Query 047754
Match_columns 330
No_of_seqs 153 out of 486
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:15:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q7d_A Inositol-tetrakisphosph 100.0 8.7E-61 3E-65 461.6 33.6 309 6-321 15-343 (346)
2 1z2n_X Inositol 1,3,4-trisphos 100.0 3.3E-37 1.1E-41 291.6 24.6 287 8-312 10-321 (324)
3 1i7n_A Synapsin II; synapse, p 100.0 8.7E-31 3E-35 248.3 22.8 243 31-314 33-308 (309)
4 3t7a_A Inositol pyrophosphate 100.0 1.5E-30 5.2E-35 243.1 19.4 280 5-314 3-315 (330)
5 2p0a_A Synapsin-3, synapsin II 100.0 1.4E-30 4.9E-35 249.9 19.7 238 37-315 55-326 (344)
6 1pk8_A RAT synapsin I; ATP bin 100.0 1.9E-29 6.6E-34 246.5 21.6 242 32-314 146-420 (422)
7 4eg0_A D-alanine--D-alanine li 99.9 4.3E-25 1.5E-29 208.8 22.8 269 1-297 5-292 (317)
8 1uc8_A LYSX, lysine biosynthes 99.9 8.9E-25 3.1E-29 200.7 22.9 229 26-294 13-259 (280)
9 3se7_A VANA; alpha-beta struct 99.9 2.6E-24 8.8E-29 206.2 18.7 232 29-295 27-316 (346)
10 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 1.7E-23 5.8E-28 195.1 22.9 253 11-294 4-280 (306)
11 3r5x_A D-alanine--D-alanine li 99.9 5.9E-24 2E-28 199.2 19.2 233 27-294 25-273 (307)
12 1ehi_A LMDDL2, D-alanine:D-lac 99.9 1E-21 3.5E-26 190.6 26.2 243 27-294 25-326 (377)
13 4fu0_A D-alanine--D-alanine li 99.9 1.1E-22 3.8E-27 195.8 18.6 229 54-309 97-347 (357)
14 3ln6_A Glutathione biosynthesi 99.9 1.6E-22 5.5E-27 211.8 21.0 241 25-305 429-746 (750)
15 2i87_A D-alanine-D-alanine lig 99.9 2E-22 6.8E-27 194.2 19.5 242 27-295 25-317 (364)
16 3k3p_A D-alanine--D-alanine li 99.9 1.4E-22 4.7E-27 197.5 18.1 239 29-294 61-346 (383)
17 3tqt_A D-alanine--D-alanine li 99.9 2.3E-22 7.7E-27 195.3 18.8 215 54-295 98-327 (372)
18 3i12_A D-alanine-D-alanine lig 99.9 3E-21 1E-25 186.4 23.3 210 54-295 98-326 (364)
19 3e5n_A D-alanine-D-alanine lig 99.9 8E-22 2.7E-26 192.2 19.1 259 7-294 20-344 (386)
20 1e4e_A Vancomycin/teicoplanin 99.9 1.1E-21 3.6E-26 187.5 19.6 233 27-294 25-315 (343)
21 2fb9_A D-alanine:D-alanine lig 99.9 5.5E-21 1.9E-25 181.4 20.6 206 53-295 75-296 (322)
22 2pvp_A D-alanine-D-alanine lig 99.9 4.2E-21 1.4E-25 185.9 19.2 207 54-294 107-330 (367)
23 3ln7_A Glutathione biosynthesi 99.9 4.2E-21 1.5E-25 200.9 20.2 244 25-305 434-752 (757)
24 3lwb_A D-alanine--D-alanine li 99.8 6.5E-21 2.2E-25 184.9 14.6 215 54-295 109-341 (373)
25 1gsa_A Glutathione synthetase; 99.8 4.7E-20 1.6E-24 171.8 17.2 234 26-307 21-311 (316)
26 3ax6_A Phosphoribosylaminoimid 99.8 2E-17 6.9E-22 159.5 26.9 226 26-294 13-267 (380)
27 3k5i_A Phosphoribosyl-aminoimi 99.8 1.5E-17 5.1E-22 162.6 21.1 246 6-295 21-298 (403)
28 3q2o_A Phosphoribosylaminoimid 99.8 5.3E-17 1.8E-21 157.4 24.2 240 8-294 13-284 (389)
29 3orq_A N5-carboxyaminoimidazol 99.8 5.4E-17 1.8E-21 157.2 22.3 226 26-294 24-280 (377)
30 3vot_A L-amino acid ligase, BL 99.8 3.9E-16 1.3E-20 152.8 26.6 228 27-296 18-298 (425)
31 4dim_A Phosphoribosylglycinami 99.7 9.7E-17 3.3E-21 155.6 22.0 230 26-296 19-287 (403)
32 3aw8_A PURK, phosphoribosylami 99.7 1.4E-16 4.7E-21 153.1 22.6 224 27-294 12-268 (369)
33 1kjq_A GART 2, phosphoribosylg 99.7 1.1E-16 3.7E-21 154.5 20.6 226 26-294 23-288 (391)
34 2z04_A Phosphoribosylaminoimid 99.7 2.1E-17 7.3E-22 158.4 15.0 222 26-295 13-261 (365)
35 2dwc_A PH0318, 433AA long hypo 99.7 1.5E-16 5.2E-21 156.1 20.8 228 26-294 31-301 (433)
36 4ffl_A PYLC; amino acid, biosy 99.7 3.2E-16 1.1E-20 150.2 20.7 210 27-291 14-247 (363)
37 3eth_A Phosphoribosylaminoimid 99.7 5.3E-16 1.8E-20 149.6 22.0 223 26-294 13-248 (355)
38 4e4t_A Phosphoribosylaminoimid 99.7 3.2E-16 1.1E-20 154.1 20.1 226 26-294 47-309 (419)
39 3ouz_A Biotin carboxylase; str 99.7 2.4E-15 8.1E-20 148.3 21.0 224 26-291 18-299 (446)
40 3df7_A Putative ATP-grAsp supe 99.7 1.8E-15 6.1E-20 142.7 18.4 179 53-292 68-252 (305)
41 2r85_A PURP protein PF1517; AT 99.7 5.9E-15 2E-19 138.7 21.9 228 26-291 13-290 (334)
42 1ulz_A Pyruvate carboxylase N- 99.7 8.9E-15 3E-19 144.2 21.5 225 27-292 15-295 (451)
43 2vpq_A Acetyl-COA carboxylase; 99.6 1.1E-14 3.6E-19 143.6 21.8 225 27-292 14-296 (451)
44 2dzd_A Pyruvate carboxylase; b 99.6 1.4E-14 4.8E-19 143.3 22.2 222 27-291 19-299 (461)
45 1a9x_A Carbamoyl phosphate syn 99.6 1.4E-14 4.7E-19 157.5 23.4 228 26-293 30-306 (1073)
46 2pn1_A Carbamoylphosphate synt 99.6 4.4E-15 1.5E-19 140.0 17.0 178 69-292 88-276 (331)
47 3lp8_A Phosphoribosylamine-gly 99.6 1.4E-14 4.9E-19 143.2 21.2 206 71-312 99-336 (442)
48 2w70_A Biotin carboxylase; lig 99.6 1.4E-14 4.6E-19 142.8 20.5 224 27-292 15-296 (449)
49 3vmm_A Alanine-anticapsin liga 99.6 2.8E-14 9.6E-19 142.4 22.6 193 55-290 103-332 (474)
50 2ip4_A PURD, phosphoribosylami 99.6 1.1E-14 3.8E-19 142.1 18.7 179 80-293 85-286 (417)
51 1a9x_A Carbamoyl phosphate syn 99.6 1.8E-14 6.2E-19 156.5 21.1 222 28-290 584-847 (1073)
52 2yw2_A Phosphoribosylamine--gl 99.6 1.3E-14 4.4E-19 141.8 17.1 202 54-293 62-292 (424)
53 3mjf_A Phosphoribosylamine--gl 99.6 1.6E-14 5.4E-19 142.4 17.4 208 71-311 83-320 (431)
54 2yrx_A Phosphoribosylglycinami 99.6 2.7E-14 9.1E-19 141.1 17.5 225 31-293 39-313 (451)
55 2xcl_A Phosphoribosylamine--gl 99.6 1.9E-14 6.4E-19 140.6 14.5 202 54-293 62-292 (422)
56 1vkz_A Phosphoribosylamine--gl 99.6 4.7E-14 1.6E-18 137.8 17.3 259 7-310 13-315 (412)
57 3glk_A Acetyl-COA carboxylase 99.6 8E-14 2.7E-18 141.3 19.0 182 71-292 140-368 (540)
58 3jrx_A Acetyl-COA carboxylase 99.6 1.2E-13 4E-18 141.2 19.6 180 72-291 157-383 (587)
59 3u9t_A MCC alpha, methylcroton 99.6 2.6E-14 9E-19 148.3 14.7 225 26-291 40-321 (675)
60 2qk4_A Trifunctional purine bi 99.5 1.1E-13 3.8E-18 136.5 16.7 185 73-293 106-319 (452)
61 3n6r_A Propionyl-COA carboxyla 99.5 2.8E-14 9.6E-19 148.3 12.0 182 71-292 91-296 (681)
62 3hbl_A Pyruvate carboxylase; T 99.5 4.3E-13 1.5E-17 146.2 21.8 222 27-291 17-297 (1150)
63 2qf7_A Pyruvate carboxylase pr 99.5 1.9E-13 6.6E-18 149.2 16.5 224 27-292 27-316 (1165)
64 1w96_A ACC, acetyl-coenzyme A 99.5 7.2E-13 2.5E-17 134.5 18.6 174 81-292 158-375 (554)
65 3va7_A KLLA0E08119P; carboxyla 99.4 8.3E-13 2.8E-17 144.6 16.2 224 27-290 44-323 (1236)
66 2cqy_A Propionyl-COA carboxyla 99.1 2.3E-12 7.8E-17 101.8 -3.8 91 90-195 3-108 (108)
67 2pbz_A Hypothetical protein; N 99.1 3.4E-09 1.2E-13 100.6 15.8 219 27-290 14-271 (320)
68 2r7k_A 5-formaminoimidazole-4- 99.0 1E-08 3.4E-13 98.9 18.5 224 27-290 30-316 (361)
69 3tig_A TTL protein; ATP-grAsp, 98.8 2.4E-07 8.3E-12 89.5 17.6 154 27-195 18-210 (380)
70 1wr2_A Hypothetical protein PH 98.5 1E-07 3.6E-12 86.1 7.0 93 93-197 19-130 (238)
71 3ufx_B Succinyl-COA synthetase 97.9 2.6E-05 9E-10 75.9 9.4 91 97-199 6-110 (397)
72 2nu8_B SCS-beta, succinyl-COA 97.9 3.7E-05 1.3E-09 74.6 9.4 93 94-198 3-117 (388)
73 2fp4_B Succinyl-COA ligase [GD 97.7 8E-05 2.7E-09 72.4 8.9 92 95-198 4-124 (395)
74 2io8_A Bifunctional glutathion 97.0 0.0076 2.6E-07 61.7 14.0 158 25-205 395-600 (619)
75 2vob_A Trypanothione synthetas 92.0 1.6 5.4E-05 44.8 12.9 156 27-205 413-615 (652)
76 3n6x_A Putative glutathionylsp 92.0 0.16 5.3E-06 50.3 5.2 133 54-199 269-440 (474)
77 3mwd_A ATP-citrate synthase; A 90.2 0.86 3E-05 44.4 8.5 83 115-198 26-128 (425)
78 3pff_A ATP-citrate synthase; p 81.0 2.6 9E-05 44.4 7.0 81 117-198 28-128 (829)
79 3nbm_A PTS system, lactose-spe 56.4 43 0.0015 25.8 7.4 83 21-103 18-103 (108)
80 1duv_G Octase-1, ornithine tra 50.3 44 0.0015 31.2 7.7 72 7-85 42-126 (333)
81 4a8t_A Putrescine carbamoyltra 47.8 53 0.0018 30.7 7.9 73 7-86 61-146 (339)
82 1vlv_A Otcase, ornithine carba 45.2 70 0.0024 29.7 8.2 71 8-85 57-140 (325)
83 2w37_A Ornithine carbamoyltran 43.8 58 0.002 30.7 7.5 72 7-85 65-149 (359)
84 1dxh_A Ornithine carbamoyltran 43.0 57 0.002 30.4 7.3 72 7-85 43-127 (335)
85 3tpf_A Otcase, ornithine carba 42.6 63 0.0021 29.7 7.4 71 8-85 35-118 (307)
86 4a8p_A Putrescine carbamoyltra 42.5 56 0.0019 30.7 7.2 73 7-86 39-124 (355)
87 3gd5_A Otcase, ornithine carba 40.9 59 0.002 30.2 6.9 71 8-85 47-130 (323)
88 1e2b_A Enzyme IIB-cellobiose; 40.3 24 0.00081 27.1 3.5 67 23-90 17-85 (106)
89 1oth_A Protein (ornithine tran 40.0 58 0.002 30.2 6.7 72 7-85 44-128 (321)
90 4h31_A Otcase, ornithine carba 38.0 69 0.0024 30.1 7.0 71 8-85 69-152 (358)
91 3r7f_A Aspartate carbamoyltran 37.5 77 0.0026 29.1 7.1 73 8-87 35-121 (304)
92 1pvv_A Otcase, ornithine carba 37.3 55 0.0019 30.2 6.1 72 7-85 44-128 (315)
93 4ep1_A Otcase, ornithine carba 36.2 67 0.0023 30.1 6.5 71 8-85 69-152 (340)
94 2ef0_A Ornithine carbamoyltran 35.0 66 0.0023 29.5 6.2 71 8-85 44-127 (301)
95 2i6u_A Otcase, ornithine carba 34.6 53 0.0018 30.2 5.5 71 8-85 38-121 (307)
96 4ekn_B Aspartate carbamoyltran 34.0 1.4E+02 0.0046 27.4 8.2 74 7-87 38-125 (306)
97 4amu_A Ornithine carbamoyltran 33.5 60 0.002 30.7 5.8 73 6-85 68-153 (365)
98 3k1t_A Glutamate--cysteine lig 32.8 80 0.0027 30.3 6.4 56 144-202 280-357 (432)
99 4f2g_A Otcase 1, ornithine car 30.9 76 0.0026 29.2 5.9 72 7-85 43-127 (309)
100 1js1_X Transcarbamylase; alpha 30.7 64 0.0022 29.9 5.4 75 8-85 35-140 (324)
101 1ml4_A Aspartate transcarbamoy 29.3 75 0.0026 29.2 5.6 73 8-87 43-129 (308)
102 3sds_A Ornithine carbamoyltran 28.6 1.5E+02 0.0053 27.6 7.7 73 7-86 64-149 (353)
103 1pg5_A Aspartate carbamoyltran 28.0 1E+02 0.0035 28.1 6.3 72 8-86 37-122 (299)
104 2xcz_A Possible ATLS1-like lig 27.6 1E+02 0.0036 23.1 5.4 63 247-309 17-88 (115)
105 3k1t_A Glutamate--cysteine lig 27.3 80 0.0027 30.3 5.4 57 253-312 33-91 (432)
106 3rht_A (gatase1)-like protein; 25.4 95 0.0033 27.7 5.4 62 27-88 20-89 (259)
107 2l2q_A PTS system, cellobiose- 25.3 2.2E+02 0.0074 21.4 7.6 79 23-104 18-100 (109)
108 3csu_A Protein (aspartate carb 23.9 1E+02 0.0036 28.3 5.5 74 8-87 40-128 (310)
109 3gyb_A Transcriptional regulat 22.6 1.2E+02 0.0042 25.7 5.6 52 7-59 3-65 (280)
110 3jy6_A Transcriptional regulat 22.2 1.8E+02 0.0062 24.6 6.6 41 6-46 4-46 (276)
111 3m9w_A D-xylose-binding peripl 22.1 1.9E+02 0.0066 25.0 6.9 40 9-48 2-43 (313)
112 3grf_A Ornithine carbamoyltran 21.4 1.3E+02 0.0043 28.0 5.5 71 8-85 43-127 (328)
113 3l6u_A ABC-type sugar transpor 21.4 1.7E+02 0.0057 25.0 6.2 42 6-47 5-48 (293)
114 3uug_A Multiple sugar-binding 21.2 1.6E+02 0.0055 25.7 6.2 65 8-87 2-68 (330)
115 3n6x_A Putative glutathionylsp 20.4 84 0.0029 30.8 4.2 24 262-287 141-164 (474)
116 2xko_C PIPX, global nitrogen r 20.3 27 0.00093 26.2 0.5 19 179-197 4-24 (89)
No 1
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=100.00 E-value=8.7e-61 Score=461.61 Aligned_cols=309 Identities=28% Similarity=0.516 Sum_probs=260.0
Q ss_pred CCCceEEEEEeccCCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCCCccEEEEccCC------------hhHHHHHHH
Q 047754 6 GQPYCKIGYVFAPNKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLYG------------PDWTQQLQQ 73 (330)
Q Consensus 6 ~~~~~~vg~~~~~~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~~DvilhK~~~------------~~~~~~l~~ 73 (330)
-+++++|||||++||.++|++++|+++++++|++++.||++.++.+|++||++|||+++ ..+++.+++
T Consensus 15 ~~~~~~vG~~l~~kk~~~~~~~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~ 94 (346)
T 2q7d_A 15 FLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQE 94 (346)
T ss_dssp GGTTCEEEEECCHHHHHHHTHHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCceEEEEEECcccchhhhHHHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999989999999999987 357888999
Q ss_pred HHHhCCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCc--hhhhhhHHHHHhcCCCcEEEeeCCC
Q 047754 74 FSSRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSET--ELVTRDMAIEELKLRFPLIAKPLEA 151 (330)
Q Consensus 74 ~~~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~--~~~~~~~~l~~~~l~fP~VvKp~~a 151 (330)
|..++||++||||+.++.+|.||+.|+++|++.......++|++|+|+++.+. ++... .+...+++||+|+||+.|
T Consensus 95 ~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~--~~~~~~lg~P~VvKP~~g 172 (346)
T 2q7d_A 95 YIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMR--LLEKNGLTFPFICKTRVA 172 (346)
T ss_dssp HHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHH--HHHHTTCCSSEEEECSBC
T ss_pred HHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHH--HHHhcCCCCCEEEEecCC
Confidence 99889999999999999999999999999998655556679999999999874 33322 344468999999999999
Q ss_pred CCCCCCcceEEEeChhhhhcCCCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCC
Q 047754 152 NGSDKSHQMYLIFDNEGLEVLEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSV 231 (330)
Q Consensus 152 ~Gs~~sh~m~iv~~~~~L~~l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~ 231 (330)
+||. +|+|+++++.++|..++.|+|+||||+|+|++|||||||+++++++|+|+|+|..+. +..++++|++. ++..
T Consensus 173 ~Gs~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~sl~~~~~~~--~~~~~~~f~s~-~~~~ 248 (346)
T 2q7d_A 173 HGTN-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGT--SDRESIFFNSH-NVSK 248 (346)
T ss_dssp SSTT-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEEEECCCCCC------CCCCEEEEGG-GTSS
T ss_pred Ccce-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEecCCCcCcCc--cccccccccce-eecc
Confidence 9996 999999999999999999999999999999999999999999999999999887653 23577788751 2222
Q ss_pred CCc-ccccc-----ccCCCCchHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeeEEEEeeCCCCCCCCCCcHHHHHHHH
Q 047754 232 DAD-EEVDL-----EKTEMPREGFVVELSRALREALGLNLFNFDLIRDAGERDGYLVIDINYLPGYAKLPGYETLLMDFF 305 (330)
Q Consensus 232 ~~~-~~~~~-----~~~~~~~~~~~~~lA~~~~~~LGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~~~~l~~~i 305 (330)
++. ....+ ..+.+++.++++++|.+++++||++++|||++++.++|+ +||+|||+||||+|++++++.++++|
T Consensus 249 ~g~~~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii~~~~~g~-~~VlEVN~~PG~~g~~~~~~~i~~~l 327 (346)
T 2q7d_A 249 PESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTGQ-HAVIDINAFPGYEGVSEFFTDLLNHI 327 (346)
T ss_dssp TTCCCGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECTTTCC-EEEEEEEESCCCTTCTTHHHHHHHHH
T ss_pred CCccccccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEEeecCCCC-EEEEEEeCCccccccchHHHHHHHHH
Confidence 111 00011 123455678999999999999999999999999864554 89999999999999999999999999
Q ss_pred HHHHHhccccccCCcc
Q 047754 306 LNVAKSKAVEEVTSGD 321 (330)
Q Consensus 306 ~~~~~~~~~~~~~~~~ 321 (330)
+++++++++++-.+||
T Consensus 328 ~~~~~~~~~~~~~~~~ 343 (346)
T 2q7d_A 328 ATVLQGQSTAMAATGD 343 (346)
T ss_dssp HHHHHHHHTTCBCCSB
T ss_pred HHHhhccCCCcccccc
Confidence 9999988887766665
No 2
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=100.00 E-value=3.3e-37 Score=291.57 Aligned_cols=287 Identities=22% Similarity=0.371 Sum_probs=221.2
Q ss_pred CceEEEEEeccCCcccCcchHHHHHHHHCCCeE--EEeCCCCCCCcCC-CccEEEEccCCh--hHHHHHHHHHHhCCCce
Q 047754 8 PYCKIGYVFAPNKEQTVIQPSLITKATEQGIGL--IRIDPDKPLTEQG-PFDCIMHKLYGP--DWTQQLQQFSSRNPDVR 82 (330)
Q Consensus 8 ~~~~vg~~~~~~k~~~~~~~~l~~~~~~~Gi~~--~~id~~~~l~~q~-~~DvilhK~~~~--~~~~~l~~~~~~~p~v~ 82 (330)
+..+||++..+++. ++ .++++++++|+++ +.+|++.++..++ ++|+++++++++ .+.+.++.+..+++|++
T Consensus 10 ~~m~i~il~~~~~~-s~---~l~~al~~~G~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~~~~l~~~~~~~~g~~ 85 (324)
T 1z2n_X 10 QTVSLFIWLPESKQ-KT---LFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRTHPVGKMADEMRKYEKDHPKVL 85 (324)
T ss_dssp CEEEEEEECCHHHH-HH---HBSSCCSEEEEEETTEEEEEEEESSCCSSCCSEEEECCSCSSSHHHHHHHHHHHHCTTSE
T ss_pred CcEEEEEEEchhhh-hh---hHHHHHHhcCcEEEEEEecCCCCccccCCCceEEEEeccchHHHHHHHHHHHHHhCCCCe
Confidence 44689999987655 33 6778889999999 9999976666666 899999999775 45667777777778999
Q ss_pred ecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEE
Q 047754 83 IIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYL 162 (330)
Q Consensus 83 viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i 162 (330)
++|+++++..++||+.+.++|++ .||++|+|..+.+.++... .+.+.+++||+|+||..|+|+.+++++.+
T Consensus 86 ~~~~~~~~~~~~dK~~~~~~l~~-------~gi~~P~~~~~~~~~~~~~--~~~~~~~~~P~vvKP~~g~g~~~s~gv~~ 156 (324)
T 1z2n_X 86 FLESSAIHDMMSSREEINALLIK-------NNIPIPNSFSVKSKEEVIQ--LLQSKQLILPFIVKPENAQGTFNAHQMKI 156 (324)
T ss_dssp EETCHHHHHHHTBHHHHHHHHHH-------TTCCCSCEEEESSHHHHHH--HHHTTCSCSSEEEEESBCSSSSGGGEEEE
T ss_pred EeCCHHHHHHHhCHHHHHHHHHH-------CCCCCCCEEEeCCHHHHHH--HHHHcCCCCCEEEeeCCCCCCccceeeEE
Confidence 99999999999999999999986 7999999999988765432 33334577999999999777667799999
Q ss_pred EeChhhhhcCCCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccC----------CcccC---
Q 047754 163 IFDNEGLEVLEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFS----------QISSN--- 229 (330)
Q Consensus 163 v~~~~~L~~l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~----------~~s~~--- 229 (330)
+.+.++|..++.++++||||++.|++++|+|+|+++..+.|++.+++..++..+ ..+|++. .++++
T Consensus 157 v~~~~~l~~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~~k~~~~ 235 (324)
T 1z2n_X 157 VLEQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKS-VDFNNQHLEDILSWPEGVIDKQDII 235 (324)
T ss_dssp ECSGGGGTTCCSSEEEEECCCCTTCEEEEEEETTEEEEEEECCCCCCCCSSCCE-EEEETTBGGGGGGSCTTSSCHHHHH
T ss_pred EeCHHHHhhcCCCEEEEEccCCCCcEEEEEEECCEEEEEEecCcccccCCCccc-eeeccccchhhhccccccccccccc
Confidence 999999998899999999999889999999999999988888877654332110 0112211 00110
Q ss_pred -------CCCCccccccccCCCCchHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeeEEEEeeCCCCCCCCCCcHHHHH
Q 047754 230 -------SVDADEEVDLEKTEMPREGFVVELSRALREALGLNLFNFDLIRDAGERDGYLVIDINYLPGYAKLPGYETLLM 302 (330)
Q Consensus 230 -------~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~~~~l~ 302 (330)
..+. ..+...+..+ +.++++++|.++.++||+.++|||++++..+|+ +||+|||.+|||++++++. .++
T Consensus 236 ~~~~~~~~~~~-~~~~~~~~~~-~~~~i~~~a~~~~~~lg~~~~~vD~~~~~~~g~-~~vlEvN~~Pg~~~~~~~~-~i~ 311 (324)
T 1z2n_X 236 ENSANRFGSKI-LEDPILLNLT-SEAEMRDLAYKVRCALGVQLCGIDFIKENEQGN-PLVVDVNVFPSYGGKVDFD-WFV 311 (324)
T ss_dssp HHHTTTTCCCB-CSCTTTTTSC-CHHHHHHHHHHHHHHHTCSEEEEEEECGGGCSS-CEEEEEEESCCTTSCBCHH-HHH
T ss_pred cccccchhhcc-ccCCccccCC-CHHHHHHHHHHHHHHhCCcEEeeEEEEEcCCCC-EEEEEEcCCCCcCCCCCHH-HHH
Confidence 0000 0011111222 236899999999999999999999998744564 7999999999999999988 899
Q ss_pred HHHHHHHHhc
Q 047754 303 DFFLNVAKSK 312 (330)
Q Consensus 303 ~~i~~~~~~~ 312 (330)
+++.+++.++
T Consensus 312 ~~l~~~~~~~ 321 (324)
T 1z2n_X 312 EKVALCYTEV 321 (324)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 9998887653
No 3
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.97 E-value=8.7e-31 Score=248.32 Aligned_cols=243 Identities=13% Similarity=0.144 Sum_probs=178.9
Q ss_pred HHHHHCCCeEEEeCCCCCCC-----cCC-------CccEEEEccCChh------HHHHHHHHHHhCCCceecChHHHHHH
Q 047754 31 TKATEQGIGLIRIDPDKPLT-----EQG-------PFDCIMHKLYGPD------WTQQLQQFSSRNPDVRIIDPPESIER 92 (330)
Q Consensus 31 ~~~~~~Gi~~~~id~~~~l~-----~q~-------~~DvilhK~~~~~------~~~~l~~~~~~~p~v~viDp~~ai~~ 92 (330)
+.++..++++..++...+.. +.| .+|++|.|..+.. ++..+. .++. .|++++|++++|.+
T Consensus 33 e~a~~~~i~l~~~~~~~~~v~~~~~~~g~~~~r~~~~D~vi~R~~~~~~~~~~~~r~vl~-~le~-~GvpviN~~~sI~~ 110 (309)
T 1i7n_A 33 EQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVLIRQHAFGMAENEDFRHLVI-GMQY-AGLPSINSLESIYN 110 (309)
T ss_dssp EEECGGGEEEEEETTSCEEEEEEECSSSSSEEEEECCSEEEECSCCCCSSTTCCCHHHHH-HHHH-TTCCEESCHHHHHH
T ss_pred HHHhhcCceEEEEcCCCceEEeehhhcCCccceeccCCEEEEecccccccccchHHHHHH-HHHH-CCccccCCHHHHHH
Confidence 34566778888887776422 122 5899999986542 343333 3333 49999999999999
Q ss_pred hcCH----HHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhh
Q 047754 93 LHNR----DSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEG 168 (330)
Q Consensus 93 ~~dR----~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~ 168 (330)
|+|| ..++++|.++.. .++|.|++....+... .+ ..++||+|+||.. || ++.||.++.+.++
T Consensus 111 ~~DK~~~~~~~~~~l~~~gi----~~~P~~~~~~~~~~~~-----~~--~~~g~PvVvK~~~--Gs-~G~GV~lv~~~~~ 176 (309)
T 1i7n_A 111 FCDKPWVFAQMVAIFKTLGG----EKFPLIEQTYYPNHRE-----ML--TLPTFPVVVKIGH--AH-SGMGKVKVENHYD 176 (309)
T ss_dssp TSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEESSGGG-----GS--SCCCSSEEEEESS--CS-TTTTEEEECSHHH
T ss_pred hCCccHHHHHHHHHHHhCCC----CCCCCCCEEeeCChhh-----hh--hccCCCEEEEeCC--CC-ceeCeEEECCHHH
Confidence 9999 567777776311 3458555544443222 12 4579999999998 45 8899999999988
Q ss_pred hhcC-------CCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCcccccccc
Q 047754 169 LEVL-------EAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEK 241 (330)
Q Consensus 169 L~~l-------~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~ 241 (330)
++++ +..+++||||+ .|+|+||+||||++.+++|++.. ++|++ |.+. +..++
T Consensus 177 ~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VvGg~v~a~~Rr~~~----g~wrt-----------N~~~-----~~~e~ 235 (309)
T 1i7n_A 177 FQDIASVVALTQTYATAEPFID-AKYDIRVQKIGNNYKAYMRTSIS----GNWKT-----------NTGS-----AMLEQ 235 (309)
T ss_dssp HHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEESSC----TTTSC-----------SCCC-----SSEEE
T ss_pred HHHHHHHHhccCCeEEEEeecC-CCceEEEEEECCEEEEEEEEcCC----CCCee-----------cCCc-----ceeee
Confidence 8653 67899999999 79999999999999999999753 24554 5431 11122
Q ss_pred CCCCchHHHHHHHHHHHHHh-CCcEEEEEEEEeCCCCCeeEEEEeeC--CCCCCCCCC-cHHHHHHHHHHHHHhccc
Q 047754 242 TEMPREGFVVELSRALREAL-GLNLFNFDLIRDAGERDGYLVIDINY--LPGYAKLPG-YETLLMDFFLNVAKSKAV 314 (330)
Q Consensus 242 ~~~~~~~~~~~lA~~~~~~L-Gl~l~GvDvi~~~~~g~~~~ViEVN~--fPg~~g~~~-~~~~l~~~i~~~~~~~~~ 314 (330)
. +++++.+++|.++++++ |++++|||++.+. +| +++|+|||. +||++|... ....+++++++.++++++
T Consensus 236 ~--~l~~e~~~la~~A~~a~gGldi~GVDll~~~-~g-~~~V~EVN~~~~P~~~~~~~~~~~~ia~~ii~~~~~~~~ 308 (309)
T 1i7n_A 236 I--AMSDRYKLWVDACSEMFGGLDICAVKAVHGK-DG-KDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQLLS 308 (309)
T ss_dssp E--CCCHHHHHHHHHHTTGGGCCSEEEEEEEEET-TS-CEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred c--CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CC-CEEEEEECCCCCCCccchhhhhHHHHHHHHHHHHHHHcC
Confidence 2 34677899999999999 8999999999885 45 378999999 999998855 667888888888876653
No 4
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=99.97 E-value=1.5e-30 Score=243.14 Aligned_cols=280 Identities=13% Similarity=0.152 Sum_probs=196.4
Q ss_pred CCCCceEEEEEeccCCcccCcchHHHHHHHHCCCeEEEeCCC------CCCCcCCCccEEEEccCChhHHHHHHHHHHhC
Q 047754 5 EGQPYCKIGYVFAPNKEQTVIQPSLITKATEQGIGLIRIDPD------KPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRN 78 (330)
Q Consensus 5 ~~~~~~~vg~~~~~~k~~~~~~~~l~~~~~~~Gi~~~~id~~------~~l~~q~~~DvilhK~~~~~~~~~l~~~~~~~ 78 (330)
+..+.++||.|--.+|.++=--+.+++-..+.| +|..|=+. .+.+.=+-.|++|...++---.....+|.+..
T Consensus 3 ~~~~~~~~gvcam~~k~~s~pm~~il~rl~~~~-~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~y~~lr 81 (330)
T 3t7a_A 3 FTERQIVVGICSMAKKSKSKPMKEILERISLFK-YITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKLR 81 (330)
T ss_dssp ---CCEEEEEESCHHHHTSHHHHHHHHHHTTST-TEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCCceEEEEEecccccccHHHHHHHHHhcccC-cEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHHHHHHh
Confidence 566789999999998877632234444333344 34444343 23333344699998887753345666776553
Q ss_pred CCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchh---------hhhhHHHHHhcCCCcEEEeeC
Q 047754 79 PDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETEL---------VTRDMAIEELKLRFPLIAKPL 149 (330)
Q Consensus 79 p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~---------~~~~~~l~~~~l~fP~VvKp~ 149 (330)
+.++||++.++..++||..++++|++ ++||+|+++++..... .++........+++|+|.||+
T Consensus 82 -~p~~INd~~~q~~~~DK~~~~~iL~~-------~gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPfVeKPv 153 (330)
T 3t7a_A 82 -NPFVINDLNMQYLIQDRREVYSILQA-------EGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPV 153 (330)
T ss_dssp -CCEESBCSTHHHHHTBHHHHHHHHHH-------TTCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSEEEEES
T ss_pred -CCceeCCHHHHHHHHHHHHHHHHHHH-------cCCCCCCEEEEeCCCCCccccceeccchhhhhccccccCCeeEccc
Confidence 68999999999999999999999997 8999999999986321 000000112457899999999
Q ss_pred CCC------------CCCCCcceEEEeChhhh------hcCCCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcch
Q 047754 150 EAN------------GSDKSHQMYLIFDNEGL------EVLEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISE 211 (330)
Q Consensus 150 ~a~------------Gs~~sh~m~iv~~~~~L------~~l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~ 211 (330)
.|+ |..+.+.+..+.|.++. ..-+..+++||||+++|+|+||||||++++++++|..|. ..
T Consensus 154 ~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am~R~sp~-~~ 232 (330)
T 3t7a_A 154 SAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPA-LD 232 (330)
T ss_dssp BTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEEEEECTT-SS
T ss_pred ccccCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCCCCceEEEEEECCEEEEEEEEeCCC-CC
Confidence 973 33234555555555432 112568999999999999999999999998777443342 12
Q ss_pred hhhhccCcccccCCcccCCCCCccccccccCCCCchHHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeeEEEEeeCCCCC
Q 047754 212 EKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRALREALGLNLFNFDLIRDAGERDGYLVIDINYLPGY 291 (330)
Q Consensus 212 ~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~ 291 (330)
|+|++ |.+.| +...+..+ +++.+++|.++++++|++++|||++++++ +.||+|||.||-.
T Consensus 233 G~~r~-----------N~~gG----~~~~~v~L--t~eek~iA~kaa~a~G~~v~GVDlLrs~~---~~~V~EVNg~~fv 292 (330)
T 3t7a_A 233 GKVER-----------DSEGK----EVRYPVIL--NAREKLIAWKVCLAFKQTVCGFDLLRANG---QSYVCDVNGFSFV 292 (330)
T ss_dssp CBCCB-----------CTTSC----BCCEECCC--CHHHHHHHHHHHHHTTBSEEEEEEEEETT---EEEEEEEEESCCC
T ss_pred CcEEE-----------cCCCC----ceeeeecC--CHHHHHHHHHHHHHhCCceEEEEEEEECC---ccEEEEeCCCccc
Confidence 34544 77644 22234444 45679999999999999999999999853 3589999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHhccc
Q 047754 292 AKLPGYETLLMDFFLNVAKSKAV 314 (330)
Q Consensus 292 ~g~~~~~~~l~~~i~~~~~~~~~ 314 (330)
++.+.||..++..|.+.+.+..+
T Consensus 293 k~~~~yyd~~a~il~~~~~~~~~ 315 (330)
T 3t7a_A 293 KNSMKYYDDCAKILGNIVMRELA 315 (330)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHHHhC
Confidence 99999999988888877655443
No 5
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=249.85 Aligned_cols=238 Identities=12% Similarity=0.161 Sum_probs=174.8
Q ss_pred CCeEEEeCCCCCCC-----cCC--------CccEEEEccCChh------HHHHHHHHHHhCCCceecChHHHHHHhcCH-
Q 047754 37 GIGLIRIDPDKPLT-----EQG--------PFDCIMHKLYGPD------WTQQLQQFSSRNPDVRIIDPPESIERLHNR- 96 (330)
Q Consensus 37 Gi~~~~id~~~~l~-----~q~--------~~DvilhK~~~~~------~~~~l~~~~~~~p~v~viDp~~ai~~~~dR- 96 (330)
++++..++...+.. ..| .+|++|.|..+.. ++. +.+.++. .|+++||++++|.+|.||
T Consensus 55 ~~~~~~~~~~~~~v~~~~~~~g~~~~~r~~~~D~vi~R~~~~~~~~~~~yr~-vl~~le~-~GvpviN~~~sI~~~~DK~ 132 (344)
T 2p0a_A 55 ELNLAAYVTGGCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRS-LVIGLQY-GGLPAVNSLYSVYNFCSKP 132 (344)
T ss_dssp GEEEEEETTSCEEEEEC----------CEECCSEEEECSCSEEGGGTEECHH-HHHHHHH-TTCCEESCHHHHHHTTCHH
T ss_pred ceEEEEEcCcccEEEeecccCCccccccCCCCCEEEEeccccccccchhHHH-HHHHHHH-CCceecCCHHHHHhhCCch
Confidence 38888888876421 122 5899999987632 343 3333333 499999999999999999
Q ss_pred ---HHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC-
Q 047754 97 ---DSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL- 172 (330)
Q Consensus 97 ---~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l- 172 (330)
..++++|.++.. .++|+|++....+.... + ..++||+|+||.. || ++.||.++.+.++++++
T Consensus 133 ~v~~~~l~~l~~~gi----~~~P~~~~t~~~~~~~~-----~--~~~g~PvVvK~~~--Gs-~G~GV~lve~~~~~~~~~ 198 (344)
T 2p0a_A 133 WVFSQLIKIFHSLGP----EKFPLVEQTFFPNHKPM-----V--TAPHFPVVVKLGH--AH-AGMGKIKVENQLDFQDIT 198 (344)
T ss_dssp HHHHHHHHHHHHHCT----TTSCBCCCEEESSSTTC-----C--CCSSSSEEEEESS--CC-TTTTEEEECSHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----CCCCCCCEEecCchhhh-----h--hccCCCEEEEeCC--CC-ceeCeEEECCHHHHHHHH
Confidence 677777776311 34585554444433221 2 4579999999998 45 88999999999888752
Q ss_pred ------CCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCc
Q 047754 173 ------EAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR 246 (330)
Q Consensus 173 ------~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~ 246 (330)
+..+++||||+ .|+|+||+|||+++.+++|++.. ++|++ |.+ + +..+.. ++
T Consensus 199 ~~~~~~~~~~~vQefI~-~g~DiRv~VVGg~vva~~R~~~~----g~wrt-----------N~~-~----~~~e~~--~l 255 (344)
T 2p0a_A 199 SVVAMAKTYATTEAFID-SKYDIRIQKIGSNYKAYMRTSIS----GNWKA-----------NTG-S----AMLEQV--AM 255 (344)
T ss_dssp HHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEEESS----SCSST-----------TSS-S----EEEEEE--CC
T ss_pred HHHhccCCeEEEEeccC-CCccEEEEEECCEEEEEEEecCC----CCCee-----------cCC-c----eEEEee--CC
Confidence 66899999999 79999999999999999998743 23444 543 1 211222 34
Q ss_pred hHHHHHHHHHHHHHh-CCcEEEEEEEEeCCCCCeeEEEEeeC--CCCCCCCCC-cHHHHHHHHHHHHHhcccc
Q 047754 247 EGFVVELSRALREAL-GLNLFNFDLIRDAGERDGYLVIDINY--LPGYAKLPG-YETLLMDFFLNVAKSKAVE 315 (330)
Q Consensus 247 ~~~~~~lA~~~~~~L-Gl~l~GvDvi~~~~~g~~~~ViEVN~--fPg~~g~~~-~~~~l~~~i~~~~~~~~~~ 315 (330)
+++.+++|.++++++ |++++|||++.+. +| +++|+|||. .|||+|... ....+.+++++.+.++...
T Consensus 256 ~~e~~~la~~Aa~a~gGldi~GVDll~~~-~G-~~~VlEVN~~~~P~~~~~~~~~~~~Ia~~ii~~i~~~~~~ 326 (344)
T 2p0a_A 256 TERYRLWVDSCSEMFGGLDICAVKAVHSK-DG-RDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPMP 326 (344)
T ss_dssp CHHHHHHHHHHTTGGGCCSEEEEEEEEET-TS-CEEEEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTCC--
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CC-CEEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHHhcCc
Confidence 677899999999999 8999999999885 45 378999999 999999865 5678888888888776543
No 6
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.97 E-value=1.9e-29 Score=246.52 Aligned_cols=242 Identities=12% Similarity=0.156 Sum_probs=176.3
Q ss_pred HHHHCCCeEEEeCCCCCCC-----cCC-------CccEEEEccCChh------HHHHHHHHHHhCCCceecChHHHHHHh
Q 047754 32 KATEQGIGLIRIDPDKPLT-----EQG-------PFDCIMHKLYGPD------WTQQLQQFSSRNPDVRIIDPPESIERL 93 (330)
Q Consensus 32 ~~~~~Gi~~~~id~~~~l~-----~q~-------~~DvilhK~~~~~------~~~~l~~~~~~~p~v~viDp~~ai~~~ 93 (330)
.++..+|++..++...+.. +.| .+|++|.|..+.. |+..+ ++++. .|+++||++++|.+|
T Consensus 146 qa~~~~i~l~~~~~~~~~v~~~~~~~g~~~~r~~~~DaviiR~~~~~~~~~~~yr~vl-r~lE~-~GvpviNs~~sI~~~ 223 (422)
T 1pk8_A 146 QAEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLV-IGLQY-AGIPSVNSLHSVYNF 223 (422)
T ss_dssp EECGGGEEEEEETTSCEEEEEEEEETTEEEEEEECCSEEEECSCSBCSSTTCBCHHHH-HHHHH-TTCCEESCHHHHHHT
T ss_pred HHhhcCceEEEEcCCceeEEeehhhcCCccccccCCCEEEEeccccccccchhHHHHH-HHHHH-CCccccCCHHHHHHh
Confidence 3455677777777665421 122 5899999986533 44333 33433 499999999999999
Q ss_pred cCH----HHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhh
Q 047754 94 HNR----DSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGL 169 (330)
Q Consensus 94 ~dR----~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L 169 (330)
+|| ..++++|.++.. .++|.|.+....+... .+ ..++||+|+||..| | +++||.++.+.+++
T Consensus 224 ~DK~~vf~~~l~ll~~~gi----~~iP~t~~t~~~~~~~-----~i--~~~g~PvVvKp~~G--S-~G~GV~lve~~~~l 289 (422)
T 1pk8_A 224 CDKPWVFAQMVRLHKKLGT----EEFPLIDQTFYPNHKE-----ML--SSTTYPVVVKMGHA--H-SGMGKVKVDNQHDF 289 (422)
T ss_dssp SSHHHHHHHHHHHHHHHCT----TTSCBCCCEEESSGGG-----CC--CCSSSSEEEEESSC--C-TTTTEEEECSHHHH
T ss_pred CCccHHHHHHHHHHHhCCC----CCCCCCceEecCchhh-----hh--hccCCCEEEEeCCC--C-ceeCeEEeCCHHHH
Confidence 999 566777765311 3448444444433222 12 45889999999984 5 88999999999888
Q ss_pred hcC-------CCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccC
Q 047754 170 EVL-------EAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKT 242 (330)
Q Consensus 170 ~~l-------~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~ 242 (330)
+++ +..+++||||+ .|+|+||+|||+++++++|++.. ++|++ |+. + +..+..
T Consensus 290 ~~ii~~~~~~~~~~~vQEfI~-~g~DIRv~VVGg~vva~~Rr~~~----g~Wrt-----------Nvg-~----g~~e~i 348 (422)
T 1pk8_A 290 QDIASVVALTKTYATAEPFID-AKYDVRVQKIGQNYKAYMRTSVS----GNWKT-----------NTG-S----AMLEQI 348 (422)
T ss_dssp HHHHHHHHHHTSCEEEEECCC-EEEEEEEEEETTEEEEEEEEESS----SCSST-----------TSS-C----EEEEEE
T ss_pred HHHHHHHhccCceEEEEeecC-CCceEEEEEECCEEEEEEEEcCC----CCcee-----------ccC-c----eeeeee
Confidence 753 67899999999 79999999999999999998743 24544 553 1 222222
Q ss_pred CCCchHHHHHHHHHHHHHh-CCcEEEEEEEEeCCCCCeeEEEEeeC--CCCCCCCCC-cHHHHHHHHHHHHHhccc
Q 047754 243 EMPREGFVVELSRALREAL-GLNLFNFDLIRDAGERDGYLVIDINY--LPGYAKLPG-YETLLMDFFLNVAKSKAV 314 (330)
Q Consensus 243 ~~~~~~~~~~lA~~~~~~L-Gl~l~GvDvi~~~~~g~~~~ViEVN~--fPg~~g~~~-~~~~l~~~i~~~~~~~~~ 314 (330)
+++++.+++|.++++++ |++++|||++.+. +| +++|+|||. .||++|... ....++++|++.++++.+
T Consensus 349 --~lt~e~~elA~kAaka~gGldiaGVDlL~s~-dG-~~~VlEVN~s~~P~~~g~~~~~~~~IA~~ii~~i~~~~~ 420 (422)
T 1pk8_A 349 --AMSDRYKLWVDTCSEIFGGLDICAVEALHGK-DG-RDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQALP 420 (422)
T ss_dssp --CCCHHHHHHHHHHTTGGGCCSEEEEEEEEET-TS-CEEEEEEECTTCCCCTTCHHHHHHHHHHHHHHHHHCC--
T ss_pred --CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CC-CEEEEEECCCCCCCccchhhhHHHHHHHHHHHHHHHhcc
Confidence 34677899999999999 8999999999885 45 378999999 999999865 668888888888877654
No 7
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.94 E-value=4.3e-25 Score=208.77 Aligned_cols=269 Identities=16% Similarity=0.159 Sum_probs=176.4
Q ss_pred CCCCCCCCceEEEEEecc-CCcccC---cchHHHHHHHHCCCeEEEeCCCCCCCc---CCCccEEEEccCChhH-HHHHH
Q 047754 1 MSNHEGQPYCKIGYVFAP-NKEQTV---IQPSLITKATEQGIGLIRIDPDKPLTE---QGPFDCIMHKLYGPDW-TQQLQ 72 (330)
Q Consensus 1 ~~~~~~~~~~~vg~~~~~-~k~~~~---~~~~l~~~~~~~Gi~~~~id~~~~l~~---q~~~DvilhK~~~~~~-~~~l~ 72 (330)
|++.......+|+..+-- +..+.. .-..+.+++++.|++++.||....... ...+|+++..+.+... ...++
T Consensus 5 ~~~~~~~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~~hg~~ge~~~~~ 84 (317)
T 4eg0_A 5 MSGIDPKRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHGGYGENGQIQ 84 (317)
T ss_dssp ---CCGGGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEECCCSGGGTSSHHH
T ss_pred cCccchhhcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEcCCCCCCchHHHH
Confidence 344333334567766642 332222 224578889999999999997643221 3578999988776421 12345
Q ss_pred HHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCC
Q 047754 73 QFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEA 151 (330)
Q Consensus 73 ~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a 151 (330)
..++. -|++++ ++++++..++||..+.++|++ .|||+|++.++.+.++......-....++||+|+||..+
T Consensus 85 ~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~~ 156 (317)
T 4eg0_A 85 GALDF-YGIRYTGSGVLGSALGLDKFRTKLVWQQ-------TGVPTPPFETVMRGDDYAARATDIVAKLGLPLFVKPASE 156 (317)
T ss_dssp HHHHH-HTCEESSCCHHHHHHHHCHHHHHHHHHH-------TTCCCCCEEEEETTSCHHHHHHHHHHHHCSCEEEEECC-
T ss_pred HHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHH-------CCcCCCCEEEEECchhHHHHHHHHHHhcCCCEEEEeCCC
Confidence 55544 379988 577999999999999999986 799999999998876543211001256899999999986
Q ss_pred CCCCCCcceEEEeChhhhhc-------CCCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccC
Q 047754 152 NGSDKSHQMYLIFDNEGLEV-------LEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFS 224 (330)
Q Consensus 152 ~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~ 224 (330)
+ +|.|+.++.+.++|.+ .+.++++||||++ |+++.|.|+|+++..+.+... ..++++|+
T Consensus 157 ~---~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~-G~E~~v~vl~~~~~~~~~i~~----------~~~~~~~~ 222 (317)
T 4eg0_A 157 G---SSVAVLKVKTADALPAALSEAATHDKIVIVEKSIEG-GGEYTACIAGDLDLPLIKIVP----------AGEFYDYH 222 (317)
T ss_dssp -------CCEEECSGGGHHHHHHHHTTTCSEEEEEECCCS-SEEEEEEEETTCCCCCEEEEC------------------
T ss_pred C---CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCC-CcEEEEEEECCcccceEEEee----------CCceechh
Confidence 4 4689999999988864 2568999999965 899999999997542222111 11234444
Q ss_pred CcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCCCCc
Q 047754 225 QISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKLPGY 297 (330)
Q Consensus 225 ~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~~ 297 (330)
. ++..+.. ....+..+++ .+.++++|.++.++||+. ++++|++++. +|+ +||+|||..||+++..-+
T Consensus 223 ~--k~~~g~~--~~~~P~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vD~~~~~-~g~-~~vlEiN~~pg~t~~s~~ 292 (317)
T 4eg0_A 223 A--KYVANDT--QYLIPCGLPAEQETELKRIARRAFDVLGCTDWGRADFMLDA-AGN-AYFLEVNTAPGMTDHSLP 292 (317)
T ss_dssp ---------C--EEESSCSSCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECT-TCC-EEEEEEESSCCCSTTSHH
T ss_pred h--cccCCCe--eEEcCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeC-CCC-EEEEEeeCCCCCCcccHH
Confidence 3 4433211 1112333332 467899999999999997 8889999985 454 799999999999987443
No 8
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.93 E-value=8.9e-25 Score=200.73 Aligned_cols=229 Identities=14% Similarity=0.206 Sum_probs=165.5
Q ss_pred chHHHHHHHHCCCeEEEeCCCCCCCc-------CCCccEEEEccCChhHHHHHHHHHHhCCCceecChHHHHHHhcCHHH
Q 047754 26 QPSLITKATEQGIGLIRIDPDKPLTE-------QGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDPPESIERLHNRDS 98 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~l~~-------q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~ 98 (330)
...++++++++|++++.+|++..... ...+|+++++.........+.+.+++. |+++++|++++..++||+.
