Query 047757
Match_columns 275
No_of_seqs 143 out of 906
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:50:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 3.3E-79 7.1E-84 553.8 16.9 242 1-263 147-437 (443)
2 PTZ00010 tubulin beta chain; P 100.0 1.7E-63 3.6E-68 477.6 18.4 243 1-264 147-435 (445)
3 PLN00221 tubulin alpha chain; 100.0 6E-63 1.3E-67 473.8 18.9 241 1-262 149-443 (450)
4 PTZ00335 tubulin alpha chain; 100.0 5.5E-61 1.2E-65 460.0 18.5 238 1-259 149-440 (448)
5 PLN00220 tubulin beta chain; P 100.0 1.8E-60 3.8E-65 457.4 19.0 251 1-272 147-443 (447)
6 cd02187 beta_tubulin The tubul 100.0 5.2E-60 1.1E-64 451.5 18.4 233 1-254 146-424 (425)
7 PLN00222 tubulin gamma chain; 100.0 1.4E-59 3E-64 450.7 19.2 239 1-260 149-447 (454)
8 cd02188 gamma_tubulin Gamma-tu 100.0 4.3E-59 9.3E-64 445.1 17.5 230 1-251 147-431 (431)
9 cd02186 alpha_tubulin The tubu 100.0 2.1E-58 4.6E-63 441.3 17.3 233 1-254 148-434 (434)
10 PTZ00387 epsilon tubulin; Prov 100.0 1.5E-57 3.1E-62 437.4 18.6 233 1-257 148-452 (465)
11 cd02190 epsilon_tubulin The tu 100.0 3.3E-54 7.1E-59 406.1 14.8 217 1-253 116-378 (379)
12 KOG1374 Gamma tubulin [Cytoske 100.0 2.5E-53 5.3E-58 385.7 14.1 238 1-259 149-444 (448)
13 cd06059 Tubulin The tubulin su 100.0 2.5E-51 5.4E-56 387.5 17.8 230 1-253 106-382 (382)
14 cd02189 delta_tubulin The tubu 100.0 6.5E-51 1.4E-55 390.9 15.9 225 1-252 143-445 (446)
15 KOG1376 Alpha tubulin [Cytoske 100.0 1.3E-50 2.7E-55 366.8 9.3 233 1-248 148-406 (407)
16 KOG1375 Beta tubulin [Cytoskel 100.0 2.5E-49 5.3E-54 359.3 10.8 220 1-262 92-358 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 2E-39 4.4E-44 300.6 15.1 205 1-229 106-310 (328)
18 PF03953 Tubulin_C: Tubulin C- 99.9 5.9E-25 1.3E-29 177.3 6.7 94 116-229 1-94 (126)
19 smart00864 Tubulin Tubulin/Fts 99.7 2.4E-18 5.3E-23 148.2 3.6 93 1-99 100-192 (192)
20 cd02191 FtsZ FtsZ is a GTPase 99.6 1.9E-15 4.1E-20 138.9 10.0 171 1-191 102-274 (303)
21 cd02202 FtsZ_type2 FtsZ is a G 99.6 1.4E-15 3E-20 142.4 4.4 115 1-126 115-234 (349)
22 PF00091 Tubulin: Tubulin/FtsZ 99.5 6.5E-15 1.4E-19 129.1 3.4 75 1-78 141-215 (216)
23 TIGR00065 ftsZ cell division p 99.4 1.6E-13 3.5E-18 128.3 5.3 172 4-192 121-295 (349)
24 cd06060 misato Human Misato sh 99.4 3.4E-12 7.4E-17 123.9 12.3 168 1-176 167-347 (493)
25 cd02201 FtsZ_type1 FtsZ is a G 99.4 3.3E-13 7.1E-18 124.2 4.8 171 5-193 105-277 (304)
26 PRK13018 cell division protein 99.2 3.9E-11 8.4E-16 113.1 8.0 171 2-193 131-303 (378)
27 PRK09330 cell division protein 99.0 2.9E-10 6.2E-15 107.4 3.5 172 4-193 117-290 (384)
28 smart00865 Tubulin_C Tubulin/F 98.6 4.6E-08 1E-12 76.8 3.9 94 101-226 1-97 (120)
29 PF14881 Tubulin_3: Tubulin do 97.3 0.00026 5.6E-09 60.5 3.6 84 1-96 90-179 (180)
30 KOG2530 Members of tubulin/Fts 93.2 0.088 1.9E-06 50.5 3.6 100 1-112 220-326 (483)
31 COG0206 FtsZ Cell division GTP 91.3 0.13 2.9E-06 48.1 2.4 103 5-114 117-219 (338)
32 PF08259 Periviscerokin: Periv 39.9 12 0.00027 17.1 0.4 9 110-118 3-11 (11)
33 PF13174 TPR_6: Tetratricopept 32.7 38 0.00082 19.0 1.9 18 234-251 13-30 (33)
34 PF05086 Dicty_REP: Dictyostel 24.2 47 0.001 34.6 1.8 17 176-192 763-779 (911)
35 PF11458 Mistic: Membrane-inte 23.8 26 0.00055 25.6 -0.0 52 31-89 23-74 (84)
36 PF13097 CENP-U: CENP-A nucleo 23.4 97 0.0021 26.4 3.3 31 219-254 93-123 (175)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=3.3e-79 Score=553.82 Aligned_cols=242 Identities=49% Similarity=0.885 Sum_probs=237.9
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL 80 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~ 80 (275)
|||+|||+|+++||||.+.+|+|||.++.+|+||||||++|+++.|+|++||++++||+||++||.+.|++.+|+ |.++
T Consensus 147 ~GslLLerl~~eypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~-y~~l 225 (443)
T COG5023 147 LGSLLLERLREEYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPS-YDDL 225 (443)
T ss_pred HHHHHHHHHHHhcchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCC-hHHH
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecC
Q 047757 81 NHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADL 160 (275)
Q Consensus 81 N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~ 160 (275)
|+|||++||++|+++||||++|+|++++.+|||||||+||+.++|+|++...+..+++.++.+++++||+++|+|++|||
T Consensus 226 N~LIs~VmSsvTtslRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dp 305 (443)
T COG5023 226 NQLISTVMSSVTTSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDP 305 (443)
T ss_pred HHHHHHHHHhhhheeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeecccccccccccCcceeeeee-----------
Q 047757 161 RHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC----------- 229 (275)
Q Consensus 161 ~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~----------- 229 (275)
++|+|+++|+++||+++++||++++.++|.|+. .+||+|+|+|||+++|
T Consensus 306 r~g~y~~~~~l~rG~v~~~dV~~a~~~v~~k~~--------------------~~Fv~W~P~~~~vai~~~~P~~~~~~~ 365 (443)
T COG5023 306 RKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRT--------------------IQFVEWCPTGFKVAICKRPPSEPAEVD 365 (443)
T ss_pred CCCeeeehhHHHhcCCCHHHHHHHHHHHHhcCc--------------------ccccccCCcceeeeeeccCCcccccce
Confidence 999999999999999999999999999999999 9999999999999999
Q ss_pred --------------------------------------cCCChhhHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 047757 230 --------------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDATIDEDV 263 (275)
Q Consensus 230 --------------------------------------eGmee~eF~ea~e~l~~li~eY~~~~~~~~~~~~ 263 (275)
|||||+||+||||+|++|++||++++++.+++++
T Consensus 366 ~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~ 437 (443)
T COG5023 366 VSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDE 437 (443)
T ss_pred eeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccchh
Confidence 9999999999999999999999999998887554
No 2
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=1.7e-63 Score=477.63 Aligned_cols=243 Identities=84% Similarity=1.312 Sum_probs=233.2
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL 80 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~ 80 (275)
+||+|+|+|+|+|||+.+.+++|||+++.++++|||||++|++++|++++|++++|||+||+++|++++++++|+ |.+|
T Consensus 147 lgs~l~e~L~dey~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~-~~~l 225 (445)
T PTZ00010 147 MGTLLISKLREEYPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPT-YGDL 225 (445)
T ss_pred HHHHHHHHHHhhCCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCC-HHHH
Confidence 689999999999999999999999998779999999999999999999999999999999999999999999999 9999
Q ss_pred hhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecC
Q 047757 81 NHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADL 160 (275)
Q Consensus 81 N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~ 160 (275)
|+||||+|+++|+++||||.+|+|++++++||||||++||++++++|++......+.+++|.+|++++|+++++|++++|
T Consensus 226 N~lIaq~is~~t~~~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~ 305 (445)
T PTZ00010 226 NHLVSAVMSGVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADP 305 (445)
T ss_pred HHHHHhhccccccceecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCC
Confidence 99999999999999999999999999999999999999999999999998777778899999999999999999999999
Q ss_pred CCcchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeecccccccccccCcceeeeee-----------
Q 047757 161 RHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC----------- 229 (275)
Q Consensus 161 ~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~----------- 229 (275)
++|+|||+++++||++.++++.+++.+++.++. ++|++|+|++|++++|
T Consensus 306 ~~~k~la~~~~~RG~~~~~~~~~~~~~~~~~~~--------------------~~f~~W~p~~~~~~~~~~~~~~~~~s~ 365 (445)
T PTZ00010 306 RHGRYLTASALFRGRMSTKEVDEQMLNVQNKNS--------------------SYFVEWIPNNIKSSVCDIPPKGLKMSV 365 (445)
T ss_pred CcchhHHHHHHHcCCCCHHHHHHHHHHHHhhCC--------------------ccCccccCCCEEEeecCcCCcCccceE
Confidence 999999999999999999999999999999988 9999999999999887
Q ss_pred -----------------------------------cCCChhhHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q 047757 230 -----------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDATIDEDVE 264 (275)
Q Consensus 230 -----------------------------------eGmee~eF~ea~e~l~~li~eY~~~~~~~~~~~~~ 264 (275)
|||||+||.||+++|++|++||+++++...+.++|
T Consensus 366 ~~lsNstsi~~~~~~i~~~f~~m~~rrAflh~Y~~eGmee~ef~EA~~~l~~li~~Y~~~~~~~~~~~~~ 435 (445)
T PTZ00010 366 TFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATVEEEGE 435 (445)
T ss_pred EEecCCcHHHHHHHHHHHHHHHHHhcCchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 89999999999999999999999998877555544
No 3
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=6e-63 Score=473.81 Aligned_cols=241 Identities=38% Similarity=0.746 Sum_probs=230.8
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL 80 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~ 80 (275)
|||+|+|+|+|+|||+.+.+++|||+++.+++||||||++|++++|++++|++++|||+||+++|.+.++++.|+ |.+|
T Consensus 149 lgs~~le~l~d~y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~-~~dl 227 (450)
T PLN00221 149 LGSLLLERLSVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPT-YTNL 227 (450)
T ss_pred HHHHHHHHHHHhcccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCC-HHHH
Confidence 689999999999999999999999998788999999999999999999999999999999999999999999999 9999
Q ss_pred hhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecC
Q 047757 81 NHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADL 160 (275)
Q Consensus 81 N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~ 160 (275)
|+|||++|+++|+++||||++++|++++++||||||++||++++++|+++.....+.+++|.+|++++|++.++|++++|
T Consensus 228 N~lIa~~is~~T~s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~ 307 (450)
T PLN00221 228 NRLISQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDP 307 (450)
T ss_pred HHHHhhhcccccccccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCC
Confidence 99999999999999999999999999999999999999999999999998777777889999999999999999999999
Q ss_pred CCcchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeecccccccccccCcceeeeee-----------
Q 047757 161 RHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC----------- 229 (275)
Q Consensus 161 ~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~----------- 229 (275)
+.|+|||+++++||++.++++.+++.+++.++. +.|++|+|+++++++|
T Consensus 308 ~~~kyla~~~~~RG~~~~~~v~~~~~~~~~~~~--------------------~~f~~W~p~~~~~~i~~~~~~~~~~~~ 367 (450)
T PLN00221 308 RHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT--------------------IQFVDWCPTGFKCGINYQPPTVVPGGD 367 (450)
T ss_pred CcchHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--------------------ccccccCCCCEeeeecCCCCccCCCcc
Confidence 999999999999999999999999999998888 9999999999988765
Q ss_pred -------------------------------------------cCCChhhHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 047757 230 -------------------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDATIDED 262 (275)
Q Consensus 230 -------------------------------------------eGmee~eF~ea~e~l~~li~eY~~~~~~~~~~~ 262 (275)
|||||+||+||+++|++|+++|+++++...+++
T Consensus 368 ~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~~ 443 (450)
T PLN00221 368 LAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGE 443 (450)
