Query 047764
Match_columns 313
No_of_seqs 150 out of 1958
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 04:25:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 4.6E-57 1.6E-61 390.9 25.2 281 12-308 3-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 6.7E-56 2.3E-60 382.8 28.5 285 8-306 5-297 (297)
3 2lck_A Mitochondrial uncouplin 100.0 2E-35 6.9E-40 255.2 18.7 190 8-202 102-291 (303)
4 1okc_A ADP, ATP carrier protei 100.0 1.5E-35 5.3E-40 255.4 16.9 194 108-308 6-203 (297)
5 3tgu_G UQCRQ, mitochondrial ub 64.4 4.1 0.00014 26.6 2.2 41 273-313 33-73 (81)
6 1pp9_G Ubiquinol-cytochrome C 54.0 8 0.00027 25.2 2.3 42 272-313 32-73 (81)
7 3cx5_H Cytochrome B-C1 complex 42.4 25 0.00085 23.6 3.3 40 272-311 42-81 (93)
8 4b19_A PEPA1; toxin, toxin apo 22.5 15 0.00051 18.7 -0.3 23 219-241 4-26 (30)
9 2l5r_A Antimicrobial peptide a 18.0 71 0.0024 14.9 1.5 19 59-78 3-21 (26)
10 2acm_A Mucin-1; auto-catalytic 17.4 18 0.00062 21.7 -0.8 20 52-71 40-59 (66)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.6e-57 Score=390.91 Aligned_cols=281 Identities=23% Similarity=0.345 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHhccCCCCC-----CCCCcccHHHHHHHHHHhhhhhhhhcCchhHHhhhhhhHH
Q 047764 12 ENATAGAIAGFATVAAMHPLDVVRTRFQVNDGRVS-----NLPTYKNTAHAILTISRLEGLRGLYAGFSPAVLGSTLSWG 86 (313)
Q Consensus 12 ~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~~-----~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~l~~~~~~~ 86 (313)
.++++|++||+++.++++|||++|+|+|++..... ....|++.++++++++++||++|||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999875322 2346899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCChHHHHHHHhHHHHHHHHhcchHHHHHHHHhhcCCCCCCcCCCcHHHHHHHHHHhhcHh
Q 047764 87 LYFFFYGRAKQRYSKNGKEKLNPGHHLASSAEAGALVCLCTNPVWLVKTRLQLQTPLHQTRLYSGLYDALTTIMKEEGWS 166 (313)
Q Consensus 87 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~a~~~~~~v~~Pl~~ik~r~q~~~~~~~~~~~~~~~~~~~~i~~~~G~~ 166 (313)
++|.+||.+++.+..... ..+....+++|++|++++.++++|+|+||+|+|++........|.+.++++++++++||++
T Consensus 83 i~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~ 161 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIR 161 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChh
Confidence 999999999998865422 3477889999999999999999999999999999865444567899999999999999999
Q ss_pred hhhcchhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhccCCCcchhhccchhHHHHHhhHHHHHHHhhcCcHHHHHHHH
Q 047764 167 GLYKGIVPSLFLQVSHGAIQFTVYEELRKVIVDFKSKRRKQNPDRANNLLNSADYAILGGSSKIAAMLLTYPFQVIRARL 246 (313)
Q Consensus 167 ~lyrG~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pld~i~~r~ 246 (313)
+||||+.|++++.+++.+++|.+||.+++.+..... ...+....+++|+++|++++++++|+|+||+||
T Consensus 162 glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~-----------~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrl 230 (303)
T 2lck_A 162 GLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL-----------MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRY 230 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS-----------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----------CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 999999999999999999999999999998653221 122556789999999999999999999999999
Q ss_pred hcCCCCCCCCcccchHHHHHHHHHhhccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 047764 247 QQRPSGNGIPRYVDSWHVIRETARFEGLRGFYRGITPNLLKNVPASSITFIVYENVLNFLKK 308 (313)
Q Consensus 247 q~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 308 (313)
|.+.. ..|.++++|+++++++||++|||||+.++++|.+|..+++|.+||.+|+++.+
T Consensus 231 q~~~~----~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 231 MNSAL----GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp TTCCS----SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred Hhccc----cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99865 35899999999999999999999999999999999999999999999987743
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=6.7e-56 Score=382.77 Aligned_cols=285 Identities=23% Similarity=0.355 Sum_probs=242.8
Q ss_pred chhHHHHHHHHHHHHHHHhhhccHHHHHHHHhccCCCC--CCCCCcccHHHHHHHHHHhhhhhhhhcCchhHHhhhhhhH
Q 047764 8 QWQWENATAGAIAGFATVAAMHPLDVVRTRFQVNDGRV--SNLPTYKNTAHAILTISRLEGLRGLYAGFSPAVLGSTLSW 85 (313)
Q Consensus 8 ~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~--~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~l~~~~~~ 85 (313)
...+.++++|++||+++.++++|||++|+|+|++.... .....|++.++++++++++||++|||||+.+++++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 45678999999999999999999999999999986422 1234689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc-CCCCC---ChHHHHHHHhHHHHHHHHhcchHHHHHHHHhhcCCC-CCCcCCCcHHHHHHHHH