T Consensus 13 ~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~dK~~ 91 (280)
T 1uc8_A 13 ERMLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTAL-GIPVVNRPEVIEACGDKWA 91 (280)
T ss_dssp HHHHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSHHHHHHHHHHHHHT-TCCEESCHHHHHHHHBHHH
T ss_pred HHHHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECCccchhhHHHHHHHHHC-CCceeCCHHHHHHhCCHHH
Confidence 36789999999999999998754311 236896666644322223455555554 7899999999999999999
Q ss_pred HHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC------
Q 047754 99 MLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL------ 172 (330)
Q Consensus 99 ~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l------ 172 (330)
+.++|.+ .|||+|++..+.+.++... .+ ..++||+|+||..++ +|+|+.++.+.++|.+.
T Consensus 92 ~~~~l~~-------~gi~~p~~~~~~~~~~~~~--~~--~~~~~p~vvKp~~g~---~~~gv~~v~~~~el~~~~~~~~~ 157 (280)
T 1uc8_A 92 TSVALAK-------AGLPQPKTALATDREEALR--LM--EAFGYPVVLKPVIGS---WGRLLAXXXXXXXXXXXXXXKEV 157 (280)
T ss_dssp HHHHHHH-------TTCCCCCEEEESSHHHHHH--HH--HHHCSSEEEECSBCC---BCSHHHHHHHHHC----------
T ss_pred HHHHHHH-------cCcCCCCeEeeCCHHHHHH--HH--HHhCCCEEEEECCCC---CcccceecccccccchhhhhHhh
Confidence 9999986 7999999999988765432 22 457899999999864 46888899988777541
Q ss_pred -----CCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCch
Q 047754 173 -----EAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPRE 247 (330)
Q Consensus 173 -----~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~ 247 (330)
+.++++||||+..+.+++++++|++++....+... +|.. +...+ +...+..+ .
T Consensus 158 ~~~~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~~~~~~~-----~~~~-----------~~~~g----~~~~p~~l--~ 215 (280)
T 1uc8_A 158 LGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRSA-----HWIT-----------NTARG----GQAENCPL--T 215 (280)
T ss_dssp --CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC----------------------------------CEECCC--C
T ss_pred hcccCCCcEEEEeccCCCCceEEEEEECCEEEEEEEEecC-----Cccc-----------cccCC----ccccCCCC--C
Confidence 46899999998778999999999998755433211 2221 22222 11122333 3
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 248 GFVVELSRALREALGLNLFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 248 ~~~~~lA~~~~~~LGl~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
++++++|.++.++||+.++|+|++++.+ | ++++|||..||+.++
T Consensus 216 ~~~~~~~~~~~~~lg~g~~~vD~~~~~~-g--~~~iEiN~r~g~~~~ 259 (280)
T 1uc8_A 216 EEVARLSVKAAEAVGGGVVAVDLFESER-G--LLVNEVNHTMEFKNS 259 (280)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEEEETT-E--EEEEEEETTCCCTTH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEEEeCC-C--eEEEEEeCCCCccch
Confidence 5789999999999999999999999853 3 799999999999875
No 9
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.92 E-value=2.6e-24 Score=206.21 Aligned_cols=232 Identities=18% Similarity=0.239 Sum_probs=164.4
Q ss_pred HHHHHHHCCCeEEEeCCCCCC--------------------------------------CcCCCccEEEEccCChhHH-H
Q 047754 29 LITKATEQGIGLIRIDPDKPL--------------------------------------TEQGPFDCIMHKLYGPDWT-Q 69 (330)
Q Consensus 29 l~~~~~~~Gi~~~~id~~~~l--------------------------------------~~q~~~DvilhK~~~~~~~-~ 69 (330)
..+++++.|+++++||++++- ..+.++|++++-+.+.... .
T Consensus 27 v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~lhG~~gedg 106 (346)
T 3se7_A 27 VATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSPDRSVHGLLVLEQGKYETIRLDLVLPVLHGKLGEDG 106 (346)
T ss_dssp HHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECCCTTTCEEEEEETTEEEEEECSEEEECCCSTTTTSS
T ss_pred HHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceeccCccCccceecccccccccCCCEEEEccCCCCCCCh
Confidence 566677889999999988542 0123579999888664321 2
Q ss_pred HHHHHHHhCCCceecCh-HHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEee
Q 047754 70 QLQQFSSRNPDVRIIDP-PESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKP 148 (330)
Q Consensus 70 ~l~~~~~~~p~v~viDp-~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp 148 (330)
.++.++.. .|++++.| +.++..++||..+.++|++ .|||+|++.++.+.+.. ....++||+|+||
T Consensus 107 ~iq~~le~-~gip~~g~~~~a~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~------~~~~lg~PvvvKP 172 (346)
T 3se7_A 107 AIQGLLEL-SGIPYVGCDIQSSALCMDKSLTYLVARS-------AGIATPNFWTVTADEKI------PTDQLTYPVFVKP 172 (346)
T ss_dssp HHHHHHHH-HCCCBSSCCHHHHHHHHSHHHHHHHHHH-------TTCBCCCEEEEETTSCC------CTTTCCSSEEEEE
T ss_pred HHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHH-------cCcCcCCEEEEcCcHHH------HHHhcCCCEEEEe
Confidence 45555544 37888775 8999999999999999986 79999999999876521 1267899999999
Q ss_pred CCCCCCCCCcceEEEeChhhhhc-------CCCCeEEEecccCCCeEEEEEEECCe----EEEEEeecCCCcchhhhhcc
Q 047754 149 LEANGSDKSHQMYLIFDNEGLEV-------LEAPILLQEFVNHGGIIFKVYVAGSS----VKCVKRKSLPDISEEKMKSL 217 (330)
Q Consensus 149 ~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQefI~h~g~~~Kv~ViG~~----v~~~~R~S~~~~~~~~~~~~ 217 (330)
..++ +|.|+.++.++++|.. .+.++++||||+ |+++.|.|+++. +....+... .
T Consensus 173 ~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~E~~v~vl~~~~~~~~~~~~e~~~----------~ 237 (346)
T 3se7_A 173 ARSG---SSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI--GTEIGCAVMGNGPELITGEVDQITL----------S 237 (346)
T ss_dssp SSCC---TTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEEETTEEEECCCEEECC----------C
T ss_pred CCCC---CCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC--CEEEEEEEEecCCCeEEEeeEEEec----------C
Confidence 9864 3689999999988865 357899999996 899999999883 322222211 1
Q ss_pred Cccccc----CCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 218 KGFLPF----SQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGL-NLFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 218 ~g~~~f----~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
.++|+| +. ++..+.. ....+..+++ .++++++|.++.++||+ .++++|++++. +|+ +|++|||..||
T Consensus 238 ~~~~d~~q~~~~--ky~~~~~--~~~~pa~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g~-~~vlEiN~rPG 311 (346)
T 3se7_A 238 HGFFKIHQESTP--ESGSDNS--AVTVPADISTTSRSLVQDTAKAVYRALGCRGLSRVDLFLTE-DGK-VVLNEVNTFPG 311 (346)
T ss_dssp ----------------CGGGS--CEESSCCCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECT-TSC-EEEEEEESSCC
T ss_pred CCCcCcccchhc--cccCCCe--eEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEeC-CCC-EEEEEEeCCCC
Confidence 245566 33 4433211 1122333433 45789999999999999 58889999985 454 79999999999
Q ss_pred CCCCC
Q 047754 291 YAKLP 295 (330)
Q Consensus 291 ~~g~~ 295 (330)
+++..
T Consensus 312 ~t~~s 316 (346)
T 3se7_A 312 MTSYS 316 (346)
T ss_dssp CSTTC
T ss_pred CCccc
Confidence 98774
No 10
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.92 E-value=1.7e-23 Score=195.08 Aligned_cols=253 Identities=16% Similarity=0.197 Sum_probs=173.6
Q ss_pred EEEEEeccC-CcccC---cchHHHHHHHHCCCeEEEeCCCCCCCc---CCCccEEEEccCChhH-HHHHHHHHHhCCCce
Q 047754 11 KIGYVFAPN-KEQTV---IQPSLITKATEQGIGLIRIDPDKPLTE---QGPFDCIMHKLYGPDW-TQQLQQFSSRNPDVR 82 (330)
Q Consensus 11 ~vg~~~~~~-k~~~~---~~~~l~~~~~~~Gi~~~~id~~~~l~~---q~~~DvilhK~~~~~~-~~~l~~~~~~~p~v~ 82 (330)
+||...... ..+.. ....++++++++|++++.+|.+..... ...+|+++.+...... ...++..++. -|++
T Consensus 4 ~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~e~~~~~~~~e~-~g~~ 82 (306)
T 1iow_A 4 KIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLEL-MGLP 82 (306)
T ss_dssp EEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCSTTTSSSHHHHHHHH-HTCC
T ss_pred EEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEcCCCCCCcchHHHHHHHH-cCCC
Confidence 466665432 22222 224688999999999999999843222 2478999988743210 0122333333 2788
Q ss_pred ec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhh-----hHHHHHhcCCCcEEEeeCCCCCCCC
Q 047754 83 II-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTR-----DMAIEELKLRFPLIAKPLEANGSDK 156 (330)
Q Consensus 83 vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~-----~~~l~~~~l~fP~VvKp~~a~Gs~~ 156 (330)
++ ++++++..++||+.+.++|++ .|||+|++..+.+. +... .... ...++||+|+||..++ +
T Consensus 83 ~~g~~~~~~~~~~dK~~~~~~l~~-------~gi~~p~~~~~~~~-~~~~~~~~~~~~~-~~~~~~p~vvKP~~g~---~ 150 (306)
T 1iow_A 83 YTGSGVMASALSMDKLRSKLLWQG-------AGLPVAPWVALTRA-EFEKGLSDKQLAE-ISALGLPVIVKPSREG---S 150 (306)
T ss_dssp BSSCCHHHHHHHHCHHHHHHHHHH-------TTCCBCCEEEEEHH-HHHHCCCTHHHHH-HHTTCSSEEEEETTCC---T
T ss_pred ccCCCHHHHHHHcCHHHHHHHHHH-------CCCCCCCeEEEchh-hhhccchhhhhhH-HhccCCCEEEEeCCCC---C
Confidence 76 789999999999999999986 79999999998765 3221 0001 2568999999999864 4
Q ss_pred CcceEEEeChhhhhc-------CCCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccC
Q 047754 157 SHQMYLIFDNEGLEV-------LEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSN 229 (330)
Q Consensus 157 sh~m~iv~~~~~L~~-------l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~ 229 (330)
|.|+.++.+.++|.. .+.++++||||+ |++++|.++|+++....+.... .++++|.. ++
T Consensus 151 ~~gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~--g~e~~v~~~~g~~~~~~~~~~~----------~~~~~~~~--~~ 216 (306)
T 1iow_A 151 SVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS--GPEFTVAILGEEILPSIRIQPS----------GTFYDYEA--KF 216 (306)
T ss_dssp TTTCEEESSGGGHHHHHHHHTTTCSEEEEEECCC--CCEEEEEEETTEECCCEEEECS----------SSSSCHHH--HH
T ss_pred CCCEEEeCCHHHHHHHHHHHHhhCCCEEEEeCcC--CEEEEEEEECCCccceEEEEeC----------CCeEchhh--ee
Confidence 689999999988864 257999999996 8999999999986533322111 12233321 23
Q ss_pred CCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 230 SVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 230 ~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
..+.. +...+..++. .+.++++|.++.++||+. ++++|++++. +|+ ++++|||..||+.+.
T Consensus 217 ~~g~~--~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g~-~~~iEiN~rpg~~~~ 280 (306)
T 1iow_A 217 LSDET--QYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS-DGQ-FYLLEANTSPGMTSH 280 (306)
T ss_dssp TCSCC--EEESSCCCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECT-TSC-EEEEEEESSCCCSTT
T ss_pred cCCCe--eEEcCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEcC-CCC-EEEEEecCCCCCCCC
Confidence 22211 1112222322 457889999999999997 8999999985 454 799999999999875
No 11
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.92 E-value=5.9e-24 Score=199.16 Aligned_cols=233 Identities=15% Similarity=0.210 Sum_probs=167.3
Q ss_pred hHHHHHHHHCCCeEEEeCCCCC---CCcCCCccEEEEccCChhHH-HHHHHHHHhCCCceecCh-HHHHHHhcCHHHHHH
Q 047754 27 PSLITKATEQGIGLIRIDPDKP---LTEQGPFDCIMHKLYGPDWT-QQLQQFSSRNPDVRIIDP-PESIERLHNRDSMLE 101 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~---l~~q~~~DvilhK~~~~~~~-~~l~~~~~~~p~v~viDp-~~ai~~~~dR~~~~~ 101 (330)
..+.+++++.|++++.+|++.. +.....+|+++..+.+.... ..++.+++. .|++++.| ++++..++||..+.+
T Consensus 25 ~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~-~gi~~~g~~~~~~~~~~dK~~~~~ 103 (307)
T 3r5x_A 25 NEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGEDGTVQGTLES-LGIPYSGSNMLSSGICMDKNISKK 103 (307)
T ss_dssp HHHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHH-HTCCBSSSCHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEeCCCCCCcHHHHHHHHHH-cCCCeeCcCHHHHHHHcCHHHHHH
Confidence 4567888899999999999842 22335799999998764321 233444433 37999865 999999999999999
Q ss_pred HHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC-------CC
Q 047754 102 VVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL-------EA 174 (330)
Q Consensus 102 ~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------~~ 174 (330)
+|.+ .|||+|++.++.+.+.... .. ...++||+|+||..++ +|+|+.++.+.++|.+. +.
T Consensus 104 ~l~~-------~Gip~p~~~~~~~~~~~~~--~~-~~~~~~P~vvKP~~~~---~s~Gv~~v~~~~el~~~~~~~~~~~~ 170 (307)
T 3r5x_A 104 ILRY-------EGIETPDWIELTKMEDLNF--DE-LDKLGFPLVVKPNSGG---SSVGVKIVYDKDELISMLETVFEWDS 170 (307)
T ss_dssp HHHH-------TTCCCCCEEEEESSSCCCH--HH-HHHHCSSEEEEECC-------CCCEEECSHHHHHHHHHHHHHHCS
T ss_pred HHHH-------CCCCCCCEEEEeChhhhhH--HH-HHhcCCCEEEEeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCC
Confidence 9986 7999999999988655431 11 2568999999999864 46899999999888753 67
Q ss_pred CeEEEecccCCCeEEEEEEECCeEEEE-EeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCc--hHHHH
Q 047754 175 PILLQEFVNHGGIIFKVYVAGSSVKCV-KRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVV 251 (330)
Q Consensus 175 p~vvQefI~h~g~~~Kv~ViG~~v~~~-~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~ 251 (330)
++++||||+ |+++.|.|+|+++... .+.. ..++++|.. ++..++ ....+..+++ .+.++
T Consensus 171 ~~lvee~i~--G~e~~v~v~~g~~~~~~~~~~-----------~~~~~~~~~--~~~~~g---~~~~p~~l~~~~~~~i~ 232 (307)
T 3r5x_A 171 EVVIEKYIK--GEEITCSIFDGKQLPIISIRH-----------AAEFFDYNA--KYDDAS---TIEEVIELPAELKERVN 232 (307)
T ss_dssp EEEEEECCC--SEEEEEEEETTEECCCEEEEE-----------EEEEETTEE--EEEEEE---EEEEECCCCHHHHHHHH
T ss_pred CEEEECCcC--CEEEEEEEECCEEeeEEEEEc-----------CCcccChhh--cCCCCC---CeEecCCCCHHHHHHHH
Confidence 999999996 8999999999987422 1111 012233332 331110 0011233333 34789
Q ss_pred HHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 252 ELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 252 ~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
++|.++.++||+. ++++|+++++ | .+||+|||..||+.+.
T Consensus 233 ~~a~~~~~~lg~~G~~~vD~~~~~--g-~~~vlEiN~rpg~~~~ 273 (307)
T 3r5x_A 233 KASLACYKALKCSVYARVDMMVKD--G-IPYVMEVNTLPGMTQA 273 (307)
T ss_dssp HHHHHHHHHTTCCSEEEEEEEEET--T-EEEEEEEESSCCCSTT
T ss_pred HHHHHHHHHhCCCceEEEEEEEEC--C-eEEEEEEcCCCCCCcc
Confidence 9999999999999 8899999983 4 4899999999999876
No 12
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.90 E-value=1e-21 Score=190.55 Aligned_cols=243 Identities=16% Similarity=0.151 Sum_probs=170.5
Q ss_pred hHHHHHH-HHCCCeEEEeCCCCCC--------------------C--------------------cCCCccEEEEccCCh
Q 047754 27 PSLITKA-TEQGIGLIRIDPDKPL--------------------T--------------------EQGPFDCIMHKLYGP 65 (330)
Q Consensus 27 ~~l~~~~-~~~Gi~~~~id~~~~l--------------------~--------------------~q~~~DvilhK~~~~ 65 (330)
..+.++. ++.|+++++||++... . +...+|+++..+.+.
T Consensus 25 ~~v~~al~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~ 104 (377)
T 1ehi_A 25 QNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDEQPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGN 104 (377)
T ss_dssp HHHHHHHHHHSSEEEEEEEECTTSCBCCHHHHHHHHTTCCHHHHHHHHHTSCCTTCTTCTTGGGGTTCCCSEEEEECCST
T ss_pred HHHHHHhCcccCcEEEEEEEcCCCCEEecccccccccccchhhhccccccccccccccCcchhhccccCCCEEEEecCCC
Confidence 4467888 8999999999876411 0 023689999887553
Q ss_pred hHH-HHHHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhh-hhHHHHHhcCCC
Q 047754 66 DWT-QQLQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVT-RDMAIEELKLRF 142 (330)
Q Consensus 66 ~~~-~~l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~-~~~~l~~~~l~f 142 (330)
... ..++..++. -|++++ ++++++..++||..+.++|++ .|||+|++.++.+.++.. .+..+ ...++|
T Consensus 105 ~gedg~~~~lle~-~gip~~G~~~~a~~~~~DK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~~~~~~-~~~~g~ 175 (377)
T 1ehi_A 105 LGEDGTLQGLFKL-LDKPYVGAPLRGHAVSFDKALTKELLTV-------NGIRNTKYIVVDPESANNWSWDKI-VAELGN 175 (377)
T ss_dssp TTSSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHT-------TTCCCCCEEEECTTGGGGCCHHHH-HHHHCS
T ss_pred CCcCHHHHHHHHH-cCCCEeCcCHHHHHHHcCHHHHHHHHHH-------cCCCCCCEEEEeccccchHHHHHH-HHhcCC
Confidence 211 234555544 489988 999999999999999999986 799999999998764411 01122 245899
Q ss_pred cEEEeeCCCCCCCCCcceEEEeChhhhhc-------CCCCeEEEecccCCC-eEEEEEEECCe---EEEEEeecCCCcch
Q 047754 143 PLIAKPLEANGSDKSHQMYLIFDNEGLEV-------LEAPILLQEFVNHGG-IIFKVYVAGSS---VKCVKRKSLPDISE 211 (330)
Q Consensus 143 P~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQefI~h~g-~~~Kv~ViG~~---v~~~~R~S~~~~~~ 211 (330)
|+|+||..++ +|.|+.++.+.++|.. .+.++++||||+ | +++.|.|+|+. +....+......
T Consensus 176 PvvVKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~~~~~~ei~~~~~-- 248 (377)
T 1ehi_A 176 IVFVKAANQG---SSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN--GARELEVGVIGNDQPLVSEIGAHTVPNQ-- 248 (377)
T ss_dssp CEEEEESSCC---TTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--CSCEEEEEEEESSSCEEEEEEEEECTTS--
T ss_pred CEEEEeCCCC---CCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC--CCceEEEEEEcCCCcEEEeeEEEEecCC--
Confidence 9999999864 3689999999988874 356999999995 7 99999999984 443332211100
Q ss_pred hhhhccCcccccCCcccCCCC-CccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeC
Q 047754 212 EKMKSLKGFLPFSQISSNSVD-ADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINY 287 (330)
Q Consensus 212 ~~~~~~~g~~~f~~~s~~~~~-~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~ 287 (330)
....++++|+. ++..+ .. ....+..+++ .+.++++|.++.++||+. +++||++++. +|+ +||+|||.
T Consensus 249 ---~~~~~~~d~~~--k~~~g~~~--~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~-~g~-~~vlEiN~ 319 (377)
T 1ehi_A 249 ---GSGDGWYDYNN--KFVDNSAV--HFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDFLLDE-NNV-PYLGEPNT 319 (377)
T ss_dssp ---SSSSCCCCHHH--HTTCCTTC--EEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCC-EEEEEEES
T ss_pred ---CCcCceeCHHh--cccCCCCe--eEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEeC-CCC-EEEEEEeC
Confidence 00123455543 44322 11 1122333433 467899999999999998 8889999974 454 79999999
Q ss_pred CCCCCCC
Q 047754 288 LPGYAKL 294 (330)
Q Consensus 288 fPg~~g~ 294 (330)
.||+.+.
T Consensus 320 rpg~t~~ 326 (377)
T 1ehi_A 320 LPGFTNM 326 (377)
T ss_dssp SCCCSTT
T ss_pred CCCCCcc
Confidence 9998876
No 13
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.90 E-value=1.1e-22 Score=195.82 Aligned_cols=229 Identities=17% Similarity=0.294 Sum_probs=159.2
Q ss_pred CccEEEEccCChhHH-HHHHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhh
Q 047754 54 PFDCIMHKLYGPDWT-QQLQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTR 131 (330)
Q Consensus 54 ~~DvilhK~~~~~~~-~~l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~ 131 (330)
.+|+++.=+.+.... ..++.+++. -|++.+ -++.++..++||..+.++|++ .|||+|++..+.+.+....
T Consensus 97 ~~D~vf~~l~G~~gEdg~~q~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~ 168 (357)
T 4fu0_A 97 KVDLVFPVLHGKNGEDGTLQGIFEL-AGIPVVGCDTLSSALCMDKDRAHKLVSL-------AGISVPKSVTFKRFNEEAA 168 (357)
T ss_dssp ECSEEEECCCSHHHHSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHH-------TTCBCCCEEEEEGGGHHHH
T ss_pred CCCEEEECCcCccccCHHHHHHHHH-CCCcEECcCHHHHHHHhCHHHHHHHHHH-------CCCCCCCEEeecCCChHHH
Confidence 356766555443211 245666655 378877 678999999999999999986 7999999999987655433
Q ss_pred hHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhc-------CCCCeEEEecccCCCeEEEEEEECCeEEEEEee
Q 047754 132 DMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEV-------LEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRK 204 (330)
Q Consensus 132 ~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~ 204 (330)
+... ...++||+|+||..++ +|.||.++.+.++|.+ .+.++++|+|| .|+.+.|.|+|+....+.
T Consensus 169 ~~~~-~~~lg~PvvVKP~~gg---~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i--~G~e~~v~vl~~~~~~~~-- 240 (357)
T 4fu0_A 169 MKEI-EANLTYPLFIKPVRAG---SSFGITKVIEKQELDAAIELAFEHDTEVIVEETI--NGFEVGCAVLGIDELIVG-- 240 (357)
T ss_dssp HHHH-HHHCCSSEEEEETTCS---SSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECC--CSEEEEEEEEESSSEEEC--
T ss_pred HHHH-HHhcCCCEEEEECCCC---CCCceEEeccHHhHHHHHHHHhccCCeEEEEEec--CCEEEEEEEEecCCceEE--
Confidence 2222 3679999999998853 3689999999999875 36789999999 599999999988643221
Q ss_pred cCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeE
Q 047754 205 SLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYL 281 (330)
Q Consensus 205 S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ 281 (330)
+- .+.....++++|.. ++..+... ...++.+++ .++++++|.++.++||+. +++||++++. +|+ +|
T Consensus 241 --~v---~~~~~~~~~~d~~~--k~~~~~~~--~~~pa~l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf~~~~-dg~-~~ 309 (357)
T 4fu0_A 241 --RV---DEIELSSGFFDYTE--KYTLKSSK--IYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTP-SGE-IV 309 (357)
T ss_dssp --CC---EEEEECHHHHTSCS--BCSSCCEE--EESSCSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCC-EE
T ss_pred --EE---EEEEcccccccccc--cccCCCce--EecCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEeC-CCC-EE
Confidence 10 01111123445554 44332211 112333433 467899999999999996 7779999985 564 79
Q ss_pred EEEeeCCCCCCCCCCc----------HHHHHHHHHHHH
Q 047754 282 VIDINYLPGYAKLPGY----------ETLLMDFFLNVA 309 (330)
Q Consensus 282 ViEVN~fPg~~g~~~~----------~~~l~~~i~~~~ 309 (330)
|+|||..|||+...-+ +..|++.|+++.
T Consensus 310 vlEvNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a 347 (357)
T 4fu0_A 310 FNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLIGLY 347 (357)
T ss_dssp EEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCcccHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 9999999999876332 345666666554
No 14
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.89 E-value=1.6e-22 Score=211.77 Aligned_cols=241 Identities=13% Similarity=0.191 Sum_probs=170.7
Q ss_pred cchHHHHHHHHCCCeEEEeCCCCCCCcC---CCccEEEEccCChhHHHHHHHHHHhCCCceecChHHHHHHhcCHHHHHH
Q 047754 25 IQPSLITKATEQGIGLIRIDPDKPLTEQ---GPFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDPPESIERLHNRDSMLE 101 (330)
Q Consensus 25 ~~~~l~~~~~~~Gi~~~~id~~~~l~~q---~~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~~~~ 101 (330)
..+.++++|+++|++++.||++.++... ..+|++.. ..+.-.++..++..+.||..+.+
T Consensus 429 S~~~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~------------------g~itg~~~~~a~~~~~DK~~tk~ 490 (750)
T 3ln6_A 429 STQLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKN------------------GNMTSKDNYIVPLAMANKVVTKK 490 (750)
T ss_dssp HHHHHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEET------------------TTBCTTSCTHHHHHTTTSHHHHH
T ss_pred cHHHHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEec------------------CCeeCCCHHHHHHHHhCHHHHHH
Confidence 3467999999999999999998655431 12233221 13456678889999999999999
Q ss_pred HHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEe---Chhhhhc-------
Q 047754 102 VVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIF---DNEGLEV------- 171 (330)
Q Consensus 102 ~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~---~~~~L~~------- 171 (330)
+|++ +|||+|++.++.+.++... .....++||+|+||..++ +|.||.++. +.+++..
T Consensus 491 lL~~-------~GIPvP~~~~~~~~~ea~~---~~~~~~g~PvVVKP~~G~---~G~GV~iv~~~~s~eel~~a~~~~~~ 557 (750)
T 3ln6_A 491 ILDE-------KHFPTPFGDEFTDRKEALN---YFSQIQDKPIVVKPKSTN---FGLGISIFKTSANLASYEKAIDIAFT 557 (750)
T ss_dssp HHHH-------TTCCCCCCCCEETTTTHHH---HHHHSSSSCEEEEETTCC---SSSSCEEESSCCCHHHHHHHHHHHHH
T ss_pred HHHH-------CCcCCCCEEEECCHHHHHH---HHHHhcCCcEEEEeCCCC---CCCCEEEEeCCCCHHHHHHHHHHHHh
Confidence 9986 8999999999988766532 222568999999998753 468999998 7777754
Q ss_pred CCCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhh------h---------h---------------------
Q 047754 172 LEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEK------M---------K--------------------- 215 (330)
Q Consensus 172 l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~------~---------~--------------------- 215 (330)
...++++||||+ |++|+|+|+||+++.++++..+.+..++ + .
T Consensus 558 ~~~~vlVEefI~--G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l 635 (750)
T 3ln6_A 558 EDSAILVEEYIE--GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLML 635 (750)
T ss_dssp HCSEEEEEECCC--SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHH
T ss_pred hCCcEEEEeccC--CCEEEEEEECCEEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHH
Confidence 267899999996 8999999999999977755434321110 0 0
Q ss_pred ----------ccCcc---cccCCcccCCCCCccccccccCCCCchHHHHHHHHHHHHHhCCcEEEEEEEEeC-------C
Q 047754 216 ----------SLKGF---LPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRALREALGLNLFNFDLIRDA-------G 275 (330)
Q Consensus 216 ----------~~~g~---~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LGl~l~GvDvi~~~-------~ 275 (330)
...|. +.+. +|++.|+. .....-...+.++++|.++++++|+.+.|||++.++ .
T Consensus 636 ~~~g~~~~~V~~~Ge~v~L~~~--~Nls~Gg~----~~d~td~i~p~~~~~a~~aa~~igl~~~GvDli~~di~~~~~~~ 709 (750)
T 3ln6_A 636 EQQGYTVNSIPPEGTKIELRRN--SNISTGGD----SIDVTNTMDPTYKQLAAEMAEAMGAWVCGVDLIIPNATQAYSKD 709 (750)
T ss_dssp HHTTCCSSCCCCTTCEEESCSS--CCTTTTCE----EEECTTTSCHHHHHHHHHHHHHHTCSSCEEEEEESCSSSCCCTT
T ss_pred HHcCCCccccCCCCCEEEEeec--ccccCCCc----eeeccccCCHHHHHHHHHHHHHhCCCeEEEEEEecCcccccccc
Confidence 00011 1122 26666533 222211125678999999999999999999999985 1
Q ss_pred CCCeeEEEEeeCCCCCCCC--------CCcHHHHHHHH
Q 047754 276 ERDGYLVIDINYLPGYAKL--------PGYETLLMDFF 305 (330)
Q Consensus 276 ~g~~~~ViEVN~fPg~~g~--------~~~~~~l~~~i 305 (330)
.+ .++|||||..||+.+. .++...+++++
T Consensus 710 ~~-~~~iiEvN~~pg~~~h~~p~~g~~~~v~~~ii~~l 746 (750)
T 3ln6_A 710 KK-NATCIELNFNPLMYMHTYCQEGPGQSITPRILAKL 746 (750)
T ss_dssp TT-CCEEEEEESSCCCHHHHSCSBSCCCCCHHHHHHHH
T ss_pred CC-CeEEEEEcCCcchhhhcCcccCCCCcHHHHHHHHh
Confidence 23 4799999999998766 23566666654
No 15
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.89 E-value=2e-22 Score=194.19 Aligned_cols=242 Identities=13% Similarity=0.146 Sum_probs=161.2
Q ss_pred hHHHHHHHHCCCeEEEeCCCCC------------------CC-----------------cCCCccEEEEccCChhH-HHH
Q 047754 27 PSLITKATEQGIGLIRIDPDKP------------------LT-----------------EQGPFDCIMHKLYGPDW-TQQ 70 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~------------------l~-----------------~q~~~DvilhK~~~~~~-~~~ 70 (330)
..+++++++.|++++.||.+.+ +. ....+|+++..+.+... ...
T Consensus 25 ~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~ed~~ 104 (364)
T 2i87_A 25 QNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDELHLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGT 104 (364)
T ss_dssp HHHHHTSCTTTEEEEEEEECTTCCEEEECCCCSCCCSGGGSCGGGSEEECSSGGGGBCTTSSBCSEEEEECCCSSSCTTH
T ss_pred HHHHHHHhhcCCEEEEEEEcCCCCEEeccccccccccchhhcccccccccccccccccccccCCCEEEEeCCCCCCcCHH
Confidence 4467778889999999986532 11 12357999988743210 012
Q ss_pred HHHHHHhCCCceecCh-HHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhh----hhhHHHHHhcCCCcEE
Q 047754 71 LQQFSSRNPDVRIIDP-PESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELV----TRDMAIEELKLRFPLI 145 (330)
Q Consensus 71 l~~~~~~~p~v~viDp-~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~----~~~~~l~~~~l~fP~V 145 (330)
++..++. -|++++.| ++++..++||+.+.++|++ .|||+|++..+.+.+.. ..+..+ ...++||+|
T Consensus 105 ~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~~~~~~~~~-~~~~g~Pvv 175 (364)
T 2i87_A 105 IQGLFEV-LDVPYVGNGVLSAASSMDKLVMKQLFEH-------RGLPQLPYISFLRSEYEKYEHNILKLV-NDKLNYPVF 175 (364)
T ss_dssp HHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHH-------HTCCCCCEEEEEHHHHHHHHHHHHHHH-HHHCCSSEE
T ss_pred HHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHH-------CCCCCCCEEEEechhhcccchhHHHHH-HHhcCCCEE
Confidence 3444433 37888865 8999999999999999986 69999999998875421 011122 256899999
Q ss_pred EeeCCCCCCCCCcceEEEeChhhhhc-------CCCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccC
Q 047754 146 AKPLEANGSDKSHQMYLIFDNEGLEV-------LEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLK 218 (330)
Q Consensus 146 vKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~ 218 (330)
+||..++| |.||.++.+.++|.. .+.++++||||+ |+++.|.|+|+.-. +. ++. ++.....
T Consensus 176 vKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~~~---~~-~~~---~e~~~~~ 243 (364)
T 2i87_A 176 VKPANLGS---SVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN--AREIEVAVLGNDYP---EA-TWP---GEVVKDV 243 (364)
T ss_dssp EEESSCSS---CTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC--CEEEEEEEEESSSC---EE-CCC---EEECCSC
T ss_pred EEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc--CeEEEEEEEcCCCc---EE-eee---EEEecCC
Confidence 99998643 689999999988874 257899999995 89999999998510 00 111 1111112
Q ss_pred cccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeeEEEEeeCCCCCCCCC
Q 047754 219 GFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGL-NLFNFDLIRDAGERDGYLVIDINYLPGYAKLP 295 (330)
Q Consensus 219 g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~ 295 (330)
++++|.. |+..+.. ....++.+++ .++++++|.++.++||+ .+++||++++. +|+ +||+|||..||++...
T Consensus 244 ~~~~~~~--k~~~g~~--~~~~pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~-~g~-~~viEiN~rpg~t~~s 317 (364)
T 2i87_A 244 AFYDYKS--KYKDGKV--QLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQ-IYINETNAMPGFTAFS 317 (364)
T ss_dssp CC-------------C--CEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCC-EEEEEEESSCCCSTTS
T ss_pred CcCCHHH--cccCCCe--eEEeCCCCCHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEec-CCC-EEEEEEeCCCCCCchh
Confidence 3455554 5543321 1122333332 45789999999999999 58899999974 454 7999999999998763
No 16
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.89 E-value=1.4e-22 Score=197.49 Aligned_cols=239 Identities=13% Similarity=0.144 Sum_probs=157.2
Q ss_pred HHHHHHHCCCeEEEeCCCCCC------------C------cC---------------CCccEEEEccCChhHH-HHHHHH
Q 047754 29 LITKATEQGIGLIRIDPDKPL------------T------EQ---------------GPFDCIMHKLYGPDWT-QQLQQF 74 (330)
Q Consensus 29 l~~~~~~~Gi~~~~id~~~~l------------~------~q---------------~~~DvilhK~~~~~~~-~~l~~~ 74 (330)
..+++++.|+++++||+++.- . .. ..+|+++.-+.+.... ..++.+
T Consensus 61 v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~GEdg~iq~l 140 (383)
T 3k3p_A 61 VMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGF 140 (383)
T ss_dssp HHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEECGGGGCCTTCEEEEECCSTTTSSSHHHHH
T ss_pred HHHHhhhcCCEEEEEEecCCCCEEecccccccccccccccccccccccccccccccccCCCEEEEcCCCCCcchHHHHHH
Confidence 567777889999999987530 0 00 1579999877654211 245566
Q ss_pred HHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCC-ccCCcEEEecCchhh-hhhHHHHHhcCCCcEEEeeCCC
Q 047754 75 SSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEK-VSVPNQAVVSETELV-TRDMAIEELKLRFPLIAKPLEA 151 (330)
Q Consensus 75 ~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~-i~~P~~~~~~~~~~~-~~~~~l~~~~l~fP~VvKp~~a 151 (330)
++. -|++++ .++.++..++||..+.++|++ .| ||+|++..+.+.+.. ..+... ...++||+|+||..+
T Consensus 141 le~-~gipy~G~~~~a~~~~~DK~~~k~~l~~-------~G~Ipvp~~~~~~~~~~~~~~~~~~-~~~lg~PvvVKP~~g 211 (383)
T 3k3p_A 141 LEV-LKMPYVGTNILSSSVAMDKITTNQVLES-------ATTIPQVAYVALIEGEPLESKLAEV-EEKLIYPVFVKPANM 211 (383)
T ss_dssp HHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHH-------HCCCCBCCEEEEETTSCHHHHHHHH-HHHCCSSEEEEECC-
T ss_pred HHH-cCCCccCCCHHHHHHHhCHHHHHHHHHh-------CCCcCCCCEEEEeCccchhHHHHHH-HHhcCCCEEEEeCCC
Confidence 654 378877 578999999999999999986 68 999999999876432 111122 367899999999986
Q ss_pred CCCCCCcceEEEeChhhhhc-------CCCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccC
Q 047754 152 NGSDKSHQMYLIFDNEGLEV-------LEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFS 224 (330)
Q Consensus 152 ~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~ 224 (330)
+ +|.|+.++.++++|.+ .+.++++||||+ |++|.|.|+|+....+ +.+ .+.....++|+|+
T Consensus 212 g---ss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~--G~E~~v~vl~d~~~~~---~~~----~ei~~~~~~~d~~ 279 (383)
T 3k3p_A 212 G---SSVGISKAENRTDLKQAIALALKYDSRVLIEQGVD--AREIEVGILGNTDVKT---TLP----GEIVKDVAFYDYE 279 (383)
T ss_dssp --------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSCEE---CCC----EEEC---------
T ss_pred C---CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC--CeEEEEEEEeCCCeeE---Eee----EEEecCCCccchh
Confidence 4 3689999999998874 257899999995 9999999999853211 111 1222223566676
Q ss_pred CcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 225 QISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 225 ~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
. ++..+.. ....++.+++ .++++++|.++.++||+. ++++|++++. +|+ +||+|||..||++..
T Consensus 280 ~--ky~~g~~--~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~-~g~-~~vlEINtrPG~t~~ 346 (383)
T 3k3p_A 280 A--KYIDNKI--TMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGK-VYLNELNTMPGFTQW 346 (383)
T ss_dssp ------------CEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCC-EEEEEEESSCCCC--
T ss_pred h--cccCCCe--eEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEEC-CCC-EEEEEeeCCCCCCcc
Confidence 5 5543321 1123333433 467899999999999998 7789999985 454 799999999999876
No 17
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.89 E-value=2.3e-22 Score=195.25 Aligned_cols=215 Identities=11% Similarity=0.159 Sum_probs=144.9
Q ss_pred CccEEEEccCChhHH-HHHHHHHHhCCCceecC-hHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhh-
Q 047754 54 PFDCIMHKLYGPDWT-QQLQQFSSRNPDVRIID-PPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVT- 130 (330)
Q Consensus 54 ~~DvilhK~~~~~~~-~~l~~~~~~~p~v~viD-p~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~- 130 (330)
.+|+++.-+.+.... ..++.+++. -|++++- ++.++..++||..+.++|++ .|||+|++..+.+.+...
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~ 169 (372)
T 3tqt_A 98 SADCVFPMVHGTQGEDGALQGLLEL-LNLPYVGANVQSSAVCMEKDLTKTVLRA-------GGIPVVDWHTLSPRDATEG 169 (372)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHH-------TTCCBCCCEEECTTSCCTT
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHH-------CCcCCCCEEEEechhhhhh
Confidence 479999887664211 246666655 4898874 68899999999999999986 799999999998765411
Q ss_pred hhHHHHHhcCCCc-EEEeeCCCCCCCCCcceEEEeChhhhhc-------CCCCeEEEecccCCCeEEEEEEECCeEEEEE
Q 047754 131 RDMAIEELKLRFP-LIAKPLEANGSDKSHQMYLIFDNEGLEV-------LEAPILLQEFVNHGGIIFKVYVAGSSVKCVK 202 (330)
Q Consensus 131 ~~~~l~~~~l~fP-~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~ 202 (330)
.+... ...++|| +|+||..++ +|.||.++.++++|.. .+.++++||||+ |++|.|.|+|+...
T Consensus 170 ~~~~~-~~~lg~P~vvVKP~~gg---ss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~--- 240 (372)
T 3tqt_A 170 VYQRL-LDRWGTSELFVKAVSLG---SSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR--GREIECAVLGNGAP--- 240 (372)
T ss_dssp HHHHH-HHHC---CEEEEESSCC---SGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--SEEEEEEEEESSSC---
T ss_pred HHHHH-HHhcCCCeEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC--CEEEEEEEEeCCCc---
Confidence 11112 3679999 999999864 3689999999998864 367899999996 89999999998621
Q ss_pred eecCCCcchhhhhccCcccccCCcccCCCCC-ccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCC
Q 047754 203 RKSLPDISEEKMKSLKGFLPFSQISSNSVDA-DEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERD 278 (330)
Q Consensus 203 R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~-~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~ 278 (330)
+. ++. ++.....++|+|+. ++..+. . ....++.+++ .++++++|.++.++||+. ++++|++++. +|+
T Consensus 241 ~~-~~~---~ei~~~~~~~d~~~--ky~~g~~~--~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-dg~ 311 (372)
T 3tqt_A 241 KA-SLP---GEIIPHHDYYSYDA--KYLDPNGA--TTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDFFVTP-NNK 311 (372)
T ss_dssp EE-CCC---EEEECC-----------------C--EEESCCCCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCC
T ss_pred eE-eee---EEEecCCCccchhh--cccCCCce--EEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEeC-CCc
Confidence 01 111 12222235666665 554332 1 1123334433 457899999999999998 7779999985 454
Q ss_pred eeEEEEeeCCCCCCCCC
Q 047754 279 GYLVIDINYLPGYAKLP 295 (330)
Q Consensus 279 ~~~ViEVN~fPg~~g~~ 295 (330)
+|++|||..|||++..
T Consensus 312 -~~vlEINt~PG~t~~S 327 (372)
T 3tqt_A 312 -VLVNEINTIPGFTNIS 327 (372)
T ss_dssp -EEEEEEESSCCCSTTC
T ss_pred -EEEEEEECCCCcCccC
Confidence 7999999999999873
No 18
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.88 E-value=3e-21 Score=186.37 Aligned_cols=210 Identities=14% Similarity=0.233 Sum_probs=149.3
Q ss_pred CccEEEEccCChhHH-HHHHHHHHhCCCceecCh-HHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCch----
Q 047754 54 PFDCIMHKLYGPDWT-QQLQQFSSRNPDVRIIDP-PESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETE---- 127 (330)
Q Consensus 54 ~~DvilhK~~~~~~~-~~l~~~~~~~p~v~viDp-~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~---- 127 (330)
.+|+++.=+.+.... ..++.++.. -|++++.| +.++..++||..+.++|++ .|||+|++..+.+.+
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~ 169 (364)
T 3i12_A 98 TVDVIFPIVHGTLGEDGSLQGMLRV-ANLPFVGSDVLSSAACMDKDVAKRLLRD-------AGLNIAPFITLTRTNRHAF 169 (364)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHH-------TTCCBCCEEEEETTTGGGC
T ss_pred CCCEEEEeCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHH-------CCCCCCCEEEEEccccchh
Confidence 478888776553211 245666655 37888864 7999999999999999986 799999999998865
Q ss_pred hhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC-------CCCeEEEecccCCCeEEEEEEECCeE--
Q 047754 128 LVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL-------EAPILLQEFVNHGGIIFKVYVAGSSV-- 198 (330)
Q Consensus 128 ~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------~~p~vvQefI~h~g~~~Kv~ViG~~v-- 198 (330)
+.. .. ...++||+|+||..++| |.|+.++.++++|... +.++++||||+ |++|.|.|+|+..
T Consensus 170 ~~~---~~-~~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~ 240 (364)
T 3i12_A 170 SFA---EV-ESRLGLPLFVKPANQGS---SVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK--GREIECAVLGNDNPQ 240 (364)
T ss_dssp CHH---HH-HHHHCSSEEEEETTCCT---TTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSCE
T ss_pred hHH---HH-HHhcCCCEEEEECCCCC---CcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC--CeEEEEEEEeCCCce
Confidence 322 12 25689999999998643 6899999999888742 57899999995 7999999998862
Q ss_pred -EEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeC
Q 047754 199 -KCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDA 274 (330)
Q Consensus 199 -~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~ 274 (330)
....+. ....++++|+. ++..+.. .....++.+++ .++++++|.++.++||+. ++++|++++.
T Consensus 241 ~~~~~ei----------~~~~~~~~~~~--ky~~~~~-~~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~ 307 (364)
T 3i12_A 241 ASTCGEI----------VLNSEFYAYDT--KYIDDNG-AQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDVFLTA 307 (364)
T ss_dssp EEEEEEE----------ECCTTCC--TT--TTSGGGG-CEEESSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT
T ss_pred EeeeEEE----------ecCCCccCHHH--cccCCCc-eEEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEec
Confidence 211111 11124555554 4433210 01122333333 457899999999999995 7789999985
Q ss_pred CCCCeeEEEEeeCCCCCCCCC
Q 047754 275 GERDGYLVIDINYLPGYAKLP 295 (330)
Q Consensus 275 ~~g~~~~ViEVN~fPg~~g~~ 295 (330)
+|+ +|++|||..||+++..
T Consensus 308 -~g~-~~vlEiN~~Pg~t~~s 326 (364)
T 3i12_A 308 -DNE-VVINEINTLPGFTNIS 326 (364)
T ss_dssp -TCC-EEEEEEESSCCCSTTC
T ss_pred -CCC-EEEEEeeCCCCCCCCC
Confidence 454 7999999999998763
No 19
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.88 E-value=8e-22 Score=192.18 Aligned_cols=259 Identities=15% Similarity=0.220 Sum_probs=169.9
Q ss_pred CCceEEEEEecc-CCcccCcc---hHHHHHHHHCCCeEEEeCCCCCCC--------------------------------
Q 047754 7 QPYCKIGYVFAP-NKEQTVIQ---PSLITKATEQGIGLIRIDPDKPLT-------------------------------- 50 (330)
Q Consensus 7 ~~~~~vg~~~~~-~k~~~~~~---~~l~~~~~~~Gi~~~~id~~~~l~-------------------------------- 50 (330)
++..+|+..+=- |-.+.... ....+++++.|+++++||++.+-.
