Query 047755
Match_columns 90
No_of_seqs 101 out of 192
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 02:49:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047755.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047755hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06522 B12D: NADH-ubiquinone 99.9 4.4E-26 9.6E-31 145.7 4.1 72 8-88 1-72 (73)
2 PF06679 DUF1180: Protein of u 59.3 15 0.00034 26.8 3.7 38 15-55 97-134 (163)
3 PF05251 UPF0197: Uncharacteri 58.3 19 0.00042 23.4 3.6 30 9-38 11-42 (77)
4 PF14962 AIF-MLS: Mitochondria 57.4 3.5 7.5E-05 30.8 0.0 28 13-40 45-72 (180)
5 PF08216 CTNNBL: Catenin-beta- 56.6 7.1 0.00015 26.9 1.4 19 10-28 76-94 (108)
6 PF01307 Plant_vir_prot: Plant 51.0 13 0.00029 25.1 2.1 24 16-41 12-35 (104)
7 PF15114 UPF0640: Uncharacteri 50.1 10 0.00022 24.4 1.3 14 12-25 25-38 (69)
8 TIGR00847 ccoS cytochrome oxid 45.7 30 0.00066 20.8 2.8 23 13-35 7-29 (51)
9 PF13056 DUF3918: Protein of u 43.8 28 0.00061 20.4 2.4 16 18-33 7-22 (43)
10 TIGR03052 PS_I_psaI photosyste 41.8 46 0.00099 18.3 2.9 25 8-32 2-26 (31)
11 PF03672 UPF0154: Uncharacteri 40.2 63 0.0014 20.4 3.7 20 14-36 3-22 (64)
12 PF03597 CcoS: Cytochrome oxid 39.2 46 0.00099 19.4 2.8 23 13-35 6-28 (45)
13 KOG2931 Differentiation-relate 38.7 7.1 0.00015 31.6 -0.9 37 18-54 123-164 (326)
14 PF07444 Ycf66_N: Ycf66 protei 38.4 54 0.0012 21.5 3.4 25 16-42 9-33 (84)
15 PLN02949 transferase, transfer 37.6 37 0.00079 27.8 3.0 40 6-47 107-148 (463)
16 PRK13755 putative mercury tran 37.6 51 0.0011 23.7 3.4 23 12-34 52-74 (139)
17 PF14851 FAM176: FAM176 family 37.1 14 0.00031 26.8 0.5 26 2-27 10-35 (153)
18 PF08114 PMP1_2: ATPase proteo 36.7 50 0.0011 19.4 2.7 27 10-36 7-34 (43)
19 KOG2952 Cell cycle control pro 36.5 45 0.00098 27.4 3.3 36 10-45 42-77 (351)
20 PF03096 Ndr: Ndr family; Int 36.0 4.2 9E-05 32.1 -2.6 24 19-42 101-124 (283)
21 PF13400 Tad: Putative Flp pil 36.0 76 0.0016 17.8 3.4 22 13-34 11-32 (48)
22 CHL00186 psaI photosystem I su 34.7 72 0.0016 18.1 3.1 26 7-32 4-29 (36)
23 COG3766 Predicted membrane pro 34.3 33 0.00071 24.6 2.0 37 17-53 79-115 (133)
24 COG3592 Uncharacterized conser 34.2 19 0.00041 23.4 0.7 10 72-81 41-50 (74)
25 PF14880 COX14: Cytochrome oxi 34.2 65 0.0014 19.3 3.1 27 12-38 17-43 (59)
26 COG3763 Uncharacterized protei 34.1 41 0.0009 21.7 2.3 27 8-37 4-30 (71)
27 PRK11877 psaI photosystem I re 30.5 61 0.0013 18.5 2.3 29 4-32 5-33 (38)
28 PF12606 RELT: Tumour necrosis 30.4 1E+02 0.0022 18.4 3.4 10 13-22 6-15 (50)
29 PLN02777 photosystem I P subun 29.9 33 0.00071 25.5 1.4 19 22-40 130-148 (167)
30 PF14159 CAAD: CAAD domains of 29.8 65 0.0014 21.1 2.7 24 15-40 50-73 (90)
31 PF14898 DUF4491: Domain of un 29.8 69 0.0015 21.7 2.9 25 9-33 30-54 (94)
32 PF09919 DUF2149: Uncharacteri 29.8 46 0.00099 22.0 2.0 44 18-61 14-58 (92)
33 PF03896 TRAP_alpha: Transloco 29.3 81 0.0018 24.9 3.6 30 6-36 200-229 (285)
34 PF10661 EssA: WXG100 protein 28.9 80 0.0017 22.4 3.2 20 17-36 125-144 (145)
35 cd03806 GT1_ALG11_like This fa 28.9 59 0.0013 25.7 2.8 44 6-49 75-118 (419)
36 PF11196 DUF2834: Protein of u 27.8 82 0.0018 20.8 3.0 22 13-34 74-95 (97)
37 PRK11367 hypothetical protein; 27.3 19 0.00042 30.1 -0.1 23 13-35 6-28 (476)
38 PF15086 UPF0542: Uncharacteri 27.0 86 0.0019 20.4 2.9 19 13-35 30-48 (74)
39 cd00922 Cyt_c_Oxidase_IV Cytoc 26.3 99 0.0022 21.6 3.3 22 18-39 81-102 (136)
40 PF08285 DPM3: Dolichol-phosph 26.2 54 0.0012 21.6 1.9 44 13-61 39-82 (91)
41 PF06847 Arc_PepC_II: Archaeal 25.9 59 0.0013 21.4 2.0 24 6-30 66-89 (93)
42 PF09731 Mitofilin: Mitochondr 25.5 56 0.0012 27.1 2.2 27 12-42 7-33 (582)
43 PF11998 DUF3493: Protein of u 25.3 1.3E+02 0.0027 19.5 3.4 26 16-41 24-49 (75)
44 PF12732 YtxH: YtxH-like prote 24.7 98 0.0021 18.9 2.8 15 17-31 4-18 (74)
45 COG1563 Predicted subunit of t 24.3 1.3E+02 0.0028 20.2 3.4 30 15-44 32-61 (87)
46 PF14654 Epiglycanin_C: Mucin, 23.7 81 0.0018 21.8 2.4 23 13-35 22-45 (106)
47 TIGR00645 HI0507 conserved hyp 23.5 63 0.0014 23.7 2.0 28 5-35 11-38 (167)
