Query 047765
Match_columns 72
No_of_seqs 112 out of 440
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 02:54:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03942 DTW: DTW domain; Int 99.8 5.6E-19 1.2E-23 121.9 4.9 54 17-72 1-54 (203)
2 COG3148 Uncharacterized conser 99.7 9.2E-18 2E-22 120.5 3.7 57 14-72 23-79 (231)
3 KOG4382 Uncharacterized conser 99.6 1.5E-15 3.2E-20 110.7 5.0 62 11-72 13-74 (276)
4 PRK00939 translation initiatio 84.0 1.1 2.3E-05 28.7 2.4 19 19-37 2-20 (99)
5 PRK06824 translation initiatio 73.0 3.5 7.7E-05 27.2 2.4 21 17-37 15-35 (118)
6 KOG3795 Uncharacterized conser 68.6 8.2 0.00018 28.0 3.6 46 13-58 10-63 (230)
7 COG0199 RpsN Ribosomal protein 37.3 30 0.00066 20.4 1.9 19 11-29 14-32 (61)
8 PF11290 DUF3090: Protein of u 33.5 27 0.00059 24.6 1.4 14 16-29 152-165 (171)
9 TIGR03847 conserved hypothetic 33.0 29 0.00063 24.6 1.5 14 16-29 154-167 (177)
10 PF13248 zf-ribbon_3: zinc-rib 29.2 36 0.00079 16.2 1.1 10 18-27 16-25 (26)
11 PF13240 zinc_ribbon_2: zinc-r 27.2 43 0.00093 15.8 1.1 11 17-27 12-22 (23)
12 COG1998 RPS31 Ribosomal protei 26.6 33 0.00072 19.8 0.8 10 16-25 17-26 (51)
13 PRK06393 rpoE DNA-directed RNA 21.8 1.2E+02 0.0027 18.0 2.7 35 19-56 6-44 (64)
14 PF10571 UPF0547: Uncharacteri 21.6 63 0.0014 15.8 1.2 13 15-27 11-23 (26)
15 PF13824 zf-Mss51: Zinc-finger 20.3 56 0.0012 19.0 0.9 14 16-29 12-25 (55)
No 1
>PF03942 DTW: DTW domain; InterPro: IPR005636 This presumed domain is found in bacterial and eukaryotic proteins. Its function is unknown. The domain contains multiple conserved motifs including a DTXW motif that this domain has been named after.
Probab=99.76 E-value=5.6e-19 Score=121.86 Aligned_cols=54 Identities=39% Similarity=0.836 Sum_probs=51.4
Q ss_pred CCcCCCCCCCCCCceeeCCcCCCCCCCcceEEEEeCCCcccCCCChHHHHHhhhcC
Q 047765 17 RRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSVRH 72 (72)
Q Consensus 17 ~r~~C~~C~~p~~~ClC~~ip~~~l~~~~~v~ILqHp~E~~r~~nT~rLl~~~L~~ 72 (72)
||.+|++|++|..+|+|+++| +++++++|+|||||+|++|++|||+|+++++++
T Consensus 1 rr~~C~~C~~~~~~C~C~~~~--~v~~~~~v~iL~Hp~E~~~~~nTg~l~~~~l~~ 54 (203)
T PF03942_consen 1 RRFRCPRCWRPLSLCICSLIP--PVELPTRVVILQHPKERKRASNTGRLLALCLPD 54 (203)
T ss_pred CCCcCcCCCCccccCCCcCCC--CCCCCcEEEEEECchhhhcccChHHHHHHhhcc
Confidence 689999999999999999998 999999999999999999999999999998863
No 2
>COG3148 Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=9.2e-18 Score=120.50 Aligned_cols=57 Identities=30% Similarity=0.636 Sum_probs=54.0
Q ss_pred CCcCCcCCCCCCCCCCceeeCCcCCCCCCCcceEEEEeCCCcccCCCChHHHHHhhhcC
Q 047765 14 PPQRRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSVRH 72 (72)
Q Consensus 14 ~~~~r~~C~~C~~p~~~ClC~~ip~~~l~~~~~v~ILqHp~E~~r~~nT~rLl~~~L~~ 72 (72)
.+.+..+|.+|+++.+.|+|++|| +++.+++|+||||++|+.|++||||||+++|++
T Consensus 23 rg~~~~rC~~C~l~~~~CLCa~ip--~~ea~~~~~Ll~hdtE~~kpsNTgrliad~l~d 79 (231)
T COG3148 23 RGNRVRRCQRCLLPEKHCLCATIP--PLEARSRFCLLMHDTEPMKPSNTGRLIADILAD 79 (231)
