Query 047755
Match_columns 90
No_of_seqs 101 out of 192
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047755.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047755hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r5l_A Deazaflavin-dependent n 38.9 18 0.00062 23.8 2.2 49 32-86 60-108 (122)
2 1jb0_I Photosystem 1 reaction 36.6 28 0.00094 19.2 2.4 30 3-32 4-33 (38)
3 1v54_D Cytochrome C oxidase su 34.9 40 0.0014 23.3 3.6 44 17-74 84-127 (147)
4 3r5z_A Putative uncharacterize 33.1 13 0.00046 25.3 0.9 39 32-71 82-120 (145)
5 3r5y_A Putative uncharacterize 30.4 17 0.00058 24.8 1.0 39 32-71 84-122 (147)
6 3ory_A Flap endonuclease 1; hy 29.5 8.1 0.00028 29.7 -0.8 62 29-90 290-363 (363)
7 2y69_D Cytochrome C oxidase su 27.0 64 0.0022 22.8 3.6 23 17-39 106-128 (169)
8 1pfi_A Major coat protein of P 25.3 85 0.0029 17.7 3.2 20 16-35 27-46 (46)
9 2klu_A T-cell surface glycopro 23.5 44 0.0015 20.6 1.9 31 18-51 12-42 (70)
10 3h96_A F420-H2 dependent reduc 22.2 20 0.00069 24.3 0.2 40 31-71 77-116 (143)
No 1
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*
Probab=38.87 E-value=18 Score=23.84 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=29.5
Q ss_pred HHHHhcCCceeeecCCccccccchhhhchhhhhhHHHHHhhcCCCCCCccccccc
Q 047755 32 VRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENALRRFVRDKPPQIMPSVNEFF 86 (90)
Q Consensus 32 ~R~l~~nPdVr~~k~~r~~~~~e~~~eg~~y~~h~~R~~~~~~~p~imp~~n~~f 86 (90)
+|+|..||+|++....+...+...+-++++ ++..++++++ ..|...+|-
T Consensus 60 ~~Nl~A~P~v~v~~~~~~~~~~A~~l~~~E-r~~~~~~~~~-----~~p~y~~yq 108 (122)
T 3r5l_A 60 YLNLKANPKVQVQIKKEVLDLTARDATDEE-RAEYWPQLVT-----MYPSYQDYQ 108 (122)
T ss_dssp HHHHHHCCEEEEEETTEEEEEEEEECCHHH-HHHHHHHHHH-----HCTTCCCTT
T ss_pred HHhhccCCcEEEEECCEEEEEEEEECCcch-HHHHHHHHHH-----HCcCHHHHH
Confidence 789999999999776665444433323332 3555666663 345555443
No 2
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=36.58 E-value=28 Score=19.16 Aligned_cols=30 Identities=13% Similarity=0.018 Sum_probs=24.3
Q ss_pred CCCCcccCcchhhHHHHHHHHHHHHHHHHH
Q 047755 3 GSSFKWVRPEVYPLFGALGAAVGICAMQLV 32 (90)
Q Consensus 3 ~~~~~Wv~pel~PLf~~ig~a~~~a~~~~~ 32 (90)
.++--|+|.=+.||...+-=|++++.++++
T Consensus 4 ~~aa~~LPsI~VPlVglvfPai~Mallf~y 33 (38)
T 1jb0_I 4 SYAASFLPWIFIPVVCWLMPTVVMGLLFLY 33 (38)
T ss_dssp SSTTTTHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hhhhhhCChhhHhHHHHHHHHHHHHHHHHh
Confidence 445568888899999999888888887764
No 3
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=34.92 E-value=40 Score=23.30 Aligned_cols=44 Identities=9% Similarity=0.042 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeeecCCccccccchhhhchhhhhhHHHHHhhcC
Q 047755 17 FGALGAAVGICAMQLVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENALRRFVRDK 74 (90)
Q Consensus 17 f~~ig~a~~~a~~~~~R~l~~nPdVr~~k~~r~~~~~e~~~eg~~y~~h~~R~~~~~~ 74 (90)
.+++++|++++.|...|.....|- .+.+ .+.|++--+++.+..+
T Consensus 84 ~v~~~i~~s~~~f~~~r~~v~~p~------------P~T~--~~Ewqeaq~erm~~~~ 127 (147)
T 1v54_D 84 AAMFFIGFTALLLIWEKHYVYGPI------------PHTF--EEEWVAKQTKRMLDMK 127 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCC------------CGGG--SHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHccCCC------------CCCC--CHHHHHHHHHHHHHcc
Confidence 455667888888888998866442 1112 2456666666666554
No 4
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica}
Probab=33.14 E-value=13 Score=25.31 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=24.2
Q ss_pred HHHHhcCCceeeecCCccccccchhhhchhhhhhHHHHHh
Q 047755 32 VRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENALRRFV 71 (90)
Q Consensus 32 ~R~l~~nPdVr~~k~~r~~~~~e~~~eg~~y~~h~~R~~~ 71 (90)
++||..||+|++....+...+...+-++++ ++..+++++
T Consensus 82 ~~Nl~A~p~v~v~~g~~~~~~~Ar~~~~~E-r~~~w~~~~ 120 (145)
T 3r5z_A 82 YHNIKAEPHVELRDGTEVGDYTAREVTGEE-KRVWWERAV 120 (145)
T ss_dssp HHHHHHCCEEEEEETTEEEEEEEEECCHHH-HHHHHHHHH
T ss_pred HHHhhhCCcEEEEECCEEEEEEEEECCchH-HHHHHHHHH