48 PF02936 COX4: Cytochrome c ox 23.5 1.1E+02 0.0025 21.5 3.2 24 16-39 79-102 (142)
49 PF15050 SCIMP: SCIMP protein 23.2 1.8E+02 0.004 20.8 4.2 57 17-83 16-73 (133)
50 COG3765 WzzB Chain length dete 22.3 1.1E+02 0.0024 25.1 3.2 29 11-39 316-344 (347)
51 PRK01844 hypothetical protein; 21.9 1.2E+02 0.0027 19.5 2.8 13 25-37 18-30 (72)
52 PRK10381 LPS O-antigen length 21.8 1.2E+02 0.0026 24.5 3.4 29 11-39 338-366 (377)
53 PF13244 DUF4040: Domain of un 21.7 1.6E+02 0.0035 18.2 3.3 29 16-44 18-46 (70)
54 PF10269 Tmemb_185A: Transmemb 21.5 1E+02 0.0022 23.1 2.8 23 13-35 150-172 (238)
55 PRK11677 hypothetical protein; 21.3 89 0.0019 22.1 2.3 49 18-70 6-56 (134)
56 PF05216 UNC-50: UNC-50 family 21.1 1.6E+02 0.0035 22.8 3.8 21 17-37 94-114 (231)
57 PF12669 P12: Virus attachment 21.0 76 0.0016 19.2 1.7 15 24-38 8-23 (58)
58 PF15312 JSRP: Junctional sarc 20.7 1.8E+02 0.0038 18.4 3.3 22 16-37 15-36 (65)
59 PRK00523 hypothetical protein; 20.5 1.4E+02 0.003 19.3 2.8 13 24-36 18-30 (72)
60 PF08372 PRT_C: Plant phosphor 20.4 1.3E+02 0.0029 21.7 3.1 26 6-31 89-114 (156)
61 PF10171 DUF2366: Uncharacteri 20.4 1.4E+02 0.003 22.0 3.2 23 15-40 43-65 (173)
62 PF12286 DUF3622: Protein of u 20.3 46 0.001 21.5 0.6 21 54-74 41-61 (71)
63 PF15018 InaF-motif: TRP-inter 20.2 1.2E+02 0.0026 17.3 2.2 26 6-31 2-29 (38)
64 PF08195 TRI9: TRI9 protein; 20.1 44 0.00094 19.4 0.4 14 32-45 8-21 (43)
No 1
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=99.92 E-value=4.4e-26 Score=145.72 Aligned_cols=72 Identities=39% Similarity=0.561 Sum_probs=69.2
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHHHhcCCceeeecCCccccccchhhhchhhhhhHHHHHhhcCCCCCCcccccccC
Q 047755 8 WVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENALRRFVRDKPPQIMPSVNEFFS 87 (90)
Q Consensus 8 Wv~pel~PLf~~ig~a~~~a~~~~~R~l~~nPdVr~~k~~r~~~~~e~~~eg~~y~~h~~R~~~~~~~p~imp~~n~~f~ 87 (90)
|.+|||||||+|||+|+++|+|+++|+|++||||+|+|++| .+++++|++|..|||++.+. +|||.+|++ +
T Consensus 1 ~~~pel~PL~~~vg~a~~~a~~~~~r~l~~~PdV~~~k~~~-------~~pw~~~~~~~~~K~~~~~~-~~~~~~~~~-p 71 (73)
T PF06522_consen 1 KKHPELYPLFVIVGVAVGGATFYLYRLLLTNPDVRWNKKNR-------PEPWEKYKPHEQRKFYSINQ-DYMPLKNNF-P 71 (73)
T ss_pred CCCccccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCC-------cChhhhcCccccEEeecccc-ccccccccC-C
Confidence 89999999999999999999999999999999999999999 68899999999999999988 999999998 6
Q ss_pred C
Q 047755 88 R 88 (90)
Q Consensus 88 ~ 88 (90)
+
T Consensus 72 d 72 (73)
T PF06522_consen 72 D 72 (73)
T ss_pred C
Confidence 5
No 2
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=59.29 E-value=15 Score=26.77 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCceeeecCCccccccch
Q 047755 15 PLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLEN 55 (90)
Q Consensus 15 PLf~~ig~a~~~a~~~~~R~l~~nPdVr~~k~~r~~~~~e~ 55 (90)
-++|++|+.+.+..|+++|-+-... =.|+.|+.|++.+
T Consensus 97 ~~~Vl~g~s~l~i~yfvir~~R~r~---~~rktRkYgvl~~ 134 (163)
T PF06679_consen 97 ALYVLVGLSALAILYFVIRTFRLRR---RNRKTRKYGVLTT 134 (163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc---ccccceeecccCC
Confidence 4688899999999999999552211 1245567777654
No 3
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=58.32 E-value=19 Score=23.44 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=20.7
Q ss_pred cCcchhhHHHHH--HHHHHHHHHHHHHHHhcC
Q 047755 9 VRPEVYPLFGAL--GAAVGICAMQLVRNAWTN 38 (90)
Q Consensus 9 v~pel~PLf~~i--g~a~~~a~~~~~R~l~~n 38 (90)
|+|++||...++ ++|+...+++.....+++
T Consensus 11 V~p~~~p~La~vll~iGl~fta~Ffiyevts~ 42 (77)
T PF05251_consen 11 VNPALYPHLAVVLLAIGLFFTAWFFIYEVTST 42 (77)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 489999997665 455666677777766533
No 4
>PF14962 AIF-MLS: Mitochondria Localisation Sequence; PDB: 1M6I_A.
Probab=57.39 E-value=3.5 Score=30.83 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCc
Q 047755 13 VYPLFGALGAAVGICAMQLVRNAWTNPE 40 (90)
Q Consensus 13 l~PLf~~ig~a~~~a~~~~~R~l~~nPd 40 (90)
=+-.|++||+.+.++++|.+|.+..|..