T ss_pred ccccceeEEEecCCcHHHHHHHHHHHHHHHHHhhcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 899999999999999999999999988766544
No 4
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=5.5e-61 Score=460.04 Aligned_cols=238 Identities=39% Similarity=0.753 Sum_probs=228.3
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL 80 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~ 80 (275)
|||+|+|+|+|+|||+.+.+++|||+.+.++++|||||++|+|++|++++|++++|||++|+++|.+.+++..|+ |.+|
T Consensus 149 lgs~l~e~l~d~yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~-~~~~ 227 (448)
T PTZ00335 149 LGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPT-YTNL 227 (448)
T ss_pred HHHHHHHHHHHhccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCC-HHHH
Confidence 699999999999999999999999998778999999999999999999999999999999999999999999999 9999
Q ss_pred hhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecC
Q 047757 81 NHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADL 160 (275)
Q Consensus 81 N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~ 160 (275)
|++||++|+++|+++||||++++|++++++||||||++||++++++|+++.....++.++|.+|++++|+++++|++++|
T Consensus 228 N~~Ia~~is~~t~~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~ 307 (448)
T PTZ00335 228 NRLIAQVISSLTASLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDP 307 (448)
T ss_pred HHHHHhhhcccccccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCC
Confidence 99999999999999999999999999999999999999999999999998777778899999999999999999999999
Q ss_pred CCcchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeecccccccccccCcceeeeee-----------
Q 047757 161 RHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC----------- 229 (275)
Q Consensus 161 ~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~----------- 229 (275)
+.|+|||+++++||++..+++.+++.++++|+. ++|++|+|++|++++|
T Consensus 308 ~~~~~ls~~~~~RG~~~~~~i~~~~~~~~~~~~--------------------~~f~~W~p~~~~~~~~~~~~~~~~~~~ 367 (448)
T PTZ00335 308 RHGKYMACCLMYRGDVVPKDVNAAIATIKTKRT--------------------IQFVDWCPTGFKCGINYQPPTVVPGGD 367 (448)
T ss_pred CccchHHHHHHHcCCCCHHHHHHHHHHHHhhCC--------------------CcCCccCCCCEeeeecCCCCccCCCcc
Confidence 999999999999999999999999999999988 9999999999988775
Q ss_pred -------------------------------------------cCCChhhHHHHHHHHHHHHHHHHHHHhcCC
Q 047757 230 -------------------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDATI 259 (275)
Q Consensus 230 -------------------------------------------eGmee~eF~ea~e~l~~li~eY~~~~~~~~ 259 (275)
|||||+||+||+++|++|++||+++++...
T Consensus 368 ~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~ 440 (448)
T PTZ00335 368 LAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA 440 (448)
T ss_pred ccccceEEEEecCCcHHHHHHHHHHHHHHHHHhhcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccch
Confidence 899999999999999999999999975543
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=1.8e-60 Score=457.36 Aligned_cols=251 Identities=88% Similarity=1.345 Sum_probs=236.5
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL 80 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~ 80 (275)
+|++|+|+|+|+|||+.+.+++|||+++.++++|||||++|+|++|++++|++++|||++|+++|.+.+++..|+ |.++
T Consensus 147 ~gs~l~~~l~~~y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~s-f~~~ 225 (447)
T PLN00220 147 MGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPS-FGDL 225 (447)
T ss_pred HHHHHHHHHHHhccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCC-hHHH
Confidence 589999999999999999999999998789999999999999999999999999999999999999999999999 9999
Q ss_pred hhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecC
Q 047757 81 NHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADL 160 (275)
Q Consensus 81 N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~ 160 (275)
|++||+.++++|+++||||.++.+++++++||||||++||++++++|+.......+++++|.++++++|++++++++++|
T Consensus 226 N~lIa~~is~it~slRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~ 305 (447)
T PLN00220 226 NHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADP 305 (447)
T ss_pred HhHhhccccccchhhccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCC
Confidence 99999999999999999999999999999999999999999999999988766667889999999999999999999999
Q ss_pred CCcchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeecccccccccccCcceeeeee-----------
Q 047757 161 RHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC----------- 229 (275)
Q Consensus 161 ~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~----------- 229 (275)
++|+|||+++++||++.++++.+++.+++.++. ++|++|+|++|++++|
T Consensus 306 ~~gk~la~~~~~RG~~~~~ev~~~~~~l~~~~~--------------------~~f~~W~p~~~~~~~~~~~~~~~~~s~ 365 (447)
T PLN00220 306 RHGRYLTASAMFRGKMSTKEVDEQMINVQNKNS--------------------SYFVEWIPNNVKSSVCDIPPKGLKMAS 365 (447)
T ss_pred CCchhHHHHHHHcCCCCHHHHHHHHHHHHhhCC--------------------CccccccCCCEEEeecCCCCCCcceee
Confidence 999999999999999999999999999998888 9999999999999988
Q ss_pred -----------------------------------cCCChhhHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCCCCC
Q 047757 230 -----------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDATIDEDVEYEDDDVPA 272 (275)
Q Consensus 230 -----------------------------------eGmee~eF~ea~e~l~~li~eY~~~~~~~~~~~~~~~~~~~~~ 272 (275)
|||||+||.||+++|++|+++|+++++...+..+|++||++|+
T Consensus 366 ~~l~N~t~i~~~~~~i~~~f~~m~~rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~~~~~~~~~~~~~~~~~~~ 443 (447)
T PLN00220 366 TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEEE 443 (447)
T ss_pred EEecCchHHHHHHHHHHHHHHHHHhcCcchhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhccccccccccccccch
Confidence 8999999999999999999999999876544445565555554
No 6
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=5.2e-60 Score=451.52 Aligned_cols=233 Identities=81% Similarity=1.267 Sum_probs=225.4
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL 80 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~ 80 (275)
+|++|+|+|+|+|||+.+.+++|||+.+.++++|||||++|+|++|++++|++++|||+||+++|.+++++..|+ |.+|
T Consensus 146 ~gs~l~e~l~d~y~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~-~~~~ 224 (425)
T cd02187 146 MGTLLISKIREEYPDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPT-YGDL 224 (425)
T ss_pred HHHHHHHHHHHhcCCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCC-HHHH
Confidence 689999999999999999999999998667999999999999999999999999999999999999999999999 9999
Q ss_pred hhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecC
Q 047757 81 NHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADL 160 (275)
Q Consensus 81 N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~ 160 (275)
|++||++|+++|+++||||.+|.|++++++||||||++||++++++|++......+.+++|.+|++++|+++++|+.++|
T Consensus 225 N~~ia~~is~~t~s~Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~ 304 (425)
T cd02187 225 NHLVSAVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDP 304 (425)
T ss_pred HHHHhccccccceeeecCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCC
Confidence 99999999999999999999999999999999999999999999999998766667889999999999999999999999
Q ss_pred CCcchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeecccccccccccCcceeeeee-----------
Q 047757 161 RHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC----------- 229 (275)
Q Consensus 161 ~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~----------- 229 (275)
++|+|||+++++||++.++++.+++.+++.+.. ++|++|+|++|++++|
T Consensus 305 ~~~~~la~~~~~RG~~~~~~~~~~~~~~~~~~~--------------------~~f~~W~p~~~~~~~~~~~~~~~~~s~ 364 (425)
T cd02187 305 RHGRYLTAAAIFRGRVSMKEVDEQMLNVQNKNS--------------------SYFVEWIPNNVKTAVCDIPPRGLKMSA 364 (425)
T ss_pred CcchHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--------------------CcCCCcCCCCEeeeecCCCCCCcceeE
Confidence 999999999999999999999999999999988 9999999999999988
Q ss_pred -----------------------------------cCCChhhHHHHHHHHHHHHHHHHHH
Q 047757 230 -----------------------------------EGMDEMEFTEAESNMNDLVAEYQQY 254 (275)
Q Consensus 230 -----------------------------------eGmee~eF~ea~e~l~~li~eY~~~ 254 (275)
|||||+||.||+++|++|++||+++
T Consensus 365 ~~l~N~t~i~~~~~~i~~~f~~m~~kkAflh~Y~~~G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 365 TFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred EEecCCcHHHHHHHHHHHHHHHHHhcCcchhhhhccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999986
No 7
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=1.4e-59 Score=450.75 Aligned_cols=239 Identities=31% Similarity=0.593 Sum_probs=225.4
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCC-CCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccc
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSP-KVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGD 79 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~-~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~ 79 (275)
+||+|+|+|+|+|||+.+.+++|||++ ..+++||||||++|+|++|++++|++++|||+||++||.+++++++|+ |.+
T Consensus 149 lgs~lle~L~d~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~-~~d 227 (454)
T PLN00222 149 MGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPT-FAQ 227 (454)
T ss_pred HHHHHHHHHHhhcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCC-HHH
Confidence 689999999999999999999999986 368999999999999999999999999999999999999999999999 999
Q ss_pred hhhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccC-CCccccccCHHHHHHHhcccCCcceee
Q 047757 80 LNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSR-GSQQYQSLSVPEITHQMWDDRNMMCAA 158 (275)
Q Consensus 80 ~N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~-~~~~~~~~t~~~l~~~~~~~~~~~~~~ 158 (275)
||+||||+|+++|+++||||.+|+|++++++||||||++||++++++|+... ....+++.++.++++++|+++++|+.+
T Consensus 228 lN~lIA~~ls~~T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~ 307 (454)
T PLN00222 228 TNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSS 307 (454)
T ss_pred HHHHhccccCCcccccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeec
Confidence 9999999999999999999999999999999999999999999999999764 234567889999999999999999999
Q ss_pred cCCC-----cchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeecccccccccccCcceeeeee----
Q 047757 159 DLRH-----GRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC---- 229 (275)
Q Consensus 159 ~~~~-----g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~---- 229 (275)
+|+. |+|||+++++||++.++++.+++.+++.++. ++|++|+|++||+++|
T Consensus 308 ~~~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~~~~~~~--------------------~~fv~W~p~~~k~~~~~~~~ 367 (454)
T PLN00222 308 YARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKL--------------------ANFIEWGPASIQVALSRKSP 367 (454)
T ss_pred CCccccccccchHHHHHHHhCCCCHHHHHHHHHHHhhhCC--------------------ccccccCCCCEeeeeccCCC
Confidence 9988 9999999999999999999999999999988 9999999999999887
Q ss_pred ---------------------------------------------cCCC----hhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 047757 230 ---------------------------------------------EGMD----EMEFTEAESNMNDLVAEYQQYQDATID 260 (275)
Q Consensus 230 ---------------------------------------------eGme----e~eF~ea~e~l~~li~eY~~~~~~~~~ 260 (275)
|||+ |+||+||+++|++|++||++++...+.
