Query 047755
Match_columns 90
No_of_seqs 101 out of 192
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 04:16:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047755.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047755hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54d_ f.23.1.1 (D:) Mitochon 38.5 15 0.0011 23.7 3.6 23 17-39 81-103 (144)
2 d1cf3a1 c.3.1.2 (A:3-324,A:521 23.0 3.4 0.00025 28.8 -2.1 23 18-42 21-43 (385)
3 d1gpea1 c.3.1.2 (A:1-328,A:525 20.4 4.3 0.00031 28.6 -2.0 24 17-42 27-50 (391)
4 d2gkea2 d.21.1.1 (A:131-274) D 18.6 25 0.0018 22.0 1.7 27 19-45 86-112 (144)
5 d1q90n_ f.23.27.1 (N:) PetN su 16.0 65 0.0048 15.5 3.2 21 15-35 3-23 (31)
6 d1a8ya3 c.47.1.3 (A:229-347) C 13.8 13 0.00098 23.5 -0.7 16 5-20 55-70 (119)
7 d1v54c_ f.25.1.1 (C:) Mitochon 12.4 91 0.0066 20.8 3.5 22 9-30 9-30 (259)
8 d2pw6a1 c.56.6.1 (A:14-271) Un 11.9 28 0.0021 23.7 0.6 12 12-23 221-232 (258)
9 d1st6a7 a.24.9.1 (A:719-855) V 9.7 73 0.0053 19.6 2.0 27 58-84 104-130 (137)
10 d1tlha_ a.150.1.1 (A:) Anti-si 9.5 32 0.0023 20.6 0.1 20 57-76 43-62 (89)
No 1
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=38.46 E-value=15 Score=23.70 Aligned_cols=23 Identities=4% Similarity=-0.099 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 047755 17 FGALGAAVGICAMQLVRNAWTNP 39 (90)
Q Consensus 17 f~~ig~a~~~a~~~~~R~l~~nP 39 (90)
.+++++|++++.|...|....+|
T Consensus 81 ~~~~~i~~s~~i~~~~r~~v~p~ 103 (144)
T d1v54d_ 81 AAMFFIGFTALLLIWEKHYVYGP 103 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 46678888888999999877664
No 2
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}
Probab=22.97 E-value=3.4 Score=28.83 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcee
Q 047755 18 GALGAAVGICAMQLVRNAWTNPEVR 42 (90)
Q Consensus 18 ~~ig~a~~~a~~~~~R~l~~nPdVr 42 (90)
++||.|.++|+ +...|..||+++
T Consensus 21 IIVGsG~aG~v--lA~rLse~~~~~ 43 (385)
T d1cf3a1 21 IIAGGGLTGLT--TAARLTENPNIS 43 (385)
T ss_dssp EEECCSHHHHH--HHHHHTTSTTCC
T ss_pred EEECcCHHHHH--HHHHHHHCCCCe
Confidence 56677766654 455587888654
No 3
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}
Probab=20.45 E-value=4.3 Score=28.55 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcee
Q 047755 17 FGALGAAVGICAMQLVRNAWTNPEVR 42 (90)
Q Consensus 17 f~~ig~a~~~a~~~~~R~l~~nPdVr 42 (90)
|++||.|.++|+ +...|..+|+++
T Consensus 27 ~IIVGsG~aG~v--lA~rLae~~~~~ 50 (391)
T d1gpea1 27 YIIAGGGLTGLT--VAAKLTENPKIK 50 (391)
T ss_dssp EEEECCSHHHHH--HHHHHHTSTTCC
T ss_pred EEEECcCHHHHH--HHHHHHHCCCCe
Confidence 356788777775 344477888643
No 4
>d2gkea2 d.21.1.1 (A:131-274) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]}
Probab=18.57 E-value=25 Score=22.04 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceeeec
Q 047755 19 ALGAAVGICAMQLVRNAWTNPEVRLTK 45 (90)
Q Consensus 19 ~ig~a~~~a~~~~~R~l~~nPdVr~~k 45 (90)
+||.|++++++...++-..+.++.+.-
T Consensus 86 aCGTGA~Aaa~~~~~~~~~~~~i~V~~ 112 (144)
T d2gkea2 86 ACGSGACAAVAVGIMQGLLNNNVQVDL 112 (144)
T ss_dssp CCHHHHHHHHHHHHHTTSSCSEEEEEE
T ss_pred ccchhhHHHHHHHHHcCCCCCcEEEEE
Confidence 578888888888777666666665543
No 5
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=16.02 E-value=65 Score=15.49 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 047755 15 PLFGALGAAVGICAMQLVRNA 35 (90)
Q Consensus 15 PLf~~ig~a~~~a~~~~~R~l 35 (90)
|+++-++-|..+++|+..-.|
T Consensus 3 p~iv~~awaa~~atfsfslsl 23 (31)
T d1q90n_ 3 PAIVQIGWAATCVMFSFSLSL 23 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEhHHHHHHHhheeeEEE
Confidence 788888989888888776544
No 6
>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=13.83 E-value=13 Score=23.50 Aligned_cols=16 Identities=31% Similarity=0.858 Sum_probs=13.0
Q ss_pred CCcccCcchhhHHHHH
Q 047755 5 SFKWVRPEVYPLFGAL 20 (90)
Q Consensus 5 ~~~Wv~pel~PLf~~i 20 (90)
|..||+|.-+||.+-.
