLGFVLDR 116 (392)
T ss_pred HhcchhhhhccCCCCCeeeeEEEEEecCC-CcEEEEEEEECC
Confidence 1 13899999985 556665555444
No 102
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=94.41 E-value=1.4 Score=45.63 Aligned_cols=137 Identities=15% Similarity=0.269 Sum_probs=94.6
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCCcCCCccEEEEccCChhHHHHHHHHHHhCCCceecChHH-HHHHhcCHHHHHHHHHh
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDPPE-SIERLHNRDSMLEVVSR 105 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~~q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp~~-ai~~~~dR~~~~~~L~~ 105 (330)
..+...|+++.|.++.+-|+.||..- ....+++ -|+++.-|.. +.+.=.+|..+-..+.+
T Consensus 58 ~ala~f~~e~~I~lVvvGPE~PL~~G--------------l~~~l~~-----~gi~~FGPs~~aAqlE~sK~fsK~fm~r 118 (788)
T KOG0237|consen 58 EALASFCKEHNINLVVVGPELPLVAG--------------LADVLRS-----AGIPCFGPSKQAAQLEASKNFSKDFMHR 118 (788)
T ss_pred HHHHHHHHHcceeEEEECCchhhhhh--------------hhhhhhc-----cCcceeCchHHHHHhhhhHHHHHHHHHh
Confidence 56788999999999999999887631 0111211 3688887764 34444566666666664
Q ss_pred hhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhh-hhcC------------
Q 047754 106 LKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEG-LEVL------------ 172 (330)
Q Consensus 106 ~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~-L~~l------------ 172 (330)
++|||-++..+.+++.+.. .+ +..--+++|+| |+|-+-+.|+.|..+.++ ++++
T Consensus 119 -------~~IPTA~y~~ft~~e~a~s--fi-~~~~~~~~ViK---AdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~A 185 (788)
T KOG0237|consen 119 -------HNIPTAKYKTFTDPEEAKS--FI-QSATDKALVIK---ADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSA 185 (788)
T ss_pred -------cCCCcceeeeeCCHHHHHH--HH-HhCCCcceEEe---ecccccCCceEeeccHHHHHHHHHHHHhhhhhccc
Confidence 8999999999998866653 23 23334789999 788878899999988643 3321
Q ss_pred CCCeEEEecccCCCeEEEEEEECCe
Q 047754 173 EAPILLQEFVNHGGIIFKVYVAGSS 197 (330)
Q Consensus 173 ~~p~vvQefI~h~g~~~Kv~ViG~~ 197 (330)
..-++++||.+ |-+..++..=|-
T Consensus 186 G~tvViEE~LE--GeEvS~laftDG 208 (788)
T KOG0237|consen 186 GKTVVIEELLE--GEEVSFLAFTDG 208 (788)
T ss_pred cceEehhhhcC--cceEEEEEEecC
Confidence 35799999995 666655554443
No 103
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=94.01 E-value=0.42 Score=43.13 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=50.8
Q ss_pred HHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCC-cEEEeeCCCC-CCCCCcceEEEeChhhhhcC---
Q 047754 98 SMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRF-PLIAKPLEAN-GSDKSHQMYLIFDNEGLEVL--- 172 (330)
Q Consensus 98 ~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~f-P~VvKp~~a~-Gs~~sh~m~iv~~~~~L~~l--- 172 (330)
..-++|.+ +||++|+..++.+++.+.. .. ..++. ++|+|+..-. |-..+-|+-++.++++....
T Consensus 6 qaK~ll~~-------~gi~vp~g~~a~s~eea~~--~~--~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~ 74 (202)
T PF08442_consen 6 QAKELLRK-------YGIPVPRGVVATSPEEARE--AA--KELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKE 74 (202)
T ss_dssp HHHHHHHC-------TT----SEEEESSHHHHHH--HH--HHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHT
T ss_pred HHHHHHHH-------cCCCCCCeeecCCHHHHHH--HH--HHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHH
Confidence 34456664 8999999999999887764 23 33454 6899997543 44445678899998777642
Q ss_pred --C---------------CCeEEEecccCCCeEEEEEEE
Q 047754 173 --E---------------APILLQEFVNHGGIIFKVYVA 194 (330)
Q Consensus 173 --~---------------~p~vvQefI~h~g~~~Kv~Vi 194 (330)
. .-++++|+++|..-.|=.+.+
T Consensus 75 mlg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~ 113 (202)
T PF08442_consen 75 MLGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITL 113 (202)
T ss_dssp TTTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEE
T ss_pred HhCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEe
Confidence 1 147999999986555533333
No 104
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=0.2 Score=51.15 Aligned_cols=56 Identities=18% Similarity=0.376 Sum_probs=42.4
Q ss_pred cCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC------------CCCeEEEecccC----CC--eEEEEEEECCe
Q 047754 139 KLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL------------EAPILLQEFVNH----GG--IIFKVYVAGSS 197 (330)
Q Consensus 139 ~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------------~~p~vvQefI~h----~g--~~~Kv~ViG~~ 197 (330)
+=...+|+||.. .+.+.|+.++.+.+.+... +..+++|-||++ +| .|+|.||+=.+
T Consensus 197 ~~~~~wIvKP~~---~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~ 270 (497)
T KOG2157|consen 197 SERSWWIVKPAS---KSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTH 270 (497)
T ss_pred cccceEEecccc---ccccceeEEecchhhhhhhhhcccccccccccccceeeeeccCccccCCceeeeeEEEEeec
Confidence 457899999755 4478899999988886543 457999999997 33 35688887554
No 105
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=90.75 E-value=1.3 Score=42.50 Aligned_cols=94 Identities=17% Similarity=0.281 Sum_probs=63.4
Q ss_pred CCCeEEEecccC-CCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCchHHHH
Q 047754 173 EAPILLQEFVNH-GGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPREGFVV 251 (330)
Q Consensus 173 ~~p~vvQefI~h-~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 251 (330)
..-+++.+|.+- .+..|||||-++++++.-.+-. +. |.| +. . ...+ ....+.
T Consensus 149 ~~~LvLrkw~~l~p~~EFRcFV~~~~LiaISQr~~-~~-----------~~~-----L~------~--~~~~--I~~~I~ 201 (299)
T PF07065_consen 149 PYELVLRKWVNLNPSMEFRCFVRNRKLIAISQRDL-NY-----------YDF-----LE------E--LKEE--IRSKIQ 201 (299)
T ss_pred ceEEEEeccccCCccceEEEEEECCEEEEEecccc-cc-----------cHH-----HH------H--HHHH--HHHHHH
Confidence 445788888874 5899999999999987654443 31 111 00 0 0000 123344
Q ss_pred HHH-HHHHHHhCCcEEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 252 ELS-RALREALGLNLFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 252 ~lA-~~~~~~LGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
+.. ..+...+.+.=|-|||.++...+ +.++||+|.|-+.++-
T Consensus 202 ~F~~~~I~~~~~~~~~v~DVyi~~~~~-~v~LID~NPf~~~Td~ 244 (299)
T PF07065_consen 202 EFFEEHIKPKFPLDNYVFDVYITRDKD-KVWLIDFNPFGPRTDP 244 (299)
T ss_pred HHHHHHHHhhCCCCCEEEEEEEcCCCC-eEEEEEecCCcccCcc
Confidence 444 56788899999999999986534 5899999999885544
No 106
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=90.72 E-value=1.4 Score=43.38 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=53.9
Q ss_pred CCccCCcEEEecCchhhhhhHHHHHhcCC-CcEEEeeCCC-CCCCCCcceEEEeChhhhhcC-----C------------
Q 047754 113 EKVSVPNQAVVSETELVTRDMAIEELKLR-FPLIAKPLEA-NGSDKSHQMYLIFDNEGLEVL-----E------------ 173 (330)
Q Consensus 113 ~~i~~P~~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a-~Gs~~sh~m~iv~~~~~L~~l-----~------------ 173 (330)
+|||+|+..+..+++.... + ...++ .|+|+|+..- +|-..+-|+-++.|.++..+. .
T Consensus 15 ~GiPvp~g~v~~s~eea~~---~-a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v 90 (387)
T COG0045 15 YGIPVPPGYVATSPEEAEE---A-AKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPV 90 (387)
T ss_pred cCCCCCCceeeeCHHHHHH---H-HHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCcee
Confidence 8999999999999888754 2 24555 8999999753 344445689999998777642 2
Q ss_pred CCeEEEecccCCCeEE
Q 047754 174 APILLQEFVNHGGIIF 189 (330)
Q Consensus 174 ~p~vvQefI~h~g~~~ 189 (330)
.-++++++++|..+.|
T Consensus 91 ~~vlvee~~~~~~~E~ 106 (387)
T COG0045 91 NKVLVEEAVDIIKKEY 106 (387)
T ss_pred eEEEEEecCCCccceE
Confidence 1489999999765444
No 107
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=90.44 E-value=0.17 Score=54.70 Aligned_cols=230 Identities=16% Similarity=0.186 Sum_probs=128.3
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCCc--CC----------------------CccEEEEccCChhH----HHHHHHHHHhC
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLTE--QG----------------------PFDCIMHKLYGPDW----TQQLQQFSSRN 78 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~~--q~----------------------~~DvilhK~~~~~~----~~~l~~~~~~~ 78 (330)
.+-+++.++.|+..+.|+|+..... +| ..|.++--+.++.. .+.-..-+-+.