T Consensus 20 m~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (386)
T 3e5n_A 20 MRKIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVALLP 99 (386)
T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCEEECT
T ss_pred cCCceEEEEeccCCCCchhHHHHHHHHHHHhCccCCEEEEEEECCCCCEEecccchhhccccccccccccccccceeecc
Confidence 345677776632 22222211 235666778899999999774310
Q ss_pred --------------cCCCccEEEEccCChhHH-HHHHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCC
Q 047754 51 --------------EQGPFDCIMHKLYGPDWT-QQLQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEK 114 (330)
Q Consensus 51 --------------~q~~~DvilhK~~~~~~~-~~l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~ 114 (330)
....+|+++.=+.+.... ..++..++. -|++++ .++.++..++||..+.++|++ .|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~-------~G 171 (386)
T 3e5n_A 100 GAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRM-ANLPFVGSGVLGSAVAMDKDMAKRVLRD-------AR 171 (386)
T ss_dssp TCSSSCEEECC--CCCCCCSEEEEEECSHHHHSSHHHHHHHH-TTCCBSSCCHHHHHHHHBHHHHHHHHHH-------TT
T ss_pred CccccceeccccccccCCCCEEEEcCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-------CC
Confidence 112478888777654321 145666654 378877 578999999999999999986 79
Q ss_pred ccCCcEEEecCch----hhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhc-------CCCCeEEEeccc
Q 047754 115 VSVPNQAVVSETE----LVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEV-------LEAPILLQEFVN 183 (330)
Q Consensus 115 i~~P~~~~~~~~~----~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQefI~ 183 (330)
||+|++.++.+.+ ... .. ...++||+|+||..++| |.|+.++.++++|.. .+.++++||||+
T Consensus 172 Ip~p~~~~~~~~~~~~~~~~---~~-~~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~ 244 (386)
T 3e5n_A 172 LAVAPFVCFDRHTAAHADVD---TL-IAQLGLPLFVKPANQGS---SVGVSQVRTADAFAAALALALAYDHKVLVEAAVA 244 (386)
T ss_dssp CCBCCEEEEEHHHHTTCCHH---HH-HHHHCSSEEEEESBSCS---STTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC
T ss_pred CCCCCEEEEeCcccchhhHH---HH-HHhcCCCEEEEECCCCc---CCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 9999999998765 222 12 25689999999998643 689999999998864 256899999995
Q ss_pred CCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHh
Q 047754 184 HGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREAL 261 (330)
Q Consensus 184 h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~L 261 (330)
|+++.|.|+|+....+. ..+++....++|+|+. ++..++.. ....++.++. .++++++|.++.++|
T Consensus 245 --G~E~~v~vl~~~~~~~~-------~~gei~~~~~~~d~~~--ky~~~~~~-~~~~Pa~l~~~~~~~i~~~a~~~~~aL 312 (386)
T 3e5n_A 245 --GREIECAVLGNAVPHAS-------VCGEVVVHDAFYSYAT--KYISEHGA-EIVIPADIDAQTQQRIQQIAVQAYQAL 312 (386)
T ss_dssp --SEEEEEEEECSSSCEEE-------EEEEECC--------------------CEESSCSSCHHHHHHHHHHHHHHHHHH
T ss_pred --CeEEEEEEEeCCCceEE-------EeEEEEeCCcccchhc--ccCCCCCe-EEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 89999999998641111 0001111123555554 44322100 1122333333 457899999999999
Q ss_pred CCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 262 GLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 262 Gl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
|+. ++++|++++. +|+ +|++|||..||++..
T Consensus 313 g~~G~~~vDf~~~~-dg~-~~vlEiN~~PG~t~~ 344 (386)
T 3e5n_A 313 GCAGMARVDVFLCA-DGR-IVINEVNTLPGFTRI 344 (386)
T ss_dssp TCCSEEEEEEEECT-TCC-EEEEEEESSCCCSTT
T ss_pred CCccEEEEEEEEEC-CCc-EEEEEeECCCCCCcc
Confidence 998 7789999985 454 799999999999876
No 20
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.88 E-value=1.1e-21 Score=187.54 Aligned_cols=233 Identities=16% Similarity=0.236 Sum_probs=163.5
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCC--------------------------------------cCCCccEEEEccCChhH-
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLT--------------------------------------EQGPFDCIMHKLYGPDW- 67 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~--------------------------------------~q~~~DvilhK~~~~~~- 67 (330)
..+.+++++.|++++.||.+.... ....+|+++..+.+...
T Consensus 25 ~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~ge 104 (343)
T 1e4e_A 25 IEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCYSAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGE 104 (343)
T ss_dssp HHHHHHSCTTTEEEEEEEECTTSCEEEESCCCTTCCCTTCEEEEECSCTTTCEEEEEETTEEEEEECSEEEECCCSTTTT
T ss_pred HHHHHHhhhcCCEEEEEEEcCCCCEEecccchhhcccccccceecccccccccceeecccccccccCCEEEEeCCCCCCc
Confidence 346777788899999988653110 01235777766543211
Q ss_pred HHHHHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEE
Q 047754 68 TQQLQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIA 146 (330)
Q Consensus 68 ~~~l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~Vv 146 (330)
-..++..++. -|++++ .++.++..++||..+.++|++ .|||+|++..+.+.+... ...++||+|+
T Consensus 105 d~~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~------~~~~~~Pvvv 170 (343)
T 1e4e_A 105 DGSIQGLFEL-SGIPFVGCDIQSSAICMDKSLTYIVAKN-------AGIATPAFWVINKDDRPV------AATFTYPVFV 170 (343)
T ss_dssp SSHHHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHH-------TTCBCCCEEEECTTCCCC------GGGSCSCEEE
T ss_pred CHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-------CCCCcCCEEEEechhhhh------hhccCCCEEE
Confidence 0134444433 378887 579999999999999999986 799999999998765532 1568999999
Q ss_pred eeCCCCCCCCCcceEEEeChhhhhc-------CCCCeEEEecccCCCeEEEEEEECCe----EEEEEeecCCCcchhhhh
Q 047754 147 KPLEANGSDKSHQMYLIFDNEGLEV-------LEAPILLQEFVNHGGIIFKVYVAGSS----VKCVKRKSLPDISEEKMK 215 (330)
Q Consensus 147 Kp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQefI~h~g~~~Kv~ViG~~----v~~~~R~S~~~~~~~~~~ 215 (330)
||..++ +|.|+.++.+.++|.. .+.++++||||+ |+++.|.|+|+. +....+. .
T Consensus 171 KP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~~~~~~~~~~ei----------~ 235 (343)
T 1e4e_A 171 KPARSG---SSFGVKKVNSADELDYAIESARQYDSKILIEQAVS--GCEVGCAVLGNSAALVVGEVDQI----------R 235 (343)
T ss_dssp EESSCC---TTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC--SEEEEEEEEEETTCCEECCCEEE----------E
T ss_pred EeCCCC---CCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC--CeEEEEEEEeCCCCeEEeeeEEE----------e
Confidence 999964 3679999999988864 257999999995 899999999875 2111111 1
Q ss_pred ccCcccccCCcccCC----CCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCC
Q 047754 216 SLKGFLPFSQISSNS----VDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYL 288 (330)
Q Consensus 216 ~~~g~~~f~~~s~~~----~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~f 288 (330)
...++++|.. ++. .+.. ....++.+++ .++++++|.++.++||+. ++++|++++. +|+ +||+|||..
T Consensus 236 ~~~~~~~~~~--k~~~~~~~g~~--~~~~p~~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~~-~g~-~~viEiN~r 309 (343)
T 1e4e_A 236 LQYGIFRIHQ--EVEPEKGSENA--VITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQD-NGR-IVLNEVNTL 309 (343)
T ss_dssp ESSSCCCGGG--SSSGGGCCSSE--EECSSCSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEECT-TCC-EEEEEEESS
T ss_pred eCCCccCHhh--cccccCCCCCe--eEEeCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEeC-CCC-EEEEEeeCC
Confidence 1123455554 554 2321 1122333332 468899999999999995 8899999974 454 799999999
Q ss_pred CCCCCC
Q 047754 289 PGYAKL 294 (330)
Q Consensus 289 Pg~~g~ 294 (330)
||++..
T Consensus 310 pg~t~~ 315 (343)
T 1e4e_A 310 PGFTSY 315 (343)
T ss_dssp CCCSTT
T ss_pred CCCCcc
Confidence 999875
No 21
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.87 E-value=5.5e-21 Score=181.42 Aligned_cols=206 Identities=16% Similarity=0.173 Sum_probs=149.2
Q ss_pred CCccEEEEccCChhHH-HHHHHHHHhCCCceecC-hHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhh
Q 047754 53 GPFDCIMHKLYGPDWT-QQLQQFSSRNPDVRIID-PPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVT 130 (330)
Q Consensus 53 ~~~DvilhK~~~~~~~-~~l~~~~~~~p~v~viD-p~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~ 130 (330)
..+|+++..+.+.... ..++..++. -|++++. ++.++..++||+.+.++|++ .|||+|++..+.+.+..
T Consensus 75 ~~~D~v~~~~hg~~gedg~i~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~- 145 (322)
T 2fb9_A 75 ERYDVVFPLLHGRFGEDGTVQGFLEL-LGKPYVGAGVAASALCMDKDLSKRVLAQ-------AGVPVVPWVAVRKGEPP- 145 (322)
T ss_dssp TTCSEEEEECCSTTTTSSHHHHHHHH-HTCCBSSCCHHHHHHHHCHHHHHHHHHH-------TTCCCCCEEEEETTSCC-
T ss_pred cCCCEEEEeCCCCCCccHHHHHHHHH-cCCCeeCcCHHHHHHHcCHHHHHHHHHH-------CCCCCCCEEEEECchhh-
Confidence 4689999888643210 134444433 3788885 59999999999999999986 79999999999876531
Q ss_pred hhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhc-------CCCCeEEEecccCCC-eEEEEEEECCe---EE
Q 047754 131 RDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEV-------LEAPILLQEFVNHGG-IIFKVYVAGSS---VK 199 (330)
Q Consensus 131 ~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQefI~h~g-~~~Kv~ViG~~---v~ 199 (330)
. ..++||+|+||..++| |.|+.++.++++|.. .+.++++||||+ | +++.|.|+|++ +.
T Consensus 146 ~------~~~g~PvvvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~~~ 214 (322)
T 2fb9_A 146 V------VPFDPPFFVKPANTGS---SVGISRVERFQDLEAALALAFRYDEKAVVEKALS--PVRELEVGVLGNVFGEAS 214 (322)
T ss_dssp C------CCSCSCEEEEETTCCT---TTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS--SCEEEEEEEESSSSCEEE
T ss_pred h------hccCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC--CCeeEEEEEEeCCCceEe
Confidence 1 2689999999998643 689999999988875 257899999995 7 99999999985 33
Q ss_pred EEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCC-cEEEEEEEEeCCC
Q 047754 200 CVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGL-NLFNFDLIRDAGE 276 (330)
Q Consensus 200 ~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl-~l~GvDvi~~~~~ 276 (330)
...+... ..++++|.. ++..+.. ....++.+++ .++++++|.++.++||+ .++++|++++ +
T Consensus 215 ~~~ei~~----------~~~~~~~~~--k~~~g~~--~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~vD~~~~--~ 278 (322)
T 2fb9_A 215 PVGEVRY----------EAPFYDYET--KYTPGRA--ELLIPAPLDPGTQETVQELALKAYKVLGVRGMARVDFFLA--E 278 (322)
T ss_dssp EEEEEEE----------ECCEEETTT--EEECCEE--EEESSCCCCTTHHHHHHHHHHHHHHHHTCCSEEEEEEEEE--T
T ss_pred eeEEEee----------CCCccCHHH--cccCCCe--EEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEE--C
Confidence 2222110 113444543 4433311 1112333333 56899999999999999 7899999998 4
Q ss_pred CCeeEEEEeeCCCCCCCCC
Q 047754 277 RDGYLVIDINYLPGYAKLP 295 (330)
Q Consensus 277 g~~~~ViEVN~fPg~~g~~ 295 (330)
| .+||+|||..||++...
T Consensus 279 g-~~~vlEiN~rpg~t~~s 296 (322)
T 2fb9_A 279 G-ELYLNELNTIPGFTPTS 296 (322)
T ss_dssp T-EEEEEEEESSCCCSSSC
T ss_pred C-cEEEEEEECCCCCCccc
Confidence 5 48999999999998764
No 22
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.87 E-value=4.2e-21 Score=185.93 Aligned_cols=207 Identities=16% Similarity=0.148 Sum_probs=149.5
Q ss_pred CccEEEEccCChhHH-HHHHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhh
Q 047754 54 PFDCIMHKLYGPDWT-QQLQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTR 131 (330)
Q Consensus 54 ~~DvilhK~~~~~~~-~~l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~ 131 (330)
.+|+++.-+.+.... ..++..++. -|++++ .++.++..++||..+.++|++ .|||+|++..+.+.+....
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~ 178 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEF-YRIAFIGPRIEASVLSYNKYLTKLYAKD-------LGIKTLDYVLLNEKNRANA 178 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHH-TTCCEESCCHHHHHHHHSHHHHHHHHHH-------HTCBCCCCEEECTTTGGGH
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHH-------CCcCCCCEEEEeCCchHHH
Confidence 467888776653211 235555544 488887 779999999999999999986 6999999999987652211
Q ss_pred hHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhc-------CCCCeEEEecccCCC-eE---EEEEEECCeEEE
Q 047754 132 DMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEV-------LEAPILLQEFVNHGG-II---FKVYVAGSSVKC 200 (330)
Q Consensus 132 ~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQefI~h~g-~~---~Kv~ViG~~v~~ 200 (330)
. . ...++||+|+||..++ +|.|+.++.++++|.. .+.++++||||+ | ++ +.|.| ++++.+
T Consensus 179 ~-~--~~~lg~PvvVKP~~g~---ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~--G~~E~svi~v~v-~g~~~~ 249 (367)
T 2pvp_A 179 L-D--LMNFNFPFIVKPSNAG---SSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ--GVKEYNLAGCKI-KKDFCF 249 (367)
T ss_dssp H-H--HCCSCSCEEEEESSCC---TTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT--TCEEEEEEEEEE-TTEEEE
T ss_pred H-H--HhccCCCEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC--CCceeeEEEEEE-CCEEEE
Confidence 1 2 3678999999999864 3689999999988864 357999999995 7 89 77888 887543
Q ss_pred E-EeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCC
Q 047754 201 V-KRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGE 276 (330)
Q Consensus 201 ~-~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~ 276 (330)
. .+.. + ..++|+|+. ++..++. ....++.+++ .++++++|.++.++||+. ++++|++++ +
T Consensus 250 ~~~ei~-~---------~~~~~d~~~--ky~~g~~--~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~--~ 313 (367)
T 2pvp_A 250 SYIEEP-N---------KQEFLDFKQ--KYLDFSR--NKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVI--E 313 (367)
T ss_dssp EEEEET-T---------TTEEECCCC--SSCCSCC--CSCCCCCCCHHHHHHHHHHHHHHHTTTSTTCCEEEEEEEE--T
T ss_pred EEEEEe-c---------CCceEcccc--cccCCCe--eEEecCCCCHHHHHHHHHHHHHHHHHcCCCCEEEEEEEEE--C
Confidence 2 2322 1 124566654 5544321 1123333433 467899999999999986 888999998 3
Q ss_pred CCeeEEEEeeCCCCCCCC
Q 047754 277 RDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 277 g~~~~ViEVN~fPg~~g~ 294 (330)
| .+||+|||..||+++.
T Consensus 314 g-~~~vlEiN~rpg~t~~ 330 (367)
T 2pvp_A 314 N-EVYLNEINPIPGSLAN 330 (367)
T ss_dssp T-EEEEEEEESSCGGGGG
T ss_pred C-eEEEEEEeCCCCCCcc
Confidence 4 4899999999998765
No 23
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.87 E-value=4.2e-21 Score=200.87 Aligned_cols=244 Identities=15% Similarity=0.163 Sum_probs=169.2
Q ss_pred cchHHHHHHHHCCCeEEEeCCCCCCCcCCCccEEEEccCChhHHHHHHHHHHhCCCc-eecChHHHHHHhcCHHHHHHHH
Q 047754 25 IQPSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRNPDV-RIIDPPESIERLHNRDSMLEVV 103 (330)
Q Consensus 25 ~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~~DvilhK~~~~~~~~~l~~~~~~~p~v-~viDp~~ai~~~~dR~~~~~~L 103 (330)
.+..++++|+++|++++.|+++.++...|--|.+ +.+. ++. ..-++..++..+.||..+.++|
T Consensus 434 st~~Iv~~A~~~gid~~vlg~e~~l~~lg~~~~~-~~ig---------------~~~~t~~~s~~aa~~~~DK~~tk~lL 497 (757)
T 3ln7_A 434 STQALLFDVIQKGIHTEILDENDQFLCLKYGDHI-EYVK---------------NGNMTSHDSYISPLIMENKVVTKKVL 497 (757)
T ss_dssp HHHHHHHHHHHHTCEEEEEETTTTEEEEEETTEE-EEEE---------------TTTBCSSSBSHHHHHHHHSHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEEEECCCHHHHHhcccccc-eeec---------------cCccCCCCHHHHHHHhcCHHHHHHHH
Confidence 4567899999999999999998665432211111 1110 233 3457778899999999999999
Q ss_pred HhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEE----eChhhhhc-------C
Q 047754 104 SRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLI----FDNEGLEV-------L 172 (330)
Q Consensus 104 ~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv----~~~~~L~~-------l 172 (330)
.+ +|||+|++.++.+.++... .....++||+|+||..++ +|.||.++ .+.+++.. .
T Consensus 498 ~~-------~GIPvP~~~~~~~~~ea~~---~~~~~~g~PvVVKP~~g~---~G~GV~iv~~~v~~~eel~~al~~a~~~ 564 (757)
T 3ln7_A 498 QK-------AGFNVPQSVEFTSLEKAVA---SYALFENRAVVIKPKSTN---YGLGITIFQQGVQNREDFAKALEIAFRE 564 (757)
T ss_dssp HH-------HTCCCCCEEEESCHHHHHH---GGGGSSSSCEEEEESSCS---TTTTCEECSSCCCCHHHHHHHHHHHHHH
T ss_pred HH-------CCcCCCCEEEECCHHHHHH---HHHHhcCCCEEEEeCCCC---CCCCeEEecCCCCCHHHHHHHHHHHHhc
Confidence 87 7999999999988665422 112568999999999854 46899998 78888764 2
Q ss_pred CCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhh---------------h----------------------
Q 047754 173 EAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKM---------------K---------------------- 215 (330)
Q Consensus 173 ~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~---------------~---------------------- 215 (330)
+..+++|||| .|++++|+|+||+++.++++..+++..++. +
T Consensus 565 ~~~vlVEefI--~G~Ei~v~Vlggkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~ 642 (757)
T 3ln7_A 565 DKEVMVEDYL--VGTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLK 642 (757)
T ss_dssp CSSEEEEECC--CSEEEEEEEETTEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHH
T ss_pred CCcEEEEEcC--CCcEEEEEEECCEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHHH
Confidence 5789999999 489999999999999877664443221110 0
Q ss_pred ---------ccCcc---cccCCcccCCCCCccccccccCCCCchHHHHHHHHHHHHHhCCcEEEEEEEEeCC------CC
Q 047754 216 ---------SLKGF---LPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRALREALGLNLFNFDLIRDAG------ER 277 (330)
Q Consensus 216 ---------~~~g~---~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LGl~l~GvDvi~~~~------~g 277 (330)
...|. +.|. +|++.|+. .....-...+..+++|.++++++|+.+.|||+++++- .+
T Consensus 643 ~~g~~~d~Vp~~Ge~v~L~~~--~Nls~GG~----~~dvtd~i~p~~~~~a~~aa~~lGl~~~GvDli~~di~~p~~~~~ 716 (757)
T 3ln7_A 643 EQGLTIDSIPAKDQLVQLRAN--SNISTGGD----SIDMTDEMHESYKQLAVGITKAMGAAVCGVDLIIPDLKQPATPNL 716 (757)
T ss_dssp HHTCCSSSCCCSSCEEECCSS--CCGGGTCC----EEECTTTSCHHHHHHHHHHHHHHTCSEEEEEEEESCSSSCCCSST
T ss_pred HcCCCccccCCCCCEEEeecc--cccccCcc----ceeccccCCHHHHHHHHHHHHHhCCCEEEEEEEecCccccccccC
Confidence 00111 1222 26665533 2222112356789999999999999999999999841 12
Q ss_pred CeeEEEEeeCCCCCCCC--------CCcHHHHHHHH
Q 047754 278 DGYLVIDINYLPGYAKL--------PGYETLLMDFF 305 (330)
Q Consensus 278 ~~~~ViEVN~fPg~~g~--------~~~~~~l~~~i 305 (330)
..+.|||||..||+.+. .++...+++++
T Consensus 717 ~~~~iiEvN~~P~~~~h~~p~~g~~~~v~~~ii~~l 752 (757)
T 3ln7_A 717 TSWGVIEANFNPMMMMHIFPYAGKSRRLTQNVIKML 752 (757)
T ss_dssp TTCEEEEEESSCCHHHHHSCSSSCCCCCHHHHHHHH
T ss_pred CCeEEEEEcCCcchhhhhccccCCCCchHHHHHHHh
Confidence 24789999999996665 22556665554
No 24
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.85 E-value=6.5e-21 Score=184.92 Aligned_cols=215 Identities=14% Similarity=0.180 Sum_probs=149.9
Q ss_pred CccEEEEccCChhH-HHHHHHHHHhCCCceecCh-HHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhh
Q 047754 54 PFDCIMHKLYGPDW-TQQLQQFSSRNPDVRIIDP-PESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTR 131 (330)
Q Consensus 54 ~~DvilhK~~~~~~-~~~l~~~~~~~p~v~viDp-~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~ 131 (330)
.+|+++.=+.+... -..++.+++. -|++++.| +.++..++||..|.++|++ .|||+|++..+.+.+....
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~-~gip~vG~~~~a~~~~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~ 180 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLEL-AGVPYVGAGVLASAVGMDKEFTKKLLAA-------DGLPVGAYAVLRPPRSTLH 180 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHH-HTCCBSSSCHHHHHHHHBHHHHHHHHHH-------TTCCBCCEEEECTTCCCCC
T ss_pred CccEEEECCCCCCCccHHHHHHHHH-cCCCccCCcHHHHHHHcCHHHHHHHHHH-------cCcCCCCEEEEECcccchh
Confidence 47888877654321 0234455543 37988886 8999999999999999986 7999999999988664211
Q ss_pred hHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhc-------CCCCeEEEecccCCCeEEEEEEECCeEEEEEee
Q 047754 132 DMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEV-------LEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRK 204 (330)
Q Consensus 132 ~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~-------l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~ 204 (330)
... ...++||+|+||..++| |.|+.++.++++|.. .+.++++||||+ |++|.|.|+|+.-..+ +.
T Consensus 181 ~~~--~~~lg~PvvVKP~~ggs---s~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~-~~ 252 (373)
T 3lwb_A 181 RQE--CERLGLPVFVKPARGGS---SIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS--GRELECGVLEMPDGTL-EA 252 (373)
T ss_dssp HHH--HHHHCSCEEEEESBCST---TTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE--EEEEEEEEEECTTSCE-EE
T ss_pred HHH--HHhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC--CeEEEEEEEECCCCce-EE
Confidence 112 36789999999998643 689999999998864 267899999996 8999999998852100 00
Q ss_pred cCCCcchhhhhcc--Cc----ccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCC
Q 047754 205 SLPDISEEKMKSL--KG----FLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAG 275 (330)
Q Consensus 205 S~~~~~~~~~~~~--~g----~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~ 275 (330)
.+. ++.... .+ +|+|+. ++..+.. ....++.+++ .++++++|.++.++||+. ++++|++++.
T Consensus 253 -~~~---~ei~~~~~~~~~~~~~d~~~--ky~~~~~--~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~~vDf~~~~- 323 (373)
T 3lwb_A 253 -STL---GEIRVAGVRGREDSFYDFAT--KYLDDAA--ELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLTD- 323 (373)
T ss_dssp -CCC---EEEECCSTTCSEESSSCHHH--HHTCTTC--EEESSCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEET-
T ss_pred -eee---eEEEccCCCCccccccchhh--cccCCCc--eEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEEEEEEEC-
Confidence 110 011111 12 555554 4433221 1112333333 468899999999999995 8889999985
Q ss_pred CCCeeEEEEeeCCCCCCCCC
Q 047754 276 ERDGYLVIDINYLPGYAKLP 295 (330)
Q Consensus 276 ~g~~~~ViEVN~fPg~~g~~ 295 (330)
+| . ||+|||..||++...
T Consensus 324 dg-~-~vlEIN~~PG~t~~S 341 (373)
T 3lwb_A 324 DG-P-VINEINTMPGFTTIS 341 (373)
T ss_dssp TE-E-EEEEEESSCCCSTTS
T ss_pred CC-C-EEEEecCCCCCCccc
Confidence 45 5 899999999998753
No 25
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.84 E-value=4.7e-20 Score=171.79 Aligned_cols=234 Identities=14% Similarity=0.150 Sum_probs=159.2
Q ss_pred chHHHHHHHHCCCeEEEeCCCCCC-C-----------------------------cCCCccEEEEccCChh-----HHHH
Q 047754 26 QPSLITKATEQGIGLIRIDPDKPL-T-----------------------------EQGPFDCIMHKLYGPD-----WTQQ 70 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~l-~-----------------------------~q~~~DvilhK~~~~~-----~~~~ 70 (330)
...++++++++|++++.+|++... . ....+|+++.+..... ....
T Consensus 21 ~~~l~~a~~~~G~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~ 100 (316)
T 1gsa_A 21 SFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATY 100 (316)
T ss_dssp HHHHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEECSCSSCCEEEEEEEEEEGGGSSEEEECCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEchhHeEEECCeEEEEEeeeEeccCcccceeccCccccccccCCEEEEecCCCCchhhHHHHH
Confidence 466899999999999999976311 0 0013788888775421 1223
Q ss_pred HHHHHHhCCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCC
Q 047754 71 LQQFSSRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLE 150 (330)
Q Consensus 71 l~~~~~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~ 150 (330)
+.+.++. .|++++|+++++..+.||+.+.++|. ++|+|..+.+.++... .+ ..++ |+|+||..
T Consensus 101 ~~~~l~~-~g~~~~~~~~~~~~~~dK~~~~~~l~-----------~~P~t~~~~~~~~~~~--~~--~~~~-p~vvKP~~ 163 (316)
T 1gsa_A 101 ILERAEE-KGTLIVNKPQSLRDCNEKLFTAWFSD-----------LTPETLVTRNKAQLKA--FW--EKHS-DIILKPLD 163 (316)
T ss_dssp HHHHHHH-TTCEEESCHHHHHHCCTTGGGGGGTT-----------TSCCEEEESCHHHHHH--HH--HHHS-SEEEECSS
T ss_pred HHHHHHH-cCCeEecCHHHHHhhhhHHHHHhhhh-----------cCCCeEEeCCHHHHHH--HH--HHcC-CEEEEECC
Confidence 3444434 37899999999999999999887652 8999999987665432 23 2356 99999998
Q ss_pred CCCCCCCcceEEEe-Chhhhhc-------C-CCCeEEEecccCC-CeEEEEEEECCeEEE-EE-eecCCCcchhhhhccC
Q 047754 151 ANGSDKSHQMYLIF-DNEGLEV-------L-EAPILLQEFVNHG-GIIFKVYVAGSSVKC-VK-RKSLPDISEEKMKSLK 218 (330)
Q Consensus 151 a~Gs~~sh~m~iv~-~~~~L~~-------l-~~p~vvQefI~h~-g~~~Kv~ViG~~v~~-~~-R~S~~~~~~~~~~~~~ 218 (330)
++ +|+|+.++. +.++|.. . ..++++||||+.. +.+++++++|+++.. .. |.+.. ++|.+
T Consensus 164 g~---~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~~~~~~~~r~~~~----~~~~~-- 234 (316)
T 1gsa_A 164 GM---GGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQG----GETRG-- 234 (316)
T ss_dssp CC---TTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECSEEEEEECCS----SCSCC--
T ss_pred CC---CcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCEEeeeEEEEeCCC----CCcee--
Confidence 53 568999998 7766643 2 3689999999853 799999999999875 33 43321 11111
Q ss_pred cccccCCcccCCCCCccccccccCCCCchHHHHHHHHHHHHH---hCCcEEEEEEEEeCCCCCeeEEEEeeC-C-CCCCC
Q 047754 219 GFLPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRALREA---LGLNLFNFDLIRDAGERDGYLVIDINY-L-PGYAK 293 (330)
Q Consensus 219 g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~---LGl~l~GvDvi~~~~~g~~~~ViEVN~-f-Pg~~g 293 (330)
|++.++ ...+..+ .++++++|.++.++ +|+.++|+|++ | . ||+|||. + |||..
T Consensus 235 ---------~~~~gg----~~~~~~~--~~~~~~~a~~~~~~l~~~g~~~~~vD~~-----g-~-~~iEvN~r~~~~~~~ 292 (316)
T 1gsa_A 235 ---------NLAAGG----RGEPRPL--TESDWKIARQIGPTLKEKGLIFVGLDII-----G-D-RLTEINVTSPTCIRE 292 (316)
T ss_dssp ---------CGGGTC----EEEEEEC--CHHHHHHHHHHHHHHHHTTCCEEEEEEE-----T-T-EEEEEECSSCCCHHH
T ss_pred ---------EEccCC----ccccCCC--CHHHHHHHHHHHHHHHhCCCcEEEEEec-----C-C-EEEEEcCCCCcchHH
Confidence 333332 1122222 34578899999877 59999999998 3 3 6999999 5 58765
Q ss_pred C-----CCcHHHHHHHHHH
Q 047754 294 L-----PGYETLLMDFFLN 307 (330)
Q Consensus 294 ~-----~~~~~~l~~~i~~ 307 (330)
+ .++.+.+.+++..
T Consensus 293 ~~~~~g~~~~~~~~~~~~~ 311 (316)
T 1gsa_A 293 IEAEFPVSITGMLMDAIEA 311 (316)
T ss_dssp HHHHSSCCHHHHHHHHHHH
T ss_pred HHHhhCcCHHHHHHHHHHH
Confidence 4 2344555555443
No 26
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=99.80 E-value=2e-17 Score=159.54 Aligned_cols=226 Identities=18% Similarity=0.242 Sum_probs=153.7
Q ss_pred chHHHHHHHHCCCeEEEeCCCCCC--CcC-------------------CCccEEEEccCChhHHHHHHHHHHhCCCceec
Q 047754 26 QPSLITKATEQGIGLIRIDPDKPL--TEQ-------------------GPFDCIMHKLYGPDWTQQLQQFSSRNPDVRII 84 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~l--~~q-------------------~~~DvilhK~~~~~~~~~l~~~~~~~p~v~vi 84 (330)
...+.++++++|++++.+|++... ... ..+|+++.-..+.. ..+.+.+++ -|+++.
T Consensus 13 g~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~~--~~~~~~l~~-~gi~~~ 89 (380)
T 3ax6_A 13 GKMMTLEAKKMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEHID--VQTLKKLYN-EGYKIH 89 (380)
T ss_dssp HHHHHHHHHHTTCEEEEEESSTTCTTGGGSSEEEECCTTCHHHHHHHHHTCSEEEESCSCSC--HHHHHHHHH-TTCEES
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchhhhCceEEECCCCCHHHHHHHHhcCCEEEecccCCC--HHHHHHHHH-CCCeEC
Confidence 356888899999999999986321 100 13566664322211 223334433 378888
Q ss_pred ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEe
Q 047754 85 DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIF 164 (330)
Q Consensus 85 Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~ 164 (330)
++++++..+.||+.+.++|++ .|||+|++..+.+.++ .+ ..++||+|+||..++ -+|.|+.++.
T Consensus 90 ~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~~~-----~~--~~~~~P~vvKp~~~~--y~g~Gv~~v~ 153 (380)
T 3ax6_A 90 PSPYTLEIIQDKFVQKEFLKK-------NGIPVPEYKLVKDLES-----DV--REFGFPVVQKARKGG--YDGRGVFIIK 153 (380)
T ss_dssp SCHHHHHHHHSHHHHHHHHHH-------TTCCCCCEEECSSHHH-----HH--HTTCSSEEEEESCCC-------EEEEC
T ss_pred CCHHHHHHhcCHHHHHHHHHH-------cCCCCCCeEEeCCHHH-----HH--HhcCCCEEEEecCCC--CCCCCeEEEC
Confidence 999999999999999999986 7999999999887654 12 568999999999853 1358999999
Q ss_pred ChhhhhcC-CCCeEEEecccCCCeEEEEEEECC---eEEEEE-eecCCCcchhhhhccCcccccCCcccCCCCCcccccc
Q 047754 165 DNEGLEVL-EAPILLQEFVNHGGIIFKVYVAGS---SVKCVK-RKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDL 239 (330)
Q Consensus 165 ~~~~L~~l-~~p~vvQefI~h~g~~~Kv~ViG~---~v~~~~-R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~ 239 (330)
+.+++... +.++++||||+. |+++.|.++++ ++.+.. .... +. ...+.+.. ..
T Consensus 154 ~~~el~~~~~~~~lvEe~i~~-g~e~sv~~~~~~~G~~~~~~~~~~~--~~-----~~~~~~~~--------------~~ 211 (380)
T 3ax6_A 154 NEKDLENAIKGETYLEEFVEI-EKELAVMVARNEKGEIACYPVVEMY--FD-----EDANICDT--------------VI 211 (380)
T ss_dssp SGGGGGGCCCSSEEEEECCCE-EEEEEEEEEECSSCCEEEEEEEEEC---------------CE--------------EE
T ss_pred CHHHHHHHhcCCEEEEeccCC-CeeEEEEEEECCCCCEEEECCeeee--ec-----ccCCeeEE--------------EE
Confidence 99999864 579999999963 89999999975 444321 1111 00 00011110 01
Q ss_pred ccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 240 EKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 240 ~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
.+..+++ .++++++|.++.++||+. ++++|++++. +|+ ++|+|||.-||..+.
T Consensus 212 ~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~g~-~~viEiN~R~~~~~~ 267 (380)
T 3ax6_A 212 APARIEEKYSKIAREIATSVVEALEGVGIFGIEMFLTK-QGE-ILVNEIAPRPHNSGH 267 (380)
T ss_dssp ESCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TSC-EEEEEEESSCCGGGT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CCc-EEEEEecCCCCCCce
Confidence 1222222 457899999999999995 8889999985 454 799999999997553
No 27
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.78 E-value=1.5e-17 Score=162.64 Aligned_cols=246 Identities=11% Similarity=0.112 Sum_probs=160.9
Q ss_pred CCCceEEEEEeccCCcccCcchHHHHHHHHCCCeEEEeCCCCCC-CcC-C-CccEEEEccCChhH---------------
Q 047754 6 GQPYCKIGYVFAPNKEQTVIQPSLITKATEQGIGLIRIDPDKPL-TEQ-G-PFDCIMHKLYGPDW--------------- 67 (330)
Q Consensus 6 ~~~~~~vg~~~~~~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l-~~q-~-~~DvilhK~~~~~~--------------- 67 (330)
|++..+||..-.- .+...++++|+++|++++.+| ...- ..+ . .+..+.....+...
T Consensus 21 mm~~~~I~ilGgG-----~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~e~ 94 (403)
T 3k5i_A 21 MWNSRKVGVLGGG-----QLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTAEI 94 (403)
T ss_dssp CCSCCEEEEECCS-----HHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEESS
T ss_pred CCCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEECC
Confidence 3444556555433 134668899999999999999 5311 111 0 11222222222110
Q ss_pred ---HHHHHHHHHhCCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEec--CchhhhhhHHHHHhcCCC
Q 047754 68 ---TQQLQQFSSRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVS--ETELVTRDMAIEELKLRF 142 (330)
Q Consensus 68 ---~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~--~~~~~~~~~~l~~~~l~f 142 (330)
...+.+.+++ |+++..+++++..++||..+.++|++ .|||+|++..+. +.++... .. ..++|
T Consensus 95 e~~~~~~l~~l~~--g~~v~p~~~a~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~~~--~~--~~~g~ 161 (403)
T 3k5i_A 95 EHVDTYALEEVAS--EVKIEPSWQAIRTIQNKFNQKEHLRK-------YGIPMAEHRELVENTPAELAK--VG--EQLGY 161 (403)
T ss_dssp SCSCHHHHHHHTT--TSEESSCHHHHHHHTSHHHHHHHHHT-------TTCCBCCEEEESSCCHHHHHH--HH--HHHCS
T ss_pred CCCCHHHHHHHHc--CCccCcCHHHHHHhcCHHHHHHHHHH-------CCcCCCCEEEEcCCCHHHHHH--HH--HHhCC
Confidence 0112233433 78899999999999999999999986 799999999998 6554432 22 56899
Q ss_pred cEEEeeCCCCCCCCCcceEEEeChhhhhcC-----CCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhcc
Q 047754 143 PLIAKPLEANGSDKSHQMYLIFDNEGLEVL-----EAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSL 217 (330)
Q Consensus 143 P~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~ 217 (330)
|+|+||..++ + +|+|+.++.++++|... +.++++||||+ +|+++.|.++++.--+.. .|-. +....
T Consensus 162 P~VvKp~~gg-~-~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~-~~~E~sv~v~~~~~g~~~---~p~~---~~~~~ 232 (403)
T 3k5i_A 162 PLMLKSKTMA-Y-DGRGNFRVNSQDDIPEALEALKDRPLYAEKWAY-FKMELAVIVVKTKDEVLS---YPTV---ETVQE 232 (403)
T ss_dssp SEEEEESSSC-C-TTTTEEEECSTTSHHHHHHHTTTSCEEEEECCC-EEEEEEEEEEECSSCEEE---CCCE---EEEEE
T ss_pred CEEEEeCCCC-c-CCCCEEEECCHHHHHHHHHhcCCCcEEEecCCC-CCeEEEEEEEEcCCCEEE---eCCe---eeEEe
Confidence 9999998752 2 46899999999888653 57899999995 379999999976321111 1210 00000
Q ss_pred CcccccCCcccCCCCCccccccccCC-CCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCC
Q 047754 218 KGFLPFSQISSNSVDADEEVDLEKTE-MPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAK 293 (330)
Q Consensus 218 ~g~~~f~~~s~~~~~~~~~~~~~~~~-~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g 293 (330)
.+.+.. ...+.. +++ .++++++|.++.++||+. ++++|++++. +|+ +||+|||.-||..|
T Consensus 233 ~g~~~~--------------~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~-dg~-~~v~EiNpR~~~sg 296 (403)
T 3k5i_A 233 DSICKL--------------VYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLE-DDS-IMLCEIASRIHNSG 296 (403)
T ss_dssp TTEEEE--------------EEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEET-TSC-EEEEEEESSCCGGG
T ss_pred CCEEEE--------------EEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CCc-EEEEEeecCCCCCC
Confidence 111110 011222 222 457889999999999997 7789999985 454 79999999999875
Q ss_pred CC
Q 047754 294 LP 295 (330)
Q Consensus 294 ~~ 295 (330)
..
T Consensus 297 ~~ 298 (403)
T 3k5i_A 297 HY 298 (403)
T ss_dssp TT
T ss_pred ce
Confidence 53
No 28
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.77 E-value=5.3e-17 Score=157.43 Aligned_cols=240 Identities=15% Similarity=0.193 Sum_probs=160.2
Q ss_pred CceEEEEEeccCCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC---------------------CccEEEEccCChh
Q 047754 8 PYCKIGYVFAPNKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG---------------------PFDCIMHKLYGPD 66 (330)
Q Consensus 8 ~~~~vg~~~~~~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~---------------------~~DvilhK~~~~~ 66 (330)
+..+||..-.-. ....+.++|+++|++++.+|++..-.... ..|+|..-... .
T Consensus 13 ~~k~IlIlG~G~-----~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~e~-~ 86 (389)
T 3q2o_A 13 PGKTIGIIGGGQ-----LGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEFEN-I 86 (389)
T ss_dssp TTSEEEEECCSH-----HHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESCCC-C
T ss_pred CCCEEEEECCCH-----HHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeecccc-c
Confidence 344555554332 24668899999999999999874221110 12333211111 1
Q ss_pred HHHHHHHHHHhCCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEE
Q 047754 67 WTQQLQQFSSRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIA 146 (330)
Q Consensus 67 ~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~Vv 146 (330)
...+.+.+.++ ++ +..+++++..+.||..+.++|++ .|||+|++..+.+.++... .. ..++||+|+
T Consensus 87 -~~~~~~~l~~~-g~-~~~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~--~~--~~~g~P~vv 152 (389)
T 3q2o_A 87 -DYRCLQWLEKH-AY-LPQGSQLLSKTQNRFTEKNAIEK-------AGLPVATYRLVQNQEQLTE--AI--AELSYPSVL 152 (389)
T ss_dssp -CHHHHHHHHHH-SC-CTTCSHHHHHTTSHHHHHHHHHH-------TTCCCCCEEEESSHHHHHH--HH--HHHCSSEEE
T ss_pred -cHHHHHHHHhh-Cc-cCCCHHHHHHhcCHHHHHHHHHH-------CCCCCCCeEEECCHHHHHH--HH--HhcCCCEEE
Confidence 11222333333 33 77899999999999999999986 7999999999988766542 23 568999999
Q ss_pred eeCCCCCCCCCcceEEEeChhhhhcC-----CCCeEEEecccCCCeEEEEEEECC---eEEEEEeecCCCcchhhhhccC
Q 047754 147 KPLEANGSDKSHQMYLIFDNEGLEVL-----EAPILLQEFVNHGGIIFKVYVAGS---SVKCVKRKSLPDISEEKMKSLK 218 (330)
Q Consensus 147 Kp~~a~Gs~~sh~m~iv~~~~~L~~l-----~~p~vvQefI~h~g~~~Kv~ViG~---~v~~~~R~S~~~~~~~~~~~~~ 218 (330)
||..+.| +++||.++.++++|.+. +.++++||||+ +++++.|.++++ ++.+. +-. +.....
T Consensus 153 Kp~~~~~--~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~-g~~E~~v~~~~~~~G~~~~~-----~~~---e~~~~~ 221 (389)
T 3q2o_A 153 KTTTGGY--DGKGQVVLRSEADVDEARKLANAAECILEKWVP-FEKEVSVIVIRSVSGETKVF-----PVA---ENIHVN 221 (389)
T ss_dssp EESSCCS--SSCCEEEESSGGGHHHHHHHHHHSCEEEEECCC-CSEEEEEEEEECTTCCEEEC-----CCE---EEEEET
T ss_pred EeCCCCC--CCCCeEEECCHHHHHHHHHhcCCCCEEEEeccc-CceEEEEEEEEcCCCCEEEe-----cCe---eeEEcC
Confidence 9988532 36899999999998753 47999999997 459999999965 33221 110 000001
Q ss_pred cccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 219 GFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 219 g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
+.+.. ...+..+++ .++++++|.++.++||+. ++++|++++. +|+ +||+|||.-||-.+.
T Consensus 222 g~~~~--------------~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-dg~-~~viEiNpR~~~s~~ 284 (389)
T 3q2o_A 222 NILHE--------------SIVPARITEELSQKAIAYAKVLADELELVGTLAVEMFATA-DGE-IYINELAPRPHNSGH 284 (389)
T ss_dssp TEEEE--------------EEESCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TSC-EEEEEEESSCCGGGT
T ss_pred CceEE--------------EECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CCC-EEEEEeeCCCCCchh
Confidence 11100 011222222 467889999999999997 8889999985 454 799999999997644
No 29
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.76 E-value=5.4e-17 Score=157.19 Aligned_cols=226 Identities=17% Similarity=0.200 Sum_probs=153.7
Q ss_pred chHHHHHHHHCCCeEEEeCCCCCCCc-C--------------------CCccEEEEccCChhHHHHHHHHHHhCCCceec
Q 047754 26 QPSLITKATEQGIGLIRIDPDKPLTE-Q--------------------GPFDCIMHKLYGPDWTQQLQQFSSRNPDVRII 84 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~l~~-q--------------------~~~DvilhK~~~~~~~~~l~~~~~~~p~v~vi 84 (330)
-..++.+|+++|++++.+|+...-.. + ...|+|..-..... ...+.+..+. ..+.
T Consensus 24 g~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~E~~~-~~~l~~l~~~---~~v~ 99 (377)
T 3orq_A 24 GKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENIS-AQQLKLLCEK---YNIP 99 (377)
T ss_dssp HHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESSTTSC-HHHHHHHHHH---SCCT
T ss_pred HHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceecccccC-HHHHHHHhhh---cCCC
Confidence 35688999999999999998642110 0 01354432221111 2233333333 2455
Q ss_pred ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEe
Q 047754 85 DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIF 164 (330)
Q Consensus 85 Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~ 164 (330)
.++++++.+.||..+.++|.+ .|||+|++..+.+.++... .. ..++||+|+||..+ |+ +|+|+.++.
T Consensus 100 p~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~--~~--~~~g~P~vvKp~~g-g~-~g~Gv~~v~ 166 (377)
T 3orq_A 100 QGYQAIQLLQDRLTEKETLKS-------AGTKVVPFISVKESTDIDK--AI--ETLGYPFIVKTRFG-GY-DGKGQVLIN 166 (377)
T ss_dssp TTTHHHHHHHSHHHHHHHHHH-------TTCCBCCEEEECSSTHHHH--HH--HHTCSSEEEEESSS-CC-TTTTEEEEC
T ss_pred CCHHHHHHhcCHHHHHHHHHH-------CCCCCCCeEEECCHHHHHH--HH--HHcCCCEEEEeCCC-CC-CCCCeEEEC
Confidence 788999999999999999986 7999999999988776543 23 56899999999885 33 578999999
Q ss_pred ChhhhhcC-----CCCeEEEecccCCC-eEEEEEEE-C--CeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCcc
Q 047754 165 DNEGLEVL-----EAPILLQEFVNHGG-IIFKVYVA-G--SSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADE 235 (330)
Q Consensus 165 ~~~~L~~l-----~~p~vvQefI~h~g-~~~Kv~Vi-G--~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~ 235 (330)
++++|... +.++++||||+ | +++.|.++ + +++.+. |-. +.....+.+..
T Consensus 167 ~~~el~~a~~~~~~~~~ivEe~i~--g~~E~sv~~~~~~~g~~~~~-----~~~---e~~~~~g~~~~------------ 224 (377)
T 3orq_A 167 NEKDLQEGFKLIETSECVAEKYLN--IKKEVSLTVTRGNNNQITFF-----PLQ---ENEHRNQILFK------------ 224 (377)
T ss_dssp STTSHHHHHHHHTTSCEEEEECCC--EEEEEEEEEEECGGGCEEEC-----CCE---EEEEETTEEEE------------
T ss_pred CHHHHHHHHHhcCCCcEEEEccCC--CCEEEEEEEEEeCCCCEEEE-----CCE---eEEEECCEEEE------------
Confidence 99888752 57999999995 5 89999999 3 233321 110 00000111100
Q ss_pred ccccccCCCCchHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 236 EVDLEKTEMPREGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 236 ~~~~~~~~~~~~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
...+..+++.++++++|.++.++||+. ++++|++++. +|+ +||+|||.-||-.|.