T Consensus 55 sivWIDPD~FPlm~~y 70 (119)
T d1a8ya3 55 SIIWIDPDDFPLLVPY 70 (119)
T ss_dssp CEEEECGGGCTTTHHH
T ss_pred eEEEECCcccchHHHH
Confidence 5689999999997643
No 7
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.43 E-value=91 Score=20.79 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=16.3
Q ss_pred cCcchhhHHHHHHHHHHHHHHH
Q 047755 9 VRPEVYPLFGALGAAVGICAMQ 30 (90)
Q Consensus 9 v~pel~PLf~~ig~a~~~a~~~ 30 (90)
++|+-+|+++.+|+.....+..
T Consensus 9 v~~SpWP~~~s~~~~~~~~g~~ 30 (259)
T d1v54c_ 9 VNPSPWPLTGALSALLMTSGLT 30 (259)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHH
Confidence 5789999999888766554443
No 8
>d2pw6a1 c.56.6.1 (A:14-271) Uncharacterized protein YgiD {Escherichia coli [TaxId: 562]}
Probab=11.86 E-value=28 Score=23.70 Aligned_cols=12 Identities=42% Similarity=0.512 Sum_probs=10.1
Q ss_pred chhhHHHHHHHH
Q 047755 12 EVYPLFGALGAA 23 (90)
Q Consensus 12 el~PLf~~ig~a 23 (90)
-++||++++|+|
T Consensus 221 H~~Pl~~alGa~ 232 (258)
T d2pw6a1 221 HYLPLLYVLGAW 232 (258)
T ss_dssp TTHHHHHHHHTC
T ss_pred HHHHHHHHhhCC
Confidence 378999999974
No 9
>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.75 E-value=73 Score=19.56 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=19.4
Q ss_pred hchhhhhhHHHHHhhcCCCCCCccccc
Q 047755 58 EGYRYKENALRRFVRDKPPQIMPSVNE 84 (90)
Q Consensus 58 eg~~y~~h~~R~~~~~~~p~imp~~n~ 84 (90)
+.-...=+.+|+.+....|+|.|-.++
T Consensus 104 ~~l~~aV~~Vr~Al~~~~pd~l~~~~d 130 (137)
T d1st6a7 104 YRILGAVAKVREAFQPQEPDFPPPPPD 130 (137)
T ss_dssp TTHHHHHHHHHHHHSCCSSCSCCCCCC
T ss_pred HHHHHHHHHHHHHHccCCcccCCCCCc
Confidence 333445577899998888998776554
No 10
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=9.48 E-value=32 Score=20.61 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=17.7
Q ss_pred hhchhhhhhHHHHHhhcCCC
Q 047755 57 DEGYRYKENALRRFVRDKPP 76 (90)
Q Consensus 57 ~eg~~y~~h~~R~~~~~~~p 76 (90)
.+|+++.+..||+.+..+++
T Consensus 43 ~~G~eft~~sFrqm~~~Lt~ 62 (89)
T d1tlha_ 43 HEGRKLNQNSFRKIVSELTQ 62 (89)
T ss_dssp ETTEECCHHHHHHHHHSSCH
T ss_pred cccHHHHHhHHHHHHHHCCH
Confidence 47999999999999988865
Done!