T Consensus 401 sQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflpvT~~~vt~vi~~erPd~il~tfggqtaLncgvel~k~gvf~~ 480 (1435)
T KOG0370|consen 401 SQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLPVTPEYVTKVIKAERPDGILLTFGGQTALNCGVELDKAGVFAQ 480 (1435)
T ss_pred HHHHHhhhhcccEEEEECCcccccccccccceEEEEeecCHHHHHHHHHhhCCCeEEEecCCccccccceeeeecccccc
Confidence 3457889999999999999853221 22 23444444443310 00001111123
Q ss_pred CCceecC-hHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCC
Q 047754 79 PDVRIID-PPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKS 157 (330)
Q Consensus 79 p~v~viD-p~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~s 157 (330)
+++.|+- |.+++...-||-.....|.++ +.++-++...++-+.+.. ....++||+|+....+-|.
T Consensus 481 ~~vkvLgt~i~ti~ttedr~lfa~am~ei-------~e~ia~s~a~~sie~al~----aae~l~ypvivRaayalgg--- 546 (1435)
T KOG0370|consen 481 YGVKVLGTPIQTIITTEDRDLFARALNEI-------NEKIAPSEAVSTIEEALE----AAERLGYPVIVRAAYALGG--- 546 (1435)
T ss_pred cchhhhCCCcccceeeccHHHHHHHHHhh-------cccccchhhHhHHHHHHH----HHHhcCcHHHHHHHHHhcC---
Confidence 4666665 778899999999988888863 444444444444333321 2377999999997655322
Q ss_pred cceEEEeChhhhhcC-------CCCeEEEecccCCCeEEEEEEECCeEE-EEEeecCCCcchhhhhccCcccccCCcccC
Q 047754 158 HQMYLIFDNEGLEVL-------EAPILLQEFVNHGGIIFKVYVAGSSVK-CVKRKSLPDISEEKMKSLKGFLPFSQISSN 229 (330)
Q Consensus 158 h~m~iv~~~~~L~~l-------~~p~vvQefI~h~g~~~Kv~ViG~~v~-~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~ 229 (330)
-|-..+.|+++|.++ .+.++++.=+. +....-+=|+.|.+- |..-..+.|+.+-+ +
T Consensus 547 lgSgfa~n~eeL~~l~~~a~a~s~QilvekSlk-GwkevEyevvrDa~~nciTvcnmen~Dplg---------------i 610 (1435)
T KOG0370|consen 547 LGSGFANNEEELQDLAAQALALSPQILVEKSLK-GWKEVEYEVVRDAYDNCITVCNMENFDPLG---------------I 610 (1435)
T ss_pred ccccccccHHHHHHHHhhccccCceeeehhhhc-cccceEEEEEeccccchhhhcCCcccCcce---------------e
Confidence 344567899999875 34566665553 555666667766553 22222223332211 1
Q ss_pred CCCCccccccccCCCCc---hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCC
Q 047754 230 SVDADEEVDLEKTEMPR---EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLP 289 (330)
Q Consensus 230 ~~~~~~~~~~~~~~~~~---~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fP 289 (330)
+.|.. .-..+..... ...++..|.++-+.||.- =.++-...+.. ...|+|||||+-=
T Consensus 611 htGdS--iVvapsqtlsd~ey~mlrttaikVirhlgvvGEcniQyaL~p~-s~~y~IiEVNarL 671 (1435)
T KOG0370|consen 611 HTGDS--IVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPY-SLEYRIIEVNARL 671 (1435)
T ss_pred eccce--EEEeeccccChHHHHHHHhcchhheeccCCcccccceeeeccc-ceeEEEEEEEeEE
Confidence 11110 0011111111 345677788888888864 22366666543 3469999999643
No 108
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=87.63 E-value=0.94 Score=43.57 Aligned_cols=66 Identities=15% Similarity=0.251 Sum_probs=46.4
Q ss_pred CHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC--
Q 047754 95 NRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL-- 172 (330)
Q Consensus 95 dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-- 172 (330)
||..-+.+|.+ +||++|+-. +++++ +.-|+|||...|- +++|-.++.+.+++..-
T Consensus 124 ~~~~~~~lLek-------Agi~~P~~~--~~Pee-----------Idr~VIVK~pgAk---ggRGyFiA~s~eef~ek~e 180 (361)
T COG1759 124 DRKLEYKLLEK-------AGLRIPKKY--KSPEE-----------IDRPVIVKLPGAK---GGRGYFIASSPEEFYEKAE 180 (361)
T ss_pred chhhHHHHHHH-------cCCCCCccc--CChHH-----------cCCceEEecCCcc---CCceEEEEcCHHHHHHHHH
Confidence 55566677765 899999953 44443 3349999976654 57999999999888641
Q ss_pred ---C---------CCeEEEeccc
Q 047754 173 ---E---------APILLQEFVN 183 (330)
Q Consensus 173 ---~---------~p~vvQefI~ 183 (330)
+ ....+||||=
T Consensus 181 ~l~~~gvi~~edlkna~IeEYv~ 203 (361)
T COG1759 181 RLLKRGVITEEDLKNARIEEYVV 203 (361)
T ss_pred HHHHcCCcchhhhhhceeeEEee
Confidence 1 1467888874
No 109
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=83.72 E-value=1.8 Score=43.55 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcC---CCcEEEeeCCC-CCCCCC-------cceEEEeC
Q 047754 97 DSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKL---RFPLIAKPLEA-NGSDKS-------HQMYLIFD 165 (330)
Q Consensus 97 ~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l---~fP~VvKp~~a-~Gs~~s-------h~m~iv~~ 165 (330)
+...++|++ +|||+|+..++.+.+++.. .. ..+ ++|+|+|.... +|--.+ -|+.+..+
T Consensus 33 yqaK~LL~~-------~GIpvp~~~va~t~eea~~--aa--~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~ 101 (422)
T PLN00124 33 YQGAELMSK-------YGVNVPKGAAASSLDEVKK--AL--EKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK 101 (422)
T ss_pred HHHHHHHHH-------cCCCCCCceeeCCHHHHHH--HH--HHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH
Confidence 344566664 8999999999998876653 22 345 69999999853 222212 34556655
Q ss_pred hhhhhc
Q 047754 166 NEGLEV 171 (330)
Q Consensus 166 ~~~L~~ 171 (330)
+++.+
T Consensus 102 -eea~~ 106 (422)
T PLN00124 102 -DKAEE 106 (422)
T ss_pred -HHHHH
Confidence 55543
No 110
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=81.58 E-value=4.6 Score=33.38 Aligned_cols=80 Identities=20% Similarity=0.382 Sum_probs=43.4
Q ss_pred EEEEEeccC---CcccCcchHHHHHHHHCCCeEEEeCCCCCCC------------------------------cCCCccE
Q 047754 11 KIGYVFAPN---KEQTVIQPSLITKATEQGIGLIRIDPDKPLT------------------------------EQGPFDC 57 (330)
Q Consensus 11 ~vg~~~~~~---k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~------------------------------~q~~~Dv 57 (330)
+||+.+-|= |..+..+-.|+.+|-++|+++....++.-.. ....||+
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~~~~g~~~a~~~~v~~~~~~~~~~~~~~~~~~~L~~~Dv 81 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLSLRDGRVWARARPVEVKDDPKDWYKLGEEEEIPLDDFDV 81 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEEEETTEEEEEEEEEEE-S-SS--EEEEEEEEEEGGGSSE
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEEEECCEEEEEEEEEEEecCCCCcEecCCcEEcccccCCE
Confidence 466666641 2223333458899999999999988873100 0135888
Q ss_pred EEEccCCh---hH--HHHHHHHHHhCCCceecChHHHHH
Q 047754 58 IMHKLYGP---DW--TQQLQQFSSRNPDVRIIDPPESIE 91 (330)
Q Consensus 58 ilhK~~~~---~~--~~~l~~~~~~~p~v~viDp~~ai~ 91 (330)
|+.|---+ .+ .-++-+.+ +..|+.|||.|++++
T Consensus 82 vlmRkDPPfD~~yi~aT~lLe~a-~~~gv~VvN~P~~lR 119 (119)
T PF02951_consen 82 VLMRKDPPFDMEYIYATYLLELA-ERQGVLVVNDPQSLR 119 (119)
T ss_dssp EEEE--S---HHHHHHHHHHHHH-HHTT-EEES-HHHHH
T ss_pred EEEecCCCCChHHHHHHHHHHHh-hhCCcEEEeChhhcC
Confidence 88884322 22 12333444 336999999999985
No 111
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.54 E-value=1.6 Score=43.88 Aligned_cols=54 Identities=24% Similarity=0.247 Sum_probs=36.4
Q ss_pred CCCcEEEeeCCCCCCCCCcceEEEeChhhhhcCCCCeEEEecccC-------CCeEEEEEEECCe
Q 047754 140 LRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVLEAPILLQEFVNH-------GGIIFKVYVAGSS 197 (330)
Q Consensus 140 l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l~~p~vvQefI~h-------~g~~~Kv~ViG~~ 197 (330)
+.-|+||||..|+ .+.|++++.++.+...++. .++||||-. =-.|+|||++=-.