T Consensus 45 N~~Y~l~vG~t~~gag~YaYkTv~~dq~ 72 (180)
T PF14962_consen 45 NMVYYLVVGVTVSGAGYYAYKTVKSDQA 72 (180)
T ss_dssp ----------------------------
T ss_pred eEEEEEEECeEEEeeEEEEEEeecchhH
Confidence 3457889999999999999998876643
No 5
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=56.56 E-value=7.1 Score=26.89 Aligned_cols=19 Identities=37% Similarity=0.653 Sum_probs=14.5
Q ss_pred CcchhhHHHHHHHHHHHHH
Q 047755 10 RPEVYPLFGALGAAVGICA 28 (90)
Q Consensus 10 ~pel~PLf~~ig~a~~~a~ 28 (90)
.|+|||.|+-.|+..++++
T Consensus 76 ~P~LYp~lv~l~~v~sL~~ 94 (108)
T PF08216_consen 76 APELYPELVELGAVPSLLG 94 (108)
T ss_pred ChhHHHHHHHcCCHHHHHH
Confidence 6899999999986554443
No 6
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=51.02 E-value=13 Score=25.10 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCce
Q 047755 16 LFGALGAAVGICAMQLVRNAWTNPEV 41 (90)
Q Consensus 16 Lf~~ig~a~~~a~~~~~R~l~~nPdV 41 (90)
|.+++|++++++.|.+.|+ +-|.|
T Consensus 12 l~~aiG~~lal~i~~ltr~--tlPhv 35 (104)
T PF01307_consen 12 LAAAIGVSLALIIFTLTRS--TLPHV 35 (104)
T ss_pred hHHHHHHHHHHHHHHhhcC--CCCCC
Confidence 5678899999999999985 56665
No 7
>PF15114 UPF0640: Uncharacterised protein family UPF0640
Probab=50.10 E-value=10 Score=24.42 Aligned_cols=14 Identities=50% Similarity=0.724 Sum_probs=11.4
Q ss_pred chhhHHHHHHHHHH
Q 047755 12 EVYPLFGALGAAVG 25 (90)
Q Consensus 12 el~PLf~~ig~a~~ 25 (90)
-.+|+|+++|+|+=
T Consensus 25 RFLP~FF~lGaalE 38 (69)
T PF15114_consen 25 RFLPLFFVLGAALE 38 (69)
T ss_pred hhhHHHHHhhhhhe
Confidence 36899999999863
No 8
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=45.70 E-value=30 Score=20.77 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 047755 13 VYPLFGALGAAVGICAMQLVRNA 35 (90)
Q Consensus 13 l~PLf~~ig~a~~~a~~~~~R~l 35 (90)
++|+-+++|+....+.+..+|+-
T Consensus 7 LIpiSl~l~~~~l~~f~Wavk~G 29 (51)
T TIGR00847 7 LIPISLLLGGVGLVAFLWSLKSG 29 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC
Confidence 68888888888888888877754
No 9
>PF13056 DUF3918: Protein of unknown function (DUF3918)
Probab=43.76 E-value=28 Score=20.45 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 047755 18 GALGAAVGICAMQLVR 33 (90)
Q Consensus 18 ~~ig~a~~~a~~~~~R 33 (90)
-++++|+|.++|.+.+
T Consensus 7 Slla~GaG~aAy~~A~ 22 (43)
T PF13056_consen 7 SLLAFGAGAAAYQMAQ 22 (43)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 3577888888888774
No 10
>TIGR03052 PS_I_psaI photosystem I reaction center subunit VIII. Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.
Probab=41.79 E-value=46 Score=18.26 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=20.7
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHH
Q 047755 8 WVRPEVYPLFGALGAAVGICAMQLV 32 (90)
Q Consensus 8 Wv~pel~PLf~~ig~a~~~a~~~~~ 32 (90)
|+|.=+.||...+-=|++++.++++
T Consensus 2 ~LPsI~VPlVglvfPai~Ma~lf~y 26 (31)
T TIGR03052 2 WLPSIFVPLVGLVFPAVFMALLFRY 26 (31)
T ss_pred CCceeehhHHHHHHHHHHHHHHHHh
Confidence 6677789999999888888887764
No 11
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=40.17 E-value=63 Score=20.36 Aligned_cols=20 Identities=20% Similarity=0.130 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 047755 14 YPLFGALGAAVGICAMQLVRNAW 36 (90)
Q Consensus 14 ~PLf~~ig~a~~~a~~~~~R~l~ 36 (90)
+.|.+++|++ ++||++|.-+
T Consensus 3 iilali~G~~---~Gff~ar~~~ 22 (64)
T PF03672_consen 3 IILALIVGAV---IGFFIARKYM 22 (64)
T ss_pred HHHHHHHHHH---HHHHHHHHHH
Confidence 3444444443 3445554443
No 12
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=39.19 E-value=46 Score=19.38 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 047755 13 VYPLFGALGAAVGICAMQLVRNA 35 (90)
Q Consensus 13 l~PLf~~ig~a~~~a~~~~~R~l 35 (90)
++|+-.++|++...+.+..+|+-
T Consensus 6 lip~sl~l~~~~l~~f~Wavk~G 28 (45)
T PF03597_consen 6 LIPVSLILGLIALAAFLWAVKSG 28 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC
Confidence 67888888888877777777743
No 13
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=38.71 E-value=7.1 Score=31.63 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCce-----eeecCCccccccc
Q 047755 18 GALGAAVGICAMQLVRNAWTNPEV-----RLTKANRTAGVLE 54 (90)
Q Consensus 18 ~~ig~a~~~a~~~~~R~l~~nPdV-----r~~k~~r~~~~~e 54 (90)
.+||+|+|..+|.+.|-++.+||- -++-...+.+..|
T Consensus 123 ~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gwie 164 (326)
T KOG2931|consen 123 SVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGWIE 164 (326)
T ss_pred eEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchHHH
Confidence 478999999999999999999993 3466666666554
No 14
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=38.42 E-value=54 Score=21.54 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcee
Q 047755 16 LFGALGAAVGICAMQLVRNAWTNPEVR 42 (90)
Q Consensus 16 Lf~~ig~a~~~a~~~~~R~l~~nPdVr 42 (90)
.++.+++++++.++|..|. ..|+|+
T Consensus 9 ~iLgi~l~~~~~~Ly~lr~--~~Pev~ 33 (84)
T PF07444_consen 9 YILGIILILGGLALYFLRF--FRPEVS 33 (84)
T ss_pred HHHHHHHHHHHHHHHHHHH--HCcchh
Confidence 4556677777778887774 478875
No 15
>PLN02949 transferase, transferring glycosyl groups
Probab=37.63 E-value=37 Score=27.80 Aligned_cols=40 Identities=25% Similarity=0.495 Sum_probs=26.0
Q ss_pred CcccCcchhhHHHHHHHHHHH--HHHHHHHHHhcCCceeeecCC
Q 047755 6 FKWVRPEVYPLFGALGAAVGI--CAMQLVRNAWTNPEVRLTKAN 47 (90)
Q Consensus 6 ~~Wv~pel~PLf~~ig~a~~~--a~~~~~R~l~~nPdVr~~k~~ 47 (90)
+.|+++.+||-|-.+|..+++ +++..++. .-|+|-+|--.
T Consensus 107 ~~~~~~~~~~~~t~~~~~~~~~~l~~~~~~~--~~p~v~vDt~~ 148 (463)
T PLN02949 107 RKWIEEETYPRFTMIGQSLGSVYLAWEALCK--FTPLYFFDTSG 148 (463)
T ss_pred ccccccccCCceehHHHHHHHHHHHHHHHHh--cCCCEEEeCCC
Confidence 579999999996666555543 33443332 36777776654
No 16
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=37.56 E-value=51 Score=23.71 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=17.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 047755 12 EVYPLFGALGAAVGICAMQLVRN 34 (90)
Q Consensus 12 el~PLf~~ig~a~~~a~~~~~R~ 34 (90)
-|+|||+.|.+..-+.+|+.-|+
T Consensus 52 ~LlPlFA~iALlanalgW~sHRQ 74 (139)
T PRK13755 52 TLLPLFAAIALLANALGWFSHRQ 74 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888888777664
No 17
>PF14851 FAM176: FAM176 family
Probab=37.09 E-value=14 Score=26.78 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=18.9
Q ss_pred CCCCCcccCcchhhHHHHHHHHHHHH
Q 047755 2 GGSSFKWVRPEVYPLFGALGAAVGIC 27 (90)
Q Consensus 2 ~~~~~~Wv~pel~PLf~~ig~a~~~a 27 (90)
|+++..|=.||=+=|++++||.+|+.
