BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047757
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/300 (63%), Positives = 210/300 (70%), Gaps = 67/300 (22%)
Query: 5 LISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDI 64
LISKIREEYP+RIM TFSV SPKVSD VVEPYNATLSVHQLVEN DE ++NEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDI 210
Query: 65 CLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVG 124
C RTLKLTTP GDLNHL+S TMSGVT CLRFPGQLN+DLRKL VN++PFPRLHF M G
Sbjct: 211 CFRTLKLTTP-TYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPG 269
Query: 125 FAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQ 184
FAPLTSRGSQQY++L+VPE+T QM+D +NMM A D RHGRYLT +T+FRG+MS KEVDEQ
Sbjct: 270 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVATIFRGRMSMKEVDEQ 329
Query: 185 MINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC--------------- 229
M+N+QNKNS SYFVEWIPNNVK++VC
Sbjct: 330 MLNIQNKNS--------------------SYFVEWIPNNVKTAVCDIPPRGLKMSSTFIG 369
Query: 230 -------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDAT 258
EGMDEMEFTEAESNMNDLV+EYQQYQDAT
Sbjct: 370 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 369 bits (948), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/300 (63%), Positives = 209/300 (69%), Gaps = 67/300 (22%)
Query: 5 LISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDI 64
LISKIREEYP+RIM TFSV SPKVSD VVEPYNATLSVHQLVEN DE ++NEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 210
Query: 65 CLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVG 124
C RTLKLTTP GDLNHL+S TMSGVT CLRFPGQLN+DLRKL VN++PFPRLHF M G
Sbjct: 211 CFRTLKLTTP-TYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPG 269
Query: 125 FAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQ 184
FAPLTSRGSQQY++L+VPE+T QM+D +NMM A D RHGRYLT + +FRG+MS KEVDEQ
Sbjct: 270 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQ 329
Query: 185 MINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC--------------- 229
M+NVQNKNS SYFVEWIPNNVK++VC
Sbjct: 330 MLNVQNKNS--------------------SYFVEWIPNNVKTAVCDIPPRGLKMSATFIG 369
Query: 230 -------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDAT 258
EGMDEMEFTEAESNMNDLV+EYQQYQDAT
Sbjct: 370 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 369 bits (948), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/300 (63%), Positives = 209/300 (69%), Gaps = 67/300 (22%)
Query: 5 LISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDI 64
LISKIREEYP+RIM TFSV SPKVSD VVEPYNATLSVHQLVEN DE ++NEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDI 210
Query: 65 CLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVG 124
C RTLKLTTP GDLNHL+S TMSGVT CLRFPGQLN+DLRKL VN++PFPRLHF M G
Sbjct: 211 CFRTLKLTTP-TYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPG 269
Query: 125 FAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQ 184
FAPLTSRGSQQY++L+VPE+T QM+D +NMM A D RHGRYLT + +FRG+MS KEVDEQ
Sbjct: 270 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQ 329
Query: 185 MINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC--------------- 229
M+NVQNKNS SYFVEWIPNNVK++VC
Sbjct: 330 MLNVQNKNS--------------------SYFVEWIPNNVKTAVCDIPPRGLKMSATFIG 369
Query: 230 -------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDAT 258
EGMDEMEFTEAESNMNDLV+EYQQYQDAT
Sbjct: 370 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 369 bits (948), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/300 (63%), Positives = 209/300 (69%), Gaps = 67/300 (22%)
Query: 5 LISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDI 64
LISKIREEYP+RIM TFSV SPKVSD VVEPYNATLSVHQLVEN DE ++NEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDI 210
Query: 65 CLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVG 124
C RTLKLTTP GDLNHL+S TMSGVT CLRFPGQLN+DLRKL VN++PFPRLHF M G
Sbjct: 211 CFRTLKLTTP-TYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPG 269
