Query 047759
Match_columns 102
No_of_seqs 102 out of 332
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 02:51:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04398 DUF538: Protein of un 100.0 5.5E-37 1.2E-41 213.3 5.6 80 20-102 1-80 (110)
2 PRK12442 translation initiatio 59.9 29 0.00064 23.5 4.8 39 48-97 18-56 (87)
3 cd02410 archeal_CPSF_KH The ar 58.5 12 0.00027 27.4 3.0 38 19-62 52-90 (145)
4 PRK09457 astD succinylglutamic 56.7 11 0.00024 31.5 2.8 31 7-37 163-196 (487)
5 smart00540 LEM in nuclear memb 53.7 11 0.00025 22.2 1.8 18 17-34 7-24 (44)
6 TIGR02288 PaaN_2 phenylacetic 52.7 11 0.00024 32.6 2.3 31 7-37 222-259 (551)
7 cd07104 ALDH_BenzADH-like ALDH 51.2 16 0.00035 29.5 3.0 31 7-37 127-161 (431)
8 cd07147 ALDH_F21_RNP123 Aldehy 48.0 20 0.00044 29.3 3.1 31 7-37 152-185 (452)
9 cd07127 ALDH_PAD-PaaZ Phenylac 47.5 18 0.00038 31.3 2.7 31 7-37 222-259 (549)
10 TIGR02299 HpaE 5-carboxymethyl 47.4 17 0.00038 30.1 2.6 31 7-37 164-197 (488)
11 cd07113 ALDH_PADH_NahF Escheri 46.3 22 0.00048 29.5 3.1 31 7-37 171-204 (477)
12 cd07098 ALDH_F15-22 Aldehyde d 45.8 22 0.00048 29.2 3.0 31 7-37 149-186 (465)
13 cd07102 ALDH_EDX86601 Uncharac 45.8 23 0.0005 28.9 3.1 31 7-37 145-178 (452)
14 cd07110 ALDH_F10_BADH Arabidop 45.7 22 0.00049 29.1 3.0 31 7-37 149-182 (456)
15 PRK13968 putative succinate se 45.0 24 0.00051 29.3 3.0 31 7-37 155-188 (462)
16 PLN02315 aldehyde dehydrogenas 44.8 22 0.00049 30.1 2.9 32 6-37 182-220 (508)
17 PF10262 Rdx: Rdx family; Int 44.7 50 0.0011 20.7 3.9 15 48-64 41-55 (76)
18 TIGR02518 EutH_ACDH acetaldehy 44.3 23 0.0005 29.9 2.9 32 6-37 132-170 (488)
19 PRK09406 gabD1 succinic semial 44.1 24 0.00052 29.2 3.0 31 7-37 152-185 (457)
20 cd07093 ALDH_F8_HMSADH Human a 43.7 25 0.00055 28.7 3.0 31 7-37 146-179 (455)
21 cd07131 ALDH_AldH-CAJ73105 Unc 43.4 25 0.00054 29.0 2.9 31 7-37 164-197 (478)
22 TIGR00008 infA translation ini 43.4 73 0.0016 20.4 4.5 39 48-97 16-54 (68)
23 cd07151 ALDH_HBenzADH NADP+-de 42.9 26 0.00057 28.9 3.0 32 6-37 158-193 (465)
24 COG1254 AcyP Acylphosphatases 42.7 35 0.00075 22.9 3.1 20 39-58 31-50 (92)
25 cd07090 ALDH_F9_TMBADH NAD+-de 42.6 23 0.00049 29.1 2.6 30 7-36 145-177 (457)
26 PRK10090 aldehyde dehydrogenas 42.6 27 0.00059 28.6 3.0 31 7-37 100-133 (409)
27 cd07150 ALDH_VaniDH_like Pseud 42.6 26 0.00057 28.5 2.9 31 7-37 148-181 (451)
28 PRK09407 gabD2 succinic semial 41.8 27 0.00059 29.5 3.0 31 7-37 183-216 (524)
29 cd07109 ALDH_AAS00426 Uncharac 41.6 29 0.00063 28.4 3.1 31 7-37 146-179 (454)
30 PRK00197 proA gamma-glutamyl p 41.0 22 0.00049 29.1 2.3 31 7-37 142-179 (417)
31 PF02402 Lysis_col: Lysis prot 40.1 15 0.00032 22.2 0.8 18 78-95 29-46 (46)
32 cd07152 ALDH_BenzADH NAD-depen 39.7 30 0.00066 28.2 2.9 31 7-37 139-173 (443)
33 cd07119 ALDH_BADH-GbsA Bacillu 39.7 31 0.00068 28.5 3.0 32 6-37 162-196 (482)
34 PF03975 CheD: CheD chemotacti 39.6 45 0.00097 22.7 3.3 37 18-58 66-108 (114)
35 cd07105 ALDH_SaliADH Salicylal 39.4 32 0.00069 28.1 2.9 31 7-37 127-160 (432)
36 cd07088 ALDH_LactADH-AldA Esch 39.4 33 0.0007 28.2 3.0 31 7-37 162-195 (468)
37 cd07115 ALDH_HMSADH_HapE Pseud 38.6 30 0.00064 28.4 2.7 31 7-37 146-179 (453)
38 TIGR03216 OH_muco_semi_DH 2-hy 38.5 34 0.00074 28.4 3.0 31 7-37 168-201 (481)
39 cd07091 ALDH_F1-2_Ald2-like AL 38.2 33 0.00072 28.3 2.9 31 7-37 170-203 (476)
40 cd07111 ALDH_F16 Aldehyde dehy 37.9 32 0.0007 28.8 2.8 31 7-37 176-209 (480)
41 cd07144 ALDH_ALD2-YMR170C Sacc 37.9 34 0.00074 28.4 3.0 31 7-37 173-206 (484)
42 COG2221 DsrA Dissimilatory sul 37.6 28 0.0006 28.6 2.3 32 4-35 66-97 (317)
43 cd07130 ALDH_F7_AASADH NAD+-de 37.1 36 0.00077 28.3 3.0 32 6-37 160-198 (474)
44 KOG2455 Delta-1-pyrroline-5-ca 37.1 21 0.00046 31.2 1.6 16 20-35 241-256 (561)
45 cd07146 ALDH_PhpJ Streptomyces 36.9 38 0.00083 27.9 3.1 31 7-37 149-182 (451)
46 cd07118 ALDH_SNDH Gluconobacte 36.9 38 0.00082 27.9 3.0 31 7-37 148-181 (454)
47 cd07141 ALDH_F1AB_F2_RALDH1 NA 36.8 37 0.00079 28.2 3.0 32 6-37 173-207 (481)
48 PF09351 DUF1993: Domain of un 36.6 22 0.00047 26.1 1.4 15 19-33 142-156 (162)
49 TIGR01780 SSADH succinate-semi 36.6 37 0.0008 27.9 2.9 31 7-37 146-179 (448)
50 cd07103 ALDH_F5_SSADH_GabD Mit 36.3 36 0.00079 27.7 2.8 31 7-37 146-179 (451)
51 cd03694 GTPBP_II Domain II of 36.1 69 0.0015 20.4 3.7 15 74-88 15-29 (87)
52 TIGR01722 MMSDH methylmalonic 36.1 37 0.0008 28.2 2.9 31 7-37 165-198 (477)
53 cd07142 ALDH_F2BC Arabidosis a 36.0 37 0.0008 28.2 2.9 32 6-37 169-203 (476)
54 cd07140 ALDH_F1L_FTFDH 10-form 36.0 38 0.00083 28.4 3.0 31 7-37 176-209 (486)
55 TIGR03250 PhnAcAld_DH putative 35.7 40 0.00086 28.0 3.0 31 7-37 168-201 (472)
56 cd07085 ALDH_F6_MMSDH Methylma 35.4 39 0.00085 28.0 2.9 31 7-37 165-198 (478)
57 TIGR03240 arg_catab_astD succi 35.3 38 0.00082 28.2 2.8 31 7-37 161-194 (484)
58 cd07101 ALDH_SSADH2_GabD2 Myco 35.3 41 0.0009 27.6 3.0 31 7-37 147-180 (454)
59 cd07125 ALDH_PutA-P5CDH Delta( 34.4 42 0.00092 28.3 3.0 31 7-37 196-229 (518)
60 cd07081 ALDH_F20_ACDH_EutE-lik 34.3 39 0.00084 28.2 2.7 31 7-37 124-161 (439)
61 cd01256 PH_dynamin Dynamin ple 34.0 23 0.00051 24.9 1.2 20 30-51 41-60 (110)
62 cd07143 ALDH_AldA_AN0554 Asper 33.9 42 0.00091 28.0 2.9 31 7-37 173-206 (481)
63 cd07112 ALDH_GABALDH-PuuC Esch 33.7 41 0.00088 27.8 2.7 31 7-37 153-186 (462)
64 PLN00412 NADP-dependent glycer 33.6 43 0.00092 28.1 2.9 31 7-37 187-220 (496)
65 cd07114 ALDH_DhaS Uncharacteri 33.3 45 0.00098 27.3 3.0 30 7-36 148-180 (457)
66 PF07494 Reg_prop: Two compone 33.3 64 0.0014 16.1 2.5 20 35-55 2-21 (24)
67 cd07145 ALDH_LactADH_F420-Bios 33.3 46 0.001 27.3 3.0 31 7-37 152-185 (456)
68 cd07100 ALDH_SSADH1_GabD1 Myco 33.0 48 0.001 27.0 3.1 31 7-37 125-158 (429)
69 PF09383 NIL: NIL domain; Int 33.0 18 0.0004 22.4 0.5 47 10-58 8-54 (76)
70 cd07123 ALDH_F4-17_P5CDH Delta 32.6 49 0.0011 28.0 3.1 55 6-64 197-254 (522)
71 PRK11241 gabD succinate-semial 32.3 49 0.0011 27.8 3.0 31 7-37 175-208 (482)
72 COG4669 EscJ Type III secretor 32.3 45 0.00098 26.5 2.7 25 7-32 56-80 (246)
73 cd07083 ALDH_P5CDH ALDH subfam 32.3 48 0.001 27.8 3.0 31 7-37 183-216 (500)
74 cd07097 ALDH_KGSADH-YcbD Bacil 32.0 48 0.001 27.4 2.9 30 7-36 164-196 (473)
75 PF13619 KTSC: KTSC domain 31.9 1.2E+02 0.0025 18.3 4.0 21 38-58 4-24 (60)
76 cd07148 ALDH_RL0313 Uncharacte 31.9 44 0.00095 27.5 2.7 31 7-37 153-186 (455)
77 PRK13488 chemoreceptor glutami 31.4 86 0.0019 22.9 3.9 38 17-58 108-151 (157)
78 PRK09847 gamma-glutamyl-gamma- 31.3 49 0.0011 27.8 2.9 31 7-37 186-219 (494)
79 PLN02466 aldehyde dehydrogenas 31.1 47 0.001 28.4 2.8 31 7-37 224-257 (538)
80 cd07122 ALDH_F20_ACDH Coenzyme 31.0 46 0.001 27.8 2.7 32 6-37 123-161 (436)
81 cd07095 ALDH_SGSD_AstD N-succi 30.9 42 0.00091 27.6 2.4 53 7-64 126-181 (431)
82 cd07138 ALDH_CddD_SSP0762 Rhod 30.8 54 0.0012 27.0 3.0 31 7-37 159-192 (466)
83 PF06977 SdiA-regulated: SdiA- 30.7 1.9E+02 0.0041 22.5 5.9 51 38-94 22-72 (248)
84 TIGR01236 D1pyr5carbox1 delta- 30.6 49 0.0011 28.2 2.8 31 7-37 198-231 (533)
85 COG2706 3-carboxymuconate cycl 30.5 1.3E+02 0.0027 25.2 5.1 34 38-71 64-103 (346)
86 PLN02766 coniferyl-aldehyde de 30.5 54 0.0012 27.6 3.0 31 7-37 187-220 (501)
87 PRK03137 1-pyrroline-5-carboxy 30.4 53 0.0012 27.7 3.0 31 7-37 200-233 (514)
88 PF08300 HCV_NS5a_1a: Hepatiti 30.4 51 0.0011 21.1 2.2 17 74-91 27-43 (62)
89 cd07149 ALDH_y4uC Uncharacteri 30.2 50 0.0011 26.8 2.7 31 7-37 152-185 (453)
90 PF01491 Frataxin_Cyay: Fratax 29.1 72 0.0016 21.7 3.0 40 43-82 32-73 (109)
91 cd05475 nucellin_like Nucellin 28.9 91 0.002 23.5 3.8 39 43-86 16-61 (273)
92 PF09949 DUF2183: Uncharacteri 28.8 45 0.00097 22.6 1.9 22 19-40 14-35 (100)
93 cd04911 ACT_AKiii-YclM-BS_1 AC 28.3 66 0.0014 20.9 2.5 34 18-52 18-51 (76)
94 cd07121 ALDH_EutE Ethanolamine 28.1 61 0.0013 26.8 2.9 31 7-37 126-163 (429)
95 cd07089 ALDH_CddD-AldA-like Rh 28.0 66 0.0014 26.5 3.1 31 7-37 152-185 (459)
96 PLN02467 betaine aldehyde dehy 27.8 58 0.0013 27.5 2.8 31 7-37 180-213 (503)
97 PRK13252 betaine aldehyde dehy 27.1 62 0.0013 26.9 2.8 31 7-37 171-204 (488)
98 cd07124 ALDH_PutA-P5CDH-RocA D 27.1 64 0.0014 27.1 2.9 31 7-37 195-228 (512)
99 cd07139 ALDH_AldA-Rv0768 Mycob 27.1 70 0.0015 26.3 3.1 31 7-37 166-199 (471)
100 PRK13497 chemoreceptor glutami 26.7 1.3E+02 0.0029 22.5 4.3 38 17-58 113-156 (184)
101 PRK13493 chemoreceptor glutami 26.5 1.3E+02 0.0029 23.1 4.3 38 17-58 140-183 (213)
102 PLN02278 succinic semialdehyde 26.3 70 0.0015 26.9 3.0 31 7-37 189-222 (498)
103 TIGR01238 D1pyr5carbox3 delta- 26.2 70 0.0015 27.0 3.0 30 7-36 189-221 (500)
104 cd03696 selB_II selB_II: this 26.0 1.3E+02 0.0029 18.6 3.6 13 75-87 16-28 (83)
105 PF00403 HMA: Heavy-metal-asso 26.0 1.4E+02 0.003 17.2 4.2 34 16-58 11-44 (62)
106 PF14567 SUKH_5: SMI1-KNR4 cel 25.9 99 0.0022 22.1 3.3 34 18-58 71-104 (132)
107 PLN02542 fructose-1,6-bisphosp 25.4 1.2E+02 0.0025 25.8 4.1 20 38-57 259-278 (412)
108 PRK13498 chemoreceptor glutami 25.4 1.5E+02 0.0033 21.8 4.3 38 17-58 116-159 (167)
109 TIGR01804 BADH glycine betaine 25.2 71 0.0015 26.3 2.8 31 7-37 162-195 (467)
110 PF05891 Methyltransf_PK: AdoM 25.0 46 0.001 25.9 1.6 16 27-45 202-217 (218)
111 cd07086 ALDH_F7_AASADH-like NA 24.8 78 0.0017 26.3 3.0 31 7-37 162-199 (478)
112 TIGR03807 RR_fam_repeat putati 24.6 71 0.0015 17.1 1.8 16 68-83 9-24 (27)
113 cd07129 ALDH_KGSADH Alpha-Keto 24.2 71 0.0015 26.4 2.6 31 7-37 136-173 (454)
114 cd04089 eRF3_II eRF3_II: domai 24.1 63 0.0014 20.3 1.9 15 74-88 14-28 (82)
115 PF08710 nsp9: nsp9 replicase; 24.1 2.7E+02 0.0058 19.7 5.8 35 39-73 50-85 (111)
116 PRK14445 acylphosphatase; Prov 24.1 95 0.0021 20.3 2.8 20 39-58 31-50 (91)
117 TIGR01237 D1pyr5carbox2 delta- 23.9 81 0.0017 26.6 2.9 31 7-37 196-229 (511)
118 cd07126 ALDH_F12_P5CDH Delta(1 23.2 85 0.0019 26.6 3.0 31 7-37 171-204 (489)
119 PLN02419 methylmalonate-semial 23.2 72 0.0016 28.1 2.6 31 7-37 278-311 (604)
120 PRK13495 chemoreceptor glutami 23.1 1.7E+02 0.0036 21.5 4.1 38 17-58 106-149 (159)
121 PRK13490 chemoreceptor glutami 23.0 2E+02 0.0043 21.1 4.5 38 17-58 113-156 (162)
122 PF05963 Cytomega_US3: Cytomeg 22.5 1.4E+02 0.0031 22.9 3.8 60 28-93 15-75 (187)
123 PHA00455 hypothetical protein 22.5 1.5E+02 0.0033 19.9 3.5 45 44-88 4-55 (85)
124 PRK09293 fructose-1,6-bisphosp 22.4 1.4E+02 0.0029 24.3 3.9 20 38-57 170-189 (327)
125 KOG3591 Alpha crystallins [Pos 22.4 79 0.0017 23.4 2.3 34 22-58 115-148 (173)
126 cd03698 eRF3_II_like eRF3_II_l 22.1 70 0.0015 20.1 1.8 16 73-88 14-29 (83)
127 cd07092 ALDH_ABALDH-YdcW Esche 22.0 90 0.0019 25.4 2.8 29 7-36 147-178 (450)
128 PRK14429 acylphosphatase; Prov 21.9 1.2E+02 0.0026 19.8 2.9 20 39-58 29-48 (90)
129 PRK14430 acylphosphatase; Prov 21.5 1.1E+02 0.0024 20.1 2.7 20 39-58 31-50 (92)
130 PF00316 FBPase: Fructose-1-6- 21.5 95 0.0021 25.4 2.8 21 38-58 169-189 (324)
131 cd03368 Ribosomal_S12 S12-like 21.5 76 0.0017 22.3 1.9 17 81-97 80-96 (108)
132 PF11154 DUF2934: Protein of u 21.4 90 0.0019 17.7 2.0 16 18-33 9-24 (40)
133 cd03693 EF1_alpha_II EF1_alpha 21.2 84 0.0018 20.1 2.0 15 74-88 19-33 (91)
134 cd07079 ALDH_F18-19_ProA-GPR G 21.2 92 0.002 25.4 2.7 31 7-37 136-173 (406)
135 cd07099 ALDH_DDALDH Methylomon 21.0 1E+02 0.0022 25.2 2.9 31 7-37 148-181 (453)
136 TIGR00407 proA gamma-glutamyl 20.9 72 0.0016 26.2 2.0 31 7-37 130-167 (398)
137 PRK13491 chemoreceptor glutami 20.9 2E+02 0.0044 22.0 4.3 37 17-57 116-158 (199)
138 PF07085 DRTGG: DRTGG domain; 20.8 82 0.0018 20.5 1.9 28 5-32 61-88 (105)
139 PF11792 Baculo_LEF5_C: Baculo 20.6 41 0.00088 20.0 0.4 17 60-76 13-29 (43)
140 PRK14451 acylphosphatase; Prov 20.5 1.1E+02 0.0024 20.0 2.5 20 39-58 30-49 (89)
141 PLN02262 fructose-1,6-bisphosp 20.2 1.1E+02 0.0023 25.3 2.8 20 38-57 182-201 (340)
142 PF13761 DUF4166: Domain of un 20.1 3.2E+02 0.0069 19.6 5.1 42 28-76 119-160 (162)
No 1
>PF04398 DUF538: Protein of unknown function, DUF538; InterPro: IPR007493 This family consists of several plant proteins of unknown function.; PDB: 1YDU_A.