T Consensus 225 ~KrtfivkpDsga---qg~giylisDir~~g~~Q~-~~vQeyV~~pLli~dkyKfd~rvy~likS 285 (565)
T KOG2158|consen 225 MKRTFIVKPDSGA---QGSGIYLISDIREKGEYQN-KKVQEYVTYPLLISDKYKFDQRVYSLIKS 285 (565)
T ss_pred hcccEEECCCCCC---CCcceeeechhhhhhHHHH-HHHHHHhcccccccccceeeeeeeeeeec
Confidence 3449999998854 4569999977655544433 678888743 3457788877543
No 112
>PLN02235 ATP citrate (pro-S)-lyase
Probab=78.78 E-value=14 Score=37.12 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=48.4
Q ss_pred CCccCCcEEEe-cCchhhhhhHHHHH-hcCCC-cEEEeeCCCC-CCCCCcceEEEeChhhhhcC-----CC---------
Q 047754 113 EKVSVPNQAVV-SETELVTRDMAIEE-LKLRF-PLIAKPLEAN-GSDKSHQMYLIFDNEGLEVL-----EA--------- 174 (330)
Q Consensus 113 ~~i~~P~~~~~-~~~~~~~~~~~l~~-~~l~f-P~VvKp~~a~-Gs~~sh~m~iv~~~~~L~~l-----~~--------- 174 (330)
.+||+|+..++ .+.++... ...+ ..++. ++|+|+.+-. |--.+-++-++.+.++.... ..
T Consensus 23 ~gipvP~~~v~~~~~ee~~~--~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G 100 (423)
T PLN02235 23 AGIDLPIRSAQVTESTDFNE--LANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKG 100 (423)
T ss_pred CCCCCCCCeeccCCHHHHHH--HHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHHHhCCceEecCCCc
Confidence 59999999988 77666543 2211 12555 4699998643 33445679999998887652 21
Q ss_pred ---CeEEEecccCCC
Q 047754 175 ---PILLQEFVNHGG 186 (330)
Q Consensus 175 ---p~vvQefI~h~g 186 (330)
-++++++++|.-
T Consensus 101 ~v~~vLVEe~v~i~~ 115 (423)
T PLN02235 101 PITTFIVEPFVPHDQ 115 (423)
T ss_pred cEeEEEEEecCCCcc
Confidence 368888888753
No 113
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.99 E-value=2.2 Score=42.80 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=29.0
Q ss_pred hcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC--CCCeEEEecccCC
Q 047754 138 LKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL--EAPILLQEFVNHG 185 (330)
Q Consensus 138 ~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l--~~p~vvQefI~h~ 185 (330)
.+..==+||||=.- +.+-.|.+-.+..+.-+. ..|-++|+||+|+
T Consensus 409 ~g~~N~WI~KPWNl---AR~~Dt~vT~~L~~IIRm~EtgPKiv~kYIe~P 455 (631)
T KOG2155|consen 409 NGQHNVWIVKPWNL---ARGMDTTVTEDLNQIIRMIETGPKIVCKYIERP 455 (631)
T ss_pred cCcCceEEechhhh---hhcccchhhhhHHHHHHHHhcCchHHHHhcCCc
Confidence 55666799999652 133445554444444333 5699999999984
No 114
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=69.78 E-value=25 Score=29.81 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=48.6
Q ss_pred CCCceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCCC------------ccEEEEccCChhHHHHHH
Q 047754 6 GQPYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGP------------FDCIMHKLYGPDWTQQLQ 72 (330)
Q Consensus 6 ~~~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~------------~DvilhK~~~~~~~~~l~ 72 (330)
.-++..|+..|.+ |-+-+ -.|..++.+.|..++.++....-...|+ +|+|+.|-..+.....+.
T Consensus 36 ~l~gk~v~~lF~e~StRTR---~SFe~A~~~LGg~~i~~~~~~s~~~k~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~a 112 (142)
T PF02729_consen 36 LLKGKTVALLFFEPSTRTR---LSFEAAANRLGGHVIYLDPSTSSLGKGESLEDTARVLSRYVDAIVIRHPSHGALEELA 112 (142)
T ss_dssp TTTTCEEEEEESS--HHHH---HHHHHHHHHTTCEEEEEETTTSSTTTSSEHHHHHHHHHHHCSEEEEEESSHHHHHHHH
T ss_pred cCCCCEEEEEecCCCchhh---hhHHHhhhcceeEEEEECcccccCcCCCCHHHHHHHHHHhhheEEEEeccchHHHHHH
Confidence 3455667776665 33433 3588889999999999997643322222 799999977665444333
Q ss_pred HHHHhCCCceecC
Q 047754 73 QFSSRNPDVRIID 85 (330)
Q Consensus 73 ~~~~~~p~v~viD 85 (330)
++..+||||
T Consensus 113 ----~~~~vPVIN 121 (142)
T PF02729_consen 113 ----EHSSVPVIN 121 (142)
T ss_dssp ----HHCSSEEEE
T ss_pred ----HhccCCeEc
Confidence 345899999
No 115
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=64.49 E-value=26 Score=35.04 Aligned_cols=165 Identities=21% Similarity=0.282 Sum_probs=90.7
Q ss_pred chHHHHHHHHCCCeEEEeCCCCC-CCcCCCc--c---EEE---EccCChhHHHH--HHHHHHhCCCceecChHHHHHHhc
Q 047754 26 QPSLITKATEQGIGLIRIDPDKP-LTEQGPF--D---CIM---HKLYGPDWTQQ--LQQFSSRNPDVRIIDPPESIERLH 94 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~-l~~q~~~--D---vil---hK~~~~~~~~~--l~~~~~~~p~v~viDp~~ai~~~~ 94 (330)
..-|...|++.|++...+++..- +.+.|.| | ..| =|+..-+|+.. .-+.+. ..++.+|||+-+ ..+.
T Consensus 193 ~~yL~~~a~~AG~~t~~~~i~di~~~~~g~f~vD~~g~~I~~lfKlyPwE~~~~e~~~~~l~-~~~~~~ieP~wk-~lls 270 (397)
T PHA02117 193 IAYLAETATEAGAVVKFFDIQEIQLSDRGPFFVDGEDAPIDMCFKLYPWEWMMEDEFSAEIL-VSQTRFIEPAWK-MMLS 270 (397)
T ss_pred HHHHHHHHHHcCCceEEeehheEEEcCCCceEECCCCCEeeeeeecccHHHHhhCcchhhhh-hCCcEEechhHH-hHhc
Confidence 34478889999999888877731 1122322 2 122 23333233221 111232 257999999955 4567
Q ss_pred CHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCC-CcEEEeeCCCCCCCCCcceEEEeChhhhhc--
Q 047754 95 NRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLR-FPLIAKPLEANGSDKSHQMYLIFDNEGLEV-- 171 (330)
Q Consensus 95 dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-- 171 (330)
||..+ .+|.++- .+++--.|.+.. ++. ..... ..++ -..|.||+.| - .+.+|.|+.+-..+.+
T Consensus 271 nKalL-alLW~l~---p~hp~LLpay~~----~d~-~~~~~--~~~~~~~yV~KPi~g--R-EG~nV~i~~~g~~~~~~~ 336 (397)
T PHA02117 271 NKGLL-ALLYERY---PDCPWLVPAYVE----DDF-DRENL--FTLENPKYVSKPLLS--R-EGNNIHIFEYGGESEDTD 336 (397)
T ss_pred cHHHH-HHHHHhc---CCCccccccccc----ccc-cccch--hccccCCEEeccCCC--c-CCCCEEEEECCeEEeccC
Confidence 87443 4555431 123333333221 110 00000 0011 1499999994 3 5668999866333322
Q ss_pred --C-CCCeEEEecccC---C-Ce-EEEEEEECCeEE-EEEeecC
Q 047754 172 --L-EAPILLQEFVNH---G-GI-IFKVYVAGSSVK-CVKRKSL 206 (330)
Q Consensus 172 --l-~~p~vvQefI~h---~-g~-~~Kv~ViG~~v~-~~~R~S~ 206 (330)
+ +.++|.|+|++= + .. .+-+|+|||+.. +..|.+.
