RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 047754
(330 letters)
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 291 bits (746), Expect = 1e-97
Identities = 87/326 (26%), Positives = 164/326 (50%), Gaps = 17/326 (5%)
Query: 11 KIGYVFAPNKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLY------- 63
++GY + K + + + ++G+ +++++ +P+ EQGP D I+HKL
Sbjct: 20 RVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEAD 79
Query: 64 -----GPDWTQQLQQFSSRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVP 118
+ + Q++ +P+ ++DP +I L +R E++ +++ + +++ P
Sbjct: 80 QNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSP 139
Query: 119 NQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVLEAPILL 178
++ +E+ L FP I K A+G+ SH+M ++F+ EGL ++ P ++
Sbjct: 140 PFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVV 198
Query: 179 QEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQIS---SNSVDADE 235
Q F+NH +++KV+V G S V+R SL + S F +S S+SV +
Sbjct: 199 QNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTEL 258
Query: 236 EVDLEKTEMPREGFVVELSRALREALGLNLFNFDLIRDAGERDGYLVIDINYLPGYAKLP 295
+ E P + + ELSRALR+ALG++LF D+I + + VIDIN PGY +
Sbjct: 259 DKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQ-TGQHAVIDINAFPGYEGVS 317
Query: 296 GYETLLMDFFLNVAKSKAVEEVTSGD 321
+ T L++ V + ++ +GD
Sbjct: 318 EFFTDLLNHIATVLQGQSTAMAATGD 343
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 261 bits (667), Expect = 4e-86
Identities = 63/332 (18%), Positives = 136/332 (40%), Gaps = 28/332 (8%)
Query: 1 MSNHEGQPYCKIGYVFAPNKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMH 60
+ + + + +K++T+ + E + + L ++ P I
Sbjct: 3 LGSMTTKQTVSLFIWLPESKQKTLFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITK 62
Query: 61 KLYG-PDWTQQLQQFSSRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPN 119
+ + +++++ +P V ++ + + +R+ + + L K + +PN
Sbjct: 63 RTHPVGKMADEMRKYEKDHPKVLFLESSAIHDMMSSREEINAL-------LIKNNIPIPN 115
Query: 120 QAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVLEAPILLQ 179
V E V + ++ +L P I KP A G+ +HQM ++ + EG++ + P L Q
Sbjct: 116 SFSVKSKEEVIQ--LLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQ 173
Query: 180 EFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKG-----------------FLP 222
++NH I KV+ G+++K R SLP++ +KS+
Sbjct: 174 HYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQD 233
Query: 223 FSQISSNSVDADEEVDLEKTEMPREGFVVELSRALREALGLNLFNFDLIRDAGERDGYLV 282
+ S+N + D + E + +L+ +R ALG+ L D I++ + + LV
Sbjct: 234 IIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQGN-PLV 292
Query: 283 IDINYLPGYAKLPGYETLLMDFFLNVAKSKAV 314
+D+N P Y ++ + L + +
Sbjct: 293 VDVNVFPSYGGKVDFDWFVEKVALCYTEVAKI 324
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 58.2 bits (141), Expect = 6e-10
Identities = 44/278 (15%), Positives = 86/278 (30%), Gaps = 54/278 (19%)
Query: 29 LITKATEQGIGLIRIDPDK---PLTEQGP----FDC-IMHKLYGPDWTQQLQQFSSRNPD 80