Probab=100.00 E-value=5.5e-37 Score=213.31 Aligned_cols=80 Identities=51% Similarity=0.912 Sum_probs=63.3
Q ss_pred hHHHHHHhCCCCCCCcCCCCceEEEEEccccEEEEEecCeEEEEEeecCeEEEEceEEEEEEecCceeccceeEEEEEee
Q 047759 20 LAVSLLKKFELPEGLLPLANVVEVGYVESTGYMWIVQQNKVEHEFKMISKLVSYDTEINGYVDKMKIKKLRGVKAKELML 99 (102)
Q Consensus 20 ~a~elL~~~gLP~GLLP~~~V~~y~l~~~tG~f~v~l~~~c~~~f~~~~~~v~Y~~~ItG~l~~g~i~~L~GVk~k~lf~ 99 (102)
||||+|++||||+||||+ +|++|+||++||+|||+|+++|+++|+. |+|+|+++|||+|++|+|++|+|||+|+||+
T Consensus 1 tayelL~~~glP~GLLP~-~v~~y~l~~~tG~f~v~l~~~C~~~~~~--~~v~Y~~~ItG~i~~g~i~~L~GVk~k~l~~ 77 (110)
T PF04398_consen 1 TAYELLEEYGLPRGLLPL-GVTEYGLNRDTGFFWVKLKSPCEFRFEG--YLVSYDSEITGYIEKGKIKNLTGVKVKELFL 77 (110)
T ss_dssp --HHHHHHHS-TT-TTTS-SS-EEEE-TTT-SEEEE-SS-EEEESTT--SEEEE-SEEEEEE-SS-EEEEES-EEE-SSS
T ss_pred CHHHhHHHcCCCCCcCCC-CceEEEEecCCcEEEEEecCCEEEEEEE--EEEEEcCeEEEEECCCcCccccCEEEEEEEE
Confidence 699999999999999995 9999999999999999999999999964 8999999999999999999999999999999
Q ss_pred cCC
Q 047759 100 WPP 102 (102)
Q Consensus 100 W~~ 102 (102)
|++
T Consensus 78 W~~ 80 (110)
T PF04398_consen 78 WVP 80 (110)
T ss_dssp EES
T ss_pred Eee
Confidence 986
No 2
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=59.88 E-value=29 Score=23.47 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=30.6
Q ss_pred cccEEEEEecCeEEEEEeecCeEEEEceEEEEEEecCceeccceeEEEEE
Q 047759 48 STGYMWIVQQNKVEHEFKMISKLVSYDTEINGYVDKMKIKKLRGVKAKEL 97 (102)
Q Consensus 48 ~tG~f~v~l~~~c~~~f~~~~~~v~Y~~~ItG~l~~g~i~~L~GVk~k~l 97 (102)
.++.|.|.|.. +..+- ..|+|++...+|+=+.|=+|++-
T Consensus 18 p~~~frV~Len---------G~~vl--a~isGKmR~~rIrIl~GD~V~VE 56 (87)
T PRK12442 18 PDSRFRVTLEN---------GVEVG--AYASGRMRKHRIRILAGDRVTLE 56 (87)
T ss_pred CCCEEEEEeCC---------CCEEE--EEeccceeeeeEEecCCCEEEEE
Confidence 36788888876 33333 67899999999999999888876
No 3
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=58.53 E-value=12 Score=27.43 Aligned_cols=38 Identities=13% Similarity=0.271 Sum_probs=28.6
Q ss_pred hhHHHHHHhCCCCCCCcCCC-CceEEEEEccccEEEEEecCeEEE
Q 047759 19 KLAVSLLKKFELPEGLLPLA-NVVEVGYVESTGYMWIVQQNKVEH 62 (102)
Q Consensus 19 ~~a~elL~~~gLP~GLLP~~-~V~~y~l~~~tG~f~v~l~~~c~~ 62 (102)
..|.++..+ ++|.+ +|++.-||.+||.+++...+|-.+
T Consensus 52 e~A~~~I~~------ivP~ea~i~di~Fd~~tGEV~IeaeKPG~V 90 (145)
T cd02410 52 EEAIKIILE------IVPEEAGITDIYFDDDTGEVIIEAEKPGLV 90 (145)
T ss_pred HHHHHHHHH------hCCCccCceeeEecCCCcEEEEEEcCCeEE
Confidence 456666665 45522 799999999999999999887544
No 4
>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed
Probab=56.66 E-value=11 Score=31.45 Aligned_cols=31 Identities=32% Similarity=0.329 Sum_probs=24.5
Q ss_pred ccEEEeccccchhhHH---HHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKLAV---SLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~a~---elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+..++. +++++.|||.|++=.
T Consensus 163 N~VvlKPs~~tp~t~~~l~~l~~~aGlP~gvv~~ 196 (487)
T PRK09457 163 NTVVFKPSELTPWVAELTVKLWQQAGLPAGVLNL 196 (487)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCcCcCeEEE
Confidence 5678888877665554 889999999999864
No 5
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=53.71 E-value=11 Score=22.24 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=14.6
Q ss_pred chhhHHHHHHhCCCCCCC
Q 047759 17 GLKLAVSLLKKFELPEGL 34 (102)
Q Consensus 17 ~~~~a~elL~~~gLP~GL 34 (102)
+.....+.|.+||+|.|=
T Consensus 7 Sd~eL~~~L~~~G~~~gP 24 (44)
T smart00540 7 SDAELRAELKQYGLPPGP 24 (44)
T ss_pred CHHHHHHHHHHcCCCCCC
Confidence 445678899999999983
No 6
>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN. This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate model, TIGR02278.
Probab=52.72 E-value=11 Score=32.60 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=24.3
Q ss_pred ccEEEeccccchhhH-------HHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKLA-------VSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~a-------~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+.-++ .++|++.|||.|++-+
T Consensus 222 N~VVlKPs~~tpl~~~~~~~~l~e~l~eAGlP~gvv~l 259 (551)
T TIGR02288 222 NPVLVKPHPGAILPLALTVQVAREVLGEAGFDPNLVTL 259 (551)
T ss_pred CeEEEECCcccchhHHHHHHHHHHHHHHcCcChhHEEE
Confidence 577888888765543 3999999999998864
No 7
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=51.25 E-value=16 Score=29.45 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=23.8
Q ss_pred ccEEEeccccchh----hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK----LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~----~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+.. .+.++|++.|||.|++-.
T Consensus 127 N~Vi~Kps~~~p~~~~~~l~~~l~~aGlP~gvv~~ 161 (431)
T cd07104 127 NAVVLKPDSRTPVTGGLLIAEIFEEAGLPKGVLNV 161 (431)
T ss_pred CeEEeeCCCCChHHHHHHHHHHHHHcCCCcccEEE
Confidence 5678887776443 368999999999998864
No 8
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.
Probab=48.01 E-value=20 Score=29.26 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=24.1
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKL---AVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~---a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+..+ +.++|++.|||.|++-.
T Consensus 152 N~VIlKps~~~p~~~~~l~~~l~~ag~P~g~v~~ 185 (452)
T cd07147 152 CPFVLKPASRTPLSALILGEVLAETGLPKGAFSV 185 (452)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHcCCCcCcEEE
Confidence 47788888775444 57889999999998864
No 9
>cd07127 ALDH_PAD-PaaZ Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like. Phenylacetic acid degradation (PAD) proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida) are putative aromatic ring cleavage enzymes of the aerobic PA catabolic pathway. PaaZ mutants were defective for growth with PA as a sole carbon source due to interruption of the putative ring opening system. This CD is limited to bacterial monofunctional enzymes.
Probab=47.54 E-value=18 Score=31.29 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=24.2
Q ss_pred ccEEEeccccchhhH-------HHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKLA-------VSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~a-------~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+.-++ .++|++.|||.|++-+
T Consensus 222 N~VVvKPs~~a~ls~~~~~~~i~~~l~eAGlP~gvv~~ 259 (549)
T cd07127 222 NPVIVKPHPAAILPLAITVQVAREVLAEAGFDPNLVTL 259 (549)
T ss_pred CeEEEECCcccchhHHHHHHHHHHHHHHcCcCcccEEE
Confidence 567888887766543 3899999999999864
No 10
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=47.42 E-value=17 Score=30.12 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=23.4
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKL---AVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~---a~elL~~~gLP~GLLP~ 37 (102)
++.|+++++.+..+ ..++|++.|||.|++=+
T Consensus 164 N~VIlKps~~~p~~~~~l~~~~~~aGlP~gvv~~ 197 (488)
T TIGR02299 164 NTVVLKPAEWSPLTAARLAEIAKEAGLPDGVFNL 197 (488)
T ss_pred CEEEEECchhchHHHHHHHHHHHHcCcChhheeE
Confidence 56788887755443 57889999999998764
No 11
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=46.29 E-value=22 Score=29.48 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=23.2
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKL---AVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~---a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+..+ ..++|++.|||.|++=.
T Consensus 171 N~VvlKPs~~tp~~~~~l~~~~~~aglP~gvv~~ 204 (477)
T cd07113 171 CTIVIKPSEFTPLTLLRVAELAKEAGIPDGVLNV 204 (477)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHcCcCCCcEEE
Confidence 56778877755444 47889999999998764
No 12
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=45.78 E-value=22 Score=29.23 Aligned_cols=31 Identities=23% Similarity=0.069 Sum_probs=22.4
Q ss_pred ccEEEeccccchhhHH-------HHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKLAV-------SLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~a~-------elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+..+++ ++|++.|||.|++=+
T Consensus 149 N~VIlKps~~~p~~~~~~~~~~~~~l~~aGlP~gvv~~ 186 (465)
T cd07098 149 NAIVVKVSEQVAWSSGFFLSIIRECLAACGHDPDLVQL 186 (465)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 5677788877655544 556799999998753
No 13
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=45.78 E-value=23 Score=28.89 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=22.9
Q ss_pred ccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++... ..+.++|++.|||.|++=.
T Consensus 145 N~VVlKps~~~~~~~~~l~~~l~~aGlP~g~~~~ 178 (452)
T cd07102 145 NAVILKHSPQTPLCGERFAAAFAEAGLPEGVFQV 178 (452)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHhcCCCcCcEEE
Confidence 566777766543 3568889999999998753
No 14
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=45.72 E-value=22 Score=29.09 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=23.5
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+.. .+.+++++.|||.|++-.
T Consensus 149 N~VV~Kps~~~p~~~~~l~~~~~~aGlP~gvv~~ 182 (456)
T cd07110 149 CTVVLKPSELTSLTELELAEIAAEAGLPPGVLNV 182 (456)
T ss_pred CEEEEECcccchHHHHHHHHHHHHcCCCCCcEEE
Confidence 5677887766544 457889999999998864
No 15
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=44.95 E-value=24 Score=29.34 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=23.6
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKL---AVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~---a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+..+ ..+++++.|||.|++-.