T Consensus 337 g~y~~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~~aGlgiRe~~ 380 (397)
T PHA02117 337 GNYAEEPRVVQQLIEWGRFDGCYPMIGVWMVGSEAAGLCIREDD 380 (397)
T ss_pred CCCCCCCeEEEEccCCcccCCcEEEEEEEEECCEeeEEEEecCC
Confidence 2 579999999984 2 33 578999999887 4557653
No 116
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=58.25 E-value=1.5e+02 Score=28.70 Aligned_cols=126 Identities=17% Similarity=0.197 Sum_probs=74.1
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~~ 74 (330)
....++..|.. |-|-++ +|--++...|-+...++++..-...+ =+|+|..|...+.....+.+
T Consensus 43 ~gk~laliFeK~STRTR~---SFeva~~qlGg~~~~l~~~~~Qlgr~Esi~DTArVLsr~~D~I~~R~~~~~~ve~lA~- 118 (310)
T COG0078 43 KGKNLALIFEKTSTRTRV---SFEVAATQLGGHAIYLGPGDSQLGRGESIKDTARVLSRMVDAIMIRGFSHETLEELAK- 118 (310)
T ss_pred CCceEEEEecCCCchhhh---hHHHHHHHcCCCeEEeCCCccccCCCCcHHHHHHHHHhhhheEEEecccHHHHHHHHH-
Confidence 36788888876 445554 47778899999999999995322222 27999999887765554444
Q ss_pred HHhCCCceecChHHHHHHhcCHHHHHHHHHhhh-hhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEE
Q 047754 75 SSRNPDVRIIDPPESIERLHNRDSMLEVVSRLK-IELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIA 146 (330)
Q Consensus 75 ~~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~-~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~Vv 146 (330)
|.++||||-+ .|.+-=+|+|+.+- ...+...+.-=+.+-+-+.++..+...+..+.+|+-+.+
T Consensus 119 ---~s~VPViNgL------tD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~i 182 (310)
T COG0078 119 ---YSGVPVINGL------TDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDGNNVANSLLLAAAKLGMDVRI 182 (310)
T ss_pred ---hCCCceEccc------ccccCcHHHHHHHHHHHHhcCcccCcEEEEEcCcchHHHHHHHHHHHhCCeEEE
Confidence 4689999976 55555555555432 122222233334444445444433212223444554433
No 117
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=52.71 E-value=57 Score=31.79 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=47.2
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~~ 74 (330)
.+..|+..|.+ |-|-+ -+|..++.++|.++..+|++..-...| =+|+|+.|...+.....+.+
T Consensus 44 ~gk~l~~lF~epSTRTR---~SFE~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~iviR~~~~~~~~~~a~- 119 (334)
T PRK12562 44 TGKNIALIFEKDSTRTR---CSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAE- 119 (334)
T ss_pred CCCEEEEEECCCCchhH---HHHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHhCCEEEEECCchHHHHHHHH-
Confidence 45567766554 44544 358888999999999998874222122 27999999776554343333
Q ss_pred HHhCCCceecC
Q 047754 75 SSRNPDVRIID 85 (330)
Q Consensus 75 ~~~~p~v~viD 85 (330)
+.++||||
T Consensus 120 ---~~~vPVIN 127 (334)
T PRK12562 120 ---YAGVPVWN 127 (334)
T ss_pred ---hCCCCEEE
Confidence 45799999
No 118
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=52.45 E-value=1.4e+02 Score=29.61 Aligned_cols=56 Identities=21% Similarity=0.163 Sum_probs=37.4
Q ss_pred EEEeeCCCCCCCCCcceEEEeChhhhhcCC----------------CCeEEEecccCCCe------EEEEEEECCeEEEE
Q 047754 144 LIAKPLEANGSDKSHQMYLIFDNEGLEVLE----------------APILLQEFVNHGGI------IFKVYVAGSSVKCV 201 (330)
Q Consensus 144 ~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l~----------------~p~vvQefI~h~g~------~~Kv~ViG~~v~~~ 201 (330)
+|||-.. |+ .+-|+..|.+.+++..++ ..+++||=|.+.-+ +==||+||..|++.
T Consensus 260 ViVKADa--GT-YGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~avAEPVVYmid~~vvgg 336 (403)
T TIGR02049 260 VIVKADA--GT-YGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEAVAEPVVYMIGRTVTGG 336 (403)
T ss_pred EEEEcCC--CC-CCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCcccCceEEEECCEEeEE
Confidence 5678444 45 555666677778887652 15999998876222 22489999998864
Q ss_pred E
Q 047754 202 K 202 (330)
Q Consensus 202 ~ 202 (330)
-
T Consensus 337 f 337 (403)
T TIGR02049 337 F 337 (403)
T ss_pred E
Confidence 4
No 119
>KOG2983 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.66 E-value=67 Score=30.42 Aligned_cols=85 Identities=14% Similarity=0.231 Sum_probs=50.8
Q ss_pred eEEEeccc-CCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCchHHHHHHH
Q 047754 176 ILLQEFVN-HGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPREGFVVELS 254 (330)
Q Consensus 176 ~vvQefI~-h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~lA 254 (330)
.++-++-+ |++-.|||||=.++.+....|-..|.. ++=. + ..+.++.+.
T Consensus 165 LvLrkWc~l~p~~EFRcFVKsn~lvg~~QRd~tnyY-----------d~l~--e-----------------~kd~~k~lI 214 (334)
T KOG2983|consen 165 LVLRKWCPLKPEMEFRCFVKSNELVGICQRDVTNYY-----------DVLL--E-----------------EKDLLKGLI 214 (334)
T ss_pred hhHhhhcCCCcCceEEEEEeccceeeeeeccchhHH-----------HHHH--H-----------------HHHHHHHHH
Confidence 44444333 578999999999999866554443321 1100 0 122333333
Q ss_pred HHH-----HHHhCCcEEEEEEEEeCCCCCeeEEEEeeCCCCCC
Q 047754 255 RAL-----REALGLNLFNFDLIRDAGERDGYLVIDINYLPGYA 292 (330)
Q Consensus 255 ~~~-----~~~LGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~ 292 (330)
..+ .-.+--.-|-|||-++.. + +.++||+|.|=|-+
T Consensus 215 ~eff~d~i~~kF~dedfvfDVYi~k~-~-kv~lID~Npf~~~T 255 (334)
T KOG2983|consen 215 EEFFKDKILFKFPDEDFVFDVYITKE-R-KVWLIDFNPFCGST 255 (334)
T ss_pred HHHHHhhhhccCCCCCeeEEEEecCC-C-cEEEEeccCccCcc
Confidence 333 333445568899999864 4 58999999997743
No 120
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=48.54 E-value=23 Score=31.59 Aligned_cols=66 Identities=17% Similarity=0.378 Sum_probs=37.3
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCcCCCccEEEEc---cCChhHHHHHHHHHHhCCCceecChHHHHHHhcCHHH
Q 047754 29 LITKATEQGIGLIRIDPDKPLTEQGPFDCIMHK---LYGPDWTQQLQQFSSRNPDVRIIDPPESIERLHNRDS 98 (330)
Q Consensus 29 l~~~~~~~Gi~~~~id~~~~l~~q~~~DvilhK---~~~~~~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~ 98 (330)
+-+++.++|+.+..|+++.++. ++.+++-- +.++...++|.+|+++ .|.+++.+...+..-.++..
T Consensus 35 ~y~al~~~gi~vDvv~~~~dL~---~Ykllv~P~~~~l~~~~~~~L~~yV~~-GG~li~~~~tg~~d~~~~~~ 103 (207)
T PF08532_consen 35 WYRALRELGIPVDVVSPDDDLS---GYKLLVLPSLYILSPEFAERLRAYVEN-GGTLILTPRTGVKDENGRVR 103 (207)
T ss_dssp HHHHHHTTT--EEEE-TTS--T---T-SEEEES--SC--HHH---HHHHHT--SS-EEE-TTTT-B-TTS---
T ss_pred HHHHHHHcCCceEEecCcCCcc---cCcEEEEeeEEEEChHHHHHHHHHHHC-CCEEEEEcccCCcCCCCcCc
Confidence 4567899999999999998666 57888843 4456667899999965 68999998887777777654
No 121
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=44.97 E-value=79 Score=30.82 Aligned_cols=71 Identities=18% Similarity=0.282 Sum_probs=46.9
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~~ 74 (330)
.+.+++..|.+ |-|-+. +|..++.++|-.+..+|.+..-...| =+|+|+.|...+.....+.+
T Consensus 44 ~gk~l~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~Iv~R~~~~~~~~~~a~- 119 (336)
T PRK03515 44 TGKNIALIFEKDSTRTRC---SFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAE- 119 (336)
T ss_pred CCCEEEEEecCCChhHHH---HHHHHHHHcCCcEEEeCCccccCCCCCCHHHHHHHHHHhCcEEEEEeCChHHHHHHHH-
Confidence 35556655554 555553 58888999999999998874222222 17999999776554443333
Q ss_pred HHhCCCceecC
Q 047754 75 SSRNPDVRIID 85 (330)
Q Consensus 75 ~~~~p~v~viD 85 (330)
+.++||||
T Consensus 120 ---~~~vPVIN 127 (336)
T PRK03515 120 ---YAGVPVWN 127 (336)
T ss_pred ---hCCCCEEE
Confidence 45799999
No 122
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=43.35 E-value=80 Score=30.69 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=46.9
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~~ 74 (330)
.+.+|+..|.+ |-|-++ +|..++.++|-+++.++.+..-...| =+|+|+.|-..+.....+.+
T Consensus 45 ~gk~v~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iv~R~~~~~~~~~~a~- 120 (334)
T PRK01713 45 KGKNIALIFEKTSTRTRC---AFEVAAYDQGAQVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQSIVNELAE- 120 (334)
T ss_pred CCCEEEEEeCCCCchHHH---HHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEEcCchHHHHHHHH-
Confidence 45667765554 555553 58888999999999998874222122 27999999765554333333
Q ss_pred HHhCCCceecC
Q 047754 75 SSRNPDVRIID 85 (330)
Q Consensus 75 ~~~~p~v~viD 85 (330)
+.+++|||
T Consensus 121 ---~~~vPVIN 128 (334)
T PRK01713 121 ---YAGVPVFN 128 (334)
T ss_pred ---hCCCCEEE
Confidence 35799999
No 123
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=42.81 E-value=82 Score=30.66 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=46.6