T ss_pred cCCcchhhhhhCChhhhccccCcC--CcccceeEEEEecCccccCCCcchhHHHHhhhh
Confidence 356789999999999999999999 999999999999999999999999999999975
No 3
>KOG4382 consensus Uncharacterized conserved protein, contains DTW domain [Function unknown]
Probab=99.59 E-value=1.5e-15 Score=110.67 Aligned_cols=62 Identities=37% Similarity=0.745 Sum_probs=58.4
Q ss_pred CCCCCcCCcCCCCCCCCCCceeeCCcCCCCCCCcceEEEEeCCCcccCCCChHHHHHhhhcC
Q 047765 11 NSPPPQRRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHHKLNTARLLTKSVRH 72 (72)
Q Consensus 11 ~~~~~~~r~~C~~C~~p~~~ClC~~ip~~~l~~~~~v~ILqHp~E~~r~~nT~rLl~~~L~~ 72 (72)
....+.+|+.|+.|.||..+|||..+|.+.+++++.|+|||||.|.+|++||.+|+.+.|.+
T Consensus 13 t~d~~~rR~~C~~CdrP~~lClC~~lp~p~~~~~~~I~ILqHp~E~kh~LnTt~il~lgL~n 74 (276)
T KOG4382|consen 13 TLDMGTRRPTCPSCDRPSQLCLCKKLPSPCFDNQVSITILQHPLERKHALNTTRILRLGLKN 74 (276)
T ss_pred ccCCCcCCCCCCccCCCceeEEecCCCCCCcCCcceEEEeeCchHhhhhcchhhHHHhcccc
Confidence 45678999999999999999999999999999999999999999999999999999999864
No 4
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=84.00 E-value=1.1 Score=28.66 Aligned_cols=19 Identities=32% Similarity=1.013 Sum_probs=18.0
Q ss_pred cCCCCCCCCCCceeeCCcC
Q 047765 19 RICGNCDRPQAVCLCHVLP 37 (72)
Q Consensus 19 ~~C~~C~~p~~~ClC~~ip 37 (72)
+.|+.|+.+...|.|..++
T Consensus 2 ~~c~~c~~~~~~c~c~~~~ 20 (99)
T PRK00939 2 EICPVCGLPKELCVCEEVA 20 (99)
T ss_pred CcCccCCCCHHHccCcccC
Confidence 5799999999999999998
No 5
>PRK06824 translation initiation factor Sui1; Validated
Probab=72.99 E-value=3.5 Score=27.23 Aligned_cols=21 Identities=33% Similarity=0.950 Sum_probs=17.7
Q ss_pred CCcCCCCCCCCCCceeeCCcC
Q 047765 17 RRRICGNCDRPQAVCLCHVLP 37 (72)
Q Consensus 17 ~r~~C~~C~~p~~~ClC~~ip 37 (72)
.-..|+.|+.|...|.|....
T Consensus 15 ~g~~c~~cg~~~~~C~C~~~~ 35 (118)
T PRK06824 15 HGRHCPDCGQPVAACICKQAA 35 (118)
T ss_pred CCccCcccCCchhhhcccccc
Confidence 346899999999999998654
No 6
>KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.64 E-value=8.2 Score=27.97 Aligned_cols=46 Identities=24% Similarity=0.497 Sum_probs=31.1
Q ss_pred CCCcCCcCCCCCCCCCC-ceeeCCcCCC-------CCCCcceEEEEeCCCcccC
Q 047765 13 PPPQRRRICGNCDRPQA-VCLCHVLPTT-------PITTNTRILIIHHPHEAHH 58 (72)
Q Consensus 13 ~~~~~r~~C~~C~~p~~-~ClC~~ip~~-------~l~~~~~v~ILqHp~E~~r 58 (72)
.+-+.|..|..|+.... .|+=-.+|.+ .+....+|-|+-||+|..-
T Consensus 10 d~ieGRs~C~~C~~SRkFfCY~C~VPV~vp~E~~P~vkLPL~vDIIKHp~E~DG 63 (230)
T KOG3795|consen 10 DPIEGRSTCPGCKSSRKFFCYDCRVPVPVPGEFTPTVKLPLAVDIIKHPMEKDG 63 (230)
T ss_pred CcccccccCCCCCCcceEEEEeeccccCcchhcccccccceeeeeecCccccCC
Confidence 34467888999988764 4543333210 4566779999999999854
No 7
>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=37.26 E-value=30 Score=20.44 Aligned_cols=19 Identities=32% Similarity=0.796 Sum_probs=14.1
Q ss_pred CCCCCcCCcCCCCCCCCCC
Q 047765 11 NSPPPQRRRICGNCDRPQA 29 (72)
Q Consensus 11 ~~~~~~~r~~C~~C~~p~~ 29 (72)
+..+...+.+|..|++|..