T Consensus 10 aaya~I~~~PE~~aLYFv~gVC~GLl 35 (153)
T PF14851_consen 10 AAYAHIRDNPERFALYFVSGVCAGLL 35 (153)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 45566677899888888877766653
No 18
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=36.72 E-value=50 Score=19.40 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=18.0
Q ss_pred CcchhhHHHHHHHH-HHHHHHHHHHHHh
Q 047755 10 RPEVYPLFGALGAA-VGICAMQLVRNAW 36 (90)
Q Consensus 10 ~pel~PLf~~ig~a-~~~a~~~~~R~l~ 36 (90)
|-.+|=.|+.+|++ ++..+.+.+|+..
T Consensus 7 p~GVIlVF~lVglv~i~iva~~iYRKw~ 34 (43)
T PF08114_consen 7 PGGVILVFCLVGLVGIGIVALFIYRKWQ 34 (43)
T ss_pred CCCeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777754 4566777888764
No 19
>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]
Probab=36.50 E-value=45 Score=27.36 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=20.4
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhcCCceeeec
Q 047755 10 RPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTK 45 (90)
Q Consensus 10 ~pel~PLf~~ig~a~~~a~~~~~R~l~~nPdVr~~k 45 (90)
+-.++|+|+++|+.....+.-++..--.=-|++++-
T Consensus 42 ~~~vlp~f~i~g~vFipiGv~l~~as~~v~Ei~i~Y 77 (351)
T KOG2952|consen 42 PRTVLPLFFIIGVVFLPIGVGLLFASSKVIEITIRY 77 (351)
T ss_pred cchHHHHHHHHHHHHHhhhhheeEeecceEEEEEec
Confidence 457999999999865444333332111223555555
No 20
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=36.04 E-value=4.2 Score=32.09 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcee
Q 047755 19 ALGAAVGICAMQLVRNAWTNPEVR 42 (90)
Q Consensus 19 ~ig~a~~~a~~~~~R~l~~nPdVr 42 (90)
+||+|+|+.++.++|.++.+|+-.
T Consensus 101 vIg~GvGAGAnIL~rfAl~~p~~V 124 (283)
T PF03096_consen 101 VIGFGVGAGANILARFALKHPERV 124 (283)
T ss_dssp EEEEEETHHHHHHHHHHHHSGGGE
T ss_pred EEEEeeccchhhhhhccccCccce
Confidence 578888999999999999999854
No 21
>PF13400 Tad: Putative Flp pilus-assembly TadE/G-like
Probab=36.00 E-value=76 Score=17.80 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 047755 13 VYPLFGALGAAVGICAMQLVRN 34 (90)
Q Consensus 13 l~PLf~~ig~a~~~a~~~~~R~ 34 (90)
++|+++++|+++-..-.+..|.
T Consensus 11 ~~~~l~~~~~~id~~~~~~~r~ 32 (48)
T PF13400_consen 11 LVPLLLLIGLAIDVGRAYLART 32 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777776666666664
No 22
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=34.69 E-value=72 Score=18.05 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=21.5
Q ss_pred cccCcchhhHHHHHHHHHHHHHHHHH
Q 047755 7 KWVRPEVYPLFGALGAAVGICAMQLV 32 (90)
Q Consensus 7 ~Wv~pel~PLf~~ig~a~~~a~~~~~ 32 (90)
-|+|.=+.||...+-=|++++.++++
T Consensus 4 s~LPsI~VPlVGlvfPai~Ma~lf~y 29 (36)
T CHL00186 4 SNLPSILVPLVGLVFPAIAMASLFLY 29 (36)
T ss_pred ccCchhHHhHHHHHHHHHHHHHHHHH
Confidence 46788899999999888888887764
No 23
>COG3766 Predicted membrane protein [Function unknown]
Probab=34.28 E-value=33 Score=24.62 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeeecCCcccccc
Q 047755 17 FGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVL 53 (90)
Q Consensus 17 f~~ig~a~~~a~~~~~R~l~~nPdVr~~k~~r~~~~~ 53 (90)
..++|+.+-..+|+.+|.++.|=|.++...|.+.|.+
T Consensus 79 Wg~~~~vvqLl~f~i~~~l~p~l~~~I~ngn~AaG~~ 115 (133)
T COG3766 79 WGAIALVVQLLVFFIVRLLMPDLDEKIENGNVAAGFI 115 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccHHHHhcCcchHHHH
Confidence 4678888899999999999998888888888877754
No 24
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=34.23 E-value=19 Score=23.39 Aligned_cols=10 Identities=40% Similarity=0.710 Sum_probs=8.4
Q ss_pred hcCCCCCCcc
Q 047755 72 RDKPPQIMPS 81 (90)
Q Consensus 72 ~~~~p~imp~ 81 (90)
.+++|+|||.
T Consensus 41 ~~rkPWI~Pd 50 (74)
T COG3592 41 LGRKPWIMPD 50 (74)
T ss_pred cCCCCccCCC
Confidence 5788999996
No 25
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=34.17 E-value=65 Score=19.33 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=22.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcC
Q 047755 12 EVYPLFGALGAAVGICAMQLVRNAWTN 38 (90)
Q Consensus 12 el~PLf~~ig~a~~~a~~~~~R~l~~n 38 (90)
-++-|+.+.+.|.+++++..++....+
T Consensus 17 tV~~Lig~T~~~g~~~~~~~y~~~~~~ 43 (59)
T PF14880_consen 17 TVLGLIGFTVYGGGLTVYTVYSYFKYN 43 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888899999999998887665
No 26
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.11 E-value=41 Score=21.71 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=14.9
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHHHhc
Q 047755 8 WVRPEVYPLFGALGAAVGICAMQLVRNAWT 37 (90)
Q Consensus 8 Wv~pel~PLf~~ig~a~~~a~~~~~R~l~~ 37 (90)
|+---+++|...+|+.+| ||++|+.+.