T Consensus 368 ~~~~~~~~s~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~~y~ 447 (454)
T PLN00222 368 YVQTAHRVSGLMLANHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPDYI 447 (454)
T ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 8993 899999999999999999999765553
No 8
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=4.3e-59 Score=445.08 Aligned_cols=230 Identities=32% Similarity=0.649 Sum_probs=221.4
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCC-CccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccc
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKV-SDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGD 79 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~-~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~ 79 (275)
+||+|+|+|+|+|||+.+.+++|||++.. +++||||||++|+|++|++++|++++|||++|+++|++.++++.|+ |.+
T Consensus 147 ~gs~l~e~L~d~y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~-~~~ 225 (431)
T cd02188 147 MGSYLLERLNDRYPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPT-FDQ 225 (431)
T ss_pred HHHHHHHHHHhHcCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCC-HHH
Confidence 58999999999999999999999998753 5899999999999999999999999999999999999999999999 999
Q ss_pred hhhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCC-CccccccCHHHHHHHhcccCCcceee
Q 047757 80 LNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRG-SQQYQSLSVPEITHQMWDDRNMMCAA 158 (275)
Q Consensus 80 ~N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~-~~~~~~~t~~~l~~~~~~~~~~~~~~ 158 (275)
||++||++|+++|+++||||.+|+|++++++||||||++||++++++|++... ...+..++|.+|++++|++.|+|+++
T Consensus 226 ~N~~ia~~ls~~t~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~ 305 (431)
T cd02188 226 INSLVSTVMSASTTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVST 305 (431)
T ss_pred HHHHHhccCCCcccceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeec
Confidence 99999999999999999999999999999999999999999999999999876 46778899999999999999999999
Q ss_pred cC-CCcchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeecccccccccccCcceeeeee--------
Q 047757 159 DL-RHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC-------- 229 (275)
Q Consensus 159 ~~-~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~-------- 229 (275)
+| ++|||||+++++||++.++++.+++.++|.+.. ++|++|+|++||+++|
T Consensus 306 ~~~~~~k~la~~~~~RG~~~~~~~~~~~~~lk~~~~--------------------~~f~~W~p~~~~~~~~~~~~~~~~ 365 (431)
T cd02188 306 ATRKNGCYISILNIIQGEVDPTQVHKSLQRIRERRL--------------------ANFIPWGPASIQVALSKKSPYVPT 365 (431)
T ss_pred CCCccchhHHHHHHHcCCCCHHHHHHHHHHHHhhcc--------------------ccCcccCCCCEEEEEeccCCccCC
Confidence 99 999999999999999999999999999999888 8999999999999887
Q ss_pred -----------------------------------------cCCC---hhhHHHHHHHHHHHHHHH
Q 047757 230 -----------------------------------------EGMD---EMEFTEAESNMNDLVAEY 251 (275)
Q Consensus 230 -----------------------------------------eGme---e~eF~ea~e~l~~li~eY 251 (275)
|||| |+||+||+++|++|++||
T Consensus 366 ~~~~s~~~lsNst~I~~~f~~i~~kf~~mf~krAflH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 366 AHRVSGLMLANHTSIASLFERILKQFDKLRKRRAFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred CCceeEEEecCChHHHHHHHHHHHHHHHHHhhCchhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 8999 999999999999999998
No 9
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=2.1e-58 Score=441.28 Aligned_cols=233 Identities=39% Similarity=0.760 Sum_probs=224.1
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL 80 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~ 80 (275)
+||+|+|+|+|+|||+.+.+++|||+.+.++++|||||++|+|++|++++|++++|||++|+++|.+.++++.|+ |.+|
T Consensus 148 lgs~l~e~l~d~y~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~-~~~l 226 (434)
T cd02186 148 FGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPT-YTNL 226 (434)
T ss_pred HHHHHHHHHHHhcCccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCC-HHHH
Confidence 689999999999999999999999998778999999999999999999999999999999999999999999999 9999
Q ss_pred hhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecC
Q 047757 81 NHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADL 160 (275)
Q Consensus 81 N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~ 160 (275)
|++||++|+++|+++||+|.++.|++++++||||||++||++++++|+++.....++.++|.+|++++|+++++|+.++|
T Consensus 227 N~iIa~~l~~~t~~~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~ 306 (434)
T cd02186 227 NRLIAQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDP 306 (434)
T ss_pred HHHHHHHhhccccceecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCC
Confidence 99999999999999999999999999999999999999999999999998777777889999999999999999999999
Q ss_pred CCcchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeecccccccccccCcceeeeee-----------
Q 047757 161 RHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC----------- 229 (275)
Q Consensus 161 ~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~----------- 229 (275)
+.|+|||+++++||++.++++.+++.+++.+.. +.|++|+|++|++++|
T Consensus 307 ~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~~~--------------------~~f~~W~p~~~~~~~~~~~~~~~~~~~ 366 (434)
T cd02186 307 RHGKYMACCLLYRGDVVPKDVNAAVATIKTKRT--------------------IQFVDWCPTGFKVGINYQPPTVVPGGD 366 (434)
T ss_pred cchhHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--------------------CcCcccCCCcEeeeecCCCCccCCCcc
Confidence 999999999999999999999999999988888 9999999999988775
Q ss_pred -------------------------------------------cCCChhhHHHHHHHHHHHHHHHHHH
Q 047757 230 -------------------------------------------EGMDEMEFTEAESNMNDLVAEYQQY 254 (275)
Q Consensus 230 -------------------------------------------eGmee~eF~ea~e~l~~li~eY~~~ 254 (275)
|||||+||+||+++|++|++||+++
T Consensus 367 ~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 367 LAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 434 (434)
T ss_pred ccccceEEEEecCchHHHHHHHHHHHHHHHHHhhcchhhhhcCcCCchHHHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999863
No 10
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=1.5e-57 Score=437.35 Aligned_cols=233 Identities=27% Similarity=0.540 Sum_probs=221.6
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCC-------
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTT------- 73 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~------- 73 (275)
+|++|+|+|+|+|||+.+++++|||+. .+++||||||++|+|++|++++|+++++||++|+++|.+.++++.