T Consensus 225 --~~~Pa~l~~~~~~~~~a~~i~~~lg~~G~~~ve~~~~~-~g~-~~v~EinpR~~~sg~ 280 (377)
T 3orq_A 225 --TIVPARIDKTAEAKEQVNKIIQSIHFIGTFTVEFFIDS-NNQ-LYVNEIAPRPHNSGH 280 (377)
T ss_dssp --EEESCSSCCHHHHHHHHHHHHTTSCCCEEEEEEEEEET-TCC-EEEEEEESSCCGGGT
T ss_pred --EECCCCCCHHHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CCc-EEEEEeeCCcCCCCc
Confidence 011222333678899999999999997 8899999985 353 799999999994443
No 30
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.75 E-value=3.9e-16 Score=152.81 Aligned_cols=228 Identities=16% Similarity=0.232 Sum_probs=144.3
Q ss_pred hHHHHHHHHCCCeEEEeCCCCC-CCcC-CCccEEEE-ccC-Ch-hHHH----------------------HHHHHHHhCC
Q 047754 27 PSLITKATEQGIGLIRIDPDKP-LTEQ-GPFDCIMH-KLY-GP-DWTQ----------------------QLQQFSSRNP 79 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~-l~~q-~~~Dvilh-K~~-~~-~~~~----------------------~l~~~~~~~p 79 (330)
+.++++|+++|++++.++...+ ...+ .-.|-.++ ... +. .+.. .+...+++.-
T Consensus 18 ~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~V~~~~e~~~~~~a~l~e~l 97 (425)
T 3vot_A 18 PFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFVEFPFDGVMTLFEPALPFTAKAAEAL 97 (425)
T ss_dssp CHHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHHHSCCSEEECCCGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhhhcCCCEEEECCchhHHHHHHHHHHc
Confidence 4578999999999999976532 1111 11222221 111 11 0111 1112222223
Q ss_pred CceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcc
Q 047754 80 DVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQ 159 (330)
Q Consensus 80 ~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 159 (330)
|++ =.+++++..++||..|.++|++ +|||+|++..+++.++.. ...++||+|+||..+. +|.|
T Consensus 98 glp-g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~------~~~~g~P~vvKp~~g~---gs~G 160 (425)
T 3vot_A 98 NLP-GLPFTTMENCRNKNKTRSILQQ-------NGLNTPVFHEFHTLADLE------NRKLSYPLVVKPVNGF---SSQG 160 (425)
T ss_dssp TCS-SCCHHHHHHHHCHHHHHHHHHH-------TTCCCCCEEEESSGGGGT------TCCCCSSEEEEESCC--------
T ss_pred CCC-CCCHHHHHHhhCHHHHHHHHHH-------CCCCCCceeccCcHHHHH------HhhcCCcEEEEECCCC---CCCC
Confidence 444 2578999999999999999986 799999999998876543 3679999999998853 5689
Q ss_pred eEEEeChhhhhcC------------------CCCeEEEecccCCCeEEEE--EEECCeEEEE--EeecCCCcchhhhhcc
Q 047754 160 MYLIFDNEGLEVL------------------EAPILLQEFVNHGGIIFKV--YVAGSSVKCV--KRKSLPDISEEKMKSL 217 (330)
Q Consensus 160 m~iv~~~~~L~~l------------------~~p~vvQefI~h~g~~~Kv--~ViG~~v~~~--~R~S~~~~~~~~~~~~ 217 (330)
|.++.++++|.+. +.++++||||+ |..|-| ++.++++.+. .++....
T Consensus 161 v~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~e~sv~~~~~~g~~~~~~~~~~~~~~--------- 229 (425)
T 3vot_A 161 VVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID--GPEFAIETLSIQGNVHVLSIGYKGNSK--------- 229 (425)
T ss_dssp CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC--SCEEEEEEEEETTEEEEEEEEEEECCC---------
T ss_pred ceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec--CcEEEEEEEEeCCcEEEEeEEEEeccC---------
Confidence 9999999888641 45899999995 677755 4556665432 2221110
Q ss_pred CcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc--EEEEEEEEeCCCCCeeEEEEeeCCCCCCC
Q 047754 218 KGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN--LFNFDLIRDAGERDGYLVIDINYLPGYAK 293 (330)
Q Consensus 218 ~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~--l~GvDvi~~~~~g~~~~ViEVN~fPg~~g 293 (330)
+.+ |.. . +...+..+++ .+.+.++|.++.++||+. .+++|++++. +|+ +|++|||.=||-.+
T Consensus 230 -~~~-~~~------~----~~~~Pa~l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~-dG~-~~~iEiN~R~gG~~ 295 (425)
T 3vot_A 230 -GPF-FEE------G----VYIAPAQLKEETRLAIVKEVTGAVSALGIHQGPAHTELRLDK-DGT-PYVIEVGARIGGSG 295 (425)
T ss_dssp -CSB-CCC------C----EEEESCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEECT-TCC-EEEEEEESSCGGGG
T ss_pred -CCc-ccc------c----eEeecccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEEe-CCc-EEEEEEecCCCCCC
Confidence 000 100 0 1112222322 456789999999999983 7889999985 554 78999999997655
Q ss_pred CCC
Q 047754 294 LPG 296 (330)
Q Consensus 294 ~~~ 296 (330)
++.
T Consensus 296 ~~~ 298 (425)
T 3vot_A 296 VSH 298 (425)
T ss_dssp HHH
T ss_pred chH
Confidence 543
No 31
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.75 E-value=9.7e-17 Score=155.63 Aligned_cols=230 Identities=19% Similarity=0.201 Sum_probs=152.5
Q ss_pred chHHHHHHHHCCCeEEEeCCCC-C--------------CC---------cCCCccEEEEccCChhHHHHHHHHHHhCCCc
Q 047754 26 QPSLITKATEQGIGLIRIDPDK-P--------------LT---------EQGPFDCIMHKLYGPDWTQQLQQFSSRNPDV 81 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~-~--------------l~---------~q~~~DvilhK~~~~~~~~~l~~~~~~~p~v 81 (330)
..+++++|+++|++++.+|... . +. ....+|+|+.-..+.. ...+.+..++. |+
T Consensus 19 ~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~~~~~~-~~~~a~~~~~~-gl 96 (403)
T 4dim_A 19 QLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATCCLDTG-IVSLARICDKE-NL 96 (403)
T ss_dssp GHHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEECCSCSTT-HHHHHHHHHHH-TC
T ss_pred HHHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEEeCCcchh-HHHHHHHHHHc-Cc
Confidence 3568899999999999998532 1 00 1235688775422222 23333333332 55
Q ss_pred eecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceE
Q 047754 82 RIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMY 161 (330)
Q Consensus 82 ~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~ 161 (330)
.-++++++..+.||..+.+++.+ .|||+|++..+.+.++... .. ..++||+|+||..+. +|.||.
T Consensus 97 -~g~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~~~~~~--~~--~~~g~P~vvKp~~g~---gg~Gv~ 161 (403)
T 4dim_A 97 -VGLNEEAAIMCGDKYKMKEAFKK-------YNVNTARHFVVRNENELKN--AL--ENLKLPVIVKATDLQ---GSKGIY 161 (403)
T ss_dssp -SSCCHHHHHHHHCHHHHHHHHHH-------HTCCCCCEECCCSHHHHHH--HH--HTSCSSEEEECSCC--------CE
T ss_pred -CCCCHHHHHHHhCHHHHHHHHHH-------cCCCCCCEEEeCCHHHHHH--HH--hcCCCCEEEEECCCC---CCCCEE
Confidence 46889999999999999999986 6999999998887665542 23 678999999999854 568999
Q ss_pred EEeChhhhhcC---------CCCeEEEecccCCCeEE--EEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCC
Q 047754 162 LIFDNEGLEVL---------EAPILLQEFVNHGGIIF--KVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNS 230 (330)
Q Consensus 162 iv~~~~~L~~l---------~~p~vvQefI~h~g~~~--Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~ 230 (330)
++.+.++|.+. +.++++||||+ |..| .+++.++++.+..... +.. . .+.. +. .
T Consensus 162 ~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~e~sv~~~~~~g~~~~~~~~~--~~~-----~-~~~~-~~-----~ 225 (403)
T 4dim_A 162 IAKKEEEAIDGFNETMNLTKRDYCIVEEFIE--GYEFGAQAFVYKNDVLFVMPHG--DET-----Y-MSHT-AV-----P 225 (403)
T ss_dssp EESSHHHHHHHHHHHHHHCSSSCCEEEECCC--SEEEEEEEEEETTEEEEEEEEE--EEE-----E-ESSS-EE-----E
T ss_pred EECCHHHHHHHHHHHHhcCcCCcEEEEEccC--CcEEEEEEEEECCEEEEEEEec--cee-----c-cCCC-Cc-----c
Confidence 99999988652 46899999996 5666 4555678876543111 000 0 0000 00 0
Q ss_pred CCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc--EEEEEEEEeCCCCCeeEEEEeeCCCCCCCCCC
Q 047754 231 VDADEEVDLEKTEMPR--EGFVVELSRALREALGLN--LFNFDLIRDAGERDGYLVIDINYLPGYAKLPG 296 (330)
Q Consensus 231 ~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~--l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~~ 296 (330)
. +...+..+++ .+.+.++|.++.++||+. .+++|+++++ + .+|++|||.-||-.+++.
T Consensus 226 ~-----~~~~p~~l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~~--~-~~~~iEiN~R~~~~~~~~ 287 (403)
T 4dim_A 226 V-----GHYVPLDVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILKD--N-EVYIIELTGRVGANCLPE 287 (403)
T ss_dssp E-----EEEESCCSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEET--T-EEEEEEEESSCCSTTHHH
T ss_pred e-----eEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEEEC--C-cEEEEEEcCCCCCCcHHH
Confidence 0 1111222222 467889999999999997 5789999973 3 489999999999766554
No 32
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.75 E-value=1.4e-16 Score=153.12 Aligned_cols=224 Identities=13% Similarity=0.119 Sum_probs=153.9
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCC-cC-------------------CCccEEEEccCChhHHHHHHHHHHhCCCceecCh
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLT-EQ-------------------GPFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDP 86 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~-~q-------------------~~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp 86 (330)
..+.++++++|++++.+|++.... .+ ..+|+++.-..... ...++ .+++. | ++.++
T Consensus 12 ~~~~~a~~~~G~~v~~~~~~~~~~~~~~a~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~~-~~~~~-~l~~~-g-~~g~~ 87 (369)
T 3aw8_A 12 RMLALAGYPLGLSFRFLDPSPEACAGQVGELVVGEFLDEGALLRFAEGLALVTYEFENVP-VEAAR-RLEGR-L-PLYPP 87 (369)
T ss_dssp HHHHHHHTTBTCCEEEEESCTTCGGGGTSEEEECCTTCHHHHHHHHTTCSEEEECCTTCC-HHHHH-HHHHH-S-CBSSC
T ss_pred HHHHHHHHHcCCEEEEEeCCCCChHHHhhceEecCCCCHHHHHHHHhCCCEEEECCCCcC-HHHHH-HHHHc-C-CcCCC
Confidence 567888999999999999873221 00 24677775443322 22233 33332 5 78899
Q ss_pred HHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCC-CCCCCcceEEEeC
Q 047754 87 PESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEAN-GSDKSHQMYLIFD 165 (330)
Q Consensus 87 ~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~-Gs~~sh~m~iv~~ 165 (330)
++++..++||..+.++|.+ .|||+|++..+.+.++... .+ ..++||+|+||..++ | |.|+.++.+
T Consensus 88 ~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~--~~--~~~g~P~vvKp~~~~~~---g~Gv~~v~~ 153 (369)
T 3aw8_A 88 AKALEVAQDRLREKTFFQG-------LGVPTPPFHPVDGPEDLEE--GL--KRVGLPALLKTRRGGYD---GKGQALVRT 153 (369)
T ss_dssp HHHHHHHTCHHHHHHHHHH-------HTCCCCCEEEESSHHHHHH--HH--TTTCSSEEEEECCC---------EEEECS
T ss_pred HHHHHHhcCHHHHHHHHHH-------CCCCCCCceeeCCHHHHHH--HH--HHcCCCEEEEEcCCCCC---cceEEEECC
Confidence 9999999999999999986 6999999999988765532 23 568999999999864 4 579999999
Q ss_pred hhhhhcC-----CCCeEEEecccCCCeEEEEEEECC---eEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCcccc
Q 047754 166 NEGLEVL-----EAPILLQEFVNHGGIIFKVYVAGS---SVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEV 237 (330)
Q Consensus 166 ~~~L~~l-----~~p~vvQefI~h~g~~~Kv~ViG~---~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~ 237 (330)
.++|.+. ..++++||||+. |+++.|.++++ ++.+. +-.. .+. ..+++..
T Consensus 154 ~~el~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~-----~~~~--~~~-~~~~~~~-------------- 210 (369)
T 3aw8_A 154 EEEALEALKALGGRGLILEGFVPF-DREVSLLAVRGRTGEVAFY-----PLVE--NRH-WGGILRL-------------- 210 (369)
T ss_dssp HHHHHHHHTTTCSSSEEEEECCCC-SEEEEEEEEECTTSCEEEC-----CCEE--EEE-ETTEEEE--------------
T ss_pred HHHHHHHHHhcCCCcEEEEEcCCC-CEEEEEEEEECCCCCEEEE-----CCee--eee-eCCEEEE--------------
Confidence 9888753 468999999963 89999999974 44321 1100 000 0011111
Q ss_pred ccccCC-CCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 238 DLEKTE-MPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 238 ~~~~~~-~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
...+.. +++ .+.++++|.++.++||+. ++++|++++. + .++++|||.-||..+.
T Consensus 211 ~~~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~--~-~~~viEiN~R~~~~~~ 268 (369)
T 3aw8_A 211 SLAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQVG--E-ELLFNEMAPRVHNSGH 268 (369)
T ss_dssp EEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEESSCCGGGT
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC--C-cEEEEEEeCCcCCccc
Confidence 011121 222 457789999999999997 7789999985 3 4799999999987654
No 33
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.74 E-value=1.1e-16 Score=154.53 Aligned_cols=226 Identities=13% Similarity=0.178 Sum_probs=153.2
Q ss_pred chHHHHHHHHCCCeEEEeCCCCCCCc-----------------------CCCccEEEEccCChhHHHHHHHHHHhCCCce
Q 047754 26 QPSLITKATEQGIGLIRIDPDKPLTE-----------------------QGPFDCIMHKLYGPDWTQQLQQFSSRNPDVR 82 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~l~~-----------------------q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~ 82 (330)
..+++++++++|++++.+|....... +..+|+|+.-.-... .+ +.+.+++ -|++
T Consensus 23 ~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~e~~~-~~-~~~~l~~-~gi~ 99 (391)
T 1kjq_A 23 GKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAIA-TD-MLIQLEE-EGLN 99 (391)
T ss_dssp HHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSCSC-HH-HHHHHHH-TTCE
T ss_pred HHHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCCEEEECCCcCC-HH-HHHHHHh-CCCC
Confidence 36788999999999999998632110 124677776432211 12 2233333 3777
Q ss_pred ecChHHHHHHhcCHHHHHHHH-HhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceE
Q 047754 83 IIDPPESIERLHNRDSMLEVV-SRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMY 161 (330)
Q Consensus 83 viDp~~ai~~~~dR~~~~~~L-~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~ 161 (330)
+.+++++++.+.||..+.+++ ++ .|||+|++..+.+.++... .+ ..++||+|+||..+. +|.|+.
T Consensus 100 ~~~~~~~~~~~~dK~~~~~~l~~~-------~gip~p~~~~~~~~~~~~~--~~--~~~g~P~vvKp~~g~---gg~Gv~ 165 (391)
T 1kjq_A 100 VVPCARATKLTMNREGIRRLAAEE-------LQLPTSTYRFADSESLFRE--AV--ADIGYPCIVKPVMSS---SGKGQT 165 (391)
T ss_dssp ESSCHHHHHHHHSHHHHHHHHHTT-------SCCCBCCEEEESSHHHHHH--HH--HHHCSSEEEEESCC------CCCE
T ss_pred cCCCHHHHHHhhCHHHHHHHHHHh-------CCCCCCCeeeeCCHHHHHH--HH--HhcCCCEEEEeCCCC---CCCCeE
Confidence 889999999999999999998 54 7999999999988765432 22 458999999998743 568999
Q ss_pred EEeChhhhhcC-----------CCCeEEEecccCCCeEEEEEEECC--eEEEEEeecCCCcchhhhhccCcccccCCccc
Q 047754 162 LIFDNEGLEVL-----------EAPILLQEFVNHGGIIFKVYVAGS--SVKCVKRKSLPDISEEKMKSLKGFLPFSQISS 228 (330)
Q Consensus 162 iv~~~~~L~~l-----------~~p~vvQefI~h~g~~~Kv~ViG~--~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~ 228 (330)
++.+.++|... +.++++||||+. |.++.|.++++ .+... ....+.. ..+.+.. +
T Consensus 166 ~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~g~~~~--~~~~~~~--------~~~~~~~--~ 232 (391)
T 1kjq_A 166 FIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-DFEITLLTVSAVDGVHFC--APVGHRQ--------EDGDYRE--S 232 (391)
T ss_dssp EECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-SEEEEEEEEEETTEEEEC--CCEEEEE--------ETTEEEE--E
T ss_pred EECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-CeEEEEEEEEeCCCeEEc--cCcceEE--------ECCEEEE--E
Confidence 99999887641 468999999974 88999988853 32110 0000000 0011110 0
Q ss_pred CCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 229 NSVDADEEVDLEKTEMPR--EGFVVELSRALREALGL-NLFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
+ .+..+++ .++++++|.++.++||+ .++++|++++.+ .+||+|||.-||..+.
T Consensus 233 ~----------~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~~~ 288 (391)
T 1kjq_A 233 W----------QPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCGD---EVIFSEVSPRPHDTGM 288 (391)
T ss_dssp E----------ECCCCCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEETT---EEEEEEEESSCCGGGG
T ss_pred E----------eCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEECCCCCCcc
Confidence 0 1122222 45788999999999999 577899999853 4799999999996654
No 34
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.74 E-value=2.1e-17 Score=158.37 Aligned_cols=222 Identities=13% Similarity=0.160 Sum_probs=131.5
Q ss_pred chHHHHHHHHCCCeEEEeCCCCCCC--c--C------------CCccEEEEccCChhHHHHHHHHHHhCCCceecChHHH
Q 047754 26 QPSLITKATEQGIGLIRIDPDKPLT--E--Q------------GPFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDPPES 89 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~l~--~--q------------~~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp~~a 89 (330)
...++++++++|++++.+|.+.... . . ..+|+++....+.. .. +.+.+.. ++.+++++
T Consensus 13 ~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~v~~~~e~~~-~~-~~~~l~~----~~g~~~~~ 86 (365)
T 2z04_A 13 GWMTILEGRKLGFKFHVLEDKENAPACRVADRCFRTGQISEFVDSCDIITYEFEHIK-DE-VLEKCES----KLIPNPQA 86 (365)
T ss_dssp HHHHHHHHGGGTCEEEEECSSSSCHHHHHSSEEECGGGHHHHHHHCSEEEESSSCCC-HH-HHHHHTT----TBSSCTHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchhhhccceeeHHHHHHHhhcCCEEEECCCCCc-HH-HHHHHhh----hcCCCHHH
Confidence 4668899999999999999874321 0 0 14688887654332 22 3333322 77889999
Q ss_pred HHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCC-CCCCCcceEEEeChhh
Q 047754 90 IERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEAN-GSDKSHQMYLIFDNEG 168 (330)
Q Consensus 90 i~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~-Gs~~sh~m~iv~~~~~ 168 (330)
+..+.||..+.++|++ .|||+|++..+. .++... .+ ..++||+|+||..++ | |.|+.++.+.++
T Consensus 87 ~~~~~dK~~~~~~l~~-------~gip~p~~~~~~-~~~~~~--~~--~~~~~P~vvKp~~~~~~---g~Gv~~v~~~~e 151 (365)
T 2z04_A 87 LYVKKSRIREKLFLKK-------HGFPVPEFLVIK-RDEIID--AL--KSFKLPVVIKAEKLGYD---GKGQYRIKKLED 151 (365)
T ss_dssp HHHHTCHHHHHHHHHT-------TTCCCCCEEEC-------------------CEEEECC--------------------
T ss_pred HHHhhCHHHHHHHHHH-------cCCCCCCEEEEc-HHHHHH--HH--HhcCCCEEEEEcCCCcC---CCCeEEECCHHH
Confidence 9999999999999986 799999999887 554432 22 468899999999864 4 478999999988
Q ss_pred hhcC------CCCeEEEecccCCCeEEEEEEECC---eEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCcccccc
Q 047754 169 LEVL------EAPILLQEFVNHGGIIFKVYVAGS---SVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDL 239 (330)
Q Consensus 169 L~~l------~~p~vvQefI~h~g~~~Kv~ViG~---~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~ 239 (330)
+.+. +.++++||||+. |+++.|.++++ ++.+. +-. ..+.. .+.+.. ..
T Consensus 152 l~~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~-----~~~--~~~~~-~~~~~~--------------~~ 208 (365)
T 2z04_A 152 ANQVVKNHDKEESFIIEEFVKF-EAEISCIGVRDREGKTYFY-----PQP--FNKHE-EGILIY--------------NY 208 (365)
T ss_dssp -------------CEEEECCCC-SEEEEEEEEECTTCCEEEC-----CEE--EEEEE-TTEEEE--------------EE
T ss_pred HHHHHHHhccCCCEEEEccCCC-CEEEEEEEEECCCCCEEEE-----CCE--EEEEe-CCEeEE--------------EE
Confidence 8753 368999999964 89999999963 44321 100 00000 011110 01
Q ss_pred ccCCCCchHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCCC
Q 047754 240 EKTEMPREGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKLP 295 (330)
Q Consensus 240 ~~~~~~~~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~~ 295 (330)
.+..+ .+.++++|.++.++||+. ++++|++++. +|+ ++++|||.-||..+..
T Consensus 209 ~p~~~--~~~~~~~~~~~~~~lg~~G~~~vd~~~~~-~g~-~~~iEiN~R~~~~~~~ 261 (365)
T 2z04_A 209 VPYAK--LKEAEEITKRLMELLDIVGVFTVEFFLLK-DGR-VLINEFAPRVHNTGHW 261 (365)
T ss_dssp EEEEC--CHHHHHHHHHHHHHTTCCEEEEEEEEECT-TSC-EEEEEEESSCCGGGTT
T ss_pred CCHhH--HHHHHHHHHHHHHHcCCEEEEEEEEEEeC-CCc-EEEEEeccCcCCCceE
Confidence 11111 567899999999999996 7789999984 454 7999999999886653
No 35
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.73 E-value=1.5e-16 Score=156.07 Aligned_cols=228 Identities=12% Similarity=0.193 Sum_probs=151.7
Q ss_pred chHHHHHHHHCCCeEEEeCCCCCC--------------Cc---------CCCccEEEEccCChhHHHHHHHHHHhCCCce
Q 047754 26 QPSLITKATEQGIGLIRIDPDKPL--------------TE---------QGPFDCIMHKLYGPDWTQQLQQFSSRNPDVR 82 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~l--------------~~---------q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~ 82 (330)
...++++++++|++++.+|....- .+ +..+|+|+.-..... .. +.+.+++ -|++
T Consensus 31 g~~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e~~~-~~-~~~~l~~-~gi~ 107 (433)
T 2dwc_A 31 GKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAIN-LD-ALFEFEK-DGYF 107 (433)
T ss_dssp HHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSCSC-HH-HHHHHHH-TTCC
T ss_pred HHHHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHHcCCCEEEECcccCC-HH-HHHHHHh-cCCe
Confidence 356888999999999999986321 00 125788877554322 22 2233333 3677
Q ss_pred ecChHHHHHHhcCHHHHHHHH-HhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceE
Q 047754 83 IIDPPESIERLHNRDSMLEVV-SRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMY 161 (330)
Q Consensus 83 viDp~~ai~~~~dR~~~~~~L-~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~ 161 (330)
+.+++++++.+.||..+.++| ++ .|||+|++..+.+.++... .+ ..++||+|+||..+. +|.|+.
T Consensus 108 ~~~~~~~~~~~~dK~~~k~~l~~~-------~gip~p~~~~~~~~~~~~~--~~--~~~g~P~vvKp~~g~---gg~Gv~ 173 (433)
T 2dwc_A 108 VVPNARATWIAMHRERLRETLVKE-------AKVPTSRYMYATTLDELYE--AC--EKIGYPCHTKAIMSS---SGKGSY 173 (433)
T ss_dssp BSSCHHHHHHHHCHHHHHHHHHHT-------SCCCCCCEEEESSHHHHHH--HH--HHHCSSEEEEECCC---------E
T ss_pred eCCCHHHHHHhhCHHHHHHHHHHh-------cCCCCCCeeEeCCHHHHHH--HH--HhcCCCEEEEECCCc---CCCCeE
Confidence 789999999999999999998 65 7999999999988765432 22 457899999998743 568999
Q ss_pred EEeChhhhhcC-----------CCCeEEEecccCCCeEEEEEEEC-----CeEEEEEeecCCCcchhhhhccCcccccCC
Q 047754 162 LIFDNEGLEVL-----------EAPILLQEFVNHGGIIFKVYVAG-----SSVKCVKRKSLPDISEEKMKSLKGFLPFSQ 225 (330)
Q Consensus 162 iv~~~~~L~~l-----------~~p~vvQefI~h~g~~~Kv~ViG-----~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~ 225 (330)
++.++++|... +.++++||||+. |.++.|.+++ +++....-+...+. ...+. +..
T Consensus 174 ~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~~~G~~~~~~~~~~~~~------~~~~~--~~~ 244 (433)
T 2dwc_A 174 FVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-DVEVTELAVRHFDENGEIVTTFPKPVGHY------QIDGD--YHA 244 (433)
T ss_dssp EECSGGGHHHHHHC---------CCEEEEECCCC-SEEEEECCEEEECTTSCEEEEEECCEEEE------ESSSS--EEE
T ss_pred EECCHHHHHHHHHHHHhhcccCCCCEEEEccCCC-CeeEEEEEEecccCCCCEeEEEecccceE------EEcCE--EEE
Confidence 99999888642 368999999964 8999998874 34321111111100 00011 100
Q ss_pred cccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 226 ISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGL-NLFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 226 ~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
++ .+..+++ .+.++++|.++.++||+ .++++|++++.+ .+||+|||.-||..+.
T Consensus 245 --~~----------~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~~~ 301 (433)
T 2dwc_A 245 --SW----------QPAEISEKAEREVYRIAKRITDVLGGLGIFGVEMFVKGD---KVWANEVSPRPHDTGM 301 (433)
T ss_dssp --EE----------ESCCCCHHHHHHHHHHHHHHHHHHCSSEECEEEEEEETT---EEEEEEEESSCCGGGG
T ss_pred --EE----------cCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEeCCcCCCcc
Confidence 00 1222222 45788999999999999 577899999853 4799999999996654
No 36
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.72 E-value=3.2e-16 Score=150.20 Aligned_cols=210 Identities=16% Similarity=0.211 Sum_probs=141.6
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCC-----c-----------------CCCccEEEEccCChhHHHHHHHHHHhCCCceec
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLT-----E-----------------QGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRII 84 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~-----~-----------------q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~vi 84 (330)
..+..+|+++|++++.+|.+.... + ....|+|+.-...... ..+...+.+..++++.
T Consensus 14 ~~~~~~Ak~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~-~~~~~~~~~~~~~~~g 92 (363)
T 4ffl_A 14 FEAAYLSKKAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPVNENLAC-IEFLNSIKEKFSCPVL 92 (363)
T ss_dssp HHHHHHHHHTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEECCCCHHH-HHHHHHHGGGCSSCBC
T ss_pred HHHHHHHHHCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEECCCChhH-HHHHHHHHHHCCCccC
Confidence 457888999999999999874211 0 0235666654443332 2233344455678889
Q ss_pred ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEe
Q 047754 85 DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIF 164 (330)
Q Consensus 85 Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~ 164 (330)
.++++++.++||..+.++|.+ .+||+|.+ ..++||+|+||..+. +|.+|.++.
T Consensus 93 ~~~~a~~~~~dK~~~k~~l~~-------~gip~~~~-----------------~~ig~P~vvKp~~g~---g~~gv~~v~ 145 (363)
T 4ffl_A 93 FDFEAYRISRDKKKSKDYFKS-------IGVPTPQD-----------------RPSKPPYFVKPPCES---SSVGARIIY 145 (363)
T ss_dssp CCHHHHHHHTSHHHHHHHHHH-------TTCCCCCB-----------------SCSSSCEEEECSSCC---TTTTCEEEC
T ss_pred CCHHHHHHhhCHHHHHHHHHh-------cCCCCCCc-----------------eecCCCEEEEECCCC---CCcCeEEec
Confidence 999999999999999999987 79999975 237899999998754 468999999
Q ss_pred ChhhhhcCCCCeEEEecccCCCeEEEEEEECCeEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCC
Q 047754 165 DNEGLEVLEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEM 244 (330)
Q Consensus 165 ~~~~L~~l~~p~vvQefI~h~g~~~Kv~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~ 244 (330)
+.+++......+++|||| .|+.+-|.++++.-.... .+... +.. .+ .... ....+.
T Consensus 146 ~~~~~~~~~~~~~~ee~i--~g~e~sv~~~~d~~~~~~---~~~~~--~~~-------~~---~~~~-----~~~~p~-- 201 (363)
T 4ffl_A 146 DDKDLEGLEPDTLVEEYV--EGEVVSLEVVGDGSHFAV---VKETL--VHI-------DE---TYDC-----HMVTPL-- 201 (363)
T ss_dssp ------CCCTTCEEEECC--CSEEEEEEEEEESSCEEE---CCCEE--EEE-------CT---TSCE-----EEEEEC--
T ss_pred cHHHhhhhccchhhhhhc--cCcEEEEEEEEECCeEEE---EEEEE--ecc-------CC---cccc-----eeecch--
Confidence 999999999999999999 588998888865321111 01000 000 00 0000 011122
Q ss_pred CchHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeC-CCCC
Q 047754 245 PREGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINY-LPGY 291 (330)
Q Consensus 245 ~~~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~-fPg~ 291 (330)
+..++++++|.++.++||+. ++++|+++++ + .+||+|||. |||.
T Consensus 202 ~~~~~~~~~a~~~~~~l~~~G~~~vef~~~~-~--~~~viEiN~R~~g~ 247 (363)
T 4ffl_A 202 PANPLFRQISHDLAANLPLKGIMDVEAIFGP-K--GLRVIEIDARFPSQ 247 (363)
T ss_dssp CCCHHHHHHHHHHHHTTTCEEEEEEEEEEET-T--EEEEEEEECSCCSS
T ss_pred hHHHHHHHHHHHHHHhCCccceeeeeeEEeC-C--eEEEEEEeCCCCCC
Confidence 23567899999999999997 6679999985 2 479999999 8884
No 37
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.72 E-value=5.3e-16 Score=149.60 Aligned_cols=223 Identities=12% Similarity=0.059 Sum_probs=155.3
Q ss_pred chHHHHHHHHCCCeEEEeCCCCC--CCcCC-CccEEEEccCChhHHHHHHHHHHhCCCceecChHHHHHHhcCHHHHHHH
Q 047754 26 QPSLITKATEQGIGLIRIDPDKP--LTEQG-PFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDPPESIERLHNRDSMLEV 102 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~--l~~q~-~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~~~~~ 102 (330)
.+.+..+|+++|+++ +|++.+ -...+ ..|+|..-...-. ...++. +++. + .+..+++++..++||..+-++
T Consensus 13 g~m~~~aa~~lG~~v--~~~~~~a~~~~~~l~~d~it~e~e~v~-~~~l~~-l~~~-~-~v~p~~~a~~~~~DK~~~k~~ 86 (355)
T 3eth_A 13 GRMLRQAGEPLGIAV--WPVGLDAEPAAVPFQQSVITAEIERWP-ETALTR-QLAR-H-PAFVNRDVFPIIADRLTQKQL 86 (355)
T ss_dssp HHHHHHHHGGGTCEE--EEECTTCCGGGCCCTTSEEEESCSCCC-CCHHHH-HHHT-C-TTBTTTTHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHCCCEE--ECCCCCCCceEEcccCCEEEECcCCcC-HHHHHH-HHhc-C-CcCCCHHHHHHhcCHHHHHHH
Confidence 356888999999999 566532 11111 5677776654322 122333 3333 4 789999999999999999999
Q ss_pred HHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeC--hhhhhc--CCCCeEE
Q 047754 103 VSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFD--NEGLEV--LEAPILL 178 (330)
Q Consensus 103 L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~--~~~L~~--l~~p~vv 178 (330)
|++ .|||+|++..+.+.++... .. ..++||+|+||..+ |+ +++|+.++.+ +++|.+ ++ ++++
T Consensus 87 l~~-------~GIptp~~~~v~~~~e~~~--~~--~~~G~P~VvKp~~~-G~-~GkGv~~v~~~~~~el~~a~~~-~viv 152 (355)
T 3eth_A 87 FDK-------LHLPTAPWQLLAERSEWPA--VF--DRLGELAIVKRRTG-GY-DGRGQWRLRANETEQLPAECYG-ECIV 152 (355)
T ss_dssp HHH-------TTCCBCCEEEECCGGGHHH--HH--HHHCSEEEEEESSS-CC-TTTTEEEEETTCGGGSCGGGTT-TEEE
T ss_pred HHH-------CccCCCCEEEECCHHHHHH--HH--HHcCCCEEEEecCC-CC-CCCeEEEEcCCCHHHHHHHhhC-CEEE
Confidence 986 7999999999988766542 23 56899999999984 45 5799999999 988875 34 7999
Q ss_pred EecccCCCeEEEEEEECC---eEEEEEeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHH
Q 047754 179 QEFVNHGGIIFKVYVAGS---SVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVEL 253 (330)
Q Consensus 179 QefI~h~g~~~Kv~ViG~---~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~l 253 (330)
|+||+ +++.+-|.++++ ++.+ .|-. +.....|.+... ..+..+++ .++++++
T Consensus 153 Ee~I~-~~~Eisv~v~~~~~G~~~~-----~p~~---e~~~~~g~~~~~--------------~~pa~l~~~~~~~~~~~ 209 (355)
T 3eth_A 153 EQGIN-FSGEVSLVGARGFDGSTVF-----YPLT---HNLHQDGILRTS--------------VAFPQANAQQQARAEEM 209 (355)
T ss_dssp EECCC-CSEEEEEEEEECTTSCEEE-----CCCE---EEEEETTEEEEE--------------EECSSCCHHHHHHHHHH
T ss_pred EEccC-CCcEEEEEEEEcCCCCEEE-----ECCE---EEEeeCCeEEEE--------------ECCCCCCHHHHHHHHHH
Confidence 99997 478999999853 3322 1110 000001111110 01122222 4678899
Q ss_pred HHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 254 SRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 254 A~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
|.++.++||.. ++++|+++++ + .+||+|||.=|+-.|.
T Consensus 210 a~~i~~aLg~~G~~~vEf~~~~--~-~~~v~EinpR~~~sg~ 248 (355)
T 3eth_A 210 LSAIMQELGYVGVMAMECFVTP--Q-GLLINELAPRVHNSGH 248 (355)
T ss_dssp HHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEESSCCGGGT
T ss_pred HHHHHHHCCCeeEEEEEEEEEC--C-cEEEEEeeCCCCCCcc
Confidence 99999999996 7889999984 3 4899999999997655
No 38
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.72 E-value=3.2e-16 Score=154.13 Aligned_cols=226 Identities=11% Similarity=0.126 Sum_probs=155.2
Q ss_pred chHHHHHHHHCCCeEEEeCCCCCCC-----c---CC-------------CccEEEEccCChhHHHHHHHHHHhCCCceec
Q 047754 26 QPSLITKATEQGIGLIRIDPDKPLT-----E---QG-------------PFDCIMHKLYGPDWTQQLQQFSSRNPDVRII 84 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~l~-----~---q~-------------~~DvilhK~~~~~~~~~l~~~~~~~p~v~vi 84 (330)
...++.+|+++|++++.+|.+..-. + .. ..|+|+.-.-... ..+.+.+++. .++.
T Consensus 47 g~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~~~e~~~--~~~~~~l~~~--~~vg 122 (419)
T 4e4t_A 47 GRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVSTEFENVP--AASLDFLART--TFVA 122 (419)
T ss_dssp HHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEECCTTCC--HHHHHHHHTT--SEES
T ss_pred HHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEEccCcCC--HHHHHHHHcc--CCcC
Confidence 4668899999999999999763210 0 01 2467763322211 2333344444 5888
Q ss_pred ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhc----CCCcEEEeeCCCCCCCCCcce
Q 047754 85 DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELK----LRFPLIAKPLEANGSDKSHQM 160 (330)
Q Consensus 85 Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~----l~fP~VvKp~~a~Gs~~sh~m 160 (330)
.++++++.+.||..+.++|.+ .|||+|++..+.+.++... .. .. + ||+|+||..+ |+ ++.|+
T Consensus 123 p~~~a~~~~~dK~~~k~~l~~-------~Gip~p~~~~v~~~~e~~~--~~--~~~~~~~-~P~VvKp~~~-g~-~G~Gv 188 (419)
T 4e4t_A 123 PAGRCVAVAQDRIAEKRFIEA-------SGVPVAPHVVIESAAALAA--LD--DAALDAV-LPGILKTARL-GY-DGKGQ 188 (419)
T ss_dssp SCHHHHHHHTCHHHHHHHHHH-------TTCCBCCEEEECSHHHHHT--SC--HHHHHTT-CSEEEEESSS-CC-TTTTE
T ss_pred CCHHHHHHhcCHHHHHHHHHH-------cCcCCCCeEEECCHHHHHH--HH--Hhhcccc-CCEEEEecCC-CC-CCCce
Confidence 999999999999999999986 7999999999988665432 12 33 7 9999999842 34 57899
Q ss_pred EEEeChhhhhcC-----CCCeEEEecccCCCeEEEEEEECC---eEEEEEeecCCCcchhhhhccCcccccCCcccCCCC
Q 047754 161 YLIFDNEGLEVL-----EAPILLQEFVNHGGIIFKVYVAGS---SVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVD 232 (330)
Q Consensus 161 ~iv~~~~~L~~l-----~~p~vvQefI~h~g~~~Kv~ViG~---~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~ 232 (330)
.++.++++|... +.++++||||+. ++.+.|.++++ ++.. .|-. +.....+.+..
T Consensus 189 ~~v~~~~el~~a~~~~~~~~~lvEe~i~~-~~Eisv~v~~~~~G~~~~-----~~~~---e~~~~~g~~~~--------- 250 (419)
T 4e4t_A 189 VRVSTAREARDAHAALGGVPCVLEKRLPL-KYEVSALIARGADGRSAA-----FPLA---QNVHHNGILAL--------- 250 (419)
T ss_dssp EEECSHHHHHHHHHHTTTCCEEEEECCCE-EEEEEEEEEECTTSCEEE-----CCCE---EEEEETTEEEE---------
T ss_pred EEECCHHHHHHHHHhcCCCcEEEeecCCC-CeEEEEEEEEcCCCCEEE-----EeCe---EEEeeCCeEEE---------
Confidence 999999988753 478999999963 78999999953 3321 1110 00000011110
Q ss_pred CccccccccCC-CCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCCCCCC
Q 047754 233 ADEEVDLEKTE-MPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPGYAKL 294 (330)
Q Consensus 233 ~~~~~~~~~~~-~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg~~g~ 294 (330)
...+.. +++ .++++++|.++.++||+. ++++|++++. +|+ +||+|||.=||-.+.
T Consensus 251 -----~~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~-dG~-~~v~EiNpR~~~sg~ 309 (419)
T 4e4t_A 251 -----TIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLE-DGS-FVANEMAPRPHNSGH 309 (419)
T ss_dssp -----EEESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TCC-EEEEEEESSCCGGGT
T ss_pred -----EEcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEeC-CCC-EEEEEEeCCCCCCCC
Confidence 011222 222 467889999999999997 7889999985 454 799999999997554
No 39
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.68 E-value=2.4e-15 Score=148.33 Aligned_cols=224 Identities=16% Similarity=0.234 Sum_probs=149.4
Q ss_pred chHHHHHHHHCCCeEEEeCCCCC--CC-----c-------------------------CCCccEEEEccCCh-hHHHHHH
Q 047754 26 QPSLITKATEQGIGLIRIDPDKP--LT-----E-------------------------QGPFDCIMHKLYGP-DWTQQLQ 72 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~--l~-----~-------------------------q~~~DvilhK~~~~-~~~~~l~ 72 (330)
..+++++|+++|++++.++.+.+ -. + +...|+|+.-.... .. ..+.
T Consensus 18 a~~i~~aa~~~G~~~v~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~i~p~~g~~~e~-~~~~ 96 (446)
T 3ouz_A 18 ALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAAAEIAEADAIFPGYGFLSEN-QNFV 96 (446)
T ss_dssp HHHHHHHHHHTTCEEEEEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHHHHHHTCSEEECCSSTTTTC-HHHH
T ss_pred HHHHHHHHHHcCCEEEEEEcCcccccchHhhCCEEEEcCCCCccccccCHHHHHHHHHHhCcCEEEECCcccccC-HHHH
Confidence 45789999999999999953311 00 0 01245554321110 11 2233
Q ss_pred HHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE--EecCchhhhhhHHHHHhcCCCcEEEeeC
Q 047754 73 QFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQA--VVSETELVTRDMAIEELKLRFPLIAKPL 149 (330)
Q Consensus 73 ~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~l~~~~l~fP~VvKp~ 149 (330)
+.+.+ .|++++ .++++++.+.||..+.++|.+ .|||+|++. .+.+.++... .. ..++||+|+||.
T Consensus 97 ~~~~~-~g~~~~g~~~~~~~~~~dK~~~~~~l~~-------~Gip~p~~~~~~~~~~~e~~~--~~--~~~g~PvvvKp~ 164 (446)
T 3ouz_A 97 EICAK-HNIKFIGPSVEAMNLMSDKSKAKQVMQR-------AGVPVIPGSDGALAGAEAAKK--LA--KEIGYPVILKAA 164 (446)
T ss_dssp HHHHH-TTCEESSCCHHHHHHHHSHHHHHHHHHH-------TTCCBCSBCSSSCCSHHHHHH--HH--HHHCSSEEEEET
T ss_pred HHHHH-CCCceECcCHHHHHHhCCHHHHHHHHHH-------cCCCcCCCcccCCCCHHHHHH--HH--HHhCCCEEEEEC
Confidence 34444 378887 789999999999999999986 799999997 6666655432 22 568999999999
Q ss_pred CCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECC---eEEEE-Eee-cCCCcch
Q 047754 150 EANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGS---SVKCV-KRK-SLPDISE 211 (330)
Q Consensus 150 ~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~---~v~~~-~R~-S~~~~~~ 211 (330)
.++ +|.||.++.++++|... +.++++||||+ +.+.+.|.++++ +++.. .|. +...
T Consensus 165 ~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~~~~~--- 237 (446)
T 3ouz_A 165 AGG---GGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQ-NPRHIEVQVIGDSFGNVIHVGERDCSMQR--- 237 (446)
T ss_dssp TCC---TTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCS-SCEEEEEEEEECTTSCEEEEEEEEEEEEE---
T ss_pred CCC---CCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeeceeeeee---
Confidence 854 56899999999888652 56899999996 238899999865 33322 221 1100
Q ss_pred hhhhccCcccccCCcccCCCCCccccccccC-CCCc--hHHHHHHHHHHHHHhCCcE-EEEEEEEeCCCCCeeEEEEeeC
Q 047754 212 EKMKSLKGFLPFSQISSNSVDADEEVDLEKT-EMPR--EGFVVELSRALREALGLNL-FNFDLIRDAGERDGYLVIDINY 287 (330)
Q Consensus 212 ~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~-~~~~--~~~~~~lA~~~~~~LGl~l-~GvDvi~~~~~g~~~~ViEVN~ 287 (330)
.+. +. ....+. .++. .+.+.++|.++.++||+.- +++|++++. +|+ +|++|||.
T Consensus 238 -----------~~~--~~-------~~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~-~g~-~~~iEiNp 295 (446)
T 3ouz_A 238 -----------RHQ--KL-------IEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDK-NLD-FYFIEMNT 295 (446)
T ss_dssp -----------TTE--EE-------EEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCC-EEEEEEES
T ss_pred -----------cCc--eE-------EEECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEeC-CCC-EEEEEeEC
Confidence 000 00 000111 1221 4678899999999999974 559999986 353 79999999
Q ss_pred CCCC
Q 047754 288 LPGY 291 (330)
Q Consensus 288 fPg~ 291 (330)
=|+-
T Consensus 296 R~~g 299 (446)
T 3ouz_A 296 RLQV 299 (446)
T ss_dssp SCCT
T ss_pred CCCC
Confidence 8864
No 40
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.67 E-value=1.8e-15 Score=142.68 Aligned_cols=179 Identities=19% Similarity=0.216 Sum_probs=124.6
Q ss_pred CCccEEEEccCChh-HHHHHHHHHHhCCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhh
Q 047754 53 GPFDCIMHKLYGPD-WTQQLQQFSSRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTR 131 (330)
Q Consensus 53 ~~~DvilhK~~~~~-~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~ 131 (330)
.++|+++.-..+.. ..+.+.+.+.. +|.++.+++++++.++||..+.++++ . ||++|++.+
T Consensus 68 ~~~D~~~~i~~~ed~~l~~~~~~l~~-~g~~~g~~~~~~~~~~dK~~~~~~l~-------~-Gip~p~~~~--------- 129 (305)
T 3df7_A 68 EKSDAFLIIAPEDDFLLYTLTKKAEK-YCENLGSSSRAIAVTSDKWELYKKLR-------G-EVQVPQTSL--------- 129 (305)
T ss_dssp TTCSEEEEECCCGGGHHHHHHHHHHT-TSEESSCCHHHHHHHTSHHHHHHHHT-------T-TSCCCCEES---------
T ss_pred HhcCEEEEEccCCcHHHHHHHHHHHh-cCCccCCCHHHHHHhcCHHHHHHHHH-------h-CCCCCCEec---------
Confidence 47888776643332 23444444544 56889999999999999999999997 5 999999974
Q ss_pred hHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcCCCCeEEEecccCCCeEEEEEEECC-eEEEEEeecCCCcc
Q 047754 132 DMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVLEAPILLQEFVNHGGIIFKVYVAGS-SVKCVKRKSLPDIS 210 (330)
Q Consensus 132 ~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l~~p~vvQefI~h~g~~~Kv~ViG~-~v~~~~R~S~~~~~ 210 (330)
..++||+|+||..++ +|.|+.++.+ .+.++++||||+ |+++.|.++++ .+....+.. .
T Consensus 130 ------~~~~~P~vvKP~~g~---gs~Gv~~v~~------~~~~~lvEe~I~--G~e~sv~v~~g~~~~~~~~~~--~-- 188 (305)
T 3df7_A 130 ------RPLDCKFIIKPRTAC---AGEGIGFSDE------VPDGHIAQEFIE--GINLSVSLAVGEDVKCLSVNE--Q-- 188 (305)
T ss_dssp ------SCCSSSEEEEESSCC-------CBCCSS------CCTTEEEEECCC--SEEEEEEEEESSSEEEEEEEE--E--
T ss_pred ------ccCCCCEEEEeCCCC---CCCCEEEEec------CCCCEEEEeccC--CcEEEEEEEeCCeEEEEEEee--E--
Confidence 247899999999964 4588888887 567999999996 89999999964 333222110 0
Q ss_pred hhhhhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHh-CCc-EEEEEEEEeCCCCCeeEEEEee
Q 047754 211 EEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREAL-GLN-LFNFDLIRDAGERDGYLVIDIN 286 (330)
Q Consensus 211 ~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~L-Gl~-l~GvDvi~~~~~g~~~~ViEVN 286 (330)
+.. .+.+. +...+..++. .++++++|.++.++| |+. ++|+|++++ | .+|++|||
T Consensus 189 ---~~~---~~~~~------------g~~~p~~l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~---~-~~~viEiN 246 (305)
T 3df7_A 189 ---IIN---NFRYA------------GAVVPARISDEVKREVVEEAVRAVECVEGLNGYVGVDIVYS---D-QPYVIEIN 246 (305)
T ss_dssp ---EEE---TTEEE------------EEEESCCCCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEES---S-SEEEEEEE
T ss_pred ---ecc---Cceec------------cccccCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEC---C-CEEEEEEc
Confidence 000 01110 1112222222 468899999999999 965 778999985 3 37999999
Q ss_pred CCCCCC
Q 047754 287 YLPGYA 292 (330)
Q Consensus 287 ~fPg~~ 292 (330)
.-||..
T Consensus 247 pR~~~~ 252 (305)
T 3df7_A 247 ARLTTP 252 (305)
T ss_dssp SSCCGG
T ss_pred CCCCCC
Confidence 999974
No 41
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.67 E-value=5.9e-15 Score=138.75 Aligned_cols=228 Identities=16% Similarity=0.182 Sum_probs=137.0
Q ss_pred chHHHHHHHHCCCeEEEeCCCCCCC--------c---CCC-c---------cEEEEccCChhHHHHHHHHHHhCCCceec
Q 047754 26 QPSLITKATEQGIGLIRIDPDKPLT--------E---QGP-F---------DCIMHKLYGPDWTQQLQQFSSRNPDVRII 84 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~l~--------~---q~~-~---------DvilhK~~~~~~~~~l~~~~~~~p~v~vi 84 (330)
...++++++++|++++.+|++.... + ..+ + |+++.. .+.......+.+ +..|++++
T Consensus 13 ~~~l~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~d~i~~~--~e~~~~~~~~~l-e~~g~~~~ 89 (334)
T 2r85_A 13 ALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPT--GSFVAHLGIELV-ENMKVPYF 89 (334)
T ss_dssp HHHHHHHHHHTTCCEEEESCGGGHHHHHTTSCCCSEEECSSCCHHHHHHTTEEECCC--TTHHHHHCHHHH-HTCCSCBB
T ss_pred HHHHHHHHHhCCCEEEEEECCCCCcccccccccCceEecCCcChHHhcccCCEEEEC--cchhhhhHHHHH-HHcCCCcc
Confidence 4678899999999999999884210 1 112 2 555422 111111111222 34589999
Q ss_pred ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEe
Q 047754 85 DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIF 164 (330)
Q Consensus 85 Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~ 164 (330)
++++++..++||..+.++|++ .|||+|++ +.+. ..++||+|+||..++ +|.|+.++.