T Consensus 4 ~lail~ivl~ll~G~~~G---~fiark~~~ 30 (71)
T COG3763 4 WLAILLIVLALLAGLIGG---FFIARKQMK 30 (71)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 443345555555555444 777776653
No 27
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=30.47 E-value=61 Score=18.55 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=23.4
Q ss_pred CCCcccCcchhhHHHHHHHHHHHHHHHHH
Q 047755 4 SSFKWVRPEVYPLFGALGAAVGICAMQLV 32 (90)
Q Consensus 4 ~~~~Wv~pel~PLf~~ig~a~~~a~~~~~ 32 (90)
++--|+|.=+.||...+-=|++++..+++
T Consensus 5 ~aas~LPsI~VPlVGlvfPai~Mallf~y 33 (38)
T PRK11877 5 FAASWLPWIFVPLVGWVFPAVFMVLLGRY 33 (38)
T ss_pred HhHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 34468888899999999888888877654
No 28
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=30.37 E-value=1e+02 Score=18.45 Aligned_cols=10 Identities=20% Similarity=0.534 Sum_probs=7.4
Q ss_pred hhhHHHHHHH
Q 047755 13 VYPLFGALGA 22 (90)
Q Consensus 13 l~PLf~~ig~ 22 (90)
++|+|+++|+
T Consensus 6 iV~i~iv~~l 15 (50)
T PF12606_consen 6 IVSIFIVMGL 15 (50)
T ss_pred HHHHHHHHHH
Confidence 6788877766
No 29
>PLN02777 photosystem I P subunit (PSI-P)
Probab=29.94 E-value=33 Score=25.47 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhcCCc
Q 047755 22 AAVGICAMQLVRNAWTNPE 40 (90)
Q Consensus 22 ~a~~~a~~~~~R~l~~nPd 40 (90)
+|++..+||.+|+|++.+|
T Consensus 130 VGigYs~WF~yRyLLfke~ 148 (167)
T PLN02777 130 VGIGYTGWFAYKNLVFKPD 148 (167)
T ss_pred hhhhhhhhhhhhHhcCccc
Confidence 3556678999999987765
No 30
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=29.84 E-value=65 Score=21.07 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCc
Q 047755 15 PLFGALGAAVGICAMQLVRNAWTNPE 40 (90)
Q Consensus 15 PLf~~ig~a~~~a~~~~~R~l~~nPd 40 (90)
|+|=.| |++-.+++.+|+|+..++
T Consensus 50 ~llElv--Glgyt~wF~~ryLL~~~~ 73 (90)
T PF14159_consen 50 GLLELV--GLGYTGWFVYRYLLFAEN 73 (90)
T ss_pred HHHHHH--HHHHHhHHHHHHHcChHh
Confidence 444444 556789999999987654
No 31
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=29.82 E-value=69 Score=21.70 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=19.6
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHH
Q 047755 9 VRPEVYPLFGALGAAVGICAMQLVR 33 (90)
Q Consensus 9 v~pel~PLf~~ig~a~~~a~~~~~R 33 (90)
.-.-.+|+|.++|++...+++++.-
T Consensus 30 fg~~~W~~FL~~Gi~~~~~Sl~~~~ 54 (94)
T PF14898_consen 30 FGTRIWPIFLLAGIACIIASLFVSN 54 (94)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHcc
Confidence 3345789999999999988877644
No 32
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=29.79 E-value=46 Score=22.03 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceeeecCCccccccch-hhhchh
Q 047755 18 GALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLEN-FDEGYR 61 (90)
Q Consensus 18 ~~ig~a~~~a~~~~~R~l~~nPdVr~~k~~r~~~~~e~-~~eg~~ 61 (90)
++||+=++++..+..-.++.+.|+...|++.+....-- .++|++
T Consensus 14 fav~llvalv~~~n~~~~~s~~~~t~~~~~~~~~~eii~~k~g~e 58 (92)
T PF09919_consen 14 FAVGLLVALVMSWNMQEVFSDEDVTIVKNPGQPNMEIIEVKKGQE 58 (92)
T ss_pred HHHHHHHHHHHhcCCccccccccceeeccCCcccceeeeccCCcC
Confidence 33333333333333333346778877776655442211 255554
No 33
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=29.25 E-value=81 Score=24.86 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=21.0
Q ss_pred CcccCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 047755 6 FKWVRPEVYPLFGALGAAVGICAMQLVRNAW 36 (90)
Q Consensus 6 ~~Wv~pel~PLf~~ig~a~~~a~~~~~R~l~ 36 (90)
.-|++||++=|++++.+. +++++|...+++
T Consensus 200 ~~~~D~e~iFLY~~l~a~-~~l~l~~~~~~l 229 (285)
T PF03896_consen 200 ESGFDPETIFLYLFLAAL-GVLGLYFVYQFL 229 (285)
T ss_pred CCCcChhhhhHHHHHHHH-HHHHHHHHHHHH
Confidence 357899999999887654 445555555554
No 34
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=28.90 E-value=80 Score=22.40 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 047755 17 FGALGAAVGICAMQLVRNAW 36 (90)
Q Consensus 17 f~~ig~a~~~a~~~~~R~l~ 36 (90)
++.+-+++|+..|+..|+++
T Consensus 125 i~g~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 125 IGGILLAICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33344677888999999875
No 35
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=28.85 E-value=59 Score=25.68 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=31.6
Q ss_pred CcccCcchhhHHHHHHHHHHHHHHHHHHHHhcCCceeeecCCcc
Q 047755 6 FKWVRPEVYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRT 49 (90)
Q Consensus 6 ~~Wv~pel~PLf~~ig~a~~~a~~~~~R~l~~nPdVr~~k~~r~ 49 (90)
..|+++..+|-|..++-+++.+...+-...-..|||-++...=.
T Consensus 75 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~ 118 (419)
T cd03806 75 RKLVEASTYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYP 118 (419)
T ss_pred eeeeccccCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 47889999999888888777655554332244899999887433
No 36
>PF11196 DUF2834: Protein of unknown function (DUF2834); InterPro: IPR021362 This is a bacterial family of uncharacterised proteins.
Probab=27.82 E-value=82 Score=20.84 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 047755 13 VYPLFGALGAAVGICAMQLVRN 34 (90)
Q Consensus 13 l~PLf~~ig~a~~~a~~~~~R~ 34 (90)
.+|+-+++|++.+..-|...|.