T Consensus 148 lgs~lle~l~d~y~~~~~~~~~V~P~~-~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~ 226 (465)
T PTZ00387 148 LGTRILGMLEDEFPHVFRFCPVVFPSA-VDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGN 226 (465)
T ss_pred HHHHHHHHHHHhcccCceeeeEecCCC-CCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccccc
Confidence 589999999999999999999999996 799999999999999999999999999999999999999888774
Q ss_pred --------------------CCcccchhhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCC
Q 047757 74 --------------------PAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGS 133 (275)
Q Consensus 74 --------------------p~~~~~~N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~ 133 (275)
|+ |.+||++||++|+++|+++||||.+|+|++++.+||||||++||++++++|+.....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~-~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~ 305 (465)
T PTZ00387 227 IKRGPQPHKYSVAKPTETKKLP-YDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKD 305 (465)
T ss_pred cccccccccccccccccccccc-HHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhh
Confidence 88 999999999999999999999999999999999999999999999999999988766
Q ss_pred ccccccCHHHHHHHhcccCCcceeecCCCcchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeecccc
Q 047757 134 QQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGST 213 (275)
Q Consensus 134 ~~~~~~t~~~l~~~~~~~~~~~~~~~~~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (275)
..+..++|.+|++++|++.++|+.++|+.|+|||+++++||++.++++.+.+.++|.+
T Consensus 306 ~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~~---------------------- 363 (465)
T PTZ00387 306 VAVGPRRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKEQ---------------------- 363 (465)
T ss_pred cccccCCHHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhcc----------------------
Confidence 7778899999999999999999999999999999999999999999999999998644
Q ss_pred cccccccCcceeeeee---------------------------------------------cCCChhhHHHHHHHHHHHH
Q 047757 214 SYFVEWIPNNVKSSVC---------------------------------------------EGMDEMEFTEAESNMNDLV 248 (275)
Q Consensus 214 ~~fv~w~p~~~~~~~~---------------------------------------------eGmee~eF~ea~e~l~~li 248 (275)
++|++|+|++|++++| ||||++||+||+++|++|+
T Consensus 364 ~~f~~W~p~~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~egmee~eF~ea~~~l~~li 443 (465)
T PTZ00387 364 LNMIYWNEDGFKTGLCNVSPLGQPYSLLCLANNCCIRNKFESMLERFNKLYKRKSHVHHYTEYLEQAYFDETLETIQNLI 443 (465)
T ss_pred ccccccCCCceEEEeeccCCCCCceeEEEecCChHHHHHHHHHHHHHHHHHhhcchHHhhhcccchHHHHHHHHHHHHHH
Confidence 7899999999999988 8999999999999999999
Q ss_pred HHHHHHHhc
Q 047757 249 AEYQQYQDA 257 (275)
Q Consensus 249 ~eY~~~~~~ 257 (275)
+||++++..
T Consensus 444 ~~Y~~~~~~ 452 (465)
T PTZ00387 444 DDYAYLQTA 452 (465)
T ss_pred HHHHHHhhc
Confidence 999999743
No 11
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=3.3e-54 Score=406.05 Aligned_cols=217 Identities=29% Similarity=0.602 Sum_probs=207.7
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL 80 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~ 80 (275)
+|++|+|+|+|+|||+.+.+++|||+. .++++|+|||++|+|++|++++|+++++||++|+ + |.++
T Consensus 116 ~gs~l~e~l~~~y~~~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~-~~~~ 181 (379)
T cd02190 116 LGTYVLELLADEFPEVYRFVTSVYPSA-DDDVITSPYNSVLALRELIEHADCVLPIENQALV------------P-FDAM 181 (379)
T ss_pred HHHHHHHHHHHhcCccceEEEeecCCC-CCCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------H-HHHH
Confidence 589999999999999999999999998 5999999999999999999999999999999999 5 9999
Q ss_pred hhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecC
Q 047757 81 NHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADL 160 (275)
Q Consensus 81 N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~ 160 (275)
|++||+.|+++|+++||||.+|.|++++.+||||||++||++++++|++......+++.++.+|++++|+++++|+.++|
T Consensus 182 N~~ia~~i~~~t~~~rf~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~ 261 (379)
T cd02190 182 NSIVANLLLNLTSSMRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADP 261 (379)
T ss_pred HHHHHhhhcCccceeecccccccchhhhccccccCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCC
Confidence 99999999999999999999999999999999999999999999999998766677889999999999999999999999
Q ss_pred CCcchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeecccccccccccCcceeeeee-----------
Q 047757 161 RHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC----------- 229 (275)
Q Consensus 161 ~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~----------- 229 (275)
++|+||++++++||++.+.++.+++.+++.+ .+|++|+|++|++++|
T Consensus 262 ~~~kyls~~~i~RG~~~~~ei~~~~~~l~~~----------------------~~fv~W~p~~~~~~~~~~~~~~~~~s~ 319 (379)
T cd02190 262 KHGLYLACALLVRGNVSVSDLRRNIERLKPK----------------------LKFVKWNQEGWKIGLCSVPPVGHSYSL 319 (379)
T ss_pred CcchHHHHHHHHcCCCCHHHHHHHHHHHhcc----------------------CcCcCcCCCcEEEeecccCCCCcceeE
Confidence 9999999999999999999999999988765 6799999999999888
Q ss_pred -----------------------------------cCCChhhHHHHHHHHHHHHHHHHH
Q 047757 230 -----------------------------------EGMDEMEFTEAESNMNDLVAEYQQ 253 (275)
Q Consensus 230 -----------------------------------eGmee~eF~ea~e~l~~li~eY~~ 253 (275)
|||||+||+||++++++|++||++
T Consensus 320 ~~lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~~eG~ee~ef~ea~~~l~~li~~Y~~ 378 (379)
T cd02190 320 LCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQVGMEQGDFTEALESISNLIDEYDY 378 (379)
T ss_pred EEecCccHHHHHHHHHHHHHHHHHhcccchhhhhCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999986
No 12
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=2.5e-53 Score=385.72 Aligned_cols=238 Identities=31% Similarity=0.610 Sum_probs=221.0
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCC-CCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccc
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSP-KVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGD 79 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~-~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~ 79 (275)
|||+|+|+|+|.||||.+.+++|||.. .++||||||||+||+|++|++++||++++||.||++||.+++++.+|+ |++
T Consensus 149 lGS~llErL~drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~pt-F~~ 227 (448)
T KOG1374|consen 149 LGSFLLERLNDRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPT-FSQ 227 (448)
T ss_pred hHHHHHHHHHHhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCC-HHH
Confidence 699999999999999999999999987 479999999999999999999999999999999999999999999999 999
Q ss_pred hhhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCcc--ccccCHHHHHHHhcccCCccee
Q 047757 80 LNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQ--YQSLSVPEITHQMWDDRNMMCA 157 (275)
Q Consensus 80 ~N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~--~~~~t~~~l~~~~~~~~~~~~~ 157 (275)
+|+|||.+|++.|+++||||+++.++..|...|||+|++|||+++|.|++...... +++.++.+.+++++.++++|++
T Consensus 228 iNqLvstims~st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs 307 (448)
T KOG1374|consen 228 INQLVSTIMSASTTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVS 307 (448)
T ss_pred HHHHHHHHHhhccccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhh
Confidence 99999999999999999999999999999999999999999999999999875544 4888999999999999999998
Q ss_pred ecC---CCcchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeecccccccccccCcceeeeee-----
Q 047757 158 ADL---RHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC----- 229 (275)
Q Consensus 158 ~~~---~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~----- 229 (275)
..+ .+..|+++.++..|.+++.+|.+++.+++.++. .+|+.|.|..+++++.
T Consensus 308 ~~~~~~~~~~~~si~n~iqg~vdp~~v~~s~~r~~dr~~--------------------a~f~~w~~~si~val~k~spy 367 (448)
T KOG1374|consen 308 TADDLSGNPCYISILNIIQGEVDPTQVHKSLQRIRDRKL--------------------ANFIPWGPASIQVALSKKSPY 367 (448)
T ss_pred ccccccCCcchHhHHhhhhcccCHHHHHHHHHHHHhccc--------------------ccCCCCCCHHHHhhhhcCCCc
Confidence 765 234899999999999999999999999999888 8888888888876543
Q ss_pred --------------------------------------------cCCChh---hHHHHHHHHHHHHHHHHHHHhcCC
Q 047757 230 --------------------------------------------EGMDEM---EFTEAESNMNDLVAEYQQYQDATI 259 (275)
Q Consensus 230 --------------------------------------------eGmee~---eF~ea~e~l~~li~eY~~~~~~~~ 259 (275)
+||+++ ||.|+|+.+++|++||+.+++..+
T Consensus 368 ~~~~~~vSglml~N~t~i~~lfe~~~~qydklrk~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~~~Y 444 (448)
T KOG1374|consen 368 VQRAHRVSGLMLANSTSIVSLFERILGQYDKLRKKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQPDY 444 (448)
T ss_pred cccccceeeeeeccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 799888 999999999999999999966544
No 13
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=2.5e-51 Score=387.52 Aligned_cols=230 Identities=47% Similarity=0.821 Sum_probs=218.2
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL 80 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~ 80 (275)
+|++|+|+|+|+|||+.+.+++|+|+...++++++|||++|++++|.+++|+++++||++|+++|.+.+.+..|+ |.++
T Consensus 106 ~gs~l~e~l~d~y~~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~-~~~~ 184 (382)
T cd06059 106 LGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPS-FDDL 184 (382)
T ss_pred HHHHHHHHHHHhcCccceEeEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCC-hHHH
Confidence 589999999999999999999999998666699999999999999999999999999999999999999999999 9999
Q ss_pred hhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecC
Q 047757 81 NHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADL 160 (275)
Q Consensus 81 N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~ 160 (275)
|++||++|+++|+++||||.++.|++++.+||||||++||++++++|+++.....+.+.++.++++++|.+.++|+.+++
T Consensus 185 N~iia~~l~~it~~~r~~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 264 (382)
T cd06059 185 NNIIAQIISSITASLRFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDP 264 (382)
T ss_pred HHHHHHhhcccccccccCCCcCCCHHHHhhhcCCCCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCC
Confidence 99999999999999999999999999999999999999999999999998766667889999999999999999999999
Q ss_pred CCcchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeecccccccccccCcceeeeee-----------
Q 047757 161 RHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC----------- 229 (275)
Q Consensus 161 ~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~----------- 229 (275)
+.|+||++++++||+...+++.+.+.+++.+.. .. +|+|+++++++|
T Consensus 265 ~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~~~--------------------~~--~w~p~~~~~~~~~~~~~~~~~~s 322 (382)
T cd06059 265 TKGRYLAAALIFRGDVFQSEIQEAINKLKNKLN--------------------IQ--SWIPDGFKVSNCKKPPRAELGKS 322 (382)
T ss_pred CcchHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--------------------cc--cCCCCcEEEEecCCCCCcCccee
Confidence 999999999999999999999999999988765 44 899999998877
Q ss_pred ------------------------------------cCCChhhHHHHHHHHHHHHHHHHH
Q 047757 230 ------------------------------------EGMDEMEFTEAESNMNDLVAEYQQ 253 (275)
Q Consensus 230 ------------------------------------eGmee~eF~ea~e~l~~li~eY~~ 253 (275)
|||||+||.||++++++|+++|++