T Consensus 90 ~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~--~~~~-----------~~l~~P~vvKP~~g~---~s~Gv~~v~ 146 (334)
T 2r85_A 90 GNKRVLRWESDRNLERKWLKK-------AGIRVPEV--YEDP-----------DDIEKPVIVKPHGAK---GGKGYFLAK 146 (334)
T ss_dssp SCTTHHHHHHSHHHHHHHHHH-------TTCCCCCB--CSCG-----------GGCCSCEEEEECC-------TTCEEES
T ss_pred CCHHHHHHHHhHHHHHHHHHH-------cCCCCCCc--cCCh-----------HHcCCCEEEEeCCCC---CCCCEEEEC
Confidence 999999999999999999986 79999998 3332 235799999999864 468999999
Q ss_pred ChhhhhcC----------C--CCeEEEecccCCCeEEEEEE----ECCeEEEE---EeecCCCcchhhhhc--cCccccc
Q 047754 165 DNEGLEVL----------E--APILLQEFVNHGGIIFKVYV----AGSSVKCV---KRKSLPDISEEKMKS--LKGFLPF 223 (330)
Q Consensus 165 ~~~~L~~l----------~--~p~vvQefI~h~g~~~Kv~V----iG~~v~~~---~R~S~~~~~~~~~~~--~~g~~~f 223 (330)
+.++|... + .++++||||+ |..+-+.+ +++++.+. .|.... .++.-. ....+..
T Consensus 147 ~~~el~~~~~~~~~~~~~~~~~~~lvee~i~--G~e~~~~~~~~~~~~~v~~~~~~g~~~~~---~~~~~~~~~~~~~~~ 221 (334)
T 2r85_A 147 DPEDFWRKAEKFLGIKRKEDLKNIQIQEYVL--GVPVYPHYFYSKVREELELMSIDRRYESN---VDAIGRIPAKDQLEF 221 (334)
T ss_dssp SHHHHHHHHHHHHCCCSGGGCCSEEEEECCC--CEEEEEEEEEETTTTEEEEEEEEEEEEEE---GGGGGGSCHHHHTTS
T ss_pred CHHHHHHHHHHHHhhcccCCCCcEEEEeccC--CceeEEEEeecCcCceeeeeeeccEEEec---cCccccccccccccc
Confidence 99887642 2 6899999995 66664222 22222111 111100 000000 0000000
Q ss_pred CCcccCCCCCccccccccCCCC--chHHHHHHHHHHHHHh-----CC-cEEEEEEEEeCCCCCeeEEEEeeCCCCC
Q 047754 224 SQISSNSVDADEEVDLEKTEMP--REGFVVELSRALREAL-----GL-NLFNFDLIRDAGERDGYLVIDINYLPGY 291 (330)
Q Consensus 224 ~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~lA~~~~~~L-----Gl-~l~GvDvi~~~~~g~~~~ViEVN~fPg~ 291 (330)
+........+.. +..++ ..++++++|.++.++| +. .++++|++++. +|+ +||+|||.-||-
T Consensus 222 ----~~~~~~~~~g~~-p~~l~~~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~-~g~-~~viEiN~R~g~ 290 (334)
T 2r85_A 222 ----DMDITYTVIGNI-PIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTP-DLE-FVVFEISARIVA 290 (334)
T ss_dssp ----CCCCCEEEEEEE-ECCCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECT-TSC-EEEEEEECSCCG
T ss_pred ----ccCCceeeeCCC-CcccCHHHHHHHHHHHHHHHHHHHhhcccccccEEEEEEECC-CCC-EEEEEEeCCcCC
Confidence 000000000110 22222 2577899999999999 44 47789999974 453 799999999986
No 42
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.65 E-value=8.9e-15 Score=144.19 Aligned_cols=225 Identities=16% Similarity=0.194 Sum_probs=148.3
Q ss_pred hHHHHHHHHCCCeEEEeCCCCC-CC------------------------------cCCCccEEEEccC--ChhHHHHHHH
Q 047754 27 PSLITKATEQGIGLIRIDPDKP-LT------------------------------EQGPFDCIMHKLY--GPDWTQQLQQ 73 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~-l~------------------------------~q~~~DvilhK~~--~~~~~~~l~~ 73 (330)
.+++++|+++|++++.++.+.+ .. .+..+|+++.-.. .+. ..+.+
T Consensus 15 ~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~--~~~~~ 92 (451)
T 1ulz_A 15 VRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPLDTYLNKQRIINLALEVGADAIHPGYGFLAEN--AEFAK 92 (451)
T ss_dssp HHHHHHHHHHTCCEEEEECGGGTTCHHHHHSSEEEECCSSTTHHHHCHHHHHHHHHHTTCCEEECCSSTTTTC--HHHHH
T ss_pred HHHHHHHHHcCCeEEEEechhhcccchhhhCcEEEEcCCCcccccCCHHHHHHHHHHcCCCEEEECCCccccC--HHHHH
Confidence 4688899999999999875321 00 0124566654321 111 12233
Q ss_pred HHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE--EecCchhhhhhHHHHHhcCCCcEEEeeCC
Q 047754 74 FSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQA--VVSETELVTRDMAIEELKLRFPLIAKPLE 150 (330)
Q Consensus 74 ~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~l~~~~l~fP~VvKp~~ 150 (330)
.+++ .|++++ .++++++.+.||..+.++|.+ .|||+|++. .+.+.++... .+ ..++||+|+||..
T Consensus 93 ~~~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~~~--~~--~~~g~PvvvKp~~ 160 (451)
T 1ulz_A 93 MCEE-AGITFIGPHWKVIELMGDKARSKEVMKK-------AGVPVVPGSDGVLKSLEEAKA--LA--REIGYPVLLKATA 160 (451)
T ss_dssp HHHH-TTCEESSSCHHHHHHHHSHHHHHHHHHH-------TTCCBCCBCSSSCCCHHHHHH--HH--HHHCSSEEEEECS
T ss_pred HHHH-CCCeEECcCHHHHHHhcCHHHHHHHHHH-------cCCCCCCCcccccCCHHHHHH--HH--HHcCCCEEEEECC
Confidence 3333 478876 679999999999999999986 799999987 6666555432 22 4579999999998
Q ss_pred CCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECC---eEEE-EEeecCCCcchhh
Q 047754 151 ANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGS---SVKC-VKRKSLPDISEEK 213 (330)
Q Consensus 151 a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~---~v~~-~~R~S~~~~~~~~ 213 (330)
++ +|.|+.++.+.++|... +.++++||||+ +++++.|.++++ ++.. ..|.. + +...
T Consensus 161 g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~-~~~~- 233 (451)
T 1ulz_A 161 GG---GGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIE-NPKHIEYQVLGDKHGNVIHLGERDC-S-IQRR- 233 (451)
T ss_dssp SS---SCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCC-SCEEEEEEEEECTTSCEEEEEEEEE-E-EEET-
T ss_pred CC---CCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccc-CCeEEEEEEEEcCCCCEEEEeeeec-c-cccc-
Confidence 54 46899999999887641 46899999996 347899988864 3432 22211 0 0000
Q ss_pred hhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 214 MKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 214 ~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
.. ... ...|.. .++. .+++.++|.++.++||+. ++++|++++. +|+ +||+|||.-|+
T Consensus 234 ~~------------~~~-----~~~P~~-~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~g~-~~viEiN~R~~ 293 (451)
T 1ulz_A 234 NQ------------KLV-----EIAPSL-ILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQ-EGN-LYFIEMNTRIQ 293 (451)
T ss_dssp TE------------EEE-----EEESCS-SCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCC-EEEEEEECSCC
T ss_pred cc------------cce-----eECCcc-cCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CCC-EEEEEeeCCCC
Confidence 00 000 001111 1221 457889999999999998 4569999985 454 79999999887
Q ss_pred CC
Q 047754 291 YA 292 (330)
Q Consensus 291 ~~ 292 (330)
-.
T Consensus 294 ~~ 295 (451)
T 1ulz_A 294 VE 295 (451)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 43
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.65 E-value=1.1e-14 Score=143.64 Aligned_cols=225 Identities=12% Similarity=0.185 Sum_probs=148.2
Q ss_pred hHHHHHHHHCCCeEEEeCCCCC--CC------------------c------------CCCccEEEEccCC-hhHHHHHHH
Q 047754 27 PSLITKATEQGIGLIRIDPDKP--LT------------------E------------QGPFDCIMHKLYG-PDWTQQLQQ 73 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~--l~------------------~------------q~~~DvilhK~~~-~~~~~~l~~ 73 (330)
.+++++|+++|++++.++.+.+ .. . +..+|+|+.-... ... ..+.+
T Consensus 14 ~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~-~~~~~ 92 (451)
T 2vpq_A 14 VRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVHPGYGFLAEN-ADFAE 92 (451)
T ss_dssp HHHHHHHHHTTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTC-HHHHH
T ss_pred HHHHHHHHHcCCEEEEEecccccccchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEECCCccccC-HHHHH
Confidence 4688999999999999864311 00 0 1235665544211 011 12344
Q ss_pred HHHhCCCceecC-hHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE--EecCchhhhhhHHHHHhcCCCcEEEeeCC
Q 047754 74 FSSRNPDVRIID-PPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQA--VVSETELVTRDMAIEELKLRFPLIAKPLE 150 (330)
Q Consensus 74 ~~~~~p~v~viD-p~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~l~~~~l~fP~VvKp~~ 150 (330)
.+++ .|++++. ++++++.+.||..+.++|.+ .|||+|++. .+.+.++... .+ ..++||+|+||..
T Consensus 93 ~~~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~~~--~~--~~~g~PvvvKp~~ 160 (451)
T 2vpq_A 93 LCEA-CQLKFIGPSYQSIQKMGIKDVAKAEMIK-------ANVPVVPGSDGLMKDVSEAKK--IA--KKIGYPVIIKATA 160 (451)
T ss_dssp HHHT-TTCEESSSCHHHHHHHHSHHHHHHHHHH-------TTCCBCSBCSSCBSCHHHHHH--HH--HHHCSSEEEEETT
T ss_pred HHHH-cCCeEECCCHHHHHHhcCHHHHHHHHHH-------cCCCcCCCcccCcCCHHHHHH--HH--HhcCCcEEEEECC
Confidence 4433 5888776 58999999999999999986 799999876 6666555432 22 4578999999998
Q ss_pred CCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECC---eEEEEE-ee-cCCCcchh
Q 047754 151 ANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGS---SVKCVK-RK-SLPDISEE 212 (330)
Q Consensus 151 a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~---~v~~~~-R~-S~~~~~~~ 212 (330)
++ +|.|+.++.+.++|... +.++++||||+ +++++.|.++++ ++.... |. +..
T Consensus 161 g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~~~~----- 231 (451)
T 2vpq_A 161 GG---GGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIE-NFRHIEIQIVGDSYGNVIHLGERDCTIQ----- 231 (451)
T ss_dssp CC---TTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCC-SEEEEEEEEEECTTSCEEEEEEEEEEEE-----
T ss_pred CC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecC-CCeEEEEEEEEcCCCCEEEEeccccchh-----
Confidence 54 46899999999887642 46899999996 237898888764 344322 21 100
Q ss_pred hhhccCcccccCCcccCCCCCccccccccCC-CCc--hHHHHHHHHHHHHHhCCcE-EEEEEEEeCCCCCeeEEEEeeCC
Q 047754 213 KMKSLKGFLPFSQISSNSVDADEEVDLEKTE-MPR--EGFVVELSRALREALGLNL-FNFDLIRDAGERDGYLVIDINYL 288 (330)
Q Consensus 213 ~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~-~~~--~~~~~~lA~~~~~~LGl~l-~GvDvi~~~~~g~~~~ViEVN~f 288 (330)
. .+. +. ....+.. ++. .+++.++|.++.++||+.- +++|++++..+| .+||+|||.-
T Consensus 232 --~------~~~---~~-------~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g-~~~viEiN~R 292 (451)
T 2vpq_A 232 --R------RMQ---KL-------VEEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDN-KFYFMEMNTR 292 (451)
T ss_dssp --E------TTE---EE-------EEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEECS
T ss_pred --c------ccc---ce-------EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-CEEEEEeeCC
Confidence 0 000 00 0001111 222 4578899999999999984 459999983245 4799999998
Q ss_pred CCCC
Q 047754 289 PGYA 292 (330)
Q Consensus 289 Pg~~ 292 (330)
|+-.
T Consensus 293 ~~~~ 296 (451)
T 2vpq_A 293 IQVE 296 (451)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 8744
No 44
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.65 E-value=1.4e-14 Score=143.27 Aligned_cols=222 Identities=12% Similarity=0.156 Sum_probs=148.7
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCC---------------------c------------CCCccEEEEccC--ChhHHHHH
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLT---------------------E------------QGPFDCIMHKLY--GPDWTQQL 71 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~---------------------~------------q~~~DvilhK~~--~~~~~~~l 71 (330)
.+++++|+++|++++.+|.+.+.. . +..+|+|+.-.. .+. ..+
T Consensus 19 ~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l~~~~~~~~id~v~~~~g~~~E~--~~~ 96 (461)
T 2dzd_A 19 IRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPGYGFLSEN--IQF 96 (461)
T ss_dssp HHHHHHHHHHTCEEEEEECGGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHHHHHHHHTTCCEEECCSSSSTTC--HHH
T ss_pred HHHHHHHHHcCCEEEEEECCcccccchhhhCCEEEEcCCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccC--HHH
Confidence 568899999999999998753110 0 023555554321 111 123
Q ss_pred HHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE--EecCchhhhhhHHHHHhcCCCcEEEee
Q 047754 72 QQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQA--VVSETELVTRDMAIEELKLRFPLIAKP 148 (330)
Q Consensus 72 ~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~l~~~~l~fP~VvKp 148 (330)
.+.+++ -|++++ .++++++.+.||..+.+++.+ .|||+|++. .+.+.++... .+ ..++||+|+||
T Consensus 97 ~~~~~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~~~--~~--~~~g~PvvvKp 164 (461)
T 2dzd_A 97 AKRCRE-EGIIFIGPNENHLDMFGDKVKARHAAVN-------AGIPVIPGSDGPVDGLEDVVA--FA--EAHGYPIIIKA 164 (461)
T ss_dssp HHHHHH-TTCEESSCCHHHHHHTTSHHHHHHHHHH-------TTCCBCCBCSSCCSSHHHHHH--HH--HHHCSCEEEEE
T ss_pred HHHHHH-cCCEEECCCHHHHHHhhCHHHHHHHHHH-------cCCCCCCCcccCcCCHHHHHH--HH--HhcCCcEEEEe
Confidence 344434 378765 779999999999999999986 799999997 5666555432 22 45899999999
Q ss_pred CCCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECC---eEEE-EEeecCCCcch
Q 047754 149 LEANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGS---SVKC-VKRKSLPDISE 211 (330)
Q Consensus 149 ~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~---~v~~-~~R~S~~~~~~ 211 (330)
..+. +|.||.++.+.++|... +.++++||||+ +++.+.|.++++ +++. ..|.. +...
T Consensus 165 ~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~~~~- 238 (461)
T 2dzd_A 165 ALGG---GGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIE-NPKHIEVQILGDYEGNIVHLYERDC-SVQR- 238 (461)
T ss_dssp STTC---SSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCC-SCEEEEEEEEECTTCCEEEEEEEEE-EEEE-
T ss_pred CCCC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCC-CCeEEEEEEEEcCCCCEEEEEeccc-cccc-
Confidence 9864 46899999999888642 46899999996 347898888864 3443 22211 0000
Q ss_pred hhhhccCcccccCCcccCCCCCccccccccC-CCCc--hHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEeeC
Q 047754 212 EKMKSLKGFLPFSQISSNSVDADEEVDLEKT-EMPR--EGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDINY 287 (330)
Q Consensus 212 ~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~-~~~~--~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEVN~ 287 (330)
. +. +. ....+. .++. .+++.++|.++.++||+..++ +|++++. + .+||+|||.
T Consensus 239 ----~-------~~--~~-------~~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~--~-~~~viEiN~ 295 (461)
T 2dzd_A 239 ----R-------HQ--KV-------VEVAPSVSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSG--D-EFYFIEVNP 295 (461)
T ss_dssp ----T-------TE--EE-------EEEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEET--T-EEEEEEEES
T ss_pred ----c-------cc--ce-------EEECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC--C-CEEEEEEEC
Confidence 0 00 00 000111 1221 467889999999999999765 9999985 3 489999999
Q ss_pred CCCC
Q 047754 288 LPGY 291 (330)
Q Consensus 288 fPg~ 291 (330)
-||.
T Consensus 296 R~~~ 299 (461)
T 2dzd_A 296 RIQV 299 (461)
T ss_dssp SCCG
T ss_pred CCCC
Confidence 8874
No 45
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.64 E-value=1.4e-14 Score=157.46 Aligned_cols=228 Identities=13% Similarity=0.203 Sum_probs=155.8
Q ss_pred chHHHHHHHHCCCeEEEeCCCCCCC-------c-----------------CCCccEEEEccCChhHH---HHHHH--HHH
Q 047754 26 QPSLITKATEQGIGLIRIDPDKPLT-------E-----------------QGPFDCIMHKLYGPDWT---QQLQQ--FSS 76 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~l~-------~-----------------q~~~DvilhK~~~~~~~---~~l~~--~~~ 76 (330)
-.++++++++.|++++.+|.+.... + +..+|+|+.-...+... ..+.+ .++
T Consensus 30 g~~~~~al~~~G~~vv~v~~~~~~~~~~~~~ad~~~i~p~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le 109 (1073)
T 1a9x_A 30 GAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLE 109 (1073)
T ss_dssp HHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEECCCCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHH
Confidence 3468899999999999999874321 0 12457777655432211 11222 333
Q ss_pred hCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCC
Q 047754 77 RNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSD 155 (330)
Q Consensus 77 ~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~ 155 (330)
+ -|+.++ .+++++..+.||..+.++|.+ .|||+|++..+.+.++... .. ..++||+|+||..+.|
T Consensus 110 ~-~gv~~~G~~~~ai~~~~DK~~~k~~l~~-------~Gipvp~~~~v~~~~ea~~--~~--~~ig~PvVvKp~~~~G-- 175 (1073)
T 1a9x_A 110 E-FGVTMIGATADAIDKAEDRRRFDVAMKK-------IGLETARSGIAHTMEEALA--VA--ADVGFPCIIRPSFTMG-- 175 (1073)
T ss_dssp H-HTCEECSSCHHHHHHHHSHHHHHHHHHH-------TTCCCCSEEEESSHHHHHH--HH--HHHCSSEEEEETTCCT--
T ss_pred H-cCCeeeCCCHHHHHHhhCHHHHHHHHHH-------CCcCCCCEEEECCHHHHHH--HH--HHcCCCEEEEECCCCC--
Confidence 3 378888 899999999999999999987 7999999999988765442 22 5689999999998644
Q ss_pred CCcceEEEeChhhhhcC---------CCCeEEEecccCCCeEEEEEEECCe---EEE--EEeecCCCcchhhhhccCccc
Q 047754 156 KSHQMYLIFDNEGLEVL---------EAPILLQEFVNHGGIIFKVYVAGSS---VKC--VKRKSLPDISEEKMKSLKGFL 221 (330)
Q Consensus 156 ~sh~m~iv~~~~~L~~l---------~~p~vvQefI~h~g~~~Kv~ViG~~---v~~--~~R~S~~~~~~~~~~~~~g~~ 221 (330)
|.|+.++.++++|.+. ..++++||||+ +.+.+.|-|++|. ++. ...+--|.
T Consensus 176 -g~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~-G~~E~~v~v~~d~~g~~v~~~~~e~~dp~------------- 240 (1073)
T 1a9x_A 176 -GSGGGIAYNREEFEEICARGLDLSPTKELLIDESLI-GWKEYEMEVVRDKNDNCIIVCSIENFDAM------------- 240 (1073)
T ss_dssp -TTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCT-TSEEEEEEEEECTTCCEEEEEEEEESSCT-------------
T ss_pred -CCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccC-CCeEEEEEEEEeCCCCEEEEEEEecccCC-------------
Confidence 5799999999888753 34899999996 3379999999863 332 11111110
Q ss_pred ccCCcccCCCCCccccccccC-CCCc--hHHHHHHHHHHHHHhCCc--EEEEEEEEeCCCCCeeEEEEeeCCCCCCC
Q 047754 222 PFSQISSNSVDADEEVDLEKT-EMPR--EGFVVELSRALREALGLN--LFNFDLIRDAGERDGYLVIDINYLPGYAK 293 (330)
Q Consensus 222 ~f~~~s~~~~~~~~~~~~~~~-~~~~--~~~~~~lA~~~~~~LGl~--l~GvDvi~~~~~g~~~~ViEVN~fPg~~g 293 (330)
.++.+.. ....+. .+++ .+.++++|.++.++||+. .+++|++++..+|+ ++||||| |.+.+
T Consensus 241 ------~v~~g~s--~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vdf~~~~~~g~-~~viEiN--pR~~~ 306 (1073)
T 1a9x_A 241 ------GIHTGDS--ITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGR-LIVIEMN--PRVSR 306 (1073)
T ss_dssp ------TSCGGGS--CEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTCC-EEEEEEE--SSCCH
T ss_pred ------ccccCcE--EEEecCCCCCHHHHHHHHHHHHHHHHHcCcccCceEEEEEEECCCCC-EEEEEec--CCCCc
Confidence 0010100 001121 1222 457889999999999997 88899999864554 8999999 44444
No 46
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.64 E-value=4.4e-15 Score=139.96 Aligned_cols=178 Identities=20% Similarity=0.236 Sum_probs=107.6
Q ss_pred HHHHHHHHhCCCce-ecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEe
Q 047754 69 QQLQQFSSRNPDVR-IIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAK 147 (330)
Q Consensus 69 ~~l~~~~~~~p~v~-viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvK 147 (330)
+.+.+.+.+ .|++ +.++++++..++||+.+.++|++ .|||+|++... .++... .+....++||+|+|
T Consensus 88 a~~~~~l~~-~g~~~~~~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~--~~~~~~--~~~~~~~~~P~vvK 155 (331)
T 2pn1_A 88 AQATERFQA-IGVTVIVSPYAACELCFDKYTMYEYCLR-------QGIAHARTYAT--MASFEE--ALAAGEVQLPVFVK 155 (331)
T ss_dssp HHTHHHHHT-TTCEECCCCHHHHHHHHBHHHHHHHHHH-------HTCCCCCEESS--HHHHHH--HHHTTSSCSCEEEE
T ss_pred HHHHHHHHh-CCcEEecCCHHHHHHhhCHHHHHHHHHH-------cCCCCCcEEec--HHHhhh--hhhcccCCCCEEEE
Confidence 334444443 4775 46889999999999999999986 69999998752 222211 22124789999999
Q ss_pred eCCCCCCCCCcceEEEeChhhhhcC---CCCeEEEecccCCCeEEEEEEEC----CeEE-EEEeecCCCcchhhhhccCc
Q 047754 148 PLEANGSDKSHQMYLIFDNEGLEVL---EAPILLQEFVNHGGIIFKVYVAG----SSVK-CVKRKSLPDISEEKMKSLKG 219 (330)
Q Consensus 148 p~~a~Gs~~sh~m~iv~~~~~L~~l---~~p~vvQefI~h~g~~~Kv~ViG----~~v~-~~~R~S~~~~~~~~~~~~~g 219 (330)
|..++ +|.|+.++.+.++|... ..++++||||+ |+.+.|.+++ +++. +..+.... ... |
T Consensus 156 p~~g~---g~~gv~~v~~~~el~~~~~~~~~~lvee~i~--G~e~~v~~~~d~~~G~~~~~~~~~~~~-~~~-------g 222 (331)
T 2pn1_A 156 PRNGS---ASIEVRRVETVEEVEQLFSKNTDLIVQELLV--GQELGVDAYVDLISGKVTSIFIKEKLT-MRA-------G 222 (331)
T ss_dssp ESBC--------------------------CEEEEECCC--SEEEEEEEEECTTTCCEEEEEEEEEEE-EET-------T
T ss_pred eCCCC---CCCCeEEeCCHHHHHHHHHhCCCeEEEecCC--CcEEEEEEEEecCCCeEEEEEEEEEEE-ecC-------C
Confidence 99864 46899999999988764 46899999995 7999988876 4444 33332210 000 0
Q ss_pred ccccCCcccCCCCCccccccccCCCCchHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeeEEEEeeC-CCCCC
Q 047754 220 FLPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRALREALGL-NLFNFDLIRDAGERDGYLVIDINY-LPGYA 292 (330)
Q Consensus 220 ~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~LGl-~l~GvDvi~~~~~g~~~~ViEVN~-fPg~~ 292 (330)
.. ..... +..+.+.++|.++.++||+ .++++|++.+ +| .++++|||. +||..
T Consensus 223 ~~----------------~~~~~--~~~~~~~~~~~~~~~~lg~~G~~~vd~~~~--~g-~~~~iEiN~R~~g~~ 276 (331)
T 2pn1_A 223 ET----------------DKSRS--VLRDDVFELVEHVLDGSGLVGPLDFDLFDV--AG-TLYLSEINPRFGGGY 276 (331)
T ss_dssp EE----------------EEEEE--ECCHHHHHHHHHHHTTTCCCEEEEEEEEEE--TT-EEEEEEEESSCCTTH
T ss_pred ce----------------eEeEE--eccHHHHHHHHHHHHHhCCcceEEEEEEEc--CC-CEEEEEEeCCCCCch
Confidence 00 00000 1246688999999999999 4778999954 34 489999999 67654
No 47
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.64 E-value=1.4e-14 Score=143.20 Aligned_cols=206 Identities=12% Similarity=0.142 Sum_probs=136.0
Q ss_pred HHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeC
Q 047754 71 LQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPL 149 (330)
Q Consensus 71 l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~ 149 (330)
+.+.+.+ .|++++ .++++++.+.||..+.++|++ .+||+|++..+.+.++... .+ ..++||+|+||.
T Consensus 99 ~~~~l~~-~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~-------~GIp~p~~~~~~~~~ea~~--~~--~~~g~PvVvKp~ 166 (442)
T 3lp8_A 99 LSDALTE-EGILVFGPSKAAARLESSKGFTKELCMR-------YGIPTAKYGYFVDTNSAYK--FI--DKHKLPLVVKAD 166 (442)
T ss_dssp HHHHHHH-TTCEEESCCHHHHHHHHCHHHHHHHHHH-------HTCCBCCEEEESSHHHHHH--HH--HHSCSSEEEEES
T ss_pred HHHHHHh-cCCcEecCCHHHHHHhhCHHHHHHHHHH-------CCCCCCCEEEECCHHHHHH--HH--HHcCCcEEEeEC
Confidence 4444444 389888 899999999999999999986 7999999999988766542 23 568999999998
Q ss_pred CCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEEC--CeEEEE--EeecCCCcchh
Q 047754 150 EANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAG--SSVKCV--KRKSLPDISEE 212 (330)
Q Consensus 150 ~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG--~~v~~~--~R~S~~~~~~~ 212 (330)
.+. +|.|+.++.+.+++.+. ..++++||||+ |.++.|.++. ++++.. .+.- ...
T Consensus 167 ~~~---gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~~~~~-~~~--- 237 (442)
T 3lp8_A 167 GLA---QGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE--GKEISFFTLVDGSNPVILGVAQDY-KTI--- 237 (442)
T ss_dssp SCC---TTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEESSCEEEEEEEEEC-CEE---
T ss_pred CCC---CCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec--CcEEEEEEEECCCeEEEeEEeEee-eec---
Confidence 743 56899999999887541 25899999996 8999888884 344321 1211 100
Q ss_pred hhhccCcccccCCcccCCCCCccccccccCC-CCc--hHHHHHH----HHHHHHHhCCcE---EEEEEEEeCCCCCeeEE
Q 047754 213 KMKSLKGFLPFSQISSNSVDADEEVDLEKTE-MPR--EGFVVEL----SRALREALGLNL---FNFDLIRDAGERDGYLV 282 (330)
Q Consensus 213 ~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~-~~~--~~~~~~l----A~~~~~~LGl~l---~GvDvi~~~~~g~~~~V 282 (330)
+.++. +...+.. +...+.. +++ .+.+.+. +.++.+++|+.+ +++|++++. +| ++|
T Consensus 238 --------~~~~~--g~~~gg~--g~~~P~~~l~~~~~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~~-~g--~~v 302 (442)
T 3lp8_A 238 --------GDNNK--GPNTGGM--GSYSKPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKK-NE--PKL 302 (442)
T ss_dssp --------EGGGE--EEECSCS--EEEECTTSSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEE
T ss_pred --------ccCCC--CCCCCCc--EEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--eEE
Confidence 11110 1111110 1112222 222 2344444 677778999954 449999985 33 799
Q ss_pred EEeeCCCCCCCC----CCcHHHHHHHHHHHHHhc
Q 047754 283 IDINYLPGYAKL----PGYETLLMDFFLNVAKSK 312 (330)
Q Consensus 283 iEVN~fPg~~g~----~~~~~~l~~~i~~~~~~~ 312 (330)
||+|.-||-... +.....|.+.++..+..+
T Consensus 303 iEiN~R~g~~~~~~~~~~~~~dl~~~~~~~~~G~ 336 (442)
T 3lp8_A 303 LEYNVRFGDPETQSILPRLNSDFLKLLSLTAKGK 336 (442)
T ss_dssp EEEESSCCTTHHHHHGGGBCSCHHHHHHHHHHTC
T ss_pred EEEecCCCCCchhhhHHHhCCCHHHHHHHHHcCC
Confidence 999999994332 223345667777666543
No 48
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.63 E-value=1.4e-14 Score=142.80 Aligned_cols=224 Identities=10% Similarity=0.144 Sum_probs=147.4
Q ss_pred hHHHHHHHHCCCeEEEeCCCCC-CC-------------------c------------CCCccEEEEccC--ChhHHHHHH
Q 047754 27 PSLITKATEQGIGLIRIDPDKP-LT-------------------E------------QGPFDCIMHKLY--GPDWTQQLQ 72 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~-l~-------------------~------------q~~~DvilhK~~--~~~~~~~l~ 72 (330)
.+++++|+++|++++.++.+.+ .. . +..+|+++.-.. .+. ..+.
T Consensus 15 ~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~--~~~~ 92 (449)
T 2w70_A 15 LRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSEN--ANFA 92 (449)
T ss_dssp HHHHHHHHHHTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHHTCCEEECCSSTTTTC--HHHH
T ss_pred HHHHHHHHHcCCeEEEEeccccccCchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEECCCCcccC--HHHH
Confidence 4688899999999998864311 00 0 013555554321 111 1233
Q ss_pred HHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE--EecCchhh-hhhHHHHHhcCCCcEEEee
Q 047754 73 QFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQA--VVSETELV-TRDMAIEELKLRFPLIAKP 148 (330)
Q Consensus 73 ~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~-~~~~~l~~~~l~fP~VvKp 148 (330)
+.+++ -|++++ .++++++.+.||..+.++|.+ .|||+|++. .+.+.++. .. .+ ..++||+|+||
T Consensus 93 ~~~e~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~~~~--~~--~~~g~PvvvKp 160 (449)
T 2w70_A 93 EQVER-SGFIFIGPKAETIRLMGDKVSAIAAMKK-------AGVPCVPGSDGPLGDDMDKNRA--IA--KRIGYPVIIKA 160 (449)
T ss_dssp HHHHH-TTCEESSSCHHHHHHHHSHHHHHHHHHH-------HTCCBCSBCSSCCCSCHHHHHH--HH--HHHCSSEEEEE
T ss_pred HHHHH-cCCceECCCHHHHHHhcCHHHHHHHHHH-------cCCCcCCCcccccCCHHHHHHH--HH--HHhCCcEEEEE
Confidence 44433 378866 579999999999999999987 699999987 67776554 32 23 45789999999
Q ss_pred CCCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECC---eEEE-EEeecCCCcch
Q 047754 149 LEANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGS---SVKC-VKRKSLPDISE 211 (330)
Q Consensus 149 ~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~---~v~~-~~R~S~~~~~~ 211 (330)
..++ +|.|+.++.+.++|... +.++++||||+ +++++.|.++++ ++.. ..|.. . ..
T Consensus 161 ~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~~~~~~~G~~~~~~~~~~-~-~~- 233 (449)
T 2w70_A 161 SGGG---GGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLE-NPRHVEIQVLADGQGNAIYLAERDC-S-MQ- 233 (449)
T ss_dssp TTCC---TTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCS-SCEEEEEEEEECTTSCEEEEEEEEE-E-EE-
T ss_pred CCCC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccC-CCeEEEEEEEEcCCCCEEEEeceec-c-cc-
Confidence 9864 46899999999887642 46899999996 348899888863 3443 22210 0 00
Q ss_pred hhhhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCC
Q 047754 212 EKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYL 288 (330)
Q Consensus 212 ~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~f 288 (330)
. .+. +.. ...|.. .++. .+++.++|.++.++||+. ++++|++++. + .++|+|||.-
T Consensus 234 ---~------~~~---~~~-----~~~p~~-~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~--~-~~~viEiN~R 292 (449)
T 2w70_A 234 ---R------RHQ---KVV-----EEAPAP-GITPELRRYIGERCAKACVDIGYRGAGTFEFLFEN--G-EFYFIEMNTR 292 (449)
T ss_dssp ---E------TTE---EEE-----EEESCT-TCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEECS
T ss_pred ---c------CCc---cee-----eeCCcc-cCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC--C-CEEEEEEECC
Confidence 0 000 000 001111 1222 457889999999999997 5679999985 3 4899999998
Q ss_pred CCCC
Q 047754 289 PGYA 292 (330)
Q Consensus 289 Pg~~ 292 (330)
|+-.
T Consensus 293 ~~~~ 296 (449)
T 2w70_A 293 IQVE 296 (449)
T ss_dssp CCTT
T ss_pred CCcc
Confidence 8643
No 49
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.63 E-value=2.8e-14 Score=142.43 Aligned_cols=193 Identities=21% Similarity=0.219 Sum_probs=131.1
Q ss_pred ccEEEEccCChhHHHHHHHHHHhCCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHH
Q 047754 55 FDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMA 134 (330)
Q Consensus 55 ~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~ 134 (330)
+|+|+. +. +.....+.+..++ -|++ -.+++++..+.||..+.++|.+ .|||+|++..+.+.++... .
T Consensus 103 id~Vip-~s-E~~l~~~a~~~e~-~Gi~-g~~~~ai~~~~DK~~~k~~l~~-------~GIpvp~~~~v~s~ee~~~--~ 169 (474)
T 3vmm_A 103 ADAITT-NN-ELFIAPMAKACER-LGLR-GAGVQAAENARDKNKMRDAFNK-------AGVKSIKNKRVTTLEDFRA--A 169 (474)
T ss_dssp CSEEEE-SC-GGGHHHHHHHHHH-TTCC-CSCHHHHHHTTCHHHHHHHHHH-------TTSCCCCEEEECSHHHHHH--H
T ss_pred CCEEEE-CC-cccHHHHHHHHHH-cCCC-CCCHHHHHHhhCHHHHHHHHHH-------cCCCCCCeEEECCHHHHHH--H
Confidence 345544 22 2223334444444 3677 8899999999999999999986 7999999999988766542 2
Q ss_pred HHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC-------------------CCCeEEEecccCCC---------
Q 047754 135 IEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL-------------------EAPILLQEFVNHGG--------- 186 (330)
Q Consensus 135 l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------------------~~p~vvQefI~h~g--------- 186 (330)
. ..++||+|+||..+. +|.||.++.++++|.+. ..++++||||+...
T Consensus 170 ~--~~lg~PvVVKP~~g~---gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~ 244 (474)
T 3vmm_A 170 L--EEIGTPLILKPTYLA---SSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGY 244 (474)
T ss_dssp H--HHSCSSEEEEESSCC---TTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCHHHHCSSSSS
T ss_pred H--HHcCCCEEEEECCCC---cCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCceeeeeecccc
Confidence 2 578999999999864 46899999999887531 46899999997321
Q ss_pred ---eEEEEEEECCeEEEEE--eecCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHH
Q 047754 187 ---IIFKVYVAGSSVKCVK--RKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALRE 259 (330)
Q Consensus 187 ---~~~Kv~ViG~~v~~~~--R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~ 259 (330)
..+.+++.++++.++. ++. +.. .|.. . ....+..++. .+.+.++|.++.+
T Consensus 245 ~~e~sv~~v~~dg~~~~v~i~~~~-~~~------------~~~~--~--------~~~~Pa~l~~~~~~~l~~~a~~~~~ 301 (474)
T 3vmm_A 245 SDYISIEGIMADGEYFPIAIHDKT-PQI------------GFTE--T--------SHITPSILDEEAKKKIVEAAKKANE 301 (474)
T ss_dssp CSEEEEEEEEETTEEEEEEEEEEC-CCB------------TTBC--C--------EEEESCCCCHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEEEECCeEEEEEEEeec-cCC------------Cccc--e--------EEEECCCCCHHHHHHHHHHHHHHHH
Confidence 2244577777765332 221 110 0100 0 0011222222 4578899999999
Q ss_pred HhCCcEEE--EEEEEeCCCCCeeEEEEeeCCCC
Q 047754 260 ALGLNLFN--FDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 260 ~LGl~l~G--vDvi~~~~~g~~~~ViEVN~fPg 290 (330)
++|+.-.+ +|++++. +| .+++||||.=||
T Consensus 302 alG~~g~~~~vef~~~~-dg-~~~~iEvNpR~~ 332 (474)
T 3vmm_A 302 GLGLQNCATHTEIKLMK-NR-EPGLIESAARFA 332 (474)
T ss_dssp HHTCCSEEEEEEEEEEG-GG-EEEEEEEESSCC
T ss_pred HcCCCCccEEEEEEEcC-CC-CEEEEEEeCCCC
Confidence 99999766 9999985 45 489999996655
No 50
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.62 E-value=1.1e-14 Score=142.12 Aligned_cols=179 Identities=13% Similarity=0.088 Sum_probs=120.8
Q ss_pred Cceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCc
Q 047754 80 DVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSH 158 (330)
Q Consensus 80 ~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh 158 (330)
|++++ +++++++.+.||..+.++|.+ .|||+|++..+.+.++... .+ ..++||+|+||..+. +|.
T Consensus 85 gi~~~g~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~~~~~~--~~--~~~~~P~vvKp~~~~---gg~ 150 (417)
T 2ip4_A 85 GLLLFGPTQKAAMIEGSKAFAKGLMER-------YGIPTARYRVFREPLEALA--YL--EEVGVPVVVKDSGLA---AGK 150 (417)
T ss_dssp TCCEESCCHHHHHHHHCHHHHHHHHHH-------TCCCBCCEEEESSHHHHHH--HH--HHHCSSEEEECTTSC---SST
T ss_pred CCCEECccHHHHHHHcCHHHHHHHHHH-------cCCCCCCeeeeCCHHHHHH--HH--HHcCCCEEEEECCCC---CCC
Confidence 78887 899999999999999999986 7999999999988765542 22 457899999998854 568
Q ss_pred ceEEEeChhhhhcC---------CCCeEEEecccCCCeEEEEEEECC--eEEEEE--eecCCCcchhhhhccCcccccCC
Q 047754 159 QMYLIFDNEGLEVL---------EAPILLQEFVNHGGIIFKVYVAGS--SVKCVK--RKSLPDISEEKMKSLKGFLPFSQ 225 (330)
Q Consensus 159 ~m~iv~~~~~L~~l---------~~p~vvQefI~h~g~~~Kv~ViG~--~v~~~~--R~S~~~~~~~~~~~~~g~~~f~~ 225 (330)
|+.++.+.++|... ..++++||||+ |.++.|.++++ .++... |..-+. +.++.
T Consensus 151 Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~~~~~~~~~~~~------------~~~~~ 216 (417)
T 2ip4_A 151 GVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE--GEEATVLALTDGETILPLLPSQDHKRL------------LDGDQ 216 (417)
T ss_dssp TCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC--SCEEEEEEEESSSCEEECCCBEECCEE------------ETTTE
T ss_pred CEEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc--CcEEEEEEEEeCCEEEEcchheechhh------------ccCCC
Confidence 99999999888642 26899999996 88999998843 333211 211000 00000
Q ss_pred cccCCCCCccccccccCCCCc--hHHH-HHHHHHHHHHh---CCc---EEEEEEEEeCCCCCeeEEEEeeCCCCCCC
Q 047754 226 ISSNSVDADEEVDLEKTEMPR--EGFV-VELSRALREAL---GLN---LFNFDLIRDAGERDGYLVIDINYLPGYAK 293 (330)
Q Consensus 226 ~s~~~~~~~~~~~~~~~~~~~--~~~~-~~lA~~~~~~L---Gl~---l~GvDvi~~~~~g~~~~ViEVN~fPg~~g 293 (330)
+...+.. +...+..+++ .+.+ ++++.++.++| |+. ++++|++++. +| ++|+|||.-||-.+
T Consensus 217 --~~~~g~~--~~~~p~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~~ 286 (417)
T 2ip4_A 217 --GPMTGGM--GAVAPYPMDEATLRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTR-EG--PKVLEFNARFGDPE 286 (417)
T ss_dssp --EEECSCS--EEEESCCCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECS-SC--EEEEEEESSCCTTH
T ss_pred --CCcCCCC--eeeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeC-CC--eEEEEEecCCCCcH
Confidence 1111100 1112222322 2233 55677777776 444 5679999985 44 78999999998443
No 51
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.62 E-value=1.8e-14 Score=156.52 Aligned_cols=222 Identities=16% Similarity=0.247 Sum_probs=142.9
Q ss_pred HHHHHHHHCCCeEEEeCCCCCCCc--C----------------------CCccEEEEccCChhHHHHHHHHHHhCCCcee
Q 047754 28 SLITKATEQGIGLIRIDPDKPLTE--Q----------------------GPFDCIMHKLYGPDWTQQLQQFSSRNPDVRI 83 (330)
Q Consensus 28 ~l~~~~~~~Gi~~~~id~~~~l~~--q----------------------~~~DvilhK~~~~~~~~~l~~~~~~~p~v~v 83 (330)
.+.++++++|++++.+|.+..... . ...|.++.-...+.. ..+.+.+.+ .|+++
T Consensus 584 ~~~~al~~~G~~vi~v~~np~~~s~~~~~ad~~~~~p~~~e~v~~i~~~e~~d~Vi~~~g~~~~-~~la~~Le~-~Gi~i 661 (1073)
T 1a9x_A 584 HASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP-LKLARALEA-AGVPV 661 (1073)
T ss_dssp HHHHHHHHTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHHHHHHHHCCSEEECSSSTHHH-HTTHHHHHH-TTCCB
T ss_pred HHHHHHHhcCCEEEEEecCCcccccccccccEEEeccchhhhhhhhhhhcCcceEEeecCCchH-HHHHHHHHH-CCCCe
Confidence 468889999999999998732210 0 123444433322221 233344444 37888
Q ss_pred c-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEE
Q 047754 84 I-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYL 162 (330)
Q Consensus 84 i-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~i 162 (330)
+ .++++++.+.||..+.++|.+ .|||+|++..+.+.++... .. ..++||+|+||..+. +|++|.+
T Consensus 662 ~G~~~~ai~~~~DK~~~~~ll~~-------~GIp~P~~~~~~s~eea~~--~~--~~ig~PvvVKP~~~~---gG~Gv~i 727 (1073)
T 1a9x_A 662 IGTSPDAIDRAEDRERFQHAVER-------LKLKQPANATVTAIEMAVE--KA--KEIGYPLVVRASYVL---GGRAMEI 727 (1073)
T ss_dssp CSSCHHHHHHHHSHHHHHHHHHH-------HTCCCCCEEECCSHHHHHH--HH--HHHCSSEEEEC----------CEEE
T ss_pred eCCCHHHHHHhhCHHHHHHHHHH-------cCcCCCCceEECCHHHHHH--HH--HHcCCCEEEEECCCC---CCCCeEE
Confidence 7 889999999999999999987 6999999999988766542 22 568999999999854 4689999
Q ss_pred EeChhhhhcC---------CCCeEEEecccCCCeEEEEEEECCe--EEE--EEeecCCCcchhhhhccCcccccCCcccC
Q 047754 163 IFDNEGLEVL---------EAPILLQEFVNHGGIIFKVYVAGSS--VKC--VKRKSLPDISEEKMKSLKGFLPFSQISSN 229 (330)
Q Consensus 163 v~~~~~L~~l---------~~p~vvQefI~h~g~~~Kv~ViG~~--v~~--~~R~S~~~~~~~~~~~~~g~~~f~~~s~~ 229 (330)
+.++++|..+ +.|+++|+||+. .+.+.|-+++|. +++ .++.-.+. ++
T Consensus 728 v~~~~el~~~~~~a~~~~~~~~vlvEefI~g-~~E~~V~~l~d~~~v~~~~i~e~~~~~-------------------g~ 787 (1073)
T 1a9x_A 728 VYDEADLRRYFQTAVSVSNDAPVLLDHFLDD-AVEVDVDAICDGEMVLIGGIMEHIEQA-------------------GV 787 (1073)
T ss_dssp ECSHHHHHHHHHHCC--------EEEBCCTT-CEEEEEEEEECSSCEEEEEEEEESSCT-------------------TS
T ss_pred ECCHHHHHHHHHHHHhhCCCCcEEEEEccCC-CcEEEEEEEEECCeEEEEeeEEEEecc-------------------CC
Confidence 9999988752 358999999962 237877777543 332 22211110 11
Q ss_pred CCCCccccccccC-CCCc--hHHHHHHHHHHHHHhCC-cEEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 230 SVDADEEVDLEKT-EMPR--EGFVVELSRALREALGL-NLFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 230 ~~~~~~~~~~~~~-~~~~--~~~~~~lA~~~~~~LGl-~l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
+++.. ....+. .+++ .+.++++|.++.++||+ .++++|+++++ + .+||||||.-||
T Consensus 788 ~~gd~--~~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf~v~~--~-~~~viEvNpR~~ 847 (1073)
T 1a9x_A 788 HSGDS--ACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKN--N-EVYLIEVNPRAA 847 (1073)
T ss_dssp CGGGC--CEEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECS--S-CEEEEEEECSCC
T ss_pred ccCCc--eEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEC--C-eEEEEEEECCCc
Confidence 11100 001111 2222 46788999999999999 68899999963 3 379999999998
No 52
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.61 E-value=1.3e-14 Score=141.84 Aligned_cols=202 Identities=12% Similarity=0.107 Sum_probs=129.6
Q ss_pred CccEEEEccCChhH-HHHHHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhh
Q 047754 54 PFDCIMHKLYGPDW-TQQLQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTR 131 (330)
Q Consensus 54 ~~DvilhK~~~~~~-~~~l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~ 131 (330)
.+|+|+.- .+.. ...+.+.+++ -|++++ .++++++.+.||..+.++|.+ .|||+|++..+.+.++...
T Consensus 62 ~~d~v~~~--~E~~~~~~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~ 131 (424)
T 2yw2_A 62 GVDFTIVG--PEAPLVEGIVDEFEK-RGLKIFGPNKEAAKLEGSKAFAKTFMKK-------YGIPTARYEVFTDFEKAKE 131 (424)
T ss_dssp TCSEEEEC--SHHHHHTTHHHHHHH-TTCCEESCCTTTTHHHHCHHHHHHHHHH-------TTCCBCCEEEESCHHHHHH
T ss_pred CCCEEEEC--CchHHHHHHHHHHHH-CCCcEECcCHHHHHHHhCHHHHHHHHHH-------cCCCCCCeEEECCHHHHHH
Confidence 45666652 2221 1223333433 378888 889999999999999999986 7999999999988765432
Q ss_pred hHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEE--CC
Q 047754 132 DMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVA--GS 196 (330)
Q Consensus 132 ~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~Vi--G~ 196 (330)
.+ ..++||+|+||..+. +|.|+.++.+.++|.+. +.++++||||+ |.++.|.++ |+
T Consensus 132 --~~--~~~~~PvvvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~~G~ 202 (424)
T 2yw2_A 132 --YV--EKVGAPIVVKADGLA---AGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE--GEEASYIVMINGD 202 (424)
T ss_dssp --HH--HHHCSSEEEEESSCC---TTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETT
T ss_pred --HH--HHcCCcEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CcEEEEEEEEcCC
Confidence 23 457899999998853 46899999999887642 25899999996 789988877 44
Q ss_pred eEEEE--EeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCC-CCc--hHHH-HHHHHHHHHHh---CCc---
Q 047754 197 SVKCV--KRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTE-MPR--EGFV-VELSRALREAL---GLN--- 264 (330)
Q Consensus 197 ~v~~~--~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~-~~~--~~~~-~~lA~~~~~~L---Gl~--- 264 (330)
.++.. .|..-+ .+.++. +...+.. +...+.. +++ .+.+ ++++.++.++| |+.