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~~ 74 (330)
.+.+++..|.+ |-|-++ +|..++.+.|..++.+|++..-...| =+|+|+.|...+.....+.+
T Consensus 45 ~gk~v~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~rvls~y~D~iviR~~~~~~~~~~a~- 120 (331)
T PRK02102 45 EGKNIALIFEKTSTRTRC---AFEVAAIDLGAHVTYLGPNDSQLGKKESIEDTARVLGRMYDGIEYRGFKQEIVEELAK- 120 (331)
T ss_pred CCCEEEEEeCCCChhHHH---HHHHHHHHcCCCEEEcCcccccCCCCcCHHHHHHHHhhcCCEEEEECCchHHHHHHHH-
Confidence 35566655554 555553 58888999999999998874222111 27999999765544333333
Q ss_pred HHhCCCceecC
Q 047754 75 SSRNPDVRIID 85 (330)
Q Consensus 75 ~~~~p~v~viD 85 (330)
+.++||||
T Consensus 121 ---~~~vPVIN 128 (331)
T PRK02102 121 ---YSGVPVWN 128 (331)
T ss_pred ---hCCCCEEE
Confidence 35799999
No 124
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=41.79 E-value=97 Score=29.68 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=47.1
Q ss_pred CCceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHH
Q 047754 7 QPYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQ 73 (330)
Q Consensus 7 ~~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~ 73 (330)
-.+..|+..|.+ |-|-++ +|..++.+.|-++..++.+..-...| =+|+|+.|.........+
T Consensus 41 L~gk~v~~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~~~~~~-- 115 (304)
T PRK00779 41 LKGKTLAMIFEKPSTRTRV---SFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHETLEEL-- 115 (304)
T ss_pred CCCCEEEEEecCCCchHHH---HHHHHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCChhHHHHH--
Confidence 345566655554 555553 58889999999999999864322222 179999887655443333
Q ss_pred HHHhCCCceecC
Q 047754 74 FSSRNPDVRIID 85 (330)
Q Consensus 74 ~~~~~p~v~viD 85 (330)
+++.+++|||
T Consensus 116 --a~~~~vPVIN 125 (304)
T PRK00779 116 --AEYSTVPVIN 125 (304)
T ss_pred --HHhCCCCEEe
Confidence 3345799999
No 125
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=40.45 E-value=1.1e+02 Score=29.86 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=46.8
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~~ 74 (330)
.+.+++..|.+ |-|-++ +|..++.++|-+++.+|++..-...| =+|+|+.|...+.....+.+
T Consensus 44 ~gk~l~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iviR~~~~~~~~~~a~- 119 (332)
T PRK04284 44 KGKNIALIFEKDSTRTRC---AFEVAAYDQGAHVTYLGPTGSQMGKKESTKDTARVLGGMYDGIEYRGFSQRTVETLAE- 119 (332)
T ss_pred CCCEEEEEecCCChhHHH---HHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEecCchHHHHHHHH-
Confidence 34556655554 555553 58888999999999998874321112 27999999776554343333
Q ss_pred HHhCCCceecC
Q 047754 75 SSRNPDVRIID 85 (330)
Q Consensus 75 ~~~~p~v~viD 85 (330)
+.++||||
T Consensus 120 ---~s~vPVIN 127 (332)
T PRK04284 120 ---YSGVPVWN 127 (332)
T ss_pred ---hCCCCEEE
Confidence 35799999
No 126
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.14 E-value=48 Score=34.11 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=31.4
Q ss_pred CcEEEEEEEEeCCCCCeeEEEEeeCCCCCCCCCCcHHHHHHHH
Q 047754 263 LNLFNFDLIRDAGERDGYLVIDINYLPGYAKLPGYETLLMDFF 305 (330)
Q Consensus 263 l~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~~~~l~~~i 305 (330)
-.+||+|+++++ ... +|.||||++|.++..-.....|+..+
T Consensus 377 FElyG~DfliD~-~lk-pwLiEiNssP~~~~t~~~d~~l~~~l 417 (497)
T KOG2157|consen 377 FELYGFDFLIDE-ALK-PWLIEINASPDLTQTTKNDARLKSKL 417 (497)
T ss_pred hhhhCcceeecC-CCC-eEEEEeecCCcccccchhhhHHHHHH
Confidence 468999999996 565 68999999999998866544444433
No 127
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=38.67 E-value=54 Score=31.25 Aligned_cols=34 Identities=21% Similarity=0.496 Sum_probs=25.7
Q ss_pred HHHHHHhCCcE------EEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 255 RALREALGLNL------FNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 255 ~~~~~~LGl~l------~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
..+.+..|.++ =-||+++.. ++.+|+||+|++-|
T Consensus 179 ~~i~~~~~~d~~~~k~~KrFDFvi~~--~~k~y~IE~NFY~~ 218 (286)
T PF04556_consen 179 SEIKEKWGIDLSVGKSEKRFDFVIKT--NKKIYLIETNFYGS 218 (286)
T ss_pred HHHHHHhCCcccCCCCceEEEEEEEc--CCEEEEEEEeeecC
Confidence 44556677776 559999964 34689999999988
No 128
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=38.61 E-value=1.2e+02 Score=29.02 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=47.4
Q ss_pred CceEEEEEe-ccCCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHHH
Q 047754 8 PYCKIGYVF-APNKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 8 ~~~~vg~~~-~~~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~~ 74 (330)
++.+++..| -||-|-.+ +|..++.++|-+++.++.+..-...| =+|+|+.|...+.....+.
T Consensus 37 ~gk~~~~lF~epSTRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iviR~~~~~~~~~~a-- 111 (302)
T PRK14805 37 AGKSVVMLFEKPSLRTRV---SFDIGINKLGGHCLYLDQQNGALGKRESVADFAANLSCWADAIVARVFSHSTIEQLA-- 111 (302)
T ss_pred CCCEEEEEecCCCchHHH---HHHHHHHHcCCcEEECCCCcCcCCCCcCHHHHHHHHHHhCCEEEEeCCChhHHHHHH--
Confidence 345566444 44656553 58888999999999998764222222 2899999976555434333
Q ss_pred HHhCCCceecChH
Q 047754 75 SSRNPDVRIIDPP 87 (330)
Q Consensus 75 ~~~~p~v~viDp~ 87 (330)
++.+++|||-.
T Consensus 112 --~~~~vPVINa~ 122 (302)
T PRK14805 112 --EHGSVPVINAL 122 (302)
T ss_pred --HhCCCCEEECC
Confidence 34579999943
No 129
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=36.90 E-value=41 Score=32.74 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=18.5
Q ss_pred CCcEEEEEEEEeCCCCCeeEEEEeeCCC
Q 047754 262 GLNLFNFDLIRDAGERDGYLVIDINYLP 289 (330)
Q Consensus 262 Gl~l~GvDvi~~~~~g~~~~ViEVN~fP 289 (330)
-+.++|+|++.+. +|+ ++|||.|.--
T Consensus 67 ~~~~~g~Dl~r~~-dG~-w~VleDn~~~ 92 (330)
T PF04174_consen 67 RLHFYGADLVRDP-DGR-WRVLEDNTRA 92 (330)
T ss_dssp S-SEEEEEEEE-S-SS--EEEEEEE-SS
T ss_pred EEEEEEEeeeECC-CCC-EEEEEecCCC
Confidence 4889999999986 564 7999999654
No 130
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=36.38 E-value=1.6e+02 Score=28.15 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=48.2
Q ss_pred CceEEEEEe-ccCCcccCcchHHHHHHHHCCCeEEEeCC-CCCCCcCC------------CccEEEEccCChhHHHHHHH
Q 047754 8 PYCKIGYVF-APNKEQTVIQPSLITKATEQGIGLIRIDP-DKPLTEQG------------PFDCIMHKLYGPDWTQQLQQ 73 (330)
Q Consensus 8 ~~~~vg~~~-~~~k~~~~~~~~l~~~~~~~Gi~~~~id~-~~~l~~q~------------~~DvilhK~~~~~~~~~l~~ 73 (330)
.+..|+..| .||-|-++ +|..++.++|-+++.++. +..-...| =+|+|+.|...+.....+.+
T Consensus 38 ~gk~v~~lF~~pSTRTR~---SFe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y~D~iviR~~~~~~~~~~a~ 114 (301)
T TIGR00670 38 KGKILANLFFEPSTRTRL---SFETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGYSDAIVIRHPLEGAARLAAE 114 (301)
T ss_pred CCCEEEEEeccCCchhHh---HHHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHhCCEEEEECCchhHHHHHHh
Confidence 345555444 44555554 588889999999999998 53211112 27999999776554444433
Q ss_pred HHHhCCCceecChHH
Q 047754 74 FSSRNPDVRIIDPPE 88 (330)
Q Consensus 74 ~~~~~p~v~viDp~~ 88 (330)
+.+++|||-..
T Consensus 115 ----~s~vPVINa~~ 125 (301)
T TIGR00670 115 ----VSEVPVINAGD 125 (301)
T ss_pred ----hCCCCEEeCCC
Confidence 35799999654
No 131
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=34.62 E-value=24 Score=34.67 Aligned_cols=150 Identities=23% Similarity=0.240 Sum_probs=79.8
Q ss_pred hHHHHHHHHCCCeEEEeCCCC-CCCcCCCc----cEE---EEccCChhH--HHHHHHHHHhCCCceecChHHHHHHhcCH
Q 047754 27 PSLITKATEQGIGLIRIDPDK-PLTEQGPF----DCI---MHKLYGPDW--TQQLQQFSSRNPDVRIIDPPESIERLHNR 96 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~-~l~~q~~~----Dvi---lhK~~~~~~--~~~l~~~~~~~p~v~viDp~~ai~~~~dR 96 (330)
.-|...|.+.|++-..+..+. -+.+.|.| +=+ +-|+..-.| ...+.+-+ +.+++.+|+|+=. .++.||
T Consensus 189 ~~LqD~a~~AG~et~fl~i~~igl~e~G~f~D~~n~~i~~lfKlypwE~m~~e~~~~~l-~~~~~~~lEPaWk-~ilsNK 266 (387)
T COG0754 189 QYLQDCAQEAGFETEFLYIDDIGLGEDGQFTDLDNQVIERLFKLYPWEDMLREELAQNL-ENARTIFLEPAWK-SILSNK 266 (387)
T ss_pred HHHHHHHHhcCcccceeeehhcccCccceeecCCcchHhHHHhhcCHHHHHHHHHHHHh-cCCCcEEechhHH-HHhccc
Confidence 446777788898877776652 12222222 001 112222122 22333333 4578999999844 456777
Q ss_pred HHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeC-hhhhhcC---
Q 047754 97 DSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFD-NEGLEVL--- 172 (330)
Q Consensus 97 ~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~-~~~L~~l--- 172 (330)
.. +.+|.+. -.+++--.|.+...... . ..+---|.||+.| - .+-++.|+.+ .+.+...