T Consensus 14 ~~~~~r~~nRC~~cGRprg 32 (61)
T COG0199 14 PKSPGRGRNRCRRCGRPRG 32 (61)
T ss_pred CCccccccccccccCCCcc
Confidence 3444456789999999875
No 8
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=33.49 E-value=27 Score=24.56 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=11.8
Q ss_pred cCCcCCCCCCCCCC
Q 047765 16 QRRRICGNCDRPQA 29 (72)
Q Consensus 16 ~~r~~C~~C~~p~~ 29 (72)
..|+.|+.|++|..
T Consensus 152 AGRP~CPlCg~PlD 165 (171)
T PF11290_consen 152 AGRPPCPLCGEPLD 165 (171)
T ss_pred CCCCCCCCCCCCCC
Confidence 56899999999864
No 9
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=32.97 E-value=29 Score=24.61 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=11.8
Q ss_pred cCCcCCCCCCCCCC
Q 047765 16 QRRRICGNCDRPQA 29 (72)
Q Consensus 16 ~~r~~C~~C~~p~~ 29 (72)
..|+.|+.|++|..
T Consensus 154 AGRP~CPlCg~Pld 167 (177)
T TIGR03847 154 AGRPPCPLCGRPID 167 (177)
T ss_pred CCCCCCCCCCCCCC
Confidence 46899999999974
No 10
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=29.21 E-value=36 Score=16.24 Aligned_cols=10 Identities=30% Similarity=0.906 Sum_probs=5.2
Q ss_pred CcCCCCCCCC
Q 047765 18 RRICGNCDRP 27 (72)
Q Consensus 18 r~~C~~C~~p 27 (72)
...|+.||.+
T Consensus 16 ~~fC~~CG~~ 25 (26)
T PF13248_consen 16 AKFCPNCGAK 25 (26)
T ss_pred cccChhhCCC
Confidence 3455555543
No 11
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=27.23 E-value=43 Score=15.80 Aligned_cols=11 Identities=36% Similarity=1.075 Sum_probs=6.7
Q ss_pred CCcCCCCCCCC
Q 047765 17 RRRICGNCDRP 27 (72)
Q Consensus 17 ~r~~C~~C~~p 27 (72)
....|+.||.+
T Consensus 12 ~~~fC~~CG~~ 22 (23)
T PF13240_consen 12 DAKFCPNCGTP 22 (23)
T ss_pred cCcchhhhCCc
Confidence 34567777754
No 12
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=26.59 E-value=33 Score=19.77 Aligned_cols=10 Identities=30% Similarity=1.066 Sum_probs=8.0
Q ss_pred cCCcCCCCCC
Q 047765 16 QRRRICGNCD 25 (72)
Q Consensus 16 ~~r~~C~~C~ 25 (72)
.++..|++|+
T Consensus 17 rk~~~CPrCG 26 (51)
T COG1998 17 RKNRFCPRCG 26 (51)
T ss_pred EccccCCCCC
Confidence 4568899998
No 13
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=21.76 E-value=1.2e+02 Score=18.00 Aligned_cols=35 Identities=31% Similarity=0.537 Sum_probs=22.5
Q ss_pred cCCCCCCCCCC--ce-eeCCcCCCCCCCcc-eEEEEeCCCcc
Q 047765 19 RICGNCDRPQA--VC-LCHVLPTTPITTNT-RILIIHHPHEA 56 (72)
Q Consensus 19 ~~C~~C~~p~~--~C-lC~~ip~~~l~~~~-~v~ILqHp~E~ 56 (72)
..|.+|++-.. .| +|..- .+.... .++++.+|.+-
T Consensus 6 ~AC~~C~~i~~~~~Cp~Cgs~---~~S~~w~G~v~i~dPe~S 44 (64)
T PRK06393 6 RACKKCKRLTPEKTCPVHGDE---KTTTEWFGFLIITEPEGS 44 (64)
T ss_pred hhHhhCCcccCCCcCCCCCCC---cCCcCcceEEEEECCchh
Confidence 46778877663 35 55553 345554 48999999854
No 14
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=21.60 E-value=63 Score=15.76 Aligned_cols=13 Identities=23% Similarity=0.830 Sum_probs=8.1
Q ss_pred CcCCcCCCCCCCC
Q 047765 15 PQRRRICGNCDRP 27 (72)
Q Consensus 15 ~~~r~~C~~C~~p 27 (72)
+..-..|+.||.-
T Consensus 11 ~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 11 PESAKFCPHCGYD 23 (26)
T ss_pred hhhcCcCCCCCCC
Confidence 3445677777764
No 15
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=20.27 E-value=56 Score=18.96 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=10.7
Q ss_pred cCCcCCCCCCCCCC
Q 047765 16 QRRRICGNCDRPQA 29 (72)
Q Consensus 16 ~~r~~C~~C~~p~~ 29 (72)
.-.-.|+.||.|..
T Consensus 12 ~v~~~Cp~cGipth 25 (55)
T PF13824_consen 12 HVNFECPDCGIPTH 25 (55)
T ss_pred ccCCcCCCCCCcCc
Confidence 33456999999976
Done!