T Consensus 323 ~~~l~Nstsi~~~l~~i~~~f~~m~~~rAflh~Y~~~G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 323 ALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGEGMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred EEEecCchHHHHHHHHHHHHHHHHHhhCcchhhhcCcCCchHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999973
No 14
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=6.5e-51 Score=390.90 Aligned_cols=225 Identities=22% Similarity=0.453 Sum_probs=206.6
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL 80 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~ 80 (275)
+|++|+|+|+|+||++.+.+++|||+. .++++|||||++|++++|++++|++++|||++|+++|++.++++.|+ |.+|
T Consensus 143 ~gs~l~e~l~d~y~~~~~~~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~-~~~~ 220 (446)
T cd02189 143 LGSRVTELLRDEYPESLLLNIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVS-LSDI 220 (446)
T ss_pred HHHHHHHHHHHhcCccceeeeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCC-HHHH
Confidence 589999999999999999999999986 79999999999999999999999999999999999999999999999 9999
Q ss_pred hhhhHhhccCCcccccC-C-------CCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhc---
Q 047757 81 NHLISGTMSGVTCCLRF-P-------GQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMW--- 149 (275)
Q Consensus 81 N~lIA~~ls~~t~~~RF-~-------g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~--- 149 (275)
|++||++|+++|++.|| + |.++.+++++++||||+|++||++++++|+++.....++.++|.+|+++++
T Consensus 221 N~~Ia~~l~~~~~~~r~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~ 300 (446)
T cd02189 221 NKVIAHQLASLLQPSLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQML 300 (446)
T ss_pred HHHHHHHHHHHhhHhhccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhh
Confidence 99999999999999987 6 346999999999999999999999999999987777788999999999866
Q ss_pred ccCCccee-------------------ecCCCcchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeec
Q 047757 150 DDRNMMCA-------------------ADLRHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLR 210 (275)
Q Consensus 150 ~~~~~~~~-------------------~~~~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 210 (275)
.+.++|.. ++++.++||++++++||+...+++...+ ++.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~-----~~~----------------- 358 (446)
T cd02189 301 IAGSFMEEGIDWTVRPEGSAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKF-----RDP----------------- 358 (446)
T ss_pred ccccccccccccccccccccccccccccCCcccceeeeeeeeeCCCchHHHHHHH-----hcc-----------------
Confidence 67777755 4678899999999999998888876443 345
Q ss_pred ccccccccccCcceeeeee------------------------------------------------cCCChhhHHHHHH
Q 047757 211 GSTSYFVEWIPNNVKSSVC------------------------------------------------EGMDEMEFTEAES 242 (275)
Q Consensus 211 ~~~~~fv~w~p~~~~~~~~------------------------------------------------eGmee~eF~ea~e 242 (275)
+.|++|+|+++++++| |||||+||.||++
T Consensus 359 ---~~f~~W~p~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~ 435 (446)
T cd02189 359 ---LLYVNWSPSPVRFSISSHKRSFSKYEKSVTLVSNSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFA 435 (446)
T ss_pred ---CcCCCcCCCCEeeeecCCCCCcCCcceeEEEEeCCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHH
Confidence 8899999999998877 8999999999999
Q ss_pred HHHHHHHHHH
Q 047757 243 NMNDLVAEYQ 252 (275)
Q Consensus 243 ~l~~li~eY~ 252 (275)
+|++|++||+
T Consensus 436 ~l~~li~~Y~ 445 (446)
T cd02189 436 TLEQIIASYK 445 (446)
T ss_pred HHHHHHHHhc
Confidence 9999999996
No 15
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=1.3e-50 Score=366.80 Aligned_cols=233 Identities=37% Similarity=0.668 Sum_probs=215.8
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL 80 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~ 80 (275)
+||++||+|..+|+||.+..|+|||++..+..+|+|||++|+.+...+++|+++++||+++|+||++++.+++|+ |.++
T Consensus 148 ~~s~lmerls~~~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPt-yt~l 226 (407)
T KOG1376|consen 148 LGSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPT-YTNL 226 (407)
T ss_pred ccchhhhhhhhhhhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCcc-ccch
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred hhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecC
Q 047757 81 NHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADL 160 (275)
Q Consensus 81 N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~ 160 (275)
|++|+|++|++|+++||.|.+|.||.++++|||||| + |+|+.+..+..+.++++.+++.++|.+.|+|++|||
T Consensus 227 nr~i~qVvSsitaSlrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP 299 (407)
T KOG1376|consen 227 NRLIAQVVSSITASLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDP 299 (407)
T ss_pred hhhHHhhhcccccccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCC
Confidence 999999999999999999999999999999999999 2 999999888889999999999999999999999999
Q ss_pred CCcchhhheeeccccCChhHHHHHHHHHhhhccCCc--cccccchhheee-----ec-------------------cccc
Q 047757 161 RHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSA--RYFGLGFLALVV-----LR-------------------GSTS 214 (275)
Q Consensus 161 ~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~--~~~~~~~~~~~~-----~~-------------------~~~~ 214 (275)
++|||+|||++|||++.|++++.++..+|.|++-+. ..+|.+.+|.+. ++ .++.
T Consensus 300 ~~gkyma~cllyrgdvvP~~v~~A~a~ikt~rt~qfvd~~v~gg~lakv~Ravcmlsnttai~eawarld~kfdLmyakr 379 (407)
T KOG1376|consen 300 RHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKR 379 (407)
T ss_pred ccchHHHHHHhccCCcCcccchHHHHhhhhccccccceeeccCcchhhhceeeEecCCCcHHHHHHhhcchhhhhhhcch
Confidence 999999999999999999999999999999877333 446666666443 11 5557
Q ss_pred ccccccCcceeeeeecCCChhhHHHHHHHHHHHH
Q 047757 215 YFVEWIPNNVKSSVCEGMDEMEFTEAESNMNDLV 248 (275)
Q Consensus 215 ~fv~w~p~~~~~~~~eGmee~eF~ea~e~l~~li 248 (275)
.||.|.+. ||||||||+||||+|+.|+
T Consensus 380 afVhwyvg-------egmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 380 AFVHWYVG-------EGMEEGEFSEAREDLAALE 406 (407)
T ss_pred heeeeccC-------CCccccchhhhhhhHHhhc
Confidence 78888655 9999999999999999886
No 16
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=100.00 E-value=2.5e-49 Score=359.35 Aligned_cols=220 Identities=80% Similarity=1.244 Sum_probs=210.8
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL 80 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~ 80 (275)
+|++++.+|+++||.++..+++|+|+++ +++||+|||+.|+++.|.+++|.+++.||+||++||.+.+++..|+
T Consensus 92 ~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~cidNeal~dic~~~lkl~~~~----- 165 (369)
T KOG1375|consen 92 MGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCIDNEALYDICFRTLKLKTPS----- 165 (369)
T ss_pred cchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCcccccccHHHHHHHhhhhcccCCC-----
Confidence 5899999999999999999999999996 9999999999999999999999999999999999999999998887
Q ss_pred hhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecC
Q 047757 81 NHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADL 160 (275)
Q Consensus 81 N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~ 160 (275)
++|.++||+|++|.|++++..|+||+|++||++++++|++.....+++.++++++++++|+.+|+|..||
T Consensus 166 ---------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~~a~tv~eltqq~fdaknmm~a~d- 235 (369)
T KOG1375|consen 166 ---------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMTACD- 235 (369)
T ss_pred ---------CceeecccccccchhhhhhhhccCCCcchhhccccccccccccccccccccccccccccccCcchhhhhh-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCcchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeecccccccccccCcceeeeee-----------
Q 047757 161 RHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC----------- 229 (275)
Q Consensus 161 ~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~----------- 229 (275)
||+++.++|| +.+++++.+.++++|.+ .+|++|+|+++|..+|
T Consensus 236 ----yLt~a~~~rG--smkevDeqm~~vqnk~s--------------------s~f~~wiP~~vktavCdipp~glkms~ 289 (369)
T KOG1375|consen 236 ----YLTVAAMFRG--SMKEVDEQMLNVQNKNS--------------------SYFVEWIPNNVKTAVCDIPPGGLKMSS 289 (369)
T ss_pred ----hhhhHHHhcc--chhhhHHHhhhccccCc--------------------chhhhhcccccceeeccCCCccccccc
Confidence 9999999999 99999999999999999 9999999999999999
Q ss_pred -----------------------------------cCCChhhHHHHHHHHHHHHHHHHHH-HhcCCCcc
Q 047757 230 -----------------------------------EGMDEMEFTEAESNMNDLVAEYQQY-QDATIDED 262 (275)
Q Consensus 230 -----------------------------------eGmee~eF~ea~e~l~~li~eY~~~-~~~~~~~~ 262 (275)
|||||+||+||..++++||.+|++| ++.+.+++
T Consensus 290 tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~~~~~~~~~ 358 (369)
T KOG1375|consen 290 TFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQQDATAEEE 358 (369)
T ss_pred cccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhhcccccc
Confidence 9999999999999999999999999 55555443
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=2e-39 Score=300.63 Aligned_cols=205 Identities=41% Similarity=0.775 Sum_probs=192.5
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL 80 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~ 80 (275)
+|++|+|+|+|+|||+.+.+++|+|+...+ ++++|||++|++++|.+++|+++++||++|+++|.+.+++..+. |.++
T Consensus 106 ~~~~i~e~l~d~y~~~~~~~~~v~P~~~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~-~~~~ 183 (328)
T cd00286 106 LGPVLAERLKDEYPKRLKITFSILPGPDEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPT-FDHI 183 (328)
T ss_pred HHHHHHHHHHHHcCccceeEEEecCCCCCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCC-HHHH
Confidence 478999999999999999999999997433 79999999999999999999999999999999999999888999 9999
Q ss_pred hhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecC
Q 047757 81 NHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADL 160 (275)
Q Consensus 81 N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~ 160 (275)
|++||+.|+++|.++||+|.+|.|++++.++|+|+|++||++++++|+.......+...++.+++++++++.++++.+++
T Consensus 184 N~~ia~~i~~~t~~~r~~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (328)
T cd00286 184 NELLATALSSLTTPLRFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDP 263 (328)
T ss_pred HHHHHhhccccccccccCccccchHHHHhhhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCC
Confidence 99999999999999999999999999999999999999999999999987665566788999999999999999999999
Q ss_pred CCcchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeecccccccccccCcceeeeee
Q 047757 161 RHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC 229 (275)
Q Consensus 161 ~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~ 229 (275)
+.|+++++++++||+.+.+++.+.+.+++.+.. .. +|+|+++++++|
T Consensus 264 ~~~~~~~~~~~~rG~~~~~~v~~~~~~l~~~~~--------------------~~--~w~~~~~~~~~~ 310 (328)
T cd00286 264 THGGYIAALLLVRGPVSPSEVREGIARVAPRTS--------------------HL--SWSPPGIKVGVS 310 (328)
T ss_pred CccchHHHHHHHhCCCChHHHHHHHHHHHHhCC--------------------cC--CcCCCCEeEeec
Confidence 999999999999999999999999999988765 44 999999999988
No 18
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.91 E-value=5.9e-25 Score=177.31 Aligned_cols=94 Identities=41% Similarity=0.869 Sum_probs=87.7
Q ss_pred CCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecCCCcchhhheeeccccCChhHHHHHHHHHhhhccCC
Q 047757 116 PRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSS 195 (275)
Q Consensus 116 P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~ 195 (275)
||+|||+++|+|+.......+++.++.+|++++|+++|+|++|||++|+|||++++|||+++++||++++.++|.+..