T Consensus 267 ~l-LplLW~~---fPnHp~LL~t~F~~~~~---~--------~~~~~yv~KPl~g--R-EGaNv~i~~~~~~~~~~~~G~ 328 (387)
T COG0754 267 AL-LPLLWER---FPNHPNLLPTYFEPDDE---E--------KLGESYVRKPLFG--R-EGANVSIFEDAGKVLDKADGP 328 (387)
T ss_pred cH-HHHHHHh---CCCCcccccccCCCCcc---c--------cchhhhhcccccc--c-cCCCeeEEecCCceeecCCCC
Confidence 44 4455441 11233334444322221 0 1111269999984 3 4458999987 3444433
Q ss_pred --CCCeEEEecccCCCeEEEEEEECC
Q 047754 173 --EAPILLQEFVNHGGIIFKVYVAGS 196 (330)
Q Consensus 173 --~~p~vvQefI~h~g~~~Kv~ViG~ 196 (330)
+.++|.|||.+-+...-+.++||.
T Consensus 329 Yg~eg~IyQe~~~Lpk~~~~Y~~vgS 354 (387)
T COG0754 329 YGEEGMIYQEFYPLPKFGDSYYQVGS 354 (387)
T ss_pred ccccchhhhhhccCcccCCeeEEEEE
Confidence 568999999987654445555543
No 132
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=34.11 E-value=1.8e+02 Score=27.78 Aligned_cols=71 Identities=21% Similarity=0.341 Sum_probs=46.6
Q ss_pred CceEEEEEe-ccCCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHHH
Q 047754 8 PYCKIGYVF-APNKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 8 ~~~~vg~~~-~~~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~~ 74 (330)
.+.+++..| -||-|-++ +|..++.++|-++..+|.+..-...| =+|+|+.|-........+.
T Consensus 38 ~gk~v~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iv~R~~~~~~~~~~a-- 112 (304)
T TIGR00658 38 KGKTLALIFEKPSTRTRV---SFEVAAYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRYVDGIMARVYKHEDVEELA-- 112 (304)
T ss_pred CCCEEEEEecCCCcchHH---HHHHHHHHcCCCEEEeCCccccCCCCCCHHHHHHHHHHhCCEEEEECCChHHHHHHH--
Confidence 455666444 44655553 58888999999999998864321222 2799999976554433333
Q ss_pred HHhCCCceecC
Q 047754 75 SSRNPDVRIID 85 (330)
Q Consensus 75 ~~~~p~v~viD 85 (330)
++.+++|||
T Consensus 113 --~~~~vPVIN 121 (304)
T TIGR00658 113 --KYASVPVIN 121 (304)
T ss_pred --HhCCCCEEE
Confidence 345799999
No 133
>PLN02342 ornithine carbamoyltransferase
Probab=33.83 E-value=1.4e+02 Score=29.27 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=46.5
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~~ 74 (330)
.+..++..|.+ |-+-.+ +|..++.++|-++..+|.+..-...| =+|+|+.|...+.....+.
T Consensus 84 ~gk~va~lF~epSTRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kGESl~DTarvLs~y~D~IviR~~~~~~~~~la-- 158 (348)
T PLN02342 84 KGKSMAMIFTKPSMRTRV---SFETGFFLLGGHALYLGPDDIQLGKREETRDIARVLSRYNDIIMARVFAHQDVLDLA-- 158 (348)
T ss_pred CCCEEEEEecCCCcchHH---HHHHHHHHcCCcEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEeCCChHHHHHHH--
Confidence 45566655544 555553 58888999999999998774221122 2799999976554333333
Q ss_pred HHhCCCceecC
Q 047754 75 SSRNPDVRIID 85 (330)
Q Consensus 75 ~~~~p~v~viD 85 (330)
++.+++|||
T Consensus 159 --~~~~vPVIN 167 (348)
T PLN02342 159 --EYSSVPVIN 167 (348)
T ss_pred --HhCCCCEEE
Confidence 345799999
No 134
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=33.12 E-value=1.6e+02 Score=23.09 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=23.4
Q ss_pred eccCCcccCcchHHHHHHHHCCCeEEEeCCCC
Q 047754 16 FAPNKEQTVIQPSLITKATEQGIGLIRIDPDK 47 (330)
Q Consensus 16 ~~~~k~~~~~~~~l~~~~~~~Gi~~~~id~~~ 47 (330)
-.+.+...+....+..++++.|+++..+|.+.
T Consensus 7 ~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 7 CVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred eeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 34444555555667788899999999999874
No 135
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=31.92 E-value=1.8e+02 Score=28.35 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=46.9
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~~ 74 (330)
.+..|+..|.+ |-|-+. +|..++.++|-.+..++....-...| =+|+|+.|...+.. ++++
T Consensus 41 ~gk~v~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dtarvls~y~D~iviR~~~~~~---~~~~ 114 (338)
T PRK02255 41 KNKTLGMIFEQSSTRTRV---SFETAMTQLGGHAQYLAPGQIQLGGHESLEDTARVLSRLVDIIMARVDRHQT---VVEL 114 (338)
T ss_pred CCCEEEEEeCCCCcchHH---HHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCcEEEEecCChHH---HHHH
Confidence 35566655544 555553 58888999999999998764222222 27999999765543 3333
Q ss_pred HHhCCCceecC
Q 047754 75 SSRNPDVRIID 85 (330)
Q Consensus 75 ~~~~p~v~viD 85 (330)
+++.+++|||
T Consensus 115 -a~~~~vPVIN 124 (338)
T PRK02255 115 -AKYATVPVIN 124 (338)
T ss_pred -HHhCCCCEEE
Confidence 3456899999
No 136
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=30.57 E-value=1.8e+02 Score=24.24 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=40.4
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCCcCCCccEEEEccC---ChhHHHHHHHHHHhCCCceecChH
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLY---GPDWTQQLQQFSSRNPDVRIIDPP 87 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~~q~~~DvilhK~~---~~~~~~~l~~~~~~~p~v~viDp~ 87 (330)
..+-+++.+.|+.+..|+++.++. .|++++--.. +....+.+.+|+++ .|+++.-|-
T Consensus 29 ~~~~~~l~~~gi~~d~v~~~~~l~---~y~~vi~P~~~~~~~~~~~~l~~~v~~-GG~li~~~~ 88 (154)
T cd03143 29 LALYRALRELGIPVDVVPPDADLS---GYKLVVLPDLYLLSDATAAALRAYVEN-GGTLVAGPR 88 (154)
T ss_pred HHHHHHHHHCCCCEEEECCCCCcc---cCCEEEECchhcCCHHHHHHHHHHHHC-CCEEEEecC
Confidence 345677889999999999776654 6888885432 33456788888865 577776554
No 137
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=30.05 E-value=4.1 Score=39.36 Aligned_cols=110 Identities=20% Similarity=0.239 Sum_probs=67.4
Q ss_pred CCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCc
Q 047754 79 PDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSH 158 (330)
Q Consensus 79 p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 158 (330)
..+.-+|.-.....+.++..+...+.+ .++..|.-.-....+... +.+ ..-+++|.|.||+.| | +-
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~vvfp~lhG~~gEDg~i--qg~-le~~giPyvg~gv~~--S--a~ 100 (317)
T COG1181 35 YDVTPVDITEAGLWMLDKEVTKRVLQK-------ADVVFPVLHGPYGEDGTI--QGL-LELLGIPYVGKGVLA--S--AG 100 (317)
T ss_pred ceeEEEeccccceEEeccccchhhccc-------CCEEEEeCCCCCCCCchH--HHH-HHHhCCCEecCchhh--h--hh
Confidence 356667777777777777766666654 455555433332223222 233 256899999999985 3 33
Q ss_pred ceEEEeCh-----hhhhcC-------C--CCeEEEecccCCCeEEEEEEECCeEEEEEee
Q 047754 159 QMYLIFDN-----EGLEVL-------E--APILLQEFVNHGGIIFKVYVAGSSVKCVKRK 204 (330)
Q Consensus 159 ~m~iv~~~-----~~L~~l-------~--~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~ 204 (330)
.|..++.. +++... . ...++++|+ .+..|++||.+++...+.-+
T Consensus 101 ~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~--~~l~~p~~Vkp~~~gSSvg~ 158 (317)
T COG1181 101 AMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVE--EGLGFPLFVKPAREGSSVGR 158 (317)
T ss_pred cccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhh--cccCCCEEEEcCCccceeeE
Confidence 45555544 344332 1 345666777 58889999999998865533
No 138
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=29.89 E-value=1.6e+02 Score=31.32 Aligned_cols=107 Identities=17% Similarity=0.188 Sum_probs=65.1
Q ss_pred CCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCc
Q 047754 79 PDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSH 158 (330)
Q Consensus 79 p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 158 (330)
+.+.+|+|+-+ ..+.||.. +.+|.++- ..+.--.|.+... +. .+ .+-..|.||+.| - .+.
