BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047764
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 110/286 (38%), Gaps = 23/286 (8%)
Query: 30 PLDVVRTRFQVNDG-----RVSNLPTYKNTAHAILTISRLEGLRGLYAGFSPAVLGSTLS 84
PLD + R Q+ R + Y+ ILT+ R EG R LY G +
Sbjct: 21 PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSF 80
Query: 85 WGLYFFFYGRAKQRYSKNGKEKLNPGHHLASSAEAGALVCLCTNPVWLVKTRLQLQTPLH 144
+ Y KQ Y+K G E G L + + GAL P +VK R Q Q
Sbjct: 81 ASVRIGLYDSVKQFYTK-GSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG 139
Query: 145 QTRLYSGLYDALTTIMKEEGWSGLYKGIVPSLFLQVSHGAIQFTVYEELRKVIVDFKSKR 204
R Y +A TI +EEG GL+KG P++ + Y+ ++ ++
Sbjct: 140 GGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLL------ 193
Query: 205 RKQNPDRANNLLNSADYAILGG-SSKIAAMLLTYPFQVIRARLQQRPSGNGIPRYVDSWH 263
+AN + + + ++ P V++ R G +Y + H
Sbjct: 194 ------KANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALG----QYHSAGH 243
Query: 264 VIRETARFEGLRGFYRGITPNLLKNVPASSITFIVYENVLNFLKKA 309
R EG R FY+G P+ L+ + + F+ YE + L A
Sbjct: 244 CALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 93/200 (46%), Gaps = 21/200 (10%)
Query: 119 AGALVC---LCTNPVWLVKTRLQLQTPLH------QTRLYSGLYDALTTIMKEEGWSGLY 169
AG C L T P+ K RLQ+Q + Y G+ + T+++ EG LY
Sbjct: 8 AGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLY 67
Query: 170 KGIVPSLFLQVSHGAIQFTVYEELRKVIVDFKSKRRKQNPDRANNLLNSADYAILGGSSK 229
G+V L Q+S +++ +Y+ +++ F +K ++ + LL G ++
Sbjct: 68 NGLVAGLQRQMSFASVRIGLYDSVKQ----FYTKG-SEHAGIGSRLLA-------GSTTG 115
Query: 230 IAAMLLTYPFQVIRARLQQRPSGNGIPRYVDSWHVIRETARFEGLRGFYRGITPNLLKNV 289
A+ + P V++ R Q + G RY + + AR EG+RG ++G +PN+ +N
Sbjct: 116 ALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNA 175
Query: 290 PASSITFIVYENVLNFLKKA 309
+ + Y+ + + L KA
Sbjct: 176 IVNCAELVTYDLIKDTLLKA 195
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 125/291 (42%), Gaps = 30/291 (10%)
Query: 28 MHPLDVVRTRFQVNDG--RVSNLPTYKNTAHAILTISRLEGLRGLYAGFSPAVLGSTLSW 85
+ P++ V+ QV ++S YK ++ I + +G + G V+ +
Sbjct: 25 VAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84
Query: 86 GLYFFFYGRAKQRYSKNGKEKLNP-----GHHLASSAEAGALVCLCTNPVWLVKTRLQLQ 140
L F F + KQ + G ++ +LAS AGA P+ +TRL
Sbjct: 85 ALNFAFKDKYKQIFL-GGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD 143
Query: 141 TPLHQT-RLYSGLYDALTTIMKEEGWSGLYKGIVPSLFLQVSHGAIQFTVYEELRKVIVD 199
R ++GL + +T I K +G GLY+G S+ + + A F VY+ + ++ D
Sbjct: 144 VGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203
Query: 200 FKSKRRKQNPDRANNLLNSADYAILGGSSKIAAMLLTYPFQVIRARLQQRPSGNGIPRY- 258
P + +++ ++ + A L++YPF +R R+ + G
Sbjct: 204 ---------PKNVHIIVSW----MIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMY 250
Query: 259 ---VDSWHVIRETARFEGLRGFYRGITPNLLKNVPASSITFIVYENVLNFL 306
VD W R+ A+ EG + F++G N+L+ + + ++Y+ + F+
Sbjct: 251 TGTVDCW---RKIAKDEGPKAFFKGAWSNVLRGM-GGAFVLVLYDEIKKFV 297
>pdb|1AHA|A Chain A, The N-Glycosidase Mechanism Of Ribosome-Inactivating
Proteins Implied By Crystal Structures Of
Alpha-Momorcharin
pdb|1AHB|A Chain A, The N-Glycosidase Mechanism Of Ribosome-Inactivating
Proteins Implied By Crystal Structures Of
Alpha-Momorcharin
pdb|1AHC|A Chain A, The N-Glycosidase Mechanism Of Ribosome-Inactivating
Proteins Implied By Crystal Structures Of
Alpha-Momorcharin
Length = 246
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 112 HLASSAEAGALVCLCTNPVWLVKTRLQLQTPLHQTRLYSGLYDALTTIMKEEGWSGLYKG 171
H S+A AGAL+ L + + Q Q R Y +L TI E WSGL K
Sbjct: 141 HYDSTAAAGALLVLIQTTAEAARFKYIEQQ--IQERAYRDEVPSLATISLENSWSGLSKQ 198
Query: 172 I 172
I
Sbjct: 199 I 199
>pdb|1F8Q|A Chain A, Crystal Structure Of Alpha-momorcharin In
Acetonitrile-water Mixture
pdb|1MRI|A Chain A, Studies On Crystal Structures Active Center Geometry And
Depurine Mechanism Of Two Ribosome-Inactivating Proteins
pdb|1MRH|A Chain A, Studies On Crystal Structures Active Center Geometry And
Depurine Mechanism Of Two Ribosome-inactivating Proteins
Length = 263
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 112 HLASSAEAGALVCLCTNPVWLVKTRLQLQTPLHQTRLYSGLYDALTTIMKEEGWSGLYKG 171