T Consensus 74 ~i~~t~~vgvs~glPLyL~lRe 95 (97)
T PF11196_consen 74 YIVLTFFVGVSFGLPLYLYLRE 95 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999888874
No 37
>PRK11367 hypothetical protein; Provisional
Probab=27.32 E-value=19 Score=30.07 Aligned_cols=23 Identities=13% Similarity=-0.101 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 047755 13 VYPLFGALGAAVGICAMQLVRNA 35 (90)
Q Consensus 13 l~PLf~~ig~a~~~a~~~~~R~l 35 (90)
..=++|++|++-++++||+..++
T Consensus 6 a~gVIVaLga~wtGgsWYTGk~i 28 (476)
T PRK11367 6 ATGVIVALAVIWGGGTWYTGTQI 28 (476)
T ss_pred hhhhhhhhhhhhccccceechHH
Confidence 46678999999999999999876
No 38
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=27.05 E-value=86 Score=20.40 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 047755 13 VYPLFGALGAAVGICAMQLVRNA 35 (90)
Q Consensus 13 l~PLf~~ig~a~~~a~~~~~R~l 35 (90)
|.|||++.|+ ++|.+.+.+
T Consensus 30 LtPlfiisa~----lSwkLaK~i 48 (74)
T PF15086_consen 30 LTPLFIISAV----LSWKLAKAI 48 (74)
T ss_pred HhHHHHHHHH----HHHHHHHHH
Confidence 6788877644 677777755
No 39
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=26.26 E-value=99 Score=21.64 Aligned_cols=22 Identities=14% Similarity=-0.085 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 047755 18 GALGAAVGICAMQLVRNAWTNP 39 (90)
Q Consensus 18 ~~ig~a~~~a~~~~~R~l~~nP 39 (90)
+++++++++.+|...|....+|
T Consensus 81 ~~~~i~~s~~~~~~~r~~~~~~ 102 (136)
T cd00922 81 VLAFIGITGVIFGLQRAFVYGP 102 (136)
T ss_pred HHHHHHHHHHHHHHHHHhccCC
Confidence 5667788888999999887443
No 40
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=26.18 E-value=54 Score=21.63 Aligned_cols=44 Identities=9% Similarity=-0.010 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCceeeecCCccccccchhhhchh
Q 047755 13 VYPLFGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYR 61 (90)
Q Consensus 13 l~PLf~~ig~a~~~a~~~~~R~l~~nPdVr~~k~~r~~~~~e~~~eg~~ 61 (90)
..|+++.+.+|+=+.+-..+|.++.| | ...-..++.++.+|+++
T Consensus 39 ~lP~~~Lv~fG~Ysl~~lgy~v~tFn-D----cpeA~~eL~~eI~eAK~ 82 (91)
T PF08285_consen 39 YLPFYALVSFGCYSLFTLGYGVATFN-D----CPEAAKELQKEIKEAKA 82 (91)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhhccC-C----CHHHHHHHHHHHHHHHH
Confidence 57889999888877777777766555 3 22333333344555543
No 41
>PF06847 Arc_PepC_II: Archaeal Peptidase A24 C-terminus Type II; InterPro: IPR009655 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This region is of unknown function, which is found at the C terminus of archaeal preflagellin aspartic acid signal peptidases []. The preflagellin peptidase is a membrane-bound enzyme topologically similar to its counterpart in the type IV pilus system (prepilin peptidase); the two enzymes utilizing the same catalytic mechanism []. The preflagellin peptidase is required for the removal of the leader peptide from archaeal flagellin []. Preflagellin aspartic acid signal peptidases belong to the MEROPS peptidase family A24B (preflagellin peptidase, clan AD).; GO: 0008233 peptidase activity; PDB: 3S0X_B.
Probab=25.94 E-value=59 Score=21.43 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=13.3
Q ss_pred CcccCcchhhHHHHHHHHHHHHHHH
Q 047755 6 FKWVRPEVYPLFGALGAAVGICAMQ 30 (90)
Q Consensus 6 ~~Wv~pel~PLf~~ig~a~~~a~~~ 30 (90)
..||-|. +|..+.|.+|...|.++
T Consensus 66 ~VWVTpg-iPFlvpIt~G~iial~~ 89 (93)
T PF06847_consen 66 TVWVTPG-IPFLVPITAGYIIALIY 89 (93)
T ss_dssp EEEE------THHHHHHHHHHHHHH
T ss_pred cEEEeCC-CcCHHHHHHHHHHHHHh
Confidence 4799877 47777777776666543
No 42
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=25.52 E-value=56 Score=27.12 Aligned_cols=27 Identities=15% Similarity=-0.082 Sum_probs=20.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcCCcee
Q 047755 12 EVYPLFGALGAAVGICAMQLVRNAWTNPEVR 42 (90)
Q Consensus 12 el~PLf~~ig~a~~~a~~~~~R~l~~nPdVr 42 (90)
-|+-+++++|+|.||++||.+. ||+++
T Consensus 7 ~l~~~~l~~~~~ygG~v~yA~~----n~~f~ 33 (582)
T PF09731_consen 7 FLLYTTLLGGVGYGGGVYYAKQ----NDNFR 33 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc----ChHHH
Confidence 3566788888999999988765 66654
No 43
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=25.29 E-value=1.3e+02 Score=19.46 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCce
Q 047755 16 LFGALGAAVGICAMQLVRNAWTNPEV 41 (90)
Q Consensus 16 Lf~~ig~a~~~a~~~~~R~l~~nPdV 41 (90)
+|++.|+..+.+.+..+=.+...|+|
T Consensus 24 ~y~a~~aSa~iG~~i~~~rl~a~~~l 49 (75)
T PF11998_consen 24 FYGAFGASAGIGLFIFLFRLIAGPDL 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccH
Confidence 45566666666666555556667766
No 44
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=24.75 E-value=98 Score=18.90 Aligned_cols=15 Identities=40% Similarity=0.142 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q 047755 17 FGALGAAVGICAMQL 31 (90)
Q Consensus 17 f~~ig~a~~~a~~~~ 31 (90)
.+++|+++|.++.++
T Consensus 4 g~l~Ga~~Ga~~glL 18 (74)
T PF12732_consen 4 GFLAGAAAGAAAGLL 18 (74)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666554
No 45
>COG1563 Predicted subunit of the Multisubunit Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=24.29 E-value=1.3e+02 Score=20.16 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCceeee
Q 047755 15 PLFGALGAAVGICAMQLVRNAWTNPEVRLT 44 (90)
Q Consensus 15 PLf~~ig~a~~~a~~~~~R~l~~nPdVr~~ 44 (90)
||=++|+.|+-++...+.-.++.-|||-++
T Consensus 32 ll~AvI~~~~lsll~ally~ll~APDVAlT 61 (87)
T COG1563 32 LLNAVIASGVLSLLAALLYTLLLAPDVALT 61 (87)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCChHHHH
Confidence 455677777777777777788899999765
No 46
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=23.66 E-value=81 Score=21.78 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=15.3
Q ss_pred hhhHH-HHHHHHHHHHHHHHHHHH
Q 047755 13 VYPLF-GALGAAVGICAMQLVRNA 35 (90)
Q Consensus 13 l~PLf-~~ig~a~~~a~~~~~R~l 35 (90)
||-|+ |++++|+....|+|+|+.
T Consensus 22 LItLasVvvavGl~aGLfFcvR~~ 45 (106)
T PF14654_consen 22 LITLASVVVAVGLFAGLFFCVRNS 45 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44444 445667777788899974
No 47
>TIGR00645 HI0507 conserved hypothetical transmembrane protein. This conserved hypothetical protein with four predicted transmembrane regions is found in E. coli, Haemophilus influenzae, and Helicobacter pylori, among completed genomes. A similar protein from Aquifex aeolicus appears to share a central region of homology and a similar overall arrangement of hydrophobic stretches, and forms a bidirectional best hit with several members of the seed alignment. However, it is uncertain whether the observed similarity represents full-length homology and/or equivalent function, and so it is excluded from the seed and scores below the trusted cutoff.