Query: 125 FAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQ 184
FAPLTSRGSQQY++L+VPE+T QM+D +NMM A D RHGRYLT + +FRG+MS KEVDEQ
Sbjct: 270 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQ 329
Query: 185 MINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC--------------- 229
M+NVQNKNS SYFVEWIPNNVK++VC
Sbjct: 330 MLNVQNKNS--------------------SYFVEWIPNNVKTAVCDIPPRGLKMSATFIG 369
Query: 230 -------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDAT 258
EGMDEMEFTEAESNMNDLV+EYQQYQDAT
Sbjct: 370 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 369 bits (947), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/300 (63%), Positives = 209/300 (69%), Gaps = 67/300 (22%)
Query: 5 LISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDI 64
LISKIREEYP+RIM TFSV SPKVSD VVEPYNATLSVHQLVEN DE ++NEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDI 210
Query: 65 CLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVG 124
C RTLKLTTP GDLNHL+S TMSGVT CLRFPGQLN+DLRKL VN++PFPRLHF M G
Sbjct: 211 CFRTLKLTTP-TYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPG 269
Query: 125 FAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQ 184
FAPLTSRGSQQY++L+VPE+T QM+D +NMM A D RHGRYLT + +FRG+MS KEVDEQ
Sbjct: 270 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQ 329
Query: 185 MINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC--------------- 229
M+NVQNKNS SYFVEWIPNNVK++VC
Sbjct: 330 MLNVQNKNS--------------------SYFVEWIPNNVKTAVCDIPPRGLKMSATFIG 369
Query: 230 -------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDAT 258
EGMDEMEFTEAESNMNDLV+EYQQYQDAT
Sbjct: 370 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/300 (63%), Positives = 209/300 (69%), Gaps = 67/300 (22%)
Query: 5 LISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDI 64
LISKIREEYP+RIM TFSV SPKVSD VVEPYNATLSVHQLVEN DE ++NEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDI 210
Query: 65 CLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVG 124
C RTLKLTTP GDLNHL+S TMSGVT CLRFPGQLN+DLRKL VN++PFPRLHF M G
Sbjct: 211 CFRTLKLTTP-TYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPG 269
Query: 125 FAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQ 184
FAPLTSRGSQQY++L+VPE+T QM+D +NMM A D RHGRYLT + +FRG+MS KEVDEQ
Sbjct: 270 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQ 329
Query: 185 MINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC--------------- 229
M+NVQNKNS SYFVEWIPNNVK++VC
Sbjct: 330 MLNVQNKNS--------------------SYFVEWIPNNVKTAVCDIPPRGLKMSATFIG 369
Query: 230 -------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDAT 258
EGMDEMEFTEAESNMNDLV+EYQQYQDAT
Sbjct: 370 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/300 (63%), Positives = 209/300 (69%), Gaps = 67/300 (22%)
Query: 5 LISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDI 64
LISKIREEYP+RIM TFSV SPKVSD VVEPYNATLSVHQLVEN DE ++NEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 210
Query: 65 CLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVG 124
C RTLKLTTP GDLNHL+S TMSGVT CLRFPGQLN+DLRKL VN++PFPRLHF M G
Sbjct: 211 CFRTLKLTTP-TYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPG 269
Query: 125 FAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQ 184
FAPLTSRGSQQY++L+VPE+T QM+D +NMM A D RHGRYLT + +FRG+MS KEVDEQ
Sbjct: 270 FAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQ 329
Query: 185 MINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC--------------- 229
M+NVQNKNS SYFVEWIPNNVK++VC
Sbjct: 330 MLNVQNKNS--------------------SYFVEWIPNNVKTAVCDIPPRGLKMSATFIG 369
Query: 230 -------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDAT 258
EGMDEMEFTEAESNMNDLV+EYQQYQDAT
Sbjct: 370 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/300 (63%), Positives = 209/300 (69%), Gaps = 67/300 (22%)
Query: 5 LISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDI 64