T Consensus 482 ~~~~~iEP~Wk-~llsNKai-LplLW~l~---p~Hp~LLpayfe~----d~----~l----~~~~yV~KPi~G--R-EG~ 541 (619)
T PRK10507 482 PEVLVFEPLWT-VIPGNKAI-LPVLWSLF---PHHRYLLDTDFTV----ND----EL----VKTGYAVKPIAG--R-CGS 541 (619)
T ss_pred CceEEEcccHH-hhcccHHH-HHHHHHhC---CCCcccccccccC----Cc----cc----ccCCeEeccCCC--c-CCC
Confidence 67999999955 45678743 45565431 1233333443311 11 11 112499999994 3 566
Q ss_pred ceEEEeCh-hhhhc----C-CCCeEEEecccC---C-C-eEEEEEEECCeEEE-EEeec
Q 047754 159 QMYLIFDN-EGLEV----L-EAPILLQEFVNH---G-G-IIFKVYVAGSSVKC-VKRKS 205 (330)
Q Consensus 159 ~m~iv~~~-~~L~~----l-~~p~vvQefI~h---~-g-~~~Kv~ViG~~v~~-~~R~S 205 (330)
+|.|+.+. ..+.+ + +.++|.|+|++= + + ..+-+|+|||+... ..|.+
T Consensus 542 nV~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~~aG~giRed 600 (619)
T PRK10507 542 NIDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_pred CEEEEeCCCcEeeccCCCCCCCCeEEEEeccCcccCCCEEEEEEEEECCEEEEEEEecC
Confidence 89998762 22222 2 468999999984 2 2 35689999999874 55765
No 139
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=29.67 E-value=1.2e+02 Score=30.27 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=34.1
Q ss_pred EEEeeCCCCCCCCCcceEEEeChhhhhcCC----------------CCeEEEecccC----CC--eEEEEEEECCeEEEE
Q 047754 144 LIAKPLEANGSDKSHQMYLIFDNEGLEVLE----------------APILLQEFVNH----GG--IIFKVYVAGSSVKCV 201 (330)
Q Consensus 144 ~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l~----------------~p~vvQefI~h----~g--~~~Kv~ViG~~v~~~ 201 (330)
+|||-.. |+ .+-|+..|.+.+++..++ ..+++||=|.+ ++ .+-=||+||.+|++.
T Consensus 263 V~VKAD~--GT-YGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~~vvgg 339 (404)
T PF08886_consen 263 VFVKADA--GT-YGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYTFERFNDAVAEPVVYMIDRYVVGG 339 (404)
T ss_dssp EEEEEE---GG-G-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE-----EEETTEEEEEEEEEETTEEEEE
T ss_pred EEEEcCC--CC-CCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcchhhhhCCccccceEEEECCEEEEE
Confidence 6788544 45 556667778888887652 26999998876 22 233699999999964
Q ss_pred E
Q 047754 202 K 202 (330)
Q Consensus 202 ~ 202 (330)
-
T Consensus 340 f 340 (404)
T PF08886_consen 340 F 340 (404)
T ss_dssp E
T ss_pred E
Confidence 4
No 140
>PLN02527 aspartate carbamoyltransferase
Probab=27.54 E-value=2.2e+02 Score=27.24 Aligned_cols=74 Identities=9% Similarity=0.151 Sum_probs=47.6
Q ss_pred CCceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCC---CCCcC-----------CCccEEEEccCChhHHHHH
Q 047754 7 QPYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDK---PLTEQ-----------GPFDCIMHKLYGPDWTQQL 71 (330)
Q Consensus 7 ~~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~---~l~~q-----------~~~DvilhK~~~~~~~~~l 71 (330)
-.+.+|+..|.+ |-|-++ +|..++.++|-+++.++... .+... .=+|+|+.|...+.....+
T Consensus 37 L~gk~v~llF~epStRTR~---SFe~A~~~LGg~~i~l~~~~~~s~~~kgEs~~Dta~vls~y~D~iviR~~~~~~~~~~ 113 (306)
T PLN02527 37 LKGYLMATLFYEPSTRTRL---SFESAMKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGYSDIIVLRHFESGAARRA 113 (306)
T ss_pred CCCCEEEEEEcCCCchhHH---HHHHHHHHcCCCEEEeCCCCCccccCCCcCHHHHHHHHHHhCcEEEEECCChhHHHHH
Confidence 345566655544 555553 58888999999999998841 12110 1279999997665543333
Q ss_pred HHHHHhCCCceecChH
Q 047754 72 QQFSSRNPDVRIIDPP 87 (330)
Q Consensus 72 ~~~~~~~p~v~viDp~ 87 (330)
. ++..+||||=.
T Consensus 114 a----~~~~vPVINa~ 125 (306)
T PLN02527 114 A----ATAEIPVINAG 125 (306)
T ss_pred H----HhCCCCEEECC
Confidence 3 44579999954
No 141
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=27.50 E-value=1.1e+02 Score=30.46 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCcEEEEEEEEeCCCCCeeEEEEeeCCCC-CCCC-CCcHHHHHHHHHHHHHh
Q 047754 252 ELSRALREALGLNLFNFDLIRDAGERDGYLVIDINYLPG-YAKL-PGYETLLMDFFLNVAKS 311 (330)
Q Consensus 252 ~lA~~~~~~LGl~l~GvDvi~~~~~g~~~~ViEVN~fPg-~~g~-~~~~~~l~~~i~~~~~~ 311 (330)
....+-.+.----+..||+.-. |-.+.=||.|.||| |-.+ |.+-..-++++...+.+
T Consensus 14 WFr~~w~~~~~PfY~SVDlRna---GfKlAPVDtNLFPaGfNNL~~~~~plavqa~~~aiek 72 (404)
T PF08886_consen 14 WFRLQWQEHTPPFYSSVDLRNA---GFKLAPVDTNLFPAGFNNLNPEFLPLAVQAAMAAIEK 72 (404)
T ss_dssp HHHHHHHHH---SEEEEEEEE----SS-EEEEEEESS---GGGS-GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEEEeccc---CCccccccccCCcCcccCCCHHHHHHHHHHHHHHHHH
Confidence 3344444444455666997743 33589999999996 7777 55555555555555533
No 142
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=27.30 E-value=2.7e+02 Score=26.62 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=49.9
Q ss_pred CceEEEEEec-cCCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcC------------C-CccEEEEccCChhHHHHHHH
Q 047754 8 PYCKIGYVFA-PNKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQ------------G-PFDCIMHKLYGPDWTQQLQQ 73 (330)
Q Consensus 8 ~~~~vg~~~~-~~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q------------~-~~DvilhK~~~~~~~~~l~~ 73 (330)
.+.+++..|. ||-|-++ +|..++.++|-.+..++....-... . .+|+|..|...+.....+.+
T Consensus 44 ~gk~~~~lF~~pSTRTR~---SFe~A~~~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a~ 120 (305)
T PRK00856 44 RGKTVANLFFEPSTRTRL---SFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAMGADAIVIRHPQSGAARLLAE 120 (305)
T ss_pred CCcEEEEEeccCCcchHH---HHHHHHHHcCCcEEEeCCCcccCCCCcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHHH
Confidence 4566665544 4555553 5888999999999999987421111 1 27999999776665555544
Q ss_pred HHHhCCCceecChHH
Q 047754 74 FSSRNPDVRIIDPPE 88 (330)
Q Consensus 74 ~~~~~p~v~viDp~~ 88 (330)
+ ..+||||-..
T Consensus 121 ~----~~vPVINa~~ 131 (305)
T PRK00856 121 S----SDVPVINAGD 131 (305)
T ss_pred H----CCCCEEECCC
Confidence 4 4799999653
No 143
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=27.21 E-value=83 Score=24.63 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=35.0
Q ss_pred CcchHHHHHHHHCCCeEEE--eCCCCCCCcCCCccEEEEccCChhHHHHHHHHHHhC-CCceecChHH
Q 047754 24 VIQPSLITKATEQGIGLIR--IDPDKPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRN-PDVRIIDPPE 88 (330)
Q Consensus 24 ~~~~~l~~~~~~~Gi~~~~--id~~~~l~~q~~~DvilhK~~~~~~~~~l~~~~~~~-p~v~viDp~~ 88 (330)
+....+.++++++|+++.. .+...--.....+|+||.=-.-......+++..... -.+.+|||-+
T Consensus 18 ~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~~~~ 85 (95)
T TIGR00853 18 LLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVINGAQ 85 (95)
T ss_pred HHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeChhh
Confidence 4456788899999997543 222211111246899885322112234455555443 2477788754
No 144
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=24.78 E-value=47 Score=25.93 Aligned_cols=20 Identities=20% Similarity=0.619 Sum_probs=16.0
Q ss_pred EecccCC--CeEEEEEEECCeE
Q 047754 179 QEFVNHG--GIIFKVYVAGSSV 198 (330)
Q Consensus 179 QefI~h~--g~~~Kv~ViG~~v 198 (330)
+.|+||+ |-+|+|..+|+.=
T Consensus 3 E~YLNHPtFGlLy~Vc~~~e~~ 24 (88)
T PF12058_consen 3 ETYLNHPTFGLLYRVCPVDEGQ 24 (88)
T ss_dssp --EEEETTTEEEEEEEEECTTE
T ss_pred cccccCCccchheeeeeCCCcc
Confidence 6799997 8999999999854
No 145
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=23.64 E-value=2.8e+02 Score=28.08 Aligned_cols=74 Identities=12% Similarity=0.120 Sum_probs=46.5
Q ss_pred CCceEEEEEe-ccCCcccCcchHHHHHHHHCCCeEEEeC-CCCCCCcCC------------CccEEEEccCChhHHHHHH
Q 047754 7 QPYCKIGYVF-APNKEQTVIQPSLITKATEQGIGLIRID-PDKPLTEQG------------PFDCIMHKLYGPDWTQQLQ 72 (330)
Q Consensus 7 ~~~~~vg~~~-~~~k~~~~~~~~l~~~~~~~Gi~~~~id-~~~~l~~q~------------~~DvilhK~~~~~~~~~l~ 72 (330)
-.+.+++..| .||-+-.+ +|..++.++|-.++.++ +...-...| =+|+|+.|...+.....+.