T Consensus 155 N~vv~KPs~~tp~~~~~l~~~~~~aGlP~gv~~~ 188 (462)
T PRK13968 155 NGYLLKHAPNVMGCAQLIAQVFKDAGIPQGVYGW 188 (462)
T ss_pred CEEEEECCCcChHHHHHHHHHHHHcCcCcCcEEE
Confidence 56788887765443 57889999999999864
No 16
>PLN02315 aldehyde dehydrogenase family 7 member
Probab=44.83 E-value=22 Score=30.07 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=24.2
Q ss_pred cccEEEeccccchhh-------HHHHHHhCCCCCCCcCC
Q 047759 6 EGGIVKKGHEEGLKL-------AVSLLKKFELPEGLLPL 37 (102)
Q Consensus 6 ~~a~v~~g~~~~~~~-------a~elL~~~gLP~GLLP~ 37 (102)
-++.|++.++....+ +.++|++.|||.|++-.
T Consensus 182 GN~VVlKPs~~tp~~~~~~~~l~~~~~~~aGlP~gvv~~ 220 (508)
T PLN02315 182 GNCVVWKGAPTTPLITIAMTKLVAEVLEKNNLPGAIFTS 220 (508)
T ss_pred CCEEEeeCCCcChHHHHHHHHHHHHHHHHcCCCcccEEE
Confidence 356788887766544 46778999999999863
No 17
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=44.70 E-value=50 Score=20.69 Aligned_cols=15 Identities=33% Similarity=0.337 Sum_probs=11.1
Q ss_pred cccEEEEEecCeEEEEE
Q 047759 48 STGYMWIVQQNKVEHEF 64 (102)
Q Consensus 48 ~tG~f~v~l~~~c~~~f 64 (102)
.+|.|+|++++ +.-|
T Consensus 41 ~~G~FEV~v~g--~lI~ 55 (76)
T PF10262_consen 41 STGAFEVTVNG--ELIF 55 (76)
T ss_dssp STT-EEEEETT--EEEE
T ss_pred cCCEEEEEEcc--EEEE
Confidence 68999999998 4444
No 18
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=44.32 E-value=23 Score=29.88 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=24.4
Q ss_pred cccEEEeccccchhhH-------HHHHHhCCCCCCCcCC
Q 047759 6 EGGIVKKGHEEGLKLA-------VSLLKKFELPEGLLPL 37 (102)
Q Consensus 6 ~~a~v~~g~~~~~~~a-------~elL~~~gLP~GLLP~ 37 (102)
-+|.|+++++.+..++ .++|++.|||.|++=.
T Consensus 132 GNaVIlKps~~a~~s~~~~~~~l~~~l~eaGlP~gvv~~ 170 (488)
T TIGR02518 132 RNAIVFSPHPNAKKCIIETVKLMRKAAEEAGAPEGAIGC 170 (488)
T ss_pred CCcEEEECCccchHHHHHHHHHHHHHHHHcCcCcccEEE
Confidence 4688999988776654 3456899999999863
No 19
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=44.06 E-value=24 Score=29.23 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=23.2
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.+.. ...++|++.|||.|++-.
T Consensus 152 N~VV~Kps~~~p~~~~~l~~l~~~aGlP~gvv~~ 185 (457)
T PRK09406 152 NVGLLKHASNVPQTALYLADLFRRAGFPDGCFQT 185 (457)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHhCCCcCcEEE
Confidence 5677887775444 357889999999999863
No 20
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=43.68 E-value=25 Score=28.67 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=23.2
Q ss_pred ccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+. ..+.++|++.|||.|++-.
T Consensus 146 N~VIlkps~~~p~~~~~l~~~l~~aglP~g~v~~ 179 (455)
T cd07093 146 NTVVLKPSEWTPLTAWLLAELANEAGLPPGVVNV 179 (455)
T ss_pred CEEEeECCCcCcHHHHHHHHHHHhcCCCccceEE
Confidence 456777765544 3578899999999998874
No 21
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=43.44 E-value=25 Score=29.03 Aligned_cols=31 Identities=26% Similarity=0.345 Sum_probs=23.3
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|+++.+.+.. .+.++|.+.|||.|++=+
T Consensus 164 N~VvlKps~~~p~~~~~l~~~l~~aGlP~gvv~~ 197 (478)
T cd07131 164 NTVVFKPAEDTPACALKLVELFAEAGLPPGVVNV 197 (478)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHhcCcCCCcEEE
Confidence 4677787766443 457889999999999864
No 22
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=43.38 E-value=73 Score=20.43 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=30.0
Q ss_pred cccEEEEEecCeEEEEEeecCeEEEEceEEEEEEecCceeccceeEEEEE
Q 047759 48 STGYMWIVQQNKVEHEFKMISKLVSYDTEINGYVDKMKIKKLRGVKAKEL 97 (102)
Q Consensus 48 ~tG~f~v~l~~~c~~~f~~~~~~v~Y~~~ItG~l~~g~i~~L~GVk~k~l 97 (102)
.++.|.|.|.. +..+- ..|+|++...+|+=+.|=++++-
T Consensus 16 ~~~~f~V~l~n---------g~~vl--a~i~GKmr~~rI~I~~GD~V~Ve 54 (68)
T TIGR00008 16 PNAMFRVELEN---------GHEVL--AHISGKIRMHYIRILPGDKVKVE 54 (68)
T ss_pred CCCEEEEEECC---------CCEEE--EEecCcchhccEEECCCCEEEEE
Confidence 36788888876 33333 67899999999999999888776
No 23
>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like. NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.
Probab=42.88 E-value=26 Score=28.89 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=24.1
Q ss_pred cccEEEeccccchh----hHHHHHHhCCCCCCCcCC
Q 047759 6 EGGIVKKGHEEGLK----LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 6 ~~a~v~~g~~~~~~----~a~elL~~~gLP~GLLP~ 37 (102)
-++.|++.++.+.. .+.++|++.|||.|++-+
T Consensus 158 GN~Vi~Kps~~~p~~~~~~l~~~l~~aG~P~gvv~~ 193 (465)
T cd07151 158 GNAVVLKPASDTPITGGLLLAKIFEEAGLPKGVLNV 193 (465)
T ss_pred CCEEEEECCCCCcHhHHHHHHHHHHHcCcCccceEE
Confidence 35678888765533 457899999999998874
No 24
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=42.74 E-value=35 Score=22.93 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=18.1
Q ss_pred CceEEEEEccccEEEEEecC
Q 047759 39 NVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 39 ~V~~y~l~~~tG~f~v~l~~ 58 (102)
+|++|-.|.+||++++...+
T Consensus 31 gl~G~V~N~~DGsVeiva~G 50 (92)
T COG1254 31 GLTGWVKNLDDGSVEIVAEG 50 (92)
T ss_pred CCEEEEEECCCCeEEEEEEc
Confidence 78999999999999998765
No 25
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=42.63 E-value=23 Score=29.07 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=22.7
Q ss_pred ccEEEeccccc---hhhHHHHHHhCCCCCCCcC
Q 047759 7 GGIVKKGHEEG---LKLAVSLLKKFELPEGLLP 36 (102)
Q Consensus 7 ~a~v~~g~~~~---~~~a~elL~~~gLP~GLLP 36 (102)
++.|++..+.+ ...+.++|++.|||.|++=
T Consensus 145 N~Vv~Kps~~~~~~~~~l~~~~~~aGlP~g~~~ 177 (457)
T cd07090 145 NAMVYKPSPFTPLTALLLAEILTEAGLPDGVFN 177 (457)
T ss_pred CeeeecCCCcCcHHHHHHHHHHHHcCCCcccEE
Confidence 45677777654 3456899999999999975
No 26
>PRK10090 aldehyde dehydrogenase A; Provisional
Probab=42.59 E-value=27 Score=28.63 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=23.5
Q ss_pred ccEEEeccccc---hhhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEG---LKLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~---~~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+ .....+++++.|||.|++=.
T Consensus 100 N~VvlKps~~~p~~~~~l~~~~~~aglP~gv~~~ 133 (409)
T PRK10090 100 NTIVIKPSEFTPNNAIAFAKIVDEIGLPKGVFNL 133 (409)
T ss_pred CEEEEECCCcChHHHHHHHHHHHHcCCCcccEEE
Confidence 56777877655 44567899999999998864
No 27
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=42.56 E-value=26 Score=28.55 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=23.0
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+.. .+.++|++.|||.|++-+
T Consensus 148 N~VilKps~~~p~t~~~l~~~~~~ag~P~g~v~~ 181 (451)
T cd07150 148 NTVVLKPSEETPVIGLKIAEIMEEAGLPKGVFNV 181 (451)
T ss_pred CeEEEECCccCcHHHHHHHHHHHHhCCCcCcEEE
Confidence 4667777765544 447889999999998864
No 28
>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed
Probab=41.82 E-value=27 Score=29.49 Aligned_cols=31 Identities=29% Similarity=0.318 Sum_probs=23.5
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKL---AVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~---a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.+..+ +.++|++.|||.|++=.
T Consensus 183 N~VIlKPs~~tp~~~~~l~~ll~eaGlP~gvv~~ 216 (524)
T PRK09407 183 NAVVLKPDSQTPLTALAAVELLYEAGLPRDLWQV 216 (524)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHcCCCcccEEE
Confidence 56788887765444 47899999999998853
No 29
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=41.62 E-value=29 Score=28.43 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=23.6
Q ss_pred ccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+. ..+.+++++.|||.|++-.
T Consensus 146 N~VvlKps~~~p~~~~~l~~~~~~aGlP~gv~~~ 179 (454)
T cd07109 146 NAVVVKPAEDAPLTALRLAELAEEAGLPAGALNV 179 (454)
T ss_pred CEEEEECCCCChHHHHHHHHHHHHcCcCccceEE
Confidence 567778776643 3467889999999999864
No 30
>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional
Probab=41.02 E-value=22 Score=29.11 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=23.1
Q ss_pred ccEEEeccccchhhHHHH-------HHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKLAVSL-------LKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~a~el-------L~~~gLP~GLLP~ 37 (102)
++.|++.++.+..++..+ |++.|||.|++-.
T Consensus 142 N~vVlKPs~~tp~t~~~l~~l~~~~l~~aGlP~gv~~~ 179 (417)
T PRK00197 142 NAVILRGGSEAIHSNRALVAVIQEALEEAGLPADAVQL 179 (417)
T ss_pred CeEEEecChhhhHHHHHHHHHHHHHHHHcCcChhhEEE
Confidence 567888888776665433 6788999999874
No 31
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=40.06 E-value=15 Score=22.19 Aligned_cols=18 Identities=28% Similarity=0.387 Sum_probs=15.7
Q ss_pred EEEEecCceeccceeEEE
Q 047759 78 NGYVDKMKIKKLRGVKAK 95 (102)
Q Consensus 78 tG~l~~g~i~~L~GVk~k 95 (102)
-|.+++-+-++|+||+++
T Consensus 29 GGtVaPSSss~lTGv~~q 46 (46)
T PF02402_consen 29 GGTVAPSSSSELTGVAVQ 46 (46)
T ss_pred CceECCCccceeeeeecC
Confidence 688999999999999864
No 32
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=39.71 E-value=30 Score=28.21 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=23.1
Q ss_pred ccEEEeccccchhh----HHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKL----AVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~----a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++....+ +.++|++.|||.|++-+
T Consensus 139 N~VvlKps~~~p~~~~~~l~~~~~~ag~P~gvv~~ 173 (443)
T cd07152 139 NAVVLKPDPRTPVSGGVVIARLFEEAGLPAGVLHV 173 (443)
T ss_pred CEEEEECCcccchhHHHHHHHHHHHhCcCcCcEEE
Confidence 46777877755433 35899999999999864
No 33
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=39.66 E-value=31 Score=28.52 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=23.5
Q ss_pred cccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 6 EGGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 6 ~~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
-++.|++.++.+. ..+.++|.+.|||.|++=.
T Consensus 162 GN~VilKps~~~p~~~~~l~~~~~~aGlP~gv~~~ 196 (482)
T cd07119 162 GNTVVIKPSEVTPLTTIALFELIEEAGLPAGVVNL 196 (482)
T ss_pred CCEEEEECCccccHHHHHHHHHHHHcCCCcCcEEE
Confidence 3567788776543 3567899999999998753
No 34
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=39.56 E-value=45 Score=22.68 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=23.9
Q ss_pred hhhHHHHHHhCCCCC------CCcCCCCceEEEEEccccEEEEEecC
Q 047759 18 LKLAVSLLKKFELPE------GLLPLANVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 18 ~~~a~elL~~~gLP~------GLLP~~~V~~y~l~~~tG~f~v~l~~ 58 (102)
...|.++|+++|+|. |-.+ +. -.||..||.+||+.-+
T Consensus 66 v~~a~~~L~~~gi~I~a~dvGG~~~-R~---v~f~~~tG~v~vk~~~ 108 (114)
T PF03975_consen 66 VEAARELLAEEGIPIVAEDVGGNFG-RK---VRFDPATGEVWVKRIG 108 (114)
T ss_dssp HHHHHHHHHHTT--EEEEEE-SSS--EE---EEEETTTTEEEEE---
T ss_pred HHHHHHHHHHCCCcEEEeeCCCCCC-cE---EEEEcCCCEEEEEECC
Confidence 357899999999993 5555 23 4578899999998754
No 35
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=39.43 E-value=32 Score=28.07 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=22.7
Q ss_pred ccEEEeccccc---hhhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEG---LKLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~---~~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.+ ...+.++|++.|||.|++-.
T Consensus 127 N~VVlKps~~~p~~~~~l~~~~~~aGlP~gv~~~ 160 (432)
T cd07105 127 NTVVLKASELSPRTHWLIGRVFHEAGLPKGVLNV 160 (432)
T ss_pred CEEEEECCccChHHHHHHHHHHHHcCcCCCcEEE
Confidence 46677766653 34567889999999998863
No 36
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=39.43 E-value=33 Score=28.20 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=22.8
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.+.. .+.++|++.|||.|++=.
T Consensus 162 N~VVlKps~~~p~~~~~l~~~~~~aglP~gvv~~ 195 (468)
T cd07088 162 NTIVIKPSEETPLNALEFAELVDEAGLPAGVLNI 195 (468)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHcCcCccceEE
Confidence 4567777665443 567899999999998753
No 37
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=38.63 E-value=30 Score=28.37 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=23.5
Q ss_pred ccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+. ..+.++|++.|||.|++-.
T Consensus 146 N~Vi~Kps~~~p~~~~~l~~~~~~aGlP~~~~~~ 179 (453)
T cd07115 146 NTVVLKPAELTPLSALRIAELMAEAGFPAGVLNV 179 (453)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHhcCcCchheEE
Confidence 567888776543 3467899999999998874
No 38
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=38.45 E-value=34 Score=28.39 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=23.4
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|+++.+.+.. ...++|++.|||.|++=+
T Consensus 168 N~vvlKPs~~tp~t~~~l~~l~~~aglP~g~~~~ 201 (481)
T TIGR03216 168 NTVVVKPSEETPGTATLLGEVMNAVGVPKGVYNV 201 (481)
T ss_pred CEEEEECCccchHHHHHHHHHHHHcCCCcCceEE
Confidence 4567887765444 457899999999999874
No 39
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=38.22 E-value=33 Score=28.33 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=23.3
Q ss_pred ccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+. ..+.++|.+.|||.|++-.