T Consensus 203 ~~~~~~~~~~~~~------------~~~~~~--~~~~g~~--~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G 266 (424)
T 2yw2_A 203 RYVPLPTSQDHKR------------LLDEDK--GPNTGGM--GAYSPTPVINEEVEKRIREEIVERVIKGLKEEGIYYRG 266 (424)
T ss_dssp EEEECCCBEECCE------------EETTTE--EEECSCS--EEEESCTTSCHHHHHHHHHHTHHHHHHHHHHHTCCCEE
T ss_pred EEEeecceeeccc------------cccCCC--CCCCCCC--eeECCCccCCHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 44321 111100 011110 1111110 1112222 222 2334 46777777776 554
Q ss_pred EEEEEEEEeCCCCCeeEEEEeeCCCCCCC
Q 047754 265 LFNFDLIRDAGERDGYLVIDINYLPGYAK 293 (330)
Q Consensus 265 l~GvDvi~~~~~g~~~~ViEVN~fPg~~g 293 (330)
++++|++++. +| ++|+|||.-||-.+
T Consensus 267 ~~~ve~~~~~-~g--~~viEiN~R~g~~~ 292 (424)
T 2yw2_A 267 FLYAGLMITK-EG--PKVLEFNVRLGDPE 292 (424)
T ss_dssp EEEEEEEEET-TE--EEEEEEESSCCTTT
T ss_pred EEEEEEEEeC-CC--cEEEEEecCCCCcH
Confidence 4569999985 34 79999999998443
No 53
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.60 E-value=1.6e-14 Score=142.39 Aligned_cols=208 Identities=12% Similarity=0.074 Sum_probs=133.3
Q ss_pred HHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeC
Q 047754 71 LQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPL 149 (330)
Q Consensus 71 l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~ 149 (330)
+.+.+.+ -|++++ .+.++++.+.||..+.++|++ ++||+|++..+.+.++... .+ ..++||+|+||.
T Consensus 83 ~~~~l~~-~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~-------~GIptp~~~~~~~~~ea~~--~~--~~~g~PvVvKp~ 150 (431)
T 3mjf_A 83 VVDAFRA-AGLAIFGPTQAAAQLEGSKAFTKDFLAR-------HNIPSAEYQNFTDVEAALA--YV--RQKGAPIVIKAD 150 (431)
T ss_dssp HHHHHHH-TTCCEESCCHHHHHHHHCHHHHHHHHHH-------TTCSBCCEEEESCHHHHHH--HH--HHHCSSEEEEES
T ss_pred HHHHHHh-cCCCeeCCCHHHHHHhhCHHHHHHHHHH-------cCCCCCCeEeeCCHHHHHH--HH--HHcCCeEEEEEC
Confidence 4444444 378888 899999999999999999986 8999999999988766543 23 457999999998
Q ss_pred CCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECC--eEEEEEeecCCCcchhhh
Q 047754 150 EANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGS--SVKCVKRKSLPDISEEKM 214 (330)
Q Consensus 150 ~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~--~v~~~~R~S~~~~~~~~~ 214 (330)
.+. +|.|+.++.+.+++.+. ..++++||||+ |.++.|.++.| ++... +-.. ..
T Consensus 151 ~~~---gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~-----~~~~--~~ 218 (431)
T 3mjf_A 151 GLA---AGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD--GEEASFIVMVDGENVLPM-----ATSQ--DH 218 (431)
T ss_dssp SSC---TTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC--SEEEEEEEEEESSCEEEC-----CCBE--EC
T ss_pred CCC---CCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC--CcEEEEEEEEcCCEEEEE-----EeeE--ec
Confidence 643 56899999999887642 35899999996 89999988844 44321 1000 00
Q ss_pred hccCcccccCCcccCCCCCccccccccCC-CCc--hHHHHHH----HHHHHHHhCCcEE---EEEEEEeCCCCCeeEEEE
Q 047754 215 KSLKGFLPFSQISSNSVDADEEVDLEKTE-MPR--EGFVVEL----SRALREALGLNLF---NFDLIRDAGERDGYLVID 284 (330)
Q Consensus 215 ~~~~g~~~f~~~s~~~~~~~~~~~~~~~~-~~~--~~~~~~l----A~~~~~~LGl~l~---GvDvi~~~~~g~~~~ViE 284 (330)
+ ..+.++. ....+.. +...+.. +++ .+.+.+. +.++.+++|+.+. .+|++++. +|+ ++|||
T Consensus 219 ~---~~~~~~~--g~~~gg~--g~~~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~-~g~-~~viE 289 (431)
T 3mjf_A 219 K---RVGDGDT--GPNTGGM--GAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISA-DGQ-PKVIE 289 (431)
T ss_dssp C---EEETTTE--EEECSCS--EEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECT-TSC-EEEEE
T ss_pred e---ecccCCC--CCCCCCc--eEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeC-CCC-eEEEE
Confidence 0 0111111 1111110 1112222 221 2233332 4566678898654 49999985 453 79999
Q ss_pred eeCCCCCCCCC----CcHHHHHHHHHHHHHh
Q 047754 285 INYLPGYAKLP----GYETLLMDFFLNVAKS 311 (330)
Q Consensus 285 VN~fPg~~g~~----~~~~~l~~~i~~~~~~ 311 (330)
+|.-||....+ ..-..|.+.++..+..
T Consensus 290 iN~R~G~~~~~~i~~~~g~dl~~~~~~~~~G 320 (431)
T 3mjf_A 290 FNCRFGDPETQPIMLRMRSDLVELCLAGTQG 320 (431)
T ss_dssp ECGGGSTTTHHHHHHHBCSCHHHHHHHHHTT
T ss_pred EecCCCCcHHHHHHHHHCCCHHHHHHHHHcC
Confidence 99999943322 1224556666655544
No 54
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.59 E-value=2.7e-14 Score=141.08 Aligned_cols=225 Identities=13% Similarity=0.113 Sum_probs=139.2
Q ss_pred HHHHHCCCeEEEeCCCCCCC---------------------cCCCccEEEEccCChhH-HHHHHHHHHhCCCceec-ChH
Q 047754 31 TKATEQGIGLIRIDPDKPLT---------------------EQGPFDCIMHKLYGPDW-TQQLQQFSSRNPDVRII-DPP 87 (330)
Q Consensus 31 ~~~~~~Gi~~~~id~~~~l~---------------------~q~~~DvilhK~~~~~~-~~~l~~~~~~~p~v~vi-Dp~ 87 (330)
.++++.|++.+.+++..+-. .+..+|+|+.- .+.. ...+.+.+++ -|++++ .++
T Consensus 39 ~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~d~vi~~--~E~~~~~~~~~~l~~-~gi~~~g~~~ 115 (451)
T 2yrx_A 39 KAAQSPLVGKLYVAPGNPGIADVAELVHIDELDIEALVQFAKQQAIDLTIVG--PEAPLASGIVDRFMA-EGLRIFGPSQ 115 (451)
T ss_dssp HHHTCTTEEEEEEEECCTTGGGTSEECCCCTTCHHHHHHHHHHTTCSEEEEC--SHHHHHTTHHHHHHH-TTCCEESCCH
T ss_pred HHHhcCCCCEEEEECCChhhhhhCceeccCCCCHHHHHHHHHHcCCCEEEEC--CchHHHHHHHHHHHH-CCCCEeCccH
Confidence 33466788877776543210 01346776652 2221 1233333433 378887 788
Q ss_pred HHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChh
Q 047754 88 ESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNE 167 (330)
Q Consensus 88 ~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~ 167 (330)
++++.+.||..+.++|++ .|||+|++..+.+.++... .+ ..++||+|+||..+. +|.|+.++.+.+
T Consensus 116 ~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~--~~--~~~~~PvVvKp~~~~---gg~Gv~~v~~~~ 181 (451)
T 2yrx_A 116 RAALIEGSKAFAKELMKK-------YGIPTADHAAFTSYEEAKA--YI--EQKGAPIVIKADGLA---AGKGVTVAQTVE 181 (451)
T ss_dssp HHHHHHHCHHHHHHHHHH-------TTCCBCCEEEESCHHHHHH--HH--HHHCSSEEEEECC-------CCEEEESSHH
T ss_pred HHHHHhhCHHHHHHHHHH-------cCCCCCCeEEECCHHHHHH--HH--HhcCCcEEEEeCCCC---CCCcEEEECCHH
Confidence 999999999999999986 7999999999988766542 23 457899999999854 468999999998
Q ss_pred hhhcC-------------CCCeEEEecccCCCeEEEEEEE--CCeEEEEE--eecCCCcchhhhhccCcccccCCcccCC
Q 047754 168 GLEVL-------------EAPILLQEFVNHGGIIFKVYVA--GSSVKCVK--RKSLPDISEEKMKSLKGFLPFSQISSNS 230 (330)
Q Consensus 168 ~L~~l-------------~~p~vvQefI~h~g~~~Kv~Vi--G~~v~~~~--R~S~~~~~~~~~~~~~g~~~f~~~s~~~ 230 (330)
++... ..++++||||+ |.++.|.++ |+.+.... |.. . ..+.++. +..
T Consensus 182 el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~~~~~~~~~~~~-~-----------~~~~~~~--~~~ 245 (451)
T 2yrx_A 182 EALAAAKAALVDGQFGTAGSQVVIEEYLE--GEEFSFMAFVNGEKVYPLAIAQDH-K-----------RAYDGDE--GPN 245 (451)
T ss_dssp HHHHHHHHHHHHSCCBTTBCCEEEEECCC--SEEEEEEEEEETTEEEECCCBEEC-C-----------EEETTTE--EEE
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCc--CcEEEEEEEEcCCEEEEeeeEEec-c-----------ccccCCC--CCC
Confidence 87641 26899999996 889998887 33332211 110 0 0011110 111
Q ss_pred CCCccccccccCC-CCc--hHHH-HHHHHHHHHHh---CCc---EEEEEEEEeCCCCCeeEEEEeeCCCCCCC
Q 047754 231 VDADEEVDLEKTE-MPR--EGFV-VELSRALREAL---GLN---LFNFDLIRDAGERDGYLVIDINYLPGYAK 293 (330)
Q Consensus 231 ~~~~~~~~~~~~~-~~~--~~~~-~~lA~~~~~~L---Gl~---l~GvDvi~~~~~g~~~~ViEVN~fPg~~g 293 (330)
.+.. +...+.. +++ .+.+ ++++.++.++| |+. ++++|++++. +| ++|+|||.-||-.+
T Consensus 246 ~g~~--~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~~ 313 (451)
T 2yrx_A 246 TGGM--GAYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAGLMATA-NG--PKVIEFNARFGDPE 313 (451)
T ss_dssp CSCS--EEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTTH
T ss_pred CCCC--eEEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEEEEecCCCCcH
Confidence 1110 1112222 222 2333 55677777766 555 4568999985 34 79999999998544
No 55
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.57 E-value=1.9e-14 Score=140.59 Aligned_cols=202 Identities=8% Similarity=0.084 Sum_probs=129.3
Q ss_pred CccEEEEccCChhH-HHHHHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhh
Q 047754 54 PFDCIMHKLYGPDW-TQQLQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTR 131 (330)
Q Consensus 54 ~~DvilhK~~~~~~-~~~l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~ 131 (330)
.+|+|+.- .+.. ...+.+.+++ -|++++ .++++++.+.||..+.++|.+ .|||+|++..+.+.++...
T Consensus 62 ~~d~v~~~--~E~~~~~~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~ 131 (422)
T 2xcl_A 62 QVGLTIVG--PEVPLIEGLVDEFEK-AGLHVFGPSKAAAIIEGSKQFAKDLMKK-------YDIPTAEYETFTSFDEAKA 131 (422)
T ss_dssp TEEEEEEC--SHHHHHTTHHHHHHH-TTCCEESCCTTTTHHHHCHHHHHHHHHH-------TTCCBCCEEEESCHHHHHH
T ss_pred CCCEEEEC--CcHHHHHHHHHHHHH-CCCCEECcCHHHHHHhcCHHHHHHHHHH-------cCCCCCCeEEECCHHHHHH
Confidence 45666652 2221 1233333433 378888 899999999999999999986 7999999999988766542
Q ss_pred hHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEE--CC
Q 047754 132 DMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVA--GS 196 (330)
Q Consensus 132 ~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~Vi--G~ 196 (330)
.+ ..++||+|+||..+. +|.|+.++.+.+++... ..++++||||+ |+++.|.++ |+
T Consensus 132 --~~--~~~~~P~vvKp~~~~---~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~dG~ 202 (422)
T 2xcl_A 132 --YV--QEKGAPIVIKADGLA---AGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS--GEEFSLMAFVKGE 202 (422)
T ss_dssp --HH--HHHCSSEEEEESSCG---GGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETT
T ss_pred --HH--HhcCCCEEEEeCCCC---CCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc--CcEEEEEEEEcCC
Confidence 23 457899999998853 57899999999887642 26899999996 899998887 44
Q ss_pred eEEEE--EeecCCCcchhhhhccCcccccCCcccCCCCCccccccccCC-CCc--hHHH-HHHHHHHHHHh---CCc---
Q 047754 197 SVKCV--KRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTE-MPR--EGFV-VELSRALREAL---GLN--- 264 (330)
Q Consensus 197 ~v~~~--~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~-~~~--~~~~-~~lA~~~~~~L---Gl~--- 264 (330)
.++.. .|.. . ..+.++. +...+.. +...+.. +++ .+.+ ++++.++.++| |+.
T Consensus 203 ~~~~~~~~~~~-~-----------~~~~~~~--~~~~g~~--~~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G 266 (422)
T 2xcl_A 203 KVYPMVIAQDH-K-----------RAFDGDK--GPNTGGM--GAYSPVPQISEETVRHAVETIVKPAAKAMVQEGRSFTG 266 (422)
T ss_dssp EEEECCCBEEE-E-----------EEEGGGE--EEEEEEE--EEEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEE
T ss_pred EEEecceeeee-e-----------hhcCCCC--CCCCCCC--eeEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 33321 0100 0 0001100 0100100 1112222 222 2233 34777777776 555
Q ss_pred EEEEEEEEeCCCCCeeEEEEeeCCCCCCC
Q 047754 265 LFNFDLIRDAGERDGYLVIDINYLPGYAK 293 (330)
Q Consensus 265 l~GvDvi~~~~~g~~~~ViEVN~fPg~~g 293 (330)
++++|++++. +| ++|+|||.-||-.+
T Consensus 267 ~~~vd~~~~~-~g--~~viEiN~R~g~~~ 292 (422)
T 2xcl_A 267 VLYAGLMLTE-NG--SKVIEFNARFGDPE 292 (422)
T ss_dssp EEEEEEEEET-TE--EEEEEEESSCCTTT
T ss_pred EEEeeEEEeC-CC--cEEEEEecCCCCcH
Confidence 4668999985 34 79999999999655
No 56
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.57 E-value=4.7e-14 Score=137.83 Aligned_cols=259 Identities=10% Similarity=0.054 Sum_probs=157.1
Q ss_pred CCceEEEEEeccCCcccCcchHHHHHHHHCCCeEEEeCCCCCC----------C------cCCCccEEEEccCChhH-HH
Q 047754 7 QPYCKIGYVFAPNKEQTVIQPSLITKATEQGIGLIRIDPDKPL----------T------EQGPFDCIMHKLYGPDW-TQ 69 (330)
Q Consensus 7 ~~~~~vg~~~~~~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l----------~------~q~~~DvilhK~~~~~~-~~ 69 (330)
++..+|+..-+-.+...+ ..+++++.| ++..++-+ |- . .+..+|+|+.- .+.. .+
T Consensus 13 ~~~~~vlviG~Ggr~~a~----a~~~a~~~g-~v~~~~~n-p~~~~~d~~id~~~l~~~~~~~~~d~V~~~--~E~~~~a 84 (412)
T 1vkz_A 13 MKAVRVHILGSGGREHAI----GWAFAKQGY-EVHFYPGN-AGTKRDGTNHPYEGEKTLKAIPEEDIVIPG--SEEFLVE 84 (412)
T ss_dssp ---CEEEEEECSHHHHHH----HHHHHHTTC-EEEEEECC-TTGGGTSEECCCCTHHHHHTSCSSCEECCS--SGGGTCC
T ss_pred cccCEEEEECCCHHHHHH----HHHHHhCCC-CEEEECCC-hhhhcccccCCHHHHHHHHHHcCCCEEEEC--CcHHHHH
Confidence 344456666666443332 234467778 77777432 21 0 12356777762 2221 11
Q ss_pred HHHHHHHhCCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeC
Q 047754 70 QLQQFSSRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPL 149 (330)
Q Consensus 70 ~l~~~~~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~ 149 (330)
.+.+ +. +.++-.++++++.+.||..+.++|.+ .|||+|++..+.+.++... .+ ..++||+|+||.
T Consensus 85 ~~~~---~l-~~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~e~~~--~~--~~~g~PvvvKp~ 149 (412)
T 1vkz_A 85 GVSN---WR-SNVFGPVKEVARLEGSKVYAKRFMKK-------YGIRTARFEVAETPEELRE--KI--KKFSPPYVIKAD 149 (412)
T ss_dssp --------C-TTBSSCCHHHHHHHHCHHHHHHHHHH-------TTCCCCCEEEESSHHHHHH--HH--TTSCSSEEEEES
T ss_pred HHHH---Hh-hhhhCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCEEEECCHHHHHH--HH--HhcCCCEEEEeC
Confidence 2222 22 23566899999999999999999986 7999999999988765432 23 568999999999
Q ss_pred CCCCCCCCcceEEEeChhhhhcC-----------C--CCeEEEecccCCCeEEEEEEEC--CeEEEEEeecCCCcchhhh
Q 047754 150 EANGSDKSHQMYLIFDNEGLEVL-----------E--APILLQEFVNHGGIIFKVYVAG--SSVKCVKRKSLPDISEEKM 214 (330)
Q Consensus 150 ~a~Gs~~sh~m~iv~~~~~L~~l-----------~--~p~vvQefI~h~g~~~Kv~ViG--~~v~~~~R~S~~~~~~~~~ 214 (330)
.+. +|.||.++.+.++|... . .++++||||+ |+++.|.++. +.+..... ..+ .
T Consensus 150 ~~~---gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~--~~~-----~ 217 (412)
T 1vkz_A 150 GLA---RGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA--GNELSAMAVVNGRNFVILPF--VRD-----Y 217 (412)
T ss_dssp SCC---SSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC--SEEEEEEEEEETTEEEECCC--CEE-----C
T ss_pred CCC---CCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc--CcEEEEEEEECCCEEEEeee--eEe-----e
Confidence 854 46899999999887641 1 3899999996 8999998883 33322210 000 0
Q ss_pred hccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHh-----CC-cEEEEEEEEeCCCCCeeEEEEee
Q 047754 215 KSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREAL-----GL-NLFNFDLIRDAGERDGYLVIDIN 286 (330)
Q Consensus 215 ~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~L-----Gl-~l~GvDvi~~~~~g~~~~ViEVN 286 (330)
. ..+.++. +...+.. +...+..+++ .++++++|.++.++| +. .++++|++++. +| +||+|||
T Consensus 218 ~---~~~~~~~--~~~~g~~--~~~~P~~l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN 287 (412)
T 1vkz_A 218 K---RLMDGDR--GPNTGGM--GSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHD-GD--PYILEYN 287 (412)
T ss_dssp C---EEETTTE--EEECSCS--EEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEE
T ss_pred e---eccCCCC--CCCCCCc--eEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEEC-CC--cEEEEEe
Confidence 0 0011110 1111100 1112222332 356789999999999 44 46679999985 34 7899999
Q ss_pred CCCCCCCCCC----cHHHHHHHHHHHHH
Q 047754 287 YLPGYAKLPG----YETLLMDFFLNVAK 310 (330)
Q Consensus 287 ~fPg~~g~~~----~~~~l~~~i~~~~~ 310 (330)
.-||-.+.+. .-..+.+++...+.
T Consensus 288 ~R~g~~~~~~~~~~~g~d~~~~~~~~~~ 315 (412)
T 1vkz_A 288 VRLGDPETEVIVTLNPEGFVNAVLEGYR 315 (412)
T ss_dssp SSCCTTHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cCCCCCcceeehhhcCCCHHHHHHHHhc
Confidence 9998665422 23455566655553
No 57
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.57 E-value=8e-14 Score=141.28 Aligned_cols=182 Identities=15% Similarity=0.176 Sum_probs=120.9
Q ss_pred HHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEE---------------------------
Q 047754 71 LQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAV--------------------------- 122 (330)
Q Consensus 71 l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~--------------------------- 122 (330)
+.+.+.+ .|++++ .++++++.+.||..+.+++.+ .|||+|++..
T Consensus 140 ~a~~le~-~Gi~~iGp~~~ai~~~~DK~~~k~ll~~-------~GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 211 (540)
T 3glk_A 140 LPELLCK-NGVAFLGPPSEAMWALGDKIASTVVAQT-------LQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDK 211 (540)
T ss_dssp HHHHHHH-TTCEESSCCHHHHC---CHHHHHHHHHH-------TTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHH
T ss_pred HHHHHHH-cCCceeCCCHHHHHHhCCHHHHHHHHHH-------cCCCCCCcccccccccccccccccccccccccccccc
Confidence 3344444 389988 899999999999999999986 7999999876
Q ss_pred --ecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC---------CCCeEEEecccCCCeEEEE
Q 047754 123 --VSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL---------EAPILLQEFVNHGGIIFKV 191 (330)
Q Consensus 123 --~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~vvQefI~h~g~~~Kv 191 (330)
+.+.++.. .. ...++||+|+||..++ +|.||.++.++++|.+. +.++++|+||+ +++.+.|
T Consensus 212 ~~v~s~~ea~---~~-a~~igyPvVVKp~~gg---GG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~-g~rei~V 283 (540)
T 3glk_A 212 GCVKDVDEGL---EA-AERIGFPLMIKASEGG---GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEV 283 (540)
T ss_dssp TSCCSHHHHH---HH-HHHHCSSEEEEETTCC-------EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCS-SEEEEEE
T ss_pred cCcCCHHHHH---HH-HHhcCCcEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEE
Confidence 33333322 11 2568999999999864 46899999999888652 56899999995 2489999
Q ss_pred EEECCe---EEE-EEee-cCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCC--chHHHHHHHHHHHHHhCCc
Q 047754 192 YVAGSS---VKC-VKRK-SLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMP--REGFVVELSRALREALGLN 264 (330)
Q Consensus 192 ~ViG~~---v~~-~~R~-S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~lA~~~~~~LGl~ 264 (330)
-|++|. ++. ..|. +... .+. +... ..|.+ .++ ..+.+.++|.++.++||+.
T Consensus 284 ~vl~d~~G~vv~l~~rd~s~qr--------------~~~--k~ie-----~~Pa~-~l~~~~~~~l~~~a~~~~~alG~~ 341 (540)
T 3glk_A 284 QILADQYGNAVSLFGRDCSIQR--------------RHQ--KIVE-----EAPAT-IAPLAIFEFMEQCAIRLAKTVGYV 341 (540)
T ss_dssp EEEECTTSCEEEEEEEEEEEC-----------------C--CSEE-----EESCT-TSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred EEEEcCCCCEEEEeceeeeeee--------------ccc--ceEE-----ecCCC-CCCHHHHHHHHHHHHHHHHHcCCc
Confidence 999863 332 2232 1110 000 1100 01111 011 2467889999999999997
Q ss_pred -EEEEEEEEeCCCCCeeEEEEeeCCCCCC
Q 047754 265 -LFNFDLIRDAGERDGYLVIDINYLPGYA 292 (330)
Q Consensus 265 -l~GvDvi~~~~~g~~~~ViEVN~fPg~~ 292 (330)
.++||++++. +|+ +|++|||.=|+-.
T Consensus 342 G~~~VEf~~d~-dg~-~~~lEiNpR~~~~ 368 (540)
T 3glk_A 342 SAGTVEYLYSQ-DGS-FHFLELNPRLQVE 368 (540)
T ss_dssp EEEEEEEEEET-TSC-EEEEEEECSCCTT
T ss_pred cceEEEEEEcC-CCC-EEEEEEECCCCCc
Confidence 4559999985 454 7999999999843
No 58
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.56 E-value=1.2e-13 Score=141.15 Aligned_cols=180 Identities=14% Similarity=0.173 Sum_probs=126.2
Q ss_pred HHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEE----------------------------
Q 047754 72 QQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAV---------------------------- 122 (330)
Q Consensus 72 ~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~---------------------------- 122 (330)
.+.+.+ .|++++ .++++++.+.||..+.+++.+ .|||+|++..
T Consensus 157 a~~le~-~Gi~~iGp~~~ai~~~~DK~~ak~ll~~-------aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (587)
T 3jrx_A 157 PELLCK-NGVAFLGPPSEAMWALGDKIASTVVAQT-------LQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKG 228 (587)
T ss_dssp HHHHHT-TTCEESSCCHHHHHHHCSHHHHHHHHHH-------TTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTT
T ss_pred HHHHHH-CCCCeeCCCHHHHHHhCCHHHHHHHHHH-------cCCCCCCeecccccccccccccccccccccchhhcccc
Confidence 344444 489988 899999999999999999986 7999999875
Q ss_pred -ecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC---------CCCeEEEecccCCCeEEEEE
Q 047754 123 -VSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL---------EAPILLQEFVNHGGIIFKVY 192 (330)
Q Consensus 123 -~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~vvQefI~h~g~~~Kv~ 192 (330)
+.+.++.. .. ...++||+|+||..++ +|.||.++.++++|.+. +.++++|+||+ +++.+.|-
T Consensus 229 ~v~s~eea~---~~-a~~iGyPvVVKp~~Gg---GGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~-g~rei~V~ 300 (587)
T 3jrx_A 229 CVKDVDEGL---EA-AERIGFPLMIKASEGG---GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEVQ 300 (587)
T ss_dssp SCCSHHHHH---HH-HHHHCSSEEEEETTCC---SSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEE
T ss_pred ccCCHHHHH---HH-HHhcCCeEEEEeCCCC---CCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEE
Confidence 33333322 11 2568999999999864 46899999999888652 56899999995 34999999
Q ss_pred EECCe---EEE-EEee-cCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCC--chHHHHHHHHHHHHHhCCc-
Q 047754 193 VAGSS---VKC-VKRK-SLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMP--REGFVVELSRALREALGLN- 264 (330)
Q Consensus 193 ViG~~---v~~-~~R~-S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~lA~~~~~~LGl~- 264 (330)
|++|. ++. ..|. |.. ..+. ++.. ..|.+. ++ ..+.+.++|.++.+++|+.
T Consensus 301 vl~D~~G~vv~l~~rd~siq--------------rr~q--k~ie-----~aPa~~-l~~~~~~~i~~~A~~~a~alGy~G 358 (587)
T 3jrx_A 301 ILADQYGNAVSLFGRDCSIQ--------------RRHQ--KIVE-----EAPATI-APLAIFEFMEQCAIRLAKTVGYVS 358 (587)
T ss_dssp EEECSSSCEEEEEEEEEEEE--------------SSSC--EEEE-----EESCCS-SCHHHHHHHHHHHHHHHHHHTCCE
T ss_pred EEEcCCCCEEEEeeeecccc--------------cccc--ceeE-----ecCCCC-CCHHHHHHHHHHHHHHHHHcCCcc
Confidence 99873 332 2232 110 0000 1100 011110 11 2467889999999999997
Q ss_pred EEEEEEEEeCCCCCeeEEEEeeCCCCC
Q 047754 265 LFNFDLIRDAGERDGYLVIDINYLPGY 291 (330)
Q Consensus 265 l~GvDvi~~~~~g~~~~ViEVN~fPg~ 291 (330)
.++||++++. +|+ +|++|||.=|+-
T Consensus 359 ~~~VEfl~d~-dG~-~yflEINpRl~~ 383 (587)
T 3jrx_A 359 AGTVEYLYSQ-DGS-FHFLELNPRLQV 383 (587)
T ss_dssp EEEEEEEECS-SSC-EEEEEEESSCCT
T ss_pred eeEEEEEEeC-CCC-EEEEEEeCCCCC
Confidence 4559999975 454 899999999974
No 59
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.56 E-value=2.6e-14 Score=148.32 Aligned_cols=225 Identities=12% Similarity=0.150 Sum_probs=144.8
Q ss_pred chHHHHHHHHCCCeEEEeCCCCCCC-------c-------------------------CCCccEEEEccCCh-hHHHHHH
Q 047754 26 QPSLITKATEQGIGLIRIDPDKPLT-------E-------------------------QGPFDCIMHKLYGP-DWTQQLQ 72 (330)
Q Consensus 26 ~~~l~~~~~~~Gi~~~~id~~~~l~-------~-------------------------q~~~DvilhK~~~~-~~~~~l~ 72 (330)
..+++++|+++|+.++.++.+.+-. + +...|+|+.-.... .. ..+.
T Consensus 40 a~~iiraar~lGi~~vav~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~-~~~a 118 (675)
T 3u9t_A 40 ACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADSYLRGDRIIAAALASGAQAIHPGYGFLSEN-ADFA 118 (675)
T ss_dssp HHHHHHHHHHHTCEEEEEECSGGGGCHHHHTCSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTC-HHHH
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCchhHhhCCEEEEcCCCccccCccCHHHHHHHHHHhCcCEEEeCCcccccC-HHHH
Confidence 3568999999999999996542110 0 01245544322110 11 2233
Q ss_pred HHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEE--ecCchhhhhhHHHHHhcCCCcEEEeeC
Q 047754 73 QFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAV--VSETELVTRDMAIEELKLRFPLIAKPL 149 (330)
Q Consensus 73 ~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~--~~~~~~~~~~~~l~~~~l~fP~VvKp~ 149 (330)
+.+.+ .|++++ .++++++.+.||..+.+++.+ .|||+|++.. +.+.++... .. ..++||+|+||.
T Consensus 119 ~~le~-~Gi~~iGp~~~ai~~~~DK~~~k~~l~~-------~GVpvpp~~~~~~~s~~e~~~--~a--~~igyPvvvKp~ 186 (675)
T 3u9t_A 119 RACEE-AGLLFLGPPAAAIDAMGSKSAAKALMEE-------AGVPLVPGYHGEAQDLETFRR--EA--GRIGYPVLLKAA 186 (675)
T ss_dssp HHHHT-TTCEESSCCHHHHHHHTSHHHHHHHHHH-------TTCCBCCCCCSCCCCTTHHHH--HH--HHSCSSBCCBCC
T ss_pred HHHHH-cCCceeCCCHHHHHHhchHHHHHHHHHH-------cCcCcCCccccCCCCHHHHHH--HH--HhCCCcEEEEEC
Confidence 44434 378877 789999999999999999986 7999999865 445544432 22 568999999999
Q ss_pred CCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECC---eEEE-EEee-cCCCcch
Q 047754 150 EANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGS---SVKC-VKRK-SLPDISE 211 (330)
Q Consensus 150 ~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~---~v~~-~~R~-S~~~~~~ 211 (330)
.++ +|.||.++.++++|.+. +.++++|+||+. .+.+-|-|++| +++. ..|. |...
T Consensus 187 ~G~---Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g-~reiev~v~~d~~G~vv~l~~rd~s~qr--- 259 (675)
T 3u9t_A 187 AGG---GGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLK-PRHVEIQVFADRHGHCLYLNERDCSIQR--- 259 (675)
T ss_dssp C---------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSS-CBCEEEEEEECSSSCEEEEEEEECCCBS---
T ss_pred CCC---CCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCC-CcEEEEEEEEcCCCCEEEEeccccceee---
Confidence 864 46899999999888642 358999999963 37888888865 3433 3332 2110
Q ss_pred hhhhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCC
Q 047754 212 EKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYL 288 (330)
Q Consensus 212 ~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~f 288 (330)
.++ +.-. ..|.+ .+++ .+.+.++|.++.+++|+. .+++|++++. +|+ +|++|||.=
T Consensus 260 -----------~~q--k~ie-----~~Pa~-~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~-dG~-~~~iEiNpR 318 (675)
T 3u9t_A 260 -----------RHQ--KVVE-----EAPAP-GLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDE-RGQ-FFFMEMNTR 318 (675)
T ss_dssp -----------SSS--BCEE-----EESCS-SCCHHHHHHHHHHHHHHHHHTTCCSEEEEECCBCT-TSC-BCBCEEESS
T ss_pred -----------ccc--eEEE-----ECCCC-CCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcC-CCC-EEEEecccc
Confidence 000 1100 01111 1222 467889999999999995 6679999985 554 789999999
Q ss_pred CCC
Q 047754 289 PGY 291 (330)
Q Consensus 289 Pg~ 291 (330)
|+-
T Consensus 319 ~~~ 321 (675)
T 3u9t_A 319 LQV 321 (675)
T ss_dssp CCT
T ss_pred ccC
Confidence 974
No 60
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.54 E-value=1.1e-13 Score=136.53 Aligned_cols=185 Identities=11% Similarity=0.101 Sum_probs=121.7
Q ss_pred HHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCc-EEEeeCC
Q 047754 73 QFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFP-LIAKPLE 150 (330)
Q Consensus 73 ~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP-~VvKp~~ 150 (330)
+.+++ .|++++ +++++++.+.||..+.++|++ .|||+|++..+.+.++... .+ ..++|| +|+||..
T Consensus 106 ~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~--~~--~~~g~P~vvvKp~~ 173 (452)
T 2qk4_A 106 GNLRS-AGVQCFGPTAEAAQLESSKRFAKEFMDR-------HGIPTAQWKAFTKPEEACS--FI--LSADFPALVVKASG 173 (452)
T ss_dssp HHHHH-TTCCEESCCTTTTHHHHBHHHHHHHHHH-------TTCCBCCEEEESSHHHHHH--HH--HHCSSCEEEEEESB
T ss_pred HHHHh-cCCcEeCcCHHHHHHhcCHHHHHHHHHH-------CCCCCCCeEEECCHHHHHH--HH--HhCCCCeEEEEeCC
Confidence 33333 378888 889999999999999999986 7999999999988765432 23 468999 9999988
Q ss_pred CCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEEC-C-eEEEEE--eecCCCcchhh
Q 047754 151 ANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAG-S-SVKCVK--RKSLPDISEEK 213 (330)
Q Consensus 151 a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG-~-~v~~~~--R~S~~~~~~~~ 213 (330)
+. +|.|+.++.+.++|... ..++++||||+ |+++.|.+++ + .+.... |..-+
T Consensus 174 ~~---gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~~~~~~~~~~~~~~------ 242 (452)
T 2qk4_A 174 LA---AGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD--GEEVSCLCFTDGKTVAPMPPAQDHKR------ 242 (452)
T ss_dssp C------CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC--SEEEEEEEEECSSCEEECCCBEEEEE------
T ss_pred CC---CCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCeEEEEEEECCCEEEEcceeeeccc------
Confidence 53 46899999999887641 25899999996 8999998884 3 243211 10000
Q ss_pred hhccCcccccCCcccCCCCCccccccccCC-CCc--hHHHH-HHHHHHHHHh---CC---cEEEEEEEEeCCCCCeeEEE
Q 047754 214 MKSLKGFLPFSQISSNSVDADEEVDLEKTE-MPR--EGFVV-ELSRALREAL---GL---NLFNFDLIRDAGERDGYLVI 283 (330)
Q Consensus 214 ~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~-~~~--~~~~~-~lA~~~~~~L---Gl---~l~GvDvi~~~~~g~~~~Vi 283 (330)
.+.++. +...+. .+...+.. +++ .+.+. ++|.++.++| |+ .++++|++++. +| ++|+
T Consensus 243 ------~~~~~~--~~~~g~--~~~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~vi 309 (452)
T 2qk4_A 243 ------LLEGDG--GPNTGG--MGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTK-NG--PKVL 309 (452)
T ss_dssp ------EETTTE--EEEEEE--EEEEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEET-TE--EEEE
T ss_pred ------ccCCCC--CCCCCC--ceeeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEE
Confidence 000000 000000 01112222 222 23443 6788888776 44 36789999985 34 7999
Q ss_pred EeeCCCCCCC
Q 047754 284 DINYLPGYAK 293 (330)
Q Consensus 284 EVN~fPg~~g 293 (330)
|||.-||-.+
T Consensus 310 EiN~R~~~~~ 319 (452)
T 2qk4_A 310 EFNCRFGDPE 319 (452)
T ss_dssp EEESSCCTTT
T ss_pred EEeccCCCcH
Confidence 9999999543
No 61
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.53 E-value=2.8e-14 Score=148.25 Aligned_cols=182 Identities=14% Similarity=0.200 Sum_probs=87.2
Q ss_pred HHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE--EecCchhhhhhHHHHHhcCCCcEEEe
Q 047754 71 LQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQA--VVSETELVTRDMAIEELKLRFPLIAK 147 (330)
Q Consensus 71 l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~l~~~~l~fP~VvK 147 (330)
+.+.++++ |++++ .++++++.+.||..+.+++.+ .|||+|++. .+.+.++... .. ..++||+|+|
T Consensus 91 ~a~~le~~-Gi~~iGp~~~ai~~~~dK~~~k~~l~~-------~GVPvpp~~~~~~~s~~e~~~--~a--~~igyPvVvK 158 (681)
T 3n6r_A 91 FAEALEAE-GVIFVGPPKGAIEAMGDKITSKKIAQE-------ANVSTVPGYMGLIEDADEAVK--IS--NQIGYPVMIK 158 (681)
T ss_dssp HHHHHHTT-TCCCSSSCHHHHHHTTSHHHHHHHHHT-------TTCCCCCC-----------------------------
T ss_pred HHHHHHHc-CCceECCCHHHHHHhCCHHHHHHHHHH-------cCcCcCCccccCcCCHHHHHH--HH--HhcCCcEEEE
Confidence 44444443 78887 789999999999999999986 799999975 5555544432 22 5789999999
Q ss_pred eCCCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCe---EE-EEEee-cCCCc
Q 047754 148 PLEANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSS---VK-CVKRK-SLPDI 209 (330)
Q Consensus 148 p~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~---v~-~~~R~-S~~~~ 209 (330)
|..++ +|.||.++.++++|... +.++++|+||+. .+.+.|.|++|. ++ ...|. |...
T Consensus 159 p~~gg---ggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g-~rei~V~v~~d~~G~vv~l~~rd~s~qr- 233 (681)
T 3n6r_A 159 ASAGG---GGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQ-PRHIEIQVLCDSHGNGIYLGERECSIQR- 233 (681)
T ss_dssp -----------------------------------------------CCS-CEEEEEEEECCSSSCCEEEEEEECCCEE-
T ss_pred ECCCC---CCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCC-CcEEEEEEEEeCCCCEEEEeeeecceec-
Confidence 99854 56899999999888652 248999999963 389999999863 22 22232 2100
Q ss_pred chhhhhccCcccccCCcccCCCCCccccccccCCCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEee
Q 047754 210 SEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDIN 286 (330)
Q Consensus 210 ~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN 286 (330)
.+. +.-. ..|.+ .+++ .+.+.++|.++.+++|+. .+.+|++++. +|+ +|++|+|
T Consensus 234 -------------~~~--k~~e-----~~Pa~-~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~d~-dg~-~~~lEiN 290 (681)
T 3n6r_A 234 -------------RNQ--KVVE-----EAPSP-FLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDG-QKN-FYFLEMN 290 (681)
T ss_dssp -------------TTE--ECEE-----EESCS-SCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECT-TSC-CCCCEEE
T ss_pred -------------cCc--cEEE-----ecCCC-CCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEeC-CCC-EEEEecc
Confidence 000 1100 01111 1222 467889999999999997 4459999985 454 7899999
Q ss_pred CCCCCC
Q 047754 287 YLPGYA 292 (330)
Q Consensus 287 ~fPg~~ 292 (330)
.=|+-.
T Consensus 291 pR~~~~ 296 (681)
T 3n6r_A 291 TRLQVE 296 (681)
T ss_dssp CSCCTT
T ss_pred cccCCC
Confidence 998643
No 62
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.53 E-value=4.3e-13 Score=146.23 Aligned_cols=222 Identities=14% Similarity=0.206 Sum_probs=144.2
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCCc---------------------------------CCCccEEEEccCC-hhHHHHHH
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLTE---------------------------------QGPFDCIMHKLYG-PDWTQQLQ 72 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~~---------------------------------q~~~DvilhK~~~-~~~~~~l~ 72 (330)
.+++++|+++|+.++.++.+.+-.. +...|+|+.-... .+. ..+.
T Consensus 17 ~riiraa~elGi~vVav~s~~d~~s~~~~~ADe~~~ig~~~~~~~syld~~~Ii~~a~~~~~DaI~pg~gflsE~-~~~a 95 (1150)
T 3hbl_A 17 IRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSEN-EQFA 95 (1150)
T ss_dssp HHHHHHHHHTTCEEEEEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHHHHHHHHTTCSEEECTTTTSTTC-HHHH
T ss_pred HHHHHHHHHCCCEEEEEEcCCcccchhhhhcceeeecCCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccc-HHHH
Confidence 4688999999999999976532110 0124555443211 011 2333
Q ss_pred HHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE--EecCchhhhhhHHHHHhcCCCcEEEeeC
Q 047754 73 QFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQA--VVSETELVTRDMAIEELKLRFPLIAKPL 149 (330)
Q Consensus 73 ~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~l~~~~l~fP~VvKp~ 149 (330)
+.+.++ |++++ .++++++.+.||..+.+++.+ .|||+|++. .+.+.++... . ...++||+|+||.
T Consensus 96 ~~le~~-Gi~~iGp~~eai~~~~DK~~~r~ll~~-------aGIPvpp~~~~~v~s~eea~~--~--a~~iGyPvVVKP~ 163 (1150)
T 3hbl_A 96 RRCAEE-GIKFIGPHLEHLDMFGDKVKARTTAIK-------ADLPVIPGTDGPIKSYELAKE--F--AEEAGFPLMIKAT 163 (1150)
T ss_dssp HHHHHT-TCEESSSCHHHHHHHHSHHHHHHHHHH-------TTCCBCCBCSSCBCSSSTTTT--T--GGGTCSSEEEECC
T ss_pred HHHHHC-CCCeeCCCHHHHHHhCCHHHHHHHHHH-------cCcCCCCccccCCCCHHHHHH--H--HHHcCCCEEEEeC
Confidence 444443 78887 889999999999999999986 799999998 6666655432 1 2678999999999
Q ss_pred CCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCe---EE-EEEee-cCCCcch
Q 047754 150 EANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSS---VK-CVKRK-SLPDISE 211 (330)
Q Consensus 150 ~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~---v~-~~~R~-S~~~~~~ 211 (330)
.++ +|+||.++.++++|.+. +.++++|+||+ +.+.+-|-++++. ++ ...|. |...
T Consensus 164 ~Gg---Gg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~-G~reieV~vl~d~~G~vv~l~er~~s~qr--- 236 (1150)
T 3hbl_A 164 SGG---GGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYID-NPKHIEVQVIGDEHGNIVHLFERDCSVQR--- 236 (1150)
T ss_dssp C----------CEECCSSSCTHHHHSSSSSCC------CBEEECCCS-SCEEEEEEEEECSSSCEEEEEEEEEEEES---
T ss_pred CCC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccC-CCcEEEEEEEEeCCCCEEEEEeeccceec---
Confidence 864 46899999999887641 35899999996 2378998888763 33 23332 1100
Q ss_pred hhhhccCcccccCCcccCCCCCccccccccC-CCCc--hHHHHHHHHHHHHHhCCcEEE-EEEEEeCCCCCeeEEEEeeC
Q 047754 212 EKMKSLKGFLPFSQISSNSVDADEEVDLEKT-EMPR--EGFVVELSRALREALGLNLFN-FDLIRDAGERDGYLVIDINY 287 (330)
Q Consensus 212 ~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~-~~~~--~~~~~~lA~~~~~~LGl~l~G-vDvi~~~~~g~~~~ViEVN~ 287 (330)
.++ +. ....+. .+++ .+.+.++|.++.+++|+.-+| +|++++.+ .+|+||||.
T Consensus 237 ------------~~~-k~-------~e~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~vEflvd~d---~~y~iEINp 293 (1150)
T 3hbl_A 237 ------------RHQ-KV-------VEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGD---EFFFIEVNP 293 (1150)
T ss_dssp ------------SSC-EE-------EEESSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETT---EEEEEEEEC
T ss_pred ------------cCc-ee-------EEecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECC---eEEEEEEeC
Confidence 000 00 000111 1222 457889999999999998655 99999853 489999999
Q ss_pred CCCC
Q 047754 288 LPGY 291 (330)
Q Consensus 288 fPg~ 291 (330)
=|+-
T Consensus 294 R~~g 297 (1150)
T 3hbl_A 294 RVQV 297 (1150)
T ss_dssp SCCT
T ss_pred CCCC
Confidence 9873
No 63
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.50 E-value=1.9e-13 Score=149.17 Aligned_cols=224 Identities=14% Similarity=0.157 Sum_probs=110.4
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCC-------c--------------------------------CCCccEEEEccC--Ch
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLT-------E--------------------------------QGPFDCIMHKLY--GP 65 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~-------~--------------------------------q~~~DvilhK~~--~~ 65 (330)
.+++++|+++|+.++.+|.+.+-. + +..+|+|+.-.. .+
T Consensus 27 ~riiraa~elGi~vvav~s~~d~~a~~~~~ADe~~~i~~~~~~~~~~~~~~~yld~~~I~~~a~~~~iD~V~pg~g~lsE 106 (1165)
T 2qf7_A 27 IRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSE 106 (1165)
T ss_dssp HHHHHHHHHTTCEEEEEECGGGTTCHHHHSSSSEEECSCSTTSSSCCCTTHHHHCHHHHHHHHHHHTCSEEECCSSTTTT
T ss_pred HHHHHHHHHcCCEEEEEECCCcccchhHHhCCEEEEcCCcccccccCCccccccCHHHHHHHHHHhCCCEEEECCCchhc
Confidence 568899999999999998864311 0 012445443211 11
Q ss_pred hHHHHHHHHHHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE--EecCchhhhhhHHHHHhcCCC
Q 047754 66 DWTQQLQQFSSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQA--VVSETELVTRDMAIEELKLRF 142 (330)
Q Consensus 66 ~~~~~l~~~~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~l~~~~l~f 142 (330)
. ..+.+.+++ -|++++ .++++++.+.||..+.+++.+ .|||+|++. .+.+.++... .. ..++|
T Consensus 107 ~--~~~a~~le~-~Gi~~iGp~~~ai~~~~DK~~~k~~l~~-------~GIPvp~~~~~~v~s~eea~~--~a--~~igy 172 (1165)
T 2qf7_A 107 S--PEFVDACNK-AGIIFIGPKADTMRQLGNKVAARNLAIS-------VGVPVVPATEPLPDDMAEVAK--MA--AAIGY 172 (1165)
T ss_dssp C--HHHHHHHHH-TTCEESSCCHHHHHHHHSHHHHHHHHHH-------TTCCBC--------------------------
T ss_pred C--HHHHHHHHH-cCCceECCCHHHHHHHCCHHHHHHHHHH-------cCCCCCCeeCcCCCCHHHHHH--HH--HhcCC
Confidence 1 123344433 378776 678999999999999999986 799999998 5666554432 22 56899
Q ss_pred cEEEeeCCCCCCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCe---EEE-EEee-
Q 047754 143 PLIAKPLEANGSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSS---VKC-VKRK- 204 (330)
Q Consensus 143 P~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~---v~~-~~R~- 204 (330)
|+|+||..++ +|.||.++.++++|.+. +.++++||||+ +|+.+.|.+++|. ++. ..|.
T Consensus 173 PvVVKp~~g~---GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~-gg~EisV~vl~D~~G~vv~l~~r~~ 248 (1165)
T 2qf7_A 173 PVMLKASWGG---GGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVE-RARHVESQILGDTHGNVVHLFERDC 248 (1165)
T ss_dssp --------------------------------------------------CCCS-SEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecc-CCcEEEEEEEEcCCCcEEEEEeecc
Confidence 9999998864 46899999999888642 25799999996 4789999999863 432 2231
Q ss_pred cCCCcchhhhhccCcccccCCcccCCCCCccccccccC-CCCc--hHHHHHHHHHHHHHhCCcEE-EEEEEEeCCCCCee
Q 047754 205 SLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKT-EMPR--EGFVVELSRALREALGLNLF-NFDLIRDAGERDGY 280 (330)
Q Consensus 205 S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~-~~~~--~~~~~~lA~~~~~~LGl~l~-GvDvi~~~~~g~~~ 280 (330)
+.. . .+ + +. ....+. .+++ .+.+.++|.++.+++|+.-+ ++|++++..+| .+
T Consensus 249 s~~-------r-------~~-~-~~-------~e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg-~~ 304 (1165)
T 2qf7_A 249 SVQ-------R-------RN-Q-KV-------VERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYLMDADTG-KF 304 (1165)
T ss_dssp EEE-------E-------TT-E-EE-------EEEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EE
T ss_pred cce-------e-------cc-c-ce-------EEecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEEEEEECCCC-CE
Confidence 110 0 00 0 00 001111 1222 45788999999999999854 59999983345 48
Q ss_pred EEEEeeCCCCCC
Q 047754 281 LVIDINYLPGYA 292 (330)
Q Consensus 281 ~ViEVN~fPg~~ 292 (330)
|+||||.-||..