Q 047764 86 GLYFFFYGRAKQRYSKN-GKEKL---NPGHHLASSAEAGALVCLCTNPVWLVKTRLQLQTPL-HQTRLYSGLYDALTTIM 160 (313)
Q Consensus 86 ~~~~~~~~~~~~~l~~~-~~~~~---~~~~~~~~g~~a~~~~~~v~~Pl~~ik~r~q~~~~~-~~~~~~~~~~~~~~~i~ 160 (313)
+++|.+||.+++.+... +.... +....+++|++|++++.++++|+|+||+|+|++... .....|.+.++++++++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999954332 22211 235678999999999999999999999999997532 23457899999999999
Q ss_pred HhhcHhhhhcchhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhccCCCcchhhccchhHHHHHhhHHHHHHHhhcCcHH
Q 047764 161 KEEGWSGLYKGIVPSLFLQVSHGAIQFTVYEELRKVIVDFKSKRRKQNPDRANNLLNSADYAILGGSSKIAAMLLTYPFQ 240 (313)
Q Consensus 161 ~~~G~~~lyrG~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pld 240 (313)
++||+++||||+.|++++.+++.+++|.+||.+++.+... ...+....+++|+++|++++++++|+|
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~-------------~~~~~~~~~~~g~~ag~~a~~~t~P~d 231 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP-------------KNVHIIVSWMIAQTVTAVAGLVSYPFD 231 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG-------------GCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC-------------CCccHHHHHHHHHHHHHHHHHhcChHH
Confidence 9999999999999999999999999999999999865321 112556778999999999999999999
Q ss_pred HHHHHHhcCCCCC-CCCcccchHHHHHHHHHhhccccccccchhhhhhhhhhhHHHHHHHHHHHHHH
Q 047764 241 VIRARLQQRPSGN-GIPRYVDSWHVIRETARFEGLRGFYRGITPNLLKNVPASSITFIVYENVLNFL 306 (313)
Q Consensus 241 ~i~~r~q~~~~~~-~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~ 306 (313)
+||+|||.+.... ....|.++++|+++|+++||++|||||+.++++|. +..++.|.+||.+|+++
T Consensus 232 vvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 232 TVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 9999999886432 23468999999999999999999999999999996 57899999999998764
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2e-35 Score=255.24 Aligned_cols=190 Identities=28% Similarity=0.368 Sum_probs=170.8
Q ss_pred chhHHHHHHHHHHHHHHHhhhccHHHHHHHHhccCCCCCCCCCcccHHHHHHHHHHhhhhhhhhcCchhHHhhhhhhHHH
Q 047764 8 QWQWENATAGAIAGFATVAAMHPLDVVRTRFQVNDGRVSNLPTYKNTAHAILTISRLEGLRGLYAGFSPAVLGSTLSWGL 87 (313)
Q Consensus 8 ~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~l~~~~~~~~ 87 (313)
...+..+++|++||+++.++++|+|++|+|+|++... .....|++.++++++|+++||++|||||+.+.+++.++..++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 180 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA-GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCA 180 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC-CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc-CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHH
Confidence 4567899999999999999999999999999998643 223478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCChHHHHHHHhHHHHHHHHhcchHHHHHHHHhhcCCCCCCcCCCcHHHHHHHHHHhhcHhh
Q 047764 88 YFFFYGRAKQRYSKNGKEKLNPGHHLASSAEAGALVCLCTNPVWLVKTRLQLQTPLHQTRLYSGLYDALTTIMKEEGWSG 167 (313)
Q Consensus 88 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~a~~~~~~v~~Pl~~ik~r~q~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ 167 (313)
+|.+||.+++.+........+....+++|++|+++++++++|+|+||+|+|.+.. ..|.+.++++++++++||+++
T Consensus 181 ~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~----~~y~~~~~~~~~i~~~eG~~g 256 (303)
T 2lck_A 181 ELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL----GQYHSAGHCALTMLRKEGPRA 256 (303)
T ss_dssp HHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----SSCCSHHHHHHHHHHSSCTHH
T ss_pred HHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc----cccCCHHHHHHHHHHHcChHH
Confidence 9999999999887654434467788999999999999999999999999998742 358999999999999999999
Q ss_pred hhcchhHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Q 047764 168 LYKGIVPSLFLQVSHGAIQFTVYEELRKVIVDFKS 202 (313)
Q Consensus 168 lyrG~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 202 (313)
||||+.|+++|.++..++.|.+||.+++.+....+
T Consensus 257 lyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~~ 291 (303)
T 2lck_A 257 FYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQ 291 (303)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred hhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999987755443
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.5e-35 Score=255.42 Aligned_cols=194 Identities=19% Similarity=0.317 Sum_probs=166.4
Q ss_pred ChHHHHHHHhHHHHHHHHhcchHHHHHHHHhhcCCC---CCCcCCCcHHHHHHHHHHhhcHhhhhcchhHHHHHHhhhhh
Q 047764 108 NPGHHLASSAEAGALVCLCTNPVWLVKTRLQLQTPL---HQTRLYSGLYDALTTIMKEEGWSGLYKGIVPSLFLQVSHGA 184 (313)
Q Consensus 108 ~~~~~~~~g~~a~~~~~~v~~Pl~~ik~r~q~~~~~---~~~~~~~~~~~~~~~i~~~~G~~~lyrG~~~~~l~~~~~~~ 184 (313)
+....+++|++|++++.++++|+|+||+|+|++... .....|++.++++++++++||+++||||+.+.+++.+++.+