T Consensus 124 L~GK~v~~lF~epSTRTR~---SFE~A~~~LGg~~i~l~~~~~ss~~kGESi~DTarvLs~y~D~IviR~~~~~~~~e~A 200 (429)
T PRK11891 124 LEGAVLGNLFFEASTRTRV---SFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGYVDALVIRHPEQGSVAEFA 200 (429)
T ss_pred cCCcEEEEEeccCCchhHH---HHHHHHHHcCCeEEEeCCccccCCCCCCCHHHHHHHHHHhCCEEEEeCCchhHHHHHH
Confidence 3456666544 44555553 58888999999999995 332111111 2799999976554333333
Q ss_pred HHHHhCCCceecChH
Q 047754 73 QFSSRNPDVRIIDPP 87 (330)
Q Consensus 73 ~~~~~~p~v~viDp~ 87 (330)
++.+++|||=.
T Consensus 201 ----~~s~vPVINAg 211 (429)
T PRK11891 201 ----RATNLPVINGG 211 (429)
T ss_pred ----HhCCCCEEECC
Confidence 34579999955
No 146
>TIGR02307 RNA_lig_RNL2 RNA ligase, Rnl2 family. Members of this family ligate (seal breaks in) RNA. Members so far include phage proteins that can counteract a host defense of cleavage of specific tRNA molecules, trypanosome ligases involved in RNA editing, but no prokaryotic host proteins.
Probab=23.26 E-value=5e+02 Score=25.27 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=26.1
Q ss_pred CCCeEEEecccCCCeEEEEEEECC-eEEEEEeec
Q 047754 173 EAPILLQEFVNHGGIIFKVYVAGS-SVKCVKRKS 205 (330)
Q Consensus 173 ~~p~vvQefI~h~g~~~Kv~ViG~-~v~~~~R~S 205 (330)
....++||=| .|.=|.+++-++ ++.+..|.+
T Consensus 24 ~~ewvatEKl--hGaNfsi~~~~~~~i~~akR~~ 55 (325)
T TIGR02307 24 LTEWVAREKI--HGTNFSIIIERDFKVTCAKRTG 55 (325)
T ss_pred CceEEEEEEe--cCcceEEEEeCCceEEEeeccc
Confidence 4589999999 588899999988 788888874
No 147
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=23.05 E-value=2.5e+02 Score=21.97 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=17.1
Q ss_pred hHHHHHHHHCCCeEEEeCCCCC
Q 047754 27 PSLITKATEQGIGLIRIDPDKP 48 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~ 48 (330)
.-+..++++.|++++.++.+.+
T Consensus 17 ~~~~~~l~~~G~~v~~l~~~~~ 38 (125)
T cd02065 17 NIVAIALRDNGFEVIDLGVDVP 38 (125)
T ss_pred HHHHHHHHHCCCEEEEcCCCCC
Confidence 4466778999999999987644
No 148
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=22.05 E-value=2.1e+02 Score=28.57 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=34.4
Q ss_pred CccEEEEccCChh-HHHHHHHHH-HhCCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE
Q 047754 54 PFDCIMHKLYGPD-WTQQLQQFS-SRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQA 121 (330)
Q Consensus 54 ~~DvilhK~~~~~-~~~~l~~~~-~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~ 121 (330)
..++|-|-.|+.. ..-+++.++ .-.|++-|+-|..-.... |-...+.+++ +|||+|.+.
T Consensus 105 ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~viaP~Rd~~~~--R~~~i~ya~~-------~gIpv~~~~ 165 (388)
T PF00764_consen 105 GADAVAHGCTGKGNDQVRFELSIRALAPELKVIAPWRDWEFS--REEEIEYAKK-------HGIPVPVTK 165 (388)
T ss_dssp T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-GGGHHHHH--HHHHHHHHHH-------TT----SS-
T ss_pred CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEecccchhhhh--HHHHHHHHHH-------cCCCCCCCC
Confidence 3477889887642 223455444 467999999999988877 8788888876 789888764
No 149
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=21.47 E-value=4.1e+02 Score=24.30 Aligned_cols=35 Identities=9% Similarity=0.165 Sum_probs=21.8
Q ss_pred EEEEeccCC-cccCc---chHHHHHHHHCCCeEEEeCCC
Q 047754 12 IGYVFAPNK-EQTVI---QPSLITKATEQGIGLIRIDPD 46 (330)
Q Consensus 12 vg~~~~~~k-~~~~~---~~~l~~~~~~~Gi~~~~id~~ 46 (330)
||+.++-.. .+.++ ++.+.+++++.|+++..++..
T Consensus 2 va~l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~ 40 (258)
T cd06353 2 VAFVYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENV 40 (258)
T ss_pred EEEEEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecC
Confidence 677775433 22332 233567777789999888766
No 150
>PRK05370 argininosuccinate synthase; Validated
Probab=20.80 E-value=2.7e+02 Score=28.28 Aligned_cols=83 Identities=14% Similarity=0.176 Sum_probs=53.7
Q ss_pred EEeccCCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCCCccEEEEccCChhH-HHHHHHH-HHhCCCceecChHHHHH
Q 047754 14 YVFAPNKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLYGPDW-TQQLQQF-SSRNPDVRIIDPPESIE 91 (330)
Q Consensus 14 ~~~~~~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~~DvilhK~~~~~~-~~~l~~~-~~~~p~v~viDp~~ai~ 91 (330)
|++..+=.+.+.-+.+++.|++.|. |+|-|=.|+.-. .-+++.+ ..-.|.+-||.|..-..
T Consensus 99 Y~l~t~LaRplia~~lv~~A~~~ga-----------------~aIAHG~TGKGNDQvRFE~~~~aL~P~l~ViaPwRd~~ 161 (447)
T PRK05370 99 YFNTTPLGRAVTGTMLVAAMKEDGV-----------------NIWGDGSTYKGNDIERFYRYGLLTNPELKIYKPWLDQD 161 (447)
T ss_pred ccCCCcchHHHHHHHHHHHHHHhCC-----------------cEEEEcCCCCCCchHHHHHHHHHhCCCCeEecchhhhh
Confidence 5555544445555666777766554 677788775321 1244433 34579999999997755
Q ss_pred Hhc---CHHHHHHHHHhhhhhhcCCCccCCcE
Q 047754 92 RLH---NRDSMLEVVSRLKIELNKEKVSVPNQ 120 (330)
Q Consensus 92 ~~~---dR~~~~~~L~~~~~~~~~~~i~~P~~ 120 (330)
..- .|-.....+++ +|||+|.+
T Consensus 162 ~~~~f~sR~e~i~Ya~~-------hGIpv~~~ 186 (447)
T PRK05370 162 FIDELGGRAEMSEFLIA-------HGFDYKMS 186 (447)
T ss_pred cccccCCHHHHHHHHHH-------cCCCCCcc
Confidence 432 78888888875 89998854
No 151
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=20.68 E-value=4.5e+02 Score=26.28 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=45.9
Q ss_pred EEEEEeccCCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccC-----ChhHHHHHHH
Q 047754 11 KIGYVFAPNKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLY-----GPDWTQQLQQ 73 (330)
Q Consensus 11 ~vg~~~~~~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~-----~~~~~~~l~~ 73 (330)
.+.+.+-||-|-++ +|..++.++|-+++.++....-...| =+|+|+.|.. .......+.+
T Consensus 62 ~~~lF~epSTRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kGEsl~DTarvLs~y~D~IviR~~~~~g~~~~~~~ela~ 138 (395)
T PRK07200 62 GISVFRDNSTRTRF---SYASACNLLGLEVQDLDEGKSQIAHGETVRETANMISFMADVIGIRDDMYIGKGNAYMREVGA 138 (395)
T ss_pred EEEEEcCCCchhHH---HHHHHHHHcCCCEEEcCCccccCCCCCCHHHHHHHHHHhCCEEEEecCcccccccHHHHHHHH
Confidence 33466777777664 68888999999999999875322222 2799999963 2233444445
Q ss_pred HHHhC------CCc-eecCh
Q 047754 74 FSSRN------PDV-RIIDP 86 (330)
Q Consensus 74 ~~~~~------p~v-~viDp 86 (330)
+..++ ..+ +|||=
T Consensus 139 ~~~~~~~~~~~~~~pPVINa 158 (395)
T PRK07200 139 AVDDGYKQGVLPQRPTLVNL 158 (395)
T ss_pred HhhhhcccccccCCCeEEEC
Confidence 54322 133 58883
Done!