Probab=23.55 E-value=63 Score=23.71 Aligned_cols=28 Identities=14% Similarity=0.511 Sum_probs=20.7
Q ss_pred CCcccCcchhhHHHHHHHHHHHHHHHHHHHH
Q 047755 5 SFKWVRPEVYPLFGALGAAVGICAMQLVRNA 35 (90)
Q Consensus 5 ~~~Wv~pel~PLf~~ig~a~~~a~~~~~R~l 35 (90)
+.||+ +.|+++.+.+|.+..++.....+
T Consensus 11 ~SRwl---l~pvy~gLi~a~~l~~~~f~~el 38 (167)
T TIGR00645 11 ASRWL---LAPIYLGLSLTLVILSYKFIKEL 38 (167)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46898 99999999888887665544444
No 48
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=23.49 E-value=1.1e+02 Score=21.50 Aligned_cols=24 Identities=8% Similarity=-0.190 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Q 047755 16 LFGALGAAVGICAMQLVRNAWTNP 39 (90)
Q Consensus 16 Lf~~ig~a~~~a~~~~~R~l~~nP 39 (90)
..++++++++++.|...|.....|
T Consensus 79 ~~~~~~i~~s~~l~~~~r~~~~~~ 102 (142)
T PF02936_consen 79 GGVFIFIGFSVLLFIWQRSYVYPP 102 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 356677788888899999776544
No 49
>PF15050 SCIMP: SCIMP protein
Probab=23.22 E-value=1.8e+02 Score=20.78 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCceeeecCCccccccchhhhchhhhhhHHHHHhhcCCCCCCcccc
Q 047755 17 FGALGAAVGICAMQLVRNAWT-NPEVRLTKANRTAGVLENFDEGYRYKENALRRFVRDKPPQIMPSVN 83 (90)
Q Consensus 17 f~~ig~a~~~a~~~~~R~l~~-nPdVr~~k~~r~~~~~e~~~eg~~y~~h~~R~~~~~~~p~imp~~n 83 (90)
+++|++++|+..|-+.|.+++ ...-.+.|--++.+ -+|-+.|. + +.+++|--.|-|+
T Consensus 16 II~vS~~lglIlyCvcR~~lRqGkkweiakp~k~~~----rdeEkmYE-N-----v~n~~~~~LPpLP 73 (133)
T PF15050_consen 16 IILVSVVLGLILYCVCRWQLRQGKKWEIAKPLKQKQ----RDEEKMYE-N-----VLNQSPVQLPPLP 73 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccceeccchhhhc----ccHHHHHH-H-----hhcCCcCCCCCCC
Confidence 456677777766665665543 33333333322222 34444554 3 4555655555553
No 50
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=22.31 E-value=1.1e+02 Score=25.12 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=23.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 047755 11 PEVYPLFGALGAAVGICAMQLVRNAWTNP 39 (90)
Q Consensus 11 pel~PLf~~ig~a~~~a~~~~~R~l~~nP 39 (90)
..++=++.+++.|+.+|.+.++|+.+..+
T Consensus 316 rA~ilil~~LiGgm~g~g~vL~R~~lk~~ 344 (347)
T COG3765 316 RAIILILGALIGGMLGAGVVLLRNALKKY 344 (347)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677788888999999999999987653
No 51
>PRK01844 hypothetical protein; Provisional
Probab=21.90 E-value=1.2e+02 Score=19.52 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhc
Q 047755 25 GICAMQLVRNAWT 37 (90)
Q Consensus 25 ~~a~~~~~R~l~~ 37 (90)
+..+||.+|+.+.
T Consensus 18 ~~~Gff~ark~~~ 30 (72)
T PRK01844 18 VALGFFIARKYMM 30 (72)
T ss_pred HHHHHHHHHHHHH
Confidence 3445666665543
No 52
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=21.76 E-value=1.2e+02 Score=24.50 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=22.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 047755 11 PEVYPLFGALGAAVGICAMQLVRNAWTNP 39 (90)
Q Consensus 11 pel~PLf~~ig~a~~~a~~~~~R~l~~nP 39 (90)
..||=++..+..++.||++.++|++++..
T Consensus 338 r~lIlvl~~llG~~lg~~~vL~r~~~r~~ 366 (377)
T PRK10381 338 KALIVILAALIGGMLACGFVLLRHAMRSR 366 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777788899999999998653
No 53
>PF13244 DUF4040: Domain of unknown function (DUF4040)
Probab=21.72 E-value=1.6e+02 Score=18.19 Aligned_cols=29 Identities=24% Similarity=0.181 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeee
Q 047755 16 LFGALGAAVGICAMQLVRNAWTNPEVRLT 44 (90)
Q Consensus 16 Lf~~ig~a~~~a~~~~~R~l~~nPdVr~~ 44 (90)
+-.++..|+.+....+.-.++.-|||-++
T Consensus 18 l~avi~~~~~g~~~al~f~~l~APDVAlT 46 (70)
T PF13244_consen 18 LAAVIALGVFGFLIALLFVLLGAPDVALT 46 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 44556666666666666667788988543
No 54
>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome. The absence of the human TMEM185A protein does not necessarily lead to developmental delay, but might, in combination with other, currently unknown, factors. Alternatively, the TMEM185A protein is either redundant, or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B [].
Probab=21.54 E-value=1e+02 Score=23.14 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 047755 13 VYPLFGALGAAVGICAMQLVRNA 35 (90)
Q Consensus 13 l~PLf~~ig~a~~~a~~~~~R~l 35 (90)
-+|++++.|++...+.+++.+..
T Consensus 150 FiPl~i~~~~~~~~~~~~~i~~~ 172 (238)
T PF10269_consen 150 FIPLWIADGLAFLVCLYSIIMSI 172 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999998888776655
No 55
>PRK11677 hypothetical protein; Provisional
Probab=21.32 E-value=89 Score=22.07 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=20.8
Q ss_pred HHHHHHHHH-HHHHHHHHHhcCCceeeecCCcc-ccccchhhhchhhhhhHHHHH
Q 047755 18 GALGAAVGI-CAMQLVRNAWTNPEVRLTKANRT-AGVLENFDEGYRYKENALRRF 70 (90)
Q Consensus 18 ~~ig~a~~~-a~~~~~R~l~~nPdVr~~k~~r~-~~~~e~~~eg~~y~~h~~R~~ 70 (90)
+++|+.+|+ ++|++.| + +++.+ .++.+. ..+.+...|=+.|++-.--+|
T Consensus 6 a~i~livG~iiG~~~~R-~-~~~~~--~~q~~le~eLe~~k~ele~YkqeV~~HF 56 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMR-F-GNRKL--RQQQALQYELEKNKAELEEYRQELVSHF 56 (134)
T ss_pred HHHHHHHHHHHHHHHHh-h-ccchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443 4455556 3 45554 122221 222222345555665444444
No 56
>PF05216 UNC-50: UNC-50 family; InterPro: IPR007881 This family contains several eukaryotic transmembrane proteins which are related to the Caenorhabditis elegans protein UNC-50 Q10045 from SWISSPROT. A mammalian homologue, UNCL is a novel inner nuclear membrane protein that associates with RNA and is involved in the cell-surface expression of neuronal nicotinic receptors. UNCL plays a broader role because UNCL homologues are present in two yeast and a plant species, none of which express nicotinic receptors and it is also found in tissues that lack nicotinic receptors.
