BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047765
         (72 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9D0U1|DTWD2_MOUSE DTW domain-containing protein 2 OS=Mus musculus GN=Dtwd2 PE=2 SV=1
          Length = 298

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 29/52 (55%)

Query: 16  QRRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLT 67
           +RR  CG C RPQ VCLC  LP  P+  +T + II HP E    L T  LL 
Sbjct: 64  ERRPECGRCSRPQKVCLCPYLPVRPLQISTHLYIIQHPAEESRVLRTVPLLA 115


>sp|Q4R7M4|DTWD2_MACFA DTW domain-containing protein 2 OS=Macaca fascicularis GN=DTWD2
           PE=2 SV=1
          Length = 298

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 30/54 (55%)

Query: 14  PPQRRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLT 67
           P +RR  C  C RPQ VCLC  LP  P+  +T + II HP E +  L T  LL 
Sbjct: 62  PAKRRPECSRCSRPQKVCLCPFLPAHPLHISTHLYIIQHPAEENKVLRTVPLLA 115


>sp|Q8NBA8|DTWD2_HUMAN DTW domain-containing protein 2 OS=Homo sapiens GN=DTWD2 PE=2 SV=1
          Length = 298

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 30/54 (55%)

Query: 14  PPQRRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLT 67
           P +RR  C  C RPQ VCLC  LP  P+  +T + II HP E +  L T  LL 
Sbjct: 62  PAERRPECTRCSRPQKVCLCPFLPAHPLHISTHLYIIQHPAEENKVLRTVPLLA 115


>sp|Q47319|YFIP_ECOLI DTW domain-containing protein YfiP OS=Escherichia coli (strain
          K12) GN=yfiP PE=3 SV=2
          Length = 232

 Score = 29.3 bits (64), Expect = 6.9,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 17 RRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLL 66
          R R C  C  P+ +CLC  +  TP    +R  ++    E     NT RL+
Sbjct: 27 RVRRCQRCLLPEKLCLCSTI--TPAQAKSRFCLLMFDTEPMKPSNTGRLI 74


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.133    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,683,122
Number of Sequences: 539616
Number of extensions: 982290
Number of successful extensions: 2299
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2296
Number of HSP's gapped (non-prelim): 4
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)