T Consensus 170 N~VvlKps~~~p~~~~~l~~~~~~aglP~g~~~~ 203 (476)
T cd07091 170 NTVVLKPAEQTPLSALYLAELIKEAGFPPGVVNI 203 (476)
T ss_pred CEEEEeCCCCChHHHHHHHHHHHHcCcCCCcEEE
Confidence 566788776643 4567899999999998753
No 40
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=37.94 E-value=32 Score=28.77 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=23.5
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|+++++.+.. .+.++|++.|||.|++=.
T Consensus 176 N~VVlKps~~tp~~~~~l~~~~~~aGlP~gvv~~ 209 (480)
T cd07111 176 NTVVLKPAEYTPLTALLFAEICAEAGLPPGVLNI 209 (480)
T ss_pred CEEEEECCCCChHHHHHHHHHHHhcCCCcccEEE
Confidence 5678888765443 457889999999998864
No 41
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=37.86 E-value=34 Score=28.35 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=23.7
Q ss_pred ccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.+. ..+.++|++.|||.|++=+
T Consensus 173 N~VV~Kps~~~p~~~~~l~~~~~~aglP~gv~~~ 206 (484)
T cd07144 173 NTVVIKPAENTPLSLLYFANLVKEAGFPPGVVNI 206 (484)
T ss_pred CEEEEECCccchHHHHHHHHHHHHhCcCCCcEEE
Confidence 567788776654 3467899999999999874
No 42
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=37.62 E-value=28 Score=28.65 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=28.0
Q ss_pred cccccEEEeccccchhhHHHHHHhCCCCCCCc
Q 047759 4 EKEGGIVKKGHEEGLKLAVSLLKKFELPEGLL 35 (102)
Q Consensus 4 ~~~~a~v~~g~~~~~~~a~elL~~~gLP~GLL 35 (102)
-|.+.||..=.....+++.+.|++.|||.|==
T Consensus 66 ~rqg~ei~~i~~e~~~~v~~~L~~iG~~~G~~ 97 (317)
T COG2221 66 SRQGLEIPGISPEDADDVVEELREIGLPVGST 97 (317)
T ss_pred ecCceEeccCCHHHHHHHHHHHHHcCCCCCCc
Confidence 47888999877888999999999999999854
No 43
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=37.14 E-value=36 Score=28.28 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=23.7
Q ss_pred cccEEEeccccchhhHH-------HHHHhCCCCCCCcCC
Q 047759 6 EGGIVKKGHEEGLKLAV-------SLLKKFELPEGLLPL 37 (102)
Q Consensus 6 ~~a~v~~g~~~~~~~a~-------elL~~~gLP~GLLP~ 37 (102)
-++.|++.++.+..++. ++|++.|||.|++=.
T Consensus 160 GN~VvlKps~~~p~~~~~l~~l~~~~~~~aglP~gv~~~ 198 (474)
T cd07130 160 GNVVVWKPSPTTPLTAIAVTKIVARVLEKNGLPGAIASL 198 (474)
T ss_pred CCeEEeeCCccCHHHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 35778888887766543 456899999999864
No 44
>KOG2455 consensus Delta-1-pyrroline-5-carboxylate dehydrogenase [Amino acid transport and metabolism]
Probab=37.11 E-value=21 Score=31.16 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=14.2
Q ss_pred hHHHHHHhCCCCCCCc
Q 047759 20 LAVSLLKKFELPEGLL 35 (102)
Q Consensus 20 ~a~elL~~~gLP~GLL 35 (102)
-+|.+|+|-|||.|.+
T Consensus 241 ii~~il~EAGlP~Gvi 256 (561)
T KOG2455|consen 241 IIYRILREAGLPPGVI 256 (561)
T ss_pred HHHHHHHHcCCCccce
Confidence 4689999999999986
No 45
>cd07146 ALDH_PhpJ Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like. Putative phosphonoformaldehyde dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog reportedly involved in the biosynthesis of phosphinothricin tripeptides in Streptomyces viridochromogenes DSM 40736, and similar sequences are included in this CD.
Probab=36.93 E-value=38 Score=27.90 Aligned_cols=31 Identities=29% Similarity=0.325 Sum_probs=23.5
Q ss_pred ccEEEeccccc---hhhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEG---LKLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~---~~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+ ...+.++|++.|||.|++-.
T Consensus 149 N~VilKps~~~p~~~~~l~~~l~~aglP~g~v~~ 182 (451)
T cd07146 149 NRIVLKPSEKTPLSAIYLADLLYEAGLPPDMLSV 182 (451)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHcCcCccceEE
Confidence 45778877664 34578889999999998864
No 46
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=36.89 E-value=38 Score=27.91 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=23.0
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+.. .+.++|++.|||.|++=.
T Consensus 148 N~Vi~Kps~~~p~~~~~l~~~~~~aG~P~g~~~~ 181 (454)
T cd07118 148 CTVVVKPSEFTSGTTLMLAELLIEAGLPAGVVNI 181 (454)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHhcCCCccceEE
Confidence 5677777765443 456889999999998864
No 47
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=36.77 E-value=37 Score=28.21 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=23.5
Q ss_pred cccEEEeccccchhh---HHHHHHhCCCCCCCcCC
Q 047759 6 EGGIVKKGHEEGLKL---AVSLLKKFELPEGLLPL 37 (102)
Q Consensus 6 ~~a~v~~g~~~~~~~---a~elL~~~gLP~GLLP~ 37 (102)
-++.|++.++.+..+ +.++|++.|||.|++=+
T Consensus 173 GN~VVlKps~~~p~~~~~l~~~l~~aGlP~gvv~~ 207 (481)
T cd07141 173 GNTVVLKPAEQTPLTALYLASLIKEAGFPPGVVNV 207 (481)
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHcCcCccceEE
Confidence 356788877765443 56889999999998753
No 48
>PF09351 DUF1993: Domain of unknown function (DUF1993); InterPro: IPR018531 This family of proteins are functionally uncharacterised. ; PDB: 2OQM_C 3QTH_A.
Probab=36.63 E-value=22 Score=26.07 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=10.1
Q ss_pred hhHHHHHHhCCCCCC
Q 047759 19 KLAVSLLKKFELPEG 33 (102)
Q Consensus 19 ~~a~elL~~~gLP~G 33 (102)
.+||.+||..|.|-|
T Consensus 142 ttAYaILR~~GV~lG 156 (162)
T PF09351_consen 142 TTAYAILRHKGVPLG 156 (162)
T ss_dssp HHHHHHHHHCT----
T ss_pred HHHHHHHHhcCCCCC
Confidence 489999999999987
No 49
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=36.56 E-value=37 Score=27.87 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=22.7
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.... .+.+++++.|||.|++=.
T Consensus 146 N~VvlKps~~~p~~~~~l~~~~~~aGlP~gvv~~ 179 (448)
T TIGR01780 146 CTVVVKPAEQTPLSALALARLAEQAGIPKGVLNV 179 (448)
T ss_pred CeEeeECCccchHHHHHHHHHHHHcCCCccceEE
Confidence 5667777765433 467889999999998753
No 50
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=36.26 E-value=36 Score=27.67 Aligned_cols=31 Identities=29% Similarity=0.322 Sum_probs=23.6
Q ss_pred ccEEEeccccc---hhhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEG---LKLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~---~~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.. ...+.++|++.|||.|++-.
T Consensus 146 N~VIlKps~~~~~~~~~l~~~l~~aglP~g~v~~ 179 (451)
T cd07103 146 CTVVLKPAEETPLSALALAELAEEAGLPAGVLNV 179 (451)
T ss_pred CEEEEECCccCcHHHHHHHHHHHHcCCCcccEEE
Confidence 46777877654 45678999999999998764
No 51
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=36.14 E-value=69 Score=20.41 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=12.2
Q ss_pred ceEEEEEEecCceec
Q 047759 74 DTEINGYVDKMKIKK 88 (102)
Q Consensus 74 ~~~ItG~l~~g~i~~ 88 (102)
.+.|+|+++.|+|+.
T Consensus 15 GtVv~G~v~~G~v~~ 29 (87)
T cd03694 15 GTVVGGTVSKGVIRL 29 (87)
T ss_pred ceEEEEEEecCEEeC
Confidence 568899999998873
No 52
>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.
Probab=36.07 E-value=37 Score=28.17 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=23.4
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKL---AVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~---a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+....+ +.++|++.|||.|++-+
T Consensus 165 N~VilKps~~~p~~~~~l~~~l~~aglP~g~~~~ 198 (477)
T TIGR01722 165 NTFVLKPSEKVPSAAVKLAELFSEAGAPDGVLNV 198 (477)
T ss_pred CEEEeeCcccChHHHHHHHHHHHHhCcCCCeEEE
Confidence 45677877664443 67899999999999874
No 53
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=36.03 E-value=37 Score=28.17 Aligned_cols=32 Identities=34% Similarity=0.419 Sum_probs=23.8
Q ss_pred cccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 6 EGGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 6 ~~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
-++.|++.++... ..+.++|++.|||.|++-+
T Consensus 169 GN~VV~KPs~~tp~~~~~l~~~~~~aGlP~gvv~~ 203 (476)
T cd07142 169 GNTIVLKPAEQTPLSALLAAKLAAEAGLPDGVLNI 203 (476)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHHcCcCcccEEE
Confidence 3567788776533 3467889999999999864
No 54
>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.
Probab=35.98 E-value=38 Score=28.39 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=23.2
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKL---AVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~---a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.+..+ ..+++.+.|||.|++=.
T Consensus 176 N~VVlKPs~~tp~~~~~l~~~~~~aglP~gv~~~ 209 (486)
T cd07140 176 NTVVLKPAQVTPLTALKFAELTVKAGFPKGVINI 209 (486)
T ss_pred CEEEEECCccCcHHHHHHHHHHHHcCcCCCcEEE
Confidence 56778887765544 46778899999998864
No 55
>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.
Probab=35.71 E-value=40 Score=28.03 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=23.0
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.... .+.++|++.|||.|++-+
T Consensus 168 N~VvlKps~~~p~~~~~l~~~~~~aGlP~gvv~~ 201 (472)
T TIGR03250 168 NRMVVKPSEKTPLSALYLADILYEAGLPPQMLQV 201 (472)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHcCCCcccEEE
Confidence 5677787755433 468899999999998864
No 56
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=35.37 E-value=39 Score=27.95 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=23.7
Q ss_pred ccEEEeccccc---hhhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEG---LKLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~---~~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.. ...+.++|++.|||.|++-+
T Consensus 165 N~VvlKps~~tp~~~~~l~~~l~~aGlP~gvv~~ 198 (478)
T cd07085 165 NTFVLKPSERVPGAAMRLAELLQEAGLPDGVLNV 198 (478)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHhCCCCCcEEE
Confidence 46677777664 44567899999999999875
No 57
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.
Probab=35.32 E-value=38 Score=28.21 Aligned_cols=31 Identities=35% Similarity=0.333 Sum_probs=22.8
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|+++.+.+.. .+.+++++.|||.|++=.
T Consensus 161 N~VVlKPs~~tp~t~~~l~~~~~~aGlP~gvv~~ 194 (484)
T TIGR03240 161 NTVVFKPSELTPWVAEETVKLWEKAGLPAGVLNL 194 (484)
T ss_pred CEEEEECCccccHHHHHHHHHHHHhCcCcccEEE
Confidence 5678888776544 456778999999998753
No 58
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=35.31 E-value=41 Score=27.58 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=22.7
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.+.. .+.++|++.|||.|++=.
T Consensus 147 N~vvlKps~~~p~~~~~l~~~~~~aglP~gv~~~ 180 (454)
T cd07101 147 NAVVLKPDSQTALTALWAVELLIEAGLPRDLWQV 180 (454)
T ss_pred CEEEEECCccchHHHHHHHHHHHHcCcCCCcEEE
Confidence 4567777765543 457889999999998853
No 59
>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.
Probab=34.36 E-value=42 Score=28.27 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=23.4
Q ss_pred ccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.+. ....++|.+.|||.|++=+
T Consensus 196 N~VVlKps~~tp~~~~~l~~ll~eaGlP~gvv~v 229 (518)
T cd07125 196 NTVIAKPAEQTPLIAARAVELLHEAGVPRDVLQL 229 (518)
T ss_pred CEEEEeCCCcCcHHHHHHHHHHHHcCCCCCcEEE
Confidence 466777776544 4578899999999998753
No 60
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=34.35 E-value=39 Score=28.20 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=21.7
Q ss_pred ccEEEeccccchhhH-------HHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKLA-------VSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~a-------~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+..++ .+.|++.|||.|+|-.
T Consensus 124 N~VVlKPs~~tp~~~~~l~~l~~~~l~~aG~P~gvv~~ 161 (439)
T cd07081 124 NSIIFSPHPRAKKVTQRAATLLLQAAVAAGAPENLIGW 161 (439)
T ss_pred CeEEEECCccchHHHHHHHHHHHHHHHHcCCChhhEEE
Confidence 567888887665444 3344578999999863
No 61
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=34.02 E-value=23 Score=24.93 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=15.2
Q ss_pred CCCCCcCCCCceEEEEEccccE
Q 047759 30 LPEGLLPLANVVEVGYVESTGY 51 (102)
Q Consensus 30 LP~GLLP~~~V~~y~l~~~tG~ 51 (102)
=|+|+||++|+.-=.+ ++|+
T Consensus 41 E~kyilpLdnLk~Rdv--e~gf 60 (110)
T cd01256 41 EKKYMLPLDGLKLRDI--EGGF 60 (110)
T ss_pred cccceeeccccEEEee--cccc
Confidence 3899999999876655 3564
No 62
>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.
Probab=33.94 E-value=42 Score=28.01 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=23.4
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.+.. .+.++|.+.|||.|++-+
T Consensus 173 N~VvlKps~~~p~~~~~l~~~l~~aGlP~g~v~~ 206 (481)
T cd07143 173 NTIVLKPSELTPLSALYMTKLIPEAGFPPGVINV 206 (481)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHhcCcCcccEEE
Confidence 4677887765433 467889999999999874
No 63
>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.
Probab=33.67 E-value=41 Score=27.80 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=23.7
Q ss_pred ccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+. ..+.++|++.|||.|++-.
T Consensus 153 N~Vv~Kps~~~p~~~~~l~~~~~~aGlP~g~v~~ 186 (462)
T cd07112 153 NSVVLKPAEQSPLTALRLAELALEAGLPAGVLNV 186 (462)
T ss_pred CeeeeeCCCCCCHHHHHHHHHHHhcCCCCCcEEE
Confidence 567788776543 4567889999999998874
No 64
>PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=33.56 E-value=43 Score=28.13 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=23.5
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.+.. .+.++|.+.|||.|++=.