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~-- 78 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNS-- 78 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTST--
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccc--
Confidence 899999999999999888888999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccchhheeeecccccccccccCcceeeeee
Q 047757 196 ARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC 229 (275)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~ 229 (275)
++|++|+|+|||+|+|
T Consensus 79 ------------------~~Fv~W~p~~~kv~~~ 94 (126)
T PF03953_consen 79 ------------------IQFVDWIPTGFKVGIC 94 (126)
T ss_dssp ------------------TSB-SSSTTCEEEEEE
T ss_pred ------------------cceeeecCchhhcccc
Confidence 9999999999999999
No 19
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.72 E-value=2.4e-18 Score=148.24 Aligned_cols=93 Identities=37% Similarity=0.590 Sum_probs=87.4
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL 80 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~ 80 (275)
+|++|++.++ +||+.. .+++|+|. .+|.++++||+++++++|.+++|++++|||++|+++|.+++.+ .|. |.++
T Consensus 100 ~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~~~~-~~~-~~~~ 173 (192)
T smart00864 100 AAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVIDNDALLDICGRNLPI-RPA-FKDA 173 (192)
T ss_pred HHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEEhHHHHHHHhccCCc-hHH-HHHH
Confidence 4789999999 999887 99999994 5889999999999999999999999999999999999888876 688 9999
Q ss_pred hhhhHhhccCCcccccCCC
Q 047757 81 NHLISGTMSGVTCCLRFPG 99 (275)
Q Consensus 81 N~lIA~~ls~~t~~~RF~g 99 (275)
|++||+.|+++|.++||||
T Consensus 174 N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 174 NDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999997
No 20
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.61 E-value=1.9e-15 Score=138.88 Aligned_cols=171 Identities=15% Similarity=0.186 Sum_probs=126.6
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL 80 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~ 80 (275)
+++.|++.+++.|+ .+++|+|.|...+.++++||+++++++|.+++|++++|||++|+++|.+ +.++ +. |.++
T Consensus 102 ~ap~ia~~~ke~~~----~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~a-f~~~ 174 (303)
T cd02191 102 GAPVVAEHLKRIGT----LTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GA-FDHA 174 (303)
T ss_pred HHHHHHHHHHHhCC----CEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HH-HHHH
Confidence 36789999999986 6777888776678899999999999999999999999999999999986 7775 58 9999
Q ss_pred hhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecC
Q 047757 81 NHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADL 160 (275)
Q Consensus 81 N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~ 160 (275)
|++|++.++++|..+||||.+|.|+.++.+.|- -..+-++..+.+. ..-...+.+++.+... .+..++.
T Consensus 175 N~~ia~~i~~it~~i~~~g~invD~~dv~~~l~-~~G~a~ig~g~~~---------g~~~~~~a~~~Al~~p-ll~~~~~ 243 (303)
T cd02191 175 DEVLVRAVGGLFGAIEIEGEINVDFADVKNVMD-GGGVAMVGYGSED---------VTNRATEAVRKAALGP-LLLPCEI 243 (303)
T ss_pred HHHHHHHHHHHHHhhccCCcccCCHHHHHHHhc-cCCeEEEEEEEec---------CchHHHHHHHHHHhCC-CCCCCCc
Confidence 999999999999999999999999999987663 3333222222111 1123455555555422 1222444
Q ss_pred CCcchhhheeeccc--cCChhHHHHHHHHHhhh
Q 047757 161 RHGRYLTASTMFRG--KMSAKEVDEQMINVQNK 191 (275)
Q Consensus 161 ~~g~~la~~~~~RG--~~~~~~v~~~~~~l~~~ 191 (275)
+..+-+ .+.+.| ++..+++++..+.++.+
T Consensus 244 ~~A~~~--Lv~i~g~~~l~~~e~~~~~~~i~~~ 274 (303)
T cd02191 244 EGAEGA--LLVMAGPPDLNLKEIERVRKWLEEQ 274 (303)
T ss_pred ccCCEE--EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 433322 223345 58888999999988775
No 21
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.57 E-value=1.4e-15 Score=142.39 Aligned_cols=115 Identities=20% Similarity=0.226 Sum_probs=102.4
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL 80 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~ 80 (275)
+|+.|++.+++.|| +.+.+++++|+.. +.++++||+++++++|.+++|++++|||++|+++|.. + .+. |.++
T Consensus 115 ~~p~iae~lke~~~-~~~~~iv~~P~~~--eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~-~---~~~-f~~~ 186 (349)
T cd02202 115 GAPVLAKELKERYE-EPVYALGVLPARE--EGERYSANAARSLDALSEEADAIILFDNDAWKRKGES-V---EEA-YDRI 186 (349)
T ss_pred HHHHHHHHHHHhCC-ccEEEEEEecCCC--CCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc-h---HHH-HHHH
Confidence 36789999999999 8899999999973 4599999999999999999999999999999998743 2 378 9999
Q ss_pred hhhhHhhccCCcccccC-----CCCccccHHHHhhhcCCCCCccccccccc
Q 047757 81 NHLISGTMSGVTCCLRF-----PGQLNSDLRKLVVNLIPFPRLHFAMVGFA 126 (275)
Q Consensus 81 N~lIA~~ls~~t~~~RF-----~g~ln~dl~~l~~nLvP~P~l~fl~~s~~ 126 (275)
|++||+.+++++.+.|| +|.+|.|+.++.++|.+. ++.+.+++
T Consensus 187 N~~Ia~~i~~l~~~~r~~~~~~~g~invD~~dv~~~L~~~---G~~~iG~g 234 (349)
T cd02202 187 NEEIARRIGLLLRAGEANAGDSVGESVLDASEVINTLSGG---GFATIGYA 234 (349)
T ss_pred HHHHHHHHHHHHHhhhcccCCCCCeEeccHHHHHHHhccC---CeEEEEEE
Confidence 99999999999999999 999999999999999764 66666664
No 22
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=99.51 E-value=6.5e-15 Score=129.13 Aligned_cols=75 Identities=41% Similarity=0.768 Sum_probs=70.2
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCccc
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIG 78 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~ 78 (275)
+|++|++.||++||++.+.+++|+|+. . ++++++||++|+|++|.+++|++++|||++|+++|.+++++++|+ |.
T Consensus 141 ~~~~l~~~l~~~y~~~~~~~~~ilP~~-~-e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~-f~ 215 (216)
T PF00091_consen 141 LGPVLAEMLREEYPKKPIISFSILPFS-S-EGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPA-FN 215 (216)
T ss_dssp HHHHHHHHHHHTSTTSEEEEEEEE-CG-G-GSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHH-HH
T ss_pred cccccchhhhccccccceeeccccccc-c-ccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCC-cC
Confidence 478999999999999999999999994 4 999999999999999999999999999999999999999999888 75
No 23
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.41 E-value=1.6e-13 Score=128.32 Aligned_cols=172 Identities=16% Similarity=0.183 Sum_probs=118.5
Q ss_pred HHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccchhhh
Q 047757 4 LLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDLNHL 83 (275)
Q Consensus 4 ~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~N~l 83 (275)
.++.++..+|+ +.+++|+|.|...+.+++|||+.++++.|.+++|+++++||++|+++|.+ +.+. .. |..+|++
T Consensus 121 pvia~~ake~~---~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~-~a-f~~~N~i 194 (349)
T TIGR00065 121 PVVAKIAKELG---ALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLN-DA-FKVADDV 194 (349)
T ss_pred HHHHHHHHHcC---CCEEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHH-HH-HHHHHHH
Confidence 35666666776 45666666654578899999999999999999999999999999999977 7775 47 9999999
Q ss_pred hHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCccee-ecCCC
Q 047757 84 ISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCA-ADLRH 162 (275)
Q Consensus 84 IA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~-~~~~~ 162 (275)
|++.++++|..+||||.+|.|+.++.+-|- -...-++..+.+.- ........+-+++.+... ++. .+.+.
