RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 047754
         (330 letters)



>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
          Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 25.8 bits (57), Expect = 0.82
 Identities = 7/17 (41%), Positives = 11/17 (64%), Gaps = 2/17 (11%)

Query: 4  HEGQPYCKIGY--VFAP 18
           EG+ YC+  +  +FAP
Sbjct: 18 FEGRKYCEHDFQMLFAP 34


>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
          CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 49

 Score = 26.2 bits (58), Expect = 0.87
 Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 2/17 (11%)

Query: 4  HEGQPYCKIGYV--FAP 18
           +G+ YCK  Y   F P
Sbjct: 17 KDGEIYCKGCYAKNFGP 33


>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId:
          9913]}
          Length = 149

 Score = 26.0 bits (56), Expect = 4.2
 Identities = 5/29 (17%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 58 IMHK-LYGPDWTQQLQQFSSRNPDVRIID 85
          ++++ L    W  +  +     P +R++D
Sbjct: 4  VLYRALVSTKWLAESVRAGKVGPGLRVLD 32


>d1ik9a1 b.59.1.1 (A:1-117) XRCC4, N-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 117

 Score = 25.5 bits (56), Expect = 5.6
 Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 243 EMPREGFVVELSRAL-REALGLNLFNFDLIRDAGE 276
            M +  +V EL +AL   A   +++ F+  +++  
Sbjct: 60  AMEKGKYVGELRKALLSGAGPADVYTFNFSKESAY 94


>d2p7ja1 d.110.6.2 (A:181-273) GGDEF family protein VP0354 {Vibrio
           parahaemolyticus [TaxId: 670]}
          Length = 93

 Score = 24.7 bits (54), Expect = 7.2
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 264 NLFNFDLIRDAGERDGYLVIDIN 286
           +L  F  I+       +L+ID++
Sbjct: 65  HLIAFSSIKFVSNEPLHLIIDLS 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,200,504
Number of extensions: 56569
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 8
Length of query: 330
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,226,816
Effective search space: 299343104
Effective search space used: 299343104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)