LISKIREEYP+RIM TFSV SPKVSD VVEPYNATLSVHQLVEN DE ++NEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 210
Query: 65 CLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVG 124
C RTLKLTTP GDLNHL+S TMSGVT CLRFPGQLN+DLRKL VN++PFPRLHF M G
Sbjct: 211 CFRTLKLTTP-TYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPG 269
Query: 125 FAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQ 184
FAPLTSRGSQQY++L+VPE+T QM+D +NMM A D RHGRYLT + +FRG+MS KEVDEQ
Sbjct: 270 FAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQ 329
Query: 185 MINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC--------------- 229
M+NVQNKNS SYFVEWIPNNVK++VC
Sbjct: 330 MLNVQNKNS--------------------SYFVEWIPNNVKTAVCDIPPRGLKMSATFIG 369
Query: 230 -------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDAT 258
EGMDEMEFTEAESNMNDLV+EYQQYQDAT
Sbjct: 370 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/298 (62%), Positives = 207/298 (69%), Gaps = 67/298 (22%)
Query: 5 LISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDI 64
LISKIREEYP+RIM TFSV SPKVSD VVEPYNATLSVHQLVEN DE ++NEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI 210
Query: 65 CLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVG 124
C RTLKLTTP GDLNHL+S TMSGVT CLRFPGQLN+DLRKL VN++PFPRLHF M G
Sbjct: 211 CFRTLKLTTP-TYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPG 269
Query: 125 FAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQ 184
FAPLTSRGSQQY++L+VPE+T QM+D +NMM A D RHGRYLT + +FRG+MS KEVDEQ
Sbjct: 270 FAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQ 329
Query: 185 MINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC--------------- 229
M+NVQNKNS SYFVEWIPNNVK++VC
Sbjct: 330 MLNVQNKNS--------------------SYFVEWIPNNVKTAVCDIPPRGLKMSATFIG 369
Query: 230 -------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQD 256
EGMDEMEFTEAESNMNDLV+EYQQYQD
Sbjct: 370 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 324 bits (831), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 167/301 (55%), Positives = 202/301 (67%), Gaps = 67/301 (22%)
Query: 5 LISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDI 64
LISKIREE+P+R+M TFSV SPK SD VEPYNATLSVHQLVE++DE ++NEALYDI
Sbjct: 151 LISKIREEFPDRMMATFSVLPSPKRSDTRVEPYNATLSVHQLVEHSDETFCIDNEALYDI 210
Query: 65 CLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVG 124
C RTLKL P+ GDLN+L+S MSGVT LR+PGQLNSDLRKL VNL+PFPRLHF MVG
Sbjct: 211 CQRTLKLNQPS-YGDLNNLVSSVMSGVTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVG 269
Query: 125 FAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQ 184
+APLT+ GSQ ++SL+VPE+T QM+D +NMM AAD R+GRYLT + FRGK+S KEV+++
Sbjct: 270 YAPLTAIGSQSFRSLTVPELTQQMFDAKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDE 329
Query: 185 MINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC--------------- 229
M VQ+KNS YFVEWIPNNV+++VC
Sbjct: 330 MHKVQSKNS--------------------DYFVEWIPNNVQTAVCSVAPQGLDMAATFIA 369
Query: 230 -------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDAT 258
EGMDE+EF+EAESNMNDLV+EYQQYQ+AT
Sbjct: 370 NSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNMNDLVSEYQQYQEAT 429
Query: 259 I 259
+
Sbjct: 430 V 430
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 150/284 (52%), Gaps = 35/284 (12%)
Query: 4 LLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYD 63
LL+ ++ +Y ++ L FS++ +P+VS VVEPYN+ L+ H +E++D +++NEA+YD
Sbjct: 152 LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
Query: 64 ICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMV 123
IC R L + P +LN LIS +S +T LRF G LN DL + NL+P+PR+HF +
Sbjct: 212 ICRRNLDIERPTYT-NLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLA 270
Query: 124 GFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDE 183
+AP+ S ++ LSV EIT+ ++ N M D RHG+Y+ ++RG + K+V+
Sbjct: 271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNA 330