T Consensus 195 ia~~i~~it~~ir~~g~iNvDf~dv~~vl~-~~G~a~iG~g~~~g------~~~~~r~~~A~~~al~~p--Ll~~~~i~~ 265 (349)
T TIGR00065 195 LVRAVKGISELITKPGLINIDFADVRAVMS-GGGVAMMGIGEALG------EDTANRAFEAVRKALSSP--LLDVDKISG 265 (349)
T ss_pred HHHHHHhHHHhhccCCcCcCCHHHHHHHHh-cCCeEEEEEEEecC------CcchHHHHHHHHHHHhCC--CcCCccccc
Confidence 999999999999999999999999876553 23333332222211 000012444444444322 222 22333
Q ss_pred cchhhheeeccc--cCChhHHHHHHHHHhhhc
Q 047757 163 GRYLTASTMFRG--KMSAKEVDEQMINVQNKN 192 (275)
Q Consensus 163 g~~la~~~~~RG--~~~~~~v~~~~~~l~~~~ 192 (275)
.+-+- +.+.| ++...++++.+..++.+-
T Consensus 266 A~~~L--v~i~~~~~l~l~ev~~~~~~i~~~~ 295 (349)
T TIGR00065 266 AKGAL--VHITGGADLTLLEAEEIQEIITSEL 295 (349)
T ss_pred ccEEE--EEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 23221 22334 588889999999887753
No 24
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=99.38 E-value=3.4e-12 Score=123.93 Aligned_cols=168 Identities=16% Similarity=0.143 Sum_probs=111.8
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCCC----CccccccccchhhhhhhhcCCCeeEEeccHHHH-HHH-----HhhcC
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPKV----SDIVVEPYNATLSVHQLVENADECMVLNNEALY-DIC-----LRTLK 70 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~----~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~-~ic-----~~~l~ 70 (275)
||++++|+|+|+|||+.+..++|+|.+.. .++++++||++|++++|.+++|+++++.-.... .-. ...+.
T Consensus 167 ~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w~~~~~p~~~~~l~ 246 (493)
T cd06060 167 VGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLWRKPGPPRTFPYLN 246 (493)
T ss_pred hHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccccCCCCCCCCcccc
Confidence 68999999999999999999999997632 268999999999999999999999999633211 000 01122
Q ss_pred CCCCCcccchhhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCccccccccc-ccccCCCccccccCHHHHHHHhc
Q 047757 71 LTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFA-PLTSRGSQQYQSLSVPEITHQMW 149 (275)
Q Consensus 71 i~~p~~~~~~N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~-P~~~~~~~~~~~~t~~~l~~~~~ 149 (275)
++..+ --+--.++|-.|-++|.+.|..+.. .+|.++..+|.+.- -|+...+.+ |+-... .-+..++..++-
T Consensus 247 ~d~~~-~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~g-Rki~~~~~a~P~p~~~-----~~~l~d~L~~~~ 318 (493)
T cd06060 247 YDAEL-PYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSG-RKVVAAGLALPFPMVG-----GQDLIDFLDQSD 318 (493)
T ss_pred cCCCC-chHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhcc-chhhhhccCCCCCCCC-----CCcHHHHHHhcC
Confidence 22223 4455688999999999999987654 56888888888644 466655443 443321 224455555442
Q ss_pred ccCC-cceeec-CCCcchhhheeeccccC
Q 047757 150 DDRN-MMCAAD-LRHGRYLTASTMFRGKM 176 (275)
Q Consensus 150 ~~~~-~~~~~~-~~~g~~la~~~~~RG~~ 176 (275)
...- ..+.++ +...++.+..++.||-.
T Consensus 319 ~~~~~~~l~p~~~~~~~~~~qsv~~rG~~ 347 (493)
T cd06060 319 GAVPWLQLTPGCQIGTRCVIQSVVLRGIP 347 (493)
T ss_pred CCCCccccCCCCccCceeeeeeehhcCCC
Confidence 2111 112232 22357778888899953
No 25
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.38 E-value=3.3e-13 Score=124.22 Aligned_cols=171 Identities=18% Similarity=0.256 Sum_probs=118.2
Q ss_pred HHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccchhhhh
Q 047757 5 LISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDLNHLI 84 (275)
Q Consensus 5 lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~N~lI 84 (275)
++..+..+|++ .+++|+|.|...+..+++||+.++++.|.+++|+++++||++|+++|.+.+.+.. . |..+|++|
T Consensus 105 ~ia~~a~e~g~---~~~~vvt~Pf~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-a-f~~~n~~i 179 (304)
T cd02201 105 VIAKIAKEMGA---LTVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-A-FKLADDVL 179 (304)
T ss_pred HHHHHHHHcCC---CEEEEEeCCccccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-H-HHHHHHHH
Confidence 34556667774 4556655554577889999999999999999999999999999999988777765 6 99999999
Q ss_pred HhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecCCCcc
Q 047757 85 SGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGR 164 (275)
Q Consensus 85 A~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~g~ 164 (275)
++.++++|..+||+|.+|.|+.++.+.|-. ...-++..+.+. . .-...+.+++.+... .+..++.+..+
T Consensus 180 a~~i~~it~~~~~~g~invD~~dv~~vl~~-~G~a~ig~g~~~----g-----~~r~~~Av~~Al~~p-Ll~~~~i~~A~ 248 (304)
T cd02201 180 AQAVKGISDLITKPGLINLDFADVKTVMKN-KGVALMGIGEAS----G-----ENRAIEAAEKAISSP-LLEDDSISGAK 248 (304)
T ss_pred HHHHHHHHHHhccCccccCCHHHHHHHhcc-CCeEEEEEEEec----C-----chHHHHHHHHHHhCc-CcCCCChhccc
Confidence 999999999999999999999999887753 222222121111 0 112444454444332 11122233323
Q ss_pred hhhheeeccc--cCChhHHHHHHHHHhhhcc
Q 047757 165 YLTASTMFRG--KMSAKEVDEQMINVQNKNS 193 (275)
Q Consensus 165 ~la~~~~~RG--~~~~~~v~~~~~~l~~~~~ 193 (275)
.+- +.+.| ++...++++.+..++.+-.
T Consensus 249 ~~L--v~I~~~~~l~l~e~~~~~~~i~~~~~ 277 (304)
T cd02201 249 GVL--VNITGGSDLTLEEVNEAAEIIKEKVD 277 (304)
T ss_pred EEE--EEEEcCCCCCHHHHHHHHHHHHHHhC
Confidence 222 22334 5788899999888876643
No 26
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.20 E-value=3.9e-11 Score=113.10 Aligned_cols=171 Identities=18% Similarity=0.195 Sum_probs=120.8
Q ss_pred hhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccchh
Q 047757 2 GTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDLN 81 (275)
Q Consensus 2 GS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~N 81 (275)
+..|++.+++ ++ .....+.+.|+. .+.....+|+.++++.|.+++|++++|||++|+++| ..+.+. .. |..+|
T Consensus 131 apvIa~iake-~g-~ltv~vVt~Pf~--~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~-~a-f~~~N 203 (378)
T PRK13018 131 APVVAEIAKE-QG-ALVVGVVTKPFK--FEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIA-DA-FSVAD 203 (378)
T ss_pred HHHHHHHHHH-cC-CCeEEEEEcCcc--cccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHH-HH-HHHHH
Confidence 5667778876 55 334566677775 455677888999999999999999999999999999 777776 46 99999
Q ss_pred hhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecCC
Q 047757 82 HLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLR 161 (275)
Q Consensus 82 ~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~ 161 (275)
++|++.++++|.++||||.+|.|+.++.+-|- ...+-++..+.+. ..-...+.+++.+... ++.++.+
T Consensus 204 ~iIa~~I~~It~~i~~~G~iN~Df~dv~~vl~-~~G~a~iG~G~a~---------g~~r~~~Av~~Al~sp--LL~~di~ 271 (378)
T PRK13018 204 EVIAETVKGITETITKPSLINLDFADVKSVMK-GGGVAMMGVGEAK---------GQNRAMEAVRAALANP--LLDVDYR 271 (378)
T ss_pred HHHHHHHHhhhhhcccCCceecCHHHHHHHhc-cCCEEEEEEEEec---------CCcHHHHHHHHHHhCC--CcCCChh
Confidence 99999999999999999999999999877553 2222222222111 1123455566655443 3345554
Q ss_pred Ccchhhheeeccc--cCChhHHHHHHHHHhhhcc
Q 047757 162 HGRYLTASTMFRG--KMSAKEVDEQMINVQNKNS 193 (275)
Q Consensus 162 ~g~~la~~~~~RG--~~~~~~v~~~~~~l~~~~~ 193 (275)
..+-+ .+.+.| ++...++++....++.+-.
T Consensus 272 ~A~~~--Lv~I~g~~~l~l~ev~~~~~~i~~~~~ 303 (378)
T PRK13018 272 GAKGA--LVHITGGPDLTLKEANEAASRITEELD 303 (378)
T ss_pred hhceE--EEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 43322 233445 5888899999998877643
No 27
>PRK09330 cell division protein FtsZ; Validated
Probab=98.97 E-value=2.9e-10 Score=107.38 Aligned_cols=172 Identities=17% Similarity=0.227 Sum_probs=120.9
Q ss_pred HHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccchhhh
Q 047757 4 LLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDLNHL 83 (275)
Q Consensus 4 ~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~N~l 83 (275)
-++..+..+|+ +++++|+|.|...+..+.+||+.++++.|.+++|++++++|++|.++|.+.+.+.. . |..+|++
T Consensus 117 pvIA~iake~g---~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~-A-f~~ad~v 191 (384)
T PRK09330 117 PVVAEIAKELG---ILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLD-A-FKAADDV 191 (384)
T ss_pred HHHHHHHHHcC---CcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHH-H-HHHHHHH
Confidence 36778888887 66888888776688999999999999999999999999999999999977676654 6 9999999
Q ss_pred hHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecCCCc
Q 047757 84 ISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHG 163 (275)
Q Consensus 84 IA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~g 163 (275)
|++.+.+++..+++||.+|.|+.++-+-|- --..-++..+.+. ..-...+-+++.+... .+-.++.+..
T Consensus 192 L~~~v~~It~~i~~pG~iNvDfaDvk~vm~-~~G~a~~G~G~a~---------g~~ra~~A~~~Ai~sp-Ll~~~~i~~A 260 (384)
T PRK09330 192 LRQAVQGITDLITKPGLINLDFADVKTVMS-EMGLAMMGIGEAS---------GEDRAREAAEKAISSP-LLEDVDISGA 260 (384)
T ss_pred HHHHHHHHHHHHhcCCcccCCHHHHHHHHh-cCCeEEEEEEEec---------CccHHHHHHHHHHhCc-CcCCCChhhc
Confidence 999999999999999999998877765443 1222222222221 1112344444444221 1112333332
Q ss_pred chhhheeeccc--cCChhHHHHHHHHHhhhcc
Q 047757 164 RYLTASTMFRG--KMSAKEVDEQMINVQNKNS 193 (275)
Q Consensus 164 ~~la~~~~~RG--~~~~~~v~~~~~~l~~~~~ 193 (275)
+-+-+ .+.| ++...++++.+..++.+-.
