BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047755
         (90 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q18E49|DNLJ_HALWD DNA ligase OS=Haloquadratum walsbyi (strain DSM 16790) GN=ligA PE=3
           SV=3
          Length = 747

 Score = 33.9 bits (76), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 39  PEVRLTKANRTAGVLENFDEGYRYKENALRRFVRDKPPQIMPSVNEFFSRD 89
           PEV  T A   AG  +NFD      E ALR  + D  P +   ++EFF+ +
Sbjct: 587 PEVGPTIARNLAGTFDNFDAIIDADEAALRE-IEDIGPTVSTHISEFFTNE 636


>sp|O31632|METC_BACSU Cystathionine beta-lyase MetC OS=Bacillus subtilis (strain 168)
           GN=metC PE=1 SV=1
          Length = 390

 Score = 30.0 bits (66), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 24/45 (53%)

Query: 12  EVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENF 56
           ++Y L  A GA +G+    LV       +VRL KA++TA  L  F
Sbjct: 223 QLYKLQNAFGAVLGVQDCWLVLRGLKTLQVRLEKASQTAQRLAEF 267


>sp|Q7S7G7|CSN3_NEUCR COP9 signalosome complex subunit 3 OS=Neurospora crassa (strain
           ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
           987) GN=csn-3 PE=1 SV=2
          Length = 497

 Score = 29.3 bits (64), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 10  RPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLE 54
           +P +Y     +  A  +C M L   A+ NP+ +LT A  +A VL+
Sbjct: 172 KPIIYMPAKGMSTAQPLCDMSLPPPAYINPDSQLTDALTSAAVLQ 216


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,511,214
Number of Sequences: 539616
Number of extensions: 1200128
Number of successful extensions: 2400
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2398
Number of HSP's gapped (non-prelim): 5
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)