Query: 184 QMINVQNKNS-------SSARYFGLGF---------------LALVVLRGSTSYFVEWIP 221
+ ++ K S + G+ + A+ +L +T+ W
Sbjct: 331 AIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWAR 390
Query: 222 NN------------VKSSVCEGMDEMEFTEAESNMNDLVAEYQQ 253
+ V V EGM+E EF+EA +M L +Y++
Sbjct: 391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 150/284 (52%), Gaps = 35/284 (12%)
Query: 4 LLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYD 63
LL+ ++ +Y ++ L FS++ +P+VS VVEPYN+ L+ H +E++D +++NEA+YD
Sbjct: 152 LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
Query: 64 ICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMV 123
IC R L + P +LN LIS +S +T LRF G LN DL + NL+P+PR+HF +
Sbjct: 212 ICRRNLDIERPTYT-NLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLA 270
Query: 124 GFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDE 183
+AP+ S ++ LSV EIT+ ++ N M D RHG+Y+ ++RG + K+V+
Sbjct: 271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNA 330
Query: 184 QMINVQNKNS-------SSARYFGLGF---------------LALVVLRGSTSYFVEWIP 221
+ ++ K S + G+ + A+ +L +T+ W
Sbjct: 331 AIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWAR 390
Query: 222 NN------------VKSSVCEGMDEMEFTEAESNMNDLVAEYQQ 253
+ V V EGM+E EF+EA +M L +Y++
Sbjct: 391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 150/284 (52%), Gaps = 35/284 (12%)
Query: 4 LLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYD 63
LL+ ++ +Y ++ L FS++ +P+VS VVEPYN+ L+ H +E++D +++NEA+YD
Sbjct: 152 LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
Query: 64 ICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMV 123
IC R L + P +LN LIS +S +T LRF G LN DL + NL+P+PR+HF +
Sbjct: 212 ICRRNLDIERPTYT-NLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLA 270
Query: 124 GFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDE 183
+AP+ S ++ LSV EIT+ ++ N M D RHG+Y+ ++RG + K+V+
Sbjct: 271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNA 330
Query: 184 QMINVQNKNS-------SSARYFGLGF---------------LALVVLRGSTSYFVEWIP 221
+ ++ K S + G+ + A+ +L +T+ W
Sbjct: 331 AIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWAR 390
Query: 222 NN------------VKSSVCEGMDEMEFTEAESNMNDLVAEYQQ 253
+ V V EGM+E EF+EA +M L +Y++
Sbjct: 391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 149/284 (52%), Gaps = 35/284 (12%)
Query: 4 LLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYD 63
LL+ ++ +Y ++ L FS++ +P+VS VVEPYN+ L+ H +E++D +++NEA+YD
Sbjct: 152 LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
Query: 64 ICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMV 123
IC R L + P +LN LI +S +T LRF G LN DL + NL+P+PR+HF +
Sbjct: 212 ICRRNLDIERPTYT-NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLA 270
Query: 124 GFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDE 183
+AP+ S ++ LSV EIT+ ++ N M D RHG+Y+ ++RG + K+V+
Sbjct: 271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNA 330
Query: 184 QMINVQNKNS-------SSARYFGLGF---------------LALVVLRGSTSYFVEWIP 221
+ ++ K S + G+ + A+ +L +T+ W
Sbjct: 331 AIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWAR 390
Query: 222 NNVKSS------------VCEGMDEMEFTEAESNMNDLVAEYQQ 253
+ K V EGM+E EF+EA +M L +Y++
Sbjct: 391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 157 bits (397), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 149/284 (52%), Gaps = 35/284 (12%)
Query: 4 LLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYD 63
LL+ ++ +Y ++ L FS++ +P+VS VVEPYN+ L+ H +E++D +++NEA+YD
Sbjct: 152 LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
Query: 64 ICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMV 123
IC R L + P +LN LI +S +T LRF G LN DL + NL+P+PR+HF +
Sbjct: 212 ICRRNLDIERPTYT-NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLA 270
Query: 124 GFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDE 183
+AP+ S ++ LSV EIT+ ++ N M D RHG+Y+ ++RG + K+V+