T Consensus 187 N~VIlKPs~~t~~~~~~l~~~l~~aglP~g~~~~ 220 (496)
T PLN00412 187 NAVVLKPPTQGAVAALHMVHCFHLAGFPKGLISC 220 (496)
T ss_pred CEEEEECCccCcHHHHHHHHHHHHhCCCcccEEE
Confidence 5677887776543 367899999999999853
No 65
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=33.35 E-value=45 Score=27.32 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=21.9
Q ss_pred ccEEEeccccch---hhHHHHHHhCCCCCCCcC
Q 047759 7 GGIVKKGHEEGL---KLAVSLLKKFELPEGLLP 36 (102)
Q Consensus 7 ~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP 36 (102)
++.|++.++... ..+.++|++.|||.|++=
T Consensus 148 N~Vilkps~~~p~~~~~l~~~l~~aglP~~vv~ 180 (457)
T cd07114 148 NTVVLKPSEHTPASTLELAKLAEEAGFPPGVVN 180 (457)
T ss_pred CeEEeECCccchHHHHHHHHHHHHcCcCCCcEE
Confidence 456777765543 346899999999999775
No 66
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=33.31 E-value=64 Score=16.05 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=12.8
Q ss_pred cCCCCceEEEEEccccEEEEE
Q 047759 35 LPLANVVEVGYVESTGYMWIV 55 (102)
Q Consensus 35 LP~~~V~~y~l~~~tG~f~v~ 55 (102)
||-..|.+.--| .+|.+||=
T Consensus 2 L~~n~I~~i~~D-~~G~lWig 21 (24)
T PF07494_consen 2 LPNNNIYSIYED-SDGNLWIG 21 (24)
T ss_dssp BSSSCEEEEEE--TTSCEEEE
T ss_pred CCCCeEEEEEEc-CCcCEEEE
Confidence 454567766666 56999973
No 67
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=33.31 E-value=46 Score=27.27 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=23.3
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+.. .+.++|++.|||.|++-.
T Consensus 152 N~VV~Kps~~~p~~~~~l~~~~~~ag~p~g~~~~ 185 (456)
T cd07145 152 NSVVVKPSSNTPLTAIELAKILEEAGLPPGVINV 185 (456)
T ss_pred CEEEEECCccchHHHHHHHHHHHHcCCCcccEEE
Confidence 5677887776544 457889999999999853
No 68
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=33.00 E-value=48 Score=27.02 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=23.1
Q ss_pred ccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+. ....++|.+.|||.|++-.
T Consensus 125 N~VV~Kps~~~p~~~~~l~~~l~~aglP~gvv~~ 158 (429)
T cd07100 125 NTVLLKHASNVPGCALAIEELFREAGFPEGVFQN 158 (429)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHcCCCcCcEEE
Confidence 456777766543 3468889999999999874
No 69
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=32.97 E-value=18 Score=22.35 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=38.1
Q ss_pred EEeccccchhhHHHHHHhCCCCCCCcCCCCceEEEEEccccEEEEEecC
Q 047759 10 VKKGHEEGLKLAVSLLKKFELPEGLLPLANVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 10 v~~g~~~~~~~a~elL~~~gLP~GLLP~~~V~~y~l~~~tG~f~v~l~~ 58 (102)
.+.|+....|-+.++.++||.+.-+|=. +|+...= ..-|.|.+.+++
T Consensus 8 ~f~g~~~~~piis~l~~~~~v~~nIl~g-~i~~i~~-~~~G~l~l~l~g 54 (76)
T PF09383_consen 8 TFTGNSAQEPIISQLIREFGVDVNILHG-NIEEIQG-TPFGILILELPG 54 (76)
T ss_dssp EEESCSSSSCHHHHHHHHHT-EEEEEEE-EEEEETT-EEEEEEEEEEES
T ss_pred EEcCCCcCchHHHHHHHHhCCCEEEEEE-EeEEcCC-eeEEEEEEEEEC
Confidence 5788888999999999999999999985 7776654 357999999865
No 70
>cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.
Probab=32.57 E-value=49 Score=28.02 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=32.4
Q ss_pred cccEEEeccccchhh---HHHHHHhCCCCCCCcCCCCceEEEEEccccEEEEEecCeEEEEE
Q 047759 6 EGGIVKKGHEEGLKL---AVSLLKKFELPEGLLPLANVVEVGYVESTGYMWIVQQNKVEHEF 64 (102)
Q Consensus 6 ~~a~v~~g~~~~~~~---a~elL~~~gLP~GLLP~~~V~~y~l~~~tG~f~v~l~~~c~~~f 64 (102)
-++.|++.++.+..+ ..++|++.|||.|+|-. |.+. +.+.|..-+.-+....+.|
T Consensus 197 GN~VVlKPs~~tp~~~~~l~~~l~~aGlP~gvv~v--v~g~--~~~~g~~L~~~~~v~~V~F 254 (522)
T cd07123 197 GNVVLWKPSDTAVLSNYLVYKILEEAGLPPGVINF--VPGD--GPVVGDTVLASPHLAGLHF 254 (522)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHcCcCCCcEEE--EecC--chHHHHHHhcCCCcCEEEE
Confidence 356777777765444 46889999999999874 4321 2223443333344344555
No 71
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=32.35 E-value=49 Score=27.79 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=23.1
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKL---AVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~---a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+..+ ..+++++.|||.|++=.
T Consensus 175 N~VVlKPs~~tp~~~~~l~~~~~~aglP~gvv~v 208 (482)
T PRK11241 175 CTMVLKPASQTPFSALALAELAIRAGIPAGVFNV 208 (482)
T ss_pred CEEEEECCCCChHHHHHHHHHHHHcCCCcccEEE
Confidence 56777777765444 46889999999998864
No 72
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=32.29 E-value=45 Score=26.54 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=19.3
Q ss_pred ccEEEeccccchhhHHHHHHhCCCCC
Q 047759 7 GGIVKKGHEEGLKLAVSLLKKFELPE 32 (102)
Q Consensus 7 ~a~v~~g~~~~~~~a~elL~~~gLP~ 32 (102)
+..+.- ++..-..|.|+|..+|||+
T Consensus 56 ~~~l~V-e~~~fa~Av~iL~~~GlPr 80 (246)
T COG4669 56 GTSLLV-EESDFAEAVEILNQNGLPR 80 (246)
T ss_pred ceEEEE-cHHHHHHHHHHHHhcCCCC
Confidence 334555 4557779999999999997
No 73
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=32.25 E-value=48 Score=27.76 Aligned_cols=31 Identities=13% Similarity=0.381 Sum_probs=22.8
Q ss_pred ccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+. ..+.++|++.|||.|++-.
T Consensus 183 N~VVlKPs~~tp~~~~~l~~~~~eaGlP~gvv~~ 216 (500)
T cd07083 183 NTVIAKPAEDAVVVGYKVFEIFHEAGFPPGVVQF 216 (500)
T ss_pred CeEEEeCCCcchHHHHHHHHHHHHcCCCCCceEE
Confidence 466777776543 3467889999999999864
No 74
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=31.96 E-value=48 Score=27.40 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=21.9
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLP 36 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP 36 (102)
++.|++..+.+.. .+.++|++.|||.|++=
T Consensus 164 N~VIlKps~~~p~~~~~l~~~~~~aGlP~gvv~ 196 (473)
T cd07097 164 NTVVFKPAELTPASAWALVEILEEAGLPAGVFN 196 (473)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHcCCCCcceE
Confidence 4567777665444 45688899999998765
No 75
>PF13619 KTSC: KTSC domain
Probab=31.87 E-value=1.2e+02 Score=18.26 Aligned_cols=21 Identities=24% Similarity=0.318 Sum_probs=18.3
Q ss_pred CCceEEEEEccccEEEEEecC
Q 047759 38 ANVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 38 ~~V~~y~l~~~tG~f~v~l~~ 58 (102)
..|.+.++|+++..+.|.+.+
T Consensus 4 s~I~~v~Yd~~~~~L~V~F~~ 24 (60)
T PF13619_consen 4 SNIRSVGYDPETRTLEVEFKS 24 (60)
T ss_pred CcccEEeECCCCCEEEEEEcC
Confidence 468899999999999999964
No 76
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=31.86 E-value=44 Score=27.53 Aligned_cols=31 Identities=26% Similarity=0.203 Sum_probs=23.4
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+.. .+.+++++.|||.|++=.
T Consensus 153 N~VvlKps~~~p~~~~~l~~~~~~aGlP~gvv~~ 186 (455)
T cd07148 153 CPVIVKPALATPLSCLAFVDLLHEAGLPEGWCQA 186 (455)
T ss_pred CEEEeeCCCcccHHHHHHHHHHHHcCCCcCcEEE
Confidence 5678888776544 456788999999999863
No 77
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.41 E-value=86 Score=22.87 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=28.9
Q ss_pred chhhHHHHHHhCCCCC------CCcCCCCceEEEEEccccEEEEEecC
Q 047759 17 GLKLAVSLLKKFELPE------GLLPLANVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 17 ~~~~a~elL~~~gLP~------GLLP~~~V~~y~l~~~tG~f~v~l~~ 58 (102)
..+.+.++|+++|+|. |--+ +. -.||.+||.+||+...
T Consensus 108 Ni~~a~~~L~~~gi~i~a~dvGG~~g-R~---i~f~~~tG~v~vk~~~ 151 (157)
T PRK13488 108 NIESAKETLKKLGIRIVAEDVGGDYG-RT---VKFDLKTGKVIVRKAN 151 (157)
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCCC-cE---EEEECCCCEEEEEEcC
Confidence 4568999999999995 5445 33 3578899999998654
No 78
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=31.35 E-value=49 Score=27.76 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=22.9
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|+++.+.... .+.++|++.|||.|++=+
T Consensus 186 N~VvlKps~~~p~~~~~l~~~~~~aGlP~g~v~~ 219 (494)
T PRK09847 186 NSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLNV 219 (494)
T ss_pred CEEEEeCCCCChHHHHHHHHHHHHcCcCcCcEEE
Confidence 5677887765433 467888999999998753
No 79
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=31.14 E-value=47 Score=28.41 Aligned_cols=31 Identities=35% Similarity=0.425 Sum_probs=23.3
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.+.. .+.++|++.|||.|++=.
T Consensus 224 N~VVlKPs~~tp~~~~~l~~ll~eaGlP~gvv~v 257 (538)
T PLN02466 224 NTIVLKTAEQTPLSALYAAKLLHEAGLPPGVLNV 257 (538)
T ss_pred CEEEeECCCCCcHHHHHHHHHHHhcCCCcccEEE
Confidence 5677787765433 467889999999999874
No 80
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=31.01 E-value=46 Score=27.75 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=22.1
Q ss_pred cccEEEeccccchhhH-------HHHHHhCCCCCCCcCC
Q 047759 6 EGGIVKKGHEEGLKLA-------VSLLKKFELPEGLLPL 37 (102)
Q Consensus 6 ~~a~v~~g~~~~~~~a-------~elL~~~gLP~GLLP~ 37 (102)
-++.|++..+.+..++ .+.|.+.|||.|++=.
T Consensus 123 GN~VVlKps~~tp~~~~~~~~~~~~~l~eaG~P~g~v~~ 161 (436)
T cd07122 123 RNAIIFSPHPRAKKCSIEAAKIMREAAVAAGAPEGLIQW 161 (436)
T ss_pred CCcEEEECCcchhhHHHHHHHHHHHHHHHcCCCchhEEE
Confidence 3567888887765543 3335688999999853
No 81
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like. N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
Probab=30.93 E-value=42 Score=27.55 Aligned_cols=53 Identities=28% Similarity=0.250 Sum_probs=32.5
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCCCCceEEEEEccccEEEEEecCeEEEEE
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPLANVVEVGYVESTGYMWIVQQNKVEHEF 64 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~~~V~~y~l~~~tG~f~v~l~~~c~~~f 64 (102)
++.|++.++.+.. -+.++|++.|||.|++-. |.+ +.+.|...+..+..-.+.|
T Consensus 126 N~VI~Kps~~~~~~~~~l~~~~~~ag~P~g~~~~--v~g---~~~~~~~l~~~~~v~~v~f 181 (431)
T cd07095 126 NTVVFKPSELTPAVAELMVELWEEAGLPPGVLNL--VQG---GRETGEALAAHEGIDGLLF 181 (431)
T ss_pred CEEEeeCCCCCcHHHHHHHHHHHHhCcChhHheE--EeC---cHHHHHHHhcCCCCCEEEE
Confidence 4677777765444 467889999999999874 543 2344554444443334444
No 82
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=30.82 E-value=54 Score=26.99 Aligned_cols=31 Identities=26% Similarity=0.355 Sum_probs=22.7
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.... -..++|++.|||.|++-.
T Consensus 159 N~Vv~Kps~~~p~~~~~l~~~~~~aGlP~g~v~~ 192 (466)
T cd07138 159 CTVVLKPSEVAPLSAIILAEILDEAGLPAGVFNL 192 (466)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHcCCCCCcEEE
Confidence 5667777665443 457888999999998864
No 83
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=30.71 E-value=1.9e+02 Score=22.49 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=31.7
Q ss_pred CCceEEEEEccccEEEEEecCeEEEEEeecCeEEEEceEEEEEEecCceeccceeEE
Q 047759 38 ANVVEVGYVESTGYMWIVQQNKVEHEFKMISKLVSYDTEINGYVDKMKIKKLRGVKA 94 (102)
Q Consensus 38 ~~V~~y~l~~~tG~f~v~l~~~c~~~f~~~~~~v~Y~~~ItG~l~~g~i~~L~GVk~ 94 (102)
+++.+-+||++++.+|.-.+.+... | .+.-+.+|-..+.-.-..+.+||..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i-~-----els~~G~vlr~i~l~g~~D~EgI~y 72 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEI-Y-----ELSLDGKVLRRIPLDGFGDYEGITY 72 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEE-E-----EEETT--EEEEEE-SS-SSEEEEEE
T ss_pred CCccccEEcCCCCeEEEEECCCCEE-E-----EEcCCCCEEEEEeCCCCCCceeEEE
Confidence 4689999999999999999886554 2 2222334555555555667777753
No 84
>TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1. This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate.
Probab=30.63 E-value=49 Score=28.24 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=22.8
Q ss_pred ccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+. ..+.++|++.|||.|+|=.
T Consensus 198 N~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~v 231 (533)
T TIGR01236 198 NTVIWKPSITATLSNYLTMRILEEAGLPPGVINF 231 (533)
T ss_pred CeEEEECCCcCCHHHHHHHHHHHhcCCCCCcEEE
Confidence 567777776443 3457889999999999864
No 85
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=30.55 E-value=1.3e+02 Score=25.17 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=25.9
Q ss_pred CCceEEEEEccccEEEEEe------cCeEEEEEeecCeEE
Q 047759 38 ANVVEVGYVESTGYMWIVQ------QNKVEHEFKMISKLV 71 (102)
Q Consensus 38 ~~V~~y~l~~~tG~f~v~l------~~~c~~~f~~~~~~v 71 (102)
-+|.+|.+|+++|++++-= +.||++.++..++.|
T Consensus 64 ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~v 103 (346)
T COG2706 64 GGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFV 103 (346)
T ss_pred CcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEE
Confidence 4799999999999998632 356999998766443
No 86
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=30.46 E-value=54 Score=27.59 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=22.8
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++-++.+.. .+.+++++.|||.|++-.
T Consensus 187 N~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~~ 220 (501)
T PLN02766 187 CTMVVKPAEQTPLSALFYAHLAKLAGVPDGVINV 220 (501)
T ss_pred CEEEEeCCCCchHHHHHHHHHHHhcCCCcCcEEE
Confidence 4567777665443 457889999999999874
No 87
>PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional
Probab=30.43 E-value=53 Score=27.66 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=22.3
Q ss_pred ccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.+. ..+.++|++.|||.|++=.