L +A G+ ++ L E+ + + + ++
Sbjct: 16 LFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTALG-- 73
Query: 81 VRIIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKL 140
+ +++ PE IE ++ + L K + P A+ ++ E R +E
Sbjct: 74 IPVVNRPEVIEACGDKWATSVA-------LAKAGLPQPKTALATDREEALR--LMEAFG- 123
Query: 141 RFPLIAKPLEANG----SDKSHQMYLIFDNEGLEVLEAP----ILLQEFVNHGGIIFKVY 192
+P++ KP+ + + EVL +QE+V G +V+
Sbjct: 124 -YPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVF 182
Query: 193 VAGSSVKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPREGFVVE 252
V G + I++ + E + E V
Sbjct: 183 VVGERAIAAIYRRSAHW----------------ITNTARGGQA----ENCPLTEE--VAR 220
Query: 253 LSRALREALGLNLFNFDLIRDAGERDGYLVIDINYLPG 290
LS EA+G + DL G LV ++N+
Sbjct: 221 LSVKAAEAVGGGVVAVDLFES---ERGLLVNEVNHTME 255
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 42.1 bits (99), Expect = 1e-04
Identities = 36/208 (17%), Positives = 72/208 (34%), Gaps = 44/208 (21%)
Query: 83 IIDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRF 142
I+ P + E ++ +M E R I + + + A+ +++
Sbjct: 102 IVSPYAACELCFDKYTMYEYCLRQGI-------AHARTYATMASF----EEALAAGEVQL 150
Query: 143 PLIAKPLEANGSDKSHQMYLIFDNEGLEVL---EAPILLQEFVNHGGIIFKVYVAGSSVK 199
P+ KP + S + + + E +E L +++QE + + YV S K
Sbjct: 151 PVFVKPRNGSASIE---VRRVETVEEVEQLFSKNTDLIVQELLVGQELGVDAYVDLISGK 207
Query: 200 CVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRALRE 259
I ++ +++ + S + + D V EL + +
Sbjct: 208 VTS------IFIKEKLTMRAG--ETDKSRSVLRDD---------------VFELVEHVLD 244
Query: 260 ALGLN-LFNFDLIRDAGERDGYLVIDIN 286
GL +FDL AG + +IN
Sbjct: 245 GSGLVGPLDFDLFDVAG---TLYLSEIN 269
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.029
Identities = 42/332 (12%), Positives = 93/332 (28%), Gaps = 84/332 (25%)
Query: 21 EQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRNPD 80
+ ++ ++ T + + ++ Q + ++ Y + + R P
Sbjct: 52 DHIIMSKDAVSG-TLRLFWTLLSKQEE--MVQKFVEEVLRINY--KFLMSPIKTEQRQPS 106
Query: 81 VRIIDPPESIERLHNRDSMLE--VVSRLKIELN-KEKVSVPNQAVVSETELVTRDMAIEE 137
+ E +RL+N + + VSRL+ L ++ + + ++ +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL----LELRPAKNVLIDGVL--- 159
Query: 138 LKLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVLEAPILLQEFVNHGGIIFKVYVAGSS 197
GS K+ ++ L+V + + + IF ++ +
Sbjct: 160 ---------------GSGKT---WVA-----LDVCLSYKVQCKMDFK---IF--WL---N 188
Query: 198 VKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRAL 257
+K P+ E ++ L QI N + ++ EL R L
Sbjct: 189 LKNCNS---PETVLEMLQKL-----LYQIDPNWTSRSDH--SSNIKLRIHSIQAELRRLL 238
Query: 258 RE-----AL----------GLNLFNFD---LI--RDAGERDGYLVIDINYLPGYAKLPGY 297
+ L N FN L+ R D ++
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 298 -ETLLMDFFLNVAKSKAVEEVTSGDELNESVC 328
+ L + +L V
Sbjct: 299 TPDEVKSLLLKYLDCRP-------QDLPREVL 323
Score = 27.9 bits (61), Expect = 6.0
Identities = 24/182 (13%), Positives = 56/182 (30%), Gaps = 48/182 (26%)