Sbjct: 271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNA 330
Query: 184 QMINVQNKNS-------SSARYFGLGF---------------LALVVLRGSTSYFVEWIP 221
+ ++ K + + G+ + A+ +L +T+ W
Sbjct: 331 AIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWAR 390
Query: 222 NN------------VKSSVCEGMDEMEFTEAESNMNDLVAEYQQ 253
+ V V EGM+E EF+EA +M L +Y++
Sbjct: 391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 157 bits (397), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 150/284 (52%), Gaps = 35/284 (12%)
Query: 4 LLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYD 63
LL+ ++ +Y ++ L FS++ +P+VS VVEPYN+ L+ H +E++D +++NEA+YD
Sbjct: 152 LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
Query: 64 ICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMV 123
IC R L + P +LN L+S +S +T LRF G LN DL + NL+P+PR+HF +
Sbjct: 212 ICRRNLDIERPTYT-NLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLA 270
Query: 124 GFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDE 183
+AP+ S ++ LSV EIT+ ++ N M D RHG+Y+ ++RG + K+V+
Sbjct: 271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNA 330
Query: 184 QMINVQNKNS-------SSARYFGLGF---------------LALVVLRGSTSYFVEWIP 221
+ ++ K + + G+ + A+ +L +T+ W
Sbjct: 331 AIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWAR 390
Query: 222 NN------------VKSSVCEGMDEMEFTEAESNMNDLVAEYQQ 253
+ V V EGM+E EF+EA +M L +Y++
Sbjct: 391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 157 bits (397), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 149/284 (52%), Gaps = 35/284 (12%)
Query: 4 LLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYD 63
LL+ ++ +Y ++ L FS++ +P+VS VVEPYN+ L+ H +E++D +++NEA+YD
Sbjct: 152 LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
Query: 64 ICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMV 123
IC R L + P +LN LI +S +T LRF G LN DL + NL+P+PR+HF +
Sbjct: 212 ICRRNLDIERPTYT-NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLA 270
Query: 124 GFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDE 183
+AP+ S ++ LSV EIT+ ++ N M D RHG+Y+ ++RG + K+V+
Sbjct: 271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNA 330
Query: 184 QMINVQNKNS-------SSARYFGLGF---------------LALVVLRGSTSYFVEWIP 221
+ ++ K + + G+ + A+ +L +T+ W
Sbjct: 331 AIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWAR 390
Query: 222 NN------------VKSSVCEGMDEMEFTEAESNMNDLVAEYQQ 253
+ V V EGM+E EF+EA +M L +Y++
Sbjct: 391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 157 bits (396), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 113/182 (62%), Gaps = 2/182 (1%)
Query: 8 KIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLR 67
++R+ YP++ + TFSV SP +SD VEPYNA L++ ++++NAD ++L+NEAL+ I
Sbjct: 155 RLRQAYPKKRIFTFSVVPSPLISDSAVEPYNAILTLQRILDNADGAVLLDNEALFRIA-- 212
Query: 68 TLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAP 127
KL DLN++I+ +S VT LRFPG+LN+DL + V NL+PFP HF FAP
Sbjct: 213 KAKLNRSPNYMDLNNIIALIVSSVTASLRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAP 272
Query: 128 LTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQMIN 187
+ G + + P++ + + N A D + G YL AS +FRG + AK+VDE M
Sbjct: 273 MRGAGQEGQVRTNFPDLARETFAQDNFTAAIDWQQGVYLAASALFRGDVKAKDVDENMAT 332
Query: 188 VQ 189
++
Sbjct: 333 IR 334
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 148/284 (52%), Gaps = 35/284 (12%)
Query: 4 LLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYD 63
LL+ ++ +Y ++ L FS++ +P+VS VVEPYN+ L+ H +E++D +++NEA+YD
Sbjct: 152 LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
Query: 64 ICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMV 123
IC R L + P +LN LI +S +T LRF G LN DL + NL+P+PR HF +
Sbjct: 212 ICRRNLDIERPTYT-NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRAHFPLA 270
Query: 124 GFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDE 183
+AP+ S ++ LSV EIT+ ++ N M D RHG+Y+ ++RG + K+V+