Probab=21.08 E-value=1.6e+02 Score=22.76 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 047755 17 FGALGAAVGICAMQLVRNAWT 37 (90)
Q Consensus 17 f~~ig~a~~~a~~~~~R~l~~ 37 (90)
+..+|+.++...|++..+.+.
T Consensus 94 fl~~G~~iAT~~w~~~Nr~l~ 114 (231)
T PF05216_consen 94 FLLVGLIIATIFWFVANRFLR 114 (231)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 345666667777788877776
No 57
>PF12669 P12: Virus attachment protein p12 family
Probab=21.04 E-value=76 Score=19.17 Aligned_cols=15 Identities=7% Similarity=0.107 Sum_probs=7.0
Q ss_pred HHHHHHHH-HHHHhcC
Q 047755 24 VGICAMQL-VRNAWTN 38 (90)
Q Consensus 24 ~~~a~~~~-~R~l~~n 38 (90)
+.++++|+ +|++..+
T Consensus 8 i~~~~~~v~~r~~~k~ 23 (58)
T PF12669_consen 8 ILAAVAYVAIRKFIKD 23 (58)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 33344443 4666544
No 58
>PF15312 JSRP: Junctional sarcoplasmic reticulum protein
Probab=20.71 E-value=1.8e+02 Score=18.45 Aligned_cols=22 Identities=27% Similarity=0.037 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 047755 16 LFGALGAAVGICAMQLVRNAWT 37 (90)
Q Consensus 16 Lf~~ig~a~~~a~~~~~R~l~~ 37 (90)
|++++.+++-+.+|++.|.+..
T Consensus 15 LvlAslValL~s~fq~~~dav~ 36 (65)
T PF15312_consen 15 LVLASLVALLGSGFQLCHDAVR 36 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 6788899999999999996654
No 59
>PRK00523 hypothetical protein; Provisional
Probab=20.53 E-value=1.4e+02 Score=19.30 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHh
Q 047755 24 VGICAMQLVRNAW 36 (90)
Q Consensus 24 ~~~a~~~~~R~l~ 36 (90)
.+..+||.+|+.+
T Consensus 18 G~~~Gffiark~~ 30 (72)
T PRK00523 18 GGIIGYFVSKKMF 30 (72)
T ss_pred HHHHHHHHHHHHH
Confidence 3345566666554
No 60
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=20.40 E-value=1.3e+02 Score=21.71 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=21.2
Q ss_pred CcccCcchhhHHHHHHHHHHHHHHHH
Q 047755 6 FKWVRPEVYPLFGALGAAVGICAMQL 31 (90)
Q Consensus 6 ~~Wv~pel~PLf~~ig~a~~~a~~~~ 31 (90)
..|-+|.+.-+|+++.++++.+.|++
T Consensus 89 lsWrdP~aT~lf~~~clv~avvly~v 114 (156)
T PF08372_consen 89 LSWRDPRATALFVVFCLVAAVVLYFV 114 (156)
T ss_pred hccCCccHHHHHHHHHHHHHHHHHHh
Confidence 46999999999999888888776654
No 61
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=20.37 E-value=1.4e+02 Score=22.00 Aligned_cols=23 Identities=35% Similarity=0.270 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCc
Q 047755 15 PLFGALGAAVGICAMQLVRNAWTNPE 40 (90)
Q Consensus 15 PLf~~ig~a~~~a~~~~~R~l~~nPd 40 (90)
|+=+++.++..++++++.+ +|||
T Consensus 43 P~ka~~~~~~lg~~~~~~~---~nPd 65 (173)
T PF10171_consen 43 PVKAALYLTLLGGAYYCYR---TNPD 65 (173)
T ss_pred cHHHHHHHHHHHHHHHHHH---cCCC
Confidence 6667777777788888877 6887
No 62
>PF12286 DUF3622: Protein of unknown function (DUF3622); InterPro: IPR022069 This family of proteins is found in bacteria. Proteins in this family are typically between 72 and 107 amino acids in length. There is a conserved VSK sequence motif.
Probab=20.27 E-value=46 Score=21.50 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=18.2
Q ss_pred chhhhchhhhhhHHHHHhhcC
Q 047755 54 ENFDEGYRYKENALRRFVRDK 74 (90)
Q Consensus 54 e~~~eg~~y~~h~~R~~~~~~ 74 (90)
+.++|++.|-++.|.-|+.++
T Consensus 41 ~SEaeAq~W~e~eL~~fl~n~ 61 (71)
T PF12286_consen 41 ASEAEAQAWGEKELKSFLENQ 61 (71)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999765
No 63
>PF15018 InaF-motif: TRP-interacting helix
Probab=20.25 E-value=1.2e+02 Score=17.28 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=13.9
Q ss_pred CcccCcchhh--HHHHHHHHHHHHHHHH
Q 047755 6 FKWVRPEVYP--LFGALGAAVGICAMQL 31 (90)
Q Consensus 6 ~~Wv~pel~P--Lf~~ig~a~~~a~~~~ 31 (90)
++|++--.+= ++.+-.+|+.++.||+
T Consensus 2 ~k~~R~~tV~~Yl~~VSl~Ai~LsiYY~ 29 (38)
T PF15018_consen 2 KKWVRVLTVVAYLFSVSLAAIVLSIYYI 29 (38)
T ss_pred ceEEeeHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566543332 3444556666666665
No 64
>PF08195 TRI9: TRI9 protein; InterPro: IPR013265 This entry contains putative genes, of 129 bp, from the Trichothecene gene cluster of Fusarium sporotrichioides and Gibberella zeae (Fusarium graminearum) that encode a predicted protein of 43 amino acids whose function is unknown [, ].
Probab=20.07 E-value=44 Score=19.44 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=9.7
Q ss_pred HHHHhcCCceeeec
Q 047755 32 VRNAWTNPEVRLTK 45 (90)
Q Consensus 32 ~R~l~~nPdVr~~k 45 (90)
.-.+-.||||+|-.
T Consensus 8 id~~~~dp~vswle 21 (43)
T PF08195_consen 8 IDSYDMDPDVSWLE 21 (43)
T ss_pred hccccCCCCccHHH
Confidence 33455799999954
Done!