T Consensus 261 ~~vLv--~I~g~~~l~l~e~~~~~~~i~~~~~ 290 (384)
T PRK09330 261 KGVLV--NITGGPDLTLFEVEEAAEIIREAAD 290 (384)
T ss_pred ceEEE--EEECCCCCCHHHHHHHHHHHHHHhC
Confidence 32222 2333 5888999999998877643
No 28
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.58 E-value=4.6e-08 Score=76.79 Aligned_cols=94 Identities=24% Similarity=0.473 Sum_probs=74.4
Q ss_pred ccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHH--HhcccCCcceeecCCCcchhhheeeccccCCh
Q 047757 101 LNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITH--QMWDDRNMMCAADLRHGRYLTASTMFRGKMSA 178 (275)
Q Consensus 101 ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~--~~~~~~~~~~~~~~~~g~~la~~~~~RG~~~~ 178 (275)
+|.|++++.++|+|+| |++++++|.... .+..+..++.. .++++.+++..+++.. ||+++. ++..
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 4789999999999999 999999999762 35567778877 8899988887776653 787765 7899
Q ss_pred hHHHHHHHHHhhhccCCccccccchhheeeecccccccccccC-cceee
Q 047757 179 KEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIP-NNVKS 226 (275)
Q Consensus 179 ~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p-~~~~~ 226 (275)
+|+.+++.+++.+.. ...|+.|+| .++++
T Consensus 68 ~ev~~~~~~i~~~~~-------------------~~~~v~w~~~~~~~~ 97 (120)
T smart00865 68 KEVNEAMERIREKAD-------------------PDAFIIWGPVIDEEL 97 (120)
T ss_pred HHHHHHHHHHHHhcC-------------------CCceEEEccccCCcC
Confidence 999999999987632 046888998 55543
No 29
>PF14881 Tubulin_3: Tubulin domain
Probab=97.25 E-value=0.00026 Score=60.52 Aligned_cols=84 Identities=19% Similarity=0.335 Sum_probs=60.8
Q ss_pred ChhHHHHHHHhHcCCcee-ceeEEecCCCCC-c----cccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCC
Q 047757 1 MGTLLISKIREEYPERIM-LTFSVFRSPKVS-D----IVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTP 74 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~-~~~~V~Ps~~~~-~----~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p 74 (275)
+++.++|.|+|||||+.+ ..+.+.+..... . ....-.|.++++..|.++++..+++.. .. +..
T Consensus 90 fas~~Le~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~----------~~-d~~ 158 (180)
T PF14881_consen 90 FASSLLEHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLST----------LS-DAS 158 (180)
T ss_pred HHHHHHHHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCC----------CC-cCC
Confidence 478899999999999986 444433322111 1 123457999999999999999999972 00 123
Q ss_pred CcccchhhhhHhhccCCccccc
Q 047757 75 AVIGDLNHLISGTMSGVTCCLR 96 (275)
Q Consensus 75 ~~~~~~N~lIA~~ls~~t~~~R 96 (275)
+ .-+.-.++|.+|-++|.|.|
T Consensus 159 s-~~htSai~A~aidT~TLp~R 179 (180)
T PF14881_consen 159 S-NWHTSAILAAAIDTITLPYR 179 (180)
T ss_pred C-cHHHHHHHHHHHHhccccCC
Confidence 4 44777899999999999987
No 30
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=93.17 E-value=0.088 Score=50.53 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=69.7
Q ss_pred ChhHHHHHHHhHcCCceeceeEEecCCC-CCccc--cc----cccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCC
Q 047757 1 MGTLLISKIREEYPERIMLTFSVFRSPK-VSDIV--VE----PYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTT 73 (275)
Q Consensus 1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~-~~~~v--vq----pYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~ 73 (275)
++|..||.|+|||+++.+.+..+.|.+. .++.- +. --|.+|++++|.+.|+..+++-= ...++
T Consensus 220 ~as~~le~l~DEys~~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~-------~~~~~--- 289 (483)
T KOG2530|consen 220 FASKLLEELQDEYSKKAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLST-------ASGLG--- 289 (483)
T ss_pred HHHHHHHHHHHhhcCCceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeecccc-------ccccc---
Confidence 5789999999999999999999998652 22222 22 35788999999999998888721 11111
Q ss_pred CCcccchhhhhHhhccCCcccccCCCCccccHHHHhhhc
Q 047757 74 PAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNL 112 (275)
Q Consensus 74 p~~~~~~N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nL 112 (275)
. .-..-.++|..+-++|.|.|--++.+..+.++++-|
T Consensus 290 -~-~~~tsA~~a~~~ds~tlptr~~ssS~~~~~d~ls~l 326 (483)
T KOG2530|consen 290 -D-LWETSAKLARAFDSITLPTRLISSSNLRQRDTLSYL 326 (483)
T ss_pred -c-HHHHHHHHHhhcccccccceecchhHHHHHHHHHHH
Confidence 1 223345677888888988888777665555555433
No 31
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=91.33 E-value=0.13 Score=48.11 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=77.9
Q ss_pred HHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccchhhhh
Q 047757 5 LISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDLNHLI 84 (275)
Q Consensus 5 lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~N~lI 84 (275)
|.+.+++ .........++|+. .+--.-.-|+.-.+..|.+++|.+++++|+.|.++.. ...+. -. |...|.++
T Consensus 117 vakiake--~g~ltvavvt~Pf~--~EG~~r~~~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~~-~A-f~~ad~vl 189 (338)
T COG0206 117 VAEIAKE--LGALTVAVVTLPFS--FEGSPRMENAEEGIEELREVVDTLIVIPNDKLLKGKD-KTPIA-EA-FNEADDVL 189 (338)
T ss_pred HHHHHHh--cCCcEEEEEEecch--hcCchHHHHHHHHHHHHHHhCCcEEEEecHHHHhccC-cccHH-HH-HHHHHHHH
Confidence 3444444 45566778889986 3334556699999999999999999999999988763 22111 24 77889999
Q ss_pred HhhccCCcccccCCCCccccHHHHhhhcCC
Q 047757 85 SGTMSGVTCCLRFPGQLNSDLRKLVVNLIP 114 (275)
Q Consensus 85 A~~ls~~t~~~RF~g~ln~dl~~l~~nLvP 114 (275)
++.+.+++--+--||..|.|+.++-+-+-.
T Consensus 190 ~~~v~~i~e~I~~~glinvDfaDv~~vm~~ 219 (338)
T COG0206 190 GNAVKGITELITKPGLVNVDFADVRTVMKG 219 (338)
T ss_pred HHHHHHHHHHhccCceEeecHHHHHHHHhc
Confidence 999999998888889999998887765543
No 32
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=39.88 E-value=12 Score=17.08 Aligned_cols=9 Identities=67% Similarity=1.335 Sum_probs=6.3
Q ss_pred hhcCCCCCc
Q 047757 110 VNLIPFPRL 118 (275)
Q Consensus 110 ~nLvP~P~l 118 (275)
+-|+||||.
T Consensus 3 sGlI~fpR~ 11 (11)
T PF08259_consen 3 SGLIPFPRV 11 (11)
T ss_pred ccccccCCC
Confidence 357888873
No 33
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=32.73 E-value=38 Score=19.05 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 047757 234 EMEFTEAESNMNDLVAEY 251 (275)
Q Consensus 234 e~eF~ea~e~l~~li~eY 251 (275)
.+++.+|.+.++.++++|
T Consensus 13 ~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 13 LGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HCHHHHHHHHHHHHHHHS
T ss_pred ccCHHHHHHHHHHHHHHC
Confidence 568999999999999776
No 34
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=24.16 E-value=47 Score=34.59 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=9.5
Q ss_pred CChhHHHHHHHHHhhhc
Q 047757 176 MSAKEVDEQMINVQNKN 192 (275)
Q Consensus 176 ~~~~~v~~~~~~l~~~~ 192 (275)
.+.+.+.++++.++.++
T Consensus 763 ~~d~~~sRqIKS~ki~N 779 (911)
T PF05086_consen 763 ISDRSISRQIKSIKIKN 779 (911)
T ss_pred hcchhhhhhcceEEEec
Confidence 34455666666665553
No 35
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=23.83 E-value=26 Score=25.60 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=35.8
Q ss_pred ccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccchhhhhHhhcc
Q 047757 31 DIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDLNHLISGTMS 89 (275)
Q Consensus 31 ~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~N~lIA~~ls 89 (275)
|+.+|-||----=.-|++.-| +|..|.+-+...++-.... ..+|.+|+++++
T Consensus 23 D~fI~lYNeSe~DepLiql~d-----etael~~~A~~~yG~e~~n--~klN~iIkqiLs 74 (84)
T PF11458_consen 23 DTFIQLYNESEKDEPLIQLED-----ETAELIRQAREKYGQEKLN--EKLNAIIKQILS 74 (84)
T ss_pred HHHHHHHcccccccchhhcch-----hHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHc
Confidence 567777776555555555544 5667776666667665555 789999999987
No 36
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=23.37 E-value=97 Score=26.38 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=25.9
Q ss_pred ccCcceeeeeecCCChhhHHHHHHHHHHHHHHHHHH
Q 047757 219 WIPNNVKSSVCEGMDEMEFTEAESNMNDLVAEYQQY 254 (275)
Q Consensus 219 w~p~~~~~~~~eGmee~eF~ea~e~l~~li~eY~~~ 254 (275)
|||.|-+.+ |-.|.+-...-++.++.+|++-
T Consensus 93 wc~~gkkrS-----DItELDVvL~~FEk~~~eYkq~ 123 (175)
T PF13097_consen 93 WCPEGKKRS-----DITELDVVLSAFEKTALEYKQS 123 (175)
T ss_pred ccCCCCccc-----cchHHHHHHHHHHHHHHHHHHh
Confidence 999888743 7778888999999999999874
Done!