T Consensus 200 N~VVlKPs~~tp~~a~~l~~~l~~aGlP~gvv~v 233 (514)
T PRK03137 200 NTVLLKPASDTPVIAAKFVEVLEEAGLPAGVVNF 233 (514)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCCCCCcEEE
Confidence 456777665433 3467899999999998753
No 88
>PF08300 HCV_NS5a_1a: Hepatitis C virus non-structural 5a zinc finger domain; InterPro: IPR013192 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in the non-structural 5a protein (NS5a) in Hepatitis C virus. The molecular function of NS5a is uncertain, but it is phosphorylated when expressed in mammalian cells. It is thought to interact with the dsRNA dependent (interferon inducible) kinase PKR, P19525 from SWISSPROT [, ]. This region corresponds to the N-terminal zinc binding domain (1a) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004252 serine-type endopeptidase activity, 0008270 zinc ion binding, 0017111 nucleoside-triphosphatase activity, 0006355 regulation of transcription, DNA-dependent, 0006915 apoptosis, 0030683 evasion by virus of host immune response, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane; PDB: 1ZH1_B 3FQM_A 3FQQ_B.
Probab=30.40 E-value=51 Score=21.09 Aligned_cols=17 Identities=24% Similarity=0.428 Sum_probs=12.6
Q ss_pred ceEEEEEEecCceeccce
Q 047759 74 DTEINGYVDKMKIKKLRG 91 (102)
Q Consensus 74 ~~~ItG~l~~g~i~~L~G 91 (102)
...|||.|..|+|+ +.|
T Consensus 27 Ga~ItGhVknG~mr-i~g 43 (62)
T PF08300_consen 27 GAVITGHVKNGSMR-IYG 43 (62)
T ss_dssp S-EEEEEEETTEEE-EE-
T ss_pred CCEEeEEEeCCeEE-Eec
Confidence 46789999999998 544
No 89
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=30.18 E-value=50 Score=26.81 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=23.1
Q ss_pred ccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+. ..+.++|++.|||.|++-.
T Consensus 152 N~VI~Kps~~~p~~~~~l~~~l~~ag~P~gvv~~ 185 (453)
T cd07149 152 NAVVLKPASQTPLSALKLAELLLEAGLPKGALNV 185 (453)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHcCcCccceEE
Confidence 467777776443 3467889999999998874
No 90
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=29.07 E-value=72 Score=21.70 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=28.4
Q ss_pred EEEEccccEEEEEecCeEEEEEeec--CeEEEEceEEEEEEe
Q 047759 43 VGYVESTGYMWIVQQNKVEHEFKMI--SKLVSYDTEINGYVD 82 (102)
Q Consensus 43 y~l~~~tG~f~v~l~~~c~~~f~~~--~~~v~Y~~~ItG~l~ 82 (102)
+.++...|-+.+.++..-.+-+... .+++++++.|+|=-.
T Consensus 32 ~d~e~~~gVLti~~~~~~~~VINkQ~p~~QIWlsSpisG~~h 73 (109)
T PF01491_consen 32 IDVERSGGVLTIEFPDGGQYVINKQPPNRQIWLSSPISGPFH 73 (109)
T ss_dssp EEEEEETTEEEEEETTSEEEEEEEECCCTEEEEEETTTEEEE
T ss_pred eEEEccCCEEEEEECCCCEEEEeCCCHHHHHHHhcccCCceE
Confidence 3445567999999987666666553 678888888777543
No 91
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=28.91 E-value=91 Score=23.53 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=24.7
Q ss_pred EEEEccccE--EEEEecC---eEEEEEeecCeEEEEc--eEEEEEEecCce
Q 047759 43 VGYVESTGY--MWIVQQN---KVEHEFKMISKLVSYD--TEINGYVDKMKI 86 (102)
Q Consensus 43 y~l~~~tG~--f~v~l~~---~c~~~f~~~~~~v~Y~--~~ItG~l~~g~i 86 (102)
+.+.-|||+ +||.-+. .|.|.| .+.|. ..++|.+...++
T Consensus 16 ~~v~~DTGS~~~Wv~c~~~c~~c~c~~-----~i~Ygd~~~~~G~~~~D~v 61 (273)
T cd05475 16 YFLDIDTGSDLTWLQCDAPCTGCQCDY-----EIEYADGGSSMGVLVTDIF 61 (273)
T ss_pred EEEEEccCCCceEEeCCCCCCCCcCcc-----EeEeCCCCceEEEEEEEEE
Confidence 445556776 9995332 345655 56674 578888776665
No 92
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=28.82 E-value=45 Score=22.59 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=16.8
Q ss_pred hhHHHHHHhCCCCCCCcCCCCc
Q 047759 19 KLAVSLLKKFELPEGLLPLANV 40 (102)
Q Consensus 19 ~~a~elL~~~gLP~GLLP~~~V 40 (102)
+...+.|+.+|||.|=+=+++.
T Consensus 14 ~~l~~Fl~~~~~P~G~~~Lr~~ 35 (100)
T PF09949_consen 14 PFLRDFLRRNGFPAGPLLLRDY 35 (100)
T ss_pred HHHHHHHHhcCCCCCceEcccC
Confidence 4677888999999997765444
No 93
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.33 E-value=66 Score=20.92 Aligned_cols=34 Identities=9% Similarity=0.174 Sum_probs=26.6
Q ss_pred hhhHHHHHHhCCCCCCCcCCCCceEEEEEccccEE
Q 047759 18 LKLAVSLLKKFELPEGLLPLANVVEVGYVESTGYM 52 (102)
Q Consensus 18 ~~~a~elL~~~gLP~GLLP~~~V~~y~l~~~tG~f 52 (102)
-.++.+.|++||.|-=.+|. |+-+.++.-++-.+
T Consensus 18 ~rk~L~I~E~~~is~Eh~PS-GID~~Siii~~~~~ 51 (76)
T cd04911 18 GRKLLSILEDNGISYEHMPS-GIDDISIIIRDNQL 51 (76)
T ss_pred HHHHHHHHHHcCCCEeeecC-CCccEEEEEEcccc
Confidence 35889999999999999996 98877765444333
No 94
>cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), converts acetaldehyde into acetyl-CoA. This CD is limited to such monofunctional enzymes as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium. Mutations in eutE abolish the ability to utilize ethanolamine as a carbon source.
Probab=28.08 E-value=61 Score=26.80 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=22.5
Q ss_pred ccEEEeccccchhhHH---HHH----HhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKLAV---SLL----KKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~a~---elL----~~~gLP~GLLP~ 37 (102)
++.|++..+.+..++. +++ .+.|+|.|++-.
T Consensus 126 N~VVlKpse~tp~t~~~l~~l~~~~~~~aGlP~gvv~~ 163 (429)
T cd07121 126 NAVVFNPHPGAKKVSAYAVELINKAIAEAGGPDNLVVT 163 (429)
T ss_pred CCEEEECCccchhHHHHHHHHHHHHHHHcCCCcceEEE
Confidence 5788888887766554 333 478999999863
No 95
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.
Probab=27.96 E-value=66 Score=26.53 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=22.6
Q ss_pred ccEEEeccccc---hhhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEG---LKLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~---~~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+ ...+.++|++.|||.|++=.
T Consensus 152 N~vvlKps~~~p~~~~~l~~~~~~aglP~g~~~~ 185 (459)
T cd07089 152 NTVVLKPAPDTPLSALLLGEIIAETDLPAGVVNV 185 (459)
T ss_pred CEEEEECCCCChHHHHHHHHHHHHcCCCccceEE
Confidence 45677776654 34568899999999998764
No 96
>PLN02467 betaine aldehyde dehydrogenase
Probab=27.79 E-value=58 Score=27.48 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=23.1
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+.. .+.++|++.|||.|++-.
T Consensus 180 N~Vv~Kps~~tp~~~~~l~~~~~eag~P~gvv~~ 213 (503)
T PLN02467 180 CTAVLKPSELASVTCLELADICREVGLPPGVLNV 213 (503)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHcCcCcCeEEE
Confidence 5677887765443 456789999999999874
No 97
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=27.15 E-value=62 Score=26.93 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=22.5
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+.. ...++|++.|||.|++-+
T Consensus 171 N~Vv~Kps~~~p~t~~~l~~~~~~aglP~g~v~~ 204 (488)
T PRK13252 171 NAMIFKPSEVTPLTALKLAEIYTEAGLPDGVFNV 204 (488)
T ss_pred CeEEEeCCccCcHHHHHHHHHHHHcCcCcccEEE
Confidence 4567777665433 457889999999998864
No 98
>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.
Probab=27.10 E-value=64 Score=27.11 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=22.3
Q ss_pred ccEEEecccc---chhhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEE---GLKLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~---~~~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++. +...+.++|++.|||.|++=.
T Consensus 195 N~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~v 228 (512)
T cd07124 195 NTVVLKPAEDTPVIAAKLVEILEEAGLPPGVVNF 228 (512)
T ss_pred CEEEEECCccccHHHHHHHHHHHHhCcCCCceEE
Confidence 4566666654 344567899999999999864
No 99
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=27.06 E-value=70 Score=26.35 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=22.4
Q ss_pred ccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+. ..+.++|++.|||.|++=.
T Consensus 166 N~VvlKps~~~p~~~~~l~~~~~~aglP~gv~~~ 199 (471)
T cd07139 166 CTVVLKPSPETPLDAYLLAEAAEEAGLPPGVVNV 199 (471)
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHcCCCCCcEEE
Confidence 456777665443 3467889999999998863
No 100
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=26.73 E-value=1.3e+02 Score=22.54 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=29.6
Q ss_pred chhhHHHHHHhCCCC------CCCcCCCCceEEEEEccccEEEEEecC
Q 047759 17 GLKLAVSLLKKFELP------EGLLPLANVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 17 ~~~~a~elL~~~gLP------~GLLP~~~V~~y~l~~~tG~f~v~l~~ 58 (102)
..+.+.++|+++|+| .|--+ +.| .|+.+||.+|++.-.
T Consensus 113 Ni~~a~~~L~~~gI~i~a~DvGG~~g-R~v---~f~~~tG~v~~k~~~ 156 (184)
T PRK13497 113 NAAFAMQFLRDEGIPVVGSSTGGEHG-RKL---EYWPVSGRARQYPLT 156 (184)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCC-cEE---EEECCCCeEEEEEcC
Confidence 456899999999999 36666 444 467889999998754
No 101
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=26.47 E-value=1.3e+02 Score=23.09 Aligned_cols=38 Identities=18% Similarity=0.396 Sum_probs=30.5
Q ss_pred chhhHHHHHHhCCCC------CCCcCCCCceEEEEEccccEEEEEecC
Q 047759 17 GLKLAVSLLKKFELP------EGLLPLANVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 17 ~~~~a~elL~~~gLP------~GLLP~~~V~~y~l~~~tG~f~v~l~~ 58 (102)
..+.+.++|+++|+| .|-.+ +.| -|+..||.+||+...
T Consensus 140 Ni~~a~~~L~~~gI~Iva~DvGG~~g-Rki---~f~~~tG~v~vk~~~ 183 (213)
T PRK13493 140 NVEFVLEYAKREKLNVVAQDLGGAQP-RKL---LFDPQTGQAWVKRIG 183 (213)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCC-cEE---EEECCCCEEEEEEcC
Confidence 456899999999999 47777 455 467889999999765
No 102
>PLN02278 succinic semialdehyde dehydrogenase
Probab=26.27 E-value=70 Score=26.86 Aligned_cols=31 Identities=26% Similarity=0.240 Sum_probs=23.0
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.+.. .+.++|++.|||.|++=.
T Consensus 189 N~VVlKps~~tp~~~~~l~~~l~eaglP~gvv~~ 222 (498)
T PLN02278 189 CTVVVKPSELTPLTALAAAELALQAGIPPGVLNV 222 (498)
T ss_pred CEEEEECCCCChHHHHHHHHHHHHcCCCcccEEE
Confidence 5677777766543 357889999999998864
No 103
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain). This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.
Probab=26.17 E-value=70 Score=27.01 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=21.7
Q ss_pred ccEEEeccccc---hhhHHHHHHhCCCCCCCcC
Q 047759 7 GGIVKKGHEEG---LKLAVSLLKKFELPEGLLP 36 (102)
Q Consensus 7 ~a~v~~g~~~~---~~~a~elL~~~gLP~GLLP 36 (102)
++.|++.++.+ ...+.++|++.|||.|++=
T Consensus 189 N~VVlKps~~tp~~~~~l~~~~~~aGlP~gvv~ 221 (500)
T TIGR01238 189 NTVIAKPAEQTSLIAYRAVELMQEAGFPAGTIQ 221 (500)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHcCCCCCceE
Confidence 56677776653 3346788999999999875
No 104
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=26.04 E-value=1.3e+02 Score=18.63 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=10.1
Q ss_pred eEEEEEEecCcee
Q 047759 75 TEINGYVDKMKIK 87 (102)
Q Consensus 75 ~~ItG~l~~g~i~ 87 (102)
+.++|+|+.|.|+
T Consensus 16 ~vv~G~v~sG~i~ 28 (83)
T cd03696 16 TVVTGTVLSGSVK 28 (83)
T ss_pred EEEEEEEeecEEe
Confidence 4678888888876
No 105
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=26.02 E-value=1.4e+02 Score=17.16 Aligned_cols=34 Identities=18% Similarity=0.010 Sum_probs=26.6
Q ss_pred cchhhHHHHHHhCCCCCCCcCCCCceEEEEEccccEEEEEecC
Q 047759 16 EGLKLAVSLLKKFELPEGLLPLANVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 16 ~~~~~a~elL~~~gLP~GLLP~~~V~~y~l~~~tG~f~v~l~~ 58 (102)
.|..++-..|.+. ++|.+...|..++.+.|..+.
T Consensus 11 ~C~~~v~~~l~~~---------~GV~~v~vd~~~~~v~v~~~~ 44 (62)
T PF00403_consen 11 GCAKKVEKALSKL---------PGVKSVKVDLETKTVTVTYDP 44 (62)
T ss_dssp HHHHHHHHHHHTS---------TTEEEEEEETTTTEEEEEEST
T ss_pred HHHHHHHHHHhcC---------CCCcEEEEECCCCEEEEEEec
Confidence 4666666666653 489999999999999998764
No 106
>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.