H S+A AGAL+ L + + Q Q R Y +L TI E WSGL K
Sbjct: 141 HYDSTAAAGALLVLIQTTAEAARFKYIEQQ--IQERAYRDEVPSLATISLENSWSGLSKQ 198
Query: 172 I 172
I
Sbjct: 199 I 199
>pdb|1MRG|A Chain A, Studies On Crystal Structures Active Center Geometry And
Depurine Mechanism Of Two Ribosome-Inactivating Proteins
Length = 263
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 112 HLASSAEAGALVCLCTNPVWLVKTRLQLQTPLHQTRLYSGLYDALTTIMKEEGWSGLYKG 171
H S+A AGAL+ L + + Q Q R Y +L TI E WSGL K
Sbjct: 141 HYDSTAAAGALLVLIQTTAEAARFKYIEQQ--IQERAYRDEVPSLATISLENSWSGLSKQ 198
Query: 172 I 172
I
Sbjct: 199 I 199
>pdb|1MOM|A Chain A, Crystal Structure Of Momordin, A Type I Ribosome
Inactivating Protein From The Seeds Of Momordica
Charantia
Length = 246
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 112 HLASSAEAGALVCLCTNPVWLVKTRLQLQTPLHQTRLYSGLYDALTTIMKEEGWSGLYKG 171
H S+A AGAL+ L + + Q Q R Y +L TI E WSGL K
Sbjct: 141 HYDSTAAAGALLVLIQTTAEAARFKYIEQQ--IQERAYRDEVPSLATISLENSWSGLSKQ 198
Query: 172 I 172
I
Sbjct: 199 I 199
>pdb|3S1W|A Chain A, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
pdb|3S1W|B Chain B, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
pdb|3S1W|C Chain C, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
pdb|3S1W|D Chain D, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
pdb|3S1W|E Chain E, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
Length = 223
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 227 SSKIAAMLLTYPFQVIRARLQQRPSGNGIPRYVDSW 262
S+ I A ++T PF V+++ ++ + G+ ++++ W
Sbjct: 177 SAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDW 212
>pdb|3S0C|A Chain A, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S0C|B Chain B, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S0C|C Chain C, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S0C|D Chain D, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S0C|E Chain E, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S1U|A Chain A, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1U|B Chain B, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1U|C Chain C, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1U|D Chain D, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1U|E Chain E, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1V|A Chain A, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1V|B Chain B, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1V|C Chain C, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1V|D Chain D, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1V|E Chain E, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1X|A Chain A, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
pdb|3S1X|B Chain B, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
pdb|3S1X|C Chain C, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
pdb|3S1X|D Chain D, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
pdb|3S1X|E Chain E, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
Length = 223
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 227 SSKIAAMLLTYPFQVIRARLQQRPSGNGIPRYVDSW 262
S+ I A ++T PF V+++ ++ + G+ ++++ W
Sbjct: 177 SAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDW 212
>pdb|3EEQ|A Chain A, Crystal Structure Of A Putative Cobalamin Biosynthesis
Protein G Homolog From Sulfolobus Solfataricus
pdb|3EEQ|B Chain B, Crystal Structure Of A Putative Cobalamin Biosynthesis
Protein G Homolog From Sulfolobus Solfataricus
Length = 336
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 162 EEGWSGLYKGIVPSLFLQVSHGAIQFTVYEELRKVIVDFKSKRRKQNPDRANNLLN 217
EE G+YK ++ L L+ I ++ EE++K+ +F + R N + NN +N
Sbjct: 223 EEIRDGIYK-VLERLNLKRERIGIIASIREEVKKIADEFNVRFRLVNEEEINNFMN 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,141,889
Number of Sequences: 62578
Number of extensions: 367189
Number of successful extensions: 670
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 11
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)