Query: 84 IDPPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFP 143
+D + +D + + + V ++++S+ E I+ +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-------IDHI----- 54
Query: 144 LIAKPLEANGSDKSHQMYLIFD---NEGLEVLEAPILLQEFVNHGGIIFKVY---VAGSS 197
I D +F ++ E++ Q+FV ++ Y ++
Sbjct: 55 -IMSK------DAVSGTLRLFWTLLSKQEEMV------QKFV--EEVLRINYKFLMSPIK 99
Query: 198 VKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPREGFVVELSRAL 257
+ + + + E+ L N V K + R ++L +AL
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYN--------DNQV-------FAKYNVSRLQPYLKLRQAL 144
Query: 258 RE 259
E
Sbjct: 145 LE 146
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 33.7 bits (77), Expect = 0.067
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 16/86 (18%)
Query: 86 PPESIERLHNRDSMLEVVSRLKIELNKEKVSVPNQAVV-SETELVTRDMAIEELKLRFPL 144
++ E +++ M + NK V V + + A+EE+ PL
Sbjct: 130 GVQAAENARDKNKMRDA-------FNKAGVKSIKNKRVTTLEDFRA---ALEEIG--TPL 177
Query: 145 IAKPLEANGSDKSHQMYLIFDNEGLE 170
I KP S + LI D E E
Sbjct: 178 ILKPTYLASSI---GVTLITDTETAE 200
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET:
ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A*
3t9d_A* 3t9e_A* 3t9f_A* 3t54_A* 3t99_A*
Length = 330
Score = 33.0 bits (75), Expect = 0.10
Identities = 41/254 (16%), Positives = 74/254 (29%), Gaps = 65/254 (25%)
Query: 93 LHNRDSMLEVVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRF--PLIAKPLE 150
+ +R + ++ I L + + + E L+ + +E F P + KP+
Sbjct: 95 IQDRREVYSILQAEGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPV- 153
Query: 151 ANGSDKSHQMYL--------------------IFDNEGLEVLEAPILLQEFVNHGGIIFK 190
+ D + +Y ++ E + +EF+ G K
Sbjct: 154 -SAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVK 212
Query: 191 VYVAGSS-VKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPREGF 249
VY G RKS ++D E D E E +
Sbjct: 213 VYTVGPDYAHAEARKS-----------------------PALDGKVERDSEGKE---VRY 246
Query: 250 VVELSRALRE-------ALGLNLFNFDLIRDAGERDGYLVIDINYLPGYAKLPGY----E 298
V L+ + A + FDL+R G V D+N Y
Sbjct: 247 PVILNAREKLIAWKVCLAFKQTVCGFDLLRANG---QSYVCDVNGFSFVKNSMKYYDDCA 303
Query: 299 TLLMDFFLNVAKSK 312
+L + + +
Sbjct: 304 KILGNIVMRELAPQ 317
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.17
Identities = 43/277 (15%), Positives = 76/277 (27%), Gaps = 103/277 (37%)
Query: 47 KPLT-EQGPFDC---IMHKLYGPDWTQQLQ-QFSSRNPDVRIIDPPESIERLHNRDSMLE 101
+PLT G + + + QLQ QF+ P+ P E + +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFI--ASQLQEQFNKILPE-----PTEGFA-ADDEPT--- 55
Query: 102 VVSRLKIELNKEKVSVPNQAVVSETELVTRDMAIEELKLRFPLIAKPLEANGSDKSHQMY 161
+ ELV + L + ++ +E + +
Sbjct: 56 ----------------------TPAELVGK-------FLGY--VSSLVEPSKVGQ----- 79
Query: 162 LIFDNEGLEVLEAPILLQEFVNHGGIIFKVYVAGSSVKCVKRKSLPDISEEKMKSLKGFL 221
FD +VL L EF N Y+ G+ + + L ++ + K +
Sbjct: 80 --FD----QVLNL--CLTEFENC-------YLEGNDIHALAA-KLLQENDTTLVKTKELI 123