Probab=25.85 E-value=99 Score=22.13 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=20.6
Q ss_pred hhhHHHHHHhCCCCCCCcCCCCceEEEEEccccEEEEEecC
Q 047759 18 LKLAVSLLKKFELPEGLLPLANVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 18 ~~~a~elL~~~gLP~GLLP~~~V~~y~l~~~tG~f~v~l~~ 58 (102)
.+.+..-+++.|||+-++|+ +.- .++.+.+...+
T Consensus 71 l~e~~~~ar~~glP~~~ipi-----ce~--~~~yYcl~~~g 104 (132)
T PF14567_consen 71 LPEVTADARSIGLPRELIPI-----CED--GGDYYCLDQEG 104 (132)
T ss_dssp HHHHHHHHHHHT--TTSEEE-----EEE--TTEEEEE-TTS
T ss_pred HHHHHHHHHHcCCChhheeE-----Eec--CCcEEEEeCCC
Confidence 34455567889999999997 432 35677777555
No 107
>PLN02542 fructose-1,6-bisphosphatase
Probab=25.44 E-value=1.2e+02 Score=25.84 Aligned_cols=20 Identities=15% Similarity=0.121 Sum_probs=16.9
Q ss_pred CCceEEEEEccccEEEEEec
Q 047759 38 ANVVEVGYVESTGYMWIVQQ 57 (102)
Q Consensus 38 ~~V~~y~l~~~tG~f~v~l~ 57 (102)
.+|.+|+||+++|.|.+.-+
T Consensus 259 ~GV~~FtLDp~~geFvLt~~ 278 (412)
T PLN02542 259 TGVFSFTLDPMYGEFVLTQE 278 (412)
T ss_pred CCEEEEEEcCCCCeEEEeCC
Confidence 48999999999999987643
No 108
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=25.41 E-value=1.5e+02 Score=21.82 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=29.0
Q ss_pred chhhHHHHHHhCCCCC------CCcCCCCceEEEEEccccEEEEEecC
Q 047759 17 GLKLAVSLLKKFELPE------GLLPLANVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 17 ~~~~a~elL~~~gLP~------GLLP~~~V~~y~l~~~tG~f~v~l~~ 58 (102)
..+.+.++|+++|+|. |--+ +.| .|+.+||.+||+.-.
T Consensus 116 Ni~~a~~~L~~~gi~i~a~DvGG~~g-R~i---~f~~~tG~v~vk~~~ 159 (167)
T PRK13498 116 NIHAALALAEQNGLHLKAQDLGSTGH-RSI---IFDLWNGNVWVRHQP 159 (167)
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCCCC-cEE---EEECCCCEEEEEECC
Confidence 4557899999999993 5555 344 577899999998754
No 109
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=25.19 E-value=71 Score=26.30 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=22.4
Q ss_pred ccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++... ..+.++|++.|||.|++=.
T Consensus 162 N~VvlKps~~tp~~~~~l~~~~~~aglP~gv~~~ 195 (467)
T TIGR01804 162 NAMVFKPSEITPLTALKVAELMEEAGLPDGVFNV 195 (467)
T ss_pred CEEEeeCCccCcHHHHHHHHHHHHcCcCcCcEEE
Confidence 456777766543 3557889999999998753
No 110
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=25.02 E-value=46 Score=25.87 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=8.8
Q ss_pred hCCCCCCCcCCCCceEEEE
Q 047759 27 KFELPEGLLPLANVVEVGY 45 (102)
Q Consensus 27 ~~gLP~GLLP~~~V~~y~l 45 (102)
+.|||.+|+| |.-|-|
T Consensus 202 Q~~fP~~L~p---V~myaL 217 (218)
T PF05891_consen 202 QKGFPKELYP---VRMYAL 217 (218)
T ss_dssp -TT--TTS-E---EEEEEE
T ss_pred ccCCCccceE---EEEEEe
Confidence 5689999999 555644
No 111
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=24.80 E-value=78 Score=26.27 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=21.6
Q ss_pred ccEEEeccccchh---hHHHHHHhC----CCCCCCcCC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKF----ELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~----gLP~GLLP~ 37 (102)
++.|++.++.+.. .+.+++++. |||.|++=.
T Consensus 162 N~VIlKps~~~p~~~~~l~~~~~~al~~~glP~gvv~~ 199 (478)
T cd07086 162 NTVVWKPSETTPLTAIAVTKILAEVLEKNGLPPGVVNL 199 (478)
T ss_pred CeEEEECCCcchHHHHHHHHHHHHhhhccCCCccceEE
Confidence 5678887775543 345666666 999998753
No 112
>TIGR03807 RR_fam_repeat putative cofactor-binding repeat. This model describes a small repeat found in a family of proteins that crosses the plasma membrane by twin-arginine translation, which usually signifies the presence of a bound cofactor. This repeat shows similarity to the beta-helical repeat, in which three beta-strands per repeat wind once per repeat around in a right-handed helical stack of parallel beta structure.
Probab=24.58 E-value=71 Score=17.13 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=12.7
Q ss_pred CeEEEEceEEEEEEec
Q 047759 68 SKLVSYDTEINGYVDK 83 (102)
Q Consensus 68 ~~~v~Y~~~ItG~l~~ 83 (102)
+.-++|++.|||++=.
T Consensus 9 G~y~~~d~~vsGNvIr 24 (27)
T TIGR03807 9 GIYLEFDAVVTGNVIR 24 (27)
T ss_pred EEEEeeeeEEecceec
Confidence 5668899999998743
No 113
>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.
Probab=24.24 E-value=71 Score=26.41 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=21.5
Q ss_pred ccEEEeccccchhhH-------HHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKLA-------VSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~a-------~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.+..++ +++|++.|||.|.+=+
T Consensus 136 N~VVlKps~~~p~t~~~l~~~~~~~l~~aGlP~gvv~~ 173 (454)
T cd07129 136 CPVVVKAHPAHPGTSELVARAIRAALRATGLPAGVFSL 173 (454)
T ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHHHhCCChhheEE
Confidence 567888877654433 3445789999998864
No 114
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=24.14 E-value=63 Score=20.26 Aligned_cols=15 Identities=40% Similarity=0.412 Sum_probs=12.4
Q ss_pred ceEEEEEEecCceec
Q 047759 74 DTEINGYVDKMKIKK 88 (102)
Q Consensus 74 ~~~ItG~l~~g~i~~ 88 (102)
.+.++|+|+.|+|+.
T Consensus 14 g~vv~G~v~~G~i~~ 28 (82)
T cd04089 14 GTVVLGKVESGTIKK 28 (82)
T ss_pred CEEEEEEEeeeEEec
Confidence 568899999999873
No 115
>PF08710 nsp9: nsp9 replicase; InterPro: IPR014822 Nsp9 is a single-stranded RNA-binding viral protein likely to be involved in RNA synthesis []. The structure comprises of a single beta barrel []. ; GO: 0003723 RNA binding, 0019079 viral genome replication, 0019034 viral replication complex; PDB: 2J97_A 2J98_A 3EE7_B 1QZ8_A 1UW7_A.
Probab=24.10 E-value=2.7e+02 Score=19.71 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=20.4
Q ss_pred CceEEEEEccccEEEEEecCeEEEEEeec-CeEEEE
Q 047759 39 NVVEVGYVESTGYMWIVQQNKVEHEFKMI-SKLVSY 73 (102)
Q Consensus 39 ~V~~y~l~~~tG~f~v~l~~~c~~~f~~~-~~~v~Y 73 (102)
+.+--.+..++|...+.|+-||....... +-.+.|
T Consensus 50 ~Lk~vk~~~d~G~v~ieLePPckF~v~~~~g~~vkY 85 (111)
T PF08710_consen 50 NLKYVKWEKDDGKVVIELEPPCKFAVDVPKGPEVKY 85 (111)
T ss_dssp -EEEEEEE-TTSEEEEEB---EEEEEEETTSEEEEE
T ss_pred CceEEEEEccCCEEEEecCCCcEEEEEcCCCcEEEE
Confidence 45555666789999999999777666554 444554
No 116
>PRK14445 acylphosphatase; Provisional
Probab=24.07 E-value=95 Score=20.29 Aligned_cols=20 Identities=20% Similarity=-0.022 Sum_probs=17.5
Q ss_pred CceEEEEEccccEEEEEecC
Q 047759 39 NVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 39 ~V~~y~l~~~tG~f~v~l~~ 58 (102)
++++|.-|.++|++++.+.+
T Consensus 31 gl~G~V~N~~dG~Vei~~qG 50 (91)
T PRK14445 31 NLSGWVRNLPDGTVEIEAQG 50 (91)
T ss_pred CCEEEEEECCCCeEEEEEEE
Confidence 67899999999999998865
No 117
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=23.86 E-value=81 Score=26.55 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=22.2
Q ss_pred ccEEEeccccch---hhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGL---KLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~---~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++.++.+. ..+.++|++.|||.|++=.
T Consensus 196 N~VVlKPs~~tp~~~~~l~~~~~~aGlP~gvv~v 229 (511)
T TIGR01237 196 NCVVLKPAETSTVIAAKIVEILIEAGLPPGVFQF 229 (511)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHhCCCCCcEEE
Confidence 456777666543 3456788899999998864
No 118
>cd07126 ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12), family 12: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. P5CDH is a mitochondrial enzyme involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. The P5CDH, ALDH12A1 gene, in Arabidopsis, has been identified as an osmotic-stress-inducible ALDH gene. This CD contains both Viridiplantae and Alveolata P5CDH sequences.
Probab=23.22 E-value=85 Score=26.63 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=22.3
Q ss_pred ccEEEeccccchhh---HHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKL---AVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~---a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+....+ +.+++.+.|||.|++=.
T Consensus 171 N~VVlKPSe~tp~~~~~l~~~~~~aGlP~gv~~v 204 (489)
T cd07126 171 NKPLLKVDSKVSVVMEQFLRLLHLCGMPATDVDL 204 (489)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhCcCcCcEEE
Confidence 56788887654444 45678899999998764
No 119
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=23.16 E-value=72 Score=28.06 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=22.9
Q ss_pred ccEEEeccccc---hhhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEG---LKLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~---~~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.+ ..-..+++++.|||.|++=+
T Consensus 278 NtVVlKPSe~tp~ta~~l~~l~~eAGlP~Gvvnv 311 (604)
T PLN02419 278 NTFILKPSEKDPGASVILAELAMEAGLPDGVLNI 311 (604)
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHhCcCcceEEE
Confidence 46677777654 33467889999999998764
No 120
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.12 E-value=1.7e+02 Score=21.46 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=28.6
Q ss_pred chhhHHHHHHhCCCCC------CCcCCCCceEEEEEccccEEEEEecC
Q 047759 17 GLKLAVSLLKKFELPE------GLLPLANVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 17 ~~~~a~elL~~~gLP~------GLLP~~~V~~y~l~~~tG~f~v~l~~ 58 (102)
..+.+.++|+++|+|. |--+ +.| .|+.+||.+||+...
T Consensus 106 Ni~~a~~~L~~~gI~i~a~dvGG~~g-R~i---~f~~~tG~v~vk~~~ 149 (159)
T PRK13495 106 NVEAVKKHLKDFGIKLVAEDTGGNRA-RSI---EYNIETGKLLVRKVG 149 (159)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCC-cEE---EEECCCCEEEEEEcC
Confidence 4457899999999993 5555 344 577889999998654
No 121
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=22.96 E-value=2e+02 Score=21.07 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=29.1
Q ss_pred chhhHHHHHHhCCCCC------CCcCCCCceEEEEEccccEEEEEecC
Q 047759 17 GLKLAVSLLKKFELPE------GLLPLANVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 17 ~~~~a~elL~~~gLP~------GLLP~~~V~~y~l~~~tG~f~v~l~~ 58 (102)
..+.|.++|+++|+|. |-.+ +.| .||..||.+||+...
T Consensus 113 Nv~~a~~~L~~~gI~i~a~dvGG~~g-R~i---~f~~~tG~v~vk~~~ 156 (162)
T PRK13490 113 NGKAVKKKLKELSIPILAEDIGGNKG-RTM---IFDTSDGKVYIKTVG 156 (162)
T ss_pred HHHHHHHHHHHcCCcEEEEECCCCCC-cEE---EEECCCCEEEEEEcC
Confidence 4567999999999993 6666 444 577889999998654
No 122
>PF05963 Cytomega_US3: Cytomegalovirus US3 protein; InterPro: IPR009237 US3 of human cytomegalovirus is an endoplasmic reticulum resident transmembrane glycoprotein that binds to major histocompatibility complex class I molecules and prevents their departure. The endoplasmic reticulum retention signal of the US3 protein is contained in the luminal domain of the protein [].; PDB: 1IM3_L.
Probab=22.54 E-value=1.4e+02 Score=22.85 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=22.4
Q ss_pred CCCCCCCc-CCCCceEEEEEccccEEEEEecCeEEEEEeecCeEEEEceEEEEEEecCceeccceeE
Q 047759 28 FELPEGLL-PLANVVEVGYVESTGYMWIVQQNKVEHEFKMISKLVSYDTEINGYVDKMKIKKLRGVK 93 (102)
Q Consensus 28 ~gLP~GLL-P~~~V~~y~l~~~tG~f~v~l~~~c~~~f~~~~~~v~Y~~~ItG~l~~g~i~~L~GVk 93 (102)
.|||-|.= |.+++++ .+-..--.|+|.++. |.++ +-++...-.|+|++.+--..+.-++.
T Consensus 15 l~~~~~~p~p~~~~~~-~~~a~~~~ftV~~n~---C~ie--~Gklf~~G~I~GN~t~~~fv~~~v~~ 75 (187)
T PF05963_consen 15 LGLTDGFPRPVPEITE-QLTARRAHFTVEQNR---CYIE--GGKLFMTGRISGNFTKSHFVQVGVVG 75 (187)
T ss_dssp -------------------------EEEEEEE---EEES--SSEEEEEEEEEE--S-EEEEESSS-E
T ss_pred cccccCCCCchHHHHh-hhccCCceEEEEeee---EEEE--CCEEEEEEEEeeeeeeEEEEEEeeee
Confidence 56666653 6656777 453222358886654 7775 45788889999999755444444433
No 123
>PHA00455 hypothetical protein
Probab=22.53 E-value=1.5e+02 Score=19.95 Aligned_cols=45 Identities=13% Similarity=0.307 Sum_probs=34.6
Q ss_pred EEEccccEEEEEecC-eEE------EEEeecCeEEEEceEEEEEEecCceec
Q 047759 44 GYVESTGYMWIVQQN-KVE------HEFKMISKLVSYDTEINGYVDKMKIKK 88 (102)
Q Consensus 44 ~l~~~tG~f~v~l~~-~c~------~~f~~~~~~v~Y~~~ItG~l~~g~i~~ 88 (102)
-||+.+|-|.|+-+. +|. ..++.+|..|.-+..|...|..|+..+
T Consensus 4 hfNksng~Fsvr~~~rs~v~asek~~~~P~iG~~v~LaP~Vh~lITrG~~~~ 55 (85)
T PHA00455 4 HFNKSNGIFSVRRNDRSTVKASEKHAKLPLIGDTVPLAPRVHALITRGKFEK 55 (85)
T ss_pred eEeccCCeEEEecCCchheehhhhccccccccceeEcCceEEEEEecchHHH
Confidence 368899999998753 333 356667888999999999999997654
No 124
>PRK09293 fructose-1,6-bisphosphatase; Provisional
Probab=22.44 E-value=1.4e+02 Score=24.35 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=16.8
Q ss_pred CCceEEEEEccccEEEEEec
Q 047759 38 ANVVEVGYVESTGYMWIVQQ 57 (102)
Q Consensus 38 ~~V~~y~l~~~tG~f~v~l~ 57 (102)
++|..|+||+++|.|.+.-+
T Consensus 170 ~gv~~ftld~~~g~f~l~~~ 189 (327)
T PRK09293 170 DGVHGFTLDPSLGEFVLTHE 189 (327)
T ss_pred CCEEEEEEeCCCCeEEEecC
Confidence 58999999999999976543
No 125
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=22.42 E-value=79 Score=23.43 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=27.3
Q ss_pred HHHHHhCCCCCCCcCCCCceEEEEEccccEEEEEecC
Q 047759 22 VSLLKKFELPEGLLPLANVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 22 ~elL~~~gLP~GLLP~~~V~~y~l~~~tG~f~v~l~~ 58 (102)
.+.-++|-||.|.=| +.|++- |. ++|.++|.-+.