T Consensus 305 ~~iEiNpR~~~~ 316 (1165)
T 2qf7_A 305 YFIEVNPRIQVE 316 (1165)
T ss_dssp EEEEEECSCCTT
T ss_pred EEEEEEcCCCCC
Confidence 999999998843
No 64
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.49 E-value=7.2e-13 Score=134.47 Aligned_cols=174 Identities=14% Similarity=0.115 Sum_probs=118.7
Q ss_pred ceecC-hHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEe--------------------------cCchhhhhhH
Q 047754 81 VRIID-PPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVV--------------------------SETELVTRDM 133 (330)
Q Consensus 81 v~viD-p~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~--------------------------~~~~~~~~~~ 133 (330)
+.++- ++++++.+.||..+.+++++ .|||+|++..+ .+.++..
T Consensus 158 i~~~gp~~~a~~~~~dK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~--- 227 (554)
T 1w96_A 158 VIFIGPPGNAMRSLGDKISSTIVAQS-------AKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGL--- 227 (554)
T ss_dssp CEESSCCHHHHHHSCSHHHHHHHHHH-------TTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHH---
T ss_pred EEEeCCCHHHHHHHhCHHHHHHHHHH-------CCCCcCCccccccccccccccccccccccccccccCCCCHHHHH---
Confidence 65554 57799999999999999986 79999998654 2222221
Q ss_pred HHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChhhhhcC---------CCCeEEEecccCCCeEEEEEEECC---eEEE-
Q 047754 134 AIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVL---------EAPILLQEFVNHGGIIFKVYVAGS---SVKC- 200 (330)
Q Consensus 134 ~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l---------~~p~vvQefI~h~g~~~Kv~ViG~---~v~~- 200 (330)
.. ...++||+|+||..+. +|.||.++.++++|... ..++++||||+ +++.+.|.++++ +++.
T Consensus 228 ~~-~~~~g~PvVvKp~~g~---gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~-g~~e~sv~vl~d~~G~vv~l 302 (554)
T 1w96_A 228 QK-AKRIGFPVMIKASEGG---GGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAG-RARHLEVQLLADQYGTNISL 302 (554)
T ss_dssp HH-HHHHCSSEEEEETTCC---TTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEECTTSCEEEE
T ss_pred HH-HHHcCCCEEEEECCCC---CCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEEE
Confidence 11 2468999999999864 46899999999888752 46899999997 468999998875 3432
Q ss_pred EEee-cCCCcchhhhhccCcccccCCcccCCCCCccccccccCCCC--chHHHHHHHHHHHHHhCCc-EEEEEEEEeCCC
Q 047754 201 VKRK-SLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMP--REGFVVELSRALREALGLN-LFNFDLIRDAGE 276 (330)
Q Consensus 201 ~~R~-S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~ 276 (330)
..|. +... ++. ++-. ..|.. .++ ..+.+.++|.++.++||+. .+++|++++..+
T Consensus 303 ~~~~~~~~~--------------~~~--k~~~-----~~P~~-~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~d 360 (554)
T 1w96_A 303 FGRDCSVQR--------------RHQ--KIIE-----EAPVT-IAKAETFHEMEKAAVRLGKLVGYVSAGTVEYLYSHDD 360 (554)
T ss_dssp EEEEEEEEE--------------TTE--EEEE-----EESCC-SSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEECTTT
T ss_pred eeeeeeeEe--------------ecc--ceee-----eCCCc-CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCC
Confidence 2221 1100 000 0000 00111 011 1467889999999999995 667999997334
Q ss_pred CCeeEEEEeeCCCCCC
Q 047754 277 RDGYLVIDINYLPGYA 292 (330)
Q Consensus 277 g~~~~ViEVN~fPg~~ 292 (330)
|+ +||+|||.=||-.
T Consensus 361 g~-~~~iEiN~R~~g~ 375 (554)
T 1w96_A 361 GK-FYFLELNPRLQVE 375 (554)
T ss_dssp CC-EEEEEEECSCCTT
T ss_pred CC-EEEEEeeCCCCcc
Confidence 53 7999999977643
No 65
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.45 E-value=8.3e-13 Score=144.60 Aligned_cols=224 Identities=15% Similarity=0.235 Sum_probs=106.9
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCC--------------------------------cCCCccEEEEccCChhHHHHHHHH
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLT--------------------------------EQGPFDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~--------------------------------~q~~~DvilhK~~~~~~~~~l~~~ 74 (330)
.+++++|+++|++++.++.+.+.. .+...|+|+.-.....--..+.+.
T Consensus 44 ~~iiraar~lGi~vVaV~s~~d~~a~~~~~ADe~~~i~p~~~~~syld~~~Il~~a~~~~iDaI~pg~g~lsEn~~~a~~ 123 (1236)
T 3va7_A 44 VRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSENADFSDR 123 (1236)
T ss_dssp HHHHHHHHHHTCEEEEEECSGGGGCHHHHHSSEEEECCCSSTTTTTTCHHHHHHHHHHTTCSEEECCSSGGGGCHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEcCCCcCchhhhhCCEEEEeCCCcccccccCHHHHHHHHHHhCCCEEEECCccccccHHHHHH
Confidence 568999999999999995442100 012356655433111000233344
Q ss_pred HHhCCCceec-ChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCc-EEEecCchhhhhhHHHHHhcCCCcEEEeeCCCC
Q 047754 75 SSRNPDVRII-DPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPN-QAVVSETELVTRDMAIEELKLRFPLIAKPLEAN 152 (330)
Q Consensus 75 ~~~~p~v~vi-Dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~-~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~ 152 (330)
+.+ .|++++ .++++++.+.||..+.+++.+ .|||+|+ +.++.+.++... .. ..++||+|+||..++
T Consensus 124 le~-~Gi~~iGps~eai~~~~DK~~ak~ll~~-------aGIPvpp~~~~v~s~eea~~--~a--~~iGyPvVVKP~~Gg 191 (1236)
T 3va7_A 124 CSQ-ENIVFVGPSGDAIRKLGLKHSAREIAER-------AKVPLVPGSGLIKDAKEAKE--VA--KKLEYPVMVKSTAGG 191 (1236)
T ss_dssp HHT-TTCEESSCCHHHHHHHHSTTHHHHHHHH-------TTCCCCC----------------------------------
T ss_pred HHH-CCCCeeCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCeeEecCCHHHHHH--HH--HHcCCCEEEEeCCCC
Confidence 444 478886 889999999999999999986 7999988 455666554432 22 678999999998754
Q ss_pred CCCCCcceEEEeChhhhhcC-------------CCCeEEEecccCCCeEEEEEEECCe---EEEE-Eee-cCCCcchhhh
Q 047754 153 GSDKSHQMYLIFDNEGLEVL-------------EAPILLQEFVNHGGIIFKVYVAGSS---VKCV-KRK-SLPDISEEKM 214 (330)
Q Consensus 153 Gs~~sh~m~iv~~~~~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG~~---v~~~-~R~-S~~~~~~~~~ 214 (330)
+|.||.++.++++|.+. +.++++||||+ +++.+.|.+++|. +... .|. |..
T Consensus 192 ---GGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~-G~rEisV~vl~Dg~g~vv~l~~rd~s~q------- 260 (1236)
T 3va7_A 192 ---GGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVN-NARHVEIQMMGDGFGKAIAIGERDCSLQ------- 260 (1236)
T ss_dssp ---------------------------------------------CCEEEEEEEEEESSSCEEEEEEEEEEEE-------
T ss_pred ---CCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccC-CCeEEEEEEEecCCceEEEEeeeeeeee-------
Confidence 56899999999888642 34799999996 2589999999762 3322 221 110
Q ss_pred hccCcccccCCcccCCCCCccccccccC-CCCc--hHHHHHHHHHHHHHhCCc-EEEEEEEEeCCCCCeeEEEEeeCCCC
Q 047754 215 KSLKGFLPFSQISSNSVDADEEVDLEKT-EMPR--EGFVVELSRALREALGLN-LFNFDLIRDAGERDGYLVIDINYLPG 290 (330)
Q Consensus 215 ~~~~g~~~f~~~s~~~~~~~~~~~~~~~-~~~~--~~~~~~lA~~~~~~LGl~-l~GvDvi~~~~~g~~~~ViEVN~fPg 290 (330)
..+. ++ ....+. .+++ .+++.++|.++.+++|+. .+++|++++..++ .+|+||||.=++
T Consensus 261 -------r~~~--k~-------~e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g-~~y~iEINpRl~ 323 (1236)
T 3va7_A 261 -------RRNQ--KV-------IEETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRD-EFYFLEVNARLQ 323 (1236)
T ss_dssp -------ETTE--EE-------EEEESCSSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT-EEEEEEEECSCC
T ss_pred -------ecCc--ce-------EEEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-cEEEEEEECCCC
Confidence 0000 11 000111 1222 457889999999999997 5669999986445 489999998775
No 66
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=2.3e-12 Score=101.77 Aligned_cols=91 Identities=14% Similarity=0.210 Sum_probs=68.7
Q ss_pred HHHhcCHHHHHHHHHhhhhhhcCCCccCCcEE--EecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeChh
Q 047754 90 IERLHNRDSMLEVVSRLKIELNKEKVSVPNQA--VVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNE 167 (330)
Q Consensus 90 i~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~~ 167 (330)
...++||..+.++|.+ .|||+|++. .+.+.++... .. ..++||+|+||..+. +|.++.++.+.+
T Consensus 3 ~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~~~~~~~~--~~--~~~~~P~vvKp~~~~---~~~gv~~v~~~~ 68 (108)
T 2cqy_A 3 SGSSGDKIESKLLAKK-------AEVNTIPGFDGVVKDAEEAVR--IA--REIGYPVMIKASAGG---GGKGMRIAWDDE 68 (108)
T ss_dssp CCCCCCCCCSTTCCCS-------SCCCCCSCCCSCBSSHHHHHH--HH--HHHCSSEEEEETTSC---CTTTCEEESSHH
T ss_pred hhhhcCHHHHHHHHHH-------cCCCCCCCcccccCCHHHHHH--HH--HhcCCCEEEEECCCC---CCccEEEeCCHH
Confidence 3467888888888774 899999997 7776655432 22 458999999999854 467999999998
Q ss_pred hhhcC-------------CCCeEEEecccCCCeEEEEEEEC
Q 047754 168 GLEVL-------------EAPILLQEFVNHGGIIFKVYVAG 195 (330)
Q Consensus 168 ~L~~l-------------~~p~vvQefI~h~g~~~Kv~ViG 195 (330)
+|... +.++++||||+. .+++.|.|+|
T Consensus 69 el~~~~~~~~~~~~~~~~~~~~lvee~i~g-~~E~~v~v~g 108 (108)
T 2cqy_A 69 ETRDGFRLSSQEAASSFGDDRLLIEKFIDN-PRHISGPSSG 108 (108)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCEEEEECCSS-SSCCCSCCCC
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEeeccCC-CcEEEEEecC
Confidence 87641 468999999963 3588877776
No 67
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.05 E-value=3.4e-09 Score=100.61 Aligned_cols=219 Identities=10% Similarity=0.075 Sum_probs=120.2
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCC--------c---CCC-c-cEEEEccCC----h-hHHH--HHHHHHHhCCCceecCh
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLT--------E---QGP-F-DCIMHKLYG----P-DWTQ--QLQQFSSRNPDVRIIDP 86 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~--------~---q~~-~-DvilhK~~~----~-~~~~--~l~~~~~~~p~v~viDp 86 (330)
..++.+|+++|+.+..+|...+-. + ... + | +-+..+ + .+.. .+.. + +..++++..+
T Consensus 14 ~~~~~aAk~lG~~viv~d~~~~~p~~~a~~~ad~~~~~~~~~d--l~~~~dvitpe~e~v~~~~l~~-l-e~~~~p~~p~ 89 (320)
T 2pbz_A 14 LQILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEMTS--ILNDDGIVVPHGSFVAYLGIEA-I-EKAKARFFGN 89 (320)
T ss_dssp HHHHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECSCSCC--TTCCSSBCCCBTTHHHHSCHHH-H-HTCCSCCBSC
T ss_pred HHHHHHHHHCCCEEEEEECCCCCccchhhhcCCeEEECCcHHH--HHhcCCEEEecccchhHHHHHH-H-HHcCCCcCCC
Confidence 458899999999999999984221 1 111 2 2 111111 1 1111 1112 2 2457999999
Q ss_pred HHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEEeCh
Q 047754 87 PESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDN 166 (330)
Q Consensus 87 ~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv~~~ 166 (330)
.+++....||....++|.+ .|||+|++.. .++. .++||+|+||..+ + +|+|+.++.+
T Consensus 90 ~~~l~~~~dr~~~~~~l~~-------~Gip~P~~~~---~ee~---------~i~~PviVKp~~g--~-ggkG~~~v~~- 146 (320)
T 2pbz_A 90 RRFLKWETTFELQDKALEG-------AGIPRVEVVE---PEDA---------KPDELYFVRIEGP--R-GGSGHFIVEG- 146 (320)
T ss_dssp SSGGGGGSCHHHHHHHHHH-------HTCCBCCBCC---SCCC---------CSSCCEEEECC---------------C-
T ss_pred HHHHHHHHhHHHHHHHHHH-------CCcCCCCeeC---HhHc---------CcCCcEEEEECCC--C-CCCCEEEECh-
Confidence 9999999999988888876 6999999872 2111 4899999999885 3 5899999999
Q ss_pred hhhhcC----CCCeEEEecccCCCeEEEE--E--EECCeEE-EEEeecCCCcchhhhhccCcccccCCcccCCCCCcccc
Q 047754 167 EGLEVL----EAPILLQEFVNHGGIIFKV--Y--VAGSSVK-CVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEV 237 (330)
Q Consensus 167 ~~L~~l----~~p~vvQefI~h~g~~~Kv--~--ViG~~v~-~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~ 237 (330)
++|... +.++++||||+ |..+.+ | ++-+++. ...+.-+.+ .+|.+....+ .+.-. ..+
T Consensus 147 eel~~~~~~~~~~~IiEEfI~--g~~~~~~~f~~~~~g~~e~~~~~~r~e~--------~~g~~~~p~~--~~~~~-~~G 213 (320)
T 2pbz_A 147 SELEERLSTLEEPYRVERFIP--GVYLYVHFFYSPILERLELLGVDERVLI--------ADGNARWPVK--PLPYT-IVG 213 (320)
T ss_dssp EECSCCCC----CCEEEECCC--SCEEEEEEEEETTTTEEEEEEEEEEEET--------TCSSSSSCCS--CCCCC-EEE
T ss_pred HHHHHHHHhcCCCEEEEeeec--eEecceeEEeccccCceeEEEecceEEE--------ECCeeecccC--CCcee-eec
Confidence 999754 25899999997 554431 1 0222222 111111111 1111111000 00000 001
Q ss_pred ccccCCCC--chHHHHHHHHHHHHHh------CCc-EEEEEEEEeCCCCCeeEEEEeeC-CCC
Q 047754 238 DLEKTEMP--REGFVVELSRALREAL------GLN-LFNFDLIRDAGERDGYLVIDINY-LPG 290 (330)
Q Consensus 238 ~~~~~~~~--~~~~~~~lA~~~~~~L------Gl~-l~GvDvi~~~~~g~~~~ViEVN~-fPg 290 (330)
.. +..+. ..+++.++|.++.++| |+. .+++| + +. +++ ++|+|||. |+|
T Consensus 214 ~~-P~~~~~~~~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE-~-~~-dg~-~~v~EIapR~~G 271 (320)
T 2pbz_A 214 NR-AIALRESLLPQLYDYGLAFVRTMRELEPPGVIGPFALH-F-AY-DGS-FKAIGIASRIDG 271 (320)
T ss_dssp EE-ECEECGGGHHHHHHHHHHHHHHHHHHSTTCCCSEEEEE-E-EC-SSS-CEEEEEESSBCS
T ss_pred CC-CCccCHHHHHHHHHHHHHHHHHHHhhccCCceeeEEEE-E-cC-CCc-EEEEEecCCCCC
Confidence 10 11111 2467889999999998 655 88999 4 32 343 79999999 465
No 68
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=99.03 E-value=1e-08 Score=98.90 Aligned_cols=224 Identities=13% Similarity=0.139 Sum_probs=129.1
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCC---cCCCccEEE-Ec-cCC---hh-----------------HHH--HHHHHHHhCC
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLT---EQGPFDCIM-HK-LYG---PD-----------------WTQ--QLQQFSSRNP 79 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~---~q~~~Dvil-hK-~~~---~~-----------------~~~--~l~~~~~~~p 79 (330)
..++.+|+++|+++..+|.+.+-. .....|-.+ .- ..+ .. +.. .+... .+.-
T Consensus 30 ~~l~~aAk~lG~~vi~vd~~~~~p~~~~~~~ad~~~~~d~~~d~~~~~~l~~l~~~~~vV~pe~~~v~~~gl~~l-~~~~ 108 (361)
T 2r7k_A 30 LHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVDNFSDIKNEEIQEKLRELNSIVVPHGSFIAYCGLDNV-ENSF 108 (361)
T ss_dssp HHHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEEECSSGGGGGSHHHHHHHHHTTEEECCBHHHHHHHCHHHH-HHTC
T ss_pred HHHHHHHHHCCCEEEEEECCCCCCcccccccCceEEECCCcccccHHHHHHHHHHcCCEEEeCchhhhHHHHHHH-HHHc
Confidence 448899999999999999884321 111123222 22 112 11 111 11122 2235
Q ss_pred CceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcc
Q 047754 80 DVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQ 159 (330)
Q Consensus 80 ~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 159 (330)
|+++.-+..+++...||..+-++|.+ +|||+|++ +.+. ..++||+|+||..++ +++|
T Consensus 109 g~~v~g~~~a~~~e~~k~~~k~~l~~-------~GIptp~~--~~~~-----------~e~~~PvVVK~~~~a---~GkG 165 (361)
T 2r7k_A 109 LVPMFGNRRILRWESERSLEGKLLRE-------AGLRVPKK--YESP-----------EDIDGTVIVKFPGAR---GGRG 165 (361)
T ss_dssp CSCBBSCGGGGGTTTCHHHHHHHHHH-------TTCCCCCE--ESSG-----------GGCCSCEEEECSCCC---C---
T ss_pred CCCcCCCHHHHHHhhhHHHHHHHHHH-------cCcCCCCE--eCCH-----------HHcCCCEEEeeCCCC---CCCC
Confidence 78888888888889999888888876 79999986 3332 223689999988743 5799
Q ss_pred eEEEeChhhhhcC------------C--CCeEEEecccCCCeEEEE---E-EECCeEE--EEEee--cCCC----cchhh
Q 047754 160 MYLIFDNEGLEVL------------E--APILLQEFVNHGGIIFKV---Y-VAGSSVK--CVKRK--SLPD----ISEEK 213 (330)
Q Consensus 160 m~iv~~~~~L~~l------------~--~p~vvQefI~h~g~~~Kv---~-ViG~~v~--~~~R~--S~~~----~~~~~ 213 (330)
+.++.+.+++.+. . .++++||||+ |..+.+ | ++++++. .+-++ +-.+ +...+
T Consensus 166 v~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~--G~e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~~~ 243 (361)
T 2r7k_A 166 YFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV--GTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAKD 243 (361)
T ss_dssp EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC--SEEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHHH
T ss_pred EEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc--eEEeeEEEEecccCCeeEEEEecceEEeecccceecchhh
Confidence 9999999887642 1 4799999996 666541 1 1244322 12222 1000 00000
Q ss_pred -hhccCcccccCCcccCCCCCccccccccCCCC--chHHHHHHHHHHHHHh------CC-cEEEEEEEEeCCCCCeeEEE
Q 047754 214 -MKSLKGFLPFSQISSNSVDADEEVDLEKTEMP--REGFVVELSRALREAL------GL-NLFNFDLIRDAGERDGYLVI 283 (330)
Q Consensus 214 -~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~lA~~~~~~L------Gl-~l~GvDvi~~~~~g~~~~Vi 283 (330)
+....++ .|. ..++ .+..++ ..+++.++|.++.++| |+ ..++++++++. +|+ ++|+
T Consensus 244 ~~~~~~~p-~~v----------~~G~-~Pa~l~~~~~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~-dg~-i~V~ 309 (361)
T 2r7k_A 244 QLEMNINP-SYV----------ITGN-IPVVIRESLLPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNE-NLE-LVVF 309 (361)
T ss_dssp HHTCCCCC-CEE----------EEEE-EECCCCGGGHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECT-TSC-EEEE
T ss_pred hhcccCCC-ceE----------EecC-cCCcCCHHHHHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcC-CCC-EEEE
Confidence 0000000 000 0011 022222 2567889999999999 44 47889999874 443 7999
Q ss_pred EeeCCCC
Q 047754 284 DINYLPG 290 (330)
Q Consensus 284 EVN~fPg 290 (330)
|||.=||
T Consensus 310 EIapR~g 316 (361)
T 2r7k_A 310 EMSARVD 316 (361)
T ss_dssp EEESSBC
T ss_pred EEcCCCC
Confidence 9999444
No 69
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=98.77 E-value=2.4e-07 Score=89.54 Aligned_cols=154 Identities=14% Similarity=0.185 Sum_probs=94.3
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCCcCCCccEEEEccCChhHHHHHHHHHHhCCC-ceecChHHHHHHhcCHHHHHHHHHh
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRNPD-VRIIDPPESIERLHNRDSMLEVVSR 105 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~~q~~~DvilhK~~~~~~~~~l~~~~~~~p~-v~viDp~~ai~~~~dR~~~~~~L~~ 105 (330)
+...+..+++|. ...+..+ -..+|++..--....+ +++ ..+|| .-.||-......+..|..+...|.+
T Consensus 18 ~~V~~vL~~~g~-w~ev~~~-----~~~~dl~W~~~~~~p~-~~l----~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~ 86 (380)
T 3tig_A 18 AEVAKILLASGQ-WKRLKRD-----NPKFNLMLGERNRLPF-GRL----GHEPGLVQLVNYYRGADKLCRKASLVKLIKT 86 (380)
T ss_dssp HHHHHHHHHTTS-EEECCTT-----CSCCSEEECCSSSCCG-GGS----SCSTTCCCEESCCTTTHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-eEEeCCC-----CCceeEEEecCCCCCH-HHh----ccCCCcceEEeecCCcccccccHHHHHHHHH
Confidence 557788899996 3334333 2368888864322211 111 11244 4678888888899999999888865
Q ss_pred hhhhhcCCCccCCcEEEec-Cc------------------------hhh-hhhHHHHHhcCCCcEEEeeCCCCCCCCCcc
Q 047754 106 LKIELNKEKVSVPNQAVVS-ET------------------------ELV-TRDMAIEELKLRFPLIAKPLEANGSDKSHQ 159 (330)
Q Consensus 106 ~~~~~~~~~i~~P~~~~~~-~~------------------------~~~-~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~ 159 (330)
.... .+..=..|+|.++. .. ... .....-.+.+-+.++|+||..+ + .++|
T Consensus 87 ~~~~-~~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~--s-rG~G 162 (380)
T 3tig_A 87 SPEL-TETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSG--A-KGEG 162 (380)
T ss_dssp CHHH-HTTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC-------C
T ss_pred hhhc-ccccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCcc--C-CCCC
Confidence 2111 12234578887772 21 000 0011112246678999999874 4 7889
Q ss_pred eEEEeChhhhhcC----CCCeEEEecccC------CC--eEEEEEEEC
Q 047754 160 MYLIFDNEGLEVL----EAPILLQEFVNH------GG--IIFKVYVAG 195 (330)
Q Consensus 160 m~iv~~~~~L~~l----~~p~vvQefI~h------~g--~~~Kv~ViG 195 (330)
+.++.+.+++.++ ..++|+|+||.. +| .|+|+||+-
T Consensus 163 I~l~~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlv 210 (380)
T 3tig_A 163 ILISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLV 210 (380)
T ss_dssp CBCCSCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEE
T ss_pred EEEeCCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEE
Confidence 9999999888653 578999999975 44 488999984
No 70
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=98.54 E-value=1e-07 Score=86.10 Aligned_cols=93 Identities=13% Similarity=0.179 Sum_probs=72.2
Q ss_pred hcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCC--CCCCCcceEE-EeChhhh
Q 047754 93 LHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEAN--GSDKSHQMYL-IFDNEGL 169 (330)
Q Consensus 93 ~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~--Gs~~sh~m~i-v~~~~~L 169 (330)
.+||..+.++|++ +|||+|++.++.+.+.... . ...++||+|+||..++ |-..+.|+.+ +.+++++
T Consensus 19 ~l~k~~~k~ll~~-------~GIp~p~~~~~~~~~ea~~--~--a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el 87 (238)
T 1wr2_A 19 AMVEYEAKQVLKA-------YGLPVPEEKLAKTLDEALE--Y--AKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEEL 87 (238)
T ss_dssp EECHHHHHHHHHT-------TTCCCCCCEEESSHHHHHH--H--HHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHH
T ss_pred CCCHHHHHHHHHH-------cCcCCCCeEEeCCHHHHHH--H--HHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHH
Confidence 5799999999986 8999999999988765432 2 2568999999998751 1114567888 7999888
Q ss_pred hcC----------------CCCeEEEecccCCCeEEEEEEECCe
Q 047754 170 EVL----------------EAPILLQEFVNHGGIIFKVYVAGSS 197 (330)
Q Consensus 170 ~~l----------------~~p~vvQefI~h~g~~~Kv~ViG~~ 197 (330)
... ...+++|+||+ +|+.+-|.+++|.
T Consensus 88 ~~a~~~~~~~~~~~~~~~~~~~vlVEe~i~-~g~E~~v~v~~d~ 130 (238)
T 1wr2_A 88 KKKWEEIHENAKKYRPDAEILGVLVAPMLK-PGREVIIGVTEDP 130 (238)
T ss_dssp HHHHHHHHHHHHHHCTTCCCCEEEEEECCC-CCEEEEEEEEEET
T ss_pred HHHHHHHHHhhhhhCCCCccceEEEEECCC-CCeEEEEEEEeCC
Confidence 642 15799999997 4889999998876
No 71
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=97.93 E-value=2.6e-05 Score=75.87 Aligned_cols=91 Identities=18% Similarity=0.103 Sum_probs=69.3
Q ss_pred HHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCC-CCCCCCcceEEEeChhhhhcC---
Q 047754 97 DSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEA-NGSDKSHQMYLIFDNEGLEVL--- 172 (330)
Q Consensus 97 ~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a-~Gs~~sh~m~iv~~~~~L~~l--- 172 (330)
+.+.++|++ +|||+|++.++.+.++... .. ..++||+|+||... .|...+.||.++.+++++.+.
T Consensus 6 ~~aK~lL~~-------~GIpvp~~~~~~s~eea~~--aa--~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~ 74 (397)
T 3ufx_B 6 YQAKEILAR-------YGVPVPPGKVAYTPEEAKR--IA--EEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQA 74 (397)
T ss_dssp HHHHHHHHH-------TTCCCCCEEEESSHHHHHH--HH--HHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHH-------CCCCCCCeEEECCHHHHHH--HH--HHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHH
Confidence 455667775 8999999999998776643 23 56789999999872 233356799999999887642
Q ss_pred --C--------CCeEEEecccCCCeEEEEEEECCeEE
Q 047754 173 --E--------APILLQEFVNHGGIIFKVYVAGSSVK 199 (330)
Q Consensus 173 --~--------~p~vvQefI~h~g~~~Kv~ViG~~v~ 199 (330)
. ..+++|||+++ |+.+-+.++.|..+
T Consensus 75 ~~~~~~~g~~~~~vlVEe~v~~-g~El~vgv~~D~~~ 110 (397)
T 3ufx_B 75 ILGMNIKGLTVKKVLVAEAVDI-AKEYYAGLILDRAK 110 (397)
T ss_dssp HTTCEETTEECCCEEEEECCCE-EEEEEEEEEEETTT
T ss_pred hhhhhccCCccceEEEEEeecC-CeeEEEEEEecCCC
Confidence 1 47999999974 88999999988654
No 72
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=97.88 E-value=3.7e-05 Score=74.61 Aligned_cols=93 Identities=11% Similarity=0.074 Sum_probs=70.7
Q ss_pred cCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCc-EEEeeCCCC-CCCCCcceEEEeChhhhhc
Q 047754 94 HNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFP-LIAKPLEAN-GSDKSHQMYLIFDNEGLEV 171 (330)
Q Consensus 94 ~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP-~VvKp~~a~-Gs~~sh~m~iv~~~~~L~~ 171 (330)
++++.+-++|++ +|||+|++.++.+.+++.. .. ..++|| +|+||.... |-..+.|+.++.+++++.+
T Consensus 3 l~E~~aK~lL~~-------~GIpvp~~~~~~s~eea~~--aa--~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~ 71 (388)
T 2nu8_B 3 LHEYQAKQLFAR-------YGLPAPVGYACTTPREAEE--AA--SKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRA 71 (388)
T ss_dssp CCHHHHHHHHHH-------TTCCCCCEEEESSHHHHHH--HH--HHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHH
T ss_pred CCHHHHHHHHHH-------CCcCCCCeeEECCHHHHHH--HH--HHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHH
Confidence 356777788876 8999999999988766542 22 568999 999998742 2225679999999887753
Q ss_pred C-----C---------------CCeEEEecccCCCeEEEEEEECCeE
Q 047754 172 L-----E---------------APILLQEFVNHGGIIFKVYVAGSSV 198 (330)
Q Consensus 172 l-----~---------------~p~vvQefI~h~g~~~Kv~ViG~~v 198 (330)
. . .++++|+|+++ ++.+-+.++.|+.
T Consensus 72 a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~-~~E~~v~v~~D~~ 117 (388)
T 2nu8_B 72 FAENWLGKRLVTYQTDANGQPVNQILVEAATDI-AKELYLGAVVDRS 117 (388)
T ss_dssp HHHHHTTSEECCTTSCTTCEECCCEEEEECCCE-EEEEEEEEEEETT
T ss_pred HHHHHhhhhhhccccCCCCcccceEEEEEcccc-CCcEEEEEEEecc
Confidence 1 1 26999999974 7899999988865
No 73
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=97.72 E-value=8e-05 Score=72.41 Aligned_cols=92 Identities=15% Similarity=0.081 Sum_probs=67.6
Q ss_pred CHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCC-cEEEeeCCCCCC-CCC-------cceEEEeC
Q 047754 95 NRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRF-PLIAKPLEANGS-DKS-------HQMYLIFD 165 (330)
Q Consensus 95 dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~f-P~VvKp~~a~Gs-~~s-------h~m~iv~~ 165 (330)
+.+.+-++|++ +|||+|++.++.+.+++.. .. ..++| |+|+||...+|. ..+ -|+.++.+
T Consensus 4 ~E~~aK~lL~~-------~GIpvp~~~~~~s~~ea~~--~a--~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s 72 (395)
T 2fp4_B 4 QEYQSKKLMSD-------NGVKVQRFFVADTANEALE--AA--KRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKD 72 (395)
T ss_dssp CHHHHHHHHHH-------TTCCCCCEEEESSHHHHHH--HH--HHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESC
T ss_pred CHHHHHHHHHH-------CCcCCCCeEEECCHHHHHH--HH--HHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECC
Confidence 45566777875 8999999999988776543 23 56899 899999744433 111 46999999
Q ss_pred hhhhhcC-----C---------------CCeEEEecccCCCeEEEEEEECCeE
Q 047754 166 NEGLEVL-----E---------------APILLQEFVNHGGIIFKVYVAGSSV 198 (330)
Q Consensus 166 ~~~L~~l-----~---------------~p~vvQefI~h~g~~~Kv~ViG~~v 198 (330)
++++.+. . ..+++|+|++ .++.+-+.++.|+.
T Consensus 73 ~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~-~~~E~~v~i~~D~~ 124 (395)
T 2fp4_B 73 PEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALD-ISRETYLAILMDRS 124 (395)
T ss_dssp HHHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCC-CSEEEEEEEEEETT
T ss_pred HHHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccC-CceeEEEEEEEccc
Confidence 8887641 1 2599999997 48899998888864
No 74
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=97.03 E-value=0.0076 Score=61.69 Aligned_cols=158 Identities=14% Similarity=0.164 Sum_probs=98.4
Q ss_pred cchHHHHHHHHCCCeEEEeC-CCCCCC--cCC--------CccEEEEccCChhHH-HH----------------------
Q 047754 25 IQPSLITKATEQGIGLIRID-PDKPLT--EQG--------PFDCIMHKLYGPDWT-QQ---------------------- 70 (330)
Q Consensus 25 ~~~~l~~~~~~~Gi~~~~id-~~~~l~--~q~--------~~DvilhK~~~~~~~-~~---------------------- 70 (330)
...-|.+.|++.|++...++ ++ .+. ..| ++|.++ |+..-+|+ ..
T Consensus 395 t~~~L~~~a~eaG~~~~~~~~i~-dl~~~~~G~l~d~dg~~I~~lf-klypwE~m~~~~~~~~~~~~~~~~~~~g~~~~g 472 (619)
T 2io8_A 395 HAQFMEQALHQAGFETRILRGLD-ELGWDAAGQLIDGEGRLVNCVW-KTWAWETAFDQIREVSDREFAAVPIRTGHPQNE 472 (619)
T ss_dssp HHHHHHHHHHHTTCEEEEEESST-TCEECSSSCEECTTSCBCCEEE-ESSCHHHHHHHHHHC---CCSSCCCCSCCSSCC
T ss_pred HHHHHHHHHHHCCCceEEecchH-hEEECCCCcEECCCCCEeeeEE-ecCCHHHHHHHhhhhcccccccccccccCccch
Confidence 34558899999999999998 77 332 122 344444 34432322 22
Q ss_pred --HHHHHHhCCCceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEee
Q 047754 71 --LQQFSSRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKP 148 (330)
Q Consensus 71 --l~~~~~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp 148 (330)
+.+.+ +..++.+|+|+.++. +.||..+.- |.++- + .+. -.++|.+ +.... +... ..|.||
T Consensus 473 ~~ll~~l-~~~~v~iieP~~~~l-lsNKailal-Lw~l~--p-~hp-~LLpT~f-~~~~~------l~~~----~yV~KP 534 (619)
T 2io8_A 473 VRLIDVL-LRPEVLVFEPLWTVI-PGNKAILPI-LWSLF--P-HHR-YLLDTDF-TVNDE------LVKT----GYAVKP 534 (619)
T ss_dssp CCHHHHH-TCTTCEEESCGGGGT-TTSTTHHHH-HHHHS--T-TCT-TCCCEES-SCCHH------HHHH----CEEEEE
T ss_pred HHHHHHH-HhCCCEEECHHHHHH-hhhHHHHHH-HHHhC--C-CCC-CCCCeee-cCCcc------cccC----CEEEcc
Confidence 22333 346899999999977 999976654 44321 0 111 2335542 22111 1112 499999
Q ss_pred CCCCCCCCCcceEEEeC-hhhhhc----C-CCCeEEEecccCCCeE-----EEEEEECCeEEE-EEeec
Q 047754 149 LEANGSDKSHQMYLIFD-NEGLEV----L-EAPILLQEFVNHGGII-----FKVYVAGSSVKC-VKRKS 205 (330)
Q Consensus 149 ~~a~Gs~~sh~m~iv~~-~~~L~~----l-~~p~vvQefI~h~g~~-----~Kv~ViG~~v~~-~~R~S 205 (330)
+.+ . ++.+|.++.. .+.+.+ + +.++|.|+|++-+..+ +-+|++||+... ..|.+
T Consensus 535 i~g--R-eG~nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R~~ 600 (619)
T 2io8_A 535 IAG--R-CGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_dssp TTC--C-TTTTCEEECTTSCEEEECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCC--C-CCCCEEEEeCCChhHhhccccccCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEEEecC
Confidence 995 3 6678999876 222222 2 4689999999987666 899999999884 55775
No 75
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=91.97 E-value=1.6 Score=44.82 Aligned_cols=156 Identities=9% Similarity=0.027 Sum_probs=81.3
Q ss_pred hHHHHHHHHCCCeEEEeC-CCCCCC--cC--------CCccEEEEccCChhHHHHH----------------------HH
Q 047754 27 PSLITKATEQGIGLIRID-PDKPLT--EQ--------GPFDCIMHKLYGPDWTQQL----------------------QQ 73 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id-~~~~l~--~q--------~~~DvilhK~~~~~~~~~l----------------------~~ 73 (330)
.-|.+.|++.|++...++ ++ ++. +. .++|+++ |+..-+|+..- .+
T Consensus 413 ~yL~~~a~eaG~~t~~~~~i~-dL~~~~~G~l~D~~g~~Id~lf-KLyPwE~m~~~~~~~~~~~~~~~~g~p~~g~~~~~ 490 (652)
T 2vob_A 413 LYCMQAAEAVGLEGKLCILFD-EFRFDDNGHVVDSDGVRVRNVW-KTWMWESAITDYYAAREERGENWKPSPKDKVRLCD 490 (652)
T ss_dssp HHHHHHHHHTTCEEEEEETTT-TCEECTTSCEECTTSCBCCEEE-ECSCHHHHHHHHHHHHHHHCSSCCCCTTSBCCHHH
T ss_pred HHHHHHHHHCCCcEEEecchh-heEECCCCcEECCCCcEeeEEE-ecCCHHHHHHhhhhcccccccccccCccchhHHHH
Confidence 447888999999999997 66 442 11 2556655 35544433211 12
Q ss_pred HHHhCC--CceecChHHHHHHhcCHHHHHHHHHhhhhhhcCCCccCCcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCC
Q 047754 74 FSSRNP--DVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEA 151 (330)
Q Consensus 74 ~~~~~p--~v~viDp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a 151 (330)
.+ +.. .+.+|+|+-+ ..+.||.. +.+|.++-. .+.- .+++. ++.... +... ..|.||..+
T Consensus 491 ~l-~~~~~~v~~ieP~wk-~LlsNKai-LalLW~l~p---~hp~-LLpt~-f~~~~~------~~~~----~yV~KPi~g 552 (652)
T 2vob_A 491 LL-LGDDWEILYFEPMWK-VIPSNKAI-LPMIYHNHP---EHPA-ILKAE-YELTDE------LRKH----GYAKKPIVG 552 (652)
T ss_dssp HH-SSSCTTSEEESCGGG-GTTTSTTH-HHHHHHHCT---TCTT-BCCEE-SSCCHH------HHHH----CEEEEECC-
T ss_pred HH-hcCCCceEEeChhHH-HhhcCHHH-HHHHHhccc---CCCC-CCchh-hcCCCc------cccC----CeEeccCCC
Confidence 22 235 7999999955 46788844 355654311 1222 23333 222111 1112 499999995
Q ss_pred CCCCCCcceEEEeChhh-hhc----C-CCCeEEEecccC-----CCeEEEEEEECCeEE-EEEeec
Q 047754 152 NGSDKSHQMYLIFDNEG-LEV----L-EAPILLQEFVNH-----GGIIFKVYVAGSSVK-CVKRKS 205 (330)
Q Consensus 152 ~Gs~~sh~m~iv~~~~~-L~~----l-~~p~vvQefI~h-----~g~~~Kv~ViG~~v~-~~~R~S 205 (330)
- ++.+|.|.....+ ... + +.++|+|||++- .-..+-+|++||+.. +..|.+
T Consensus 553 R---eG~nV~I~~~~~~~~~~~~g~y~~~~~IyQe~~~lp~f~~~~~~iG~~lvg~~~aGi~iR~~ 615 (652)
T 2vob_A 553 R---VGSNVIITSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDAFSGTGIRED 615 (652)
T ss_dssp -----------------------------CEEEEECCC--CBTTBCCEEEEEEETTEEEEEEEEC-
T ss_pred C---CCCCEEEEcCCchhhhhcccccCCCCeEEEecccCCccCCcceEEEEEEECCEEEEEEEecC
Confidence 3 5668888754222 111 1 569999999984 234678999999988 455775
No 76
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=91.96 E-value=0.16 Score=50.32 Aligned_cols=133 Identities=15% Similarity=0.194 Sum_probs=71.8
Q ss_pred CccEEEEccCChh------------H-HHHHHHHHHhCCCceecChHHHHHHhcCHHHHHHHHHhhh-h-hhcCCCc-cC
Q 047754 54 PFDCIMHKLYGPD------------W-TQQLQQFSSRNPDVRIIDPPESIERLHNRDSMLEVVSRLK-I-ELNKEKV-SV 117 (330)
Q Consensus 54 ~~DvilhK~~~~~------------~-~~~l~~~~~~~p~v~viDp~~ai~~~~dR~~~~~~L~~~~-~-~~~~~~i-~~ 117 (330)
++|+|+-|+.+.. . -..++.|.+ ..|.++|++-+- .+.||..+ ..|.++. . .....-+ .+
T Consensus 269 ~VDVIyRRvdd~~lDpl~~~~dS~lGv~gLl~A~r~--G~V~i~Na~gsg-v~~dKal~-a~Lp~l~~~~lgEe~il~~V 344 (474)
T 3n6x_A 269 RVDVIYRRIDDDFIDPLSFRPDSMLGVPGLLSVYRN--GGVTLANAVGTG-VADDKDTY-IYVPEMIRFYLGEEPILSNV 344 (474)
T ss_dssp EECEEEECSCGGGSCTTTSCTTCSSSCTTHHHHHHT--TSCEEESCTTTH-HHHSTTTG-GGHHHHHHHHHCSCCSSEEC
T ss_pred EEEEEEEcCCHHhcCccccCCCcccccHHHHHHHHc--CCEEEeCCCchh-hhcCcHHH-HHhHHHHHHhCCHhhhccCC
Confidence 7999999986531 1 135555544 479999999884 88888522 2222211 0 0011122 23
Q ss_pred CcEEEecCchhhhhhHHHHHhcCCCcEEEeeCCCCCCCCCcceEEE--eChhhhhcC-----CCC--eEEEecccC----
Q 047754 118 PNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLI--FDNEGLEVL-----EAP--ILLQEFVNH---- 184 (330)
Q Consensus 118 P~~~~~~~~~~~~~~~~l~~~~l~fP~VvKp~~a~Gs~~sh~m~iv--~~~~~L~~l-----~~p--~vvQefI~h---- 184 (330)
|.+. ..+.++... .+ +++. -+|+||..+. ++.+|.+= .+.++.+++ ..| +|+||+|.-
T Consensus 345 pT~~-c~~~~~~~~--vl--~~l~-~lViKp~~g~---gg~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P 415 (474)
T 3n6x_A 345 PTYQ-LSKADDLKY--VL--DNLA-ELVVKEVQGS---GGYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALSTCP 415 (474)
T ss_dssp CCEE-TTSHHHHHH--HH--HSGG-GEEEEECCCE--------EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEE
T ss_pred Ccee-cCCHHHHHH--HH--hchh-heEEEecCCC---CCCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccc
Confidence 4333 333333321 23 2222 5999999864 35677652 234444442 457 999999973
Q ss_pred ---CC------eEEEEEEE-CCeEE
Q 047754 185 ---GG------IIFKVYVA-GSSVK 199 (330)
Q Consensus 185 ---~g------~~~Kv~Vi-G~~v~ 199 (330)
+| .++|+|++ |+.+.
T Consensus 416 ~~~~~~~~~r~~dlR~F~~~g~~~~ 440 (474)
T 3n6x_A 416 TLVETGIAPRHVDLRPFVLSGKTVS 440 (474)
T ss_dssp EEETTEEEEEEEEEECEEEESSSEE
T ss_pred eeeCCceeeeeEEEEEEEEcCCceE
Confidence 22 57888888 55443
No 77
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=90.20 E-value=0.86 Score=44.37 Aligned_cols=83 Identities=18% Similarity=0.139 Sum_probs=56.9
Q ss_pred ccCCcEEEecCchhhhhhHHHHHhcCC-CcEEEeeCCC-CCCCCCcceEEEeChhhhhcC----------C-------CC
Q 047754 115 VSVPNQAVVSETELVTRDMAIEELKLR-FPLIAKPLEA-NGSDKSHQMYLIFDNEGLEVL----------E-------AP 175 (330)
Q Consensus 115 i~~P~~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a-~Gs~~sh~m~iv~~~~~L~~l----------~-------~p 175 (330)
+..|++.+++++.+.+.... ....++ ||+|+|+... .|-..+.|+.+..+.++..+. . .-
T Consensus 26 ~~~~~~~~~~~~~~~~eA~~-~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~ml~~~~~~~~~~~~v~~ 104 (425)
T 3mwd_A 26 QNRFKYARVTPDTDWARLLQ-DHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKN 104 (425)
T ss_dssp CSTTCCEEECTTCCHHHHHH-HCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCC
T ss_pred cCCcceEEeCCCCCHHHHHH-HHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHHHHhhhhhccCCCceEEE
Confidence 45566888887755544222 235677 9999999773 234456789999998777642 0 13
Q ss_pred eEEEecccCC-CeEEEEEEECCeE
Q 047754 176 ILLQEFVNHG-GIIFKVYVAGSSV 198 (330)
Q Consensus 176 ~vvQefI~h~-g~~~Kv~ViG~~v 198 (330)
+++|++++|+ ++.|-+-+.-|+.
T Consensus 105 vlVe~~~~~~~~~E~ylgi~~Dr~ 128 (425)
T 3mwd_A 105 FLIEPFVPHSQAEEFYVCIYATRE 128 (425)
T ss_dssp EEEEECCCCCGGGEEEEEEEEETT
T ss_pred EEEEecccCCCCceEEEEEEecCC
Confidence 8999999985 7888777776654
No 78
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=80.99 E-value=2.6 Score=44.39 Aligned_cols=81 Identities=19% Similarity=0.111 Sum_probs=55.0
Q ss_pred CCcEEEecCchhhhhhHHHHHhcCC-CcEEEeeCCCC-CCCCCcceEEEeChhhhhcC---------C--------CCeE
Q 047754 117 VPNQAVVSETELVTRDMAIEELKLR-FPLIAKPLEAN-GSDKSHQMYLIFDNEGLEVL---------E--------APIL 177 (330)
Q Consensus 117 ~P~~~~~~~~~~~~~~~~l~~~~l~-fP~VvKp~~a~-Gs~~sh~m~iv~~~~~L~~l---------~--------~p~v 177 (330)
.|++.++.+.++.+..... ...++ +|+|+|+.... |-..+-|+.+..+.++.++. . .-++
T Consensus 28 ~~~~~~v~~~~~~~eA~~a-a~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa~~iLg~~~~~~~p~~~V~gvL 106 (829)
T 3pff_A 28 RFKYARVTPDTDWARLLQD-HPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFL 106 (829)
T ss_dssp TTCCEEECTTCCHHHHHHH-CTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEE
T ss_pred CCceEEeCCCCCHHHHHHH-HHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHHHHHHHHHHHhhcCCCceEEEEE
Confidence 6678888777555432122 24465 99999997643 33455688898998777642 1 1389
Q ss_pred EEecccCC-CeEEEEEEECCeE
Q 047754 178 LQEFVNHG-GIIFKVYVAGSSV 198 (330)
Q Consensus 178 vQefI~h~-g~~~Kv~ViG~~v 198 (330)
+|++++++ +++|-+-+.-|+.
T Consensus 107 VE~m~~~~~~~ElYvgI~~Dr~ 128 (829)
T 3pff_A 107 IEPFVPHSQAEEFYVCIYATRE 128 (829)
T ss_dssp EEECCCCCGGGEEEEEEEEETT
T ss_pred EEecccCCCccEEEEEEEecCC
Confidence 99999985 7888777776654
No 79
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=56.43 E-value=43 Score=25.84 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=50.4
Q ss_pred cccCcchHHHHHHHHCCCeEEEeC--CCCCCCcCCCccEEEEccCChhHHHHHHHHHHhC-CCceecChHHHHHHhcCHH
Q 047754 21 EQTVIQPSLITKATEQGIGLIRID--PDKPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRN-PDVRIIDPPESIERLHNRD 97 (330)
Q Consensus 21 ~~~~~~~~l~~~~~~~Gi~~~~id--~~~~l~~q~~~DvilhK~~~~~~~~~l~~~~~~~-p~v~viDp~~ai~~~~dR~ 97 (330)
-.++..+++.++|+++|+++...- ...--.....+|++|.=..-......+++...++ -.+.+||+-+-....+|=-
T Consensus 18 STsllv~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~ipV~vI~~~~Yg~~~~~g~ 97 (108)
T 3nbm_A 18 TSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPS 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTCEEEECCHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEEChHHHHHHHHHHHHhhhcCCcEEEeCHHHhhhhhCCHH
Confidence 345666788899999999877743 3321112346899996333222335555555432 2478899987765566665
Q ss_pred HHHHHH
Q 047754 98 SMLEVV 103 (330)
Q Consensus 98 ~~~~~L 103 (330)
..++..