Sbjct: 271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNA 330
Query: 184 QMINVQNKNS-------SSARYFGLGF---------------LALVVLRGSTSYFVEWIP 221
+ ++ K + + G+ + A+ +L +T+ W
Sbjct: 331 AIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWAR 390
Query: 222 NN------------VKSSVCEGMDEMEFTEAESNMNDLVAEYQQ 253
+ V V EGM+E EF+EA +M L +Y++
Sbjct: 391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 148/284 (52%), Gaps = 35/284 (12%)
Query: 4 LLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYD 63
LL+ ++ +Y ++ L FS++ +P+VS VVEPYN+ L+ H +E++D +++NEA+YD
Sbjct: 152 LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
Query: 64 ICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMV 123
IC R L + P +LN LI +S +T LRF G LN DL + NL+P+PR HF +
Sbjct: 212 ICRRNLDIERPTYT-NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLA 270
Query: 124 GFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDE 183
+AP+ S ++ LSV EIT+ ++ N M D RHG+Y+ ++RG + K+V+
Sbjct: 271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNA 330
Query: 184 QMINVQNKNS-------SSARYFGLGF---------------LALVVLRGSTSYFVEWIP 221
+ ++ K + + G+ + A+ +L +T+ W
Sbjct: 331 AIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWAR 390
Query: 222 NN------------VKSSVCEGMDEMEFTEAESNMNDLVAEYQQ 253
+ V V EGM+E EF+EA +M L +Y++
Sbjct: 391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 148/284 (52%), Gaps = 35/284 (12%)
Query: 4 LLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYD 63
LL+ ++ +Y ++ L FS++ +P+VS VVEPYN+ L+ H +E++D +++NEA+YD
Sbjct: 152 LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
Query: 64 ICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMV 123
IC R L + P +LN LI +S +T LRF G LN DL + NL+P+PR HF +
Sbjct: 212 ICRRNLDIERPTYT-NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLA 270
Query: 124 GFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDE 183
+AP+ S ++ LSV EIT+ ++ N M D RHG+Y+ ++RG + K+V+
Sbjct: 271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNA 330
Query: 184 QMINVQNKNS-------SSARYFGLGF---------------LALVVLRGSTSYFVEWIP 221
+ ++ K + + G+ + A+ +L +T+ W
Sbjct: 331 AIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWAR 390
Query: 222 NN------------VKSSVCEGMDEMEFTEAESNMNDLVAEYQQ 253
+ V V EGM+E EF+EA +M L +Y++
Sbjct: 391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 148/284 (52%), Gaps = 35/284 (12%)
Query: 4 LLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYD 63
LL+ ++ +Y ++ L FS++ +P+VS VVEPYN+ L+ H +E++D +++NEA+YD
Sbjct: 152 LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
Query: 64 ICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMV 123
IC R L + P +LN LI +S +T LRF G LN DL + NL+P+PR HF +
Sbjct: 212 ICRRNLDIERPTYT-NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLA 270
Query: 124 GFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDE 183
+AP+ S ++ LSV EIT+ ++ N M D RHG+Y+ ++RG + K+V+
Sbjct: 271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNA 330
Query: 184 QMINVQNKNS-------SSARYFGLGF---------------LALVVLRGSTSYFVEWIP 221
+ ++ K + + G+ + A+ +L +T+ W
Sbjct: 331 AIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWAR 390
Query: 222 NN------------VKSSVCEGMDEMEFTEAESNMNDLVAEYQQ 253
+ V V EGM+E EF+EA +M L +Y++
Sbjct: 391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 144/274 (52%), Gaps = 35/274 (12%)
Query: 12 EYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKL 71
EY ++ L F+V+ +P+VS VVEPYN L+ H +E+AD +++NEA+YD+C R L +
Sbjct: 161 EYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDI 220
Query: 72 TTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSR 131
P+ +LN+LI+ +S VT LRF G LN DL + NL+P+PR+HF +V ++P+ S+
Sbjct: 221 PRPS-FANLNNLIAQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSK 279
Query: 132 GSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQMINVQNK 191
++S SV EIT+ ++ N M D R G+Y+ ++RG + ++V + V+NK