Query: 222 PFSQISSNSVDADEEVDLEKTEMPREGFVVELSRALREALGLNLFNFDLIRDAGERDGYL 281
N + A + S AL A+ G
Sbjct: 124 ------KNYITARIMAKRPFDKKSN-------S-ALFRAV-----------GEGNAQLVA 158
Query: 282 V-----IDINYLPGYAKLPGYET---LLMDFFLNVAK 310
+ +Y L Y+T L+ D A+
Sbjct: 159 IFGGQGNTDDYFEELRDL--YQTYHVLVGDLIKFSAE 193
Score = 32.7 bits (74), Expect = 0.19
Identities = 65/340 (19%), Positives = 111/340 (32%), Gaps = 127/340 (37%)
Query: 22 QTVIQPSLITKATEQGIGLIRIDPD-KPLTEQGPFDCIMHKLYGPDWTQQLQQFSSRNPD 80
++ LI + E LIR D + + QG + I+ +W L+ S+ PD
Sbjct: 181 HVLVGD-LIKFSAETLSELIRTTLDAEKVFTQG-LN-IL------EW---LENPSNT-PD 227
Query: 81 VRIID-PPES---IE-----------RLHNRDSMLEVVSRLKIELNKEKVSVPNQAVVS- 124
+ P S I +L + E+ S LK + +Q +V+
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGF-TPGELRSYLK------GATGHSQGLVTA 280
Query: 125 ---------ETELVTRDMAIEEL-------KLRFPLIAKPLEANGSDKSHQMYLIFDNEG 168
E+ V+ AI L +P + P + NEG
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN-------NEG 333
Query: 169 LEVLEAPIL---------LQEFVN----HGGIIFKVY-----------VAG--------- 195
+ +P+L +Q++VN H +V V+G
Sbjct: 334 VP---SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 196 SSVKCVKRKSLPDI-----SEEKMKSLKGFLPFSQISS--NS---VDADEEV--DLEKTE 243
+++ K S D SE K+K FLP ++S +S V A + + DL K
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP---VASPFHSHLLVPASDLINKDLVKNN 447
Query: 244 MPREGFVVELS------------RALREALGLNLFNFDLI 271
+ ++ R L ++ + D I
Sbjct: 448 VSFNA--KDIQIPVYDTFDGSDLRVLSGSISERI--VDCI 483
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.8
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 13/31 (41%)
Query: 61 KLYGPDWTQQLQQFSSRNPDVRIIDPPESIE 91
KLY D S+ P + I ++E
Sbjct: 30 KLYADD--------SA--PALAI---KATME 47
Score = 28.0 bits (61), Expect = 3.1
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 5/20 (25%)
Query: 15 VFAPNKEQTVIQPSLITKAT 34
++A + P+L KAT
Sbjct: 31 LYADDS-----APALAIKAT 45
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear,
recombination-recombination complex, DN protein-protein
binding complex; HET: DNA; 5.50A {Homo sapiens}
Length = 186
Score = 28.6 bits (63), Expect = 2.3
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 233 ADEEVDLE--KTEMPREGFVVELSRAL-REALGLNLFNFDLIRDAGE 276
++ E+ E M + +V EL +AL A +++ F+ +++
Sbjct: 77 SESEISQEADDMAMEKGKYVGELRKALLSGAGPADVYTFNFSKESCY 123
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 28.8 bits (65), Expect = 2.5
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 29/109 (26%)
Query: 86 PPESIERLHNRDSMLEVVSRLKIELNKEKVSVPN-QAVVSETELVTRDMAIEELKLRFPL 144
E+ ++ M E K V+ V +E EL A+E LK P+
Sbjct: 100 NEEAAIMCGDKYKMKEA-------FKKYNVNTARHFVVRNENELKN---ALENLK--LPV 147
Query: 145 IAKPLEANGSDKSHQMYLIFDNEGLEVLEA-----------PILLQEFV 182
I K + G S +Y+ E E ++ +++EF+
Sbjct: 148 IVKATDLQG---SKGIYIAKKEE--EAIDGFNETMNLTKRDYCIVEEFI 191
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 28.3 bits (64), Expect = 2.9