Confidence 588999999999777666554433322322 244555555
No 5
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica}
Probab=30.43 E-value=17 Score=24.83 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=23.9
Q ss_pred HHHHhcCCceeeecCCccccccchhhhchhhhhhHHHHHh
Q 047755 32 VRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENALRRFV 71 (90)
Q Consensus 32 ~R~l~~nPdVr~~k~~r~~~~~e~~~eg~~y~~h~~R~~~ 71 (90)
++||..||+|++....+...+...+-++++ ++..+++++
T Consensus 84 ~~Nl~A~p~v~v~~g~~~~~~~Ar~~~~~E-r~~~w~~~~ 122 (147)
T 3r5y_A 84 YFNLVADPRAQLRDKDAVLSVVARELAGPE-RAEWWERAV 122 (147)
T ss_dssp HHHHHHCCEEEEEETTEEEEEEEEECCHHH-HHHHHHHHH
T ss_pred HHhhhhCCcEEEEECCEEEEEEEEECCchH-HHHHHHHHH
Confidence 689999999999777665444433322322 244455555
No 6
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=29.50 E-value=8.1 Score=29.73 Aligned_cols=62 Identities=8% Similarity=0.150 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCceeee-----cCCccccccchhhhchhhhhhHHHHHhhcCC-------CCCCcccccccCCCC
Q 047755 29 MQLVRNAWTNPEVRLT-----KANRTAGVLENFDEGYRYKENALRRFVRDKP-------PQIMPSVNEFFSRDN 90 (90)
Q Consensus 29 ~~~~R~l~~nPdVr~~-----k~~r~~~~~e~~~eg~~y~~h~~R~~~~~~~-------p~imp~~n~~f~~~~ 90 (90)
+.-+|.+..||+|.=+ ++++..++.+=+-+-..|.+.++|..+.... -.-=-+|.+||+.||
T Consensus 290 ~~~~~~~f~~p~v~~~~~~~w~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l~~~~~~~~~~~q~~l~~~f~~~~ 363 (363)
T 3ory_A 290 VIAIKKYFLQPQVTDNYRIEWHTPDPDAVKRILVDEHDFSIDRVSTALERYVKAFKENIRGEQKGLSKWFSKPK 363 (363)
T ss_dssp HHHHHHHHHSCCCCSCCCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcccccCcCCCHHHhcCCCC
Confidence 3577888889998632 2344444444345667777777776654321 112357999999886
No 7
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=26.97 E-value=64 Score=22.79 Aligned_cols=23 Identities=4% Similarity=-0.099 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 047755 17 FGALGAAVGICAMQLVRNAWTNP 39 (90)
Q Consensus 17 f~~ig~a~~~a~~~~~R~l~~nP 39 (90)
.+++++|++++.|...|.....|
T Consensus 106 gv~~~i~~s~~~f~~~r~~v~~p 128 (169)
T 2y69_D 106 AAMFFIGFTALLLIWEKHYVYGP 128 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHccCC
Confidence 45666788888888889886644
No 8
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=25.28 E-value=85 Score=17.72 Aligned_cols=20 Identities=20% Similarity=0.069 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047755 16 LFGALGAAVGICAMQLVRNA 35 (90)
Q Consensus 16 Lf~~ig~a~~~a~~~~~R~l 35 (90)
+.+.+-+++.+..|+++|++
T Consensus 27 VGaLvil~VAGLiysm~RKa 46 (46)
T 1pfi_A 27 VGALVILAVAGLIYSMLRKA 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 44555667888899999863
No 9
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=23.50 E-value=44 Score=20.60 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceeeecCCcccc
Q 047755 18 GALGAAVGICAMQLVRNAWTNPEVRLTKANRTAG 51 (90)
Q Consensus 18 ~~ig~a~~~a~~~~~R~l~~nPdVr~~k~~r~~~ 51 (90)
+++|.++++..|....-++ -|+|.+..|++.
T Consensus 12 ivlGg~~~lll~~glcI~c---cvkcrhRrrqAe 42 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFF---SVRSRHRRRQAE 42 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHSSCCSSSCT
T ss_pred HHHhHHHHHHHHHHHHHHH---hhHHHHHHHHHH
Confidence 6788888777777766553 355656555554
No 10
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str}
Probab=22.15 E-value=20 Score=24.31 Aligned_cols=40 Identities=13% Similarity=-0.025 Sum_probs=24.8
Q ss_pred HHHHHhcCCceeeecCCccccccchhhhchhhhhhHHHHHh
Q 047755 31 LVRNAWTNPEVRLTKANRTAGVLENFDEGYRYKENALRRFV 71 (90)
Q Consensus 31 ~~R~l~~nPdVr~~k~~r~~~~~e~~~eg~~y~~h~~R~~~ 71 (90)
=++||..||+|++....+...+...+-++++ ++..+++++
T Consensus 77 W~~Nl~A~p~v~v~~g~~~~~~~A~~~~~~E-r~~~~~~~~ 116 (143)
T 3h96_A 77 WYYNLTTAGTAQVEVGTETYAVGVTEVTGED-RDRIYSEQA 116 (143)
T ss_dssp HHHHHHHHSEEEEEETTEEEEEEEEEECHHH-HHHHHHHHH
T ss_pred HHHhhhhCCcEEEEECCEEEEEEEEecCchH-HHHHHHHHH
Confidence 3688999999999777666554443323322 244555555
Done!