T Consensus 98 ~vl~~~ 103 (108)
T 3nbm_A 98 KALQFV 103 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 80
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=50.35 E-value=44 Score=31.18 Aligned_cols=72 Identities=18% Similarity=0.306 Sum_probs=50.8
Q ss_pred CCceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHH
Q 047754 7 QPYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQ 73 (330)
Q Consensus 7 ~~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~ 73 (330)
-++.+|+..|.+ |-+-+. +|..++.++|-++..+++...-...| =+|+|..|-..+.....+.+
T Consensus 42 L~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~ 118 (333)
T 1duv_G 42 LTGKNIALIFEKDSTRTRC---SFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAE 118 (333)
T ss_dssp CTTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECSCHHHHHHHHH
T ss_pred cCCCEEEEEecCCCccHHH---HHHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcCCchHHHHHHH
Confidence 356778777754 555553 58888999999999999874222221 27999999887665555555
Q ss_pred HHHhCCCceecC
Q 047754 74 FSSRNPDVRIID 85 (330)
Q Consensus 74 ~~~~~p~v~viD 85 (330)
|. +++|||
T Consensus 119 ~~----~vPVIN 126 (333)
T 1duv_G 119 YA----SVPVWN 126 (333)
T ss_dssp HH----SSCEEE
T ss_pred hC----CCCeEc
Confidence 54 699999
No 81
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=47.85 E-value=53 Score=30.70 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=49.4
Q ss_pred CCceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCCC------------ccEEEEccCChhHHHHHHH
Q 047754 7 QPYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGP------------FDCIMHKLYGPDWTQQLQQ 73 (330)
Q Consensus 7 ~~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~------------~DvilhK~~~~~~~~~l~~ 73 (330)
-++.+|+..|.+ |-|-+. +|..++.++|-+++.++++..-...|+ +|+|+.|-..+.....+.+
T Consensus 61 L~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ssl~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~ 137 (339)
T 4a8t_A 61 LKNKSLGMIFQQSSTRTRV---SFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLAN 137 (339)
T ss_dssp TTTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEECCC-CCSSSSSCHHHHHHHHHHHCSEEEEECSSHHHHHHHHH
T ss_pred cCCceEEEEecCCCchHHH---HHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcHHHHHHHHH
Confidence 356677777654 555553 588889999999999998743222222 7999999876554444433
Q ss_pred HHHhCCCceecCh
Q 047754 74 FSSRNPDVRIIDP 86 (330)
Q Consensus 74 ~~~~~p~v~viDp 86 (330)
+.+++|||=
T Consensus 138 ----~~~vPVINa 146 (339)
T 4a8t_A 138 ----CATIPVING 146 (339)
T ss_dssp ----HCSSCEEEC
T ss_pred ----hCCCCEEEC
Confidence 457999984
No 82
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=45.19 E-value=70 Score=29.65 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=50.2
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~~ 74 (330)
++.+|+..|.+ |-|-+ -+|..++.++|-+++.++++..-...| =+|+|+.|-..+.....+.+|
T Consensus 57 ~gk~la~lF~epSTRTR---~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~~~~~~lA~~ 133 (325)
T 1vlv_A 57 KGMTLAMIFEKRSTRTR---LAFETAFAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYKQETVEKLAEY 133 (325)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHTTCSEEEEESSCHHHHHHHHHH
T ss_pred CCCEEEEEeccCCcchH---HHHHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHhCCEEEEECCChHHHHHHHHh
Confidence 56778777754 44555 358888999999999999874322222 269999998876655555555
Q ss_pred HHhCCCceecC
Q 047754 75 SSRNPDVRIID 85 (330)
Q Consensus 75 ~~~~p~v~viD 85 (330)
. +++|||
T Consensus 134 ~----~vPVIN 140 (325)
T 1vlv_A 134 S----GVPVYN 140 (325)
T ss_dssp H----CSCEEE
T ss_pred C----CCCEEe
Confidence 4 699999
No 83
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=43.75 E-value=58 Score=30.70 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=50.1
Q ss_pred CCceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCCC------------ccEEEEccCChhHHHHHHH
Q 047754 7 QPYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGP------------FDCIMHKLYGPDWTQQLQQ 73 (330)
Q Consensus 7 ~~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~------------~DvilhK~~~~~~~~~l~~ 73 (330)
-++.+|+..|.+ |-+-+ -+|..++.++|-+++.+++...-...|+ +|+|..|-..+.....+.+
T Consensus 65 L~Gk~la~lF~e~STRTR---~SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~ 141 (359)
T 2w37_A 65 LEGKNIALLFEKSSTRTR---SAFTTASIDLGAHPEYLGQNDIQLGKKESTSDTAKVLGSMFDGIEFRGFKQSDAEILAR 141 (359)
T ss_dssp TTTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHHCSEEEEESSCHHHHHHHHH
T ss_pred cCCCEEEEEecCCCccHH---HHHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHhcCEEEEecCChHHHHHHHH
Confidence 356778877754 44444 3588889999999999998753222222 6999999876655444444
Q ss_pred HHHhCCCceecC
Q 047754 74 FSSRNPDVRIID 85 (330)
Q Consensus 74 ~~~~~p~v~viD 85 (330)
| .+++|||
T Consensus 142 ~----s~vPVIN 149 (359)
T 2w37_A 142 D----SGVPVWN 149 (359)
T ss_dssp H----SSSCEEE
T ss_pred h----CCCCEEc
Confidence 3 5799999
No 84
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=42.99 E-value=57 Score=30.41 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=49.7
Q ss_pred CCceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCCC------------ccEEEEccCChhHHHHHHH
Q 047754 7 QPYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGP------------FDCIMHKLYGPDWTQQLQQ 73 (330)
Q Consensus 7 ~~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~------------~DvilhK~~~~~~~~~l~~ 73 (330)
-++.+|+..|.+ |-|-+ -+|..++.++|-++..++++..-...|+ +|+|..|-..+.....+.+
T Consensus 43 L~gk~la~lF~e~STRTR---~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~ 119 (335)
T 1dxh_A 43 LKRKNIALIFEKTSTRTR---CAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAK 119 (335)
T ss_dssp CTTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEECTTTCCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEEecCCCcchH---HHHHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHhhCCEEEEecCChhHHHHHHH
Confidence 356778777754 44544 3588889999999999998753222222 6999999876654444444
Q ss_pred HHHhCCCceecC
Q 047754 74 FSSRNPDVRIID 85 (330)
Q Consensus 74 ~~~~~p~v~viD 85 (330)
+.+++|||
T Consensus 120 ----~s~vPVIN 127 (335)
T 1dxh_A 120 ----FAGVPVFN 127 (335)
T ss_dssp ----HSSSCEEE
T ss_pred ----hCCCCEEc
Confidence 45799999
No 85
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=42.61 E-value=63 Score=29.73 Aligned_cols=71 Identities=13% Similarity=0.190 Sum_probs=47.6
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCCC------------ccEEEEccCChhHHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGP------------FDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~------------~DvilhK~~~~~~~~~l~~~ 74 (330)
++.+|+..|.+ |-+-+ -+|..++.++|-++..++++..-...|+ +|+|+.|-..+.....+.
T Consensus 35 ~gk~la~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA-- 109 (307)
T 3tpf_A 35 QDKTLAMIFEKNSTRTR---MAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHETLLEFA-- 109 (307)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHHSSEEEEECSCHHHHHHHH--
T ss_pred CCCEEEEEecCCCcchH---HhHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChHHHHHHH--
Confidence 34567766654 44544 3588889999999999998742222222 699999987665444333
Q ss_pred HHhCCCceecC
Q 047754 75 SSRNPDVRIID 85 (330)
Q Consensus 75 ~~~~p~v~viD 85 (330)
++.+++|||
T Consensus 110 --~~~~vPVIN 118 (307)
T 3tpf_A 110 --RYSKAPVIN 118 (307)
T ss_dssp --HHCSSCEEE
T ss_pred --HhCCCCEEe
Confidence 345799998
No 86
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=42.46 E-value=56 Score=30.74 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=49.4
Q ss_pred CCceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHH
Q 047754 7 QPYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQ 73 (330)
Q Consensus 7 ~~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~ 73 (330)
-++.+|+..|.+ |-+-+. +|..++.++|-+++.++++..-...| =+|+|+.|-..+.....+.+
T Consensus 39 L~gK~la~lF~epSTRTR~---SFE~A~~~LGg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~~~~~~~~lA~ 115 (355)
T 4a8p_A 39 LKNKSLGMIFQQSSTRTRV---SFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLAN 115 (355)
T ss_dssp TTTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECSSHHHHHHHHH
T ss_pred cCCCEEEEEecCCChhhHh---hHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcHHHHHHHHH
Confidence 456677776654 555553 58888999999999999864211111 27999999876554444433
Q ss_pred HHHhCCCceecCh
Q 047754 74 FSSRNPDVRIIDP 86 (330)
Q Consensus 74 ~~~~~p~v~viDp 86 (330)
+.+++|||=
T Consensus 116 ----~~~vPVINa 124 (355)
T 4a8p_A 116 ----CATIPVING 124 (355)
T ss_dssp ----HCSSCEEEC
T ss_pred ----hCCCCEEeC
Confidence 457999984
No 87
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=40.91 E-value=59 Score=30.18 Aligned_cols=71 Identities=14% Similarity=0.261 Sum_probs=44.6
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~~ 74 (330)
++..|+..|.+ |-|-+ -+|..++.+.|-+++.++++..-...| =+|+|+.|-..+.....+.+|
T Consensus 47 ~gk~la~lF~e~STRTR---~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~~~~~~lA~~ 123 (323)
T 3gd5_A 47 HGKVLGLVFLKASTRTR---VSFTVAMYQLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQTELEEYAHY 123 (323)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEC----------CCHHHHHHHHTTTCSEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcchH---hhHHHHHHHcCCeEEEeCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHHHh
Confidence 45677776654 44444 358888999999999998864211111 279999998876555555554
Q ss_pred HHhCCCceecC
Q 047754 75 SSRNPDVRIID 85 (330)
Q Consensus 75 ~~~~p~v~viD 85 (330)
.+++|||
T Consensus 124 ----~~vPVIN 130 (323)
T 3gd5_A 124 ----AGIPVIN 130 (323)
T ss_dssp ----HCSCEEE
T ss_pred ----CCCCEEe
Confidence 4799998
No 88
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=40.28 E-value=24 Score=27.06 Aligned_cols=67 Identities=9% Similarity=0.033 Sum_probs=38.5
Q ss_pred cCcchHHHHHHHHCCCeE--EEeCCCCCCCcCCCccEEEEccCChhHHHHHHHHHHhCCCceecChHHHH
Q 047754 23 TVIQPSLITKATEQGIGL--IRIDPDKPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRIIDPPESI 90 (330)
Q Consensus 23 ~~~~~~l~~~~~~~Gi~~--~~id~~~~l~~q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~viDp~~ai 90 (330)
++..+.+.++++++|+++ ...+...--.....+|+++.=..-......+++..... +++|||+.+-.
T Consensus 17 S~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~~~Dvil~~pqv~~~~~~~~~~~~~~-~v~vI~~~~yg 85 (106)
T 1e2b_A 17 SLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNK-PVEVIDSLLYG 85 (106)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEEECTTSGGGHHHHHHHSSSS-CCCBCCHHHHT
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecHHHHHhhccCCCEEEEccchhhhHHHHHHHhcCC-CceEECHHHcc
Confidence 355567889999999864 33344421111246899984332222234444433333 59999977664
No 89
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=40.02 E-value=58 Score=30.19 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=49.9
Q ss_pred CCceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCCC------------ccEEEEccCChhHHHHHHH
Q 047754 7 QPYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGP------------FDCIMHKLYGPDWTQQLQQ 73 (330)
Q Consensus 7 ~~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~------------~DvilhK~~~~~~~~~l~~ 73 (330)
-++.+++..|.+ |-+-+. +|..++.++|-+++.++....-...|+ +|+|+.|-..+.....+.
T Consensus 44 L~gk~l~~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA- 119 (321)
T 1oth_A 44 LQGKSLGMIFEKRSTRTRL---STETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQSDLDTLA- 119 (321)
T ss_dssp TTTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEEETTTSCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHH-
T ss_pred CCCCEEEEEecCCCcchHH---HHHHHHHHcCCeEEEECCCcCcCCCCCCHHHHHHHHHHhCCEEEEeCCChhHHHHHH-
Confidence 356777777654 555553 588889999999999998753222222 699999987665444443
Q ss_pred HHHhCCCceecC
Q 047754 74 FSSRNPDVRIID 85 (330)
Q Consensus 74 ~~~~~p~v~viD 85 (330)
++.+++|||
T Consensus 120 ---~~~~vPVIN 128 (321)
T 1oth_A 120 ---KEASIPIIN 128 (321)
T ss_dssp ---HHCSSCEEE
T ss_pred ---HhCCCCEEc
Confidence 445799999
No 90
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=37.95 E-value=69 Score=30.09 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=49.3
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCCC------------ccEEEEccCChhHHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGP------------FDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~------------~DvilhK~~~~~~~~~l~~~ 74 (330)
.+.+|+..|.+ |-|-++ +|..++.++|-++..++++..-...|+ +|+|+.|-..+.....+.
T Consensus 69 ~GK~la~lF~epSTRTR~---SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~la-- 143 (358)
T 4h31_A 69 LGKNIALIFEKASTRTRC---AFEVAAFDQGAQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGFGQAIVEELG-- 143 (358)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHH--
T ss_pred CCCEEEEEeCCCChhhHH---HHHHHHHHcCCeEEECCcccccccCccchhHHHHHhhccCceeEecccchhHHHHhh--
Confidence 45677777764 666664 587889999999999998753322232 799999977655434333
Q ss_pred HHhCCCceecC
Q 047754 75 SSRNPDVRIID 85 (330)
Q Consensus 75 ~~~~p~v~viD 85 (330)
++.+++|||
T Consensus 144 --~~s~vPVIN 152 (358)
T 4h31_A 144 --AFAGVPVWN 152 (358)
T ss_dssp --HHSSSCEEE
T ss_pred --hhccCceEC
Confidence 345799998
No 91
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=37.54 E-value=77 Score=29.08 Aligned_cols=73 Identities=11% Similarity=0.210 Sum_probs=49.9
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC-------------CccEEEEccCChhHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG-------------PFDCIMHKLYGPDWTQQLQQ 73 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~-------------~~DvilhK~~~~~~~~~l~~ 73 (330)
++.+|+..|.+ |-|-+. +|..++.++|-+++.++++..-...| .+|+|+.|-..+.....+.+
T Consensus 35 ~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~~~~~~la~ 111 (304)
T 3r7f_A 35 TGKFAANLFFEPSTRTRF---SFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDEYYEELVS 111 (304)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSSTTCHHHHHH
T ss_pred CCCEEEEEecCCChhHHH---hHHHHHHHCCCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCChhHHHHHHH
Confidence 45677766654 555553 58888999999999999874322222 25999999887654454443
Q ss_pred HHHhCCCceecChH
Q 047754 74 FSSRNPDVRIIDPP 87 (330)
Q Consensus 74 ~~~~~p~v~viDp~ 87 (330)
+.+++|||=.
T Consensus 112 ----~~~vPVINag 121 (304)
T 3r7f_A 112 ----QVNIPILNAG 121 (304)
T ss_dssp ----HCSSCEEESC
T ss_pred ----hCCCCEEeCC
Confidence 4579999854
No 92
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=37.29 E-value=55 Score=30.20 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=49.3
Q ss_pred CCceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHH
Q 047754 7 QPYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQ 73 (330)
Q Consensus 7 ~~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~ 73 (330)
-++.+++..|.+ |-+-+. +|..++.+.|-+++.++++..-...| =+|+|+.|-..+.....+.
T Consensus 44 L~gk~la~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA- 119 (315)
T 1pvv_A 44 LEGKTLAMIFQKPSTRTRV---SFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLA- 119 (315)
T ss_dssp TTTCEEEEEESSCCSHHHH---HHHHHHHHTTSEEEEEEGGGSTTTTTCCHHHHHHHHTTTCSEEEEECSSHHHHHHHH-
T ss_pred CCCCEEEEEecCCCcchHH---HHHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHhCcEEEEecCchHHHHHHH-
Confidence 356777777654 555553 58888999999999999764221122 2699999987665444444
Q ss_pred HHHhCCCceecC
Q 047754 74 FSSRNPDVRIID 85 (330)
Q Consensus 74 ~~~~~p~v~viD 85 (330)
++.+++|||
T Consensus 120 ---~~~~vPVIN 128 (315)
T 1pvv_A 120 ---KYATVPVIN 128 (315)
T ss_dssp ---HHCSSCEEE
T ss_pred ---HhCCCCEEc
Confidence 345799999
No 93
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=36.24 E-value=67 Score=30.06 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=46.4
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCCC------------ccEEEEccCChhHHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGP------------FDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~------------~DvilhK~~~~~~~~~l~~~ 74 (330)
++.+|+..|.+ |-|-+ -+|..++.+.|-+++.++++..-...|+ +|+|+.|-..+.....+.+
T Consensus 69 ~gK~la~lF~epSTRTR---~SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~y~D~IviR~~~~~~~~~lA~- 144 (340)
T 4ep1_A 69 QGKILGLIFDKHSTRTR---VSFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAK- 144 (340)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEEESCC------CCTTHHHHHHHHHCSEEEEECSCHHHHHHHHH-
T ss_pred CCceEEEEecCCCccHH---HHHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHHH-
Confidence 45677776654 44444 3588889999999999998732111221 6999999876654444433
Q ss_pred HHhCCCceecC
Q 047754 75 SSRNPDVRIID 85 (330)
Q Consensus 75 ~~~~p~v~viD 85 (330)
+.+++|||
T Consensus 145 ---~~~vPVIN 152 (340)
T 4ep1_A 145 ---ESSIPVIN 152 (340)
T ss_dssp ---HCSSCEEE
T ss_pred ---hCCCCEEe
Confidence 45799998
No 94
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=35.05 E-value=66 Score=29.48 Aligned_cols=71 Identities=10% Similarity=0.148 Sum_probs=48.6
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~~ 74 (330)
++.+|+..|.+ |-|-+ -+|..++.+.|-+++.++....-...| =+|+|+.|-..+.....+.+
T Consensus 44 ~gk~~~~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la~- 119 (301)
T 2ef0_A 44 KGKVLALLFEKPSLRTR---TTLEVAMVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAARVFRHETVEALAR- 119 (301)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEEEGGGSCTTTCCCHHHHHHHHTTTCSEEEEECSSHHHHHHHHH-
T ss_pred CCCEEEEEeccCCcchH---HHHHHHHHHcCCeEEEECCcccccCCCCchHHHHHHHHHhCCEEEEecCChHHHHHHHH-
Confidence 56677766654 44544 358888999999999999874221122 26999999876654444443
Q ss_pred HHhCCCceecC
Q 047754 75 SSRNPDVRIID 85 (330)
Q Consensus 75 ~~~~p~v~viD 85 (330)
+.+++|||
T Consensus 120 ---~~~vPVIN 127 (301)
T 2ef0_A 120 ---HAKVPVVN 127 (301)
T ss_dssp ---HCSSCEEE
T ss_pred ---HCCCCEEe
Confidence 45799999
No 95
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=34.63 E-value=53 Score=30.20 Aligned_cols=71 Identities=13% Similarity=0.219 Sum_probs=49.1
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCCC------------ccEEEEccCChhHHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGP------------FDCIMHKLYGPDWTQQLQQF 74 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~------------~DvilhK~~~~~~~~~l~~~ 74 (330)
++.+++..|.+ |-+-+. +|..++.++|-++..++....-...|+ +|+|+.|-..+.....+.
T Consensus 38 ~gk~l~~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA-- 112 (307)
T 2i6u_A 38 GPRGVAVIFDKNSTRTRF---SFELGIAQLGGHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWRTFGQERLDAMA-- 112 (307)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEEEGGGSGGGGTCCHHHHHHHHHHHEEEEEEECSSHHHHHHHH--
T ss_pred CCCEEEEEecCCCcchHH---HHHHHHHHcCCeEEEECCccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHH--
Confidence 56777776654 555553 588889999999999998742222222 699999987665444443
Q ss_pred HHhCCCceecC
Q 047754 75 SSRNPDVRIID 85 (330)
Q Consensus 75 ~~~~p~v~viD 85 (330)
++.+++|||
T Consensus 113 --~~~~vPVIN 121 (307)
T 2i6u_A 113 --SVATVPVIN 121 (307)
T ss_dssp --HHCSSCEEE
T ss_pred --hhCCCCEEc
Confidence 345799999
No 96
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=34.04 E-value=1.4e+02 Score=27.42 Aligned_cols=74 Identities=16% Similarity=0.112 Sum_probs=48.9
Q ss_pred CCceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCC-CCCCCcCCC------------ccEEEEccCChhHHHHHH
Q 047754 7 QPYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDP-DKPLTEQGP------------FDCIMHKLYGPDWTQQLQ 72 (330)
Q Consensus 7 ~~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~-~~~l~~q~~------------~DvilhK~~~~~~~~~l~ 72 (330)
-++.+|+..|.+ |-|-+ -+|..++.++|-++..++. +..-...|+ +|+|+.|-..+.....+.
T Consensus 38 L~gk~la~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA 114 (306)
T 4ekn_B 38 LEGKILATVFYEPSTRTR---LSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARLAS 114 (306)
T ss_dssp TTTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEECCCTTTTSSSSCCHHHHHHHHHHHCSEEEEECSSTTHHHHHH
T ss_pred cCCceEEEEEcCCChhHH---hhHHHHHHHcCCEEEEcCCcccccCCCCCCHHHHHHHHHHhCcEEEEEcCChHHHHHHH
Confidence 356677777765 33444 3588889999999999987 432222222 599999987665444443
Q ss_pred HHHHhCCCceecChH
Q 047754 73 QFSSRNPDVRIIDPP 87 (330)
Q Consensus 73 ~~~~~~p~v~viDp~ 87 (330)
++.+++|||=.
T Consensus 115 ----~~~~vPVINag 125 (306)
T 4ekn_B 115 ----EYSQVPIINAG 125 (306)
T ss_dssp ----HHCSSCEEESC
T ss_pred ----HhCCCCEEeCC
Confidence 34579999853
No 97
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=33.53 E-value=60 Score=30.68 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=49.7
Q ss_pred CCCceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCCC------------ccEEEEccCChhHHHHHH
Q 047754 6 GQPYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGP------------FDCIMHKLYGPDWTQQLQ 72 (330)
Q Consensus 6 ~~~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~------------~DvilhK~~~~~~~~~l~ 72 (330)
.-++..|+..|.+ |-|-+ -+|..++.++|-+++.++++..-...|+ +|+|..|-..+.....+.
T Consensus 68 ~L~GK~va~lF~e~STRTR---~SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA 144 (365)
T 4amu_A 68 PLVGKNIAILFQKDSTRTR---CAFEVAASDLGAGVTYIGPSGSNMGKKESIEDTAKVLGRFYDGIEFRGFAQSDVDALV 144 (365)
T ss_dssp TTTTCEEEEEESSCCHHHH---HHHHHHHHHHTCEEEEECHHHHCCSSSSCHHHHHHHHHHHCSEEEEECSCHHHHHHHH
T ss_pred ccCCceEEEEecCCCchHH---HHHHHHHHhCCCEEEEcCCccccCCCCcCHHHHHHHHHhhCcEEEEecCChhHHHHHH
Confidence 3456777777765 44544 3588889999999999987632111221 799999987765555555
Q ss_pred HHHHhCCCceecC
Q 047754 73 QFSSRNPDVRIID 85 (330)
Q Consensus 73 ~~~~~~p~v~viD 85 (330)
+|. ++||||
T Consensus 145 ~~s----~vPVIN 153 (365)
T 4amu_A 145 KYS----GVPVWN 153 (365)
T ss_dssp HHH----CSCEEE
T ss_pred HhC----CCCEEe
Confidence 554 799998
No 98
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=32.84 E-value=80 Score=30.33 Aligned_cols=56 Identities=18% Similarity=0.113 Sum_probs=39.8
Q ss_pred EEEeeCCCCCCCCCcceEEEeChhhhhcCC----------------CCeEEEecccCC----C--eEEEEEEECCeEEEE
Q 047754 144 LIAKPLEANGSDKSHQMYLIFDNEGLEVLE----------------APILLQEFVNHG----G--IIFKVYVAGSSVKCV 201 (330)
Q Consensus 144 ~VvKp~~a~Gs~~sh~m~iv~~~~~L~~l~----------------~p~vvQefI~h~----g--~~~Kv~ViG~~v~~~ 201 (330)
+|||-.. |+ .+-|+..|.+.+++..++ ..+++||=|.+- + .+-=||+||.+|++.
T Consensus 280 V~VKADa--GT-YGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~~vvGg 356 (432)
T 3k1t_A 280 VIVKADA--GT-YGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVAEPVIYMMDHFVVGG 356 (432)
T ss_dssp EEEEEEC--GG-GCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEEEEEEEEETTEEEEE
T ss_pred EEEEcCC--CC-CCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcchhhhhCCccccceEEEECCEEEEE
Confidence 6899555 45 556667778888887762 159999988862 2 234699999999964
Q ss_pred E
Q 047754 202 K 202 (330)
Q Consensus 202 ~ 202 (330)
-
T Consensus 357 F 357 (432)
T 3k1t_A 357 F 357 (432)
T ss_dssp E
T ss_pred E
Confidence 4
No 99
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=30.93 E-value=76 Score=29.18 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=48.6
Q ss_pred CCceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCCC------------ccEEEEccCChhHHHHHHH
Q 047754 7 QPYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGP------------FDCIMHKLYGPDWTQQLQQ 73 (330)
Q Consensus 7 ~~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~------------~DvilhK~~~~~~~~~l~~ 73 (330)
-++.+|+..|.+ |-+-+ -+|..++.+.|-++..++++..-...|+ +|+|+.|-..+.....
T Consensus 43 L~gk~la~lF~e~STRTR---~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~--- 116 (309)
T 4f2g_A 43 LHDRTLAMIFEKSSTRTR---LSFEAGIFQLGGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIRTFEQDIIQR--- 116 (309)
T ss_dssp TTTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEECCSSCEETBEECHHHHHHHHHHHCSEEEEECSCHHHHHH---
T ss_pred cCCceEEEEecCCChhhH---hhHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCCHHHHHH---
Confidence 456677777755 44544 3588889999999999998732111121 6999999876543332
Q ss_pred HHHhCCCceecC
Q 047754 74 FSSRNPDVRIID 85 (330)
Q Consensus 74 ~~~~~p~v~viD 85 (330)
++++.+++|||
T Consensus 117 -lA~~~~vPVIN 127 (309)
T 4f2g_A 117 -FAENSRVPVIN 127 (309)
T ss_dssp -HHHTCSSCEEE
T ss_pred -HHHhCCCCEEE
Confidence 34567899999
No 100
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=30.70 E-value=64 Score=29.94 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=47.8
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCc------------CCC------------ccEEEEcc
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTE------------QGP------------FDCIMHKL 62 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~------------q~~------------~DvilhK~ 62 (330)
++.+|+..|.+ |-|-+ -+|..++.++|-++..+++...-.. .|+ .|+|..|-
T Consensus 35 ~gk~l~~lF~epSTRTR---~SFe~A~~~LGg~~i~l~~~~ss~~~e~~~g~~m~~~kgEsl~DTarvLs~y~D~IviR~ 111 (324)
T 1js1_X 35 RNKTLLMIFFNSSLRTR---LSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRS 111 (324)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHHHTTCEEEEEECCGGGCCEECCSSCCCCSSCCEEHHHHHHHHHHTCSEEEEEC
T ss_pred CCCEEEEEecCCCcchH---HHHHHHHHHcCCEEEEECCCCCceeeccccccccccCCCCCHHHHHHHHHHhCcEEEEec
Confidence 56777776655 55555 3588889999999999998742212 232 79999886
Q ss_pred C----ChhH--HHHHHHHHHhCCCceecC
Q 047754 63 Y----GPDW--TQQLQQFSSRNPDVRIID 85 (330)
Q Consensus 63 ~----~~~~--~~~l~~~~~~~p~v~viD 85 (330)
. +..+ .+..-+.++++.+++|||
T Consensus 112 ~~~~~~~~~~~~~~~~~~lA~~~~vPVIN 140 (324)
T 1js1_X 112 FARFENREYDYNEVIINQFIQHSGRPVFS 140 (324)
T ss_dssp CCCSSCHHHHHHTHHHHHHHHHSSSCEEE
T ss_pred ccccccccccccchHHHHHHhhCCCCEEE
Confidence 5 1110 111223334556899999
No 101
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=29.29 E-value=75 Score=29.20 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=49.0
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCC-CCCcCC------------CccEEEEccCChhHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDK-PLTEQG------------PFDCIMHKLYGPDWTQQLQQ 73 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~-~l~~q~------------~~DvilhK~~~~~~~~~l~~ 73 (330)
++.+++..|.+ |-|-+ -+|..++.++|-++..++... .....| =+|+|..|-..+.....+
T Consensus 43 ~gk~l~~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~~s~~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~l-- 117 (308)
T 1ml4_A 43 KGKILATLFFEPSTRTR---LSFESAMHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQYCDVIVIRHPKEGAARLA-- 117 (308)
T ss_dssp TTCEEEEEESSCCSHHH---HHHHHHHHHTTCEEEEESCGGGSGGGGTCCHHHHHHHHTTTCSEEEEEESSTTHHHHH--
T ss_pred CCCEEEEEecCCCchHH---HHHHHHHHHhCCeEEEeCCCccccccCCCCHHHHHHHHHHhCcEEEEecCChhHHHHH--
Confidence 45677766654 54555 358888999999999998774 211111 269999997766543333
Q ss_pred HHHhCCCceecChH
Q 047754 74 FSSRNPDVRIIDPP 87 (330)
Q Consensus 74 ~~~~~p~v~viDp~ 87 (330)
+++.+++|||=.
T Consensus 118 --a~~~~vPVINag 129 (308)
T 1ml4_A 118 --AEVAEVPVINAG 129 (308)
T ss_dssp --HHTCSSCEEEEE
T ss_pred --HHhCCCCEEeCc
Confidence 356689999944
No 102
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=28.63 E-value=1.5e+02 Score=27.65 Aligned_cols=73 Identities=12% Similarity=0.131 Sum_probs=47.6
Q ss_pred CCceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCCCCcCC------------CccEEEEccCChhHHHHHHH
Q 047754 7 QPYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQG------------PFDCIMHKLYGPDWTQQLQQ 73 (330)
Q Consensus 7 ~~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~l~~q~------------~~DvilhK~~~~~~~~~l~~ 73 (330)
-++.+|+..|.+ |-|-+ -+|..++.++|-+++.++.+..-...| =+|+|+.|-..+.....+
T Consensus 64 L~gk~va~lF~e~STRTR---~SFE~A~~~LGg~~i~l~~~~s~l~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~l-- 138 (353)
T 3sds_A 64 LSGKTVAMMFSKRSTRTR---VSTEGAVVKMGGHPMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARVGPHSDIANL-- 138 (353)
T ss_dssp TTTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEECTTTC--CCSSCHHHHHHHHHTSCSEEEEECSSHHHHHHH--
T ss_pred cCCCEEEEEecCCchhHH---HHHHHHHHHcCCeEEecCCccccccCCccHHHHHHHHHHhcCEEEEEeCChHHHHHH--
Confidence 356677777765 44544 358888999999999998764221111 279999987655433333
Q ss_pred HHHhCCCceecCh
Q 047754 74 FSSRNPDVRIIDP 86 (330)
Q Consensus 74 ~~~~~p~v~viDp 86 (330)
+++.+++|||=
T Consensus 139 --A~~s~vPVINa 149 (353)
T 3sds_A 139 --AKHSSVPVINA 149 (353)
T ss_dssp --HHHCSSCEEEE
T ss_pred --HhhCCCCEEEC
Confidence 34568999984
No 103
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=28.04 E-value=1e+02 Score=28.12 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=47.1
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCC-CCcCCC------------ccEEEEccCChhHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKP-LTEQGP------------FDCIMHKLYGPDWTQQLQQ 73 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~-l~~q~~------------~DvilhK~~~~~~~~~l~~ 73 (330)
++.+++..|.+ |-|-+ -+|..++.++|-++..++.... -...|+ +|+|+.|-..+.....+.+
T Consensus 37 ~gk~~~~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~~s~~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la~ 113 (299)
T 1pg5_A 37 SGKTISIAFFEPSTRTY---LSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNYSDGIVMRHKYDGASRFASE 113 (299)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHHTTCEEEEEECC-------CCCHHHHHHHHHHHCSEEEEEESSBTHHHHHHH
T ss_pred CCCEEEEEecCCCcchH---HhHHHHHHHhCCEEEEeCCCCcccccCCCCHHHHHHHHHHhCCEEEEeCCChhHHHHHHH
Confidence 55677777765 44444 3588889999999999987642 112222 6999999776654444444
Q ss_pred HHHhCCCceecCh
Q 047754 74 FSSRNPDVRIIDP 86 (330)
Q Consensus 74 ~~~~~p~v~viDp 86 (330)
+.+++|||=
T Consensus 114 ----~~~vPVINa 122 (299)
T 1pg5_A 114 ----ISDIPVINA 122 (299)
T ss_dssp ----HCSSCEEEE
T ss_pred ----hCCCCEEeC
Confidence 457999993
No 104
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=27.60 E-value=1e+02 Score=23.14 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHhCCcEEEEEEEEeC-------CCCCeeEEEEeeCCCCCCCCCC--cHHHHHHHHHHHH
Q 047754 247 EGFVVELSRALREALGLNLFNFDLIRDA-------GERDGYLVIDINYLPGYAKLPG--YETLLMDFFLNVA 309 (330)
Q Consensus 247 ~~~~~~lA~~~~~~LGl~l~GvDvi~~~-------~~g~~~~ViEVN~fPg~~g~~~--~~~~l~~~i~~~~ 309 (330)
...++++...+++.||..---+-+.+.. ++.+++++|+|..++|...-.+ +.+.+++.+.+.+
T Consensus 17 ~~l~~~~~~~l~~~lgkp~~~~~v~~~~~~~~~~~g~~~~~~~v~i~~~~g~t~eqk~~l~~~i~~~l~~~l 88 (115)
T 2xcz_A 17 NSLLQELSSKLAELLGKPEKYVMTSLQCGVPMTFSGNTEPTCYVEVKSIGALDGSRTQEVSELVCGHIEQNL 88 (115)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEEEECSCCCCBTTBCSSCEEEEEEESSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHEEEEEECCCceEECCCCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHh
Confidence 5677899999999999874333333331 2335689999999887643322 5666666666555
No 105
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=27.33 E-value=80 Score=30.32 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCcEEEEEEEEeCCCCCeeEEEEeeCCCC-CCCC-CCcHHHHHHHHHHHHHhc
Q 047754 253 LSRALREALGLNLFNFDLIRDAGERDGYLVIDINYLPG-YAKL-PGYETLLMDFFLNVAKSK 312 (330)
Q Consensus 253 lA~~~~~~LGl~l~GvDvi~~~~~g~~~~ViEVN~fPg-~~g~-~~~~~~l~~~i~~~~~~~ 312 (330)
...+-.+.----+..||+.-. |-.+.=||.|.||| |-.+ |++...-++++...+.+.
T Consensus 33 Fr~~w~~~~~PfY~SVDlRna---GfKlAPVDtNLFPaGFNNL~~~~~plavqa~~~aiek~ 91 (432)
T 3k1t_A 33 FRSQWQEYGAPFYASVDLRNA---GFKLAPVDTNLFPGGFNNLNPDFLPLCIQAAMVAVEKI 91 (432)
T ss_dssp HHHHHHHHCCCSEEEEEEEEC---SSCEEEEEEESSCCCGGGSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCceEEEEeccc---CCccccccccCCCcccccCCHHHHHHHHHHHHHHHHHh
Confidence 334444444444556997743 33589999999996 7777 555555555555555443
No 106
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=25.43 E-value=95 Score=27.68 Aligned_cols=62 Identities=13% Similarity=-0.041 Sum_probs=44.9
Q ss_pred hHHHHHHHHCCCeEEEeCCCCCCC---cCCCccEEEEc-cC----ChhHHHHHHHHHHhCCCceecChHH
Q 047754 27 PSLITKATEQGIGLIRIDPDKPLT---EQGPFDCIMHK-LY----GPDWTQQLQQFSSRNPDVRIIDPPE 88 (330)
Q Consensus 27 ~~l~~~~~~~Gi~~~~id~~~~l~---~q~~~DvilhK-~~----~~~~~~~l~~~~~~~p~v~viDp~~ 88 (330)
..|.++.++.|+++..++...-.. ....||+||.- .. +...+..|++|+++--|++++--..
T Consensus 20 ~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d~~~~~l~~~~~~~L~~yV~~GGgLi~~gG~~ 89 (259)
T 3rht_A 20 GYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSDYPAERMTAQAIDQLVTMVKAGCGLVMLGGWE 89 (259)
T ss_dssp HHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEESCCGGGBCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred HHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcCCccccCCHHHHHHHHHHHHhCCeEEEecCcc
Confidence 558888899999999999985432 23589999854 22 2334688999998877888885443
No 107
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=25.29 E-value=2.2e+02 Score=21.35 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=46.7
Q ss_pred cCcchHHHHHHHHCCCe--EEEeCCCCCCCc-CCCccEEEEccCChhHHHHHHHHHHh-CCCceecChHHHHHHhcCHHH
Q 047754 23 TVIQPSLITKATEQGIG--LIRIDPDKPLTE-QGPFDCIMHKLYGPDWTQQLQQFSSR-NPDVRIIDPPESIERLHNRDS 98 (330)
Q Consensus 23 ~~~~~~l~~~~~~~Gi~--~~~id~~~~l~~-q~~~DvilhK~~~~~~~~~l~~~~~~-~p~v~viDp~~ai~~~~dR~~ 98 (330)
++...++.++++++|++ +...+.. .+.. ...+|+||.=..-......+++.... .-.+.+|||.... .+|.-.
T Consensus 18 Sll~~kl~~~~~~~gi~~~i~~~~~~-~~~~~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv~~I~~~~y~--~~d~~~ 94 (109)
T 2l2q_A 18 SMLVQRIEKYAKSKNINATIEAIAET-RLSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEIINTIDYG--TMNGEK 94 (109)
T ss_dssp CHHHHHHHHHHHHHTCSEEEEEECST-THHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCEEECCHHHHH--HTCHHH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecHH-HHHhhcCCCCEEEECCccHHHHHHHHHHhcccCCCEEEEChHHhc--cCCHHH
Confidence 46667888999999985 4444444 2221 34689998543322223445444332 2246779998775 467766
Q ss_pred HHHHHH
Q 047754 99 MLEVVS 104 (330)
Q Consensus 99 ~~~~L~ 104 (330)
.++.+.
T Consensus 95 vl~~i~ 100 (109)
T 2l2q_A 95 VLQLAI 100 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 108
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=23.91 E-value=1e+02 Score=28.26 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=48.1
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEEeCCCCC---CCc-----------CCCccEEEEccCChhHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIRIDPDKP---LTE-----------QGPFDCIMHKLYGPDWTQQLQ 72 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~id~~~~---l~~-----------q~~~DvilhK~~~~~~~~~l~ 72 (330)
++.+++..|.+ |-|-+ -+|..++.++|-++..++.... +.. ..=+|+|..|-..+.....+.
T Consensus 40 ~gk~la~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~~~S~~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~la 116 (310)
T 3csu_A 40 KHKVIASCFFEASTRTR---LSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLAT 116 (310)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHTTTCEEEEESCC-----CCSHHHHHHHHHHHTTTCSEEEEEESSTTHHHHHH
T ss_pred CCCEEEEEecCCCccHH---HHHHHHHHHhCCeEEEeCCCccchhhccCCcHHHHHHHHHHhCCEEEEECCChhHHHHHH
Confidence 45677766665 43444 3588889999999999988753 211 112699999987665444444
Q ss_pred HHHHhCCCceecChH
Q 047754 73 QFSSRNPDVRIIDPP 87 (330)
Q Consensus 73 ~~~~~~p~v~viDp~ 87 (330)
+|. ++++|||=.
T Consensus 117 ~~~---~~vPVINag 128 (310)
T 3csu_A 117 EFS---GNVPVLNAG 128 (310)
T ss_dssp HHC---TTCCEEEEE
T ss_pred Hhc---CCCCEEcCc
Confidence 432 279999944
No 109
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=22.64 E-value=1.2e+02 Score=25.73 Aligned_cols=52 Identities=19% Similarity=0.050 Sum_probs=34.8
Q ss_pred CCceEEEEEeccCCcccC--cchHHHHHHHHCCCeEEEeCCCCCCCc---------CCCccEEE
Q 047754 7 QPYCKIGYVFAPNKEQTV--IQPSLITKATEQGIGLIRIDPDKPLTE---------QGPFDCIM 59 (330)
Q Consensus 7 ~~~~~vg~~~~~~k~~~~--~~~~l~~~~~~~Gi~~~~id~~~~l~~---------q~~~Dvil 59 (330)
.+..+||+.++.-...-+ ....+.++|+++|+++...+.. +... ...+|.||
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI 65 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII 65 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE
Confidence 456789999987432211 1233567788899999999887 4432 24688888
No 110
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=22.16 E-value=1.8e+02 Score=24.65 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=27.4
Q ss_pred CCCceEEEEEeccCCcccC--cchHHHHHHHHCCCeEEEeCCC
Q 047754 6 GQPYCKIGYVFAPNKEQTV--IQPSLITKATEQGIGLIRIDPD 46 (330)
Q Consensus 6 ~~~~~~vg~~~~~~k~~~~--~~~~l~~~~~~~Gi~~~~id~~ 46 (330)
..+..+||+.++.-...-+ ....+.++|+++|+++...+..
T Consensus 4 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~ 46 (276)
T 3jy6_A 4 TQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDAN 46 (276)
T ss_dssp -CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4566789999987532111 1234677788899999888765
No 111
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=22.14 E-value=1.9e+02 Score=25.00 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=26.5
Q ss_pred ceEEEEEeccCCcccC--cchHHHHHHHHCCCeEEEeCCCCC
Q 047754 9 YCKIGYVFAPNKEQTV--IQPSLITKATEQGIGLIRIDPDKP 48 (330)
Q Consensus 9 ~~~vg~~~~~~k~~~~--~~~~l~~~~~~~Gi~~~~id~~~~ 48 (330)
..+||+.++.....-+ ....+.++|+++|+++...+...+
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~ 43 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGN 43 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTTC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCC
Confidence 4689999986432211 123467788999999998877543
No 112
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=21.42 E-value=1.3e+02 Score=27.96 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=44.1
Q ss_pred CceEEEEEecc-CCcccCcchHHHHHHHHCCCeEEE--eCCCCCCC------c-----CCCccEEEEccCChhHHHHHHH
Q 047754 8 PYCKIGYVFAP-NKEQTVIQPSLITKATEQGIGLIR--IDPDKPLT------E-----QGPFDCIMHKLYGPDWTQQLQQ 73 (330)
Q Consensus 8 ~~~~vg~~~~~-~k~~~~~~~~l~~~~~~~Gi~~~~--id~~~~l~------~-----q~~~DvilhK~~~~~~~~~l~~ 73 (330)
++.+|+..|.+ |-|-+ -+|..++.++|-++.. ++++..+. + ..=+|+|+.|-..+.....+.+
T Consensus 43 ~gk~la~lF~e~STRTR---~SFE~A~~~LGg~~i~~~l~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~ 119 (328)
T 3grf_A 43 ANKTLLAFFAKPSLRTR---VSLETAMTRLGGHAIYYELGANSNVGGKETVQDTAEVFSRMVDICTARLATKEMMREMAQ 119 (328)
T ss_dssp TTCEEEEEESSCCHHHH---HHHHHHHHHHTCEEEEEEC----------CHHHHHHHHTTTCSEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEEecCCCchHH---HHHHHHHHHCCCeEEccccCccccCCCCCCHHHHHHHHHhhCCEEEEecCChhHHHHHHH
Confidence 45677777654 44544 3588888999999999 76511111 0 0127999999876654444433
Q ss_pred HHHhCCCceecC
Q 047754 74 FSSRNPDVRIID 85 (330)
Q Consensus 74 ~~~~~p~v~viD 85 (330)
+.+++|||
T Consensus 120 ----~~~vPVIN 127 (328)
T 3grf_A 120 ----HASVPCIN 127 (328)
T ss_dssp ----HCSSCEEE
T ss_pred ----hCCCCEEe
Confidence 45799998
No 113
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=21.37 E-value=1.7e+02 Score=25.00 Aligned_cols=42 Identities=7% Similarity=0.150 Sum_probs=26.4
Q ss_pred CCCceEEEEEeccCCcccC--cchHHHHHHHHCCCeEEEeCCCC
Q 047754 6 GQPYCKIGYVFAPNKEQTV--IQPSLITKATEQGIGLIRIDPDK 47 (330)
Q Consensus 6 ~~~~~~vg~~~~~~k~~~~--~~~~l~~~~~~~Gi~~~~id~~~ 47 (330)
..+..+||+.++.-...-+ ....+.++|+++|+++...+...
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 48 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQN 48 (293)
T ss_dssp ----CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CCCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCC
Confidence 4566899999987432111 12346778899999999887653
No 114
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=21.23 E-value=1.6e+02 Score=25.69 Aligned_cols=65 Identities=11% Similarity=0.135 Sum_probs=38.0
Q ss_pred CceEEEEEeccCCcccC--cchHHHHHHHHCCCeEEEeCCCCCCCcCCCccEEEEccCChhHHHHHHHHHHhCCCceecC
Q 047754 8 PYCKIGYVFAPNKEQTV--IQPSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRNPDVRIID 85 (330)
Q Consensus 8 ~~~~vg~~~~~~k~~~~--~~~~l~~~~~~~Gi~~~~id~~~~l~~q~~~DvilhK~~~~~~~~~l~~~~~~~p~v~viD 85 (330)
+..+||+.++.....-+ ....+.++|+++|+++...+...+.. .....++.++......+++.
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~---------------~~~~~i~~~~~~~vdgiIi~ 66 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDIP---------------NQLSQIENMVTKGVKVLVIA 66 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTTCHH---------------HHHHHHHHHHHHTCSEEEEC
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCCCHH---------------HHHHHHHHHHHcCCCEEEEE
Confidence 45789999987542211 12336778899999988876432211 11344555555556555555
Q ss_pred hH
Q 047754 86 PP 87 (330)
Q Consensus 86 p~ 87 (330)
|.
T Consensus 67 ~~ 68 (330)
T 3uug_A 67 SI 68 (330)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 115
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=20.39 E-value=84 Score=30.77 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=20.1
Q ss_pred CCcEEEEEEEEeCCCCCeeEEEEeeC
Q 047754 262 GLNLFNFDLIRDAGERDGYLVIDINY 287 (330)
Q Consensus 262 Gl~l~GvDvi~~~~~g~~~~ViEVN~ 287 (330)
=+.++|+|++++. +| .++|+|-|.
T Consensus 141 ~~~i~~~Dl~r~~-dG-~~~vlEdn~ 164 (474)
T 3n6x_A 141 YAHIAGVDLVRTG-EN-DFYVLEDNL 164 (474)
T ss_dssp SCSEEEEEEEECS-SS-CEEEEEEEC
T ss_pred EEEEEEEEEEECC-CC-CEEEEEeCC
Confidence 3689999999985 56 489999996
No 116
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=20.34 E-value=27 Score=26.19 Aligned_cols=19 Identities=26% Similarity=0.791 Sum_probs=15.8
Q ss_pred EecccCC--CeEEEEEEECCe
Q 047754 179 QEFVNHG--GIIFKVYVAGSS 197 (330)
Q Consensus 179 QefI~h~--g~~~Kv~ViG~~ 197 (330)
+.|+||+ |-+|+|..+|+.
T Consensus 4 E~YLNHPtFGlLy~Vc~~~e~ 24 (89)
T 2xko_C 4 ENYLNHPTFGLLYQICSFGDS 24 (89)
T ss_dssp CCEEEETTTEEEEEEEECC-C
T ss_pred cccccCCccchhheeeeCCCc
Confidence 5699997 899999999985
Done!