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 12/54 (22%)
Query: 59 MHKLYGPDWTQQLQQFSSRNPDVRIIDPPESIERLHNRDSMLEVVSRLKIELNK 112
MH + +Q+ R P + ++D ML I L +
Sbjct: 55 MHSKNIRNEDEQI-----RVPRGKYFCLNTKFPNGLDKDIML-------IRLRR 96
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 27.0 bits (60), Expect = 4.2
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 232 DADEEVDLEKTEMPREGFVVELSRALREALGLNL 265
D D +++ +K +P V L + + +G+++
Sbjct: 4 DLDYDIEEDKLGIPTVPGKVTLQKDAQNLIGISI 37
>3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW
YORK structura genomics research consortium, TIM barrel;
HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A
3t9p_A 3t8q_A
Length = 388
Score = 28.0 bits (63), Expect = 4.6
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 231 VDADEEVDLEKTEMPREGFVVELSRALREALGLNLFNFDLIRDA 274
V A EV + E P E+ +R LG + DL+ DA
Sbjct: 168 VRAGAEVGRNRDEWPGR--TEEIIPTMRRELG---DDVDLLIDA 206
>2hft_A Human tissue factor; coagulation factor; 1.69A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1jps_T 1ahw_C 1boy_A 1tfh_A 1wtg_T*
1wss_T* 1wqv_T* 1wun_T* 1wv7_T* 2zp0_T* 2zwl_T* 2zzu_T*
1z6j_T* 2aei_T* 2flb_T* 2b7d_T* 2f9b_T* 1o5d_T* 2flr_T*
1w0y_T* ...
Length = 218
Score = 27.4 bits (60), Expect = 6.0
Identities = 8/53 (15%), Positives = 21/53 (39%)
Query: 16 FAPNKEQTVIQPSLITKATEQGIGLIRIDPDKPLTEQGPFDCIMHKLYGPDWT 68
F P E + QP++ + + ++ ++ L + + ++G D
Sbjct: 100 FTPYLETNLGQPTIQSFEQVGTKVNVTVEDERTLVRRNNTFLSLRDVFGKDLI 152
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II,
nysgrc., structural genomics, protein structure
initiative; 1.87A {Archaeoglobus fulgidus}
Length = 305
Score = 27.0 bits (59), Expect = 8.7
Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 47/195 (24%)
Query: 139 KLRFPLIAKPLEANGSDKSHQMYLIFDNEGLEVLEAPILLQEFVNHGGIIFKVYVAGSS- 197
L I KP A + + + + QEF+ GI V +A
Sbjct: 131 PLDCKFIIKPRTACA---GEGIGFSDE------VPDGHIAQEFIE--GINLSVSLAVGED 179
Query: 198 --VKCVKRKSLPDISEEKMKSLKGFLPFSQISSNSVDADEEVDLEKTEMPREGFVVELSR 255
V + + + + V A ++++ V E R
Sbjct: 180 VKCLSVNEQIINNFRY---------------AGAVVPARISDEVKRE------VVEEAVR 218
Query: 256 ALREALGLN-LFNFDLIRDAGERDGYLVIDIN-----YLPGYAKLPGYE--TLLMDFFLN 307
A+ GLN D++ D VI+IN + +++ G LL +
Sbjct: 219 AVECVEGLNGYVGVDIVYS----DQPYVIEINARLTTPVVAFSRAYGASVADLLAGGEVK 274
Query: 308 VAKSKAVEEVTSGDE 322
+ + V + S ++
Sbjct: 275 HVRRQMVRKSKSAEK 289
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.386
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,015,381
Number of extensions: 310185
Number of successful extensions: 797
Number of sequences better than 10.0: 1
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 22
Length of query: 330
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 236
Effective length of database: 4,077,219
Effective search space: 962223684
Effective search space used: 962223684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.8 bits)