Sbjct: 280 SKAFHESNSVSEITNACFEPGNQMVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKNK 339
Query: 192 NSSS-----ARYFGLGFL-----------------ALVVLRGSTSYFVEWIPNNVKSS-- 227
+ F +G A+ +L +TS W + K
Sbjct: 340 KTVQLVDWCPTGFKIGICYEPPTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLM 399
Query: 228 ----------VCEGMDEMEFTEAESNMNDLVAEY 251
V EGM+E EFTEA ++ L +Y
Sbjct: 400 YAKRAFVHWYVGEGMEEGEFTEAREDLAALERDY 433
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 110/179 (61%), Gaps = 3/179 (1%)
Query: 3 TLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALY 62
LLI ++E+Y E +L+ +V SP+VS +V EPYN +++ L +AD C++ +NEAL+
Sbjct: 153 ALLIESLKEKYGEIPVLSCAVLPSPQVSSVVTEPYNTVFALNTLRRSADACLIFDNEALF 212
Query: 63 DICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSD--LRKLVVNLIPFPRLHF 120
D+ R + +P V DLN LI+ ++G+T +RF G L + LR+L+ NL+P P LHF
Sbjct: 213 DLAHRKWNIESPTV-DDLNLLITEALAGITASMRFSGFLTVEISLRELLTNLVPQPSLHF 271
Query: 121 AMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAK 179
M FAPLT +++ L + E+ ++D+ ++ A GR+L+ + ++RG M K
Sbjct: 272 LMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSVFAACSPMEGRFLSTAVLYRGIMEDK 330
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 126/221 (57%), Gaps = 14/221 (6%)
Query: 1 MGTLLISKIREEYPERIMLTFSVF-RSPKVSDIVVEPYNATLSVHQLVENADECMVLNNE 59
+G+ L+ ++ + YP++++ T+SVF ++SD+VV+PYN+ L++ +L +NAD +VL+N
Sbjct: 149 LGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCLVVLDNT 208
Query: 60 ALYDICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLH 119
AL I L + P+ +N L+S MS T LR+PG +N+DL L+ +LIP PRLH
Sbjct: 209 ALNRIATDRLHIQNPS-FSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH 267
Query: 120 FAMVGFAPLTSRGS-QQYQSLSVPEITHQMWDDRNMMCAADLRHGR-------YLTASTM 171
F M G+ PLT+ S + +V ++ ++ +N+M + GR Y+ +
Sbjct: 268 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVST----GRDRQTNHCYIAILNI 323
Query: 172 FRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGS 212
+G++ +V + + ++ + ++ +G + + + R S
Sbjct: 324 IQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKS 364
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 126/221 (57%), Gaps = 14/221 (6%)
Query: 1 MGTLLISKIREEYPERIMLTFSVF-RSPKVSDIVVEPYNATLSVHQLVENADECMVLNNE 59
+G+ L+ ++ + YP++++ T+SVF ++SD+VV+PYN+ L++ +L +NAD +VL+N
Sbjct: 149 LGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCLVVLDNT 208
Query: 60 ALYDICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLH 119
AL I L + P+ +N L+S MS T LR+PG +N+DL L+ +LIP PRLH
Sbjct: 209 ALNRIATDRLHIQNPS-FSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH 267
Query: 120 FAMVGFAPLTSRGS-QQYQSLSVPEITHQMWDDRNMMCAADLRHGR-------YLTASTM 171
F M G+ PLT+ S + +V ++ ++ +N+M + GR Y+ +
Sbjct: 268 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVST----GRDRQTNHCYIAILNI 323
Query: 172 FRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGS 212
+G++ +V + + ++ + ++ +G + + + R S
Sbjct: 324 IQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKS 364
>pdb|2RD2|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L- Glutaminyl)-Sulfamoyl]adenosine
pdb|2RE8|A Chain A, Glutaminyl-Trna Synthetase Mutant C229r With Bound Analog
5'-O-[n-(L-Glutamyl)-Sulfamoyl]adenosine
Length = 556
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 79 DLNHLISGTMSGVTCCLR-FPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLT---SRGSQ 134
D H IS + G+T LR Q N L V++ I P +H F+ L + S+
Sbjct: 213 DFTHCISDALEGITHSLRTLEFQDNRRLYDWVLDNITIP-VHPRQYEFSRLNLEYTVMSK 271
Query: 135 QYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTAS 169
+ +L V + + WDD M + LR Y AS
Sbjct: 272 RKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAAS 306
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,154,082
Number of Sequences: 62578
Number of extensions: 268170
Number of successful extensions: 694
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 50
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)