T Consensus 115 R~F~R~y~LP~~vdp-~~V~S~-LS-~dGvLtI~ap~ 148 (173)
T KOG3591|consen 115 RSFVRKYLLPEDVDP-TSVTST-LS-SDGVLTIEAPK 148 (173)
T ss_pred EEEEEEecCCCCCCh-hheEEe-eC-CCceEEEEccC
Confidence 345678999999999 488775 85 68999998765
No 126
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=22.08 E-value=70 Score=20.05 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=12.5
Q ss_pred EceEEEEEEecCceec
Q 047759 73 YDTEINGYVDKMKIKK 88 (102)
Q Consensus 73 Y~~~ItG~l~~g~i~~ 88 (102)
-.+.++|+|+.|+|+.
T Consensus 14 ~g~vv~G~v~~G~i~~ 29 (83)
T cd03698 14 GGTVVSGKVESGSIQK 29 (83)
T ss_pred CCcEEEEEEeeeEEeC
Confidence 3568899999998874
No 127
>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.
Probab=22.00 E-value=90 Score=25.43 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=20.3
Q ss_pred ccEEEeccccchh---hHHHHHHhCCCCCCCcC
Q 047759 7 GGIVKKGHEEGLK---LAVSLLKKFELPEGLLP 36 (102)
Q Consensus 7 ~a~v~~g~~~~~~---~a~elL~~~gLP~GLLP 36 (102)
++.|++.++.+.. ...++|++ |||.|++=
T Consensus 147 N~VIlKps~~~~~~~~~l~~~~~~-glP~g~~~ 178 (450)
T cd07092 147 NTVVLKPSETTPLTTLLLAELAAE-VLPPGVVN 178 (450)
T ss_pred CEEEEECCccchHHHHHHHHHHHh-cCCcccEE
Confidence 4567777765443 45788888 88888764
No 128
>PRK14429 acylphosphatase; Provisional
Probab=21.89 E-value=1.2e+02 Score=19.79 Aligned_cols=20 Identities=20% Similarity=0.043 Sum_probs=17.5
Q ss_pred CceEEEEEccccEEEEEecC
Q 047759 39 NVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 39 ~V~~y~l~~~tG~f~v~l~~ 58 (102)
++++|--|.++|++++...+
T Consensus 29 gl~G~V~N~~dG~Vei~~qG 48 (90)
T PRK14429 29 GVTGYVTNCEDGSVEILAQG 48 (90)
T ss_pred CCEEEEEECCCCeEEEEEEe
Confidence 57889999999999998876
No 129
>PRK14430 acylphosphatase; Provisional
Probab=21.53 E-value=1.1e+02 Score=20.14 Aligned_cols=20 Identities=5% Similarity=-0.050 Sum_probs=17.7
Q ss_pred CceEEEEEccccEEEEEecC
Q 047759 39 NVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 39 ~V~~y~l~~~tG~f~v~l~~ 58 (102)
++++|--|.++|++++..++
T Consensus 31 gl~G~VrN~~dGsVei~~qG 50 (92)
T PRK14430 31 GLGGWVRNRADGTVEVMASG 50 (92)
T ss_pred CCEEEEEECCCCcEEEEEEc
Confidence 57899999999999998876
No 130
>PF00316 FBPase: Fructose-1-6-bisphosphatase; InterPro: IPR000146 This entry represents the fructose-1,6-bisphosphatase (FBPase) class 1 family. FBPase is a critical regulatory enzyme in gluconeogenesis that catalyses the removal of 1-phosphate from fructose 1,6-bis-phosphate to form fructose 6-phosphate [, ]. It is involved in many different metabolic pathways and found in most organisms. FBPase requires metal ions for catalysis (Mg2+ and Mn2+ being preferred) and the enzyme is potently inhibited by Li+. The fold of fructose-1,6-bisphosphatase was noted to be identical to that of inositol-1-phosphatase (IMPase) []. Inositol polyphosphate 1-phosphatase (IPPase), IMPase and FBPase share a sequence motif (Asp-Pro-Ile/Leu-Asp-Gly/Ser-Thr/Ser) which has been shown to bind metal ions and participate in catalysis. This motif is also found in the distantly-related fungal, bacterial and yeast IMPase homologues. It has been suggested that these proteins define an ancient structurally conserved family involved in diverse metabolic pathways, including inositol signalling, gluconeogenesis, sulphate assimilation and possibly quinone metabolism []. This entry also includes sedoheptulose-1,7-bisphosphatase, which is a member of the FBPase class 1 family.; GO: 0042578 phosphoric ester hydrolase activity, 0005975 carbohydrate metabolic process; PDB: 2GQ1_A 2QVR_A 2Q8M_B 2OX3_A 2OWZ_A 3KC0_C 2WBB_A 1FTA_C 2VT5_F 2Y5L_F ....
Probab=21.48 E-value=95 Score=25.39 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=17.8
Q ss_pred CCceEEEEEccccEEEEEecC
Q 047759 38 ANVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 38 ~~V~~y~l~~~tG~f~v~l~~ 58 (102)
.+|..|+||+++|.|.+.-+.
T Consensus 169 ~gV~~FtLD~~~g~F~lt~~~ 189 (324)
T PF00316_consen 169 SGVHGFTLDPSTGEFVLTHPN 189 (324)
T ss_dssp TEEEEEEEETTTTEEEEEEES
T ss_pred CcEeEEEEeCCCCEEEEecCc
Confidence 379999999999999986654
No 131
>cd03368 Ribosomal_S12 S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit interactions. S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. Antibiotics such as streptomycin bind S12 and cause the ribosome to misread the genetic code.
Probab=21.46 E-value=76 Score=22.30 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=14.1
Q ss_pred EecCceeccceeEEEEE
Q 047759 81 VDKMKIKKLRGVKAKEL 97 (102)
Q Consensus 81 l~~g~i~~L~GVk~k~l 97 (102)
|.-|++.+|+||+-+..
T Consensus 80 vrGGrv~DlPGVkykvv 96 (108)
T cd03368 80 VRGGRVKDLPGVRYHIV 96 (108)
T ss_pred EeCCccCCCCCeEEEEE
Confidence 34599999999998875
No 132
>PF11154 DUF2934: Protein of unknown function (DUF2934); InterPro: IPR021327 This bacterial family of proteins has no known function.
Probab=21.41 E-value=90 Score=17.74 Aligned_cols=16 Identities=31% Similarity=0.326 Sum_probs=14.1
Q ss_pred hhhHHHHHHhCCCCCC
Q 047759 18 LKLAVSLLKKFELPEG 33 (102)
Q Consensus 18 ~~~a~elL~~~gLP~G 33 (102)
...||.+=++.|.|.|
T Consensus 9 r~rAY~lwe~~G~p~G 24 (40)
T PF11154_consen 9 RERAYELWEERGRPEG 24 (40)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 4579999999999988
No 133
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=21.24 E-value=84 Score=20.12 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=12.4
Q ss_pred ceEEEEEEecCceec
Q 047759 74 DTEINGYVDKMKIKK 88 (102)
Q Consensus 74 ~~~ItG~l~~g~i~~ 88 (102)
.+.++|+|+.|+|+.
T Consensus 19 g~vv~G~v~~G~i~~ 33 (91)
T cd03693 19 GTVPVGRVETGVLKP 33 (91)
T ss_pred eEEEEEEEecceeec
Confidence 467899999999874
No 134
>cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19. Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).
Probab=21.23 E-value=92 Score=25.43 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=21.1
Q ss_pred ccEEEeccccchhh---HHHHHH----hCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKL---AVSLLK----KFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~---a~elL~----~~gLP~GLLP~ 37 (102)
++.|++..+.+..+ +.++++ +.|||.|++-.
T Consensus 136 N~vVlKps~~tp~~~~~l~~~~~~~l~~aG~P~gvv~~ 173 (406)
T cd07079 136 NAVILRGGSEALHSNRALVEIIQEALEEAGLPEDAVQL 173 (406)
T ss_pred CEEEEeCCchhhhHHHHHHHHHHHHHHHcCCCcccEEE
Confidence 56777777665443 445554 78999999864
No 135
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=21.03 E-value=1e+02 Score=25.19 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=22.3
Q ss_pred ccEEEeccccc---hhhHHHHHHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEG---LKLAVSLLKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~---~~~a~elL~~~gLP~GLLP~ 37 (102)
++.|++..+.. .....++|++.|+|.|++=.
T Consensus 148 N~vilKps~~~p~~~~~l~~~l~~ag~P~g~~~v 181 (453)
T cd07099 148 NAVVLKPSEVTPLVGELLAEAWAAAGPPQGVLQV 181 (453)
T ss_pred CEEEEECCccchHHHHHHHHHHHHcCCCCCeEEE
Confidence 45677766543 33567899999999888753
No 136
>TIGR00407 proA gamma-glutamyl phosphate reductase. The prosite motif begins at residue 332 of the seed alignment although not all of the members of the family exactly obey the motif.
Probab=20.87 E-value=72 Score=26.24 Aligned_cols=31 Identities=26% Similarity=0.522 Sum_probs=21.4
Q ss_pred ccEEEeccccchhhH---HHH----HHhCCCCCCCcCC
Q 047759 7 GGIVKKGHEEGLKLA---VSL----LKKFELPEGLLPL 37 (102)
Q Consensus 7 ~a~v~~g~~~~~~~a---~el----L~~~gLP~GLLP~ 37 (102)
++.|++..+.+..++ .++ |.+.|||.|++=.
T Consensus 130 N~vVlKps~~tp~~~~~l~~~~~~al~eaGlP~gvv~~ 167 (398)
T TIGR00407 130 NAVILRGGKEAVRSNKALVEVIQDALAQTGLPVGAVQL 167 (398)
T ss_pred CeEEECCChhhHHHHHHHHHHHHHHHHHcCCChhHEEE
Confidence 567778777555444 455 5689999998863
No 137
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=20.87 E-value=2e+02 Score=22.02 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=28.3
Q ss_pred chhhHHHHHHhCCCCC------CCcCCCCceEEEEEccccEEEEEec
Q 047759 17 GLKLAVSLLKKFELPE------GLLPLANVVEVGYVESTGYMWIVQQ 57 (102)
Q Consensus 17 ~~~~a~elL~~~gLP~------GLLP~~~V~~y~l~~~tG~f~v~l~ 57 (102)
..+.+.++|+++|+|. |-.+ +.| .|+.+||.+|++.-
T Consensus 116 Nie~a~~~L~~~GI~ivaeDvGG~~g-RkI---~f~~~tG~v~vk~~ 158 (199)
T PRK13491 116 NAAFARRYLRDEGIRCTAHSLGGNRA-RRI---RFWPKTGRVQQMFL 158 (199)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCCCC-cEE---EEECCCCEEEEEEc
Confidence 4457899999999993 6555 344 57789999999753
No 138
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=20.83 E-value=82 Score=20.48 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=19.4
Q ss_pred ccccEEEeccccchhhHHHHHHhCCCCC
Q 047759 5 KEGGIVKKGHEEGLKLAVSLLKKFELPE 32 (102)
Q Consensus 5 ~~~a~v~~g~~~~~~~a~elL~~~gLP~ 32 (102)
...+-|.+|.....+.+.++.++.|.|.
T Consensus 61 ~i~~iIltg~~~~~~~v~~la~~~~i~v 88 (105)
T PF07085_consen 61 GIACIILTGGLEPSEEVLELAKELGIPV 88 (105)
T ss_dssp TECEEEEETT----HHHHHHHHHHT-EE
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHCCCEE
Confidence 3567889998899999999999999663
No 139
>PF11792 Baculo_LEF5_C: Baculoviridae late expression factor 5 C-terminal domain; InterPro: IPR021758 This C-terminal domain is likely to be a zinc-binding domain.
Probab=20.62 E-value=41 Score=20.02 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=13.2
Q ss_pred EEEEEeecCeEEEEceE
Q 047759 60 VEHEFKMISKLVSYDTE 76 (102)
Q Consensus 60 c~~~f~~~~~~v~Y~~~ 76 (102)
|.|.|..++++.|=..+
T Consensus 13 C~H~f~~~E~Q~RAGDE 29 (43)
T PF11792_consen 13 CKHKFVTIEKQLRAGDE 29 (43)
T ss_pred ceeeeeehhhhhcccch
Confidence 99999988888764443
No 140
>PRK14451 acylphosphatase; Provisional
Probab=20.50 E-value=1.1e+02 Score=20.03 Aligned_cols=20 Identities=5% Similarity=-0.090 Sum_probs=17.8
Q ss_pred CceEEEEEccccEEEEEecC
Q 047759 39 NVVEVGYVESTGYMWIVQQN 58 (102)
Q Consensus 39 ~V~~y~l~~~tG~f~v~l~~ 58 (102)
++++|.-|.++|++++.+.+
T Consensus 30 gl~G~V~N~~dG~Vei~~qG 49 (89)
T PRK14451 30 MISGWARNLADGRVEVFACG 49 (89)
T ss_pred CCEEEEEECCCCCEEEEEEE
Confidence 68899999999999998875
No 141
>PLN02262 fructose-1,6-bisphosphatase
Probab=20.18 E-value=1.1e+02 Score=25.27 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=17.1
Q ss_pred CCceEEEEEccccEEEEEec
Q 047759 38 ANVVEVGYVESTGYMWIVQQ 57 (102)
Q Consensus 38 ~~V~~y~l~~~tG~f~v~l~ 57 (102)
.+|.+|+||+++|.|.+..+
T Consensus 182 ~gv~~Ftld~~~gef~lt~~ 201 (340)
T PLN02262 182 GGVNGFTLDPSLGEFILTHP 201 (340)
T ss_pred CCeeEEEEcCCCCEEEEeCC
Confidence 48999999999999987644
No 142
>PF13761 DUF4166: Domain of unknown function (DUF4166)
Probab=20.10 E-value=3.2e+02 Score=19.60 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=27.1
Q ss_pred CCCCCCCcCCCCceEEEEEccccEEEEEecCeEEEEEeecCeEEEEceE
Q 047759 28 FELPEGLLPLANVVEVGYVESTGYMWIVQQNKVEHEFKMISKLVSYDTE 76 (102)
Q Consensus 28 ~gLP~GLLP~~~V~~y~l~~~tG~f~v~l~~~c~~~f~~~~~~v~Y~~~ 76 (102)
..||+=|.|. ++.++.- ++|.|.+... +..+..+..++|.-.
T Consensus 119 iplP~~L~p~--~~~~E~~-d~~~f~f~V~----v~~Pl~G~l~~Y~G~ 160 (162)
T PF13761_consen 119 IPLPRWLTPR--AEAREHY-DDGRFRFDVE----VSNPLLGPLFRYRGW 160 (162)
T ss_pred ccCCcccCCc--EEEEEEE-eCCEEEEEEE----EECCceeeEEEEEEE
Confidence 7899999994 4445543 2488766543 333445788888644
Done!