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 456789999999999999999999999999998532 12356899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhccCCCcchhhccchhHHHHHhhHHHHHHHhhcCcHHHHHHHHhcCCCC-CCCCcccchHH
Q 047764 185 IQFTVYEELRKVIVDFKSKRRKQNPDRANNLLNSADYAILGGSSKIAAMLLTYPFQVIRARLQQRPSG-NGIPRYVDSWH 263 (313)
Q Consensus 185 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pld~i~~r~q~~~~~-~~~~~~~~~~~ 263 (313)
++|.+||.+++.+....+.+ .+........+++|+++|++++++++|+|+||+|+|.+... .....|.++++
T Consensus 86 ~~f~~ye~~k~~~~~~~~~~-------~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~ 158 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVDRH-------KQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGN 158 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCTT-------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHH
T ss_pred HHHHHHHHHHHHhccccCcc-------cchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHH
Confidence 99999999999654321110 01112456788999999999999999999999999998642 22356899999
Q ss_pred HHHHHHHhhccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 047764 264 VIRETARFEGLRGFYRGITPNLLKNVPASSITFIVYENVLNFLKK 308 (313)
Q Consensus 264 ~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 308 (313)
++++++++||++|||||+.++++|.+|..++.|.+||.+|+.+.+
T Consensus 159 ~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 159 CITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred HHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999997754
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=64.40 E-value=4.1 Score=26.63 Aligned_cols=41 Identities=15% Similarity=0.325 Sum_probs=32.2
Q ss_pred ccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhC
Q 047764 273 GLRGFYRGITPNLLKNVPASSITFIVYENVLNFLKKARKTN 313 (313)
Q Consensus 273 G~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~ 313 (313)
|+.+.+|-+.-+++.++|..++...+|++..+..+..+.+|
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKn 73 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKN 73 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44455555677888999999999999999999888766543
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=54.03 E-value=8 Score=25.23 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=33.9
Q ss_pred hccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhC
Q 047764 272 EGLRGFYRGITPNLLKNVPASSITFIVYENVLNFLKKARKTN 313 (313)
Q Consensus 272 ~G~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~ 313 (313)
+|+...+|-+.-+++.++|..+++..+|+...+..+..+.+|
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKn 73 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKN 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCC
Confidence 356666777788888999999999999999999887766543
No 7
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=42.37 E-value=25 Score=23.55 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=33.6
Q ss_pred hccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 047764 272 EGLRGFYRGITPNLLKNVPASSITFIVYENVLNFLKKARK 311 (313)
Q Consensus 272 ~G~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~ 311 (313)
+|+.+.+|-+.-+++.++|..++...+|+..++..+..+.
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l~~ 81 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLYS 81 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHHhc
Confidence 4677778888888889999999999999999988876553
No 8
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=22.49 E-value=15 Score=18.74 Aligned_cols=23 Identities=17% Similarity=-0.037 Sum_probs=17.1
Q ss_pred hHHHHHhhHHHHHHHhhcCcHHH
Q 047764 219 ADYAILGGSSKIAAMLLTYPFQV 241 (313)
Q Consensus 219 ~~~~~~g~~ag~~~~~~~~Pld~ 241 (313)
+.++++-+++|++-++++|-|+.
T Consensus 4 fv~iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 4 FVHIIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp GTSSTTTTHHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHHHHHHHh
Confidence 34456667888999999888764
No 9
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=17.96 E-value=71 Score=14.93 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=11.9
Q ss_pred HHHHHhhhhhhhhcCchhHH
Q 047764 59 LTISRLEGLRGLYAGFSPAV 78 (313)
Q Consensus 59 ~~i~~~~G~~gly~G~~~~~ 78 (313)
++|++ -|+.+|.+|+.+..
T Consensus 3 keifk-aglgslvkgiaahv 21 (26)
T 2l5r_A 3 KEIFK-AGLGSLVKGIAAHV 21 (26)
T ss_dssp HHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHH-HhHHHHHHHHHHHH
Confidence 44554 47777777776554
No 10
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=17.42 E-value=18 Score=21.73 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=16.3
Q ss_pred ccHHHHHHHHHHhhhhhhhh
Q 047764 52 KNTAHAILTISRLEGLRGLY 71 (313)
Q Consensus 52 ~~~~~~~~~i~~~~G~~gly 71 (313)
+++.+.+..||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 45778888899999988876
Done!